Query psy2293
Match_columns 832
No_of_seqs 573 out of 2884
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:00:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xcg_A PDZ-rhogef, RHO guanine 100.0 2.9E-50 1E-54 448.5 39.1 347 383-761 3-367 (368)
2 2dfk_A Collybistin II; DH doma 100.0 4.5E-50 1.5E-54 451.0 40.7 330 392-764 32-367 (402)
3 2z0q_A XPLN, RHO guanine nucle 100.0 6.1E-51 2.1E-55 450.1 31.0 322 392-759 10-345 (346)
4 3t06_A PDZ-rhogef, RHO guanine 100.0 8.9E-50 3.1E-54 452.1 39.1 352 380-763 42-411 (418)
5 3p6a_A RHO guanine nucleotide 100.0 7.7E-49 2.6E-53 438.6 38.9 348 382-763 8-374 (377)
6 2pz1_A RHO guanine nucleotide 100.0 2.1E-48 7.2E-53 446.7 40.1 329 393-764 110-444 (466)
7 2vrw_B P95VAV, VAV1, proto-onc 100.0 4.4E-48 1.5E-52 436.3 37.3 317 397-765 21-340 (406)
8 1txd_A RHO guanine nucleotide 100.0 5E-48 1.7E-52 432.9 36.4 344 387-765 10-374 (385)
9 3mpx_A FYVE, rhogef and PH dom 100.0 2.7E-48 9.2E-53 442.3 34.2 319 397-764 18-341 (434)
10 3odw_A RHO guanine nucleotide 100.0 9.2E-48 3.1E-52 445.9 37.9 350 381-764 160-528 (536)
11 1dbh_A Protein (human SOS 1); 100.0 2.5E-47 8.4E-52 422.6 29.9 318 402-761 4-350 (354)
12 3olc_X DNA topoisomerase 2-bin 100.0 1E-47 3.5E-52 411.1 22.5 263 53-331 11-288 (298)
13 1foe_A T-lymphoma invasion and 100.0 7.9E-46 2.7E-50 413.9 36.1 340 399-765 9-371 (377)
14 3ky9_A Proto-oncogene VAV; cal 100.0 8.6E-46 2.9E-50 435.8 34.6 318 396-765 192-512 (587)
15 1kz7_A Guanine nucleotide exch 100.0 2E-44 6.8E-49 398.3 31.7 312 394-764 4-329 (353)
16 2rgn_B RHOA/RAC/CDC42 exchange 100.0 4.9E-43 1.7E-47 387.4 32.5 309 397-763 8-321 (354)
17 3jzy_A Intersectin 2; C2 domai 100.0 9.1E-47 3.1E-51 438.9 0.0 342 384-763 10-365 (510)
18 1nty_A Triple functional domai 100.0 3.4E-42 1.2E-46 374.2 33.9 301 397-762 5-310 (311)
19 3ksy_A SOS-1, SON of sevenless 100.0 2.6E-42 9E-47 427.9 24.8 324 394-761 193-547 (1049)
20 3jv3_A Intersectin-1; SH3 doma 100.0 4.5E-36 1.5E-40 321.9 22.3 207 392-610 73-283 (283)
21 1by1_A Protein (PIX); RHO-GTPa 100.0 1.8E-36 6E-41 309.8 17.5 194 395-602 7-200 (209)
22 2nte_A BARD-1, BRCA1-associate 99.9 4.8E-24 1.6E-28 217.7 17.7 173 150-323 2-209 (210)
23 1l0b_A BRCA1; TANDEM-BRCT, thr 99.9 4.1E-24 1.4E-28 221.4 17.0 184 146-330 3-215 (229)
24 1t15_A Breast cancer type 1 su 99.9 1.8E-23 6E-28 214.3 16.6 181 148-329 2-212 (214)
25 3l46_A Protein ECT2; alternati 99.9 5.4E-24 1.9E-28 191.5 9.7 95 235-330 14-108 (112)
