Query psy2293
Match_columns 832
No_of_seqs 573 out of 2884
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:00:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3524|consensus 100.0 7.8E-88 1.7E-92 732.4 30.3 730 44-830 14-785 (850)
2 KOG3523|consensus 100.0 2.9E-51 6.3E-56 442.2 24.6 381 389-803 245-646 (695)
3 KOG4424|consensus 100.0 1.6E-45 3.4E-50 397.5 31.5 308 399-763 64-373 (623)
4 KOG4305|consensus 100.0 2.6E-39 5.5E-44 376.3 18.9 396 333-765 280-692 (1029)
5 KOG3520|consensus 100.0 7.4E-39 1.6E-43 372.9 20.9 340 382-765 371-727 (1167)
6 KOG2996|consensus 100.0 2.5E-35 5.4E-40 315.2 27.5 335 309-664 78-443 (865)
7 KOG3521|consensus 100.0 4E-34 8.7E-39 310.9 25.8 330 392-765 168-532 (846)
8 KOG3518|consensus 100.0 5.1E-34 1.1E-38 287.7 22.1 311 399-763 119-436 (521)
9 COG5422 ROM1 RhoGEF, Guanine n 100.0 9.5E-34 2.1E-38 315.5 10.1 401 334-765 425-840 (1175)
10 smart00325 RhoGEF Guanine nucl 100.0 9.1E-31 2E-35 262.5 20.7 179 405-594 1-180 (180)
11 cd00160 RhoGEF Guanine nucleot 100.0 2E-30 4.4E-35 260.2 21.7 178 402-593 1-181 (181)
12 PF00621 RhoGEF: RhoGEF domain 100.0 9.8E-28 2.1E-32 240.1 21.6 179 405-594 1-180 (180)
13 KOG2070|consensus 99.9 2.8E-25 6.1E-30 234.8 25.1 311 394-757 94-404 (661)
14 KOG3522|consensus 99.9 3.2E-26 6.8E-31 257.2 15.8 265 402-708 1-270 (925)
15 KOG0689|consensus 99.9 6.6E-25 1.4E-29 239.8 7.9 305 397-762 58-363 (448)
16 KOG4240|consensus 99.9 2.1E-24 4.6E-29 250.9 9.6 298 400-762 631-931 (1025)
17 KOG3531|consensus 99.9 1.2E-23 2.5E-28 234.9 6.4 328 402-785 534-876 (1036)
18 KOG3519|consensus 99.9 8.2E-22 1.8E-26 235.2 17.4 256 397-664 332-598 (756)
19 KOG1929|consensus 99.9 2.1E-22 4.5E-27 233.8 11.6 188 142-330 4-191 (811)
20 cd01229 PH_etc2 Epithelial cel 99.8 3.7E-21 8E-26 166.8 9.1 129 619-761 1-129 (129)
21 KOG3524|consensus 99.8 9E-20 1.9E-24 201.1 4.5 525 43-615 44-591 (850)
22 KOG1929|consensus 99.6 2.8E-15 6E-20 174.9 17.4 151 61-222 24-178 (811)
23 PF12738 PTCB-BRCT: twin BRCT 99.6 1.3E-15 2.9E-20 124.4 4.1 63 151-214 1-63 (63)
24 cd01218 PH_phafin2 Phafin2 Pl 99.5 8.1E-14 1.7E-18 124.2 13.2 102 623-763 1-102 (104)
25 cd01220 PH_CDEP Chondrocyte-de 99.5 4.2E-13 9E-18 119.3 12.7 98 625-760 1-98 (99)
26 cd01261 PH_SOS Son of Sevenles 99.5 5.2E-13 1.1E-17 120.3 12.2 109 624-760 2-110 (112)
27 cd01221 PH_ephexin Ephexin Ple 99.4 1.1E-12 2.5E-17 119.4 12.3 105 624-757 1-120 (125)
28 PF00533 BRCT: BRCA1 C Terminu 99.3 1.4E-12 3E-17 111.4 5.7 75 239-314 2-78 (78)
29 PF00533 BRCT: BRCA1 C Terminu 99.3 3.6E-12 7.7E-17 108.8 7.8 73 146-219 4-78 (78)
30 PF12738 PTCB-BRCT: twin BRCT 99.3 5.5E-13 1.2E-17 109.0 1.6 63 246-309 1-63 (63)
31 cd01219 PH_FGD FGD (faciogenit 99.3 4.7E-11 1E-15 107.2 12.1 100 625-760 1-100 (101)
32 cd01232 PH_TRIO Trio pleckstri 99.3 5.7E-11 1.2E-15 107.7 12.3 109 624-760 3-113 (114)
33 cd01224 PH_Collybistin Collybi 99.3 7.4E-11 1.6E-15 104.5 12.2 101 625-757 1-105 (109)
34 cd01226 PH_exo84 Exocyst compl 99.2 8.6E-11 1.9E-15 102.6 11.6 98 625-759 1-98 (100)
35 cd01222 PH_clg Clg (common-sit 99.2 9.3E-11 2E-15 103.2 11.4 94 624-759 2-95 (97)
36 cd00027 BRCT Breast Cancer Sup 99.2 6.2E-11 1.3E-15 98.6 7.8 71 150-220 1-72 (72)
37 cd01227 PH_Dbs Dbs (DBL's big 99.2 3.7E-10 8E-15 104.7 12.5 109 625-763 2-119 (133)
38 KOG4269|consensus 99.1 3.6E-11 7.7E-16 136.8 5.8 268 397-704 328-608 (1112)
39 cd01228 PH_BCR-related BCR (br 99.1 1.5E-10 3.4E-15 98.4 7.8 94 624-759 1-94 (96)
40 smart00292 BRCT breast cancer 99.1 2.4E-10 5.2E-15 97.2 8.5 75 147-222 2-80 (80)
41 smart00292 BRCT breast cancer 99.1 1.2E-10 2.6E-15 99.1 5.9 76 241-317 1-80 (80)
42 cd00027 BRCT Breast Cancer Sup 99.0 3E-10 6.4E-15 94.4 5.6 70 245-315 1-72 (72)
43 KOG3226|consensus 99.0 6.1E-10 1.3E-14 115.6 6.4 83 144-227 314-396 (508)
44 cd01223 PH_Vav Vav pleckstrin 98.7 5.7E-08 1.2E-12 87.0 9.3 109 625-762 3-114 (116)
45 KOG0966|consensus 98.7 2.3E-07 4.9E-12 106.1 14.2 186 141-326 627-881 (881)
46 KOG3226|consensus 98.5 2.1E-07 4.5E-12 97.1 5.8 89 241-330 316-404 (508)
47 KOG0931|consensus 98.4 3.5E-06 7.5E-11 90.4 13.0 183 543-763 339-529 (627)
48 KOG3548|consensus 98.3 7.6E-07 1.6E-11 102.8 7.6 167 145-322 923-1160(1176)
49 KOG4362|consensus 98.2 3.1E-06 6.7E-11 97.2 8.3 163 150-316 478-677 (684)
50 PLN03122 Poly [ADP-ribose] pol 98.2 1.8E-06 4E-11 102.8 5.6 88 240-329 187-279 (815)
51 cd01225 PH_Cool_Pix Cool (clon 98.0 0.00011 2.3E-09 65.3 11.6 100 624-759 10-109 (111)
52 PF15405 PH_5: Pleckstrin homo 98.0 3.9E-05 8.4E-10 72.4 9.3 128 626-759 1-135 (135)
53 PLN03122 Poly [ADP-ribose] pol 97.9 2.3E-05 5E-10 93.6 9.2 81 144-226 186-271 (815)
54 PF00169 PH: PH domain; Inter 97.9 0.00018 3.9E-09 64.0 12.5 100 626-759 1-103 (104)
55 PLN03123 poly [ADP-ribose] pol 97.8 1.3E-05 2.8E-10 97.8 4.6 89 240-329 391-482 (981)
56 KOG2043|consensus 97.8 0.00011 2.3E-09 88.9 11.2 123 151-277 660-798 (896)
57 PLN03123 poly [ADP-ribose] pol 97.8 4.8E-05 1E-09 92.9 8.3 82 143-225 389-473 (981)
58 smart00233 PH Pleckstrin homol 97.7 0.00047 1E-08 60.4 11.9 100 627-759 2-101 (102)
59 PRK06063 DNA polymerase III su 97.7 0.00014 3E-09 79.1 8.9 73 147-220 232-306 (313)
60 PRK06195 DNA polymerase III su 97.6 0.00018 4E-09 78.3 8.5 72 147-218 220-305 (309)
61 PRK14350 ligA NAD-dependent DN 97.6 0.00015 3.3E-09 85.8 8.0 75 146-220 592-666 (669)
62 PRK14351 ligA NAD-dependent DN 97.5 0.00023 5E-09 84.7 8.3 77 145-221 607-684 (689)
63 PRK07956 ligA NAD-dependent DN 97.5 0.00023 5E-09 84.6 8.3 75 147-221 590-664 (665)
64 PF15411 PH_10: Pleckstrin hom 97.4 0.0021 4.5E-08 58.9 10.9 113 623-755 4-116 (116)
65 KOG3548|consensus 97.3 0.00092 2E-08 78.2 10.2 177 44-229 922-1162(1176)
66 TIGR00575 dnlj DNA ligase, NAD 97.3 0.00033 7.1E-09 83.3 6.6 68 146-213 583-650 (652)
67 COG0272 Lig NAD-dependent DNA 97.3 0.00057 1.2E-08 79.0 7.8 73 146-218 593-665 (667)
68 PRK14350 ligA NAD-dependent DN 97.0 0.00071 1.5E-08 80.2 5.7 73 242-315 593-666 (669)
69 cd00821 PH Pleckstrin homology 97.0 0.003 6.5E-08 54.6 8.4 82 641-757 14-95 (96)
70 cd00900 PH-like Pleckstrin hom 96.9 0.0074 1.6E-07 52.5 10.1 93 630-757 3-98 (99)
71 KOG2481|consensus 96.9 0.0011 2.5E-08 73.0 5.3 84 241-331 326-419 (570)
72 cd01233 Unc104 Unc-104 pleckst 96.9 0.012 2.5E-07 52.8 10.9 96 627-760 3-99 (100)
73 KOG0930|consensus 96.8 0.014 3.1E-07 59.6 11.3 120 604-761 230-377 (395)
74 PRK06195 DNA polymerase III su 96.7 0.0016 3.6E-08 70.8 4.9 74 241-315 219-307 (309)
75 cd01238 PH_Tec Tec pleckstrin 96.7 0.016 3.4E-07 52.5 10.2 97 627-757 1-105 (106)
76 PRK07956 ligA NAD-dependent DN 96.7 0.0022 4.8E-08 76.5 5.9 74 242-316 590-664 (665)
77 PRK06063 DNA polymerase III su 96.6 0.0022 4.7E-08 69.8 5.2 74 241-315 231-306 (313)
78 cd01244 PH_RasGAP_CG9209 RAS_G 96.6 0.016 3.5E-07 51.5 9.6 77 643-757 21-97 (98)
79 COG5275 BRCT domain type II [G 96.6 0.0075 1.6E-07 59.3 8.0 79 142-220 151-230 (276)
80 cd01246 PH_oxysterol_bp Oxyste 96.6 0.021 4.6E-07 49.7 10.0 90 629-758 2-91 (91)
81 PRK14351 ligA NAD-dependent DN 96.5 0.0032 6.9E-08 75.1 5.9 74 242-316 609-684 (689)
82 cd01251 PH_centaurin_alpha Cen 96.5 0.02 4.4E-07 51.5 9.8 34 720-760 68-101 (103)
83 cd01264 PH_melted Melted pleck 96.4 0.029 6.2E-07 50.0 9.6 83 642-759 18-101 (101)
84 TIGR00575 dnlj DNA ligase, NAD 96.3 0.0032 7E-08 75.0 4.6 67 242-309 584-651 (652)
85 KOG2043|consensus 96.3 0.0025 5.5E-08 77.3 3.7 79 248-330 662-741 (896)
86 cd01252 PH_cytohesin Cytohesin 96.1 0.084 1.8E-06 49.3 11.9 100 628-762 2-116 (125)
87 cd01260 PH_CNK Connector enhan 96.1 0.046 9.9E-07 48.4 9.6 90 629-758 3-96 (96)
88 COG5163 NOP7 Protein required 96.0 0.0053 1.1E-07 65.5 3.5 83 241-330 349-442 (591)
89 KOG0966|consensus 95.9 0.0079 1.7E-07 70.0 4.9 82 242-324 633-718 (881)
90 KOG0323|consensus 95.9 0.0065 1.4E-07 70.6 4.0 100 238-338 437-541 (635)
91 KOG3522|consensus 95.9 0.033 7.2E-07 65.4 9.6 104 393-501 6-111 (925)
92 COG0272 Lig NAD-dependent DNA 95.8 0.011 2.4E-07 68.7 5.4 72 241-313 593-665 (667)
93 cd01255 PH_TIAM TIAM Pleckstri 95.8 0.13 2.9E-06 47.6 11.1 126 624-762 25-157 (160)
94 cd01257 PH_IRS Insulin recepto 95.7 0.11 2.4E-06 46.5 10.4 53 695-757 48-100 (101)
95 cd01236 PH_outspread Outspread 95.7 0.096 2.1E-06 47.1 9.8 79 643-757 24-102 (104)
96 cd01250 PH_centaurin Centaurin 95.7 0.095 2.1E-06 45.8 9.7 92 629-757 2-93 (94)
97 cd01247 PH_GPBP Goodpasture an 95.6 0.13 2.8E-06 45.2 10.2 89 629-757 2-90 (91)
98 cd01245 PH_RasGAP_CG5898 RAS G 95.5 0.076 1.6E-06 47.1 8.2 53 697-757 45-97 (98)
99 cd01235 PH_SETbf Set binding f 95.2 0.19 4.1E-06 44.8 10.2 94 629-759 2-101 (101)
100 cd01265 PH_PARIS-1 PARIS-1 ple 95.0 0.18 3.9E-06 44.6 9.3 51 696-758 43-93 (95)
101 KOG1729|consensus 95.0 0.0066 1.4E-07 64.3 -0.0 111 616-765 36-146 (288)
102 PTZ00283 serine/threonine prot 94.7 1.1 2.4E-05 52.3 17.5 55 700-760 435-490 (496)
103 KOG2481|consensus 94.4 0.037 8E-07 61.5 3.8 75 145-227 325-410 (570)
104 cd01241 PH_Akt Akt pleckstrin 94.2 0.53 1.1E-05 42.2 10.5 34 627-661 2-36 (102)
105 cd01266 PH_Gab Gab (Grb2-assoc 94.1 0.4 8.7E-06 43.5 9.6 23 734-757 84-106 (108)
106 cd01263 PH_anillin Anillin Ple 93.7 0.63 1.4E-05 43.1 10.1 103 628-757 3-121 (122)
107 KOG4362|consensus 93.4 0.089 1.9E-06 61.4 4.8 82 245-330 478-565 (684)
108 KOG0323|consensus 93.3 0.04 8.6E-07 64.3 1.8 81 145-225 439-523 (635)
109 cd01253 PH_beta_spectrin Beta- 92.8 1.4 3.1E-05 39.4 10.9 81 643-757 23-103 (104)
110 COG5163 NOP7 Protein required 92.6 0.085 1.8E-06 56.6 3.0 73 146-226 349-433 (591)
111 COG5275 BRCT domain type II [G 92.5 0.17 3.6E-06 50.1 4.5 75 241-316 155-231 (276)
112 cd01256 PH_dynamin Dynamin ple 92.1 1.9 4.2E-05 37.7 9.9 100 627-758 2-104 (110)
113 KOG2093|consensus 90.9 0.15 3.4E-06 60.2 2.8 173 146-326 46-243 (1016)
114 cd01230 PH_EFA6 EFA6 Pleckstri 90.0 6 0.00013 36.4 11.9 88 643-762 26-114 (117)
115 cd01237 Unc112 Unc-112 pleckst 88.5 2.9 6.3E-05 37.5 8.3 39 720-759 65-103 (106)
116 PF14593 PH_3: PH domain; PDB: 88.4 16 0.00034 32.9 13.0 98 618-763 5-103 (104)
117 KOG2059|consensus 88.3 4.4 9.6E-05 47.4 11.7 85 643-765 586-670 (800)
118 KOG0521|consensus 87.3 14 0.00031 45.2 16.0 168 392-570 30-201 (785)
119 PF15413 PH_11: Pleckstrin hom 85.5 9.7 0.00021 34.7 10.5 32 628-660 1-34 (112)
120 PF15409 PH_8: Pleckstrin homo 84.0 14 0.00031 32.1 10.1 51 694-758 38-88 (89)
121 PRK05601 DNA polymerase III su 81.2 5.3 0.00012 44.1 7.9 73 147-220 294-368 (377)
122 PTZ00267 NIMA-related protein 80.8 24 0.00052 41.0 13.9 101 625-759 376-476 (478)
123 cd01243 PH_MRCK MRCK (myotonic 80.4 40 0.00086 31.0 11.8 44 716-759 76-119 (122)
124 KOG0690|consensus 78.5 2.7 5.8E-05 44.9 4.4 43 717-762 77-119 (516)
125 PF15410 PH_9: Pleckstrin homo 76.6 21 0.00046 32.8 9.5 91 643-759 26-118 (119)
126 cd01254 PH_PLD Phospholipase D 73.6 22 0.00047 32.9 8.7 35 717-758 87-121 (121)
127 PRK05601 DNA polymerase III su 71.1 6.6 0.00014 43.4 5.3 74 242-316 294-369 (377)
128 PF15406 PH_6: Pleckstrin homo 67.8 16 0.00034 32.8 5.9 32 718-756 79-110 (112)
129 PF12210 Hrs_helical: Hepatocy 66.7 64 0.0014 28.3 9.2 53 415-470 2-54 (96)
130 COG5067 DBF4 Protein kinase es 65.6 5.6 0.00012 43.3 3.3 56 138-194 113-168 (468)
131 PF15277 Sec3-PIP2_bind: Exocy 65.0 52 0.0011 28.8 8.7 59 692-761 32-90 (91)
132 cd01231 PH_Lnk LNK-family Plec 57.5 16 0.00034 32.3 4.0 34 718-757 73-106 (107)
133 PF12814 Mcp5_PH: Meiotic cell 54.6 1.1E+02 0.0023 28.4 9.5 36 720-760 87-122 (123)
134 cd01249 PH_oligophrenin Oligop 53.3 75 0.0016 28.6 7.7 34 718-756 69-102 (104)
135 cd01242 PH_ROK Rok (Rho- assoc 52.7 30 0.00065 31.3 5.1 39 716-759 72-110 (112)
136 KOG2093|consensus 47.6 19 0.00041 43.6 3.8 88 240-330 45-133 (1016)
137 PLN00188 enhanced disease resi 36.5 1.9E+02 0.004 35.0 9.7 106 627-762 5-112 (719)
138 COG5067 DBF4 Protein kinase es 35.0 26 0.00057 38.3 2.3 49 240-289 120-168 (468)
139 cd01240 PH_beta-ARK Beta adren 34.9 1.1E+02 0.0024 27.7 5.7 98 627-763 4-102 (116)
140 KOG2424|consensus 30.4 66 0.0014 31.7 3.9 124 47-194 2-141 (195)
141 PF14643 DUF4455: Domain of un 27.7 1E+03 0.022 27.6 20.1 182 393-594 75-260 (473)
142 PF04722 Ssu72: Ssu72-like pro 27.4 17 0.00037 36.2 -0.5 119 51-195 2-140 (195)
143 PF07462 MSP1_C: Merozoite sur 25.6 8.1E+02 0.018 28.6 11.9 73 481-568 19-91 (574)
144 PF08336 P4Ha_N: Prolyl 4-Hydr 24.7 5.8E+02 0.012 23.8 10.1 74 453-526 5-83 (134)
145 PRK13194 pyrrolidone-carboxyla 24.5 87 0.0019 32.0 3.9 74 16-89 70-144 (208)
146 PRK13195 pyrrolidone-carboxyla 23.9 1.3E+02 0.0029 31.0 5.1 74 16-89 71-148 (222)
147 PF00611 FCH: Fes/CIP4, and EF 21.0 3.9E+02 0.0084 22.5 6.9 64 401-467 27-90 (91)
148 PF08458 PH_2: Plant pleckstri 20.9 6.4E+02 0.014 23.0 10.1 29 735-764 80-108 (110)
149 cd07599 BAR_Rvs167p The Bin/Am 20.9 8.9E+02 0.019 24.6 11.9 39 544-582 95-133 (216)
No 1
>KOG3524|consensus
Probab=100.00 E-value=7.8e-88 Score=732.43 Aligned_cols=730 Identities=31% Similarity=0.476 Sum_probs=611.2
Q ss_pred CCCCCCceeEEEeecccCcHHHHHHHhhCC-CceEeecCC-----------ceEEecCCCCCcccccccccccchhhhCC
Q psy2293 44 DTEPGMPCQICVCSNVDQTETFKKALASFN-VPVVLVEDP-----------DYFVHAKFDGPIIIVTSEFTNNFLRFHKP 111 (832)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~v~~~f~g~~i~~~~~~~~~f~~~~~~ 111 (832)
-.+.....++|+|++..++.++.+.-++.+ ++++..+.. ..++..+|++-- |...++.
T Consensus 14 ~~i~sl~~~~~~v~~~~~~~~~le~q~e~~~i~i~q~dt~~dL~ge~sd~~~f~v~~d~~~~~----------~~~~h~e 83 (850)
T KOG3524|consen 14 KTIQKLAVSKKDVHDFKDIFEMLEEQKEKRNINIIQYDSLDDLSGDWSDYTFFCVNFDSDLFR----------TLTKHQE 83 (850)
T ss_pred hhhhhccccceeccchhHHHHhhhhhhhccceeccccchHhHhhhhhhhceeeeeecchhhhh----------hhhcccc
Confidence 356667779999999888888888777777 677765321 155666665544 4444443
Q ss_pred -CCCeEeCHHHHHHHHHhccccccCCCCCCCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEE
Q psy2293 112 -PQSRILGPTALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLI 190 (832)
Q Consensus 112 -~~~~i~gp~~v~~~~~~~~~~~~~lp~~~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLI 190 (832)
..+-|+|-..|..-+-+++. ...-+..+|+||+.|+|++.||||+.++++ +++++|+.|||.++++++.++||+|
T Consensus 84 ~E~~~~~~~~~~~~k~~~ae~--~~tl~~srply~~~m~~vvlcfTg~rkk~e--~lv~lvh~mgg~irkd~nsktthli 159 (850)
T KOG3524|consen 84 TEALFIIGASVLKNKLLKAED--LMTLRAARPLYCELMKDVVMCFTGERKKKE--ELVDLVHYMGGSIRKDTNSKTTHLI 159 (850)
T ss_pred ceeeccccHHHHHHHHHHHHh--hhccccCCcccchhhcCceeeeeccchhhH--HHHHHHHHhcceeEeeeccCceEEE
Confidence 12334444444444433331 133347899999999999999999997664 9999999999999999999999999
Q ss_pred eccCCChhhHHHhhcCCCeeeHHHHHHHHHcCCcCCCCCCChhhhhhhhhcccccceEEecCCChhhHHHHHHHHHhCCC
Q psy2293 191 ANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGG 270 (832)
Q Consensus 191 a~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~~~~~~~~~~~~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG 270 (832)
|+..+++||..|... .|+|.|.||..||..+....+.++.+.|.+.|++++|+|+.|+|.||..++...|.+..+..||
T Consensus 160 ~n~s~gek~~~a~t~-~~~~rp~wv~~aw~~rn~~yfda~~~~f~d~hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg 238 (850)
T KOG3524|consen 160 ANKVEGEKQSIALVG-VPTMRPDWVTEAWKHRNDSYFDAMEPCFVDKHRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGG 238 (850)
T ss_pred eecccceEEEEEeec-cceechHhhhhhhcCcchhhhhhhccchhhhhccccccCCeEeecCCcHHHHHHHHHHHHhcCC
Confidence 999999999999987 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcCccccccccccCCCC-----------CCCchhhh
Q psy2293 271 KPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGKNF-----------RTPDRAAK 339 (832)
Q Consensus 271 ~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~~~~~-----------~~p~~~~~ 339 (832)
++. . .+..|||||+++.+.+-.+.+.+.+.++|..+|||-+|++|.|+.|.+|++..+. .+|.+.++
T Consensus 239 ~~a-~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ewfw~siq~g~~a~e~~yl~~~~~~~~~p~~~~~~s~pis~~k 316 (850)
T KOG3524|consen 239 KLA-P-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEWFWVSIQRGCCAIEDNYLLPTGKLHRKPLESSSVSSPISKSK 316 (850)
T ss_pred ccc-C-CCCCceeEeecCCccccccccccccceeecccceEEEEecchhccccceeccccceeccccccCcccccchhhh
Confidence 999 4 8899999999999999999999999999999999999999999999999987752 15666666
Q ss_pred hhhhhhhc-ccCCCCCCCCCCCcccccCCCC------ccCCCCccccCCCCCCCC-CcccccccCCCchhHHHHHHHHHH
Q psy2293 340 RKRLMEVV-EEPHSSPRKSRKKRTSDIDGTP------RYSCGSLLDYTTSPDNFL-ATDESDVMIKGNSPRHQVFKELCQ 411 (832)
Q Consensus 340 ~~rLsq~~-~~~~~~p~~~~~~r~S~~~~~~------~~s~~s~~d~s~s~~~~~-~~~~~~~~~~~~~kRq~vi~ELl~ 411 (832)
|+|.+.+. ...+.++.++..+|.+. .+. +.|.+|..|.+.+|.... ..+...+.+++.+-|-.+..++..
T Consensus 317 r~r~~~S~~~~r~~t~~g~~~~R~t~--~~i~s~~d~~~sc~Ss~~~s~t~k~~~~~~etsk~~psk~s~r~~~~~~~y~ 394 (850)
T KOG3524|consen 317 RSRNSRSLSSMRDCTVEGPTSLRMTP--DYIYSNDDVENSCKSSRQPSKRLKVCMEMVETSKNYPSKLSLRVKFKEALYC 394 (850)
T ss_pred hhcCchhHHHHhcCcccCCCCcccCC--cccccccccccCcCCcCCcccCcHHHHhccCCCcccchhhcccccchHHHHH
Confidence 66665533 12235666666666653 221 223344444443333221 122255667788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHhHHH
Q psy2293 412 TESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTA 491 (832)
Q Consensus 412 TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~Ig~vfl~~~~~ 491 (832)
||.+|+..|..+.+.|..+|+.......+++.+.+++.+|+|+++|..+|..+...|....+.|.+.. +.
T Consensus 395 tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e~k----------~e 464 (850)
T KOG3524|consen 395 TESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIEAK----------EE 464 (850)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHHHH----------HH
Confidence 99999999999999999999998888899999999999999999999999999999999988886644 55
Q ss_pred HhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCC
Q psy2293 492 FKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSK 570 (832)
Q Consensus 492 f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~ 570 (832)
+.+.|..|++.|+...+.+..|... |+|++|++..++ .|+|+++.|.+++++|+||++...|||++|.| ..
T Consensus 465 l~kayppyvnffet~ke~~~~cdre~prfhaflKinq~------kpecgRq~l~dlmirpvqrlpsvilllndl~k--~s 536 (850)
T KOG3524|consen 465 LKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQS------KPECGRQKLTDLMIRPVQRLPSVILLLNDMAK--KS 536 (850)
T ss_pred HHHhccchhhHHHHhHHHHHHHhccchHHHHHHHcccc------chhhhhhcccchhccchhhhhHHHHHHHHHHh--hc
Confidence 6689999999999999999999888 999999999999 99999999999999999999999999999999 45
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEE-EecccccCCccEEEEE
Q psy2293 571 SSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVI-ELSNMLSHRGDCITLF 649 (832)
Q Consensus 571 ~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~-~~~~~~~~k~~~~~lf 649 (832)
+++|+..+++|...++++..+||+.++++|++..++++...|+|||..|++.+|-|+.+.++. .++....+++..+.||
T Consensus 537 ~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa~lvssnrsfi~~lev~i~l~~~~~~rg~~~~l~ 616 (850)
T KOG3524|consen 537 DNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPAILVSSNRSFIRELEVSIALTSPGLQRGAKMKLF 616 (850)
T ss_pred cCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCchhheeccchHHHHhhhhhhhcCcccccccceeee
Confidence 778999999999999999999999999999999999999999999999999999999999884 5566666788999999
Q ss_pred EeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCC
Q psy2293 650 LFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGS 729 (832)
Q Consensus 650 LF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~ 729 (832)
||+|+++|||.+.+..+.+.+|.. ++ ..+|||+.+|||++|+.|.||++. +.|+|+|.|.++++
T Consensus 617 lf~dvlei~k~r~~~~~tF~S~hs----------~t----r~p~KhI~li~LntIr~V~dIrE~--~~cpnAF~lllr~~ 680 (850)
T KOG3524|consen 617 LFHDVLEITKIRLARHASFASLHS----------RQ----RRPYKHIDLIQLNTIRSVFDIREI--AKCPNAFVLLLRHR 680 (850)
T ss_pred hhhhHHHHHHHhHhhhccccCCCC----------CC----CCcccceeeccHHHHHHHhhhhhh--ccCccceEEEEeCc
Confidence 999999999999766677777754 23 334999999999999999999988 88999999999999
Q ss_pred ccccceEEEEEecCCh-HHHHHHHHHHH-HHHHHhhcc-CccchhhcccccCCCCc-ccccccchhhhHHHHHHHHHh--
Q psy2293 730 DEVIETTYSFNIIDDT-LDKMSFLRELC-RQASAVYCI-NFDKFLEDISLANASSF-NIETHESSNSTLGRAIKFASK-- 803 (832)
Q Consensus 730 ~~~~~~~~~l~a~sse-~eK~~Wl~~L~-~~i~~~~~~-d~~~~~~~~~~~~~~el-~~~~~di~~~tl~~a~~~~~~-- 803 (832)
+++......|+.++.| ..+.+|++.|| +++++..|+ |+++.+. ...|.++ ...+.|+. +||++|.+.+.|
T Consensus 681 ~EQ~~v~~~Fq~tdDE~p~e~~y~K~LC~~hvA~~~ck~dA~nl~~---~~~pqs~f~~~t~~m~-STLS~A~~~~kKT~ 756 (850)
T KOG3524|consen 681 DEQGGIDTVFESNDDEDPSDMRYFKNLCGPHGAQMNCTEDAHNLSF---MPPPQSQFSNAQLTLA-STLSFARNQSRKTL 756 (850)
T ss_pred hhhcCeeEEEEecccccchhhHHHHHHhhHhhhcceeccchhccee---cCChHHhhhhhhhhHH-HHHHHHHHHHHHHH
Confidence 9888888889987766 34566999999 799999999 9998887 6667773 55566666 999999999977
Q ss_pred -hhccccccccCchhHHHHhhh-ccccCC
Q psy2293 804 -QVGRTLSLNRTPSTLRKVMSS-MKVRVA 830 (832)
Q Consensus 804 -~~~r~~S~~~~p~~l~ra~~~-~~~~~~ 830 (832)
+|+|||||+|||++.+|+++. +|++++
T Consensus 757 ~KV~RAfSF~KTPk~a~r~~~~a~mTs~G 785 (850)
T KOG3524|consen 757 GKVNRAFSFLKTPRVSCRPAALANMTSVG 785 (850)
T ss_pred hhhhhhcccccCchhhhhHHHHhhccCcC
Confidence 999999999999997775543 344444
No 2
>KOG3523|consensus
Probab=100.00 E-value=2.9e-51 Score=442.22 Aligned_cols=381 Identities=18% Similarity=0.234 Sum_probs=324.5
Q ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHH
Q psy2293 389 TDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDL 468 (832)
Q Consensus 389 ~~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L 468 (832)
.++++.++..++|+|++++|+|++|.+|++.|++++++|+..-.-. .+++..+.+.+|+||.++.+++++||.+|
T Consensus 245 sglL~tls~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~l~-----~~Ls~~d~~~LFSni~~V~~~Serfl~dL 319 (695)
T KOG3523|consen 245 SGLLETLSPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKELR-----STLSASDRHHLFSNIQDVREVSERFLCDL 319 (695)
T ss_pred cccccccCHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHHHH-----HhcChHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4458899999999999999999999999999999999999774433 67999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHh
Q psy2293 469 KYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLL 547 (832)
Q Consensus 469 ~~~~~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slL 547 (832)
+.+++++.....|+||+.+|++.++.+|+.||.|+.+...++++++.. +.|.+.+.+.+. +|.|++|+|.+||
T Consensus 320 E~r~e~ni~i~dicDiv~~ha~~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~------~p~C~~Lpl~SFL 393 (695)
T KOG3523|consen 320 EARLEENIFIDDICDIVEDHAAKHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLES------SPKCQGLPLRSFL 393 (695)
T ss_pred HHHHHhCchhhHHHHHHHHhcccccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhc------CccccCCCchhhh
Confidence 999999888899999999999999999999999999999999999877 999999999999 9999999999999
Q ss_pred hhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccC---CCCccccCCC
Q psy2293 548 IRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIEN---CPPQLINSHR 624 (832)
Q Consensus 548 i~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~---~~~~L~~~~R 624 (832)
|.|+|||+||+||+++|++.|.+.+++|+...+|++.++.++..||+..++|+..++|..|.++|++ +.++|++..|
T Consensus 394 iLPmQRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~kvK~~PLiS~sR 473 (695)
T KOG3523|consen 394 ILPMQRITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFKKVKAFPLVSQSR 473 (695)
T ss_pred hchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeeeccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 3678999999
Q ss_pred eEEeeeeEEEecccc-----cC--CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEE
Q psy2293 625 SFVLKCDVIELSNML-----SH--RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIK 697 (832)
Q Consensus 625 ~li~~g~l~~~~~~~-----~~--k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~ 697 (832)
+|+++|+|+.+.... .+ ..+.+|+|||||+|||||+|..+....+. |....
