Your job contains 1 sequence.
>psy2291
MEIYCNYVDDKPMKQFLLHLDETNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQ
DLDETHLFISSDVIELLMTRVDDLLDQISFPINDRD
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2291
(96 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0259719 - symbol:Tfb5 species:7227 "Drosophila mel... 233 1.5e-19 1
ZFIN|ZDB-GENE-041001-144 - symbol:gtf2h5 "general transcr... 196 1.3e-15 1
UNIPROTKB|Q5ZKH0 - symbol:GTF2H5 "General transcription f... 193 2.6e-15 1
UNIPROTKB|Q2T9Z5 - symbol:GTF2H5 "General transcription f... 176 1.6e-13 1
UNIPROTKB|E2RRJ1 - symbol:GTF2H5 "Uncharacterized protein... 176 1.6e-13 1
UNIPROTKB|Q6ZYL4 - symbol:GTF2H5 "General transcription f... 176 1.6e-13 1
UNIPROTKB|F2Z5A9 - symbol:GTF2H5 "Uncharacterized protein... 176 1.6e-13 1
RGD|1560991 - symbol:Gtf2h5 "general transcription factor... 176 1.6e-13 1
MGI|MGI:107227 - symbol:Gtf2h5 "general transcription fac... 175 2.1e-13 1
RGD|2319072 - symbol:LOC100365408 "general transcription ... 150 9.4e-11 1
WB|WBGene00021904 - symbol:Y55B1AL.2 species:6239 "Caenor... 134 4.7e-09 1
TAIR|locus:2034685 - symbol:AT1G12400 species:3702 "Arabi... 103 9.0e-06 1
DICTYBASE|DDB_G0269906 - symbol:gtf2h5 "transcription ini... 89 0.00027 1
>FB|FBgn0259719 [details] [associations]
symbol:Tfb5 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IDA]
[GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0001111
"promoter clearance from RNA polymerase II promoter" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0001113
"transcriptional open complex formation at RNA polymerase II
promoter" evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA]
InterPro:IPR009400 Pfam:PF06331 GO:GO:0009411 EMBL:AE014134
GO:GO:0003677 GO:GO:0006366 GO:GO:0006289 GO:GO:0005675
GO:GO:0000439 KO:K10845 eggNOG:NOG278168
GeneTree:ENSGT00390000004028 OMA:KDLDDTH Gene3D:3.30.70.1220
SUPFAM:SSF142897 RefSeq:NP_001137791.2 UniGene:Dm.36844
ProteinModelPortal:B7Z018 SMR:B7Z018 STRING:B7Z018
EnsemblMetazoa:FBtr0301130 GeneID:7354403 KEGG:dme:Dmel_CG42373
CTD:7354403 FlyBase:FBgn0259719 OrthoDB:EOG41JWW1 PhylomeDB:B7Z018
NextBio:20902827 Uniprot:B7Z018
Length = 73
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 43/66 (65%), Positives = 55/66 (83%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
++ C D MKQFLLHLDE LGR+FIIQDLDE HLFIS+D++E+L RVDDL+D+ISF
Sbjct: 9 LVEC--DPAMKQFLLHLDEKLALGRKFIIQDLDENHLFISTDIVEVLQARVDDLMDRISF 66
Query: 91 PINDRD 96
P++D+D
Sbjct: 67 PLHDKD 72
>ZFIN|ZDB-GENE-041001-144 [details] [associations]
symbol:gtf2h5 "general transcription factor IIH,
polypeptide 5" species:7955 "Danio rerio" [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] InterPro:IPR009400 Pfam:PF06331
ZFIN:ZDB-GENE-041001-144 GO:GO:0003677 GO:GO:0006289 EMBL:AL954831
KO:K10845 CTD:404672 GeneTree:ENSGT00390000004028
HOVERGEN:HBG055393 OMA:KDLDDTH Gene3D:3.30.70.1220 SUPFAM:SSF142897
HOGENOM:HOG000199698 IPI:IPI00483178 RefSeq:NP_001127834.2
RefSeq:NP_001230077.1 UniGene:Dr.14153 SMR:Q5SNQ6