26 3u3z_A Microcephalin; DNA repa 99.9 6.4E-23 2.2E-27 206.6 15.4 169 151-328 12-198 (199)
27 2etx_A Mediator of DNA damage 99.9 2.4E-22 8E-27 204.6 14.7 179 146-331 8-205 (209)
28 3ii6_X DNA ligase 4; XRCC4, NH 99.9 4.1E-22 1.4E-26 209.6 15.7 180 145-327 8-263 (263)
29 2cou_A ECT2 protein; BRCT doma 99.9 1.6E-22 5.6E-27 183.0 9.0 101 234-336 4-104 (109)
30 3sqd_A PAX-interacting protein 99.9 4.2E-21 1.4E-25 196.0 15.2 179 146-327 12-218 (219)
31 1kzy_C Tumor suppressor P53-bi 99.8 1.3E-20 4.4E-25 197.6 11.8 180 145-324 13-248 (259)
32 3olc_X DNA topoisomerase 2-bin 99.8 1.3E-19 4.4E-24 193.6 14.2 166 49-228 107-280 (298)
33 3al2_A DNA topoisomerase 2-bin 99.8 2.3E-18 7.7E-23 177.6 14.8 180 147-329 6-230 (235)
34 2vxb_A DNA repair protein RHP9 99.8 5E-18 1.7E-22 175.8 16.5 170 147-321 2-240 (241)
35 1z56_C DNA ligase IV; DNA repa 99.8 5E-20 1.7E-24 194.7 0.0 182 146-329 4-263 (264)
36 2lg1_A A-kinase anchor protein 99.7 1.1E-17 3.6E-22 165.8 7.2 166 567-765 2-177 (185)
37 3l46_A Protein ECT2; alternati 99.7 1.3E-17 4.5E-22 149.9 6.6 81 147-228 21-101 (112)
38 2cou_A ECT2 protein; BRCT doma 99.7 2.8E-17 9.7E-22 148.5 4.8 81 147-228 12-92 (109)
39 3l41_A BRCT-containing protein 99.6 1.1E-15 3.9E-20 155.4 12.8 173 149-326 7-213 (220)
40 2d8m_A DNA-repair protein XRCC 99.6 5.1E-16 1.8E-20 144.9 7.0 90 240-330 20-109 (129)
41 2d8m_A DNA-repair protein XRCC 99.6 9.1E-16 3.1E-20 143.2 8.2 92 136-228 11-102 (129)
42 3l3e_A DNA topoisomerase 2-bin 99.6 5.8E-16 2E-20 139.7 6.5 90 239-329 12-104 (107)
43 4id3_A DNA repair protein REV1 99.6 7.8E-16 2.7E-20 135.0 6.8 85 240-327 5-91 (92)
44 2ebw_A DNA repair protein REV1 99.6 1.5E-15 5.3E-20 134.5 6.9 87 240-328 10-96 (97)
45 3l3e_A DNA topoisomerase 2-bin 99.6 5.7E-15 2E-19 133.2 9.0 81 147-228 15-98 (107)
46 1zc3_B Exocyst complex protein 99.5 9.4E-14 3.2E-18 125.8 14.5 109 620-763 2-110 (113)
47 4id3_A DNA repair protein REV1 99.5 3.7E-14 1.3E-18 124.2 7.9 84 142-228 2-87 (92)
48 3pa6_A Microcephalin; BRCT dom 99.5 1.7E-14 5.9E-19 128.9 5.3 91 239-330 4-98 (107)
49 2ebw_A DNA repair protein REV1 99.5 5.6E-14 1.9E-18 124.4 8.3 84 142-228 7-91 (97)
50 1z56_C DNA ligase IV; DNA repa 99.5 1.1E-14 3.9E-19 153.6 2.2 159 61-228 27-257 (264)
51 1wf6_A Similar to S.pombe -RAD 99.5 1.2E-13 4.2E-18 129.2 9.0 88 240-329 38-128 (132)
52 3pa6_A Microcephalin; BRCT dom 99.4 1.4E-13 4.9E-18 122.9 7.3 82 147-228 7-91 (107)