T Consensus 474 wLvk~GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~Llitk~k~~~~f~V~D----------------------ya~r~ 531 (695)
T KOG3523|consen 474 WLVKRGELTQLVERRASPLLFSKRLSKTVYLFLFNDLLLITKKKSEGSFQVFD----------------------YAPRS 531 (695)
T ss_pred hhhhccccceeecccccchhhcccccceeeeeeecceeeEeeecCCCceEEee----------------------ccchh
Confidence 999999998776322 11 24699999999999999999876432221 33333
Q ss_pred eecccccceEeeecC--CCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH------HhhccCccc
Q psy2293 698 LLSMTSIKKVYNVED--EAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS------AVYCINFDK 769 (832)
Q Consensus 698 ~i~L~~i~~v~~i~d--~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~------~~~~~d~~~ 769 (832)
.+.+..+.-...+.. .......|.|.+.+..+++++...+.|.|. +++||++||.+|+.... -+.++||||
T Consensus 532 ~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a~-s~Sd~~RWi~Al~p~~~~~~~~~i~e~~dcpQ 610 (695)
T KOG3523|consen 532 LLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLSAE-SQSDRQRWISALRPPSSTKPPEKIYEEWDCPQ 610 (695)
T ss_pred hhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeecCC-chHHHHHHHHhcCCCCCCCChhhhhhccCCCh
Confidence 333222200000100 001234589999999999999999999985 57799999999984221 134449998
Q ss_pred h--hhcccccCCCCcccccccchhhhHHHHHHHHHh
Q psy2293 770 F--LEDISLANASSFNIETHESSNSTLGRAIKFASK 803 (832)
Q Consensus 770 ~--~~~~~~~~~~el~~~~~di~~~tl~~a~~~~~~ 803 (832)
+ +++|.+.+||||+++.+|+++.+-+....|+..
T Consensus 611 v~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~G 646 (695)
T KOG3523|consen 611 VQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEG 646 (695)
T ss_pred hheeeccccCCCceeeeehhhhhhhhhcCCCccccc
Confidence 8 679999999999999999997777777888855
No 3
>KOG4424|consensus
Probab=100.00 E-value=1.6e-45 Score=397.46 Aligned_cols=308 Identities=21% Similarity=0.327 Sum_probs=275.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHhcCCC
Q psy2293 399 NSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKD-LLKDLKYLEQNYSD 477 (832)
Q Consensus 399 ~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~-fl~~L~~~~~~~~~ 477 (832)
..++.++++||+.||+.||+.|++|.++|..+|... ..++.+.+..||+||..|+.+|.. ||..|+.++
T Consensus 64 ~qk~~~iaqEll~tE~~Yv~~L~lLd~~F~~~L~~~-----~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~----- 133 (623)
T KOG4424|consen 64 LQKLRHIAQELLDTERTYVKRLHLLDQVFCRRLLEE-----ASIPADVITGLFGNISSIHNFHGQFLLPELEKRI----- 133 (623)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH-----
Confidence 689999999999999999999999999999999887 468999999999999999999966 566676665
Q ss_pred CCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhh
Q psy2293 478 SVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGS 556 (832)
Q Consensus 478 ~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~r 556 (832)
||+||.+.+| |+++|..|+.||+.|..++..+.+. |.|+.+++++++ .+.|++++|.++|+.|||||||
T Consensus 134 ---Iadv~qKlAP-FLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek------~~~cg~l~LqhhMiePVQRIPR 203 (623)
T KOG4424|consen 134 ---IADVFQKLAP-FLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEK------QPECGGLKLQHHMIEPVQRVPR 203 (623)
T ss_pred ---HHHHHHHhhh-HHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhh------chhcCCccchhheechhhhhhH
Confidence 9999999999 7799999999999999999999988 999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEEEec
Q psy2293 557 ISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELS 636 (832)
Q Consensus 557 Y~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~~~~ 636 (832)
|.|||+++++++|++.+|+.++++|++.|...+.|+|..++++|+.++|++++.++.+ ..+|++|+|.||++|.+.+++
T Consensus 204 YeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~-e~dIV~PsreLiKEG~l~Kis 282 (623)
T KOG4424|consen 204 YELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGN-EEDIVSPSRELIKEGQLQKIS 282 (623)
T ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccccCcHHHHhhccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999977 789999999999999999998
Q ss_pred ccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCc
Q psy2293 637 NMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHD 716 (832)
Q Consensus 637 ~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~ 716 (832)
.. ++...+||+|||||++++|+++.... ..+|.....+.+..+....+ +. +
T Consensus 283 ~k-~~~~qeRylfLFNd~~lyc~~r~~~~------------------------~~k~~~r~~~s~~~~~v~~~--~~--~ 333 (623)
T KOG4424|consen 283 AK-NGTTQERYLFLFNDILLYCKPRKRLP------------------------GSKYEVRARCSISHMQVQED--DN--E 333 (623)
T ss_pred cc-CCCcceeEEEEehhHHHhhhhhhhcc------------------------cceeccceeeccCcchhccc--cc--c
Confidence 53 57789999999999999999886331 22377777777777743333 22 4
Q ss_pred ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 717 NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 717 ~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
+..+.|.+... .+...|++.+ +.+|+.|++.|+.+|.++.
T Consensus 334 ~~~~tF~~~G~------~r~vel~a~t-~~ek~eWv~~I~~~Id~~k 373 (623)
T KOG4424|consen 334 ELPHTFILTGK------KRGVELQART-EQEKKEWVQAIQDAIDKHK 373 (623)
T ss_pred cCCceEEEecc------cceEEeecCc-hhhHHHHHHHHHHHHHHHH
Confidence 56799999764 4578899765 5599999999999998754
No 4
>KOG4305|consensus
Probab=100.00 E-value=2.6e-39 Score=376.34 Aligned_cols=396 Identities=20% Similarity=0.260 Sum_probs=303.2
Q ss_pred CCchhhhhhhhhhhcccCCCCCCCCCCCcccccCCCCccCCCCccccCCCCCCCCCcccccccCCCchhHHHHHHHHHHH
Q psy2293 333 TPDRAAKRKRLMEVVEEPHSSPRKSRKKRTSDIDGTPRYSCGSLLDYTTSPDNFLATDESDVMIKGNSPRHQVFKELCQT 412 (832)
Q Consensus 333 ~p~~~~~~~rLsq~~~~~~~~p~~~~~~r~S~~~~~~~~s~~s~~d~s~s~~~~~~~~~~~~~~~~~~kRq~vi~ELl~T 412 (832)
.+.+..|.+|++|..... ....+... |++ + -.++..+|..++...+++.++++|+|||++|.||+.|
T Consensus 280 ~cysiscp~~leq~~~~~-~k~~~~~~-~~~----------s-~d~~~~~W~~s~d~~~le~ls~rEikRQe~I~Eli~t 346 (1029)
T KOG4305|consen 280 LCYSISCPRRLEQQARLE-LKLSSGLK-RSS----------S-EDEEEKLWSESVDLSVLESLSPREIKRQEAIFELIYT 346 (1029)
T ss_pred hcccccCccccccchhhh-hccchhhc-CCC----------C-ccccchhhhhcCchHhHhhcCHHHhhhhheeEEEEee
Confidence 444556888888876554 22222222 211 1 1223445555555556899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHH----HHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHh
Q psy2293 413 ESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAE----MKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKH 488 (832)
Q Consensus 413 E~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~----~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~Ig~vfl~~ 488 (832)
|++||++|+++.+.|++||.+. .++++++ +..+|+|+++|+.+|+.||.+|..+....+....|||||++|
T Consensus 347 E~d~v~dLel~re~y~kpl~~S-----~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r~k~~G~V~~IGdIll~~ 421 (1029)
T KOG4305|consen 347 EEDFVADLELAREIYRKPLLES-----SIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVRQKLSGVVEGIGDILLAW 421 (1029)
T ss_pred hhHHHHHHHHHHHHHhChHhhh-----ccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHH
Confidence 9999999999999999999986 6788888 999999999999999999999999998888899999999999
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhh
Q psy2293 489 CTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKN 567 (832)
Q Consensus 489 ~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~ 567 (832)
++.| +.|..||+++..|..+++..++. ++|++|++++++ .|.|++++|.+||.+|+||+.||||||++|||+
T Consensus 422 lp~~-~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~------sp~~rkl~L~~FL~kp~sRl~RYpLllr~ILk~ 494 (1029)
T KOG4305|consen 422 LPKA-EPYISYGANQAYAKALIEQKKKQNPRFARFLKECES------SPESRKLDLVSFLTKPTSRLQRYPLLLREILKH 494 (1029)
T ss_pred hhhh-hHHHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHh------ChhhhccchhhhhccccchhheeeHHHHHHHhc
Confidence 9999 67999999999999999988666 999999999999 999999999999999999999999999999999
Q ss_pred C-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCC-----CCccccCCCeEEeeeeEEEecccccC
Q psy2293 568 T-SKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENC-----PPQLINSHRSFVLKCDVIELSNMLSH 641 (832)
Q Consensus 568 t-~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~-----~~~L~~~~R~li~~g~l~~~~~~~~~ 641 (832)
| |..|||++.|.+|+++++.++.++|...+..|+..++..+..++-.. ...+.++.|.|+.+|.+...... +.
T Consensus 495 TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qllfe~~e~~~L~l~d~~R~l~fkgil~~~~~~-~~ 573 (1029)
T KOG4305|consen 495 TDPENHPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLLFEPGEAVNLGLNDPERKLIFKGILKRKELS-KT 573 (1029)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhhccccccccccccChhhhcceeeeeeecccc-cc
Confidence 9 66679999999999999999999999999999999999998887543 45677889999999998775432 23
Q ss_pred CccEE-EEEEeCCeEEEEEecCCCc-----ccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCC
Q psy2293 642 RGDCI-TLFLFTDVVEVCKKRSKYV-----NVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAH 715 (832)
Q Consensus 642 k~~~~-~lfLF~D~Lli~k~k~~~~-----~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~ 715 (832)
++... |.|||+|.+|++++.+... .++..|.....+... .....+..+.| +..+|+..+.....-..+
T Consensus 574 ~~~~~~~~fLl~d~lLLt~~~k~~~~~~~~kvf~RPiPl~lL~~~--~~~dn~~~k~Y--~sp~~~~~~~v~l~~~~~-- 647 (1029)
T KOG4305|consen 574 DGTKEDYIFLLLDNLLLTRKVKQNNKRHRHKVFSRPIPLDLLSLS--PSEDNPSYKSY--KSPIPLASVTVALPDKPT-- 647 (1029)
T ss_pred CCCccceeehhhhhhhhhhhhhhccccccceeeccCcchhhhccc--ccccchhhhcc--CCCCcchhhhhhcccCCC--
Confidence 34444 9999999999987654332 234444432222110 00111112122 234555554222222222
Q ss_pred cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 716 DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 716 ~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
.+..+ |.+++.+. ....|++.+.+.. +++.|++++.++...+..+
T Consensus 648 s~~~~-~~~~~~ga---~~~~ftly~~s~~-~r~~w~ekI~~aq~~~le~ 692 (1029)
T KOG4305|consen 648 SNVKN-FFLYLGGA---RGASFTLYAESLN-GRDQWVEKIKQAQKRSLER 692 (1029)
T ss_pred CCccc-hhheeccc---cceEEEeeccchH-HhhhHHhhhhHHHHhhhhh
Confidence 23334 44444433 4678999987655 9999999999998876654
No 5
>KOG3520|consensus
Probab=100.00 E-value=7.4e-39 Score=372.93 Aligned_cols=340 Identities=21% Similarity=0.303 Sum_probs=291.0
Q ss_pred CCCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHH
Q psy2293 382 SPDNFLATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461 (832)
Q Consensus 382 s~~~~~~~~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h 461 (832)
+|...++.+.+..+.+...|||++|+||++||+..|+.|++|..+|..+|.+. .+++++++..||.|+++|+++|
T Consensus 371 sWs~~V~~e~L~~lk~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~e-----~~~~~~~l~~LFP~LdeL~eiH 445 (1167)
T KOG3520|consen 371 SWSEAVPSEVLKGLKKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQPMMEE-----LLFPQEELNKLFPCLDELIEIH 445 (1167)
T ss_pred chhhccCHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHhcccHHHHHHHH
Confidence 44555666668888899999999999999999999999999999999999987 6899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-CCchHHHHHHh-----HHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCC
Q psy2293 462 KDLLKDLKYLEQNYSD-SVSIGEVFVKH-----CTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLG 534 (832)
Q Consensus 462 ~~fl~~L~~~~~~~~~-~~~Ig~vfl~~-----~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~ 534 (832)
..|+..|.++..+|.. ...|||+++.+ .+.|.++|..||.++..|.+.++.+..+ ++|.+|++++++
T Consensus 446 ~~f~~~lk~rr~e~~~vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS------ 519 (1167)
T KOG3520|consen 446 SSFLQRLKERRKESLVVIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAES------ 519 (1167)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhc------
Confidence 9999999999999987 78899999995 6789999999999999999999998877 999999999999
Q ss_pred CCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccC
Q psy2293 535 LPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIEN 614 (832)
Q Consensus 535 ~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~ 614 (832)
+|.|+++.|.+++..-+|||+||||||+.|+|+|.....|++.|+.|++.+++|+..+|+.++.+|+.++|.+|+++++.
T Consensus 520 ~p~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~ 599 (1167)
T KOG3520|consen 520 NPVCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDA 599 (1167)
T ss_pred chHHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999984
Q ss_pred CCC----------ccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccc
Q psy2293 615 CPP----------QLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQ 684 (832)
Q Consensus 615 ~~~----------~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~ 684 (832)
.+. ++--..|+|||+|.|++... .+|.+++|++||+|+||+..++..+ ..++++..
T Consensus 600 ~s~~~~~~~~~F~kldLt~rkLihdG~Ltwk~~--~gk~~dv~vlLLtD~LvlLqeqD~K-yifksl~~----------- 665 (1167)
T KOG3520|consen 600 KSLSKYKNGEEFRKLDLTRRKLIHDGPLTWKTA--RGKTKDVHVLLLTDILVLLQEKDQK-YIFKSLDK----------- 665 (1167)
T ss_pred hhhhhccccchhhhhhhhhhheeccCceEEeec--cCchhhhHHHHHHHHHHHhhhcCce-eEeecccc-----------
Confidence 321 12223799999999998653 4778999999999999999887764 44544321
Q ss_pred cCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 685 AKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 685 ~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
....|+|..+ .|.++.. ++++|-|..... ..-.+|.+.|.+.. ||+.|++-|++++.....
T Consensus 666 ----------~spVisL~~l-ivRevAt-----d~ka~FlIs~s~--~~pqmYEL~a~T~s-erntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 666 ----------KSPVISLQKL-IVREVAT-----DEKAFFLISMSD--QGPEMYELVAQSKS-ERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred ----------CCCceehHHH-HHHHHhc-----cccceEEEecCC--CCCeeEEEecCCHH-HHHHHHHHHHHHHHhCCc
Confidence 2334677766 3444332 346666666542 23579999986655 999999999999986554
Q ss_pred c
Q psy2293 765 I 765 (832)
Q Consensus 765 ~ 765 (832)
.
T Consensus 727 ~ 727 (1167)
T KOG3520|consen 727 N 727 (1167)
T ss_pred c
Confidence 3
No 6
>KOG2996|consensus
Probab=100.00 E-value=2.5e-35 Score=315.25 Aligned_cols=335 Identities=24% Similarity=0.337 Sum_probs=267.9
Q ss_pred hHHHhHhcCccccccccccCCCCCCCchhh---hhhhhhhhc--ccCCCCCCCCCCCcccccCCCCccCC-CCccccC--
Q psy2293 309 WFWMSIQNSECADESKYLFGKNFRTPDRAA---KRKRLMEVV--EEPHSSPRKSRKKRTSDIDGTPRYSC-GSLLDYT-- 380 (832)
Q Consensus 309 Wl~~si~~g~~~~E~~Y~~~~~~~~p~~~~---~~~rLsq~~--~~~~~~p~~~~~~r~S~~~~~~~~s~-~s~~d~s-- 380 (832)
++.-|-..=++-+.+.|.-.+.+...+|++ ..+|||.+. .+.+..|++.. ..|..|.+. +++ .+..|..
T Consensus 78 Fl~~C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ial~rGi~PFPte--eese~D~dI-Y~sL~d~ide~d~ 154 (865)
T KOG2996|consen 78 FLMFCCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPIALNRGIRPFPTE--EESENDEDI-YQSLHDLIDETDP 154 (865)
T ss_pred HHHHHHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccChHHHhcCCCCCCCh--hhccChHHH-HHhHHhhhhccCc
Confidence 556666665666666666666677788888 556666644 45557888432 345455544 221 1111111
Q ss_pred --------CCCCCCCCccc--------ccccC------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy2293 381 --------TSPDNFLATDE--------SDVMI------KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTN 438 (832)
Q Consensus 381 --------~s~~~~~~~~~--------~~~~~------~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~ 438 (832)
..|....++++ ...++ ....||...+.||-+||+.|++.|..+.+.|+.||+.
T Consensus 155 ~~~~diydcvp~E~~gdeiYedimk~e~~sm~~~~l~~te~dkRncClrEi~~TE~kY~~tL~sI~k~f~~PLk~----- 229 (865)
T KOG2996|consen 155 EDEIDIYDCVPEEDEGDEIYEDIMKNEKPSMPENDLKMTETDKRNCCLREIQQTEEKYTQTLESIEKTFMEPLKR----- 229 (865)
T ss_pred ccccchhccCccccccchHHHHHHhcCCCCCChhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 11222222222 11111 3358999999999999999999999999999999984
Q ss_pred CCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-h
Q psy2293 439 ECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-S 517 (832)
Q Consensus 439 ~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~ 517 (832)
++++.++..||.||++|..+|..||.+++..+... ..+.+++||+++.++|+ +|..||++.+.|...+..+.+. .
T Consensus 230 --~l~~ad~~ivFiNieel~klHt~ll~ei~~sv~v~-~~qtl~qVFikyker~l-iYG~YCS~~e~a~k~ln~llktrE 305 (865)
T KOG2996|consen 230 --FLPPADYNIVFINIEELNKLHTALLAEIEYSVKVA-GGQTLYQVFIKYKERLL-IYGKYCSNVESARKLLNELLKTRE 305 (865)
T ss_pred --cCChhhhheeEecHHHHHHHHHHHHHHhHHHhhCC-CcccHHHHHHHHHHHHh-hhhhhhccchHHHHHHHHHHHHhH
Confidence 69999999999999999999999999999877543 34789999999999996 9999999999999999998887 9
Q ss_pred HHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy2293 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQ 597 (832)
Q Consensus 518 ~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~ 597 (832)
.|+.-+++|.. +...++..|.++|..|+||+.+|+|||++|+|||....++. .|+.|+++|++++..||+.+|
T Consensus 306 dv~~kleEct~------r~nngkF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~ek~-~LkeAleaM~Dla~yiNEvkR 378 (865)
T KOG2996|consen 306 DVSRKLEECTA------RANNGKFTLRDLLVVPMQRVLKYHLLLKELVKHTDEASEKR-NLKEALEAMEDLAQYINEVKR 378 (865)
T ss_pred HHHHHHHHHHh------hhcCCceeeceeeeeeHHHHHHHHHHHHHHHHhcccCChhh-hHHHHHHHHHHHHHHHhHhhc
Confidence 99999999998 66778999999999999999999999999999999877554 999999999999999999999
Q ss_pred HHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCC
Q psy2293 598 RQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKY 664 (832)
Q Consensus 598 ~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~ 664 (832)
..|....+.+++..|++...+|..-||.-+ .|++...+ -..+++++||+|||+.++|+||++..+
T Consensus 379 D~etlr~I~efq~SIenL~~pl~~~GRpki-DGElki~s-~~~~tkqdRyiFLfDkvviVCKrkG~s 443 (865)
T KOG2996|consen 379 DNETLRVIDEFQLSIENLSQPLHDFGRPKI-DGELKITS-TQAHTKQDRYIFLFDKVVIVCKRKGDS 443 (865)
T ss_pred chHHHHHHHHHHHhHHhhcchHHHhCCCCc-CceEEEee-hhcCCccceEEeEecceEEEeeccCcc
Confidence 999999999999999998777777787755 78887655 234668899999999999999998655
No 7
>KOG3521|consensus
Probab=100.00 E-value=4e-34 Score=310.89 Aligned_cols=330 Identities=20% Similarity=0.287 Sum_probs=267.7
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHH-HHHHH
Q psy2293 392 SDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLL-KDLKY 470 (832)
Q Consensus 392 ~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl-~~L~~ 470 (832)
-+.++.++.|.|++||||++||-.|++.|..+.+.|...|.+.. ..++|-.-+-..+|+|+..|.++|..|. .-|.-
T Consensus 168 heslS~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQ--e~GlL~dVeaerlFsNv~~l~~~n~slW~~~l~P 245 (846)
T KOG3521|consen 168 HESLSDKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQ--ECGLLKDVEAERLFSNVPTLFNVNRSLWLQVLEP 245 (846)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999988887652 3477888888999999999999999974 44444
Q ss_pred HHhcC---CC---CCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCCh
Q psy2293 471 LEQNY---SD---SVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTL 543 (832)
Q Consensus 471 ~~~~~---~~---~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L 543 (832)
.+.+. .. ...+-.-|+.+...| +.|..||..+..++..++.+.++ +.|++|+.+||+ ++.|.++.|
T Consensus 246 ~laksr~TgepLd~~~lq~GFl~f~s~f-~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ek------qk~c~RqkL 318 (846)
T KOG3521|consen 246 ILAKSRETGEPLDPNYLQNGFLDFGSWF-RPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEK------QKNCDRQKL 318 (846)
T ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHh------hhhhhhHHH
Confidence 44322 11 223556688888877 89999999999999999998877 999999999999 999999999
Q ss_pred hHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCC------
Q psy2293 544 PDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPP------ 617 (832)
Q Consensus 544 ~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~------ 617 (832)
.+.|++|+|||+||+|||+.++|+|++.. +.+.+...+..++.++.++|...+..+.+++|..+..+|+++..
T Consensus 319 ~D~l~kPmQRLTKY~LLLkAVlK~t~d~~-e~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rIe~ydvVd~~sd 397 (846)
T KOG3521|consen 319 IDTLSKPMQRLTKYPLLLKAVLKVTTDER-EREAISAMIDSVESFTAHVNKELRQRQERERLAAVMRRIEGYDVVDQDSD 397 (846)
T ss_pred HHHhhhHHHHhhhhHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccCCcHH
Confidence 99999999999999999999999998654 78999999999999999999999999999999999999987631
Q ss_pred -------------cccc--------CCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcc
Q psy2293 618 -------------QLIN--------SHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKM 676 (832)
Q Consensus 618 -------------~L~~--------~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~ 676 (832)
+|.. ..|.|+.+|++....+. +.+-++|||||+|+||+||+..+.....|
T Consensus 398 evdknLK~~~~~~Dl~apm~g~~~~htRqLlleGdlrmKegk--~sK~DVhcfLfTDllLVcK~v~k~~drlK------- 468 (846)
T KOG3521|consen 398 EVDKNLKLFLNLLDLTAPMHGRKPEHTRQLLLEGDLRMKEGK--GSKADVHCFLFTDLLLVCKKVQKKADRLK------- 468 (846)
T ss_pred HHHHHhhhhhhhhccccCCCCCChhhhhhhhhccceecccCC--CcccceeeeeehhHHHHhHHHhhhcccce-------
Confidence 1111 13999999999775532 34568999999999999997654311110
Q ss_pred cccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHH
Q psy2293 677 SLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELC 756 (832)
Q Consensus 677 ~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~ 756 (832)
..+..+-+..+ ++..+.|. |.|.+++.+....-...|+++|+..+ +..+|++.|.
T Consensus 469 -----------------VIRpPll~dkl-v~q~~~dp------nsf~lVhLtEFh~a~~ayt~hcs~p~-d~~~W~D~l~ 523 (846)
T KOG3521|consen 469 -----------------VIRPPLLMDKL-VCQYLRDP------NSFLLVHLTEFHTAQAAYTMHCSGPE-DTLRWTDMLK 523 (846)
T ss_pred -----------------eeccchhhcce-eeeecCCC------CceEEEeechhhhhhhhheeecCChh-hHHHHHHHHH
Confidence 01111223344 45566665 99999999988878889999997655 9999999999
Q ss_pred HHHHHhhcc
Q psy2293 757 RQASAVYCI 765 (832)
Q Consensus 757 ~~i~~~~~~ 765 (832)
+|.+.+++-
T Consensus 524 ~Aq~~~QkL 532 (846)
T KOG3521|consen 524 MAQDELQKL 532 (846)
T ss_pred HHHHHHHHH
Confidence 999887654
No 8
>KOG3518|consensus
Probab=100.00 E-value=5.1e-34 Score=287.72 Aligned_cols=311 Identities=20% Similarity=0.261 Sum_probs=250.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2293 399 NSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDS 478 (832)
Q Consensus 399 ~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~ 478 (832)
.-...++..||++||+.||++|+.+++.|+.-+.+.. .+--+.-+.+..+||||++|+.++..++++|+.+- .+.
T Consensus 119 l~~ldriaieildtertyvedl~aiie~yld~i~edq--eklkl~ldaisalfg~ie~ifafnkel~n~ldaad---ld~ 193 (521)
T KOG3518|consen 119 LLHLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQ--EKLKLGLDAISALFGCIEDIFAFNKELLNDLDAAD---LDC 193 (521)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH--hhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhcc---cch
Confidence 4566789999999999999999999999999987532 22336678999999999999999999999999852 234
Q ss_pred CchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHH
Q psy2293 479 VSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSIS 558 (832)
Q Consensus 479 ~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~ 558 (832)
..|+.||......| ..|..||.||++.+.+|..|++++-.+.++++.+.. ....++|.+||++|||||.+|.
T Consensus 194 v~ia~cfve~s~ef-e~yieyctny~rmmatl~~~~q~~ilaka~qerq~a-------l~hsl~l~ayllkpvqrilkyh 265 (521)
T KOG3518|consen 194 VAIAECFVEKSEEF-EDYIEYCTNYHRMMATLTECMQNKILAKAFQERQEA-------LKHSLPLGAYLLKPVQRILKYH 265 (521)
T ss_pred HHHHHHHHhcchhH-HHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-------HhcccchhHHHHHHHHHHHHHH
Confidence 67999999999999 799999999999999999999999999999888773 3357999999999999999999
Q ss_pred HHHHHHHhhCCCC-C-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCC-----ccccCCCeEEeeee
Q psy2293 559 LLLNDILKNTSKS-S-TDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPP-----QLINSHRSFVLKCD 631 (832)
Q Consensus 559 LLL~~llk~t~~~-~-~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~-----~L~~~~R~li~~g~ 631 (832)
|+|.+|.+|.+.+ | +++..+..|++.|...+.+||+.+++.|...++-+|+..+..|.. +-++.-..|+-+|.
T Consensus 266 lfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqkwkadeiqi~dlsaygdllleat 345 (521)
T KOG3518|consen 266 LFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQKWKADEIQIPDLSAYGDLLLEAT 345 (521)
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccCCchhhhHHHHHHHH
Confidence 9999999999987 4 457889999999999999999999999999999999999987744 22344455665665
Q ss_pred EEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeec
Q psy2293 632 VIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVE 711 (832)
Q Consensus 632 l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~ 711 (832)
+.. .+....|.+|||+.+|+|+|++... |.++..+...++-.+.-|-
T Consensus 346 fr~-----agak~~rllflfdellli~kkr~an----------------------------f~~k~~ilc~nlmlne~ic 392 (521)
T KOG3518|consen 346 FRI-----AGAKNERLLFLFDELLLITKKRDAN----------------------------FTCKAHILCGNLMLNEVIC 392 (521)
T ss_pred HHH-----hcccccchHHHHHhHHhheeecCCc----------------------------eeeehhhhccchhhheecc
Confidence 543 2446689999999999999988654 3333333333332222231
Q ss_pred CCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 712 DEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 712 d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
. ...-.|.+.+-.+ ....|+|.|.+.+ +|..|+..|.+.+-...
T Consensus 393 p----eeplsfqv~~fdn---pkaq~~fma~sme-~kr~wm~elkrlildh~ 436 (521)
T KOG3518|consen 393 P----EEPLSFQVFHFDN---PKAQHTFMAKSME-DKRLWMLELKRLILDHH 436 (521)
T ss_pred C----CCCceeEEEecCC---cchhhhhhhhhhH-HHHHHHHHHHHHHHhhh
Confidence 1 2247888877544 3567899987666 99999999999886543
No 9
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-34 Score=315.46 Aligned_cols=401 Identities=17% Similarity=0.226 Sum_probs=305.9
Q ss_pred CchhhhhhhhhhhcccCCCCCCCCCCCcccccCCCCccCCCCccccCCCCCCCCCcccccccCCCchhHHHHHHHHHHHH
Q psy2293 334 PDRAAKRKRLMEVVEEPHSSPRKSRKKRTSDIDGTPRYSCGSLLDYTTSPDNFLATDESDVMIKGNSPRHQVFKELCQTE 413 (832)
Q Consensus 334 p~~~~~~~rLsq~~~~~~~~p~~~~~~r~S~~~~~~~~s~~s~~d~s~s~~~~~~~~~~~~~~~~~~kRq~vi~ELl~TE 413 (832)
|.+-.|+|||.|+.++. ..+.+ +.+|.+. +.-..+.+.-..|..+++.++.+.+++++.|||++|.|.+.||
T Consensus 425 cysiscpRRLeQqarl~-lKl~~-~l~~~~S------~a~Dk~deek~~w~~sVpk~v~~sl~~qe~kRqe~I~evi~te 496 (1175)
T COG5422 425 CYSISCPRRLEQQARLH-LKLMG-GLKRNSS------LALDKFDEEKNLWTLSVPKEVWESLPKQEIKRQEAIYEVIYTE 496 (1175)
T ss_pred eEEEecchhhHHHHHHH-Hhhcc-CCCCccc------ccccchhhhhhhhhhcCCHHHHhhCcHHHHhhhhhhhheeeec
Confidence 33345999999998776 55553 4444431 1122234455678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCH----HHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHhH
Q psy2293 414 SNYVNVLRVLIEHFKNPLEEKLNTNECILNQ----AEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHC 489 (832)
Q Consensus 414 ~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~----~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~Ig~vfl~~~ 489 (832)
++||++|..+.+.|++||.+. .++++ +.++.+|.|+.+|+.++.+|+++|..++.-.+-...|||+|++|+
T Consensus 497 r~FVk~le~lRD~~~K~L~~s-----n~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~rQ~lsPiv~~I~DifL~~v 571 (1175)
T COG5422 497 RDFVKDLEYLRDTWIKPLEES-----NIIPENARRNFIKHVFANINEIYAVNSKLLKALTNRQCLSPIVNGIADIFLDYV 571 (1175)
T ss_pred cchhhhhHHHHHHHHHHHHHc-----CcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcccccccccchHHHHHhhh
Confidence 999999999999999999987 44444 578999999999999999999999998877777899999999999
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhhC
Q psy2293 490 TAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNT 568 (832)
Q Consensus 490 ~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t 568 (832)
|.| +.+..|.++.+.|+..++..+.. |.|..|..+.+. ....+++.++.||.+|+.|++||+||++++++.|
T Consensus 572 P~F-epfiky~a~~~yaky~~erekS~np~fa~Fd~~v~r------l~~s~k~~ld~yLtk~~tr~~Ry~lL~e~vlkft 644 (1175)
T COG5422 572 PKF-EPFIKYGASQPYAKYEFEREKSVNPNFARFDHEVER------LDESRKLELDGYLTKPTTRLARYPLLLEEVLKFT 644 (1175)
T ss_pred hhh-hHHHHhhcccchhheeeeeccccCcchhhhhHHHHh------cchhhhhcccceecCCcccchhhHHHHhhhcccC
Confidence 977 89999999999999999987776 999999999997 6778899999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCC----CccccCCCeEEeeeeEEEeccccc-C-C
Q psy2293 569 SKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP----PQLINSHRSFVLKCDVIELSNMLS-H-R 642 (832)
Q Consensus 569 ~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~----~~L~~~~R~li~~g~l~~~~~~~~-~-k 642 (832)
+++.||+++|.++++.++++++++|-+.+.+|+...++.+.++|-..| ..+....|+++++|.+........ + -
T Consensus 645 d~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~fk~e~~~lgl~D~~rkii~kgvlk~ka~~~td~s~ 724 (1175)
T COG5422 645 DPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLLFKPEYVNLGLNDEYRKIIFKGVLKRKAKSKTDGSL 724 (1175)
T ss_pred CCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhccCchhhcccccchhHHHHHhhhhhhhhhccCCccc
Confidence 999999999999999999999999999999999999999988887654 567888999999998866442211 1 1
Q ss_pred ccEEEEEEeCCeEEEEEecCC----CcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCccc
Q psy2293 643 GDCITLFLFTDVVEVCKKRSK----YVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDND 718 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~----~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~ 718 (832)
..++++||++++|++||.+.- ...++.+|.....++-.+- .+.+....|--.. | +...+...-.+ .+.