Ensembl:ENSDART00000078535 Ensembl:ENSDART00000141626
Ensembl:ENSDART00000151874 GeneID:751713 KEGG:dre:751713
InParanoid:Q5SNQ6 NextBio:20917856 Uniprot:Q5SNQ6
Length = 71
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 36/65 (55%), Positives = 52/65 (80%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
++ C D MKQFLL+LDET+ LG++FIIQDLD+TH+FI ++V+++L RV +L+DQ SF
Sbjct: 9 LVEC--DPAMKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVQILQERVGELMDQNSF 66
Query: 91 PINDR 95
PI +
Sbjct: 67 PITQK 71
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 10 DKPMKQFLLHLDETNTLGRRFIIHCFSD 37
D MKQFLL+LDET+ LG++FII D
Sbjct: 13 DPAMKQFLLYLDETSALGKKFIIQDLDD 40
>UNIPROTKB|Q5ZKH0 [details] [associations]
symbol:GTF2H5 "General transcription factor IIH subunit 5"
species:9031 "Gallus gallus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
InterPro:IPR009400 Pfam:PF06331 GO:GO:0005654 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0006289
Reactome:REACT_115612 KO:K10845 CTD:404672 eggNOG:NOG278168
GeneTree:ENSGT00390000004028 HOVERGEN:HBG055393 OMA:KDLDDTH
OrthoDB:EOG4FFD3H Gene3D:3.30.70.1220 SUPFAM:SSF142897
EMBL:AJ720114 IPI:IPI00592641 RefSeq:NP_001091004.1
UniGene:Gga.15058 ProteinModelPortal:Q5ZKH0 SMR:Q5ZKH0
STRING:Q5ZKH0 Ensembl:ENSGALT00000022319 GeneID:769754
KEGG:gga:769754 HOGENOM:HOG000199698 InParanoid:Q5ZKH0
NextBio:20919981 Uniprot:Q5ZKH0
Length = 71
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D MKQFLL+LDE+N LG++FIIQDLDETH+F+ ++++ L RV +L+DQ SF
Sbjct: 9 LIEC--DPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGELMDQNSF 66
Query: 91 PINDR 95
PI +
Sbjct: 67 PITQK 71
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 10 DKPMKQFLLHLDETNTLGRRFII 32
D MKQFLL+LDE+N LG++FII
Sbjct: 13 DPAMKQFLLYLDESNALGKKFII 35
>UNIPROTKB|Q2T9Z5 [details] [associations]
symbol:GTF2H5 "General transcription factor IIH subunit 5"
species:9913 "Bos taurus" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] InterPro:IPR009400 Pfam:PF06331 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0006289 KO:K10845
EMBL:BC111195 IPI:IPI00712153 RefSeq:NP_001035627.1
UniGene:Bt.21230 ProteinModelPortal:Q2T9Z5 SMR:Q2T9Z5 STRING:Q2T9Z5
Ensembl:ENSBTAT00000011263 GeneID:518046 KEGG:bta:518046 CTD:404672
eggNOG:NOG278168 GeneTree:ENSGT00390000004028 HOVERGEN:HBG055393
InParanoid:Q2T9Z5 OMA:KDLDDTH OrthoDB:EOG4FFD3H NextBio:20872570
Gene3D:3.30.70.1220 SUPFAM:SSF142897 Uniprot:Q2T9Z5
Length = 71
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/65 (47%), Positives = 50/65 (76%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F
Sbjct: 9 LIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAF 66
Query: 91 PINDR 95
+ +
Sbjct: 67 SLTQK 71
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 10 DKPMKQFLLHLDETNTLGRRFIIHCFSD 37
D MKQFLL+LDE+N LG++FII D
Sbjct: 13 DPAMKQFLLYLDESNALGKKFIIQDIDD 40
>UNIPROTKB|E2RRJ1 [details] [associations]
symbol:GTF2H5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] InterPro:IPR009400 Pfam:PF06331 GO:GO:0003677