53 3pc6_A DNA repair protein XRCC 99.4 2.5E-13 8.6E-18 120.0 7.8 88 241-329 6-96 (104)
54 3qwm_A Iqsec1, IQ motif and SE 99.4 3.7E-12 1.3E-16 117.3 14.8 118 618-763 5-125 (140)
55 3ef1_A RNA polymerase II subun 99.3 6.3E-13 2.1E-17 146.7 5.3 94 233-327 343-441 (442)
56 3ef0_A RNA polymerase II subun 99.3 1.3E-12 4.4E-17 142.8 6.2 95 232-327 272-371 (372)
57 3ii6_X DNA ligase 4; XRCC4, NH 99.3 2.3E-11 7.8E-16 127.6 15.2 165 51-228 14-259 (263)
58 3ef1_A RNA polymerase II subun 99.3 2.3E-12 7.9E-17 142.2 7.5 82 147-228 352-437 (442)
59 1t15_A Breast cancer type 1 su 99.3 9.6E-12 3.3E-16 126.8 11.6 154 61-228 16-206 (214)
60 1l0b_A BRCA1; TANDEM-BRCT, thr 99.3 9E-12 3.1E-16 128.4 11.3 171 52-244 9-216 (229)
61 3ef0_A RNA polymerase II subun 99.3 3.9E-12 1.3E-16 139.0 8.6 84 145-228 280-367 (372)
62 2vxb_A DNA repair protein RHP9 99.2 1.8E-11 6.2E-16 126.5 11.0 168 50-226 5-240 (241)
63 3sqd_A PAX-interacting protein 99.2 5.9E-12 2E-16 128.2 7.2 90 238-329 9-99 (219)
64 3pc6_A DNA repair protein XRCC 99.2 2.2E-11 7.5E-16 107.6 9.6 83 146-228 6-90 (104)
65 3u3z_A Microcephalin; DNA repa 99.2 1.6E-11 5.3E-16 123.3 9.5 148 61-228 23-193 (199)
66 1kzy_C Tumor suppressor P53-bi 99.2 4.8E-11 1.6E-15 124.8 13.2 161 61-228 59-247 (259)
67 1wf6_A Similar to S.pombe -RAD 99.2 4.5E-11 1.6E-15 111.7 11.2 82 145-228 38-122 (132)
68 2etx_A Mediator of DNA damage 99.2 8.2E-11 2.8E-15 119.3 13.1 160 50-227 12-196 (209)
69 2nte_A BARD-1, BRCA1-associate 99.2 2.1E-11 7.1E-16 123.9 7.7 85 244-329 1-88 (210)
70 3al2_A DNA topoisomerase 2-bin 99.1 6.6E-11 2.2E-15 121.8 7.4 87 244-330 8-96 (235)
71 1l7b_A DNA ligase; BRCT, autos 99.1 1.2E-10 4E-15 100.8 7.4 74 147-221 7-80 (92)
72 1v61_A RAC/CDC42 guanine nucle 99.0 8.5E-10 2.9E-14 101.7 10.6 118 609-762 11-128 (132)
73 2ep8_A Pescadillo homolog 1; A 99.0 5.4E-10 1.8E-14 98.3 8.1 80 241-326 11-100 (100)
74 1fho_A UNC-89; pleckstrin homo 99.0 4.2E-10 1.4E-14 102.1 5.9 112 618-764 3-116 (119)
75 2jw5_A DNA polymerase lambda; 98.9 1.2E-09 4E-14 97.5 6.2 88 240-328 9-104 (106)
76 3pc7_A DNA ligase 3; DNA repai 98.9 1.3E-09 4.4E-14 92.5 5.7 76 238-322 12-87 (88)
77 1l7b_A DNA ligase; BRCT, autos 98.9 1.5E-09 5E-14 93.9 5.6 75 241-316 6-80 (92)
78 2k6g_A Replication factor C su 98.9 3.5E-09 1.2E-13 94.5 8.1 76 147-222 32-108 (109)
79 3l41_A BRCT-containing protein 98.9 4.9E-10 1.7E-14 113.8 1.9 81 244-329 7-88 (220)
80 2ebu_A Replication factor C su 98.8 8.9E-09 3E-13 92.0 9.3 76 147-222 22-98 (112)