T Consensus 725 ~~di~f~llDn~ll~~Kak~vnkw~~hkvfqrpipl~ll~i~~~--eDsp~~~~y~~~~--~--s~~~l~pa~nt--~~P 796 (1175)
T COG5422 725 RGDIQFFLLDNMLLFCKAKAVNKWRQHKVFQRPIPLELLFISPD--EDSPDRAEYLKPA--P--SADVLDPAYNT--KPP 796 (1175)
T ss_pred ccceeeeehhhHHHHhcccchhhhhhceeecCCCcchhhccccc--cCCchhhhccCCC--C--cccccChhhhc--CCc
Confidence 458999999999999998753 1224555554322221111 1111121222111 1 11011111122 233
Q ss_pred CceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 719 RQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 719 ~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
.+++.+....... ....++.|+. ..-++.|++.+...++....|
T Consensus 797 ~~a~~F~~~~~~~--ry~itlYa~~-~~g~d~~lE~i~nqQ~~l~~~ 840 (1175)
T COG5422 797 KNAYGFELYGNGQ--RYQITLYAET-HAGRDTWLEHIKNQQDILRTR 840 (1175)
T ss_pred cccceeeeecccc--cccccccccc-cchHHHHHHhhhhhhhhhhhh
Confidence 4555555544422 2456666655 449999999999987765544
No 10
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.97 E-value=9.1e-31 Score=262.49 Aligned_cols=179 Identities=38% Similarity=0.629 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC-CCCchHH
Q psy2293 405 VFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYS-DSVSIGE 483 (832)
Q Consensus 405 vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~-~~~~Ig~ 483 (832)
|++||++||++||++|+.+.+.|+.|+.... ++++..++..||+|+++|+.+|+.|+.+|+++..+|. ....||+
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~----~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~ 76 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKEL----KLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDDSPERIGD 76 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 5899999999999999999999999999862 2789999999999999999999999999999999884 6789999
Q ss_pred HHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHHHHHH
Q psy2293 484 VFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLND 563 (832)
Q Consensus 484 vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~LLL~~ 563 (832)
+|+++.+ ++++|..||.+++.+...+..+.+++.|..|++.++. .+.+++++|.+||++||||++||++||++
T Consensus 77 ~f~~~~~-~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~------~~~~~~~~l~~~L~~PvqRl~rY~lll~~ 149 (180)
T smart00325 77 VFLKLEE-FFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIES------SPQCRRLTLESLLLKPVQRLTKYPLLLKE 149 (180)
T ss_pred HHHHhhH-HHHHHHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhC------ChhhccCCHHHHHhHHHHHhccHHHHHHH
Confidence 9999955 5599999999999999999997666999999999999 78888899999999999999999999999
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy2293 564 ILKNTSKSSTDHQKLSEALDGIRTVMTFLNE 594 (832)
Q Consensus 564 llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe 594 (832)
|+|+|+++|+|+..|+.|++.++.++.+||+
T Consensus 150 l~k~t~~~~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 150 LLKHTPEDHEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999985
No 11
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.97 E-value=2e-30 Score=260.23 Aligned_cols=178 Identities=36% Similarity=0.604 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-CCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC-CCC
Q psy2293 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECI-LNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYS-DSV 479 (832)
Q Consensus 402 Rq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~-l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~-~~~ 479 (832)
|+++++||++||++||++|+.+.+.|..|+... .. +++.++..||+|+++|+.+|+.|+.+|+.+..+|. ...
T Consensus 1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~~-----~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~ 75 (181)
T cd00160 1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDKE-----LLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEWDKSGP 75 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 789999999999999999999999999999886 23 88999999999999999999999999999999887 678
Q ss_pred chHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHH
Q psy2293 480 SIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSIS 558 (832)
Q Consensus 480 ~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~ 558 (832)
.||++|+++.+ ++++|..||.+++.+...+..+++. +.|.+|++.++. .+.+++|.+||++||||++||+
T Consensus 76 ~i~~~f~~~~~-~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~--------~~~~~~l~~~L~~PvQRl~rY~ 146 (181)
T cd00160 76 RIGDVFLKLAP-FFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES--------ECGRLKLESLLLKPVQRLTKYP 146 (181)
T ss_pred hHHHHHHHhhh-HHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH--------hcccCCHHHHhhhhHHHhchHH
Confidence 89999999999 6699999999999999999999865 999999998874 3578999999999999999999
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q psy2293 559 LLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLN 593 (832)
Q Consensus 559 LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iN 593 (832)
+||++|+|+|+++|+|+..|+.|++.++.++.+||
T Consensus 147 lLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 147 LLLKELLKHTPDGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999987
No 12
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.96 E-value=9.8e-28 Score=240.10 Aligned_cols=179 Identities=37% Similarity=0.620 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q psy2293 405 VFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEV 484 (832)
Q Consensus 405 vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~Ig~v 484 (832)
|++||++||++|+++|+.+.+.|..++... .+.++..++..+|+|+++|+++|+.|+..|+.++.+|.....||++
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~----~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~~~~~~~~i~~i 76 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKPLRKR----SPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMKEWSNIQSIGDI 76 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH----TTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSSGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHHhhhccchhhhh
Confidence 689999999999999999999999999873 2678899999999999999999999999999998888888999999
Q ss_pred HHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHHHHHH
Q psy2293 485 FVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLND 563 (832)
Q Consensus 485 fl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~LLL~~ 563 (832)
|++ ...+.++|..||.+++.+...+..+.+. ..|..|++.++. .+...++++.++|++|+|||+||+++|++
T Consensus 77 f~~-~~~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~l~~~l~~Piqrl~rY~lll~~ 149 (180)
T PF00621_consen 77 FLK-FEPFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIEN------SPESKRLSLSSLLIKPIQRLPRYPLLLKR 149 (180)
T ss_dssp HHH-HTTGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SHHCTTSTHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhh-ccccccceeccchheechhhhhhHHHhhccccccccccccc------cccccCCCHHHHHHHhhhHHHHHHHHHHH
Confidence 999 5557799999999999999999998887 669999999998 78889999999999999999999999999
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy2293 564 ILKNTSKSSTDHQKLSEALDGIRTVMTFLNE 594 (832)
Q Consensus 564 llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe 594 (832)
|+++|+++|+|+..|++|+..++++..++|+
T Consensus 150 llk~t~~~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 150 LLKNTPPDHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp HHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999996
No 13
>KOG2070|consensus
Probab=99.94 E-value=2.8e-25 Score=234.82 Aligned_cols=311 Identities=17% Similarity=0.264 Sum_probs=252.5
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q psy2293 394 VMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQ 473 (832)
Q Consensus 394 ~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~ 473 (832)
+.......|.-|++.+|+||+.|++.|..+...|+.||... .+|+..++..+.+|+++|+.+|+.++..|+++..
T Consensus 94 t~~~~~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq~s-----~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~~ 168 (661)
T KOG2070|consen 94 TTAINKSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQTS-----EILSSAEYSYLMGNFEEICTFQQDLVQQLEECTK 168 (661)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----cccchHHHHHHhcchHHhHhHHHHHHHHHHHhhc
Confidence 33355678999999999999999999999999999999876 7899999999999999999999999999999987
Q ss_pred cCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHH
Q psy2293 474 NYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQR 553 (832)
Q Consensus 474 ~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQR 553 (832)
......++|.+|+..++.|..+|..||.||+.|...|.+... ....|++...+ ...+-+-|..=|.+|+.|
T Consensus 169 ~~~~q~RVGg~fln~ap~mkt~~~aYcanHP~AV~VL~k~~d--ELek~me~Qga-------sspg~lvLttgLSkPfrr 239 (661)
T KOG2070|consen 169 LPEAQQRVGGCFLNLAPQMKTLYLAYCANHPSAVNVLTKHSD--ELEKFMETQGA-------SSPGILVLTTGLSKPFRR 239 (661)
T ss_pred CchhhhhhhhHHHhhhHHHHHHHHHHHhcCchhhhHHHHhHH--HHHHHHHhcCC-------CCCCeEEEecccchHHHH
Confidence 766778999999999999999999999999999999986544 45566654433 334556777889999999
Q ss_pred HhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEE
Q psy2293 554 LGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVI 633 (832)
Q Consensus 554 i~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~ 633 (832)
+-||+-||++|-+|.+..|||+.+++++...++++...|.+..++.|....+ +...+.++.+.-++.-..+|+-|.+.
T Consensus 240 ldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEleLqi--Lt~~i~~w~g~d~s~lG~iiymg~v~ 317 (661)
T KOG2070|consen 240 LDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQKELELQI--LTEPIRNWEGDDISTLGNIIYMGQVL 317 (661)
T ss_pred HHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hcccccccccchhhhccceEeeeehh
Confidence 9999999999999999999999999999999999999999988777665433 44566777666555666778888775
Q ss_pred EecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCC
Q psy2293 634 ELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDE 713 (832)
Q Consensus 634 ~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~ 713 (832)
.-.. +...++||+.||..+|++.....+..+ |.+-..+|++.+ .|..++|+
T Consensus 318 Vqy~--~ad~~dRy~~LF~~~llflsvs~rMs~--------------------------fIyegKlp~tG~-iV~klEdt 368 (661)
T KOG2070|consen 318 VQYA--GADEKDRYLLLFPNVLLFLSVSPRMSG--------------------------FIYEGKLPTTGM-IVTKLEDT 368 (661)
T ss_pred hhhc--CcchhhheeeeccceeeeeEeccccch--------------------------hhhcccccccee-EEeehhhh
Confidence 5332 122459999999999999987655421 344456899998 78888888
Q ss_pred CCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 714 AHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 714 ~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
+...++|.|....- ......| ..+.+-+.|++.+..
T Consensus 369 --e~~~nafeis~~ti-----~rIv~~c-~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 369 --ENHRNAFEISGSTI-----ERIVVSC-NNQQDLQEWVEHLNK 404 (661)
T ss_pred --hcccccccccccch-----hheeecc-CChHHHHHHHHHhhh
Confidence 88889999865432 1233344 456699999999986
No 14
>KOG3522|consensus
Probab=99.94 E-value=3.2e-26 Score=257.15 Aligned_cols=265 Identities=25% Similarity=0.389 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCch
Q psy2293 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSI 481 (832)
Q Consensus 402 Rq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~I 481 (832)
|..++.+|+++|++||..|+.+++.|++||.+ ...++.+..+..||.||++|+++|+.||.+|+.+.+.|..++.+
T Consensus 1 r~~v~~~l~~~Eq~yv~sL~t~vd~y~qpL~~----~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~~qq~v 76 (925)
T KOG3522|consen 1 RRYVLLQLIDREQSYVESLHTGVDRYVQPLKE----RKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWDEQQKV 76 (925)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhccccc----cccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 56789999999999999999999999999987 34677888999999999999999999999999999999999999
Q ss_pred HHHHHHhHH--HHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHH
Q psy2293 482 GEVFVKHCT--AFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISL 559 (832)
Q Consensus 482 g~vfl~~~~--~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~L 559 (832)
|+.|..... ....+|..||+|+..|...++... .|.|.+|++ ++++| |+|||.|
T Consensus 77 ga~~v~~fSk~~v~~~Y~~y~nn~~~A~~~l~~~~-rpaf~~Fl~---------------------l~~kP--r~P~y~l 132 (925)
T KOG3522|consen 77 GASFVYSFSKTAVLAAYSKYVNNFKRAKCALRNKK-RPAFSKFLE---------------------LMIKP--RFPRYEL 132 (925)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhchhHHHHHHHHhc-chHHHHHHH---------------------HHhcc--CCchHHH
Confidence 999998643 457899999999999999998766 799999976 67789 9999999
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCC---CCccccCCCeEEeeeeEEEec
Q psy2293 560 LLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENC---PPQLINSHRSFVLKCDVIELS 636 (832)
Q Consensus 560 LL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~---~~~L~~~~R~li~~g~l~~~~ 636 (832)
||+ |+||||.+|||+..|+.|+..+..++.++|+.+|..+...++.++.+.|+.. ..+|..+.|+|+.+..+....
T Consensus 133 ll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~dl~se~v 211 (925)
T KOG3522|consen 133 LLQ-MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQDLVSETV 211 (925)
T ss_pred HHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHhhhhh
Confidence 999 9999999999999999999999999999999999999888888777777642 345777888888877665543
Q ss_pred ccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEe
Q psy2293 637 NMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVY 708 (832)
Q Consensus 637 ~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~ 708 (832)
..++++.+-.|+|+|.++.+.-+... +.++.|.+.+.+.. .+ +|+..+.++|.....+.
T Consensus 212 --y~~rk~d~~~~~~rd~i~~~~Lk~~s-g~~r~~~t~as~vd---------t~-ky~~lw~~~L~~~~vvk 270 (925)
T KOG3522|consen 212 --YTGRKKDRKAFLFRDLIVNTDLKRAS-GSSRKPSTAASVVD---------TA-KYKLLWKDPLVFADVVK 270 (925)
T ss_pred --hccccchhhheeeeeeeeeeeeeeee-ceecCCcccccccc---------cc-ceeeeeccccchhheee
Confidence 34678899999999999999766544 33444543222221 13 69999999998875444
No 15
>KOG0689|consensus
Probab=99.91 E-value=6.6e-25 Score=239.78 Aligned_cols=305 Identities=24% Similarity=0.306 Sum_probs=239.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHhcC
Q psy2293 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDL-LKDLKYLEQNY 475 (832)
Q Consensus 397 ~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~f-l~~L~~~~~~~ 475 (832)
+...++..++.|++.||.+||++|....+.|+..+... ..+.++-.+ -+.||+|+.+|+++|..+ +.+++.+...
T Consensus 58 ~~~~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~-~lp~~lrg~--~~iifgni~~i~~~h~~~fl~e~e~~~r~- 133 (448)
T KOG0689|consen 58 KALKKRSFVLDELIATEVDYVKDLKSVVENYIELLDAE-DLPEDLRGK--DKIIFGNIKEIYEFHKKEFLPELERCERD- 133 (448)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhcccccccccccccccc-CCChhccCC--ceeeechHHHHHHhhcccCcchHHHhhhC-
Confidence 55678899999999999999999999999999999876 333344333 569999999999999995 8888886543
Q ss_pred CCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHh
Q psy2293 476 SDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLG 555 (832)
Q Consensus 476 ~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~ 555 (832)
....|.+|++|..+|.-.|..||.|.+.....+.+ -.+..|++..+. +...++++.+||++||||++
T Consensus 134 --~~~~~~~f~kh~~k~~~~y~~y~q~kp~s~~~~~~----~~~~~~f~~~~~-------~~~~~l~l~~~l~kPiQR~~ 200 (448)
T KOG0689|consen 134 --PLELGQAFAKHERKNSVLYVTYCQNKPKSDYLLAE----YDNEAFFQEYQT-------QLGHKLDLSSYLIKPVQRIM 200 (448)
T ss_pred --HHHHHHHHHHHHHHhhhhhhhhhcCCCCCccccee----cccchhhHHHhh-------hcccccccchhhhhhhHHHH
Confidence 57899999999999955999999999987333322 234677777776 34568999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEEEe
Q psy2293 556 SISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIEL 635 (832)
Q Consensus 556 rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~~~ 635 (832)
+|++||+++++.+.....|+..|.+|.+.++.+.+++|+... ...+.|+..++... ..+++++++...
T Consensus 201 kYqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~~-----------~~~l~g~e~~l~~q-G~l~~qd~f~v~ 268 (448)
T KOG0689|consen 201 KYQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMMQ-----------VGRLQGFEGDLKAQ-GKLRRQDEFDVS 268 (448)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhhc-----------cchhcccccchHhh-ccccccCcccee
Confidence 999999999999999999999999999999999998887532 24566777776654 456777777654
Q ss_pred cccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCC
Q psy2293 636 SNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAH 715 (832)
Q Consensus 636 ~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~ 715 (832)
.. ..++.+.+.+|||.-++||+|.+....+ ...|.++..++++++..-....
T Consensus 269 ~~-~~~~~~~R~vflFe~~v~Fse~~~~~~~-----------------------~~~y~yk~~ik~~~lgle~n~~---- 320 (448)
T KOG0689|consen 269 HG-RAGKKKDRRVFLFERLVVFSKLRKPESG-----------------------TETYVYKQHIKVNDLGLEENND---- 320 (448)
T ss_pred ec-cccccchhhhhhhhhhhhhhhhhcCCCC-----------------------CcceeeecchhhhheeeeccCC----
Confidence 42 3345679999999999999998764211 2237777888888873333332
Q ss_pred cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 716 DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 716 ~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
+....|.+|++.... ...|.++|.+ ..+|+.|++++.......
T Consensus 321 -~s~~rF~i~~r~~~~--~~~~vlqa~s-~~~k~~W~~~i~~~l~~Q 363 (448)
T KOG0689|consen 321 -NSASRFEIWFRGRKK--REAYVLQAGS-KEIKYAWTRAISSLLWQQ 363 (448)
T ss_pred -CCCcchhhhhhcccc--cceeEEeeCC-HHHHHHHHHHHHHHHHHH
Confidence 345889999987732 3689999865 559999999999877655
No 16
>KOG4240|consensus
Probab=99.90 E-value=2.1e-24 Score=250.88 Aligned_cols=298 Identities=22% Similarity=0.353 Sum_probs=227.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHhcCCC
Q psy2293 400 SPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNT-NECILNQAEMKIIFGDLCPIFDTHKD-LLKDLKYLEQNYSD 477 (832)
Q Consensus 400 ~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~-~~~~l~~~~~~~IF~ni~~I~~~h~~-fl~~L~~~~~~~~~ 477 (832)
+++..++.|+|+||+.||++|....+.|...+...... ..+++. -...||+|+++|+.+|.. ||..|+..-..
T Consensus 631 rl~~~~m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~Ln--k~~~ifgnmeeiy~fhn~~~L~eLe~y~~~--- 705 (1025)
T KOG4240|consen 631 RLKRHVMRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLLN--KKEIIFGNMEEIYEFHNDIFLSELEKYEQL--- 705 (1025)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccccccc--hHHHHHhhHHHHHHHHhhHHHHHhhhhccC---
Confidence 34578999999999999999999999999988776332 345666 455999999999999997 78888886544
Q ss_pred CCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhH
Q psy2293 478 SVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSI 557 (832)
Q Consensus 478 ~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY 557 (832)
...||++|+.+.+.| .+|..||.|.+.+..++.....- .|+.++++ ... -.+++.+||++|||||++|
T Consensus 706 pE~Vg~~fle~~d~f-qly~~Yc~nke~S~ql~~~~a~~----~ff~e~qr------~~~-l~l~~~S~l~kpvqritkY 773 (1025)
T KOG4240|consen 706 PEDVGHCFLERADDF-QLYAKYCQNKELSNQLIRLHAGC----SFFQEIQR------RHG-LELSISSYLIKPVQRITKY 773 (1025)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhCCcchHHHHHhcccc----cccHHHHH------Hhh-hhhhhHHHHhHHHHHHHHH
Confidence 478999999999999 89999999999999988877653 34555565 211 2359999999999999999
Q ss_pred HHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEEEec-
Q psy2293 558 SLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELS- 636 (832)
Q Consensus 558 ~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~~~~- 636 (832)
.|||+++++.+.+ -...|++|++.|-.+.+.+|+.+.. ..++|+..+|-. -..+|.+|.+..+.
T Consensus 774 qlllkell~~c~e---~~~~lkd~l~~ml~v~k~~nd~mh~-----------~~~~~~d~nl~~-lg~~~~q~~f~vw~~ 838 (1025)
T KOG4240|consen 774 QLLLKELLKCCCE---GTGDLKDALEVMLSVPKKVNDSMHL-----------IALEGYDGNLDE-LGKLIMQDSFSVWKP 838 (1025)
T ss_pred HHHHHHHHHhhhh---chHHHHHHHHHHHhhhhhcccccCH-----------HHHhhhhhhHHH-HHHHHhhccceeecH
Confidence 9999999996554 4568899999999999999997542 234455444443 33556666666554
Q ss_pred ccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCc
Q psy2293 637 NMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHD 716 (832)
Q Consensus 637 ~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~ 716 (832)
..+..++.+||+|||.--+|+||+...+.. +.| +.++++ ++++.+.++..+ +
T Consensus 839 k~l~rk~~erhlfl~ei~ivf~K~~~~s~~--~~~-------------------~~~~~~--l~~~e~gite~v-----~ 890 (1025)
T KOG4240|consen 839 KALARKGMERHLFLFEISIVFCKRIEESSE--RIK-------------------YVSKKK--LPMSEVGITEHV-----E 890 (1025)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhccC--CCc-------------------chhhcc--CCHHhhcchhhc-----c
Confidence 233457899999999999999998765422 111 113332 777777433333 5
Q ss_pred ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 717 NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 717 ~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
++.+.|.||.... +..|.++|++-+ .|..|++.|++.+.+-
T Consensus 891 Gd~~kf~~~~g~~----~~~~~~~a~~~~-~K~~W~~~ir~~~~~~ 931 (1025)
T KOG4240|consen 891 GDPCKFELWVGRT----ESVIDLKASNHE-TKQKWVKEIREVLQER 931 (1025)
T ss_pred cCceEEEEeccCC----CcceeeecCCcc-hhhhhccchHHHHHHH
Confidence 6679999999765 448999987766 9999999999977654
No 17
>KOG3531|consensus
Probab=99.88 E-value=1.2e-23 Score=234.94 Aligned_cols=328 Identities=18% Similarity=0.232 Sum_probs=266.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC---
Q psy2293 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDS--- 478 (832)
Q Consensus 402 Rq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~--- 478 (832)
-..+.+|+..||+.|.++|..+...|...+-+. ..++......+|.|+++|.++|+.||+++++++..|...
T Consensus 534 vyF~~kel~~tERty~kdleV~tt~Frst~v~~-----dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria~weGrsna 608 (1036)
T KOG3531|consen 534 VYFIVKELSDTERTYLKDLEVITTWFRSTVVKE-----DAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIALWEGRSNA 608 (1036)
T ss_pred ceeeecccccccccchhccceeeeeecceeecC-----cccccchhhhhccCCChhhHHHHHHHHHHHHHHHhccCCCCC
Confidence 345889999999999999999998887766543 566777888999999999999999999999999999642
Q ss_pred -----CchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHH
Q psy2293 479 -----VSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQ 552 (832)
Q Consensus 479 -----~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQ 552 (832)
..|||+.++++..+ ++|..|...+..+...+..-.+- .+|.++.++.+. ...|. +++..||.+|++
T Consensus 609 ni~~~~~igDVmLk~m~~l-~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefel------qkvcy-LP~~~fllkpL~ 680 (1036)
T KOG3531|consen 609 NIVIEQRIGDVMLKNMRSL-KITTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFEL------QKVCY-LPLNTFLLKPLS 680 (1036)
T ss_pred ceeeeeccCCcchhhhhcc-chhhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHh------hhccc-cccchhhhcccc
Confidence 45999999999988 89999999999999999887766 999999999998 66665 899999999999
Q ss_pred HHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeE
Q psy2293 553 RLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDV 632 (832)
Q Consensus 553 Ri~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l 632 (832)
|+..|.+.|+.|..+..++|.||.+...+.+.+-...+.+....-+.| +|.+|++.+.+. .+|+.++|+|++.|.+
T Consensus 681 rllhyq~~LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e---~l~Elkrdl~s~-e~LV~p~rE~ir~g~l 756 (1036)
T KOG3531|consen 681 RLLHYQLALERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE---KLRELKRDLASI-ENLVHPGREFIRSGCL 756 (1036)
T ss_pred HHHHHHHHHHHhhcccCCCccchHHHhhcccccccccccccccchhHH---HHHHHHHhhhcc-ccccCcchhhhhcCCc
Confidence 999999999999999999999999999999988888888777766666 788999888865 5699999999999999
Q ss_pred EEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecC
Q psy2293 633 IELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVED 712 (832)
Q Consensus 633 ~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d 712 (832)
.+.++ +.-+++.+|||+|+||++.+.... .+.|+....+|+. + .+.+.++
T Consensus 757 lK~sk---kgLqqrmfFLfsdillytsk~~~~-------------------------~~~fri~g~lP~~-l-~~en~en 806 (1036)
T KOG3531|consen 757 LKLSK---KGLQQRMFFLFSDILLYTSKGPDV-------------------------QKCFRINGDLPLT-L-TMENSEN 806 (1036)
T ss_pred hhhcc---ccchhhhhhhhhhhheeccCCCCh-------------------------hheeEeccCCceE-e-eeecccc
Confidence 88762 335789999999999999754322 3348888899988 5 5666666
Q ss_pred CCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc--Cccch----hhcccccCCCCcccc
Q psy2293 713 EAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI--NFDKF----LEDISLANASSFNIE 785 (832)
Q Consensus 713 ~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~--d~~~~----~~~~~~~~~~el~~~ 785 (832)
. ....+.|.|... .......|. +..+.+.|..++..++....+. ..|.+ ++......|++-.++
T Consensus 807 ~--~s~p~~~ti~~~------qk~i~vsas-t~~~sk~~~~~r~~~i~~~~k~~~~~pg~~~~~l~t~~p~sp~~~sle 876 (1036)
T KOG3531|consen 807 E--WSVPHCFTISGA------QKQIYVSAS-TRRESKKWEFDRRKAIDLAPKKSSPAPGLFSAQLHTIPPTSPDEDSLE 876 (1036)
T ss_pred c--ccCCceEEEecc------ceEEEEecc-chhhhhhhhhccchhhhhccccCCCCCCccccccccCCCCCCchhhhc
Confidence 5 567788887532 335555654 4559999999999999665444 33333 443444455555444
No 18
>KOG3519|consensus
Probab=99.87 E-value=8.2e-22 Score=235.22 Aligned_cols=256 Identities=27% Similarity=0.465 Sum_probs=214.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC-
Q psy2293 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNY- 475 (832)
Q Consensus 397 ~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~- 475 (832)
....+|..+|.|+++||++|+++|+.+...|+.++.+. ...++.+.+..+|+|+++|+.+|..|+..|+......
T Consensus 332 ~~~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~----~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~~~~~ 407 (756)
T KOG3519|consen 332 SLDKKRTKVIKELLDTEKNYVKDLNALCEGYLPPQNKR----ARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQINPEL 407 (756)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhh----hccccHHHHHHHccCHHHHHHHHHHHHHHHHHhcchhh
Confidence 56689999999999999999999999999999996443 2568899999999999999999999999999987533
Q ss_pred --CCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHH
Q psy2293 476 --SDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQR 553 (832)
Q Consensus 476 --~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQR 553 (832)
.....||.+|+.+.+.| .+|..||++++.+...+..+++++.+..|+..|.. .....+.+|.++|++|+||
T Consensus 408 ~~~~~~~ig~~fL~~~~~f-~~ys~yc~~h~~~~~~l~~~~~~~~~~~~l~~~~~------~~~~~~~~L~s~l~~pvqr 480 (756)
T KOG3519|consen 408 IPPSLSEIGPVFLEQLDVF-KIYSEYCNNHPKAQKKLSKLKKKKKVKEFLEACNL------LQQHSNSSLSSFLLKPVQR 480 (756)
T ss_pred cchhHhHHHHHHHHhcccc-eeechhhhccchHHHHHHHHhhhhhhhhhhhhhhh------hhccccCCchhhhccHHHH
Confidence 34678999999999999 68888999999999999999999999999999988 4444458999999999999
Q ss_pred HhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-------ccCCCC-ccccCCCe
Q psy2293 554 LGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQD-------IENCPP-QLINSHRS 625 (832)
Q Consensus 554 i~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~-------i~~~~~-~L~~~~R~ 625 (832)
+++|||+|+++++.|+.+|.||..+..|...++.+...||+.++..|.+....+-... ++.+++ .+......
T Consensus 481 i~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~Ss~ 560 (756)
T KOG3519|consen 481 ICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQSGSNSLELSEGELLLDNSSE 560 (756)
T ss_pred hccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhhccchhhhccCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999995544433322 333322 22335566
Q ss_pred EEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCC
Q psy2293 626 FVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKY 664 (832)
Q Consensus 626 li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~ 664 (832)
++..++...... ..+....++.|||+..+++|+.....
T Consensus 561 l~~~~~~~~~~q-~~~~~~~~~~~l~~~~~~~c~~~~~~ 598 (756)
T KOG3519|consen 561 LLLSGPSLKIRQ-FQSDSQQRQFFLFDNQLVYCKRSSTS 598 (756)
T ss_pred eeeccchhhhhh-hhcchhhhhheecccceeEeeccccc
Confidence 666666654321 22446788999999999999976544
No 19
>KOG1929|consensus
Probab=99.87 E-value=2.1e-22 Score=233.82 Aligned_cols=188 Identities=20% Similarity=0.254 Sum_probs=166.4
Q ss_pred CccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHc
Q psy2293 142 PLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 142 P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~ 221 (832)
++|...|.||++|+||+++ ..++.|..++.+|||.+..+++..|||||+++..+.||.+|...+++||+++||...|+.
T Consensus 4 ~~~~~~~~~v~~~~t~i~p-~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~s~~~~~a~~~~~~~~~~~wi~~~~d~ 82 (811)
T KOG1929|consen 4 TLYSKPMSGVTFSPTGINP-IKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVTSSKYAAAHRFDIKVLDSSWIDYIYDL 82 (811)
T ss_pred cccCcccCCceeccCcCCH-HHHHHHHHHHHhcCceeeeccCCcCceeecccccccchhhhhcCCCceecchHHHHHHHH
Confidence 4789999999999999994 668999999999999999999999999999999999998888999999999999999987
Q ss_pred CCcCCCCCCChhhhhhhhhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCC
Q psy2293 222 RYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTS 301 (832)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~ 301 (832)
...-.+....+...+.+++|.|.||+||.+||...|+..+..+|..+||++........++|++.....++||+.|..|+
T Consensus 83 ~~~~~e~~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn 162 (811)
T KOG1929|consen 83 WLLNKEIRLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWN 162 (811)
T ss_pred hhhhccCccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhC
Confidence 76412222333445589999999999999999999999999999999999995555555666666666669999999999
Q ss_pred CeEeechhHHHhHhcCccccccccccCCC
Q psy2293 302 TYVVKARWFWMSIQNSECADESKYLFGKN 330 (832)
Q Consensus 302 i~iV~~~Wl~~si~~g~~~~E~~Y~~~~~ 330 (832)
++||+.+|+|+|+..++..++..|.+.+.
T Consensus 163 ~~v~~~~w~~~s~~~~~~~~~~~~e~~~~ 191 (811)
T KOG1929|consen 163 IPVVSDDWLFDSIEKTAVLETKPYEGAPV 191 (811)
T ss_pred CccccHHHHhhhhcccccccccccccccc
Confidence 99999999999999999999999999883
No 20
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.84 E-value=3.7e-21 Score=166.79 Aligned_cols=129 Identities=36% Similarity=0.632 Sum_probs=119.7
Q ss_pred cccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEe
Q psy2293 619 LINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKL 698 (832)
Q Consensus 619 L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~ 698 (832)
|++++|.||.+.++..+++.+.+++..+.+|||||.|.+||++.+..+.+|+|... +...+.|||...
T Consensus 1 LlSShRs~v~r~e~~eL~d~l~grGe~~tlFLfsD~lEi~kkR~kv~~~~KSP~~~------------~~~~~~~KHi~l 68 (129)
T cd01229 1 LLSSHRSLVQRVETISLGEHLCDRGEQVTLFLFNDCLEIARKRHKVIGTFKSPHGS------------TRPPASLKHIHL 68 (129)
T ss_pred CccchhhhhheeeeeeecccccCCCCeEEEEEecchHHHhhhcccccCCcCCCCCC------------CCCCcccceEEE
Confidence 57899999999999999999999999999999999999999999999999998761 223567999999
Q ss_pred ecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 699 LSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 699 i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
|||+.|+.|+||.|+ ++|+++|.|.++.+.++++..|+|+.+++|.+|..|++.|++++++
T Consensus 69 mpLs~IkrVvdI~Dt--E~c~~aF~L~~R~p~d~~~~L~sF~l~~Ee~~K~~~Lk~Lcr~~A~ 129 (129)
T cd01229 69 MPLSQIKKVLDIRDT--EDCHNAFALLVRPPTEQANVLLSFQMTSEELPKEVWLKMLCRHVAN 129 (129)
T ss_pred eEhHHeEEEEeeecc--ccccceeEEEEeCCccchheEEEEEecCCcchHHHHHHHHHHHhcC
Confidence 999999999999999 9999999999999999999999999999999999999999999874
No 21
>KOG3524|consensus
Probab=99.78 E-value=9e-20 Score=201.05 Aligned_cols=525 Identities=6% Similarity=-0.154 Sum_probs=393.4
Q ss_pred cCCCCCCceeEEEeecccCcHHHHHHHhhCCCceEee--cCCceEEecCCCCCcccccccccccchhhhCCCCCeEeCHH
Q psy2293 43 KDTEPGMPCQICVCSNVDQTETFKKALASFNVPVVLV--EDPDYFVHAKFDGPIIIVTSEFTNNFLRFHKPPQSRILGPT 120 (832)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~~~~i~gp~ 120 (832)
+..|+|++++.-|+|..++.+.+..++++.++-.+.- +-.-+|+.. | ..+ |..+.+. .+.+.++
T Consensus 44 ~i~i~q~dt~~dL~ge~sd~~~f~v~~d~~~~~~~~~h~e~E~~~~~~-~-~~~----------~~k~~~a-e~~~tl~- 109 (850)
T KOG3524|consen 44 NINIIQYDSLDDLSGDWSDYTFFCVNFDSDLFRTLTKHQETEALFIIG-A-SVL----------KNKLLKA-EDLMTLR- 109 (850)
T ss_pred ceeccccchHhHhhhhhhhceeeeeecchhhhhhhhccccceeecccc-H-HHH----------HHHHHHH-Hhhhccc-
Confidence 3578888888888888888888888887766544442 222355544 3 123 5566566 6666666
Q ss_pred HHHHHHHhccccccCCCCCCCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhH
Q psy2293 121 ALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYK 200 (832)
Q Consensus 121 ~v~~~~~~~~~~~~~lp~~~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~ 200 (832)
|.+..+ +.|....|.|++.|....- ++++...+.-.++.+...+||..........+|+.+.-.. .++.
