BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2293
(832 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 18/236 (7%)
Query: 391 ESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKII 450
+ D M R EL QTE Y+ L++++E F+ + E L + EM +I
Sbjct: 17 QGDTMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAES-----GFLTEGEMALI 71
Query: 451 FGDLCPIFDTHKDLLKDLKYLEQNYSDSVS---IGEVFVKHCTAFKKVYPPFINFFQDSN 507
F + + ++ LLK L+ ++ + + IG++ + + Y F + +
Sbjct: 72 FVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSHMQ-AYIRFCSCQLNGA 130
Query: 508 SLLKEK-EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILK 566
+LL++K ++++ F FLK + R G+P L L++P+QR+ LL+ IL+
Sbjct: 131 ALLQQKTDEDTDFKEFLKKLASDPRCKGMP------LSSFLLKPMQRITRYPLLIRSILE 184
Query: 567 NTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDI--ENCPPQLI 620
NT +S DH L AL+ + + +NE + ++N L I + E QLI
Sbjct: 185 NTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLI 240
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 22/243 (9%)
Query: 374 GSLLDYTTSPD--NFLATDESDV---MIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFK 428
G L D PD N+ T DV + + R +V EL TE++++ LRVL F
Sbjct: 31 GQLSDLEPEPDAQNWQHTVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFY 90
Query: 429 NPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKH 488
++ E ++ + E+ +F +L + + H + +K L + I ++ +
Sbjct: 91 QRMK-----KENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLAR 145
Query: 489 CTA-----FKKVYPPFINFFQDSNSLLKEKE-KNSRFLAFLKLCYMNLRDLGLPEIDKQT 542
++V F ++ + L+K K+ K SRF F++ + P+ +
Sbjct: 146 FDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESH------PQCRRLQ 199
Query: 543 LPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQ 602
L DL+I +QRL LLL I+K+T +++H+KL A D R ++ ++NE ++ +N+
Sbjct: 200 LRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENR 259
Query: 603 RSL 605
L
Sbjct: 260 HRL 262
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 393 DVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFG 452
D M R EL QTE Y+ L++++E F+ + E L + EM +IF
Sbjct: 90 DTMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAES-----GFLTEGEMALIFV 144
Query: 453 DLCPIFDTHKDLLKDLKYLEQNYSDSVS---IGEVFVKHCTAFKKVYPPFINFFQDSNSL 509
+ + ++ LLK L+ ++ + + IG++ + + Y F + + +L
Sbjct: 145 NWKELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSHMQ-AYIRFCSCQLNGAAL 203
Query: 510 LKEK-EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNT 568
L++K ++++ F FLK + R G+P L L++P+QR+ LL+ IL+NT
Sbjct: 204 LQQKTDEDTDFKEFLKKLASDPRCKGMP------LSSFLLKPMQRITRYPLLIRSILENT 257
Query: 569 SKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSL 605
+S DH L AL+ + + +NE + ++N L
Sbjct: 258 PESHADHSSLKLALERAEELCSQVNEGVREKENSDRL 294
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 134/297 (45%), Gaps = 25/297 (8%)
Query: 406 FKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLL 465
+E+ QTE Y + L + +HF PL+ L +M+ IF ++ +F H L
Sbjct: 30 LREIQQTEEKYTDTLGSIQQHFMKPLQR-------FLKPQDMETIFVNIEELFSVHTHFL 82
Query: 466 KDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKL 525
K+LK + ++ +VF+K+ F VY + + + ++ L ++ +R +KL
Sbjct: 83 KELKDALAG-PGATTLYQVFIKYKERFL-VYGRYCSQVESASKHL-DQVATAREDVQMKL 139
Query: 526 CYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGI 585
+ R + TL DLL+ P+QR+ LLL +++K+T + +T+ + L ALD +
Sbjct: 140 EECSQR----ANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAM 194
Query: 586 RTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFV---LKCDVIELSNMLSHR 642
R + +NE K+ + R + + IEN L N R + LK +E +
Sbjct: 195 RDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGRPKIDGELKITSVERRSKTDRY 254
Query: 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLL 699
FL + +CK+R ++ S N S + +K + H+ LL
Sbjct: 255 A-----FLLDKALLICKRRGDSYDLKASVNLH--SFQVRDDSSGERDNKKWSHMFLL 304
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 101/201 (50%), Gaps = 12/201 (5%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R V E+ TE +Y+ L+ + E + ++ + + + ++K+IFG++ I+
Sbjct: 42 RANVINEIMSTERHYIKHLKDICEGYLKQCRKRRD----MFSDEQLKVIFGNIEDIYRFQ 97