81 2cok_A Poly [ADP-ribose] polym 98.7 2.7E-08 9.4E-13 89.1 7.1 76 147-223 10-88 (113)
82 2coe_A Deoxynucleotidyltransfe 98.6 5.3E-08 1.8E-12 87.8 6.4 88 241-329 19-116 (120)
83 2k6g_A Replication factor C su 98.6 3.4E-08 1.2E-12 88.1 4.9 75 242-317 32-108 (109)
84 2ep8_A Pescadillo homolog 1; A 98.6 1E-07 3.6E-12 83.7 7.3 76 146-228 11-97 (100)
85 2ebu_A Replication factor C su 98.5 7.6E-08 2.6E-12 86.0 5.8 74 242-316 22-97 (112)
86 3pc7_A DNA ligase 3; DNA repai 98.4 7.3E-07 2.5E-11 75.6 7.3 69 147-226 16-86 (88)
87 2coe_A Deoxynucleotidyltransfe 98.4 1.7E-06 5.8E-11 78.0 10.2 88 141-228 14-109 (120)
88 4gou_A EHRGS-rhogef; RGS domai 98.3 0.0011 3.8E-08 65.8 28.5 174 401-594 187-372 (518)
89 2cok_A Poly [ADP-ribose] polym 98.3 3.6E-07 1.2E-11 81.8 3.2 77 241-318 9-88 (113)
90 2jw5_A DNA polymerase lambda; 98.2 4.7E-07 1.6E-11 80.6 3.5 84 145-228 9-99 (106)
91 2dun_A POL MU, DNA polymerase 98.2 9.7E-07 3.3E-11 79.9 4.8 88 241-329 9-109 (133)
92 3huf_A DNA repair and telomere 97.9 6.5E-05 2.2E-09 78.2 13.0 166 143-316 108-303 (325)
93 3t7k_A RTT107, regulator of TY 97.9 2.1E-05 7.2E-10 78.9 7.9 168 149-317 21-239 (256)
94 2dun_A POL MU, DNA polymerase 97.8 2E-05 7E-10 71.3 6.3 87 142-228 5-102 (133)
95 2dn6_A KIAA0640 protein; PH do 97.7 0.00034 1.2E-08 62.7 12.1 104 622-764 4-107 (115)
96 1dgs_A DNA ligase; AMP complex 97.5 1.4E-05 4.6E-10 93.0 0.0 77 145-222 585-661 (667)
97 4gns_A Chitin biosynthesis pro 97.5 0.00023 7.9E-09 66.0 7.4 96 147-242 161-267 (290)
98 1v89_A Hypothetical protein KI 97.4 0.0018 6.2E-08 58.0 13.1 108 623-762 5-114 (118)
99 2owo_A DNA ligase; protein-DNA 97.4 2.5E-05 8.6E-10 90.8 0.0 75 146-220 596-670 (671)
100 2lul_A Tyrosine-protein kinase 97.4 0.001 3.5E-08 64.0 11.2 107 623-764 12-125 (164)
101 2d9y_A Pleckstrin homology dom 97.4 0.0011 3.7E-08 59.6 10.7 104 622-761 7-110 (117)
102 2cod_A Centaurin-delta 1; ARF 97.3 0.0017 5.8E-08 58.2 11.8 99 622-763 4-102 (115)
103 2yry_A Pleckstrin homology dom 97.3 0.0021 7.1E-08 58.1 12.3 103 621-759 17-119 (122)
104 2l42_A DNA-binding protein RAP 97.3 0.00016 5.5E-09 61.0 3.9 85 237-329 6-96 (106)
105 2i5f_A Pleckstrin; PH domain, 97.3 0.0025 8.7E-08 56.2 12.1 100 623-759 4-108 (109)
106 1upq_A PEPP1; PH domain, phosp 97.3 0.0025 8.6E-08 57.7 12.3 106 621-762 6-111 (123)
107 1pls_A Pleckstrin homology dom 97.3 0.0019 6.6E-08 57.6 11.1 101 626-764 5-105 (113)
108 2dkp_A Pleckstrin homology dom 97.2 0.0023 7.7E-08 58.5 11.5 104 621-760 16-119 (128)