T Consensus 110 ----~srply----~~~m~~vvlcfTg~rkk~e--~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~ 178 (850)
T KOG3524|consen 110 ----AARPLY----CELMKDVVMCFTGERKKKE--ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTM 178 (850)
T ss_pred ----cCCccc----chhhcCceeeeeccchhhH--HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-ccee
Confidence 888888 8999999999999988877 7777556666667778899999999999999999998887 8999
Q ss_pred HHhhcCCCeeeHHHHHHHHHcCCcCCCCCCChhhhhhhhhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCC
Q psy2293 201 YAMGFRVPVLTKEFVLSAWEKRYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPL 280 (832)
Q Consensus 201 ~A~~~~i~IV~~~Wv~dc~~~~~~~~~~~~~~~~~~~~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~ 280 (832)
.|.-.+.++.+++|++--|....-.+++...+.+...+..++|..+.+...+++.++...+... ..-||++. -.....
T Consensus 179 rp~wv~~aw~~rn~~yfda~~~~f~d~hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~-~d~~cthv-vv~e~~ 256 (850)
T KOG3524|consen 179 RPDWVTEAWKHRNDSYFDAMEPCFVDKHRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAP-SDTLCTHV-VVNEDN 256 (850)
T ss_pred chHhhhhhhcCcchhhhhhhccchhhhhccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccC-CCCCceeE-eecCCc
Confidence 9998899999999999999988777777766666667888999999999999998888888877 88999998 778888
Q ss_pred ceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcCcccccccccc-----C-C-----CCCCCchhhhhhhhhhhccc
Q psy2293 281 TTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLF-----G-K-----NFRTPDRAAKRKRLMEVVEE 349 (832)
Q Consensus 281 ~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~-----~-~-----~~~~p~~~~~~~rLsq~~~~ 349 (832)
|+|++...+..............|+...|.|+.+..-..+..-.|.. . + ..+.+.+.+.++|.....+.
T Consensus 257 ~~~~p~~~s~~~~~vk~ewfw~siq~g~~a~e~~yl~~~~~~~~~p~~~~~~s~pis~~kr~r~~~S~~~~r~~t~~g~~ 336 (850)
T KOG3524|consen 257 DEVEPLAVSSNQVHVKKEWFWVSIQRGCCAIEDNYLLPTGKLHRKPLESSSVSSPISKSKRSRNSRSLSSMRDCTVEGPT 336 (850)
T ss_pred cccccccccccceeecccceEEEEecchhccccceeccccceeccccccCcccccchhhhhhcCchhHHHHhcCcccCCC
Confidence 99999888766555554455788999999999999876664433322 1 1 12367777777777664421
Q ss_pred C-CCCCCCCCCCcccccCCCCccCCC----CccccCCCCCCC--CCc--ccccccCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2293 350 P-HSSPRKSRKKRTSDIDGTPRYSCG----SLLDYTTSPDNF--LAT--DESDVMIKGNSPRHQVFKELCQTESNYVNVL 420 (832)
Q Consensus 350 ~-~~~p~~~~~~r~S~~~~~~~~s~~----s~~d~s~s~~~~--~~~--~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L 420 (832)
. ..+|. .. +++.-.+..--|+. ...-+.+.++.+ .+. ...-+.......+.....+|++|+-+|+..+
T Consensus 337 ~~R~t~~--~i-~s~~d~~~sc~Ss~~~s~t~k~~~~~~etsk~~psk~s~r~~~~~~~y~tesnyv~il~Ti~~lf~~k 413 (850)
T KOG3524|consen 337 SLRMTPD--YI-YSNDDVENSCKSSRQPSKRLKVCMEMVETSKNYPSKLSLRVKFKEALYCTESNYVFILRTIVALFFGK 413 (850)
T ss_pred CcccCCc--cc-ccccccccCcCCcCCcccCcHHHHhccCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 12331 11 11111111111111 111122222211 111 0123444566778889999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHhHHHHhhhhhHHH
Q psy2293 421 RVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFI 500 (832)
Q Consensus 421 ~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~ 500 (832)
-..+..+-.|+.+.......+.+..++..+|+.+++++..|.....++++.+. .++...-+|++.|.+++
T Consensus 414 leei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e~k~el~----------kayppyvnffet~ke~~ 483 (850)
T KOG3524|consen 414 LEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIEAKEELK----------KAYPPYVNFFETIKELF 483 (850)
T ss_pred HHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHHHHHHHH----------HhccchhhHHHHhHHHH
Confidence 88888999999988877778888999999999999999888888877776442 23333334668888888
Q ss_pred hhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHH
Q psy2293 501 NFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLS 579 (832)
Q Consensus 501 ~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~ 579 (832)
..++.....+..+.+. +.+.+|.+.... .+.|+....-..+++|+|+|++ ++...+-+++.+..++...+.
T Consensus 484 ~~cdre~prfhaflKinq~kpecgRq~l~------dlmirpvqrlpsvilllndl~k--~s~N~dk~~leea~kaikev~ 555 (850)
T KOG3524|consen 484 DKCDRENPRFHAFLKINQSKPECGRQKLT------DLMIRPVQRLPSVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVL 555 (850)
T ss_pred HHHhccchHHHHHHHccccchhhhhhccc------chhccchhhhhHHHHHHHHHHh--hccCcchhhHHHhhhhHHHHH
Confidence 8889888888887666 999999998888 8999999999999999999999 888888889888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCC
Q psy2293 580 EALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENC 615 (832)
Q Consensus 580 ~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~ 615 (832)
.++...+......++..+..+.+.....+.-...++
T Consensus 556 khInedKrkte~~~~ifdkf~diegcpa~lvssnrs 591 (850)
T KOG3524|consen 556 KHINEDKRKTENFISIFDKFTDIEGCPAILVSSNRS 591 (850)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhhcCchhheeccch
Confidence 999999999999999999888877665554444443
No 22
>KOG1929|consensus
Probab=99.64 E-value=2.8e-15 Score=174.88 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=121.2
Q ss_pred CcHHHHHHHhhCCCceEeecCCceEEecCCCCCcccccccccccchhhhCCCCCeEeCHHHHHHHHHhcc--ccccCCCC
Q psy2293 61 QTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSEFTNNFLRFHKPPQSRILGPTALIEMSIKVE--NLSIPLRT 138 (832)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~~~~i~gp~~v~~~~~~~~--~~~~~lp~ 138 (832)
..++|++.+...|+.....-+++ -+|+|+++....+|..+... +++|+.++|+...+.... .+ +.++.
T Consensus 24 ~~~~l~~~~~~~Gg~~~~~~t~~--------~thli~~~~~s~~~~~a~~~-~~~~~~~~wi~~~~d~~~~~~e-~~~~~ 93 (811)
T KOG1929|consen 24 KREELSKKFIKLGGIDFKDFTPS--------VTHLIVGSVTSSKYAAAHRF-DIKVLDSSWIDYIYDLWLLNKE-IRLLD 93 (811)
T ss_pred HHHHHHHHHHhcCceeeeccCCc--------CceeecccccccchhhhhcC-CCceecchHHHHHHHHhhhhcc-CccCc
Confidence 77889999999997665543332 35677777777779888887 999999999988776554 11 12222
Q ss_pred C-CCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCC-hhhHHHhhcCCCeeeHHHHH
Q psy2293 139 R-IRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSG-EKYKYAMGFRVPVLTKEFVL 216 (832)
Q Consensus 139 ~-~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~-~Ky~~A~~~~i~IV~~~Wv~ 216 (832)
. .-=..+.+|.|+.||+|||. .++|.+|..+|..|||.+...|...++|++....-. .||+.|+.|+++||+.+|++
T Consensus 94 ~l~~~~~~p~~~~~~Vc~tgl~-~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~~w~~ 172 (811)
T KOG1929|consen 94 PLRDTMKCPGFFGLKVCLTGLS-GDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPVVSDDWLF 172 (811)
T ss_pred cchhhhcCCcccceEEEecccc-hHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCccccHHHHh
Confidence 2 11234788999999999999 567899999999999999999999999999887755 99999999999999999999
Q ss_pred HHHHcC
Q psy2293 217 SAWEKR 222 (832)
Q Consensus 217 dc~~~~ 222 (832)
+||.++
T Consensus 173 ~s~~~~ 178 (811)
T KOG1929|consen 173 DSIEKT 178 (811)
T ss_pred hhhccc
Confidence 999866
No 23
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.57 E-value=1.3e-15 Score=124.43 Aligned_cols=63 Identities=33% Similarity=0.725 Sum_probs=54.8
Q ss_pred eEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHH
Q psy2293 151 IVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEF 214 (832)
Q Consensus 151 ~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~W 214 (832)
++||+|||.+.+ +..|..++++|||.|.++|+..+|||||....|+||+.|.+||||||+|+|
T Consensus 1 ~~i~~sg~~~~~-~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKE-RSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTT-CCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHH-HHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 589999999655 799999999999999999999999999999999999999999999999999
No 24
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.54 E-value=8.1e-14 Score=124.21 Aligned_cols=102 Identities=15% Similarity=0.316 Sum_probs=84.3
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
+|.||++|.|.++.. ++.++|++|||||+||+++.... .+.|+....+||.
T Consensus 1 gR~li~eG~L~K~~r---k~~~~R~ffLFnD~LvY~~~~~~--------------------------~~~~~~~~~i~L~ 51 (104)
T cd01218 1 GRVLVGEGVLTKMCR---KKPKQRQFFLFNDILVYGNIVIS--------------------------KKKYNKQHILPLE 51 (104)
T ss_pred CCEEEecCcEEEeec---CCCceEEEEEecCEEEEEEeecC--------------------------CceeeEeeEEEcc
Confidence 699999999999873 55788999999999999976321 1238888899999
Q ss_pred ccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 703 SIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 703 ~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
++ .|.+++|. +...|+|.|... +..++++|.+.+ ||..|+++|.+|+....
T Consensus 52 ~~-~v~~~~d~--~~~~n~f~I~~~------~kSf~v~A~s~~-eK~eWl~~i~~ai~~~l 102 (104)
T cd01218 52 GV-QVESIEDD--GIERNGWIIKTP------TKSFAVYAATET-EKREWMLHINKCVTDLL 102 (104)
T ss_pred ce-EEEecCCc--ccccceEEEecC------CeEEEEEcCCHH-HHHHHHHHHHHHHHHHh
Confidence 99 78898886 567899998764 458999986655 99999999999998764
No 25
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.48 E-value=4.2e-13 Score=119.27 Aligned_cols=98 Identities=15% Similarity=0.240 Sum_probs=78.6
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
.||++|.|.+++. +..++|++|||||+||+|.+.... ...|+....+||.++
T Consensus 1 ~~ikEG~L~K~~~---k~~~~R~~FLFnD~LlY~~~~~~~-------------------------~~~y~~~~~i~L~~~ 52 (99)
T cd01220 1 EFIRQGCLLKLSK---KGLQQRMFFLFSDLLLYTSKSPTD-------------------------QNSFRILGHLPLRGM 52 (99)
T ss_pred CeeeEEEEEEEeC---CCCceEEEEEccceEEEEEeecCC-------------------------CceEEEEEEEEcCce
Confidence 4899999999874 347889999999999999876422 123888999999999
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.|.++++. ....|.|.|... +..|.++|++ +.||+.|+++|.++|.
T Consensus 53 -~V~~~~~~--~~~~~~F~I~~~------~ks~~l~A~s-~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 53 -LTEESEHE--WGVPHCFTIFGG------QCAITVAAST-RAEKEKWLADLSKAIA 98 (99)
T ss_pred -EEeeccCC--cCCceeEEEEcC------CeEEEEECCC-HHHHHHHHHHHHHHhh
Confidence 67777664 356789999743 5689999866 5599999999999985
No 26
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=5.2e-13 Score=120.26 Aligned_cols=109 Identities=13% Similarity=0.288 Sum_probs=84.8
Q ss_pred CeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 624 R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
+.||++|+|.+++.. .++.++||+|||||+||+||++.... +-| +.....|+++..+++..
T Consensus 2 ~elI~EG~L~ki~~~-~~~~q~R~~FLFd~~Li~CK~~~~~~---~~~---------------g~~~~~y~~k~~~~l~~ 62 (112)
T cd01261 2 NEFIMEGTLTRVGPS-KKAKHERHVFLFDGLMVLCKSNHGQP---RLP---------------GASSAEYRLKEKFFMRK 62 (112)
T ss_pred ccccccCcEEEEecc-cCCcceEEEEEecCeEEEEEeccCcc---ccc---------------ccccceEEEEEEEeeee
Confidence 579999999998732 35678999999999999999875421 001 11133599999999999
Q ss_pred cceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 704 IKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 704 i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
+ .|.+++|+ ++.+|+|.|.... +..+.|+|.+.+ ||+.||++|..++.
T Consensus 63 ~-~V~d~~d~--~~~knaF~I~~~~-----~~s~~l~Akt~e-eK~~Wm~~l~~~~~ 110 (112)
T cd01261 63 V-DINDKPDS--SEYKNAFEIILKD-----GNSVIFSAKNAE-EKNNWMAALISVQT 110 (112)
T ss_pred e-EEEEcCCC--cccCceEEEEcCC-----CCEEEEEECCHH-HHHHHHHHHHHHhc
Confidence 8 78888888 6789999997653 237999987655 99999999988775
No 27
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.44 E-value=1.1e-12 Score=119.43 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=79.2
Q ss_pred CeEEeeeeEEEecccc-------cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeE
Q psy2293 624 RSFVLKCDVIELSNML-------SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHI 696 (832)
Q Consensus 624 R~li~~g~l~~~~~~~-------~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~ 696 (832)
|+|+++|+|+.+.... ..+.+++|+|||||+||+||+|... .|...
T Consensus 1 RwLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~---------------------------~f~V~ 53 (125)
T cd01221 1 RWLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS---------------------------TFVVF 53 (125)
T ss_pred CceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC---------------------------eEEEE
Confidence 7999999999986421 1125789999999999999988633 25555
Q ss_pred EeecccccceEeeecCCCC--------cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 697 KLLSMTSIKKVYNVEDEAH--------DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 697 ~~i~L~~i~~v~~i~d~~~--------~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
...|.+.+ .|.++.+..+ ...+|.|.+.+..+++++...+.|+|.+ ++||.+||++|..
T Consensus 54 dy~~r~~l-~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S-~sdr~rWi~Al~~ 120 (125)
T cd01221 54 DYAPRSFL-RVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSADS-QSDRERWLSALAP 120 (125)
T ss_pred eeccccce-EEeecccccccccccccccCCCceEEEEeeccCCCCEEEEEEECCC-HHHHHHHHHhcCC
Confidence 55566655 4555544311 1457999999999999999999999865 6699999999854
No 28
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.33 E-value=1.4e-12 Score=111.39 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=70.0
Q ss_pred hhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCC--CCcccccccCCCCeEeechhHHHhH
Q psy2293 239 KLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDS--KVTCMPNVPCTSTYVVKARWFWMSI 314 (832)
Q Consensus 239 ~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~--~~~k~~~a~~~~i~iV~~~Wl~~si 314 (832)
+.++|+||.||+++++..+++.+.++|+.+||++. ...+..+||+|+... ...++..|..++++||+++||++||
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~-~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVS-NSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEE-SSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEE-eecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 45689999999999999999999999999999999 778999999999987 7788999999999999999999997
No 29
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.32 E-value=3.6e-12 Score=108.84 Aligned_cols=73 Identities=23% Similarity=0.496 Sum_probs=68.3
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC--CChhhHHHhhcCCCeeeHHHHHHHH
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV--SGEKYKYAMGFRVPVLTKEFVLSAW 219 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~--~~~Ky~~A~~~~i~IV~~~Wv~dc~ 219 (832)
.+|+|+.||+++++. .+++.+..+|+.+||.+...++..+||+|+.+. .+.||..|...++|||+++||.+|+
T Consensus 4 ~~F~g~~f~i~~~~~-~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 4 KIFEGCTFCISGFDS-DEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTTEEEEESSTSS-SHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCEEEEEccCCC-CCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 379999999988885 558999999999999999999999999999987 8999999999999999999999996
No 30
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.31 E-value=5.5e-13 Score=108.97 Aligned_cols=63 Identities=27% Similarity=0.357 Sum_probs=54.8
Q ss_pred ceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechh
Q psy2293 246 AKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARW 309 (832)
Q Consensus 246 ~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~W 309 (832)
++||++||++.++..+.++++.+||.|+ ..++.++||||+....++||..|.+|+++||+++|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~-~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYS-KDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEE-SSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEe-ccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 5799999999999999999999999999 55699999999999999999999999999999999
No 31
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.27 E-value=4.7e-11 Score=107.24 Aligned_cols=100 Identities=13% Similarity=0.252 Sum_probs=75.2
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
.||++|.|.+++.. .++.++||+|||||+||+|+++.... ...|+....++|+.+
T Consensus 1 e~ikeG~L~K~~~~-~~~~k~RyffLFnd~Ll~~~~~~~~~------------------------~~~y~~~~~i~l~~~ 55 (101)
T cd01219 1 ELLKEGSVLKISST-TEKTEERYLFLFNDLLLYCVPRKMIG------------------------GSKFKVRARIDVSGM 55 (101)
T ss_pred CcccceEEEEEecC-CCCceeEEEEEeCCEEEEEEcccccC------------------------CCcEEEEEEEecccE
Confidence 47899999998742 23568999999999999999753210 223889999999998
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.|.+.. + ....|+|.|.... ..|.++|.+ +.||+.|+++|..++.
T Consensus 56 -~v~~~~-~--~~~~~~F~I~~~~------rsf~l~A~s-~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 56 -QVCEGD-N--LERPHSFLVSGKQ------RCLELQART-QKEKNDWVQAIFSIID 100 (101)
T ss_pred -EEEeCC-C--CCcCceEEEecCC------cEEEEEcCC-HHHHHHHHHHHHHHhh
Confidence 444432 2 3467999985543 589999865 5599999999999875
No 32
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.26 E-value=5.7e-11 Score=107.73 Aligned_cols=109 Identities=13% Similarity=0.199 Sum_probs=80.4
Q ss_pred CeEEeeeeEEEecccc--cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 624 RSFVLKCDVIELSNML--SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 624 R~li~~g~l~~~~~~~--~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
..||.+|.+..+.... ..|+++|++|||+|+||+||++..+.+ .. ...|.++..|++
T Consensus 3 G~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~-~~--------------------~~~Y~yK~~ikl 61 (114)
T cd01232 3 GKLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQ-FG--------------------NPKYIYKSKLQV 61 (114)
T ss_pred CceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCC-CC--------------------ceeEEEecceee
Confidence 5688899987776532 357899999999999999998764311 11 123888889999
Q ss_pred cccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 702 TSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 702 ~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
++|. +++.+ +++...|.|+++.+. .....|+++|++.+ +|+.|+.+|++.+.
T Consensus 62 s~l~----l~e~v-~gd~~kF~i~~~~~~-~~~~~~ilqA~s~e-~K~~W~~~I~~il~ 113 (114)
T cd01232 62 SKMG----LTEHV-EGDPCRFALWSGDPP-ISDNRIILKANSQE-TKQEWVKKIREILQ 113 (114)
T ss_pred eeeE----eEEcc-CCCCceEEEEeCCCC-CCceEEEEECCCHH-HHHHHHHHHHHHhh
Confidence 9983 32322 334688999998762 13579999997655 99999999998764
No 33
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.25 E-value=7.4e-11 Score=104.55 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=79.5
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
.||++|++..++. ..++.++|++|||+..||+||+.... ...|.++..+.+..+
T Consensus 1 eli~~Gel~~~s~-~~g~~q~R~~FLFD~~LI~CKkd~~r-------------------------~~~~~yKgri~l~~~ 54 (109)
T cd01224 1 ELFLQGEATRQKQ-NKGWNSSRVLFLFDHQMVLCKKDLIR-------------------------RDHLYYKGRIDLDRC 54 (109)
T ss_pred CceEeeeEEEEec-ccCCcccEEEEEecceEEEEeccccc-------------------------CCcEEEEEEEEcccE
Confidence 4799999998873 24678899999999999999975422 113788888999998
Q ss_pred ceEeeecCCCCc----ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 705 KKVYNVEDEAHD----NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 705 ~~v~~i~d~~~~----~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
.|.+++|+... ...|+|.|..... +..|.|.|.+.+ +|++||++|..
T Consensus 55 -~I~d~~Dg~~~~~~~~~knafkl~~~~~----~~~~~f~~Kt~e-~K~~Wm~a~~~ 105 (109)
T cd01224 55 -EVVNIRDGKMFSSGHTIKNSLKIYSEST----DEWYLFSFKSAE-RKHRWLSAFAL 105 (109)
T ss_pred -EEEECCCCccccCCceeEEEEEEEEcCC----CeEEEEEECCHH-HHHHHHHHHHH
Confidence 78898887322 1479999998754 568999987655 99999999865
No 34
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.24 E-value=8.6e-11 Score=102.60 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=79.8
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
.+|++|.++.+........+.+++|||||+||++....+. +|+....+||.++
T Consensus 1 ~~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~~---------------------------ky~~~~~~~L~~i 53 (100)
T cd01226 1 KVILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAAG---------------------------KYVMESTYSLNSV 53 (100)
T ss_pred CEEEcCcEEEechhhCCccceEEEEEeccEEEEEEecccc---------------------------eEEEEEEEehHHe
Confidence 3789999999875433334567899999999999876421 3888899999999
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
.|++++|+ ++.+|+|.|...+. .+.++|.+++ +|.+||+.|.++.
T Consensus 54 -~V~ni~D~--~~~kNafki~t~~~------s~i~qaes~~-~K~eWl~~le~a~ 98 (100)
T cd01226 54 -AVVNVKDR--ENAKKVLKLLIFPE------SRIYQCESAR-IKTEWFEELEQAK 98 (100)
T ss_pred -EEEecCCC--cCcCceEEEEeCCc------cEEEEeCCHH-HHHHHHHHHHHHh
Confidence 89999999 78899999987655 6778886655 9999999999875
No 35
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.23 E-value=9.3e-11 Score=103.15 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=72.6
Q ss_pred CeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 624 R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
+.|+.+|.+.... .+++||+|||+++||+||++.. .|+++..+++++
T Consensus 2 geLlleg~l~~~~-----~~~eR~vFLFe~~ll~~K~~~~----------------------------~y~~K~~i~~~~ 48 (97)
T cd01222 2 GDLLLEGRFREHG-----GGKPRLLFLFQTMLLIAKPRGD----------------------------KYQFKAYIPCKN 48 (97)
T ss_pred CceeeeceEEeec-----CCCceEEEEecccEEEEEecCC----------------------------eeEEEEEEEecc
Confidence 4689999997543 3678999999999999998653 288888999999
Q ss_pred cceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 704 IKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 704 i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
+..+.++. ++.+.|.|.... ..+..|.|+|.+.+ +|+.|+++|.+++
T Consensus 49 l~i~e~~~-----~d~~~F~v~~~~---~p~~~~~l~A~s~e-~K~~W~~~i~~~i 95 (97)
T cd01222 49 LMLVEHLP-----GEPLCFRVIPFD---DPKGALQLTARNRE-EKRIWTQQLKRAM 95 (97)
T ss_pred eEEecCCC-----CCCcEEEEEecC---CCceEEEEEecCHH-HHHHHHHHHHHHh
Confidence 84433332 236999997654 23578999986655 9999999999876
No 36
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.18 E-value=6.2e-11 Score=98.56 Aligned_cols=71 Identities=25% Similarity=0.469 Sum_probs=64.1
Q ss_pred ceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChh-hHHHhhcCCCeeeHHHHHHHHH
Q psy2293 150 NIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEK-YKYAMGFRVPVLTKEFVLSAWE 220 (832)
Q Consensus 150 g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~K-y~~A~~~~i~IV~~~Wv~dc~~ 220 (832)
|+.||++|..+..++..+.+++..+||.+..+++..+||+|+.+....+ +..|...+++||+++||.+|++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 6789999987445678999999999999999999999999999887766 8999999999999999999974
No 37
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.16 E-value=3.7e-10 Score=104.74 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=79.5
Q ss_pred eEEeeeeEEEecccc---------cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCccee
Q psy2293 625 SFVLKCDVIELSNML---------SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKH 695 (832)
Q Consensus 625 ~li~~g~l~~~~~~~---------~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~ 695 (832)
+||.+|.+..+.+.. ..++++||+|||+.+||+||++......... ..|.+
T Consensus 2 ~ll~Qd~f~Vw~~~~~~~~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~--------------------p~Y~y 61 (133)
T cd01227 2 KLLMQGSFSVWTDHKKGHTKKELARFKPMQRHIFLHEKAVLFCKKREENGEGEKA--------------------PSYSF 61 (133)
T ss_pred CceEecceEEEEccccccchhhhhccCCceeEEEEecceEEEEEEeccCCCCCcc--------------------eeEEE
Confidence 578888887765422 2357899999999999999988543111112 23888
Q ss_pred EEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 696 IKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 696 ~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
+..|.++++ .+.+++ +++.+.|.||.+.+ ...|+++|++.+ .|+.|+++|++.+....
T Consensus 62 K~~ikls~l----glte~v-~gd~~kFeiw~~~~----~~~yilqA~t~e-~K~~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 62 KQSLKMTAV----GITENV-KGDTKKFEIWYNAR----EEVYILQAPTPE-IKAAWVNEIRKVLTSQL 119 (133)
T ss_pred eeeEEeecc----cccccC-CCCccEEEEEeCCC----CcEEEEEcCCHH-HHHHHHHHHHHHHHHHH
Confidence 888999988 344433 34568999999764 569999997655 99999999999886543
No 38
>KOG4269|consensus
Probab=99.14 E-value=3.6e-11 Score=136.82 Aligned_cols=268 Identities=19% Similarity=0.314 Sum_probs=212.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q psy2293 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYS 476 (832)
Q Consensus 397 ~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~ 476 (832)
+....|+.+.-.++..|..|.+.+..+. .=+.|++......++.+....++.||..+.+|+.+|..|...|-...+.|.
T Consensus 328 k~~~~rkl~dS~f~~~d~~~~~s~d~l~-l~~~p~~al~~tsqp~~~~~~~~t~~~k~s~i~~~hk~~~~~l~pk~q~~~ 406 (1112)
T KOG4269|consen 328 KGLEMRKLVDSGFLASDEHYSQSLDALL-LPMKPLKALATTSQPVLTKQQIETIFNKFSPIYEIHKEFYDNLHPKVQQWK 406 (1112)
T ss_pred hhHHHHHHHhcccccccchhhcccchhh-cccccccccCCCCCCCccccccccccccCCCchhhhhhhccccCchhhhhh
Confidence 5567889899999999999999998876 556778877777788999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHHHHhhhhhHHHhh--HHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHH
Q psy2293 477 DSVSIGEVFVKHCTAFKKVYPPFINF--FQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQR 553 (832)
Q Consensus 477 ~~~~Ig~vfl~~~~~f~~~Y~~Y~~n--~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQR 553 (832)
.....|..|.+....+ ..|..|+.+ |..++..-..|.+. +.|+..-.+..........-.....+...+|.+|+-|
T Consensus 407 sqs~~~~~~~~L~S~l-~n~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~~~~~~l~rpi~~ 485 (1112)
T KOG4269|consen 407 SQSNSGGLFQKLASQL-GNYLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWKDEEWLLYRPIDR 485 (1112)
T ss_pred hhhccCccchhhhhhc-chhhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCccchhhhhccchhh
Confidence 9999999999998877 799999999 88888888888777 8887554433321111112233456788899999999
Q ss_pred HhhHHHHHHHHHhhCCCCCccHH----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCC
Q psy2293 554 LGSISLLLNDILKNTSKSSTDHQ----------KLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSH 623 (832)
Q Consensus 554 i~rY~LLL~~llk~t~~~~~d~~----------~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~ 623 (832)
..+..+-|-++||++|-.|||+- .|+.|++....++..||+.... .++++.... ...
T Consensus 486 ~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~----~r~~~f~ks---------~~~ 552 (1112)
T KOG4269|consen 486 VTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEP----RRLLEFLKS---------GEL 552 (1112)
T ss_pred hhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccch----hhhhhhccc---------chh
Confidence 99999999999999999999997 9999999999999999986543 223222121 236
Q ss_pred CeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 624 R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
|++++.+.++.+.+ +..+-+++|||.+.|+++|-+..+.+. ...|-.++.+|+.+
T Consensus 553 rq~L~d~f~~~v~~---~~~~~~~~~~~~~~ll~tk~~~~k~~~----------------------nq~y~~~~~Ipl~d 607 (1112)
T KOG4269|consen 553 RQLLKDVFFVEVEE---AQRKLRHVFLFTNSLLCTKLKKLKDGK----------------------NQQYDCKWYIPLKD 607 (1112)
T ss_pred Hhhhhhheeecccc---ccccchhhHHHhhccchhhhhhhcccc----------------------cccCceeEEEeccc
Confidence 88888888887764 345668999999999999876543221 22377777888877
Q ss_pred c
Q psy2293 704 I 704 (832)
Q Consensus 704 i 704 (832)
.
T Consensus 608 ~ 608 (1112)
T KOG4269|consen 608 L 608 (1112)
T ss_pred c
Confidence 6
No 39
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.13 E-value=1.5e-10 Score=98.36 Aligned_cols=94 Identities=18% Similarity=0.283 Sum_probs=69.8
Q ss_pred CeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 624 R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
|+||++|.++++.+ ++++.|++|||||+|++++-+..+.+. ...|+....+||.+
T Consensus 1 r~Lv~eg~lvel~~---~~rK~R~~FLFnDlLvc~~ik~~~~~k----------------------~~kY~~~w~IPL~d 55 (96)
T cd01228 1 RQLVKDSFLVELVE---GSRKLRHLFLFTDVLLCAKLKKTSRGK----------------------HQQYDCKWYIPLAD 55 (96)
T ss_pred Ccccccceeeeehh---CCCcceEEEeeccEEEEEEeeeccCcc----------------------ccccceeEEEEhHH
Confidence 78999999999874 678899999999999999976433111 23599999999999
Q ss_pred cceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 704 IKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 704 i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
+ .+.++ .|.+.. .....|+|.|+|. .||.+|++.|.+..
T Consensus 56 l-~~~~~----------~~~~~~-----~~~KSf~~~asS~-~Er~eW~~hI~~~~ 94 (96)
T cd01228 56 L-SFPSE----------PFRIHN-----KNGKSYTFLLSSD-YERSEWRESIQKLQ 94 (96)
T ss_pred h-eecch----------hhhccc-----cCCceEEEEecCH-HHHHHHHHHHHHHh
Confidence 8 22222 244331 2256899998664 59999999998764
No 40
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.11 E-value=2.4e-10 Score=97.21 Aligned_cols=75 Identities=27% Similarity=0.522 Sum_probs=66.5
Q ss_pred CCCceEEEEcC-CCChHhHHHHHHHHHhcCCEEEeecCc-ceeEEEeccCCChh--hHHHhhcCCCeeeHHHHHHHHHcC
Q psy2293 147 SMQNIVICITG-FRNKQETMKLIDITKHMGGKLRKEMNY-QVTHLIANCVSGEK--YKYAMGFRVPVLTKEFVLSAWEKR 222 (832)
Q Consensus 147 ~~~g~~i~~tg-~~~~~~~~~l~~~v~~~GG~~~~~l~~-~~THLIa~~~~~~K--y~~A~~~~i~IV~~~Wv~dc~~~~ 222 (832)
+|+|+.+|++| +. ...++.+.+++..+||.+...++. .+||+|+.+....+ +..|...++|||+++||.+|++.+
T Consensus 2 ~f~g~~~~~~g~~~-~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~~ 80 (80)
T smart00292 2 LFKGKVFVITGKFD-KNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKAG 80 (80)
T ss_pred ccCCeEEEEeCCCC-CccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHCc
Confidence 68999999999 55 455789999999999999999998 99999999886655 578889999999999999999864
No 41
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.10 E-value=1.2e-10 Score=99.14 Aligned_cols=76 Identities=28% Similarity=0.430 Sum_probs=66.8
Q ss_pred cccccceEEecC-CChhhHHHHHHHHHhCCCEeecCCCCC-CceEEEEeCCCCcc--cccccCCCCeEeechhHHHhHhc
Q psy2293 241 KLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDEP-LTTHVVVDDSKVTC--MPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 241 ~~F~g~~i~~~g-~~~~e~~~l~~li~~~GG~~~~~~~~~-~~THlI~~~~~~~k--~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
++|+|++||++| +...++..+.+++..+||++. ..... .+||+|+......+ +..+...+++||+++||++|++.
