RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2291
         (96 letters)



>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH
          polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 66

 Score = 75.8 bits (187), Expect = 1e-20
 Identities = 29/59 (49%), Positives = 47/59 (79%)

Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
          D  MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L  RV +L+DQ +F +  +
Sbjct: 8  DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQK 66


>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 24.5 bits (53), Expect = 1.6
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 25 TLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLF 68
          T G    + C   +  +++ L+ ++        I Q+L +   F
Sbjct: 16 TQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQF 59


>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 23.9 bits (51), Expect = 2.5
 Identities = 6/36 (16%), Positives = 11/36 (30%)

Query: 25 TLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQ 60
            G    + C S      F+L  +  +   +    Q
Sbjct: 16 NSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQ 51


>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor
          NKp46 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 93

 Score = 23.8 bits (51), Expect = 3.2
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 25 TLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLF 68
            G +   +C  D     FLL  +  ++  +R   +   E  L 
Sbjct: 16 ISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLG 59


>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 117

 Score = 22.4 bits (48), Expect = 9.0
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 3  IYCNYVDDKPMKQFLLHLDETNTLGRRFIIHCFSDKPMK 41
             N +  + +  F   L     L +++  H + +KP K
Sbjct: 15 YLYNKLPRRRVNIFGEEL--ERLLKKKYEGHWYPEKPYK 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.146    0.435 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 362,715
Number of extensions: 15339
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 11
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)