Query: 462 KDLLKDLKYLEQNYSDSVS-IGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFL 520
++DL+ N +S IG F++H F +Y + N D+ L + K+SR+
Sbjct: 98 MGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFW-IYSEYCNNHLDACMELSKLMKDSRYQ 156
Query: 521 AFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSE 580
F + C + L ++ + L+ PVQ++ L L ++LK T++ +D++ ++
Sbjct: 157 HFFEACRL------LQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAA 210
Query: 581 ALDGIRTVMTFLNENKQRQDN 601
AL +R V +NE K+R +N
Sbjct: 211 ALAVMRNVTQQINERKRRLEN 231
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 22/220 (10%)
Query: 393 DVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFG 452
D++ R EL TE NYVN L+++ E F+ PL T +L + E+ +IF
Sbjct: 74 DMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPL-----TESELLTEKEVAMIFV 128
Query: 453 DLCPIFDTHKDLLKDLKYLEQNYSDSVS---IGEVFVKHCTAFKKVYPPFINFFQ---DS 506
+ + + LLK L+ ++ + + IG++ + P+I F +
Sbjct: 129 NWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQ----PYIRFCSCQLNG 184
Query: 507 NSLLKEK-EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDIL 565
+L+++K ++ F F+K M+ R G+P L +++P+QR+ L++ +IL
Sbjct: 185 AALIQQKTDEAPDFKEFVKRLAMDPRCKGMP------LSSFILKPMQRVTRYPLIIKNIL 238
Query: 566 KNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSL 605
+NT ++ DH L AL+ + + +NE + ++N L
Sbjct: 239 ENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRL 278
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 107/220 (48%), Gaps = 22/220 (10%)
Query: 393 DVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFG 452
D++ R EL TE NYVN L+++ E F+ PL E +L + E+ +IF
Sbjct: 1 DMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLMES-----ELLTEKEVAMIFV 55
Query: 453 DLCPIFDTHKDLLKDLKYLEQNYSDSVS---IGEVFVKHCTAFKKVYPPFINFFQ---DS 506
+ + + LLK L+ ++ + + IG++ + P+I F +
Sbjct: 56 NWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQ----PYIRFCSRQLNG 111
Query: 507 NSLLKEK-EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDIL 565
+L+++K ++ F F+K M+ R G+P L + +++P+QR+ L++ +IL
Sbjct: 112 AALIQQKTDEAPDFKEFVKRLAMDPRCKGMP------LSEFILKPMQRVTRYPLIIKNIL 165
Query: 566 KNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSL 605
+NT ++ DH L AL+ + + +NE + ++N L
Sbjct: 166 ENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRL 205
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE++++ LRVL F +++ E ++ + E+ +F +L + + H
Sbjct: 27 RQEVINELFVTEASHLRTLRVLDLIFYQRMKK-----ENLMPREELARLFPNLPELIEIH 81
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKEKE-K 515
+ +K L + I ++ + ++V F ++ + L+K K+ K
Sbjct: 82 NSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRK 141
Query: 516 NSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDH 575
SRF F++ + P+ + L DL+I +QRL LLL I+K+T +++H
Sbjct: 142 ESRFQLFMQEAESH------PQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 195
Query: 576 QKLSEALDGIRTVMTFLNENKQRQDNQRSL 605
+KL A D R ++ ++NE ++ +N+ L
Sbjct: 196 EKLCRARDQCREILKYVNEAVKQTENRHRL 225
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE++++ LRVL F +++ E ++ + E+ +F +L + + H
Sbjct: 22 RQEVINELFVTEASHLRTLRVLDLIFYQRMKK-----ENLMPREELARLFPNLPELIEIH 76
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKEKE-K 515
+ +K L + I ++ + ++V F ++ + L+K K+ K
Sbjct: 77 NSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRK 136
Query: 516 NSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDH 575
SRF F++ + P+ + L DL+I +QRL LLL I+K+T +++H
Sbjct: 137 ESRFQLFMQEAESH------PQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 190
Query: 576 QKLSEALDGIRTVMTFLNENKQRQDNQRSL 605
+KL A D R ++ ++NE ++ +N+ L
Sbjct: 191 EKLCRARDQCREILKYVNEAVKQTENRHRL 220
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 22/220 (10%)
Query: 393 DVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFG 452
D++ R EL TE NYVN L+++ E F+ PL E +L + E+ +IF
Sbjct: 1 DMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLMES-----ELLTEKEVAMIFV 55
Query: 453 DLCPIFDTHKDLLKDLKYLEQNYSDSVS---IGEVFVKHCTAFKKVYPPFINFFQ---DS 506
+ + + LLK L+ ++ + + IG++ + P+I F +