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~-~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~ 79 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVT-SSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKA 79 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEe-cccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHC
Confidence 479999999999 999999999999999999999 55565 89999999866644 46677899999999999999987
Q ss_pred C
Q psy2293 317 S 317 (832)
Q Consensus 317 g 317 (832)
+
T Consensus 80 ~ 80 (80)
T smart00292 80 G 80 (80)
T ss_pred c
Confidence 4
No 42
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.03 E-value=3e-10 Score=94.41 Aligned_cols=70 Identities=26% Similarity=0.335 Sum_probs=63.2
Q ss_pred cceEEecCCC-hhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcc-cccccCCCCeEeechhHHHhHh
Q psy2293 245 GAKVNFFGFS-EEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTC-MPNVPCTSTYVVKARWFWMSIQ 315 (832)
Q Consensus 245 g~~i~~~g~~-~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k-~~~a~~~~i~iV~~~Wl~~si~ 315 (832)
|+.|+++|+. ..++..+.+++..+||++. ...+..+||+|+......+ +..|..++++||+++||++|++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~-~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVT-SSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEe-ccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 6899999998 8999999999999999999 6667899999999876655 7778889999999999999985
No 43
>KOG3226|consensus
Probab=98.98 E-value=6.1e-10 Score=115.56 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=76.8
Q ss_pred cccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHcCC
Q psy2293 144 FCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRY 223 (832)
Q Consensus 144 ~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~ 223 (832)
++.+|+||++.++||.+.+ |..|......||+.|..|++..+|||||.-..++||......|-.||+-+||.+|.+.+.
T Consensus 314 l~klL~GVV~VlSGfqNP~-Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~kk 392 (508)
T KOG3226|consen 314 LSKLLEGVVFVLSGFQNPE-RSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQKK 392 (508)
T ss_pred HHHhhhceEEEEecccCch-HHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHHh
Confidence 4678999999999999754 899999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCC
Q psy2293 224 DVNF 227 (832)
Q Consensus 224 ~~~~ 227 (832)
.++.
T Consensus 393 ~lp~ 396 (508)
T KOG3226|consen 393 LLPI 396 (508)
T ss_pred hccH
Confidence 5544
No 44
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.73 E-value=5.7e-08 Score=87.04 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=74.0
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
+++..|++...+. ..+++++||+|||+-++|+||++....+ . ..|.++..+.|..+
T Consensus 3 R~~~DGelk~k~~-~~~k~k~RyiFLFDk~lI~CK~~~~~~~---~--------------------~~Y~~Ke~~~l~~~ 58 (116)
T cd01223 3 RPLLDGEVRIKAS-EDQKTKLRYIFLFDKAVIVCKALGDNTG---D--------------------MQYTYKDIHDLADY 58 (116)
T ss_pred ccccCCceEEeEe-ccCCCceeEEEEecceEEEEEecCCCCC---C--------------------ccEEhHHhhhhhee
Confidence 4566788766543 2256889999999999999998865321 1 13777777888886
Q ss_pred ceEeee-cCCC--CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 705 KKVYNV-EDEA--HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 705 ~~v~~i-~d~~--~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
+...+. .|+. .....++|.|..... ...++|.|-+ +.+|+.||++|..|+++.
T Consensus 59 ~I~~~~~~d~~~~~~~~~~~f~L~~~~~----~~~~~f~~Kt-ee~K~kWm~al~~a~sni 114 (116)
T cd01223 59 KIENNPSRDTEGRDTRWKYGFYLAHKQG----KTGFTFYFKT-EHLRKKWLKALEMAMSNI 114 (116)
T ss_pred eeEecCccCcccCCcceEEEEEEEecCC----CccEEEEeCC-HHHHHHHHHHHHHHHhcC
Confidence 333321 2330 012467888887643 3468888755 559999999999999875
No 45
>KOG0966|consensus
Probab=98.67 E-value=2.3e-07 Score=106.13 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=118.8
Q ss_pred CCccccCCCceEEEE-cCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEe--ccCCChhhHHHhhcCCCeeeHHHHHH
Q psy2293 141 RPLFCHSMQNIVICI-TGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIA--NCVSGEKYKYAMGFRVPVLTKEFVLS 217 (832)
Q Consensus 141 ~P~~~~~~~g~~i~~-tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa--~~~~~~Ky~~A~~~~i~IV~~~Wv~d 217 (832)
.+-.+.+|.|+.||+ +|......++.+.++|..+||.+..+++...||.|+ +...+.+...|++.+..||+|.||.|
T Consensus 627 ~~~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlld 706 (881)
T KOG0966|consen 627 VAKISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLD 706 (881)
T ss_pred ccchhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHH
Confidence 344466899999998 787755557899999999999999999998999885 55556666666666999999999999
Q ss_pred HHHcCCcCC------CCCCChhhh---h-------------------------------------------hhhhcc-cc
Q psy2293 218 AWEKRYDVN------FKADEPSFM---N-------------------------------------------QYKLKL-FQ 244 (832)
Q Consensus 218 c~~~~~~~~------~~~~~~~~~---~-------------------------------------------~~~~~~-F~ 244 (832)
|......+. +++++.... + .++.+. |.
T Consensus 707 cc~~~~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~S~ds~~~~~~~~~~~~e~r~~~~~~ 786 (881)
T KOG0966|consen 707 CCKKQRLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGIKKSQDSLPPMGASEKDSLERRFSLFLS 786 (881)
T ss_pred HHhhhhccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhhhhcccccCchhhhhhhcHHHhhccccc
Confidence 987554221 122221100 0 011121 22
Q ss_pred cceEEe--cCCChhhHHHHHHHHHhCCCEeecCCCC-----CCceEEEEeCCC-C---cccccccC--CCCeEeechhHH
Q psy2293 245 GAKVNF--FGFSEEDEEQLQELLLSNGGKPSLSSDE-----PLTTHVVVDDSK-V---TCMPNVPC--TSTYVVKARWFW 311 (832)
Q Consensus 245 g~~i~~--~g~~~~e~~~l~~li~~~GG~~~~~~~~-----~~~THlI~~~~~-~---~k~~~a~~--~~i~iV~~~Wl~ 311 (832)
.|++.. .++-..+-....-.++..||.+++.... ...||+|+.-.+ + .+...+.. ..-+||++.|+.
T Consensus 787 ~~~~f~~~~~~~~se~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~ 866 (881)
T KOG0966|consen 787 SLRMFYVLRRKLSSEEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVD 866 (881)
T ss_pred cceeeecccccccHHHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHH
Confidence 222221 2222233333444556669998854322 336999987211 1 11222211 122899999999
Q ss_pred HhHhcCccccccccc
Q psy2293 312 MSIQNSECADESKYL 326 (832)
Q Consensus 312 ~si~~g~~~~E~~Y~ 326 (832)
+|++.+..++|..|.
T Consensus 867 ~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 867 HSINENCLLPEEDFP 881 (881)
T ss_pred HhhcccccCccccCC
Confidence 999999999999884
No 46
>KOG3226|consensus
Probab=98.45 E-value=2.1e-07 Score=97.08 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=83.6
Q ss_pred cccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcCccc
Q psy2293 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECA 320 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~ 320 (832)
.+++|.+|.++||...+|..|..-...+|++|. ..-...||||||.-.++.||....-.|-.||+-+||.+|.....++
T Consensus 316 klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~-pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~kk~l 394 (508)
T KOG3226|consen 316 KLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQ-PDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQKKLL 394 (508)
T ss_pred HhhhceEEEEecccCchHHHHHHHHHhhccccc-CCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHHhhc
Confidence 478999999999999999999999999999999 5567889999999999999999999999999999999999999999
Q ss_pred cccccccCCC
Q psy2293 321 DESKYLFGKN 330 (832)
Q Consensus 321 ~E~~Y~~~~~ 330 (832)
+...|++...
T Consensus 395 p~rrYlm~~~ 404 (508)
T KOG3226|consen 395 PIRRYLMHAG 404 (508)
T ss_pred cHHHHHhcCC
Confidence 9999999765
No 47
>KOG0931|consensus
Probab=98.38 E-value=3.5e-06 Score=90.44 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=129.1
Q ss_pred hhHHhhhHHHHHhhHHHHHHHHHhhCC----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCC-CC
Q psy2293 543 LPDLLIRPVQRLGSISLLLNDILKNTS----KSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENC-PP 617 (832)
Q Consensus 543 L~slLi~PvQRi~rY~LLL~~llk~t~----~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~-~~ 617 (832)
+.+-=++|=+|+ .|++++|+.- ...-+++.|...++.|+.---+.|+ +...++..+.+.|.|. +.
T Consensus 339 mySPnVKperkM-----~leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktnd-----DHVsqVqkVer~IVGkk~~ 408 (627)
T KOG0931|consen 339 MYSPNVKPERKM-----KLEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTND-----DHVSQVQKVERAIVGKKPP 408 (627)
T ss_pred ccCCCCCHHHhh-----hHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCc-----chHHHHHHHHHHHhcCCCc
Confidence 333345666554 3566666653 2345578888888888765444444 3455677788889886 44
Q ss_pred ccccCCCeEEeeeeEEEecccccC---CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcce
Q psy2293 618 QLINSHRSFVLKCDVIELSNMLSH---RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYK 694 (832)
Q Consensus 618 ~L~~~~R~li~~g~l~~~~~~~~~---k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk 694 (832)
-|..++|+|+..+-|..+.+.... ...+|-+|||||+|+++|--.++.. ..+|.
T Consensus 409 vLs~phRRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV~K~~~kkk~-----------------------s~TYt 465 (627)
T KOG0931|consen 409 VLSLPHRRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVVTKIFQKKKT-----------------------SVTYT 465 (627)
T ss_pred ccccCCceEEEEEeeeecCCCCchhhcccccceeeeecchhhhhhhhccCcc-----------------------eeEee
Confidence 678899999999999998753211 1478999999999999985443311 12477
Q ss_pred eEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 695 HIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 695 ~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
+...++|-.+ .+.-.++ +.+.+...|+...+...+...+.|.|.+.+ |+..+..+|...|++..
T Consensus 466 f~qs~~Llgm-hv~lFqn---~yY~fGitltsp~~g~e~k~~ihFnA~n~~-dr~kFv~Dl~ESIaEvt 529 (627)
T KOG0931|consen 466 FRQSFLLLGM-HVQLFQN---GYYEFGITLTSPVPGSEKKVLIHFNAPNFQ-DRCKFVADLRESIAEVT 529 (627)
T ss_pred hhhhhhHHHH-HHHHHhh---ccccCceEEeccCCCCceeEEEEecCCCHH-HHHHHHHHHHHHHHHHH
Confidence 8888888777 4444444 356677777777776677788999998877 99999999999998765
No 48
>KOG3548|consensus
Probab=98.35 E-value=7.6e-07 Score=102.80 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=105.8
Q ss_pred ccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEe-------------------ecC-------cceeEEEeccC-CCh
Q psy2293 145 CHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRK-------------------EMN-------YQVTHLIANCV-SGE 197 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~-------------------~l~-------~~~THLIa~~~-~~~ 197 (832)
..+|.|++|.+|+....+ +.....+..+||.+.+ +|. ..--.||+... .+.
T Consensus 923 kniFd~cvF~lTsa~~sd--~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~ 1000 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANRSD--SASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTH 1000 (1176)
T ss_pred cchhcceeEEEeccccch--hhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHH
Confidence 478999999999987323 3445555556766532 221 12335777765 789
Q ss_pred hhHHHhhcCCCeeeHHHHHHHHHcCCcCCCCCCChhhhhhhhhc---------------------------------ccc
Q psy2293 198 KYKYAMGFRVPVLTKEFVLSAWEKRYDVNFKADEPSFMNQYKLK---------------------------------LFQ 244 (832)
Q Consensus 198 Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~F~ 244 (832)
||..|+..|||+|++.||.+|.+.++..++. +|.+| .+.
T Consensus 1001 KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~--------~YLLpsGyS~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~ 1072 (1176)
T KOG3548|consen 1001 KYLEALARGIPCVHNTFIQACGEQNRCVDYT--------DYLLPSGYSIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLS 1072 (1176)
T ss_pred HHHHHHHcCCCcccHHHHHHHHhccccccch--------hhcccCccccccccccccCccccCchhhccceeeEeecccc
Confidence 9999999999999999999999999877653 22221 233
Q ss_pred cceEEecCCChhhHHHHHHHHHhCCCEeecCC-----CCCC------ceEEEEeCCCCcccccccCCCCeEeechhHHHh
Q psy2293 245 GAKVNFFGFSEEDEEQLQELLLSNGGKPSLSS-----DEPL------TTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMS 313 (832)
Q Consensus 245 g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~-----~~~~------~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~s 313 (832)
|..|.+.|=. .---.++.-|.+.||.-+-+. .+.. .-||+.......-.++|-.-+.++|+++|+.+|
T Consensus 1073 ~~~v~q~gp~-~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l~~pvvs~EWvIQt 1151 (1176)
T KOG3548|consen 1073 AREVTQTGPG-GTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTLGAPVVSSEWVIQT 1151 (1176)
T ss_pred ceeEEEecCC-cchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHhCCCccChhHhhee
Confidence 3444555543 334455555556666532121 1111 223333333334455666778999999999999
Q ss_pred HhcCccccc
Q psy2293 314 IQNSECADE 322 (832)
Q Consensus 314 i~~g~~~~E 322 (832)
|-.|.....
T Consensus 1152 iI~~~~i~~ 1160 (1176)
T KOG3548|consen 1152 IILGKAIEP 1160 (1176)
T ss_pred eeccccCCc
Confidence 999876543
No 49
>KOG4362|consensus
Probab=98.20 E-value=3.1e-06 Score=97.18 Aligned_cols=163 Identities=25% Similarity=0.291 Sum_probs=120.3
Q ss_pred ceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC------CChhhHHHhhcCCCeeeHHHHHHHHHcCC
Q psy2293 150 NIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV------SGEKYKYAMGFRVPVLTKEFVLSAWEKRY 223 (832)
Q Consensus 150 g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~------~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~ 223 (832)
-.+.+++|+.+.+ ++.++..+.. ++.+.+...+||+|++.. .+.||..++..|+.|++..|+.+|++.++
T Consensus 478 k~~~~~s~l~p~e-k~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~ 553 (684)
T KOG4362|consen 478 KLVLLVSGLTPSE-KQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRK 553 (684)
T ss_pred ceeeeeccCCcch-HHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcC
Confidence 4677889998644 6778777766 888889999999999865 68899999999999999999999999997
Q ss_pred cCCCCCCC---------hh------hhhhhhhcccccceEEecC-CChhhHHHHHHHHHhCCCEeecC----CCCCCceE
Q psy2293 224 DVNFKADE---------PS------FMNQYKLKLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLS----SDEPLTTH 283 (832)
Q Consensus 224 ~~~~~~~~---------~~------~~~~~~~~~F~g~~i~~~g-~~~~e~~~l~~li~~~GG~~~~~----~~~~~~TH 283 (832)
.+++..++ +. -...++..+|+|+.|||.| |+..-.+++++++...||.+..- ..+.+++-
T Consensus 554 ~~~eepfEl~~d~~~~~~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~ 633 (684)
T KOG4362|consen 554 WVSEEPFELQIDVPGAREGPKEKRLRAESYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVAYSDKKKST 633 (684)
T ss_pred CCCCCCeeEeecccCcccCcccccccccccCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCcccccccccc
Confidence 66553221 11 1124567899999999988 88888999999999999997511 12233443
Q ss_pred EEE-eCCCC------ccc----ccccCCCCeEeechhHHHhHhc
Q psy2293 284 VVV-DDSKV------TCM----PNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 284 lI~-~~~~~------~k~----~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
+++ ...-. +|. ..|...+...|+..|+.|+|.-
T Consensus 634 ~~~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~ 677 (684)
T KOG4362|consen 634 IVVLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAG 677 (684)
T ss_pred eeEeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhc
Confidence 333 22111 111 1234578899999999999865
No 50
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.16 E-value=1.8e-06 Score=102.81 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=76.9
Q ss_pred hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCC-----CcccccccCCCCeEeechhHHHhH
Q psy2293 240 LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSK-----VTCMPNVPCTSTYVVKARWFWMSI 314 (832)
Q Consensus 240 ~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~-----~~k~~~a~~~~i~iV~~~Wl~~si 314 (832)
-++|.|++|+|+|--...|..++++|+.+||+++ ... ..+||+|+.... +.|+..|.+.||+||+.+||++|+
T Consensus 187 ~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvs-ssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~i 264 (815)
T PLN03122 187 GKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVA-NSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDSI 264 (815)
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEc-ccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHHH
Confidence 3579999999999665689999999999999999 443 779999987733 368999999999999999999999
Q ss_pred hcCccccccccccCC
Q psy2293 315 QNSECADESKYLFGK 329 (832)
Q Consensus 315 ~~g~~~~E~~Y~~~~ 329 (832)
+.+..+++..|.+..
T Consensus 265 ~~~k~~~~~~y~l~~ 279 (815)
T PLN03122 265 EKQEAQPLEAYDVVS 279 (815)
T ss_pred hcCCcccchhhhhcc
Confidence 999999999998854
No 51
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.98 E-value=0.00011 Score=65.27 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=71.0
Q ss_pred CeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 624 R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
...++-..|..-. ..+....+||++||...|++.....+.. + |.+...+||+.
T Consensus 10 G~vi~mS~V~~~~-~~~qe~~eRyLvLFp~~LlilS~s~r~s------------------------G--f~yqGkLPL~~ 62 (111)
T cd01225 10 GNVIHMSQVAVQY-GAGEEKRERYLVLFPNVLLMLSASPRMS------------------------G--FIYQGKLPLTG 62 (111)
T ss_pred CceEEEEEEEEec-CCccccceeEEEEcCceEEEEEcCCCcc------------------------c--eEEeeeecccc
Confidence 3445555444322 2234468999999999999998754321 1 77778899999
Q ss_pred cceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 704 IKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 704 i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
+ .|..++++ ++.+++|.|....- ....+.|++ +.|.++|+..|.+.+
T Consensus 63 i-~v~~lEd~--e~~~~aFeI~G~li-----~~i~v~C~~-~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 63 I-IVTRLEDT--EALKNAFEISGPLI-----ERIVVVCNN-PQDAQEWVELLNANN 109 (111)
T ss_pred c-EEechHhc--cCccceEEEeccCc-----CcEEEEeCC-HHHHHHHHHHHHhhc
Confidence 9 77778888 77789999976543 245566655 459999999998754
No 52
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=97.96 E-value=3.9e-05 Score=72.41 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=46.9
Q ss_pred EEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCC----cccccCCCCCcccccccccccCCCCCCcc-e-eEEee
Q psy2293 626 FVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKY----VNVLKSPNTSKMSLSTYKTQAKHPIDKTY-K-HIKLL 699 (832)
Q Consensus 626 li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~----~~~~k~p~~~~~~~~~~k~~~~~~~~~~y-k-~~~~i 699 (832)
||++|.|.+.++. .....++++||||++||+||.+... +.+.+.|.....| .+......+.....- . -...+
T Consensus 1 Li~~G~L~Rk~~~-~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL-~l~~~~d~~~~~~~~~r~s~s~~ 78 (135)
T PF15405_consen 1 LIYKGDLKRKGDN-SFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELL-VLESMDDPPPQRSIAKRPSSSLI 78 (135)
T ss_dssp -----------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG--EEEE--TTTS---------S---
T ss_pred Ccccccccccccc-ccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHe-eeecccCCCcccCcccccccCcc
Confidence 5788988775532 1124599999999999999987533 1233333331111 111000000000000 0 00000
Q ss_pred cccccce-EeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 700 SMTSIKK-VYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 700 ~L~~i~~-v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
+-..... .....+. ......|.+.+++-. .....|+|.|.+ +.+|+.|++.|.+++
T Consensus 79 ~~~~~~~~~~~~~~~--~~~~~~yp~~~~hlG-~~~~~~TLyA~s-~~~R~~W~e~I~~qq 135 (135)
T PF15405_consen 79 SSSSSNSNSPSNPNS--SDSKSLYPFTFRHLG-RKGYSYTLYASS-AQARQKWLEKIEEQQ 135 (135)
T ss_dssp ----SHHHH----------TSSEEEEEE---G-GG-EEEEEE-SS-HHHHHHHHHHHHHH-
T ss_pred CCccCCCCccceeee--ccCCCccCEEEEEcC-CCceEEEEEeCC-HHHHHHHHHHHHhcC
Confidence 0000000 0000011 233567777776542 233459999865 669999999998763
No 53
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.94 E-value=2.3e-05 Score=93.59 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=67.7
Q ss_pred cccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC-----CChhhHHHhhcCCCeeeHHHHHHH
Q psy2293 144 FCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV-----SGEKYKYAMGFRVPVLTKEFVLSA 218 (832)
Q Consensus 144 ~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~-----~~~Ky~~A~~~~i~IV~~~Wv~dc 218 (832)
....|.|++||+||--.. .|..+.++|+.+||.+...+ +.+||+|+... ++.|+..|..+|||||+.+|+.+|
T Consensus 186 ~~kpL~G~~fviTGtl~~-sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~ 263 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDS 263 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHH
Confidence 345689999999997644 57899999999999999999 55668777653 247999999999999999999999
Q ss_pred HHcCCcCC
Q psy2293 219 WEKRYDVN 226 (832)
Q Consensus 219 ~~~~~~~~ 226 (832)
++.+...+
T Consensus 264 i~~~k~~~ 271 (815)
T PLN03122 264 IEKQEAQP 271 (815)
T ss_pred HhcCCccc
Confidence 99874433
No 54
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.91 E-value=0.00018 Score=64.04 Aligned_cols=100 Identities=8% Similarity=0.086 Sum_probs=72.8
Q ss_pred EEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccc
Q psy2293 626 FVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIK 705 (832)
Q Consensus 626 li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~ 705 (832)
.+++|.|...+ ...++.+.+|++|+++.|++.+..... ........++|.++
T Consensus 1 ~~~~G~L~~~~-~~~~~wk~r~~vL~~~~L~~~~~~~~~--------------------------~~~~~~~~i~l~~~- 52 (104)
T PF00169_consen 1 CIKEGWLLKKS-SSRKKWKKRYFVLRDSYLLYYKSSKDK--------------------------SDSKPKGSIPLDDC- 52 (104)
T ss_dssp EEEEEEEEEEE-SSSSSEEEEEEEEETTEEEEESSTTTT--------------------------TESSESEEEEGTTE-
T ss_pred CEEEEEEEEEC-CCCCCeEEEEEEEECCEEEEEecCccc--------------------------cceeeeEEEEecCc-
Confidence 36889998876 334557899999999999999865531 01344556888888
Q ss_pred eEeeecCCC---CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 706 KVYNVEDEA---HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 706 ~v~~i~d~~---~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
.+....+.. .....+.|.|.+... ..|.|.|.+ +.+++.|+++|..++
T Consensus 53 ~v~~~~~~~~~~~~~~~~~f~i~~~~~-----~~~~~~~~s-~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 53 TVRPDPSSDFLSNKKRKNCFEITTPNG-----KSYLFSAES-EEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEETSSTSTSTSSSSSEEEEEETTS-----EEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred eEEEcCccccccccCCCcEEEEEeCCC-----cEEEEEcCC-HHHHHHHHHHHHHHh
Confidence 555555541 135678999987654 579999865 559999999999875
No 55
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.83 E-value=1.3e-05 Score=97.77 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=77.3
Q ss_pred hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeC---CCCcccccccCCCCeEeechhHHHhHhc
Q psy2293 240 LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD---SKVTCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 240 ~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~---~~~~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
.++|.|+.|++.|-.+.....+.+.|+.+||+++ ......+||||+.. ..+.++..|...+++||+.+||.+|++.
T Consensus 391 ~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s-~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~~ 469 (981)
T PLN03123 391 SEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFH-ATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKK 469 (981)
T ss_pred CCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEe-eeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHhc
Confidence 4789999999999666667899999999999999 66677899999876 3446778888889999999999999999
Q ss_pred CccccccccccCC
Q psy2293 317 SECADESKYLFGK 329 (832)
Q Consensus 317 g~~~~E~~Y~~~~ 329 (832)
+..+++..|.+..
T Consensus 470 ~~~~p~~~y~~~~ 482 (981)
T PLN03123 470 KKKLPFDKYKLEA 482 (981)
T ss_pred cccCcchhhhhcc
Confidence 9999999997753
No 56
>KOG2043|consensus
Probab=97.79 E-value=0.00011 Score=88.93 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=99.3
Q ss_pred eEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC-CChhhHHHhhcCCCeeeHHHHHHHHHcCCcCCC--
Q psy2293 151 IVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV-SGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNF-- 227 (832)
Q Consensus 151 ~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~-~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~-- 227 (832)
+.+.|+++.+ ...+...++.+||.+.... ...||+|+... .+.|+..|...|+|||++.|+.+|.+.|..+++
T Consensus 660 ~~~lfs~~~~---~~~~k~~~k~lg~s~~ss~-~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~ 735 (896)
T KOG2043|consen 660 IEVLFSDKND---GKNYKLAKKFLGGSVASSD-SEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKP 735 (896)
T ss_pred eeeeeeeccC---chhhhhHHhhccceeeccc-ccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCcc
Confidence 5667777763 2467888999998888774 56799999877 799999999999999999999999999976654
Q ss_pred -CCCChhhhhhhh------------hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCC
Q psy2293 228 -KADEPSFMNQYK------------LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSD 277 (832)
Q Consensus 228 -~~~~~~~~~~~~------------~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~ 277 (832)
...|++...+|. -|.++|..||++-....-...+-++|+..||.+.....
T Consensus 736 yil~D~ekEk~~gf~l~ssl~RAr~~plL~g~~v~vtp~v~p~~~~v~eiie~~ggnvv~~~p 798 (896)
T KOG2043|consen 736 YILHDEEKEKEFGFRLKSSLLRARADPLLEGINVHVTPSVTPSPKTVVEIIEISGGNVVSDSP 798 (896)
T ss_pred ccccCHHHHhccCcchhhHHHHhhcchhhcCceEEeccccccCcchhHHHHhhcCcceecccC
Confidence 335555444431 27899999999998888899999999999999984443
No 57
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.78 E-value=4.8e-05 Score=92.91 Aligned_cols=82 Identities=10% Similarity=0.280 Sum_probs=70.4
Q ss_pred ccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC---CChhhHHHhhcCCCeeeHHHHHHHH
Q psy2293 143 LFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV---SGEKYKYAMGFRVPVLTKEFVLSAW 219 (832)
Q Consensus 143 ~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~---~~~Ky~~A~~~~i~IV~~~Wv~dc~ 219 (832)
.....|.|+.|+++|-.+.. ...+..+|+.+||+++..++..|||||+... .+.|++.|...+||||+.+||.||.
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~-~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~ 467 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEK-VTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCF 467 (981)
T ss_pred ccCCCcCCeEEEEecCCCCc-HHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHH
Confidence 33467999999999966433 4789999999999999999999999999853 5778999999999999999999999
Q ss_pred HcCCcC
Q psy2293 220 EKRYDV 225 (832)
Q Consensus 220 ~~~~~~ 225 (832)
......
T Consensus 468 ~~~~~~ 473 (981)
T PLN03123 468 KKKKKL 473 (981)
T ss_pred hccccC
Confidence 877544
No 58
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.72 E-value=0.00047 Score=60.45 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=68.6
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
+++|.|........+..+.++++|+++.|.+.+....... ......++|.++ .
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~--------------------------~~~~~~i~l~~~-~ 54 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKD--------------------------YKPKGSIDLSGI-T 54 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCcccc--------------------------CCCceEEECCcC-E
Confidence 5788887765423456789999999999999987653210 233445788887 4
Q ss_pred EeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 707 VYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 707 v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
+....+.......+.|.|..... ..+.|.|.+ +.+++.|+.+|..++
T Consensus 55 v~~~~~~~~~~~~~~f~l~~~~~-----~~~~f~~~s-~~~~~~W~~~i~~~~ 101 (102)
T smart00233 55 VREAPDPDSAKKPHCFEIKTADR-----RSYLLQAES-EEEREEWVDALRKAI 101 (102)
T ss_pred EEeCCCCccCCCceEEEEEecCC-----ceEEEEcCC-HHHHHHHHHHHHHhh
Confidence 55544431113468888876543 589999865 459999999998765
No 59
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.67 E-value=0.00014 Score=79.14 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=64.2
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCC--hhhHHHhhcCCCeeeHHHHHHHHH
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSG--EKYKYAMGFRVPVLTKEFVLSAWE 220 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~--~Ky~~A~~~~i~IV~~~Wv~dc~~ 220 (832)
.+.|.+|+|||--. ..|.++.++|..+||.+...++++|++||+++..+ .|.++|.++||||++.+=+.+.+.
T Consensus 232 l~~g~~~v~TG~l~-~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll~ 306 (313)
T PRK06063 232 LVQGMRVALSAEVS-RTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELLR 306 (313)
T ss_pred ccCCCEEEEecCCC-CCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHHH
Confidence 47899999998664 35899999999999999999999999999998766 799999999999999886666553
No 60
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.59 E-value=0.00018 Score=78.27 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=61.7
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC---------CChhhHHHhhc-----CCCeeeH
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV---------SGEKYKYAMGF-----RVPVLTK 212 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~---------~~~Ky~~A~~~-----~i~IV~~ 212 (832)
.|.|.+|||||--..-.|.++.++|+.+||.+...++++|++||++.. .|.|+++|.++ +|+|++-
T Consensus 220 ~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~E 299 (309)
T PRK06195 220 AFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNE 299 (309)
T ss_pred cccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEecH
Confidence 599999999997644458999999999999999999999999999953 46799999988 9999987
Q ss_pred HHHHHH
Q psy2293 213 EFVLSA 218 (832)
Q Consensus 213 ~Wv~dc 218 (832)
+=+.+.
T Consensus 300 ~~f~~l 305 (309)
T PRK06195 300 EEFLQK 305 (309)
T ss_pred HHHHHH
Confidence 644443
No 61
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.57 E-value=0.00015 Score=85.78 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=66.3
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHH
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWE 220 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~ 220 (832)
..|.|.+||+||--..-.|.++.++|+.+||.+....+++|++|||+...|.|..+|.++||||++.+.+.+.+.
T Consensus 592 ~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~l~ 666 (669)
T PRK14350 592 SFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSYVD 666 (669)
T ss_pred CccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHHhc
Confidence 358999999999543345889999999999999999999999999998888999999999999999998877543
No 62
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.50 E-value=0.00023 Score=84.68 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=68.8
Q ss_pred ccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCC-hhhHHHhhcCCCeeeHHHHHHHHHc
Q psy2293 145 CHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSG-EKYKYAMGFRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~-~Ky~~A~~~~i~IV~~~Wv~dc~~~ 221 (832)
...|.|.+|||||.-..-.|.++.++|+.+||.+....+++|++||++...| .|..+|.++||+|++.+-+.+.++.
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 3468999999999875445899999999999999999999999999998766 7999999999999999988887765
No 63
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.49 E-value=0.00023 Score=84.65 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHc
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~ 221 (832)
.|.|.+|||||.-..-.|.++.++|+.+||.++...+++|++||++...|.|..+|.++||||++-+-+.+.+..
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 489999999998754358899999999999999999999999999988889999999999999999888776653
No 64
>PF15411 PH_10: Pleckstrin homology domain
Probab=97.35 E-value=0.0021 Score=58.91 Aligned_cols=113 Identities=11% Similarity=0.169 Sum_probs=70.0
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
-+.|+..|.+....+ ...++.++|||..+||+||..+......+.-+ .........++..+..+-++
T Consensus 4 fG~Lll~g~~~V~k~---~~erE~~vYLFe~illc~kE~~~~~~~~~~~~----------~~~~~~~~~~L~LKGrI~i~ 70 (116)
T PF15411_consen 4 FGELLLHGTLTVGKD---DSEREYEVYLFEKILLCCKEVKPKKKKSKQIS----------SKKKKKKKTKLQLKGRIYIS 70 (116)
T ss_pred ccceEEccEEEEEeC---CcceeeeeeeeeeeEEEEecCccCccchhhcc----------cccccCCCceEEEeeEEEEE
Confidence 356778888877543 45789999999999999998765422111000 00012223457777888888
Q ss_pred ccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHH
Q psy2293 703 SIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLREL 755 (832)
Q Consensus 703 ~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L 755 (832)
++..|..... .......|..++..+ ...|++.+.+ +..++.|-.+|
T Consensus 71 ~i~~v~~~s~----~g~~~L~i~w~~d~e--~~~F~lrf~n-ee~l~~W~~~L 116 (116)
T PF15411_consen 71 NITEVSSSSK----PGSYSLQISWKGDPE--LENFTLRFRN-EEQLEQWRSAL 116 (116)
T ss_pred eeeeeeccCC----CCceEEEEEEcCCCC--CceEEEEeCC-HHHHHHHHhhC
Confidence 7755554432 234566666644433 4567777755 44999998764
No 65
>KOG3548|consensus
Probab=97.33 E-value=0.00092 Score=78.17 Aligned_cols=177 Identities=12% Similarity=0.051 Sum_probs=115.4
Q ss_pred CCCCCCceeEEEeecccCcHHHHHHHhhCCCceEeecCCceEEecCCCCCc-------------------ccccc--ccc
Q psy2293 44 DTEPGMPCQICVCSNVDQTETFKKALASFNVPVVLVEDPDYFVHAKFDGPI-------------------IIVTS--EFT 102 (832)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~-------------------i~~~~--~~~ 102 (832)
.....-.|-|+|-+....++..+.+++.+|+.+++..=-. |.-.+|.|.- +|+.+ +..