109 1u5d_A SKAP55, SRC kinase-asso 97.2 0.0022 7.4E-08 56.5 10.7 102 625-762 2-107 (108)
110 1fao_A Dual adaptor of phospho 97.2 0.0016 5.6E-08 59.3 10.2 101 623-763 15-115 (126)
111 1eaz_A Tandem PH domain contai 97.1 0.0014 4.7E-08 59.6 9.0 106 622-764 10-115 (125)
112 1btk_A Bruton'S tyrosine kinas 97.1 0.0035 1.2E-07 60.6 11.9 104 626-762 3-134 (169)
113 1x1f_A Signal-transducing adap 97.1 0.0048 1.6E-07 58.2 12.3 99 623-760 15-113 (149)
114 1dgs_A DNA ligase; AMP complex 97.0 9.4E-05 3.2E-09 85.9 0.0 76 241-317 586-661 (667)
115 1fgy_A GRP1; PH domain, signal 97.0 0.0046 1.6E-07 56.2 11.5 102 627-763 6-123 (127)
116 1x1g_A Pleckstrin 2; PH domain 97.0 0.0029 9.8E-08 57.9 9.5 106 620-761 12-125 (129)
117 2rsg_A Collagen type IV alpha- 96.9 0.0036 1.2E-07 53.7 9.3 91 627-758 2-92 (94)
118 1x05_A Pleckstrin; PH domain, 96.9 0.0064 2.2E-07 55.5 11.3 105 622-763 14-123 (129)
119 1wi1_A Calcium-dependent activ 96.8 0.0066 2.2E-07 55.0 10.4 100 626-762 8-112 (126)
120 2w2x_D 1-phosphatidylinositol- 96.8 0.0046 1.6E-07 56.4 9.4 111 625-762 11-121 (124)
121 2p0d_A RHO GTPase-activating p 96.8 0.013 4.5E-07 53.7 12.4 113 624-763 10-127 (129)
122 2owo_A DNA ligase; protein-DNA 96.8 0.0002 6.8E-09 83.3 0.0 74 241-315 596-670 (671)
123 2dhk_A TBC1 domain family memb 96.8 0.0065 2.2E-07 54.8 10.1 99 625-764 7-108 (119)
124 1u5f_A SRC-associated adaptor 96.8 0.01 3.5E-07 55.7 11.9 106 622-763 13-122 (148)
125 1v5u_A SBF1, SET binding facto 96.7 0.0054 1.9E-07 54.8 8.8 99 625-760 7-111 (117)
126 1dyn_A Dynamin; signal transdu 96.7 0.02 6.7E-07 51.5 11.8 101 626-758 12-115 (125)
127 1wg7_A Dedicator of cytokinesi 96.6 0.0075 2.6E-07 56.7 9.9 103 622-762 14-126 (150)
128 1wgq_A FYVE, rhogef and PH dom 96.6 0.014 4.7E-07 51.5 10.9 95 627-760 9-103 (109)
129 2da0_A 130-kDa phosphatidylino 96.5 0.017 5.7E-07 51.6 10.7 98 625-765 9-106 (114)
130 2cof_A Protein KIAA1914; PH do 96.5 0.0084 2.9E-07 52.9 8.4 96 624-760 6-101 (107)
131 1unq_A RAC-alpha serine/threon 96.5 0.0058 2E-07 55.5 7.6 105 624-765 6-115 (125)
132 2dtc_A RAL guanine nucleotide 96.4 0.042 1.4E-06 50.0 12.8 90 643-763 24-115 (126)
133 4a6h_A Phosphatidylinositol 4, 96.4 0.024 8.3E-07 51.2 11.2 105 626-759 6-117 (120)
134 3cxb_B Pleckstrin homology dom 96.3 0.028 9.4E-07 50.1 11.1 98 628-762 2-103 (112)
135 2l42_A DNA-binding protein RAP 96.3 0.0026 8.8E-08 53.7 3.8 75 146-228 10-90 (106)