GO:GO:0006289 KO:K10845 CTD:404672 GeneTree:ENSGT00390000004028
OMA:KDLDDTH Gene3D:3.30.70.1220 SUPFAM:SSF142897 EMBL:AAEX03000308
RefSeq:XP_855012.1 ProteinModelPortal:E2RRJ1 SMR:E2RRJ1
Ensembl:ENSCAFT00000047461 GeneID:612182 KEGG:cfa:612182
NextBio:20897715 Uniprot:E2RRJ1
Length = 71
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/65 (47%), Positives = 50/65 (76%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F
Sbjct: 9 LIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAF 66
Query: 91 PINDR 95
+ +
Sbjct: 67 SLTQK 71
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 10 DKPMKQFLLHLDETNTLGRRFIIHCFSD 37
D MKQFLL+LDE+N LG++FII D
Sbjct: 13 DPAMKQFLLYLDESNALGKKFIIQDIDD 40
>UNIPROTKB|Q6ZYL4 [details] [associations]
symbol:GTF2H5 "General transcription factor IIH subunit 5"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009400 Pfam:PF06331
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0006289 MIM:601675 Orphanet:453 Orphanet:670 KO:K10845
EMBL:AL590703 CTD:404672 eggNOG:NOG278168 HOVERGEN:HBG055393
OMA:KDLDDTH OrthoDB:EOG4FFD3H Gene3D:3.30.70.1220 SUPFAM:SSF142897
EMBL:AJ634743 EMBL:BC056906 EMBL:BC060317 IPI:IPI00165309
RefSeq:NP_997001.1 UniGene:Hs.356224 PDB:1YDL PDB:2JNJ PDBsum:1YDL
PDBsum:2JNJ ProteinModelPortal:Q6ZYL4 SMR:Q6ZYL4 DIP:DIP-29188N
STRING:Q6ZYL4 PhosphoSite:Q6ZYL4 DMDM:67462047 PRIDE:Q6ZYL4
DNASU:404672 Ensembl:ENST00000438073 GeneID:404672 KEGG:hsa:404672
UCSC:uc003qrd.3 GeneCards:GC06P158509 HGNC:HGNC:21157 HPA:CAB037029
MIM:608780 neXtProt:NX_Q6ZYL4 PharmGKB:PA134962077
InParanoid:Q6ZYL4 PhylomeDB:Q6ZYL4 EvolutionaryTrace:Q6ZYL4
GenomeRNAi:404672 NextBio:107889 Bgee:Q6ZYL4 CleanEx:HS_GTF2H5
Genevestigator:Q6ZYL4 GermOnline:ENSG00000185068 Uniprot:Q6ZYL4
Length = 71
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/65 (47%), Positives = 50/65 (76%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F
Sbjct: 9 LIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAF 66
Query: 91 PINDR 95
+ +
Sbjct: 67 SLTQK 71
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 10 DKPMKQFLLHLDETNTLGRRFIIHCFSD 37
D MKQFLL+LDE+N LG++FII D
Sbjct: 13 DPAMKQFLLYLDESNALGKKFIIQDIDD 40
>UNIPROTKB|F2Z5A9 [details] [associations]
symbol:GTF2H5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR009400 Pfam:PF06331 GO:GO:0003677 GO:GO:0006289
KO:K10845 GeneTree:ENSGT00390000004028 OMA:KDLDDTH
Gene3D:3.30.70.1220 SUPFAM:SSF142897 EMBL:FP476053
RefSeq:XP_003480269.1 RefSeq:XP_003480270.1 RefSeq:XP_003480271.1
ProteinModelPortal:F2Z5A9 SMR:F2Z5A9 Ensembl:ENSSSCT00000032308
GeneID:100739493 KEGG:ssc:100739493 Uniprot:F2Z5A9
Length = 71
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/65 (47%), Positives = 50/65 (76%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F
Sbjct: 9 LIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAF 66
Query: 91 PINDR 95
+ +
Sbjct: 67 SLTQK 71
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 10 DKPMKQFLLHLDETNTLGRRFIIHCFSD 37
D MKQFLL+LDE+N LG++FII D