T Consensus 922 gkniFd~cvF~lTsa~~sd~~~r~s~e~~gg~vle~gl~~-~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~ 1000 (1176)
T KOG3548|consen 922 GKNIFDGCVFMLTSANRSDSASRPSMEKHGGLVLEKGLMN-LFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTH 1000 (1176)
T ss_pred CcchhcceeEEEeccccchhhhhhhhhccCChhhhccccc-cccccccCCcchHHhhhHHhhhccccceeEeehhhhHHH
Confidence 3556678899999999999999999999998888752111 2233333221 33333 223
Q ss_pred ccchhhhCCCCCeEeCHHHHHHHHHhccccccCCCCCCC-----------------Ccc---cc-----------CCCce
Q psy2293 103 NNFLRFHKPPQSRILGPTALIEMSIKVENLSIPLRTRIR-----------------PLF---CH-----------SMQNI 151 (832)
Q Consensus 103 ~~f~~~~~~~~~~i~gp~~v~~~~~~~~~~~~~lp~~~~-----------------P~~---~~-----------~~~g~ 151 (832)
+|-.+... ++|.|.+.||.+|++.++ .++...| |.+ .. .+.+-
T Consensus 1001 -KYLeaLA~-giPcVh~~fI~aC~e~nr----~Vdy~~YLLpsGyS~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~ 1074 (1176)
T KOG3548|consen 1001 -KYLEALAR-GIPCVHNTFIQACGEQNR----CVDYTDYLLPSGYSIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLSAR 1074 (1176)
T ss_pred -HHHHHHHc-CCCcccHHHHHHHHhccc----cccchhhcccCccccccccccccCccccCchhhccceeeEeeccccce
Confidence 37777778 999999999999999888 5443211 110 11 12233
Q ss_pred EEEEcCCCChHhHHHHHHHHHhcCCEEEeec------------CcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHH
Q psy2293 152 VICITGFRNKQETMKLIDITKHMGGKLRKEM------------NYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAW 219 (832)
Q Consensus 152 ~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l------------~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~ 219 (832)
.|.++|-.. .. -+++.-+...||...-++ ..-.-||++......-.+.|-..+.|+|+++||-+|+
T Consensus 1075 ~v~q~gp~~-~f-~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l~~pvvs~EWvIQti 1152 (1176)
T KOG3548|consen 1075 EVTQTGPGG-TF-IEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTLGAPVVSSEWVIQTI 1152 (1176)
T ss_pred eEEEecCCc-ch-HHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHhCCCccChhHhheee
Confidence 344444332 22 345556667777654443 2445577777776666777778899999999999999
Q ss_pred HcCCcCCCCC
Q psy2293 220 EKRYDVNFKA 229 (832)
Q Consensus 220 ~~~~~~~~~~ 229 (832)
-.+..+.+.+
T Consensus 1153 I~~~~i~~~~ 1162 (1176)
T KOG3548|consen 1153 ILGKAIEPNA 1162 (1176)
T ss_pred eccccCCccc
Confidence 9888766553
No 66
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.31 E-value=0.00033 Score=83.30 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=61.3
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHH
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKE 213 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~ 213 (832)
..|.|.+|||||.-..-.|.++.++|+.+||.+....+++|++||++...|.|+.+|.++||+|++-+
T Consensus 583 ~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~ 650 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEE 650 (652)
T ss_pred CCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechh
Confidence 45899999999976444588999999999999999999999999999887889999999999999865
No 67
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.00057 Score=78.96 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=66.4
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHH
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSA 218 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc 218 (832)
..|.|.+|++||--+.-.|.++..+++.+||.++...+++|+.|||+..-|.|+.+|.++||+|++-+++...
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHHh
Confidence 5799999999997655568899999999999999999999999999999888999999999999999887653
No 68
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.04 E-value=0.00071 Score=80.20 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=66.8
Q ss_pred ccccceEEecC-CChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHh
Q psy2293 242 LFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQ 315 (832)
Q Consensus 242 ~F~g~~i~~~g-~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~ 315 (832)
+|.|.+|+||| |+.-.|..++++|+++||+++ ...+.+++.||+++..|.|+..|.+-||+|++.+.|++-+.
T Consensus 593 ~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~-ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~l~ 666 (669)
T PRK14350 593 FLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFN-TCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSYVD 666 (669)
T ss_pred ccCCcEEEEecccCCCCHHHHHHHHHHcCCEEe-ccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHHhc
Confidence 59999999999 777789999999999999999 77888999999999888999999999999999999987554
No 69
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.04 E-value=0.003 Score=54.62 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=55.8
Q ss_pred CCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCc
Q psy2293 641 HRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQ 720 (832)
Q Consensus 641 ~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~ 720 (832)
+..+.++++|+++.|.+++...... .+.....++|.+. .+....+. ....+
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~--------------------------~~~~~~~i~l~~~-~v~~~~~~--~~~~~ 64 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKK--------------------------SYKPKGSIPLSGA-EVEESPDD--SGRKN 64 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCc--------------------------CCCCcceEEcCCC-EEEECCCc--CCCCc
Confidence 4567999999999999998654321 0222335667764 44444333 23468
Q ss_pred eEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 721 IFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 721 ~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
.|.|..... ..+.|.|.+ +.+++.|+.+|+.
T Consensus 65 ~f~i~~~~~-----~~~~~~~~s-~~~~~~W~~~l~~ 95 (96)
T cd00821 65 CFEIRTPDG-----RSYLLQAES-EEEREEWIEALQS 95 (96)
T ss_pred EEEEecCCC-----cEEEEEeCC-HHHHHHHHHHHhc
Confidence 888876543 589999866 5599999999975
No 70
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.94 E-value=0.0074 Score=52.51 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=61.2
Q ss_pred eeEEEecccc---cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 630 CDVIELSNML---SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 630 g~l~~~~~~~---~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
|.+....... .+..+.++++|+++.|.+.+.+.... ... ..+++..+.
T Consensus 3 g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~---------------------------~~~-~~~~l~~~~- 53 (99)
T cd00900 3 GYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKE---------------------------IKP-GSIPLSEIS- 53 (99)
T ss_pred cEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCc---------------------------CCC-CEEEccceE-
Confidence 4454444322 24578999999999999998775431 000 245666664
Q ss_pred EeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 707 VYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 707 v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
+....+. .+..+.|.|....+ ....+.|+|.+.+ +++.|+.+|..
T Consensus 54 v~~~~~~--~~~~~~F~i~~~~~---~~~~~~~~~~~~~-~~~~W~~al~~ 98 (99)
T cd00900 54 VEEDPDG--SDDPNCFAIVTKDR---GRRVFVFQADSEE-EAQEWVEALQQ 98 (99)
T ss_pred EEECCCC--CCCCceEEEECCCC---CcEEEEEEcCCHH-HHHHHHHHHhc
Confidence 4444332 23468899877642 3568999987654 99999999975
No 71
>KOG2481|consensus
Probab=96.90 E-value=0.0011 Score=73.04 Aligned_cols=84 Identities=27% Similarity=0.386 Sum_probs=65.5
Q ss_pred cccccceEEecCCChhhHHHHHHHHHhCCCEeecCC---------CCCCceEEEEeCCCCc-ccccccCCCCeEeechhH
Q psy2293 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSS---------DEPLTTHVVVDDSKVT-CMPNVPCTSTYVVKARWF 310 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~---------~~~~~THlI~~~~~~~-k~~~a~~~~i~iV~~~Wl 310 (832)
..|+|++|++.. +--|+.|.-+|...||.+..+. .+...||=|++.+... ++ -|-.-|.|+|+
T Consensus 326 slF~glkFfl~r--eVPresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~YvQPQWv 398 (570)
T KOG2481|consen 326 SLFSGLKFFLNR--EVPRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTYVQPQWV 398 (570)
T ss_pred HHhhcceeeeec--cCchHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeeeecchhh
Confidence 379999999984 3457889999999999998552 2234699999886432 22 35667899999
Q ss_pred HHhHhcCccccccccccCCCC
Q psy2293 311 WMSIQNSECADESKYLFGKNF 331 (832)
Q Consensus 311 ~~si~~g~~~~E~~Y~~~~~~ 331 (832)
+|||..|..++...|......
T Consensus 399 fDsvNar~llpt~~Y~~G~~L 419 (570)
T KOG2481|consen 399 FDSVNARLLLPTEKYFPGKAL 419 (570)
T ss_pred hhhccchhhccHhhhCCCccC
Confidence 999999999999999886643
No 72
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=96.89 E-value=0.012 Score=52.79 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=61.6
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
+++|-|.+.++. .+.-+.|++.|-+..|.+-|..... .....++|+++ .
T Consensus 3 ~k~G~L~Kkg~~-~k~WkkRwfvL~~~~L~yyk~~~~~-----------------------------~~~~~I~L~~~-~ 51 (100)
T cd01233 3 SKKGYLNFPEET-NSGWTRRFVVVRRPYLHIYRSDKDP-----------------------------VERGVINLSTA-R 51 (100)
T ss_pred ceeEEEEeeCCC-CCCcEEEEEEEECCEEEEEccCCCc-----------------------------cEeeEEEeccc-E
Confidence 577888776543 3446899999999999988865421 12234666655 2
Q ss_pred EeeecCCC-CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 707 VYNVEDEA-HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 707 v~~i~d~~-~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
+...++.. ..+..+.|.|... .+.|.|+|.+.+ |++.|+++|...++
T Consensus 52 v~~~~~~~~~~~~~~~F~I~t~------~rt~~~~A~s~~-e~~~Wi~ai~~~~~ 99 (100)
T cd01233 52 VEHSEDQAAMVKGPNTFAVCTK------HRGYLFQALSDK-EMIDWLYALNPLYA 99 (100)
T ss_pred EEEccchhhhcCCCcEEEEECC------CCEEEEEcCCHH-HHHHHHHHhhhhhc
Confidence 22222210 0013578888543 458999986654 99999999976653
No 73
>KOG0930|consensus
Probab=96.76 E-value=0.014 Score=59.63 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=78.8
Q ss_pred HHHHHHHhccCCCCc------------cccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCC
Q psy2293 604 SLFDIYQDIENCPPQ------------LINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSP 671 (832)
Q Consensus 604 ~l~~l~~~i~~~~~~------------L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p 671 (832)
.|..+...|..-|+. +..+.| +|.|.+++++.-...+.|+++|-+++|-+-.-..+ |.|
T Consensus 230 ~LrnlyeSi~~epFkIPeddgndlthtffnpdR----EGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTD-----KEP 300 (395)
T KOG0930|consen 230 LLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDR----EGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTD-----KEP 300 (395)
T ss_pred HHHHHHHHhcCCCCCCCcccCCcchhhccCccc----cceeeeecCCcccchhheeEEeecceeeeeeeccC-----CCC
Confidence 456677777654322 334444 68888876433334678999999999988764432 222
Q ss_pred CCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCc----------------cccce
Q psy2293 672 NTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSD----------------EVIET 735 (832)
Q Consensus 672 ~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~----------------~~~~~ 735 (832)
+..+||.++ .+..+.+.. -.+.|.|+..+.. +++..
T Consensus 301 ------------------------rGIIpLeNl-sir~VedP~---kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~ 352 (395)
T KOG0930|consen 301 ------------------------RGIIPLENL-SIREVEDPK---KPNCFELYIPSNKGQVIKACKTEADGRVVEGNHS 352 (395)
T ss_pred ------------------------Ccceecccc-ceeeccCCC---CCCeEEEecCCCCcCeeeeecccCCceeEeccce
Confidence 224677776 556666652 3477887765541 23456
Q ss_pred EEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 736 TYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 736 ~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
+|-++|.+.| ||+.|++.|..+++.
T Consensus 353 vYrIsA~~~E-e~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 353 VYRISAPTPE-EKDEWIKSIKAAISR 377 (395)
T ss_pred EEEeeCCCHH-HHHHHHHHHHHHhcc
Confidence 7999987766 999999999998873
No 74
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=96.72 E-value=0.0016 Score=70.85 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=61.8
Q ss_pred cccccceEEecC-CChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeC---------CCCcccccccCC-----CCeEe
Q psy2293 241 KLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD---------SKVTCMPNVPCT-----STYVV 305 (832)
Q Consensus 241 ~~F~g~~i~~~g-~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~---------~~~~k~~~a~~~-----~i~iV 305 (832)
++|.|.+|+||| |..-.|..++++++.+||.++ +..+.++++||++. ..+.|+..|.+. +|+|+
T Consensus 219 ~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~-~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii 297 (309)
T PRK06195 219 TAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVG-SSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFL 297 (309)
T ss_pred ccccCCEEEEccccCCCCHHHHHHHHHHhCCEec-CCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEe
Confidence 479999999999 446789999999999999999 78888999999985 335788888765 99999
Q ss_pred echhHHHhHh
Q psy2293 306 KARWFWMSIQ 315 (832)
Q Consensus 306 ~~~Wl~~si~ 315 (832)
+-+=|++=++
T Consensus 298 ~E~~f~~l~~ 307 (309)
T PRK06195 298 NEEEFLQKCK 307 (309)
T ss_pred cHHHHHHHHh
Confidence 9876666554
No 75
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=96.68 E-value=0.016 Score=52.53 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=59.0
Q ss_pred EeeeeEEEecccccC----CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 627 VLKCDVIELSNMLSH----RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 627 i~~g~l~~~~~~~~~----k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
|++|-|++.+.+... ..+.|++.|=++.|.+-+..... .-+.+..|+|.
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~---------------------------~~~~kG~I~L~ 53 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK---------------------------RGSKKGSIDLS 53 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc---------------------------ccCcceeEECC
Confidence 356667665432221 34789999977788887654321 01233467888
Q ss_pred ccceEeeecCCCCc----ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 703 SIKKVYNVEDEAHD----NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 703 ~i~~v~~i~d~~~~----~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
.+..+....+.... ...+.|.|.... ..|.++|.+ +.|++.|+++|++
T Consensus 54 ~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~------r~~yl~A~s-~~er~~WI~ai~~ 105 (106)
T cd01238 54 KIKCVETVKPEKNPPIPERFKYPFQVVHDE------GTLYVFAPT-EELRKRWIKALKQ 105 (106)
T ss_pred cceEEEEecCCcCcccccccCccEEEEeCC------CeEEEEcCC-HHHHHHHHHHHHh
Confidence 77556555444111 135678886643 367778765 5599999999974
No 76
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=96.68 E-value=0.0022 Score=76.47 Aligned_cols=74 Identities=20% Similarity=0.149 Sum_probs=66.7
Q ss_pred ccccceEEecCCCh-hhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhc
Q psy2293 242 LFQGAKVNFFGFSE-EDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 242 ~F~g~~i~~~g~~~-~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
+|.|.+|+|||.-. -.|..++++++.+||+++ ...+.+++.||++...+.|+..|.+.||+|++.+-|++-+..
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~-~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVS-GSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEe-CcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 38999999999764 489999999999999999 778889999999998889999999999999999999887754
No 77
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=96.64 E-value=0.0022 Score=69.82 Aligned_cols=74 Identities=23% Similarity=0.152 Sum_probs=65.0
Q ss_pred cccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCC--cccccccCCCCeEeechhHHHhHh
Q psy2293 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKV--TCMPNVPCTSTYVVKARWFWMSIQ 315 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~--~k~~~a~~~~i~iV~~~Wl~~si~ 315 (832)
|.|.|.+|+|||=-...|..++++++.+||+++ +..+.+++.||+++..+ .|...|.+.||+|++.+=|++-+.
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~-~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll~ 306 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYS-DSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELLR 306 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEec-CccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHHH
Confidence 458999999999544799999999999999999 78888999999998666 799999999999999887777654
No 78
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.62 E-value=0.016 Score=51.49 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=56.0
Q ss_pred ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceE
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIF 722 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F 722 (832)
.+.|++.|=+..|.+.+... -+.+..|||+.++.|..+.+.. -...+.|
T Consensus 21 ~KkRwF~Lt~~~L~Y~k~~~------------------------------~~~~g~I~L~~i~~ve~v~~~~-~~~~~~f 69 (98)
T cd01244 21 FKKRYFQLTTTHLSWAKDVQ------------------------------CKKSALIKLAAIKGTEPLSDKS-FVNVDII 69 (98)
T ss_pred CceeEEEECCCEEEEECCCC------------------------------CceeeeEEccceEEEEEcCCcc-cCCCceE
Confidence 47888888888898887332 1234568999998888877652 2234788
Q ss_pred EEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 723 ALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 723 ~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
+|.... ..|.++|.+ +.|++.|+++|++
T Consensus 70 qivt~~------r~~yi~a~s-~~E~~~Wi~al~k 97 (98)
T cd01244 70 TIVCED------DTMQLQFEA-PVEATDWLNALEK 97 (98)
T ss_pred EEEeCC------CeEEEECCC-HHHHHHHHHHHhc
Confidence 887643 389999865 5599999999975
No 79
>COG5275 BRCT domain type II [General function prediction only]
Probab=96.61 E-value=0.0075 Score=59.30 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=68.5
Q ss_pred CccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC-CChhhHHHhhcCCCeeeHHHHHHHHH
Q psy2293 142 PLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV-SGEKYKYAMGFRVPVLTKEFVLSAWE 220 (832)
Q Consensus 142 P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~-~~~Ky~~A~~~~i~IV~~~Wv~dc~~ 220 (832)
|.-+.++.|++|.|||.-+--+|..-..+|...||+++...+.++|+||+++. +-.|.+.+..++||++.-+=++..+.
T Consensus 151 eg~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~LI~ 230 (276)
T COG5275 151 EGERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSLIK 230 (276)
T ss_pred CCCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHHHh
Confidence 44566899999999999865567888899999999999999999999999976 55689999999999999888877765
No 80
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.55 E-value=0.021 Score=49.65 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=57.5
Q ss_pred eeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEe
Q psy2293 629 KCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVY 708 (832)
Q Consensus 629 ~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~ 708 (832)
+|.|.+.+.. .+..+.++++|.++.|.+.+...... ......++|.... +
T Consensus 2 ~G~L~k~~~~-~~~W~~r~~vl~~~~L~~~~~~~~~~---------------------------~~~~~~i~l~~~~-~- 51 (91)
T cd01246 2 EGWLLKWTNY-LKGWQKRWFVLDNGLLSYYKNKSSMR---------------------------GKPRGTILLSGAV-I- 51 (91)
T ss_pred eEEEEEeccc-CCCceeeEEEEECCEEEEEecCccCC---------------------------CCceEEEEeceEE-E-
Confidence 5667665432 24468899999999999987654320 1122345666552 1
Q ss_pred eecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 709 NVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 709 ~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
...+ ...+.|.|.... ...|.|+|.+.+ |++.|+.+|+.|
T Consensus 52 ~~~~----~~~~~F~i~~~~-----~~~~~~~a~s~~-e~~~Wi~al~~a 91 (91)
T cd01246 52 SEDD----SDDKCFTIDTGG-----DKTLHLRANSEE-ERQRWVDALELA 91 (91)
T ss_pred EECC----CCCcEEEEEcCC-----CCEEEEECCCHH-HHHHHHHHHHhC
Confidence 2211 225888886533 268999986655 999999999753
No 81
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=96.52 E-value=0.0032 Score=75.15 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=66.4
Q ss_pred ccccceEEecCCCh-hhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCC-cccccccCCCCeEeechhHHHhHhc
Q psy2293 242 LFQGAKVNFFGFSE-EDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKV-TCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 242 ~F~g~~i~~~g~~~-~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~-~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
+|.|.+|+|||.-. -.|..++++|+.+||+++ ...+.+++.||++...+ .|+..|.+.||.|++.+-|++-++.
T Consensus 609 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~-~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 609 ALDGLTFVFTGSLSGYTRSEAQELVEAHGGNAT-GSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEc-CCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 59999999999654 489999999999999999 77888999999998777 7999999999999999999887765
No 82
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=96.52 E-value=0.02 Score=51.54 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=26.8
Q ss_pred ceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 720 QIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 720 ~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
+.|.|... ++.|.|.|.+ +.|++.|+++|+.++.
T Consensus 68 ~~F~i~t~------~Rty~l~a~s-~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 68 YGVTLVTP------ERKFLFACET-EQDRREWIAAFQNVLS 101 (103)
T ss_pred ceEEEEeC------CeEEEEECCC-HHHHHHHHHHHHHHhc
Confidence 37777553 5699999865 5599999999998874
No 83
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.38 E-value=0.029 Score=50.04 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=53.5
Q ss_pred CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCC-cccCc
Q psy2293 642 RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAH-DNDRQ 720 (832)
Q Consensus 642 k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~-~~~~~ 720 (832)
.-+.|++.|=+..|.+-|..... .|. ...++|+++..|....+... .+-.+
T Consensus 18 ~WkrRwF~L~~~~L~y~K~~~~~-----~~~-----------------------~g~IdL~~~~sVk~~~~~~~~~~~~~ 69 (101)
T cd01264 18 RWKTRYFTLSGAQLLFQKGKSKD-----DPD-----------------------DCSIDLSKIRSVKAVAKKRRDRSLPK 69 (101)
T ss_pred cceeEEEEEeCCEEEEEeccCcc-----CCC-----------------------CceEEcccceEEeeccccccccccCc
Confidence 35678888888887665543221 111 12477888866665543310 12247
Q ss_pred eEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 721 IFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 721 ~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
+|.|.... ++|.|+|.+ +.+++.|+++|..|+
T Consensus 70 ~Fei~tp~------rt~~l~A~s-e~e~e~WI~~i~~a~ 101 (101)
T cd01264 70 AFEIFTAD------KTYILKAKD-EKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEEEcCC------ceEEEEeCC-HHHHHHHHHHHHhhC
Confidence 89886654 499999865 559999999998763
No 84
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=96.35 E-value=0.0032 Score=74.99 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=60.2
Q ss_pred ccccceEEecCC-ChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechh
Q psy2293 242 LFQGAKVNFFGF-SEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARW 309 (832)
Q Consensus 242 ~F~g~~i~~~g~-~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~W 309 (832)
+|.|.+|+|||. ..-.|..++++++.+||+++ ...+.+++.||+++..+.|+..|.+.||+|++-+.
T Consensus 584 ~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~-~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 584 PLAGKTFVLTGTLSQMSRDEAKELLENLGGKVA-SSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CccCcEEEEeccCCCCCHHHHHHHHHHcCCEEe-CCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 599999999995 45689999999999999999 77888999999998878899999999999998654
No 85
>KOG2043|consensus
Probab=96.34 E-value=0.0025 Score=77.29 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=66.3
Q ss_pred EEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeC-CCCcccccccCCCCeEeechhHHHhHhcCccccccccc
Q psy2293 248 VNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD-SKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYL 326 (832)
Q Consensus 248 i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~-~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~ 326 (832)
+-|+++. +...+.+.++.+||.++ ....++||+|+.. ..+-|+..|...|++||+++||.+|++.|.++||..|.
T Consensus 662 ~lfs~~~--~~~~~k~~~k~lg~s~~--ss~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~yi 737 (896)
T KOG2043|consen 662 VLFSDKN--DGKNYKLAKKFLGGSVA--SSDSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPYI 737 (896)
T ss_pred eeeeecc--CchhhhhHHhhccceee--cccccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCcccc
Confidence 4455553 34557888888999998 5678899999987 45688889999999999999999999999999999999
Q ss_pred cCCC
Q psy2293 327 FGKN 330 (832)
Q Consensus 327 ~~~~ 330 (832)
+.+.
T Consensus 738 l~D~ 741 (896)
T KOG2043|consen 738 LHDE 741 (896)
T ss_pred ccCH
Confidence 8764
No 86
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.12 E-value=0.084 Score=49.33 Aligned_cols=100 Identities=9% Similarity=0.094 Sum_probs=62.4
Q ss_pred eeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceE
Q psy2293 628 LKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKV 707 (832)
Q Consensus 628 ~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v 707 (832)
++|-|.+.+.. .+..+.|++.|-++.|.+-+.... -+....++|.++ .|
T Consensus 2 k~G~L~K~~~~-~~~WkkRwfvL~~~~L~yyk~~~~-----------------------------~~~~g~I~L~~~-~v 50 (125)
T cd01252 2 REGWLLKQGGR-VKTWKRRWFILTDNCLYYFEYTTD-----------------------------KEPRGIIPLENV-SI 50 (125)
T ss_pred cEEEEEEeCCC-CCCeEeEEEEEECCEEEEEcCCCC-----------------------------CCceEEEECCCc-EE
Confidence 46777665432 244688999999888777653221 122345777765 33
Q ss_pred eeecCCCCcccCceEEEEecCCc---------------cccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 708 YNVEDEAHDNDRQIFALRCRGSD---------------EVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 708 ~~i~d~~~~~~~~~F~l~~~~~~---------------~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
....+. ...+.|.|...... ......|.|+|.+ +.|++.|+++|..++...
T Consensus 51 ~~~~~~---~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s-~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 51 REVEDP---SKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAAN-DEEMDEWIKSIKASISPN 116 (125)
T ss_pred EEcccC---CCCeeEEEECCccccccccccccccccccccCceEEEEECCC-HHHHHHHHHHHHHHHhcC
Confidence 333332 34577887664431 0224688899865 559999999999888643
No 87
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.10 E-value=0.046 Score=48.42 Aligned_cols=90 Identities=8% Similarity=0.012 Sum_probs=56.7
Q ss_pred eeeEEEecccccC----CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 629 KCDVIELSNMLSH----RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 629 ~g~l~~~~~~~~~----k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
+|-|.+.... .+ .-+.|++.|-++.|.+-+..... +....++|+..
T Consensus 3 ~GwL~kk~~~-~g~~~k~WkkrwfvL~~~~L~yyk~~~~~-----------------------------~~~~~I~L~~~ 52 (96)
T cd01260 3 DGWLWKRKKP-GGFMGQKWARRWFVLKGTTLYWYRSKQDE-----------------------------KAEGLIFLSGF 52 (96)
T ss_pred eeEEEEecCC-CCccccCceeEEEEEECCEEEEECCCCCC-----------------------------ccceEEEccCC
Confidence 5666665421 23 46889999999999888755321 11235777765
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
.+....+. ...+.|.|.... ...|.|+|.+. .+.++|+.+|+.|
T Consensus 53 -~v~~~~~~---~k~~~F~I~~~~-----~~~~~f~a~s~-~e~~~Wi~ai~~~ 96 (96)
T cd01260 53 -TIESAKEV---KKKYAFKVCHPV-----YKSFYFAAETL-DDLSQWVNHLITA 96 (96)
T ss_pred -EEEEchhc---CCceEEEECCCC-----CcEEEEEeCCH-HHHHHHHHHHHhC
Confidence 33333232 234677775322 26899998664 4999999999754
No 88
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.0053 Score=65.50 Aligned_cols=83 Identities=25% Similarity=0.355 Sum_probs=63.4
Q ss_pred cccccceEEecCCChhhHHHHHHHHHhCCCEeecC----------CCCCCceEEEEeCCCC-cccccccCCCCeEeechh
Q psy2293 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLS----------SDEPLTTHVVVDDSKV-TCMPNVPCTSTYVVKARW 309 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~----------~~~~~~THlI~~~~~~-~k~~~a~~~~i~iV~~~W 309 (832)
.+|.|++|+++.- --+.-|.-+|...||.+.++ -.+..+||-||+.+.- .|+ -|..-|.|+|
T Consensus 349 slFS~f~Fyisre--Vp~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kv-----egrtYiQPQw 421 (591)
T COG5163 349 SLFSGFKFYISRE--VPGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKV-----EGRTYIQPQW 421 (591)
T ss_pred hhhhceEEEEecc--ccchHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhh-----cceeeechHH
Confidence 3799999999853 33566788999999998654 2344689999988532 222 3667789999
Q ss_pred HHHhHhcCccccccccccCCC
Q psy2293 310 FWMSIQNSECADESKYLFGKN 330 (832)
Q Consensus 310 l~~si~~g~~~~E~~Y~~~~~ 330 (832)
++|||..|.++....|.+...
T Consensus 422 ~fDsiNkG~l~~~~~Y~~G~~ 442 (591)
T COG5163 422 LFDSINKGKLACVENYCVGKR 442 (591)
T ss_pred HHhhhccccchhhhhcccccc
Confidence 999999999999999988653
No 89
>KOG0966|consensus
Probab=95.95 E-value=0.0079 Score=69.99 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=63.9
Q ss_pred ccccceEEe-cCCChhh-HHHHHHHHHhCCCEeecCCCCCCceEEEE--eCCCCcccccccCCCCeEeechhHHHhHhcC
Q psy2293 242 LFQGAKVNF-FGFSEED-EEQLQELLLSNGGKPSLSSDEPLTTHVVV--DDSKVTCMPNVPCTSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 242 ~F~g~~i~~-~g~~~~e-~~~l~~li~~~GG~~~~~~~~~~~THlI~--~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g 317 (832)
.|.|+.||+ +|.+... +..++++|.++||.+. ....+..||.|+ +..+..+...+.+.+..||.+.|+.+|++..
T Consensus 633 if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv-~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc~~~ 711 (881)
T KOG0966|consen 633 IFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIV-QNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCCKKQ 711 (881)
T ss_pred hhcCeeEEEecCCcccccHHHHHHHHHHcCCEEE-EcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHHhhh
Confidence 699999997 5777777 6889999999999999 555666888886 3333333444555699999999999999998
Q ss_pred ccccccc
Q psy2293 318 ECADESK 324 (832)
Q Consensus 318 ~~~~E~~ 324 (832)
..++..+
T Consensus 712 ~l~p~~P 718 (881)
T KOG0966|consen 712 RLLPWLP 718 (881)
T ss_pred hcccccc
Confidence 8766544
No 90
>KOG0323|consensus
Probab=95.90 E-value=0.0065 Score=70.63 Aligned_cols=100 Identities=18% Similarity=0.323 Sum_probs=79.3
Q ss_pred hhhcccccceEEecCCC----hhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccC-CCCeEeechhHHH
Q psy2293 238 YKLKLFQGAKVNFFGFS----EEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPC-TSTYVVKARWFWM 312 (832)
Q Consensus 238 ~~~~~F~g~~i~~~g~~----~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~-~~i~iV~~~Wl~~ 312 (832)
.+...+.||.+-|+|+. ..++..+-......|...+ ......+||+|....++.|...|.. ..++||++.|+|.
T Consensus 437 ~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~-~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~ 515 (635)
T KOG0323|consen 437 LRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSA-PDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWR 515 (635)
T ss_pred hhhHHhhccceeecccccCcCCcchhhhhhhhhcccceec-ccccchhhhHHhhccCcceeeccccccceeEechhHHHH
Confidence 34457999999999954 3345566667777888877 6677889999999998888777765 4599999999999
Q ss_pred hHhcCccccccccccCCCCCCCchhh
Q psy2293 313 SIQNSECADESKYLFGKNFRTPDRAA 338 (832)
Q Consensus 313 si~~g~~~~E~~Y~~~~~~~~p~~~~ 338 (832)
|+++++.++|..|......+.+....
T Consensus 516 ~~e~w~~v~ek~~~l~~~~~~~~~~~ 541 (635)
T KOG0323|consen 516 SLEKWGKVEEKLEPLDDDQRAAIRRE 541 (635)
T ss_pred HHHHhcchhcccccccccccchhccc
Confidence 99999999999999887655444433
No 91
>KOG3522|consensus
Probab=95.89 E-value=0.033 Score=65.36 Aligned_cols=104 Identities=13% Similarity=-0.020 Sum_probs=70.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q psy2293 393 DVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLE 472 (832)
Q Consensus 393 ~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~ 472 (832)
..+..++..+-+++.-+++.+..|++.=+.+ .+-.++.+... .+...-+++..|---......|-.+-..+-.++
T Consensus 6 ~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l--~~~~~~~eif~---~i~ell~~he~fl~~l~s~~~~w~~qq~vga~~ 80 (925)
T KOG3522|consen 6 LQLIDREQSYVESLHTGVDRYVQPLKERKVL--IDPRDVDEIFQ---NIPELLEIHEDFLEQLCSRDQQWDEQQKVGASF 80 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccc--cCCchHHHHHH---hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445667788889999999999998872222 22223333211 233334677788766666777777777788888
Q ss_pred hcCCCCCchHHHHHHhHHHHh--hhhhHHHh
Q psy2293 473 QNYSDSVSIGEVFVKHCTAFK--KVYPPFIN 501 (832)
Q Consensus 473 ~~~~~~~~Ig~vfl~~~~~f~--~~Y~~Y~~ 501 (832)
..|.....|+++|.+++.+|. +.|..|.+
T Consensus 81 v~~fSk~~v~~~Y~~y~nn~~~A~~~l~~~~ 111 (925)
T KOG3522|consen 81 VYSFSKTAVLAAYSKYVNNFKRAKCALRNKK 111 (925)
T ss_pred HHhhhHHHHHHHHHHHHhchhHHHHHHHHhc
Confidence 788788889999999888772 45666666
No 92
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.011 Score=68.70 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=64.2
Q ss_pred cccccceEEecC-CChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHh
Q psy2293 241 KLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMS 313 (832)
Q Consensus 241 ~~F~g~~i~~~g-~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~s 313 (832)
.+|.|.+|++|| +..--|...+.+++..||+++ ...+.++..||+++..|.|+..|.+.||.|.+-++|..-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~-~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVS-GSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEe-ceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHHh
Confidence 679999999999 666789999999999999999 666778888888888889999999999999999887653
No 93
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=95.80 E-value=0.13 Score=47.59 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=76.2
Q ss_pred CeEEeeeeEEEeccc----ccCCccEEEEEEeCCeEEEEEe-cCCCcccccCCCCCcccccccccccCCCCCCcceeEEe
Q psy2293 624 RSFVLKCDVIELSNM----LSHRGDCITLFLFTDVVEVCKK-RSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKL 698 (832)
Q Consensus 624 R~li~~g~l~~~~~~----~~~k~~~~~lfLF~D~Lli~k~-k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~ 698 (832)
..|+..+.+.++.-. ..+|.-+..+|.|...+++.-+ ..+... |-+..++... + ....++++..+
T Consensus 25 gdLL~h~~v~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~Kk--Kl~~~~r~~~------~--~e~dp~rfr~m 94 (160)
T cd01255 25 GDLLYHGGVEWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKK--KLMGVSRKNA------T--NEVDPFRFRVL 94 (160)
T ss_pred HHhhhhcceeeecCChhhccccCCceEEEEEecceEEEEEcCcchhhh--cccccccccc------c--cccCceeEEEe
Confidence 345555666666421 1234568899999997766543 322211 1111111110 1 12345888889
Q ss_pred ecccccceEeeecCCCCcccCceEEEEecCCc--cccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 699 LSMTSIKKVYNVEDEAHDNDRQIFALRCRGSD--EVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 699 i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~--~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
+|++.+ .|...... +.+....|.|.+.... ...+.+|.|+|++.| -|+.+++.++..+.+.