Sbjct: 56 NWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQ----PYIRFCSRQLNG 111
Query: 507 NSLLKEK-EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDIL 565
+L+++K ++ F F+K M+ R G+P L +++P+QR+ L++ +IL
Sbjct: 112 AALIQQKTDEAPDFKEFVKRLEMDPRCKGMP------LSSFILKPMQRVTRYPLIIKNIL 165
Query: 566 KNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSL 605
+NT ++ DH L AL+ + + +NE + ++N L
Sbjct: 166 ENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRL 205
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 44/249 (17%)
Query: 382 SPDNFLATDESDVMIKGNSP----RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNT 437
SP N+ +V++ G P R +V EL TE +V L+VL + F + +
Sbjct: 2 SPPNWQQLVSREVLL-GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRV-----S 55
Query: 438 NECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSV-------------SIGEV 484
E IL+ +E++ IF +L I H L + +K + + SV GE
Sbjct: 56 REGILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEE 115
Query: 485 FVKHCTAFKKVYPPFINFFQDSNSLLKEKEK-NSRFLAFLKLCYMNLRDLGLPEIDKQTL 543
+KH A PF + ++K ++K +SRF F++ N P + L
Sbjct: 116 KLKHAAATFCSNQPF------ALEMIKSRQKKDSRFQTFVQDAESN------PLCRRLQL 163
Query: 544 PDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLN------ENKQ 597
D++ +QRL LLL++I K T + T+ +K+ +A D R ++ F+N ENKQ
Sbjct: 164 KDIIPTQMQRLTKYPLLLDNIAKYT-EWPTEREKVKKAADHCRQILNFVNQAVKEAENKQ 222
Query: 598 R-QDNQRSL 605
R +D QR L
Sbjct: 223 RLEDYQRRL 231
>pdb|3OLC|X Chain X, Crystal Structure Of The N-Terminal Region Of Topbp1
Length = 298
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 5/211 (2%)
Query: 115 RILGPTALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHM 174
RI+GP +I +P P++ ++ I T K++ ++ +
Sbjct: 77 RIVGPQVVI--FCXHHQRCVPRAEH--PVYNXVXSDVTISCTSL-EKEKREEVHKYVQXX 131
Query: 175 GGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFKADEPSF 234
GG++ +++N VTHLIA V +KY A + P+L ++ + WEK +
Sbjct: 132 GGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDIN 191
Query: 235 MNQYKLKLFQGAKVNFFGFSXXXXXXXXXXXXSNGGKPSLSSDEPLTTHVVVDDSKVTCM 294
+K +F G + G +GG+ TH++V + K
Sbjct: 192 XEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKY 251
Query: 295 PNVPCTSTYVVKARWFWMSIQNSECADESKY 325
+ + V +WF+ SI+ C DES Y
Sbjct: 252 ECAKRWNVHCVTTQWFFDSIEKGFCQDESIY 282
>pdb|2XNK|A Chain A, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
pdb|2XNK|B Chain B, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
pdb|2XNK|C Chain C, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
pdb|2XNK|D Chain D, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
Length = 292
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 5/211 (2%)
Query: 115 RILGPTALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHM 174
RI+GP +I +P P++ ++ I T K++ ++ +
Sbjct: 79 RIVGPQVVI--FCXHHQRCVPRAEH--PVYNXVXSDVTISCTSL-EKEKREEVHKYVQXX 133
Query: 175 GGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFKADEPSF 234
GG++ +++N VTHLIA V +KY A + P+L ++ + WEK +
Sbjct: 134 GGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDIN 193
Query: 235 MNQYKLKLFQGAKVNFFGFSXXXXXXXXXXXXSNGGKPSLSSDEPLTTHVVVDDSKVTCM 294
+K +F G + G +GG+ TH++V + K
Sbjct: 194 XEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKY 253
Query: 295 PNVPCTSTYVVKARWFWMSIQNSECADESKY 325
+ + V +WF+ SI+ C DES Y
Sbjct: 254 ECAKRWNVHCVTTQWFFDSIEKGFCQDESIY 284
>pdb|2XNH|A Chain A, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
Length = 287
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 5/211 (2%)
Query: 115 RILGPTALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHM 174
RI+GP +I +P P++ ++ I T K++ ++ +
Sbjct: 77 RIVGPQVVI--FCXHHQRCVPRAEH--PVYNXVXSDVTISCTSL-EKEKREEVHKYVQXX 131
Query: 175 GGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFKADEPSF 234
GG++ +++N VTHLIA V +KY A + P+L ++ + WEK +
Sbjct: 132 GGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDIN 191
Query: 235 MNQYKLKLFQGAKVNFFGFSXXXXXXXXXXXXSNGGKPSLSSDEPLTTHVVVDDSKVTCM 294
+K +F G + G +GG+ TH++V + K
Sbjct: 192 XEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKY 251