Sbjct: 13 DPAMKQFLLYLDESNALGKKFIIQDIDD 40
>RGD|1560991 [details] [associations]
symbol:Gtf2h5 "general transcription factor IIH, polypeptide 5"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009400 Pfam:PF06331
RGD:1560991 GO:GO:0003677 GO:GO:0006289 KO:K10845 CTD:404672
GeneTree:ENSGT00390000004028 OMA:KDLDDTH OrthoDB:EOG4FFD3H
Gene3D:3.30.70.1220 SUPFAM:SSF142897 EMBL:CH474077 IPI:IPI00189005
RefSeq:NP_001119560.1 UniGene:Rn.25310 SMR:D3ZEI7
Ensembl:ENSRNOT00000024211 GeneID:502227 KEGG:rno:502227
NextBio:710978 Uniprot:D3ZEI7
Length = 71
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/65 (47%), Positives = 50/65 (76%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F
Sbjct: 9 LIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAF 66
Query: 91 PINDR 95
+ +
Sbjct: 67 SLTQK 71
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 10 DKPMKQFLLHLDETNTLGRRFIIHCFSD 37
D MKQFLL+LDE+N LG++FII D
Sbjct: 13 DPAMKQFLLYLDESNALGKKFIIQDIDD 40
>MGI|MGI:107227 [details] [associations]
symbol:Gtf2h5 "general transcription factor IIH, polypeptide
5" species:10090 "Mus musculus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009400
Pfam:PF06331 MGI:MGI:107227 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0006289 KO:K10845 CTD:404672
eggNOG:NOG278168 GeneTree:ENSGT00390000004028 HOVERGEN:HBG055393
OMA:KDLDDTH OrthoDB:EOG4FFD3H Gene3D:3.30.70.1220 SUPFAM:SSF142897
HOGENOM:HOG000199698 EMBL:AK003547 EMBL:AK003579 EMBL:AK011281
EMBL:AK012257 EMBL:AK013225 EMBL:BC029238 IPI:IPI00224882
RefSeq:NP_852057.2 UniGene:Mm.303441 ProteinModelPortal:Q8K2X8
SMR:Q8K2X8 STRING:Q8K2X8 PhosphoSite:Q8K2X8 PRIDE:Q8K2X8
Ensembl:ENSMUST00000039487 Ensembl:ENSMUST00000100955 GeneID:66467
KEGG:mmu:66467 UCSC:uc008aga.2 InParanoid:Q8K2X8 ChiTaRS:GTF2H5
NextBio:321774 Bgee:Q8K2X8 CleanEx:MM_GTF2H5 Genevestigator:Q8K2X8
GermOnline:ENSMUSG00000034345 Uniprot:Q8K2X8
Length = 71
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 31/65 (47%), Positives = 49/65 (75%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D MKQFLL+LDE N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F
Sbjct: 9 LIEC--DPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAF 66
Query: 91 PINDR 95
+ +
Sbjct: 67 SLTQK 71
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 10 DKPMKQFLLHLDETNTLGRRFIIHCFSD 37
D MKQFLL+LDE N LG++FII D
Sbjct: 13 DPAMKQFLLYLDEANALGKKFIIQDIDD 40
>RGD|2319072 [details] [associations]
symbol:LOC100365408 "general transcription factor IIH,
polypeptide 5-like" species:10116 "Rattus norvegicus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009400 Pfam:PF06331
RGD:2319072 GO:GO:0003677 GO:GO:0006289 OrthoDB:EOG4FFD3H
Gene3D:3.30.70.1220 SUPFAM:SSF142897 IPI:IPI00765242
RefSeq:XP_001069351.1 RefSeq:XP_003754206.1
ProteinModelPortal:D4A2W5 Ensembl:ENSRNOT00000065969 GeneID:689056
KEGG:rno:689056 NextBio:737820 Uniprot:D4A2W5
Length = 71
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/64 (43%), Positives = 46/64 (71%)
Query: 24 NTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDD 83