T Consensus 95 iP~~al-QVR~~n~a-d~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E-~k~~flK~Irsilre~ 157 (160)
T cd01255 95 IPVTAL-QVRASSAA-DMESNFLWELIHLKSELEGRPEKVFVLCCSTAE-SRNAFLKTIRSILRES 157 (160)
T ss_pred eceeee-eeecCCCc-CcccceEEEEEeecccccCCCcceEEEecCCHH-HHHHHHHHHHHHHHHH
Confidence 999988 44433222 2345678888886442 356899999987666 9999999998877654
No 94
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=95.74 E-value=0.11 Score=46.46 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=35.8
Q ss_pred eEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 695 HIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 695 ~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
.+..|+|.++..|....+. ..++.|.|... +..|.|.|.+ +.|++.|+++|..
T Consensus 48 p~~vI~L~~c~~v~~~~d~---k~~~~f~i~t~------dr~f~l~aes-e~E~~~Wi~~i~~ 100 (101)
T cd01257 48 PKRVIPLESCFNINKRADA---KHRHLIALYTR------DEYFAVAAEN-EAEQDSWYQALLE 100 (101)
T ss_pred ceEEEEccceEEEeecccc---ccCeEEEEEeC------CceEEEEeCC-HHHHHHHHHHHhh
Confidence 3456788888555544333 22467777653 3489999865 5599999999864
No 95
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.70 E-value=0.096 Score=47.07 Aligned_cols=79 Identities=8% Similarity=-0.026 Sum_probs=49.9
Q ss_pred ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceE
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIF 722 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F 722 (832)
-+.|++.|-++-+|.-.+.... . .+....|+|+.+..|.+..+. .+..+.|
T Consensus 24 WkrRWFvL~~~~~L~y~~d~~~-------~--------------------~~p~G~IdL~~~~~V~~~~~~--~~~~~~f 74 (104)
T cd01236 24 WQRRWFILYDHGLLTYALDEMP-------T--------------------TLPQGTIDMNQCTDVVDAEAR--TGQKFSI 74 (104)
T ss_pred ccceEEEEeCCCEEEEeeCCCC-------C--------------------cccceEEEccceEEEeecccc--cCCccEE
Confidence 4788999988877776543211 0 111235677776555544332 2234677
Q ss_pred EEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 723 ALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 723 ~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
.|... ++.|.|.|.+ +.|++.|+++|..
T Consensus 75 ~I~tp------~R~f~l~Aet-e~E~~~Wi~~l~~ 102 (104)
T cd01236 75 CILTP------DKEHFIKAET-KEEISWWLNMLMV 102 (104)
T ss_pred EEECC------CceEEEEeCC-HHHHHHHHHHHHh
Confidence 77544 4599999866 5599999999864
No 96
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.66 E-value=0.095 Score=45.81 Aligned_cols=92 Identities=11% Similarity=0.138 Sum_probs=53.3
Q ss_pred eeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEe
Q psy2293 629 KCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVY 708 (832)
Q Consensus 629 ~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~ 708 (832)
+|.|.+.+....+..+.|++.|-++.|.+-+...... ......++|... .+.
T Consensus 2 ~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~---------------------------~~~~~~i~l~~~-~v~ 53 (94)
T cd01250 2 QGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYD---------------------------NAHVKEIDLRRC-TVR 53 (94)
T ss_pred cceEEEECCCcCCCceEEEEEEeCCeEEEEcCCcccc---------------------------cccceEEeccce-EEe
Confidence 4666554432234468899999888888865433210 111123555543 222
Q ss_pred eecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 709 NVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 709 ~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
...+. ....+.|.|.... ..|.|+|.+.+ +.+.|+.+|+.
T Consensus 54 ~~~~~--~~~~~~f~i~~~~------~~~~f~a~s~~-~~~~Wi~al~~ 93 (94)
T cd01250 54 HNGKQ--PDRRFCFEVISPT------KTWHFQADSEE-ERDDWISAIQE 93 (94)
T ss_pred cCccc--cCCceEEEEEcCC------cEEEEECCCHH-HHHHHHHHHhc
Confidence 22222 1134677775432 58999986655 99999999964
No 97
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=95.62 E-value=0.13 Score=45.16 Aligned_cols=89 Identities=7% Similarity=0.050 Sum_probs=55.9
Q ss_pred eeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEe
Q psy2293 629 KCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVY 708 (832)
Q Consensus 629 ~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~ 708 (832)
+|-|.+.+. .-+.-+.|+++|=+..|.+-+.+.... ......|+|+....+.
T Consensus 2 ~G~L~K~~~-~~k~Wk~RwFvL~~g~L~Yyk~~~~~~---------------------------~~~~G~I~L~~~~i~~ 53 (91)
T cd01247 2 NGVLSKWTN-YINGWQDRYFVLKEGNLSYYKSEAEKS---------------------------HGCRGSIFLKKAIIAA 53 (91)
T ss_pred ceEEEEecc-ccCCCceEEEEEECCEEEEEecCccCc---------------------------CCCcEEEECcccEEEc
Confidence 355555442 123468899999888888887654320 1223457777652221
Q ss_pred eecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 709 NVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 709 ~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
+ +...+.|.|...+ .+.|.|.|.+ +.|++.|+++|.+
T Consensus 54 ~------~~~~~~F~i~~~~-----~r~~~L~A~s-~~e~~~Wi~al~~ 90 (91)
T cd01247 54 H------EFDENRFDISVNE-----NVVWYLRAEN-SQSRLLWMDSVVR 90 (91)
T ss_pred C------CCCCCEEEEEeCC-----CeEEEEEeCC-HHHHHHHHHHHhh
Confidence 1 2235788886532 3689999865 5599999999975
No 98
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.47 E-value=0.076 Score=47.14 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=36.4
Q ss_pred EeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 697 KLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 697 ~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
..++|..+ .|..+.++. -+-++.|+|..... ...|.++|++ + |++.||+.|.+
T Consensus 45 gli~l~~~-~V~~v~ds~-~~r~~cFel~~~~~----~~~y~~~a~~-~-er~~Wi~~l~~ 97 (98)
T cd01245 45 GLIDLSDA-YLYPVHDSL-FGRPNCFQIVERAL----PTVYYSCRSS-E-ERDKWIESLQA 97 (98)
T ss_pred ceeecccc-EEEEccccc-cCCCeEEEEecCCC----CeEEEEeCCH-H-HHHHHHHHHhc
Confidence 35677777 677766642 12358999976654 2477777644 5 99999999975
No 99
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=95.21 E-value=0.19 Score=44.76 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=52.1
Q ss_pred eeeEEEecccccCCccEEEEEEeCC--eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 629 KCDVIELSNMLSHRGDCITLFLFTD--VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 629 ~g~l~~~~~~~~~k~~~~~lfLF~D--~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
+|-|.+.+. ..+.-+.|++.|-.+ .|.+-+.... .+....|+|..+..
T Consensus 2 ~G~L~K~g~-~~k~WkkRwFvL~~~~~~L~Yy~~~~~-----------------------------~~~~g~I~L~~~~~ 51 (101)
T cd01235 2 EGYLYKRGA-LLKGWKPRWFVLDPDKHQLRYYDDFED-----------------------------TAEKGCIDLAEVKS 51 (101)
T ss_pred eEEEEEcCC-CCCCccceEEEEECCCCEEEEecCCCC-----------------------------CccceEEEcceeEE
Confidence 566666542 234468899999854 6666653321 11223466666533
Q ss_pred EeeecCCC--Cc--ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 707 VYNVEDEA--HD--NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 707 v~~i~d~~--~~--~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
+....+.. .. .....|.+.. + .+.|.|.|.+.+ |++.|+++|+.+|
T Consensus 52 v~~~~~~~~~~~~~~~~~~f~i~t--~----~r~~~~~a~s~~-e~~~Wi~ai~~~i 101 (101)
T cd01235 52 VNLAQPGMGAPKHTSRKGFFDLKT--S----KRTYNFLAENIN-EAQRWKEKIQQCI 101 (101)
T ss_pred EeecCCCCCCCCCCCCceEEEEEe--C----CceEEEECCCHH-HHHHHHHHHHhhC
Confidence 33222110 00 1123455432 2 458999986655 9999999998754
No 100
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.02 E-value=0.18 Score=44.60 Aligned_cols=51 Identities=8% Similarity=0.210 Sum_probs=33.4
Q ss_pred EEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 696 IKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 696 ~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
...|+|.....+.+ . +...+.|.|... .+.|.|+|.+ +.|++.|+++|+.+
T Consensus 43 ~G~I~L~~~~~~~~--~---~~~~~~F~i~t~------~r~y~l~A~s-~~e~~~Wi~al~~~ 93 (95)
T cd01265 43 LGRVDLSGAAFTYD--P---REEKGRFEIHSN------NEVIALKASS-DKQMNYWLQALQSK 93 (95)
T ss_pred cceEECCccEEEcC--C---CCCCCEEEEEcC------CcEEEEECCC-HHHHHHHHHHHHhh
Confidence 34567766522222 1 112578988643 4589999865 55999999999865
No 101
>KOG1729|consensus
Probab=94.97 E-value=0.0066 Score=64.28 Aligned_cols=111 Identities=8% Similarity=0.130 Sum_probs=68.8
Q ss_pred CCccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCccee
Q psy2293 616 PPQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKH 695 (832)
Q Consensus 616 ~~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~ 695 (832)
..++..++|.|+++|.++.... ++.+.+.+|||+|.+.++....... .|.-
T Consensus 36 ~~~~~~~grv~~~q~~~~k~~r---k~~q~r~~~l~~D~~~~~~~~~~~~--------------------------~~~~ 86 (288)
T KOG1729|consen 36 GHPCRECGRVLCRQGTLVKRCR---KKLQSRSFFLFNDILVYGNIVSDNK--------------------------LLNK 86 (288)
T ss_pred cCcccccchhhhhhhhhHHHHh---cccccccccccccchhhcccccCHH--------------------------HHhH
Confidence 4567889999999999966542 5578999999999999998765431 1333
Q ss_pred EEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 696 IKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 696 ~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
...+|+..+ .+....+. +...+...+... ...+.+.+++ +.||..|+..|.+++......
T Consensus 87 ~~~~~le~~-~~~~~~~~--~~~~~~~~~~S~------~ks~~~~~as-~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 87 NHIIPLEGV-SQESRSDN--ERVRNGWQILSA------LKSFTVLAAS-QTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred Hhcccccch-hhhhhccc--cccccchhhhcc------cchhhhhcch-hhhhHHHHHHHHHHHHHHHHH
Confidence 334455333 11122122 222233333221 3345555544 559999999999988766543
No 102
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=94.67 E-value=1.1 Score=52.31 Aligned_cols=55 Identities=13% Similarity=0.331 Sum_probs=39.4
Q ss_pred cccccceEeeecCCC-CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 700 SMTSIKKVYNVEDEA-HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 700 ~L~~i~~v~~i~d~~-~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
|++++..+..+.... ..+..+.|.+.+.+. +.+.|+|.+.+ +++.||.+|++++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 435 PFSDLEDVFPVPSKYTGSNAAHVFAVAFKTG-----RRLLFQARSDP-ERDAWMQKIQSVLG 490 (496)
T ss_pred chhhhcccccccHHhhCCCCCcEEEEEecCC-----cEEEEecCCch-hHHHHHHHHHHhcC
Confidence 666665555554432 233578999988754 68999987755 99999999988764
No 103
>KOG2481|consensus
Probab=94.35 E-value=0.037 Score=61.51 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=55.9
Q ss_pred ccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeec----------CcceeEEEeccCC-ChhhHHHhhcCCCeeeHH
Q psy2293 145 CHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEM----------NYQVTHLIANCVS-GEKYKYAMGFRVPVLTKE 213 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l----------~~~~THLIa~~~~-~~Ky~~A~~~~i~IV~~~ 213 (832)
...|+|+++.++.=-+ |+.|.-+|.+.||.+.-+- +..+||=|+..++ +.+|. |-.-|.|+
T Consensus 325 kslF~glkFfl~reVP---resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v~-----gR~YvQPQ 396 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVP---RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSVI-----GRTYVQPQ 396 (570)
T ss_pred HHHhhcceeeeeccCc---hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccceee-----eeeeecch
Confidence 4579999999964333 4578888999999998762 2467998887763 33442 45678999
Q ss_pred HHHHHHHcCCcCCC
Q psy2293 214 FVLSAWEKRYDVNF 227 (832)
Q Consensus 214 Wv~dc~~~~~~~~~ 227 (832)
||+||+..|..+..
T Consensus 397 WvfDsvNar~llpt 410 (570)
T KOG2481|consen 397 WVFDSVNARLLLPT 410 (570)
T ss_pred hhhhhccchhhccH
Confidence 99999999876554
No 104
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.24 E-value=0.53 Score=42.23 Aligned_cols=34 Identities=12% Similarity=-0.069 Sum_probs=22.8
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCC-eEEEEEec
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTD-VVEVCKKR 661 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D-~Lli~k~k 661 (832)
+++|.|.+.+. ..+..+.||+.|-+| .|++-+.+
T Consensus 2 ~k~G~L~K~g~-~~~~Wk~R~f~L~~~~~l~~yk~~ 36 (102)
T cd01241 2 VKEGWLHKRGE-YIKTWRPRYFLLKSDGSFIGYKEK 36 (102)
T ss_pred cEEEEEEeecC-CCCCCeeEEEEEeCCCeEEEEecC
Confidence 57888877653 234468899999844 56666544
No 105
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=94.12 E-value=0.4 Score=43.46 Aligned_cols=23 Identities=4% Similarity=0.233 Sum_probs=19.3
Q ss_pred ceEEEEEecCChHHHHHHHHHHHH
Q psy2293 734 ETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 734 ~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
++.|.|.|.+.+ |++.|+++|++
T Consensus 84 ~r~y~l~A~s~e-e~~~Wi~~I~~ 106 (108)
T cd01266 84 VRDLYLVAKNEE-EMTLWVNCICK 106 (108)
T ss_pred CccEEEEECCHH-HHHHHHHHHHh
Confidence 568999987655 99999999975
No 106
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.72 E-value=0.63 Score=43.11 Aligned_cols=103 Identities=13% Similarity=0.022 Sum_probs=52.6
Q ss_pred eeeeEEEecccc-cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 628 LKCDVIELSNML-SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 628 ~~g~l~~~~~~~-~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
++|.|....+.- .+.-+.|++.|-..+|-+-+...+. ..+.| ...|+|.++ .
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~--~~~~P------------------------lg~I~L~~c-~ 55 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDE--KRKGP------------------------TGLIDLSTC-T 55 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCcc--ccCCc------------------------eEEEEhhhC-c
Confidence 456666544321 1224678888885555555433221 11222 234566654 2
Q ss_pred EeeecCCCCcc--cCceEEEEecCCc-------------cccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 707 VYNVEDEAHDN--DRQIFALRCRGSD-------------EVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 707 v~~i~d~~~~~--~~~~F~l~~~~~~-------------~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
+..+.+...+. -+++|.|.+..+. ...+..+.+-++.++.|++.|+++|.+
T Consensus 56 ~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 56 SSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred ccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 33332221012 2578888665332 122344444444667799999999975
No 107
>KOG4362|consensus
Probab=93.38 E-value=0.089 Score=61.42 Aligned_cols=82 Identities=10% Similarity=0.133 Sum_probs=68.5
Q ss_pred cceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeC------CCCcccccccCCCCeEeechhHHHhHhcCc
Q psy2293 245 GAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD------SKVTCMPNVPCTSTYVVKARWFWMSIQNSE 318 (832)
Q Consensus 245 g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~------~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~ 318 (832)
-++.+.+|...+++..+...... +.+ ......+||+|+.. .++.|+..+...|.+|++..|+-.|++.+.
T Consensus 478 k~~~~~s~l~p~ek~~v~~~a~~---t~~-k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~ 553 (684)
T KOG4362|consen 478 KLVLLVSGLTPSEKQLVEKFAVD---TIS-KFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRK 553 (684)
T ss_pred ceeeeeccCCcchHHHHHHHHHH---HHh-hccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcC
Confidence 46788999999999999988877 566 66778899999976 233566667778999999999999999999
Q ss_pred cccccccccCCC
Q psy2293 319 CADESKYLFGKN 330 (832)
Q Consensus 319 ~~~E~~Y~~~~~ 330 (832)
+++|..|-+.-.
T Consensus 554 ~~~eepfEl~~d 565 (684)
T KOG4362|consen 554 WVSEEPFELQID 565 (684)
T ss_pred CCCCCCeeEeec
Confidence 999999977554
No 108
>KOG0323|consensus
Probab=93.30 E-value=0.04 Score=64.29 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=67.0
Q ss_pred ccCCCceEEEEcCCCC---hHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcC-CCeeeHHHHHHHHH
Q psy2293 145 CHSMQNIVICITGFRN---KQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFR-VPVLTKEFVLSAWE 220 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~---~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~-i~IV~~~Wv~dc~~ 220 (832)
...|.|+.+.|+|+.+ ..++..+......+|.....+++..+||+|+.+.++.|-..|...+ +.||.+.|+..|.+
T Consensus 439 ~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e 518 (635)
T KOG0323|consen 439 TKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLE 518 (635)
T ss_pred hHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhHHHHHHH
Confidence 3468899999988662 2234567778889999999999999999999999999999999665 99999999999987
Q ss_pred cCCcC
Q psy2293 221 KRYDV 225 (832)
Q Consensus 221 ~~~~~ 225 (832)
+-...
T Consensus 519 ~w~~v 523 (635)
T KOG0323|consen 519 KWGKV 523 (635)
T ss_pred Hhcch
Confidence 65433
No 109
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.78 E-value=1.4 Score=39.37 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=47.5
Q ss_pred ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceE
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIF 722 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F 722 (832)
-+.+++.|-...|.+-+........ ......+++... .+.+.+.. ....+.|
T Consensus 23 Wk~r~~vL~~~~L~~ykd~~~~~~~-------------------------~~~~~~i~l~~~--~i~~~~~~-~k~~~~F 74 (104)
T cd01253 23 WDNVYGVLCGQSLSFYKDEKMAAEN-------------------------VHGEPPVDLTGA--QCEVASDY-TKKKHVF 74 (104)
T ss_pred cceEEEEEeCCEEEEEecCcccccC-------------------------CCCCCcEeccCC--EEEecCCc-ccCceEE
Confidence 5789999999999888744311000 000012333322 12222210 2235788
Q ss_pred EEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 723 ALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 723 ~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
.|.... ...|.|+|.+.+ +...|+.+|+.
T Consensus 75 ~l~~~~-----~~~~~f~a~s~e-~~~~Wi~aL~~ 103 (104)
T cd01253 75 RLRLPD-----GAEFLFQAPDEE-EMSSWVRALKS 103 (104)
T ss_pred EEEecC-----CCEEEEECCCHH-HHHHHHHHHhc
Confidence 887542 368999987655 99999999964
No 110
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=92.64 E-value=0.085 Score=56.61 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=55.3
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEE-----------eecCcceeEEEeccC-CChhhHHHhhcCCCeeeHH
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLR-----------KEMNYQVTHLIANCV-SGEKYKYAMGFRVPVLTKE 213 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~-----------~~l~~~~THLIa~~~-~~~Ky~~A~~~~i~IV~~~ 213 (832)
.+|+|+++.++.=-+.+ .|.-+|.+.||.+. .+.+..+||-|+..+ -..||. |..-+.|+
T Consensus 349 slFS~f~FyisreVp~d---sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kve-----grtYiQPQ 420 (591)
T COG5163 349 SLFSGFKFYISREVPGD---SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVE-----GRTYIQPQ 420 (591)
T ss_pred hhhhceEEEEeccccch---HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhhc-----ceeeechH
Confidence 47899999997654444 67778999999884 344578999998766 444553 66778999
Q ss_pred HHHHHHHcCCcCC
Q psy2293 214 FVLSAWEKRYDVN 226 (832)
Q Consensus 214 Wv~dc~~~~~~~~ 226 (832)
||+||+.+|....
T Consensus 421 w~fDsiNkG~l~~ 433 (591)
T COG5163 421 WLFDSINKGKLAC 433 (591)
T ss_pred HHHhhhccccchh
Confidence 9999999987543
No 111
>COG5275 BRCT domain type II [General function prediction only]
Probab=92.50 E-value=0.17 Score=50.15 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=63.0
Q ss_pred cccccceEEecCCCh-hhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCC-cccccccCCCCeEeechhHHHhHhc
Q psy2293 241 KLFQGAKVNFFGFSE-EDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKV-TCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~-~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~-~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
-.+.|..|.|+|.-. -.|..-..++..+||.++ ..-..++|.||.++..| .|++.++..+|+.++.+=|..-|.-
T Consensus 155 ~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT-~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~LI~~ 231 (276)
T COG5275 155 ECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVT-AVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSLIKD 231 (276)
T ss_pred ccccccEEEEecccccccchhHHHHHHHhCCeee-cccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHHHhc
Confidence 358899999999765 678899999999999999 67788899999988655 7888889999999988877766654
No 112
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.15 E-value=1.9 Score=37.67 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=64.9
Q ss_pred EeeeeEEEecccc-cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccc
Q psy2293 627 VLKCDVIELSNML-SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIK 705 (832)
Q Consensus 627 i~~g~l~~~~~~~-~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~ 705 (832)
|+.|-+....-+. .|-.++++++|-+++|-.-|-.... . .+.++||.++
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeK-----E------------------------~kyilpLdnL- 51 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEK-----E------------------------KKYMLPLDGL- 51 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecceeeeecccccc-----c------------------------ccceeecccc-
Confidence 5667765543222 3446789999999999887744321 1 1236899998
Q ss_pred eEeeecCCCCcccCceEEEEecCCcc--ccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 706 KVYNVEDEAHDNDRQIFALRCRGSDE--VIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 706 ~v~~i~d~~~~~~~~~F~l~~~~~~~--~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
.+.+++++- ..-++.|.|....... +....+.+.|.+.+ +-+.|...+-+|
T Consensus 52 k~Rdve~gf-~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e-~vdswkasflra 104 (110)
T cd01256 52 KLRDIEGGF-MSRNHKFALFYPDGRNVYKDYKQLELGCETLE-EVDSWKASFLRA 104 (110)
T ss_pred EEEeecccc-cCCCcEEEEEcCcccccccchheeeecCCCHH-HHHHHHHHHHhc
Confidence 678887642 2345899987654322 22356778876655 999998877553
No 113
>KOG2093|consensus
Probab=90.88 E-value=0.15 Score=60.19 Aligned_cols=173 Identities=16% Similarity=0.240 Sum_probs=103.8
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEE-eecCcceeEEEeccCCChhhHHHhhcCCC-eeeHHHHHHHHHcCC
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLR-KEMNYQVTHLIANCVSGEKYKYAMGFRVP-VLTKEFVLSAWEKRY 223 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~-~~l~~~~THLIa~~~~~~Ky~~A~~~~i~-IV~~~Wv~dc~~~~~ 223 (832)
..|.|+-+|.-|-.... ..++...-..+||.+. .+....++|+||......+.. .+.+| ..+++|+-+|.+.++
T Consensus 46 s~fs~is~~~ngs~~e~-~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk---~~~~~~~~~~e~iie~~~~~~ 121 (1016)
T KOG2093|consen 46 SSFSGISISVNGSTDES-ANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVK---GFTIPKHISIEWIIECCENGM 121 (1016)
T ss_pred ceeeeeeeccCCccccc-hHHHhhhhhhcccccccccccccceeeecccchHHHhc---cccchhhhcHHHHHHHHhccC
Confidence 47899999997766433 2456666778899887 666789999999876433322 34443 458999999999997
Q ss_pred cCCCCCC---Chh-------------h-----hhhhhhcccccceEEecCCChhhHHHHH-HHHHhCCCEeecC-CCCCC
Q psy2293 224 DVNFKAD---EPS-------------F-----MNQYKLKLFQGAKVNFFGFSEEDEEQLQ-ELLLSNGGKPSLS-SDEPL 280 (832)
Q Consensus 224 ~~~~~~~---~~~-------------~-----~~~~~~~~F~g~~i~~~g~~~~e~~~l~-~li~~~GG~~~~~-~~~~~ 280 (832)
...+... ... + .......+|.+++|.+.|+.+.+.-.+. ....-+++..... .....
T Consensus 122 ~~~~~~~~~~t~~~h~q~~~~~~~~~~~~D~q~~~~~~ki~~~n~ikinG~~E~~~~dlepp~gv~~d~~~~~~~~~rd~ 201 (1016)
T KOG2093|consen 122 DVGYYPYQLYTGQSHEQAQLAFPVTSFPKDQQISSQSSKIFKNNVIKINGYNEPESLDLEPPSGVLHDKAEDDSTSARDH 201 (1016)
T ss_pred ccccccceeeccchhcccccCCCcccCCccccccccchhccccceeeecCCCCccccccCCCcccccchhhhhhhhHHHH
Confidence 6654210 000 0 0011245799999999999977664444 1111123332201 11223
Q ss_pred ceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcCccccccccc
Q psy2293 281 TTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYL 326 (832)
Q Consensus 281 ~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~ 326 (832)
++|.+... -+....--++..++|.|+.+.+.....-.-..|.
T Consensus 202 v~~~l~~~----~l~n~~f~n~~~~sP~~~~~k~~~a~~~~~~~~S 243 (1016)
T KOG2093|consen 202 VDHELAGN----LLLNKRFVNIENTSPDWIVDKELTAHTGTGQNYS 243 (1016)
T ss_pred HHHHhccc----cccccccceeeecCchhhhhhhhhhccCCccccc
Confidence 45655433 1111113577889999999998774443333443
No 114
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.04 E-value=6 Score=36.42 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=52.4
Q ss_pred ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcc-eeEEeecccccceEeeecCCCCcccCce
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTY-KHIKLLSMTSIKKVYNVEDEAHDNDRQI 721 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~y-k~~~~i~L~~i~~v~~i~d~~~~~~~~~ 721 (832)
.+.+|+.|-...|.+-|-.... .. ...+ .....++|......+.. +. ..-.+.
T Consensus 26 Wk~~y~vL~g~~L~~yKDe~~~-~~----------------------~~~~~~~~~~Isi~~a~~~ia~-dy--~Kr~~V 79 (117)
T cd01230 26 WKMFYGILRGLVLYLQKDEHKP-GK----------------------SLSETELKNAISIHHALATRAS-DY--SKKPHV 79 (117)
T ss_pred ceEEEEEEECCEEEEEccCccc-cc----------------------ccccccccceEEeccceeEeec-cc--cCCCcE
Confidence 5789999999999887755321 00 0001 11123444443111111 11 223577
Q ss_pred EEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 722 FALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 722 F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
|.|.... ...|.|+|.+.+ |.+.|+.+|.-+.+..
T Consensus 80 F~L~~~~-----g~~~lfqA~~~e-e~~~Wi~~I~~~~~~~ 114 (117)
T cd01230 80 FRLRTAD-----WREFLFQTSSLK-ELQSWIERINVVAAAF 114 (117)
T ss_pred EEEEcCC-----CCEEEEECCCHH-HHHHHHHHHHHHHHhc
Confidence 7776543 358999987655 9999999998877654
No 115
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.54 E-value=2.9 Score=37.51 Aligned_cols=39 Identities=5% Similarity=-0.095 Sum_probs=29.0
Q ss_pred ceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 720 QIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 720 ~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
..|.|.+..+.+.....|.|.|.+ |.++.+||++++-|.
T Consensus 65 ~kf~I~l~~ps~~~~r~y~l~cds-Eeqya~Wmaa~rlas 103 (106)
T cd01237 65 QKFHIKLLIPTAEGMNEVWLRCDN-EKQYAKWMAACRLAS 103 (106)
T ss_pred cceEEEEecCCccCCeEEEEECCC-HHHHHHHHHHHHHhh
Confidence 457777766554556789999865 559999999987653
No 116
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=88.38 E-value=16 Score=32.89 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=59.5
Q ss_pred ccccCCCeEEeeeeEEEecccccCCccEEEEEEeCC-eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeE
Q psy2293 618 QLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTD-VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHI 696 (832)
Q Consensus 618 ~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D-~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~ 696 (832)
.++.++..++++|.|.+..+- -.+.|+++|=+. .|++..+... ..+
T Consensus 5 ~fl~~ge~Il~~g~v~K~kgl---~~kkR~liLTd~PrL~Yvdp~~~------------------------------~~K 51 (104)
T PF14593_consen 5 RFLNPGELILKQGYVKKRKGL---FAKKRQLILTDGPRLFYVDPKKM------------------------------VLK 51 (104)
T ss_dssp GGTT-T--EEEEEEEEEEETT---EEEEEEEEEETTTEEEEEETTTT------------------------------EEE
T ss_pred HhhcCCCeEEEEEEEEEeece---EEEEEEEEEccCCEEEEEECCCC------------------------------eEC
Confidence 356678899999999876421 146777777777 7888876542 223
Q ss_pred EeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 697 KLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 697 ~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
.-+|++....+ ...+. ..|.|... .+.|.|... +..-..|.++|......+.
T Consensus 52 GeI~~~~~l~v-~~k~~------~~F~I~tp------~RtY~l~d~--~~~A~~W~~~I~~~~~~~~ 103 (104)
T PF14593_consen 52 GEIPWSKELSV-EVKSF------KTFFIHTP------KRTYYLEDP--EGNAQQWVEAIEEVKKQYY 103 (104)
T ss_dssp EEE--STT-EE-EECSS------SEEEEEET------TEEEEEE-T--TS-HHHHHHHHHHHHHHHH
T ss_pred cEEecCCceEE-EEccC------CEEEEECC------CcEEEEECC--CCCHHHHHHHHHHHHHHhc
Confidence 55777754222 23333 67888654 458998853 3367889999998877653
No 117
>KOG2059|consensus
Probab=88.33 E-value=4.4 Score=47.43 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=65.1
Q ss_pred ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceE
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIF 722 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F 722 (832)
-+.||+-|=+..|.+.|-.... -...|||++|+.|..+++.+ -+.+|.|
T Consensus 586 FKKryf~LT~~~Ls~~Ksp~~q------------------------------~~~~Ipl~nI~avEklee~s-F~~knv~ 634 (800)
T KOG2059|consen 586 FKKRYFRLTTEELSYAKSPGKQ------------------------------PIYTIPLSNIRAVEKLEEKS-FKMKNVF 634 (800)
T ss_pred hhheEEEeccceeEEecCCccC------------------------------cccceeHHHHHHHHHhhhhc-cCCCceE
Confidence 3789999999999999855421 22358999999898888764 3457999
Q ss_pred EEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 723 ALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 723 ~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
++++..+ ...++|.. -.|-+.|+++|++.....+.+
T Consensus 635 qVV~~dr------tly~Q~~n-~vEandWldaL~kvs~~N~~r 670 (800)
T KOG2059|consen 635 QVVHTDR------TLYVQAKN-CVEANDWLDALRKVSCCNQNR 670 (800)
T ss_pred EEEecCc------ceeEecCC-chHHHHHHHHHHHHhccCcch
Confidence 9988753 78889865 449999999999977654433
No 118
>KOG0521|consensus
Probab=87.26 E-value=14 Score=45.18 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=80.4
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q psy2293 392 SDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYL 471 (832)
Q Consensus 392 ~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~ 471 (832)
...+.+...|-...+.++...-..|+...+.+...+..+.... ...+++.+ -+..+=.-+.++..+|..+...+...
T Consensus 30 ~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~--~~~~~~~~-~l~~fs~~~~e~~~~~~~L~~q~~~~ 106 (785)
T KOG0521|consen 30 AGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLG--QDEEVISE-TLQKFSKVLRELGTYHTELRSQLAHT 106 (785)
T ss_pred HHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc--cCchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666666666655555442211 11122221 12222234678888899888888876
Q ss_pred HhcCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc--hHHHHHHH-HHHhccccCCCCCcCCCC-hhHHh
Q psy2293 472 EQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN--SRFLAFLK-LCYMNLRDLGLPEIDKQT-LPDLL 547 (832)
Q Consensus 472 ~~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~--~~F~~fl~-~~~~~~~~~~~~~~~~l~-L~slL 547 (832)
+........=+|+..- ....+.+..=+..|+.++.-+.++.++ +.+...+. .... ...|-.+. ++-++
T Consensus 107 ~~~~l~~f~k~dl~~v--~~~kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~~l~~------~r~~f~~~~~~y~~ 178 (785)
T KOG0521|consen 107 LSLPLSQFVKGDLHEV--KELKKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEEELAA------ARRKFQLTALDYVL 178 (785)
T ss_pred HhhhHHHHHHHHHHHh--hhhhHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 6543211111222211 112344444466667776666665444 23322222 1111 11111222 22233
Q ss_pred hhHHHHHhhHHHHHHHHHhhCCC
Q psy2293 548 IRPVQRLGSISLLLNDILKNTSK 570 (832)
Q Consensus 548 i~PvQRi~rY~LLL~~llk~t~~ 570 (832)
..=+....+-..+|+.++.....