136 2rlo_A Centaurin-gamma 1; spli 96.3 0.034 1.2E-06 50.7 11.8 39 718-762 88-126 (128)
137 3rcp_A Pleckstrin homology dom 96.3 0.011 3.7E-07 51.6 8.0 94 629-762 2-95 (103)
138 2d9x_A Oxysterol binding prote 96.2 0.013 4.5E-07 52.8 8.4 99 626-764 8-108 (120)
139 1u5e_A SRC-associated adaptor 96.2 0.027 9.3E-07 56.4 11.2 102 624-761 104-209 (211)
140 3aj4_A Pleckstrin homology dom 96.1 0.019 6.6E-07 50.8 8.9 36 719-760 76-111 (112)
141 1v88_A Oxysterol binding prote 96.1 0.027 9.3E-07 51.7 10.0 100 625-760 7-124 (130)
142 4h8s_A DCC-interacting protein 96.1 0.19 6.4E-06 55.6 18.8 100 624-762 299-400 (407)
143 3tfm_A Myosin X; split PH doma 96.1 0.029 1E-06 56.9 10.9 98 623-761 55-156 (228)
144 3huf_A DNA repair and telomere 96.0 0.0056 1.9E-07 63.8 5.3 71 243-316 113-187 (325)
145 2q13_A DCC-interacting protein 96.0 2.3 7.9E-05 46.3 29.1 100 625-763 277-378 (385)
146 1v5p_A Pleckstrin homology dom 96.0 0.032 1.1E-06 50.9 9.9 107 623-760 12-120 (126)
147 2d9v_A Pleckstrin homology dom 96.0 0.12 4E-06 47.2 13.6 103 623-761 5-115 (130)
148 1wjm_A Beta-spectrin III; PH d 95.9 0.039 1.3E-06 49.8 9.8 105 626-762 8-119 (123)
149 2y7b_A Actin-binding protein a 95.8 0.025 8.7E-07 51.8 8.6 113 625-765 4-133 (134)
150 2coc_A FYVE, rhogef and PH dom 95.7 0.038 1.3E-06 49.3 8.9 56 697-760 51-106 (112)
151 3lju_X ARF-GAP with dual PH do 95.7 0.031 1.1E-06 61.4 10.1 103 623-761 266-373 (386)
152 3a8p_A T-lymphoma invasion and 95.6 0.07 2.4E-06 55.2 11.7 108 624-763 9-127 (263)
153 3pp2_A RHO GTPase-activating p 95.1 0.15 5.2E-06 46.1 11.0 90 643-760 31-123 (124)
154 1qqg_A IRS-1, insulin receptor 95.1 0.059 2E-06 55.8 9.1 103 623-764 7-116 (264)
155 2r09_A Cytohesin-3; autoinhibi 95.0 0.16 5.4E-06 54.9 12.7 101 626-761 213-329 (347)
156 2j59_M RHO-GTPase activating p 95.0 0.09 3.1E-06 50.3 9.6 83 643-760 29-111 (168)
157 3t7k_A RTT107, regulator of TY 94.8 0.024 8.2E-07 57.0 5.0 87 244-330 21-121 (256)
158 1btn_A Beta-spectrin; signal t 94.8 0.12 4.1E-06 44.8 9.2 84 643-758 23-106 (106)
159 2fjl_A 1-phosphatidylinositol- 94.8 0.43 1.5E-05 44.4 13.0 127 627-760 2-148 (150)
160 2d9w_A Docking protein 2; PH d 94.6 0.49 1.7E-05 42.4 12.3 108 625-759 11-120 (127)
161 1dro_A Beta-spectrin; cytoskel 94.2 0.13 4.4E-06 46.3 8.0 105 627-761 9-120 (122)
162 2rov_A RHO-associated protein 93.5 0.35 1.2E-05 43.2 9.5 106 628-760 3-115 (117)
163 3tca_A Amyloid beta A4 precurs 93.0 0.23 8E-06 51.9 8.8 104 628-760 170-276 (291)