Query: 295 PNVPCTSTYVVKARWFWMSIQNSECADESKY 325
+ + V +WF+ SI+ C DES Y
Sbjct: 252 ECAKRWNVHCVTTQWFFDSIEKGFCQDESIY 282
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 97/204 (47%), Gaps = 18/204 (8%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R V E+ TE +Y+ LR + E + ++ + + ++ +++ IFG++ I+
Sbjct: 119 RTNVINEILSTERDYIKHLRDICEGYVRQCRKRAD----MFSEEQLRTIFGNIEDIYRCQ 174
Query: 462 KDLLKDLKYLEQNYSDS----VSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNS 517
K +K LEQ ++ +G F++H F+ +Y + N ++ L K S
Sbjct: 175 KAFVK---ALEQRFNRERPHLSELGACFLEHQADFQ-IYSEYCNNHPNACVELSRLTKLS 230
Query: 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQK 577
+++ F + C + L ++ +L L+ PVQ++ L L ++LK T D +
Sbjct: 231 KYVYFFEACRL------LQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKD 284
Query: 578 LSEALDGIRTVMTFLNENKQRQDN 601
+ AL ++ V +NE K+R +N
Sbjct: 285 VEAALHAMKNVAQLINERKRRLEN 308
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 25/261 (9%)
Query: 406 FKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLL 465
+E+ QTE Y + L + +HF PL+ L +++IIF ++ + H L
Sbjct: 202 LREIQQTEEKYTDTLGSIQQHFLKPLQR-------FLKPQDIEIIFINIEDLLRVHTHFL 254
Query: 466 KDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKL 525
K++K + ++ +VF+K+ F VY + + + ++ L R A +
Sbjct: 255 KEMKEA-LGTPGAANLYQVFIKYKERFL-VYGRYCSQVESASKHL------DRVAAARED 306
Query: 526 CYMNLRDLGLPEIDKQ-TLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDG 584
M L + + + TL DLL+ P+QR+ LLL +++K+T + + + + L ALD
Sbjct: 307 VQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QEAMEKENLRLALDA 365
Query: 585 IRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFV---LKCDVIELSNMLSH 641
+R + +NE K+ + R + + IEN L + R + LK +E + +
Sbjct: 366 MRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHYGRPKIDGELKITSVERRSKMDR 425
Query: 642 RGDCITLFLFTDVVEVCKKRS 662
FL + +CK+R
Sbjct: 426 YA-----FLLDKALLICKRRG 441
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 18/207 (8%)
Query: 399 NSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIF 458
+ R V E+ TE +Y+ LR + E + ++ + ++ +++ IFG++ I+
Sbjct: 153 DQXRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADX----FSEEQLRTIFGNIEDIY 208
Query: 459 DTHKDLLKDLKYLEQNYSDS----VSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKE 514
K +K LEQ ++ +G F++H F+ +Y + N ++ L
Sbjct: 209 RCQKAFVK---ALEQRFNRERPHLSELGACFLEHQADFQ-IYSEYCNNHPNACVELSRLT 264
Query: 515 KNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTD 574
K S+++ F + C + + + + +L L+ PVQ++ L L ++LK T D
Sbjct: 265 KLSKYVYFFEACRLLQKXIDI------SLDGFLLTPVQKICKYPLQLAELLKYTHPQHRD 318
Query: 575 HQKLSEALDGIRTVMTFLNENKQRQDN 601
+ + AL + V +NE K+R +N
Sbjct: 319 FKDVEAALHAXKNVAQLINERKRRLEN 345
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 25/261 (9%)
Query: 406 FKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLL 465
+E+ QTE Y + L + +HF PL+ L +++IIF ++ + H L
Sbjct: 11 LREIQQTEEKYTDTLGSIQQHFLKPLQR-------FLKPQDIEIIFINIEDLLRVHTHFL 63
Query: 466 KDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKL 525
K++K + ++ +VF+K+ F VY + + + ++ L R A +
Sbjct: 64 KEMKE-ALGTPGAANLYQVFIKYKERFL-VYGRYCSQVESASKHL------DRVAAARED 115
Query: 526 CYMNLRDLGLPEIDKQ-TLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDG 584
M L + + + TL DLL+ P+QR+ LLL +++K+T + + + + L ALD
Sbjct: 116 VQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QEAMEKENLRLALDA 174
Query: 585 IRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFV---LKCDVIELSNMLSH 641
+R + +NE K+ + R + + IEN L + R + LK +E + +
Sbjct: 175 MRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHYGRPKIDGELKITSVERRSKMDR 234
Query: 642 RGDCITLFLFTDVVEVCKKRS 662
FL + +CK+R
Sbjct: 235 YA-----FLLDKALLICKRRG 250
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 404 QVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKD 463
+V EL +TE YV L L E + PL+ E L Q E+ ++FG+L + +
Sbjct: 14 KVICELLETERTYVKDLNCLXERYLKPLQ-----KETFLTQDELDVLFGNLTEXVEFQVE 68
Query: 464 LLK----------DLKYLE---QNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLL 510
LK DL+ LE Q S+G F+ + FK +Y F +L