T Consensus 179 ~ln~~q~kk~~~~le~~l~~~~a 201 (785)
T KOG0521|consen 179 ALNVLQAKKQFEILETLLGFMHA 201 (785)
T ss_pred hhhhhhcccchHHHHHHHHHHHh
Confidence 33344555556677777775443
No 119
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=85.52 E-value=9.7 Score=34.70 Aligned_cols=32 Identities=13% Similarity=-0.062 Sum_probs=21.1
Q ss_pred eeeeEEEecccccCC-ccEEEEEEe-CCeEEEEEe
Q psy2293 628 LKCDVIELSNMLSHR-GDCITLFLF-TDVVEVCKK 660 (832)
Q Consensus 628 ~~g~l~~~~~~~~~k-~~~~~lfLF-~D~Lli~k~ 660 (832)
++|-|.+.+.. .++ -+.|++.|- +-+|.+-|.
T Consensus 1 k~G~l~K~~~~-~~kgWk~RwFiL~k~~~L~YyK~ 34 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGWKKRWFILRKDGVLSYYKI 34 (112)
T ss_dssp EEEEEEE--TT-S-S--EEEEEEEE-TTEEEEESS
T ss_pred CCceEEEecCC-CCcCccccEEEEEeCCEEEEeec
Confidence 36777776642 233 489999999 888888876
No 120
>PF15409 PH_8: Pleckstrin homology domain
Probab=83.98 E-value=14 Score=32.10 Aligned_cols=51 Identities=8% Similarity=0.140 Sum_probs=31.6
Q ss_pred eeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 694 KHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 694 k~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
+....+|+..- ++.+... .+.|.|-. . ..+|.|.|.+ +.+.+.|+.+|+.+
T Consensus 38 ~~rGsi~v~~a--~is~~~~-----~~~I~ids--g----~~i~hLKa~s-~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 38 KLRGSIDVSLA--VISANKK-----SRRIDIDS--G----DEIWHLKAKS-QEDFQRWVSALQKA 88 (89)
T ss_pred eeEeEEEccce--EEEecCC-----CCEEEEEc--C----CeEEEEEcCC-HHHHHHHHHHHHhc
Confidence 34455665543 3344322 25555532 2 4599999866 55999999999864
No 121
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=81.19 E-value=5.3 Score=44.06 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=63.1
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC--CChhhHHHhhcCCCeeeHHHHHHHHH
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV--SGEKYKYAMGFRVPVLTKEFVLSAWE 220 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~--~~~Ky~~A~~~~i~IV~~~Wv~dc~~ 220 (832)
...|+.|.+++=...+ +..|++.+..-|=.|+..++..+.-|||+.. ..-|-..|...|||+|+-.=+.++++
T Consensus 294 lv~Gm~v~~~~e~~~~-~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 294 LVAGMEVVVAPEITMD-PDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred cccCcEEEEeCCccCC-HHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 6789999999866444 6789999999999999999999999999977 46688999999999999887777665
No 122
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=80.75 E-value=24 Score=40.98 Aligned_cols=101 Identities=8% Similarity=0.111 Sum_probs=54.4
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
.+.+.|.+..... ..+.+.+++.+.++.+.+.......... ..|.. ..+.++
T Consensus 376 Dv~~~G~l~k~~~--~~~wk~ry~~l~~~~l~~~~~~~~~~~~-~~~~~-------------------------~~l~~~ 427 (478)
T PTZ00267 376 DVTHGGYLYKYSS--DMRWKKRYFYIGNGQLRISLSENPENDG-VAPKS-------------------------VNLETV 427 (478)
T ss_pred CcccceEEeccCC--CcchhhheEEecCCceEEEeccccccCC-CCCcc-------------------------ccHHHh
Confidence 3456666665442 2346788999999999888553322111 11111 011111
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
..+..+.........+.|.++.... ..+.|.+.+ +.+++.|+.+|+.++
T Consensus 428 ~~v~pv~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~-~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 428 NDVFPVPEVYSQKHPNQLVLWFNNG-----QKIIAYAKT-AEDRDQWISKFQRAC 476 (478)
T ss_pred cccccccHHhcCCCCceEEEEecCC-----cEEEEecCC-hHHHHHHHHHHHHHh
Confidence 1112221000012358888866543 356666644 559999999998865
No 123
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.43 E-value=40 Score=31.01 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=28.3
Q ss_pred cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 716 DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 716 ~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
.+..+.|.|....-+.......++-.+.++.||++|+.+|....
T Consensus 76 kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~ 119 (122)
T cd01243 76 KDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELH 119 (122)
T ss_pred ccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHH
Confidence 45678999887653332232333333456779999999998654
No 124
>KOG0690|consensus
Probab=78.54 E-value=2.7 Score=44.94 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=27.2
Q ss_pred ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 717 NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 717 ~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
+-.|.|.|.+..=+. -..-+|.+.+ +.+|+.|+++|+......
T Consensus 77 PrPntFiiRcLQWTT--VIERTF~ves-~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 77 PRPNTFIIRCLQWTT--VIERTFYVES-AEERQEWIEAIQAVSNRL 119 (516)
T ss_pred CCCceEEEEeeeeee--eeeeeeecCC-HHHHHHHHHHHHHHhhhh
Confidence 345888887754322 2334556555 449999999997655433
No 125
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=76.56 E-value=21 Score=32.84 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=46.0
Q ss_pred ccEEEEEEeCCeEEEEEecCCC-cccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeee-cCCCCcccCc
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKY-VNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNV-EDEAHDNDRQ 720 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~-~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i-~d~~~~~~~~ 720 (832)
.+.+|+.|=...|.+.|..... .+..... . .....+....++|... +.++ .|- .--+|
T Consensus 26 Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~------~----------~~~~~~p~~~i~L~~a--~a~~a~dY--~Kr~~ 85 (119)
T PF15410_consen 26 WKQVYAVLQGGQLYFYKDEKSPASSTPPDI------Q----------SVENAKPDSSISLHHA--LAEIASDY--TKRKN 85 (119)
T ss_dssp EEEEEEEEETTEEEEESSHHHHCCT-BS-------------------SS--E-----EE-TT---EEEEETTB--TTCSS
T ss_pred ccEEeEEEECCEEEEEccCcccccCCcccc------c----------ccccCcceeEEEecce--EEEeCccc--ccCCe
Confidence 4788999999999998864311 0000000 0 0000112223455443 1222 121 12368
Q ss_pred eEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 721 IFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 721 ~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
.|.|.... ...|.|+|.+.+ |.+.||+.|..+.
T Consensus 86 VFrL~~~d-----g~e~Lfqa~~~~-~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 86 VFRLRTAD-----GSEYLFQASDEE-EMNEWIDAINYAA 118 (119)
T ss_dssp EEEEE-TT-----S-EEEEE-SSHH-HHHHHHHHHHHH-
T ss_pred EEEEEeCC-----CCEEEEECCCHH-HHHHHHHHHhhhc
Confidence 88887643 357999986654 9999999997653
No 126
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=73.58 E-value=22 Score=32.90 Aligned_cols=35 Identities=3% Similarity=0.042 Sum_probs=25.5
Q ss_pred ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 717 NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 717 ~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
+.++.|.|... ++.|.|.|.+ +.+++.|+++|..|
T Consensus 87 ~~~~~~~i~t~------~R~~~l~a~s-~~~~~~Wi~~i~~a 121 (121)
T cd01254 87 GLRHGLKITNS------NRSLKLKCKS-SRKLKQWMASIEDA 121 (121)
T ss_pred CCceEEEEEcC------CcEEEEEeCC-HHHHHHHHHHHHhC
Confidence 34566766543 5589999865 55999999999764
No 127
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=71.12 E-value=6.6 Score=43.37 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=65.7
Q ss_pred ccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCC--cccccccCCCCeEeechhHHHhHhc
Q psy2293 242 LFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKV--TCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 242 ~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~--~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
+-.|+.|.|+|=...+++.|.+.+...|=.|+ +..+..++-|||+.... .|...|...||++++-.=|...+..
T Consensus 294 lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~-~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~~ 369 (377)
T PRK05601 294 LVAGMEVVVAPEITMDPDIIIQAIVRAGLAYS-EKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVER 369 (377)
T ss_pred cccCcEEEEeCCccCCHHHHHHHHHHccchhh-hccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHHH
Confidence 56899999999999999999999999999999 78888899999988543 7888899999999999888887765
No 128
>PF15406 PH_6: Pleckstrin homology domain
Probab=67.85 E-value=16 Score=32.80 Aligned_cols=32 Identities=13% Similarity=0.365 Sum_probs=25.0
Q ss_pred cCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHH
Q psy2293 718 DRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELC 756 (832)
Q Consensus 718 ~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~ 756 (832)
..+.|.+...+. ..+|+|++.. ||+.|+.+|.
T Consensus 79 g~~kF~f~~~G~------khtF~A~s~a-ERD~Wv~~lk 110 (112)
T PF15406_consen 79 GSNKFHFKIKGH------KHTFEAASAA-ERDNWVAQLK 110 (112)
T ss_pred CCceEEEEeCCc------eeeeecCCHH-HhccHHHHhh
Confidence 348898887544 7889987655 9999999874
No 129
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=66.73 E-value=64 Score=28.29 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q psy2293 415 NYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKY 470 (832)
Q Consensus 415 ~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~ 470 (832)
.|++.|+.-+++|...++.....+.++.+..-++.+|-++..+ |..+|.-+.+
T Consensus 2 ef~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~m---H~~LL~~i~~ 54 (96)
T PF12210_consen 2 EFCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAM---HPQLLKYIQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5889999999999999999888888898888999999776654 6666655544
No 130
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=65.55 E-value=5.6 Score=43.26 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=49.3
Q ss_pred CCCCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC
Q psy2293 138 TRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV 194 (832)
Q Consensus 138 ~~~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~ 194 (832)
+.-.|.||.+|-++.+.+-|.+++. +..+.+.+..+||.+...++..|||+|....
T Consensus 113 ~~dsR~Y~~aFp~f~fY~dn~s~~~-khRvk~gf~~LGa~v~tfF~~~VThfiTrR~ 168 (468)
T COG5067 113 HLDSRTYCCAFPAFKFYKDNKSGKR-KHRVKEGFCELGAVVFTFFEEHVTHFITRRF 168 (468)
T ss_pred hhcchhhhcccchhhhhhcCCCHHH-HHHHHHHHHHhhhhhheeeccceEEEEEeee
Confidence 3347899999999999999998655 5679999999999999999999999999765
No 131
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=64.97 E-value=52 Score=28.77 Aligned_cols=59 Identities=17% Similarity=0.327 Sum_probs=40.6
Q ss_pred cceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 692 TYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 692 ~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
.|+.....+|.+++.|....+. .....|.|.+.. .|...|.+ ..||..++..|.+....
T Consensus 32 ~f~i~ktW~L~eL~~I~~~~~~---~~~~~F~l~~~k-------~y~W~a~s-~~Ek~~Fi~~L~k~~~~ 90 (91)
T PF15277_consen 32 SFQIGKTWDLDELKAIDGINPD---KDTPEFDLTFDK-------PYYWEASS-AKEKNTFIRSLWKLYQK 90 (91)
T ss_dssp -EEEEEEEEGGG--EEEE-SSS-----TTEEEEESSS-------EEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred cEEEeeEEehhhceeeeeecCC---CCCcCEEEEECC-------CcEEEeCC-HHHHHHHHHHHHHHhcc
Confidence 3899999999999666555433 234689998732 78888765 55999999999876543
No 132
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=57.48 E-value=16 Score=32.31 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=26.7
Q ss_pred cCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 718 DRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 718 ~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
..|.|.|...++ ..|+|.+.+++ +.+.|+.+|+.
T Consensus 73 ~~nTFvLK~~~~-----~eyI~Ea~d~~-q~~SWla~Ir~ 106 (107)
T cd01231 73 NLYTFVLKVDDN-----TDIIFEVGDEQ-QLNSWLAELRY 106 (107)
T ss_pred cccEEEEEecCC-----ceEEEEcCCHH-HHHHHHHHHhc
Confidence 358999887654 36999987655 99999999874
No 133
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=54.64 E-value=1.1e+02 Score=28.37 Aligned_cols=36 Identities=3% Similarity=-0.032 Sum_probs=26.0
Q ss_pred ceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 720 QIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 720 ~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
..+.|.+.++ .+.+.|.|.+.+ +.+.|+.+|.-.+.
T Consensus 87 ~~~si~i~t~----~R~L~l~a~s~~-~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 87 HNKSIIIVTP----DRSLDLTAPSRE-RHEIWFNALRYLLQ 122 (123)
T ss_pred cceEEEEEcC----CeEEEEEeCCHH-HHHHHHHHHHHHhh
Confidence 4455555544 568889987655 99999999987653
No 134
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=53.33 E-value=75 Score=28.55 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=24.3
Q ss_pred cCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHH
Q psy2293 718 DRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELC 756 (832)
Q Consensus 718 ~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~ 756 (832)
-...|.|..... ...++|||.+ +.++..||+++.
T Consensus 69 RRFCFei~~~~~----~~~~~lQA~S-e~~~~~Wi~A~d 102 (104)
T cd01249 69 KRFCFDVEVEEK----PGVITMQALS-EKDRRLWIEAMD 102 (104)
T ss_pred ceeeEeeeecCC----CCeEEEEecC-HHHHHHHHHhhc
Confidence 346777765543 3479999955 669999999873
No 135
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=52.66 E-value=30 Score=31.27 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=27.4
Q ss_pred cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 716 DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 716 ~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
.+.++.|.|...+. .....|-|.+ +.||++|+.+|.+-|
T Consensus 72 kDiP~IF~I~~~~~----~~~lllLA~s-~~ek~kWV~~L~~~~ 110 (112)
T cd01242 72 KEIPKIFQILYANE----ARDLLLLAPQ-TDEQNKWVSRLVKKI 110 (112)
T ss_pred ccCCeEEEEEeCCc----cceEEEEeCC-chHHHHHHHHHHHhc
Confidence 45678999988543 2344455544 559999999998765
No 136
>KOG2093|consensus
Probab=47.57 E-value=19 Score=43.55 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=67.6
Q ss_pred hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCC-CeEeechhHHHhHhcCc
Q psy2293 240 LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTS-TYVVKARWFWMSIQNSE 318 (832)
Q Consensus 240 ~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~-i~iV~~~Wl~~si~~g~ 318 (832)
...|.|.-||.-|...+....+.+.-..+||.+........++|+|++.....+. ...+ -.....+|+.+|+++|.
T Consensus 45 ~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~v---k~~~~~~~~~~e~iie~~~~~~ 121 (1016)
T KOG2093|consen 45 SSSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLV---KGFTIPKHISIEWIIECCENGM 121 (1016)
T ss_pred cceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHh---ccccchhhhcHHHHHHHHhccC
Confidence 4579999999999988888888888889999998566777899999987432222 1222 23567999999999998
Q ss_pred cccccccccCCC
Q psy2293 319 CADESKYLFGKN 330 (832)
Q Consensus 319 ~~~E~~Y~~~~~ 330 (832)
-++-.+|.....
T Consensus 122 ~~~~~~~~~~t~ 133 (1016)
T KOG2093|consen 122 DVGYYPYQLYTG 133 (1016)
T ss_pred ccccccceeecc
Confidence 888777766553
No 137
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=36.48 E-value=1.9e+02 Score=35.01 Aligned_cols=106 Identities=9% Similarity=0.059 Sum_probs=61.0
Q ss_pred EeeeeEEEecccccCC--ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 627 VLKCDVIELSNMLSHR--GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k--~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
.++|.++.++...-|. ...||++|=..+|-+.|++.... -.|. ....+..-
T Consensus 5 ~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~---~~pi------------------------rs~~id~~ 57 (719)
T PLN00188 5 VYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN---QVPI------------------------KTLLIDGN 57 (719)
T ss_pred eEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc---cccc------------------------eeeccCCC
Confidence 5789898887544444 46889999888888887765431 1111 11222222
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
..|.|.--.. -..+-.|.|.+-+.. ..+....|-|.+.| |-.+|+++|..++...
T Consensus 58 ~rVed~Gr~~-~~g~~~yvl~~Yn~~-~~~~~~~~~a~~~e-ea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 58 CRVEDRGLKT-HHGHMVYVLSVYNKK-EKYHRITMAAFNIQ-EALIWKEKIESVIDQH 112 (719)
T ss_pred ceEeecCceE-EcCceEEEEEEecCC-CccccEEEecCCHH-HHHHHHHHHHHHHhhh
Confidence 2344432110 011233444333321 23556777776666 9999999999999854
No 138
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=35.01 E-value=26 Score=38.35 Aligned_cols=49 Identities=16% Similarity=0.008 Sum_probs=44.3
Q ss_pred hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCC
Q psy2293 240 LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDS 289 (832)
Q Consensus 240 ~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~ 289 (832)
..+|...++++.|-++..+..+.+-+...||.+. ..++..+||+|+.+.
T Consensus 120 ~~aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~-tfF~~~VThfiTrR~ 168 (468)
T COG5067 120 CCAFPAFKFYKDNKSGKRKHRVKEGFCELGAVVF-TFFEEHVTHFITRRF 168 (468)
T ss_pred hcccchhhhhhcCCCHHHHHHHHHHHHHhhhhhh-eeeccceEEEEEeee
Confidence 3468899999999999999999999999999999 889999999999763
No 139
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=34.93 E-value=1.1e+02 Score=27.65 Aligned_cols=98 Identities=11% Similarity=0.191 Sum_probs=56.1
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
|-+|.+.++++..-...+.+|+.||-+-|.+ ...+.. ..| ....+-.+.++..
T Consensus 4 IvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~-~~~~~~----~~~----------------------eLi~M~~i~~V~~ 56 (116)
T cd01240 4 IVHGYIKKLGGPFLSQWQTRYFKLYPNRLEL-YGESEA----NKP----------------------ELITMDQIEDVSV 56 (116)
T ss_pred EEeeehhhhCCHHHHHHHHHHheeCcceeee-cccccc----cCC----------------------cEEEeehhhhcch
Confidence 5678887776544444678999999999999 322111 111 1111111122100
Q ss_pred -EeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 707 -VYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 707 -v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
...+. ..++..|.+++. ..+.+.+.+. .+-..|..+|..+....+
T Consensus 57 e~~~iK------~~~CI~ik~k~~-----~k~vlt~~d~-i~l~qW~~elr~a~r~Sq 102 (116)
T cd01240 57 EFQQIK------EENCILLKIRDE-----KKIVLTNSDE-IELKQWKKELRDAHRESQ 102 (116)
T ss_pred hheeec------cCceEEEEEcCC-----ceEEEecCCc-HHHHHHHHHHHHHHHHHH
Confidence 01111 236777766653 4588887654 499999999988765543
No 140
>KOG2424|consensus
Probab=30.44 E-value=66 Score=31.66 Aligned_cols=124 Identities=9% Similarity=0.089 Sum_probs=77.2
Q ss_pred CCCceeEEEeeccc--CcHHHHHHHhhCCCceEee-------------cCCceEEecCCCCCcccccccccccchhhhCC
Q psy2293 47 PGMPCQICVCSNVD--QTETFKKALASFNVPVVLV-------------EDPDYFVHAKFDGPIIIVTSEFTNNFLRFHKP 111 (832)
Q Consensus 47 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~ 111 (832)
+.+.-++++|+++. +.-+.-.+|++.|.++--. +.|.+|.+. + +. .+.|..+...
T Consensus 2 ~~~~l~~avvC~sN~NRSMeaH~~L~~~G~~v~S~GTg~~vklPG~~~dkPNvY~Fg-t--~Y-------~~iy~dL~~k 71 (195)
T KOG2424|consen 2 LSSNLRVAVVCASNQNRSMEAHNILKKKGLNVRSFGTGSHVKLPGPSPDKPNVYDFG-T--TY-------KQIYNDLLRK 71 (195)
T ss_pred CCccceeeeeehhcccchHHHHHHHHHcCCcceeecCCCceeCCCCCCCCCCccccC-C--cH-------HHHHHHHHhh
Confidence 34556788888666 5677888999888766553 223455554 2 21 2227777777
Q ss_pred CCCeEeCHHHHHHHHHhccccccCC-CCCCCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEE
Q psy2293 112 PQSRILGPTALIEMSIKVENLSIPL-RTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLI 190 (832)
Q Consensus 112 ~~~~i~gp~~v~~~~~~~~~~~~~l-p~~~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLI 190 (832)
+..-+.-.-+++.+..++ .+ +.+.+-..|.=+.++++||--=- -..+.+-....|++ +.+.-|+|
T Consensus 72 -d~~~Y~~nGiL~mldRNr----riK~~Per~q~~t~~FDvV~TcEErv----yD~VvEdl~~re~~-----~~qpVhvi 137 (195)
T KOG2424|consen 72 -DRELYTRNGILHMLDRNR----RIKPAPERFQECTEVFDVVFTCEERV----FDSVVEDLNSREQS-----LNQPVHVI 137 (195)
T ss_pred -hHHHHhhcccchhhhccc----ccccCCcchhhccccceEEEEehhHH----HHHHHHHHHhcccc-----cCCceEEE
Confidence 777777777888888888 55 44445455888889999982110 02333333444444 34566877
Q ss_pred eccC
Q psy2293 191 ANCV 194 (832)
Q Consensus 191 a~~~ 194 (832)
--+.
T Consensus 138 N~DI 141 (195)
T KOG2424|consen 138 NVDI 141 (195)
T ss_pred Eeec
Confidence 6555
No 141
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=27.68 E-value=1e+03 Score=27.63 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=105.6
Q ss_pred cccCCCchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHH
Q psy2293 393 DVMIKGNSPRHQVFKE----LCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDL 468 (832)
Q Consensus 393 ~~~~~~~~kRq~vi~E----Ll~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L 468 (832)
+.+.....+|...|.+ |...|..=.+.|+.+...|...|.+. ..+.+.++..++. .+++.+++.+|..=
T Consensus 75 ~~v~~~~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~i-----a~~~~~dv~rli~--~ea~~iN~~ll~Nr 147 (473)
T PF14643_consen 75 DEVAEHSQKRKQWIKELDEDLEELEKERADKLKKVLRKYVEILEKI-----AHLLPPDVERLIE--KEAMEINQALLGNR 147 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HccCcHHHHHHHH--HHHHHHHHHHHHhH
Confidence 3344445566666655 46778888999999999999999886 3456666666665 56667777766222
Q ss_pred HHHHhcCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhh
Q psy2293 469 KYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLI 548 (832)
Q Consensus 469 ~~~~~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi 548 (832)
..+++.|.+....=.+.-..|...+......++.++.+..++.|...+.+. .+-+|.....-+..+.-
T Consensus 148 ----------ra~a~L~~~L~~~~~~~e~~~~~~w~~~~~~Wr~l~~~~~i~~f~~~~~s~--~~~~P~~~~~~~e~~~~ 215 (473)
T PF14643_consen 148 ----------RAYADLFANLMEAELQRELSYRRRWQDRVDDWRALRHERAIQEFREFMASE--EFQNPPERKQLLEQMRK 215 (473)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcc--ccCCChHHHHHHHHHHH
Confidence 335666666544333555677777777777777777664444444433330 11134444333444443
Q ss_pred hHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy2293 549 RPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNE 594 (832)
Q Consensus 549 ~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe 594 (832)
.=..--.+-.-+|..+....|+... ...+.+-+..+..+.+.++.
T Consensus 216 ~Q~~l~~~r~~~L~~l~~l~Pp~~t-~~~v~eW~~~l~~l~~~~d~ 260 (473)
T PF14643_consen 216 EQVDLHEKRLELLQSLCDLLPPNLT-KEKVEEWYASLNALNEQIDE 260 (473)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 3332223344467777777776532 23355555555555554443
No 142
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=27.37 E-value=17 Score=36.19 Aligned_cols=119 Identities=12% Similarity=0.194 Sum_probs=63.4
Q ss_pred eeEEEeeccc--CcHHHHHHHhhCCCceEeecC-------------CceEEecCCCCCcccccccccccchhhhCCCCCe
Q psy2293 51 CQICVCSNVD--QTETFKKALASFNVPVVLVED-------------PDYFVHAKFDGPIIIVTSEFTNNFLRFHKPPQSR 115 (832)
Q Consensus 51 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~~~~ 115 (832)
-|||+|+++. ...+.-..|.+.|..|.-.+. |.+| +|. +. -.+=|+.|.+. +..
T Consensus 2 l~~avVCasN~NRSMEAH~~L~~~G~~V~SfGTGs~VkLPGps~d~PnvY---~Fg-T~------Y~~iy~dL~~k-d~~ 70 (195)
T PF04722_consen 2 LRFAVVCASNQNRSMEAHNVLKKAGFNVRSFGTGSHVKLPGPSIDKPNVY---DFG-TP------YDDIYNDLLRK-DKE 70 (195)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHTT-EEEEEE-SSSEEEEESSTTCEEEE----TT-S-------HHHHHHHHHHH-HHH
T ss_pred ceEEEEccCCCCcCHHHHHHHHHCCCceEeecCCCcccCCCCCCCCCccc---CCC-Cc------HHHHHHHHHHh-CHH
Confidence 4799999776 466788899998876665322 2244 442 22 01116666666 666
Q ss_pred EeCHHHHHHHHHhccccccCC-CCCCCCccccCC--CceEEEEcCCCChHhH--HHHHHHHHhcCCEEEeecCcceeEEE
Q psy2293 116 ILGPTALIEMSIKVENLSIPL-RTRIRPLFCHSM--QNIVICITGFRNKQET--MKLIDITKHMGGKLRKEMNYQVTHLI 190 (832)
Q Consensus 116 i~gp~~v~~~~~~~~~~~~~l-p~~~~P~~~~~~--~g~~i~~tg~~~~~~~--~~l~~~v~~~GG~~~~~l~~~~THLI 190 (832)
.+.-.=|+..+.+++ .+ |.+.|-.-+.-. .+|+||| +|| ..+.+-...-| .-+.+--|+|
T Consensus 71 lY~~NGlL~ML~RN~----~iK~~PERfQ~~~~~~~fDvIiTc------EERvfD~Vvedl~~R~-----~~~~~pvHVI 135 (195)
T PF04722_consen 71 LYTQNGLLHMLDRNR----RIKPAPERFQDCKEKGKFDVIITC------EERVFDQVVEDLNSRE-----QETNQPVHVI 135 (195)
T ss_dssp HHHHTSHHHHHHHHH----CH-SS--BGGG-------SEEEES------SHHHHHHHHHHHHCS-------SS-EEEEEE
T ss_pred HHHHcCcHHHHhcCc----cccCCccchhcCCCCcceeEEEEe------chHHHHHHHHHHHhcc-----ccCCceEEEE
Confidence 676677888888888 55 434443334444 7888887 222 23443344444 2244567888
Q ss_pred eccCC
Q psy2293 191 ANCVS 195 (832)
Q Consensus 191 a~~~~ 195 (832)
--+..
T Consensus 136 NvDIk 140 (195)
T PF04722_consen 136 NVDIK 140 (195)
T ss_dssp EE---
T ss_pred Eeecc
Confidence 87763
No 143
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=25.63 E-value=8.1e+02 Score=28.64 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=51.8
Q ss_pred hHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHhhHHHH
Q psy2293 481 IGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLL 560 (832)
Q Consensus 481 Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~rY~LL 560 (832)
+-+++-+|..++ +-|-.|+.+|-.+...+-.-+....+.+.-.+++. |...+..-.-|..+|.|=
T Consensus 19 ~~~~Y~~~l~q~-d~yn~~f~~F~~S~ke~I~~m~~~~~~~L~~eI~~--------------LK~~~q~s~d~y~kYKLK 83 (574)
T PF07462_consen 19 MENIYEKHLSQI-DKYNDYFKKFLESKKELINKMTEEKWNALGEEIEE--------------LKKKIQVSLDHYGKYKLK 83 (574)
T ss_pred HHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------HHHHHHhhhhhhhhHHHH
Confidence 456677777777 68888888887776655544444566666666665 444555667788999999
Q ss_pred HHHHHhhC
Q psy2293 561 LNDILKNT 568 (832)
Q Consensus 561 L~~llk~t 568 (832)
|+++++.-
T Consensus 84 LeR~~~Kk 91 (574)
T PF07462_consen 84 LERLLKKK 91 (574)
T ss_pred HHHHHHHH
Confidence 99999863
No 144
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=24.71 E-value=5.8e+02 Score=23.80 Aligned_cols=74 Identities=8% Similarity=0.190 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCC----CchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHH
Q psy2293 453 DLCPIFDTHKDLLKDLKYLEQNYSDS----VSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLC 526 (832)
Q Consensus 453 ni~~I~~~h~~fl~~L~~~~~~~~~~----~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~ 526 (832)
++..|+.+.+.++..|+..+..-... ....+.+.........-...|+.|=-.|..+++++... +.+..+++..
T Consensus 5 ~m~~Ll~~E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~~ 83 (134)
T PF08336_consen 5 DMEKLLELEEELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQP 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 34556666666666665544322111 11122222222222223456777777888888887776 6666666543
No 145
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=24.54 E-value=87 Score=31.98 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=48.2
Q ss_pred CCCccccccccceecc-eeecCCCcccccCCCCCCceeEEEeecccCcHHHHHHHhhCCCceEeecCCceEEecC
Q psy2293 16 PGGTTAIQSEPMEVDC-SIMQPSEETEEKDTEPGMPCQICVCSNVDQTETFKKALASFNVPVVLVEDPDYFVHAK 89 (832)
Q Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 89 (832)
-||.+.|.-|-.-+.. .+-.||.++..-...+-.+..-.-..+.-..+.+.+++++.|+|+..+.+.+.|+|+.
T Consensus 70 a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~y~ttlp~~~l~~~l~~~gip~~~S~dAG~ylCN~ 144 (208)
T PRK13194 70 APGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVEGAPAAYFATLPTREIVEELKKNGIPAVLSYSAGTYLCNY 144 (208)
T ss_pred cCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCHHHHHHHHHhcCCCcEEeCCCccchhHH
Confidence 3688888888766653 4456888865433222110000000011246889999999999999999999999987
No 146
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.95 E-value=1.3e+02 Score=30.97 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=46.8
Q ss_pred CCCccccccccceecce----eecCCCcccccCCCCCCceeEEEeecccCcHHHHHHHhhCCCceEeecCCceEEecC
Q psy2293 16 PGGTTAIQSEPMEVDCS----IMQPSEETEEKDTEPGMPCQICVCSNVDQTETFKKALASFNVPVVLVEDPDYFVHAK 89 (832)
Q Consensus 16 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 89 (832)
-||.+.|.-|-.-+.+. +=.||.++..-...+-.+.-=.-.-+.-..+.+.+++++.|+|+-.+.+.+.|||+.
T Consensus 71 a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~~gp~ay~stLpv~~iv~~l~~~gipa~vS~~AGtYvCN~ 148 (222)
T PRK13195 71 YPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGEPTDPAGPVAYHATVPVRAMVLAMRKAGVPADVSDAAGTFVCNH 148 (222)
T ss_pred cCCcCceEeEEEEEecccccccCCCCCCCCcCCCCcccCCCcceeecCCCHHHHHHHHHhcCCCceEecCCCcceehH
Confidence 37888998887554432 125777644322222111100001122257899999999999999999999999987
No 147
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=20.97 E-value=3.9e+02 Score=22.52 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHH
Q psy2293 401 PRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKD 467 (832)
Q Consensus 401 kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~ 467 (832)
.-...+.|-..-|..|.+.|..+...+......... .+.+ ..-...+-...+.+-..|..|-..
T Consensus 27 ~l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~--~~t~-~~~~~~~~~~~~~~a~~h~~~a~~ 90 (91)
T PF00611_consen 27 ELASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQE--YGTL-KNAWDSLLEETEQIAEQHSKLAEN 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--ccHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888899999999999999999877653210 0000 122333444455555556655443
No 148
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=20.93 E-value=6.4e+02 Score=22.96 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=22.8
Q ss_pred eEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 735 TTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 735 ~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
....|.|.+. .+++.|.+.|...+....+
T Consensus 80 G~vEfec~~~-~~~k~W~~gI~~mL~~~~~ 108 (110)
T PF08458_consen 80 GVVEFECDSQ-REYKRWVQGIQHMLSQVAE 108 (110)
T ss_pred cEEEEEeCCh-hhHHHHHHHHHHHHHHhhc
Confidence 4788888664 5999999999988776543
No 149
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=20.89 E-value=8.9e+02 Score=24.57 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=18.3
Q ss_pred hHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHH
Q psy2293 544 PDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEAL 582 (832)
Q Consensus 544 ~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~ 582 (832)
..-++.|++++..|---++..++.-..---||..++..+
T Consensus 95 ~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~ 133 (216)
T cd07599 95 EERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKL 133 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344556666666655444444443332233444444333
Done!