NTL + +I C D KQF L+L+E+N LG++F+IQD+D+TH F+ +++ +L +V +
Sbjct: 3 NTL-KGVLIEC--DSATKQFFLYLNESNALGKKFVIQDIDDTHAFVIVELVNVLQEQVGE 59
Query: 84 LLDQ 87
L+DQ
Sbjct: 60 LMDQ 63
>WB|WBGene00021904 [details] [associations]
symbol:Y55B1AL.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR009400
Pfam:PF06331 GO:GO:0003677 GO:GO:0006289 KO:K10845 eggNOG:NOG278168
GeneTree:ENSGT00390000004028 Gene3D:3.30.70.1220 SUPFAM:SSF142897
HOGENOM:HOG000199698 EMBL:FO080183 RefSeq:NP_497212.1
ProteinModelPortal:Q9N390 SMR:Q9N390 DIP:DIP-26454N
MINT:MINT-1064952 STRING:Q9N390 EnsemblMetazoa:Y55B1AL.2
GeneID:190298 KEGG:cel:CELE_Y55B1AL.2 UCSC:Y55B1AL.2 CTD:190298
WormBase:Y55B1AL.2 InParanoid:Q9N390 OMA:DDDIHIF NextBio:945296
Uniprot:Q9N390
Length = 71
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 20/54 (37%), Positives = 40/54 (74%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQIS 89
SD +Q L+HLD++ LG +FI+++LD+THLFI +++ +L +V+ +++ ++
Sbjct: 12 SDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQIMENMN 65
>TAIR|locus:2034685 [details] [associations]
symbol:AT1G12400 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] InterPro:IPR009400 Pfam:PF06331 EMBL:CP002684
GO:GO:0003677 GO:GO:0006289 KO:K10845 OMA:KDLDDTH
Gene3D:3.30.70.1220 SUPFAM:SSF142897 ProtClustDB:CLSN2682265
EMBL:BT010796 EMBL:BT011266 IPI:IPI00534432 RefSeq:NP_172702.1
UniGene:At.70193 ProteinModelPortal:Q6NNM0 SMR:Q6NNM0 STRING:Q6NNM0
EnsemblPlants:AT1G12400.1 GeneID:837795 KEGG:ath:AT1G12400
eggNOG:NOG288081 Genevestigator:Q6NNM0 Uniprot:Q6NNM0
Length = 71
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
D PM QF+++++ + ++FII LD THLF+ V +++ + + D DQ S+
Sbjct: 13 DIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDFRDQNSY 66
>DICTYBASE|DDB_G0269906 [details] [associations]
symbol:gtf2h5 "transcription initiation factor IIH5"
species:44689 "Dictyostelium discoideum" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009400 Pfam:PF06331
dictyBase:DDB_G0269906 GO:GO:0005634 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0006289 KO:K10845 Gene3D:3.30.70.1220 SUPFAM:SSF142897
RefSeq:XP_646393.1 HSSP:Q6ZYL4 ProteinModelPortal:Q55CT8
STRING:Q55CT8 EnsemblProtists:DDB0266451 GeneID:8617348
KEGG:ddi:DDB_G0269906 OMA:FLECDPP Uniprot:Q55CT8
Length = 72
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSD---VIELLMTRVDDLLDQISFPIN 93
D P KQF+ ++ + F + LDETHLF+ VI + R+DDL +Q ++ +
Sbjct: 13 DPPTKQFVEYISKQE----HFEVIVLDETHLFLQGGDEKVINSIQRRIDDLQNQNTYSVF 68
Query: 94 DRD 96
D+D
Sbjct: 69 DKD 71
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.328 0.145 0.435 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 96 96 0.00091 102 3 11 22 0.44 29
29 0.43 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 479 (51 KB)
Total size of DFA: 96 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 11.15u 0.07s 11.22t Elapsed: 00:00:07
Total cpu time: 11.16u 0.07s 11.23t Elapsed: 00:00:08
Start: Thu Aug 15 11:12:19 2013 End: Thu Aug 15 11:12:27 2013