Sbjct: 69 FLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFK-LYSAFCASHTKVPKVL 127
Query: 511 KEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSK 570
+ + ++ F AFL N R + TL LI+P+QR+ LLL ++ T
Sbjct: 128 VKAKTDTAFKAFLDA--QNPR-----QQHSSTLESYLIKPIQRVLKYPLLLRELFALTDA 180
Query: 571 SSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFD 607
S +H L A+ V + +NE ++ + ++FD
Sbjct: 181 ESEEHYHLDVAIKTXNKVASHINEXQKIHEEFGAVFD 217
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 26/262 (9%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R + EL Q E + + L++ + + +P KL+ I + E+ IFG L + H
Sbjct: 20 RQEAIFELSQGEEDLIEDLKLAKKAYHDP-XLKLS----IXTEQELNQIFGTLDSLIPLH 74
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLA 521
++LL L+ + + + +G + V Y + + + +LL K+++ R
Sbjct: 75 EELLSQLRDVRKPDGSTEHVGPILVGWLPCLSS-YDSYCSNQVAAKALLDHKKQDHRVQD 133
Query: 522 FLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEA 581
FL+ C L P K L + L P RL LLL +IL++T + D Q L EA
Sbjct: 134 FLQRC------LESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEA 187
Query: 582 LDGIRTVMTFLN----ENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELSN 637
++ I+ ++ +N E++ R +R L+ E LI+S R VL C EL N
Sbjct: 188 INIIQGIVAEINTKTGESECRYYKERLLY----LEEGQKDSLIDSSR--VLCCHG-ELKN 240
Query: 638 MLSHRGDCITLFLFTDVVEVCK 659
+RG + +FLF +V+ + +
Sbjct: 241 ---NRGVKLHVFLFQEVLVITR 259
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 406 FKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLL 465
+E+ QTE Y + L + +HF PL+ L +M+ IF ++ +F H L
Sbjct: 32 LREIQQTEEKYTDTLGSIQQHFMKPLQR-------FLKPQDMETIFVNIEELFSVHTHFL 84
Query: 466 KDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKL 525
K+LK + ++ +VF+K+ F VY + + + ++ L ++ +R +KL
Sbjct: 85 KELKDALAG-PGATTLYQVFIKYKERFL-VYGRYCSQVESASKHL-DQVATAREDVQMKL 141
Query: 526 CYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGI 585
+ R + TL DLL+ P+QR+ LLL +++K+T + +T+ + L ALD +
Sbjct: 142 EECSQR----ANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAM 196
Query: 586 RTVMTFLNENKQ 597
R + +NE K+
Sbjct: 197 RDLAQCVNEVKR 208
>pdb|3L46|A Chain A, Crystal Structure Of The Second Brct Domain Of Epithelial
Cell Transforming 2 (Ect2)
pdb|3L46|B Chain B, Crystal Structure Of The Second Brct Domain Of Epithelial
Cell Transforming 2 (Ect2)
Length = 112
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 243 FQGAKVNFFGFSXXXXXXXXXXXXSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTST 302
FQ ++F GFS GGK DE TH+VV+++ V +P P
Sbjct: 22 FQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDE-RCTHLVVEENIVKDLPFEPSKKL 80
Query: 303 YVVKARWFWMSIQNSECADESKYLFGK 329
YVVK WFW SIQ A E+ YL+ K
Sbjct: 81 YVVKQEWFWGSIQMDARAGETMYLYEK 107
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 12/201 (5%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R + E+ + E + + L++ + + +P+ KL+ I+++ E+ IFGDL H
Sbjct: 33 RQEAIYEMSRGEQDLIEDLKLARKAYHDPML-KLS----IMSEEELTHIFGDLDSYIPLH 87
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLA 521
+DLL + + IG + V Y + + + +LL +K+++ R
Sbjct: 88 EDLLTRIGEATKPDGTVEQIGHILVSWLPRLN-AYRGYCSNQLAAKALLDQKKQDPRVQD 146
Query: 522 FLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEA 581
FL+ C L P K L L P RL LLL +ILK+T K D Q L +A
Sbjct: 147 FLQRC------LESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDA 200
Query: 582 LDGIRTVMTFLNENKQRQDNQ 602
+ I+ V++ +N K + Q
Sbjct: 201 ILIIQGVLSDINLKKGESECQ 221
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|E Chain E, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 354
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 121/255 (47%), Gaps = 34/255 (13%)
Query: 405 VFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDL 464
V EL +TE YV+ L ++E + + + E + + +I+FG++ I++ H+D
Sbjct: 16 VLSELVETEKMYVDDLGQIVEGYMATMAAQ-GVPESL--RGRDRIVFGNIQQIYEWHRDY 72
Query: 465 LKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLA-FL 523
L+ L++ D + ++F+KH ++ ++ + Q+ K K+ ++ F
Sbjct: 73 F--LQELQRCLKDPDWLAQLFIKH----ERRLHMYVVYCQN-------KPKSEHVVSEFG 119
Query: 524 KLCYMNLRD-LGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEAL 582
+ LR LG + L DLLI+PVQR+ LLL D LK +++ D L +A+
Sbjct: 120 DSYFEELRQQLG----HRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAV 175
Query: 583 DGIRTVMTFLNENKQRQDNQRSLFDI--YQDIENCPPQLINSHRSFVLKCDVIELSNMLS 640
+ VM F+ +R ++ +L + ++ +L+ +V + E +LS
Sbjct: 176 E----VMCFV---PKRCNDMMTLGRLRGFEGKLTAQGKLLGQDTFWVTEP---EAGGLLS 225
Query: 641 HRGDCITLFLFTDVV 655
RG +FLF ++
Sbjct: 226 SRGRERRVFLFEQII 240
>pdb|2COU|A Chain A, Solution Structure Of The Second Brct Domain Of Epithelial
Cell Transforming 2
Length = 109
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 238 YKLKLFQGAKVNFFGFSXXXXXXXXXXXXSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNV 297
+K+ FQ ++F GFS GG DE TH++V+++ V +P
Sbjct: 8 FKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDE-RCTHLIVEENTVKDLPFE 66
Query: 298 PCTSTYVVKARWFWMSIQNSECADESKYLFGKNFRTPDRA 337
P +VVK WFW SIQ A E+ YL+ K TP+
Sbjct: 67 PSKKLFVVKQEWFWGSIQMDARAGETMYLYEKA-NTPESG 105
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 381 TSP---DNFLATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNT 437
TSP + + D + K R +V EL TE+ +V +LRVL + F P+ E L
Sbjct: 4 TSPPGWEELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECL-- 61
Query: 438 NECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSV-SIGEVFVKH-----CTA 491
E++ IF L + + H L L Q + IG+V + +
Sbjct: 62 ---FFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSW 118
Query: 492 FKKVYPPFINFFQDSNSLLKEKE-KNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRP 550
F+K+ F + + LK K+ K+ RF AF++ P + L D++
Sbjct: 119 FQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESR------PRCRRLQLKDMIPTE 172
Query: 551 VQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNE 594
+QRL LLL I +NT + T+ +K+ A + R ++ +N+
Sbjct: 173 MQRLTKYPLLLQSIGQNT-EEPTEREKVELAAECCREILHHVNQ 215
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 381 TSPDNF---LATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNT 437
TSP + + D + K R +V EL TE+ +V +LRVL + F P+ E L
Sbjct: 2 TSPPGWRELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECL-- 59
Query: 438 NECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSV-SIGEVFVKH-----CTA 491
E++ IF L + + H L L Q + IG+V + +
Sbjct: 60 ---FFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSW 116
Query: 492 FKKVYPPFINFFQDSNSLLKEKE-KNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRP 550
F+K+ F + + LK K+ K+ RF AF++ P + L D++
Sbjct: 117 FQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESR------PRCRRLQLKDMIPTE 170
Query: 551 VQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNE 594
+QRL LLL I +NT + T+ +K+ A + R ++ +N+
Sbjct: 171 MQRLTKYPLLLQSIGQNT-EEPTEREKVELAAECCREILHHVNQ 213
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 19/205 (9%)
Query: 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCP 456
K R +V EL TE+ +V +LRVL + F P+ E L E++ IF L
Sbjct: 63 KSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECL-----FFPLEELQNIFPSLDE 117
Query: 457 IFDTHKDLLKDLKYLEQNYSDSV-SIGEVFV-----KHCTAFKKVYPPFINFFQDSNSLL 510
+ + H L L Q + IG+V + + F+K+ F + + L
Sbjct: 118 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQL 177
Query: 511 KEKE-KNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTS 569
K K+ K+ RF AF++ P + L D++ +QRL LLL I +NT
Sbjct: 178 KAKQRKDPRFCAFVQEAESR------PRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT- 230
Query: 570 KSSTDHQKLSEALDGIRTVMTFLNE 594
+ T+ +K+ A + R ++ +N+
Sbjct: 231 EEPTEREKVELAAECCREILHHVNQ 255
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 19/200 (9%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE+ +V +LRVL + F P+ E L E++ IF L + + H
Sbjct: 181 RQEVISELLVTEAAHVRMLRVLHDLFFQPMAECL-----FFPLEELQNIFPSLDELIEVH 235
Query: 462 KDLLKDLKYLEQNYSDSV-SIGEVFV-----KHCTAFKKVYPPFINFFQDSNSLLKEKE- 514
L L Q + IG+V + + F+K+ F + + LK K+
Sbjct: 236 SLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQR 295
Query: 515 KNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTD 574
K+ RF AF++ P + L D++ +QRL LLL I +NT + T+
Sbjct: 296 KDPRFCAFVQEAESR------PRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT-EEPTE 348
Query: 575 HQKLSEALDGIRTVMTFLNE 594
+K+ A + R ++ +N+
Sbjct: 349 REKVELAAECCREILHHVNQ 368
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 12/245 (4%)
Query: 388 ATDESDVMIKGNSPRHQVF-KELCQTESNYVNVLRVLIEHFKNPLEEKLNTNEC----IL 442
++ ++ +G R V +EL +E YV L+ L F + L+ + L
Sbjct: 8 SSGRENLYFQGGQSRALVIAQELLSSEKAYVEXLQHLNLDFHGAVXRALDDXDHEGRDTL 67
Query: 443 NQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINF 502
+ E++ +L I D H+ +L++L+ N+ + +VF+ F + F
Sbjct: 68 AREELRQGLSELPAIHDLHQGILEELEERLSNWESQQKVADVFLAREQGFDHHATHILQF 127
Query: 503 FQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLN 562
+ L + + R A ++ +++ QT L+R VQRL +LL
Sbjct: 128 DRYLGLLSENCLHSPRLAAAVREFEQSVQG------GSQTAKHRLLRVVQRLFQYQVLLT 181
Query: 563 DILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINS 622
D L N S ++ AL I V N++ ++ +N + L I + L+
Sbjct: 182 DYLNNLCPDSAEYDNTQGALSLISKVTDRANDSXEQGENLQKLVHIEHSVRG-QGDLLQP 240
Query: 623 HRSFV 627
R F+
Sbjct: 241 GREFL 245
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 22/198 (11%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFK----NPLEEKLNTNECILNQAEMKIIFGDLCPI 457
R V EL TE YV L ++E + NPL L + Q + I+FG++ I
Sbjct: 12 RRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGL---QNKKNILFGNMEEI 68
Query: 458 FDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNS 517
+ H + L+ LE +G F++ F+ +Y + S SL ++
Sbjct: 69 YHFHNRIF--LRELESCIDCPELVGRCFLERMEEFQ-IYEKYCQNKPRSESLWRQ----C 121
Query: 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQK 577
F + C L K +L L++PVQR+ LLL ++LK SK +
Sbjct: 122 SDCPFFQECQKKLDH-------KLSLDSYLLKPVQRITKYQLLLKEMLK-YSKHCEGAED 173
Query: 578 LSEALDGIRTVMTFLNEN 595
L EAL I ++ +N++
Sbjct: 174 LQEALSSILGILKAVNDS 191
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 22/198 (11%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFK----NPLEEKLNTNECILNQAEMKIIFGDLCPI 457
R V EL TE YV L ++E + NPL L + Q + I+FG++ I
Sbjct: 12 RRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGL---QNKKNILFGNMEEI 68
Query: 458 FDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNS 517
+ H + L+ LE +G F++ F+ +Y + S SL ++
Sbjct: 69 YHFHNRIF--LRELESCIDCPELVGRCFLERMEEFQ-IYEKYCQNKPRSESLWRQ----C 121
Query: 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQK 577
F + C L K +L L++PVQR+ LLL ++LK SK +
Sbjct: 122 SDCPFFQECQKKLDH-------KLSLDSYLLKPVQRITKYQLLLKEMLK-YSKHCEGAED 173
Query: 578 LSEALDGIRTVMTFLNEN 595
L EAL I ++ +N++
Sbjct: 174 LQEALSSILGILKAVNDS 191
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 22/198 (11%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFK----NPLEEKLNTNECILNQAEMKIIFGDLCPI 457
R V EL TE YV L ++E + NPL L + Q + I+FG++ I
Sbjct: 12 RRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGL---QNKKNILFGNMEEI 68
Query: 458 FDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNS 517
+ H + L+ LE +G F++ F+ +Y + S SL ++
Sbjct: 69 YHFHNRIF--LRELESCIDCPELVGRCFLERMEEFQ-IYEKYCQNKPRSESLWRQ----C 121
Query: 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQK 577
F + C L K +L L++PVQR+ LLL ++LK SK +
Sbjct: 122 SDCPFFQECQKKLDH-------KLSLDSYLLKPVQRITKYQLLLKEMLK-YSKHCEGAED 173
Query: 578 LSEALDGIRTVMTFLNEN 595
L EAL I ++ +N++
Sbjct: 174 LQEALSSILGILKAVNDS 191
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 22/198 (11%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFK----NPLEEKLNTNECILNQAEMKIIFGDLCPI 457
R V EL TE YV L ++E + NPL L + Q + I+FG+ I
Sbjct: 12 RRHVXNELLDTERAYVEELLCVLEGYAAEXDNPLXAHLISTGL---QNKKNILFGNXEEI 68
Query: 458 FDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNS 517
+ H + L+ LE +G F++ F+ +Y + S SL ++
Sbjct: 69 YHFHNRIF--LRELESCIDCPELVGRCFLERXEEFQ-IYEKYCQNKPRSESLWRQ----C 121
Query: 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQK 577
F + C L K +L L++PVQR+ LLL + LK SK +
Sbjct: 122 SDCPFFQECQKKLDH-------KLSLDSYLLKPVQRITKYQLLLKEXLK-YSKHCEGAED 173
Query: 578 LSEALDGIRTVMTFLNEN 595
L EAL I ++ +N++
Sbjct: 174 LQEALSSILGILKAVNDS 191
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 405 VFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNE----CILNQAEMKIIFGDLCPIFDT 460
+ EL QTE YV L +E + L E + E ILN+ IIFG++ I+D
Sbjct: 16 IMAELLQTEKAYVRDLHECLETY---LWEMTSGVEEIPPGILNKEH--IIFGNIQEIYDF 70
Query: 461 HKDL-LKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRF 519
H ++ LK+L+ EQ D +G FV F+ +Y + DSN L+ E F
Sbjct: 71 HNNIFLKELEKYEQLPED---VGHCFVTWADKFQ-MYVTYCKNKPDSNQLILEH--AGTF 124
Query: 520 LAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLS 579
++ + GL ++ LI+PVQR+ LLL ++L +
Sbjct: 125 FDEIQ------QRHGL----ANSISSYLIKPVQRVTKYQLLLKELLTCCEEGK------G 168
Query: 580 EALDGIRTVMT 590
E DG+ +++
Sbjct: 169 ELKDGLEVMLS 179
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 20/175 (11%)
Query: 394 VMIKGNSPRHQVF--KELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIF 451
M K S R + F EL QTE YV LR ++ + + + + E+ IIF
Sbjct: 2 AMEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKEL-IIF 60
Query: 452 GDLCPIFDTHKDL-LKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLL 510
G++ I++ H ++ LK+L+ EQ D +G FV F+ +Y + DS L+
Sbjct: 61 GNMQEIYEFHNNIFLKELEKYEQLPED---VGHCFVTWADKFQ-MYVTYCKNKPDSTQLI 116
Query: 511 KEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDIL 565
E S F + GL ++ LI+PVQR+ LLL ++L
Sbjct: 117 LE-HAGSYFDEIQQ-------RHGLA----NSISSYLIKPVQRITKYQLLLKELL 159
>pdb|2D8M|A Chain A, Solution Structure Of The First Brct Domain Of Dna-Repair
Protein Xrcc1
Length = 129
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRV 207
+Q +V+ ++GF+N + +L D +G K R + THLI + KY +G
Sbjct: 23 LQGVVVVLSGFQNPFRS-ELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGG 81
Query: 208 PVLTKEFVLSAWEKR 222
++ KE+VL R
Sbjct: 82 RIVRKEWVLDCHRMR 96
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 397 KGNSPRHQVF--KELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDL 454
K S R + F EL QTE YV LR ++ + + + + E+ IIFG++
Sbjct: 3 KRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKEL-IIFGNM 61
Query: 455 CPIFDTHKDL-LKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEK 513
I++ H ++ LK+L+ EQ D +G FV F+ +Y + DS L+ E
Sbjct: 62 QEIYEFHNNIFLKELEKYEQLPED---VGHCFVTWADKFQ-MYVTYCKNKPDSTQLILE- 116
Query: 514 EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDIL 565
S F + GL ++ LI+PVQR+ LLL ++L
Sbjct: 117 HAGSYFDEIQQ-------RHGLA----NSISSYLIKPVQRITKYQLLLKELL 157
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 65 FKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSEFTNNFLRF 108
F A+ ++N + L+E + V + PI I E+TN FL+F
Sbjct: 79 FNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKF 122
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 65 FKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSEFTNNFLRF 108
F A+ ++N + L+E + V + PI I E+TN FL+F
Sbjct: 79 FNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKF 122
>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form
Length = 348
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 784 IETHESSNSTLGRAIKFASKQVGRTLSLNRTPSTLRKVMSSMK 826
+E ++SN+ + I F + G TL + PSTL K++S K
Sbjct: 145 LEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFK 187
>pdb|3RGH|A Chain A, Structure Of Filamin A Immunoglobulin-Like Repeat 10
From Homo Sapiens
pdb|3RGH|B Chain B, Structure Of Filamin A Immunoglobulin-Like Repeat 10
From Homo Sapiens
Length = 100
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 14 SSPGGTTAIQSE--PMEVDCSIMQPSEETEEKDTEPGMPCQICVCSNVDQTET 64
S PG A E +VDCS +E T E +E G+P ++ + + D T T
Sbjct: 14 SGPGLERATAGEVGQFQVDCSSAGSAELTIEIXSEAGLPAEVYIQDHGDGTHT 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,053,275
Number of Sequences: 62578
Number of extensions: 933118
Number of successful extensions: 2024
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1952
Number of HSP's gapped (non-prelim): 48
length of query: 832
length of database: 14,973,337
effective HSP length: 107
effective length of query: 725
effective length of database: 8,277,491
effective search space: 6001180975
effective search space used: 6001180975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)