164 4gns_A Chitin biosynthesis pro 92.8 0.17 5.7E-06 47.1 6.2 91 238-328 157-254 (290)
165 3hk0_A Growth factor receptor- 90.0 2.3 7.7E-05 43.5 11.9 107 627-762 133-242 (256)
166 3lju_X ARF-GAP with dual PH do 88.7 1.3 4.4E-05 48.4 9.6 100 627-762 147-248 (386)
167 3qbz_A DDK kinase regulatory s 88.6 0.46 1.6E-05 44.1 4.9 72 145-216 56-147 (160)
168 3oq0_A DBF4, protein DNA52; DD 88.3 0.87 3E-05 41.9 6.5 77 145-221 18-114 (151)
169 3oq4_A DBF4, protein DNA52; DD 86.1 1.2 4.2E-05 40.1 6.0 58 164-221 32-97 (134)
170 4gmv_A RAS-associated and plec 85.6 4.2 0.00015 42.0 10.8 105 628-761 160-267 (281)
171 2ys3_A UNC-112-related protein 85.5 1.6 5.5E-05 39.8 6.6 57 698-760 56-112 (137)
172 1w1g_A HPDK1, 3-phosphoinositi 83.6 28 0.00095 32.2 14.7 95 622-764 48-143 (151)
173 3qbz_A DDK kinase regulatory s 83.5 1.6 5.6E-05 40.4 5.8 51 241-292 57-120 (160)
174 1mai_A Phospholipase C delta-1 80.7 2.2 7.6E-05 38.7 5.7 61 698-763 57-124 (131)
175 3a8n_A TIAM-1, T-lymphoma inva 75.7 3.1 0.00011 43.0 5.6 90 642-763 38-127 (279)
176 3oq4_A DBF4, protein DNA52; DD 73.9 3 0.0001 37.6 4.2 59 257-316 31-97 (134)
177 3a58_A Exocyst complex compone 73.1 87 0.003 32.1 15.1 61 691-764 162-222 (320)
178 4ejn_A RAC-alpha serine/threon 72.9 8.9 0.00031 42.2 9.1 103 625-762 5-110 (446)
179 3hie_A Protein PSL1, exocyst c 71.5 29 0.00099 32.7 10.5 60 691-763 92-151 (171)
180 4f7h_A Fermitin family homolog 67.3 20 0.00068 33.6 8.3 88 640-759 62-149 (173)
181 3oq0_A DBF4, protein DNA52; DD 64.1 5.6 0.00019 36.6 3.9 58 258-316 49-114 (151)
182 1v5m_A SH2 and PH domain-conta 59.3 11 0.00038 33.9 4.8 38 718-761 94-131 (136)
183 3f1i_H Hepatocyte growth facto 56.0 23 0.00079 29.7 5.9 54 414-470 3-56 (98)
184 4bbk_A Kindlin-1, fermitin fam 55.8 42 0.0014 31.2 8.2 88 641-760 42-129 (165)
185 4h3k_B RNA polymerase II subun 45.3 6.7 0.00023 37.9 1.2 127 44-196 19-163 (214)
186 2adz_A Alpha-1-syntrophin; pro 45.0 60 0.0021 30.8 7.8 62 692-760 116-177 (178)
187 2cy5_A Epidermal growth factor 43.2 1E+02 0.0035 28.0 8.7 64 696-763 71-134 (140)
188 3p9y_A CG14216, LD40846P; phos 42.7 7.4 0.00025 37.3 1.1 123 48-196 7-147 (198)
189 1z87_A Alpha-1-syntrophin; pro 36.2 90 0.0031 31.7 8.1 61 693-760 202-262 (263)
190 2coa_A Protein kinase C, D2 ty 33.9 2.5E+02 0.0086 24.9 10.2 100 623-759 5-118 (125)
191 1m3w_A H10H24; four-helix bund 33.5 43 0.0015 21.1 3.0 18 455-472 4-21 (32)
192 3tfm_A Myosin X; split PH doma 26.3 54 0.0019 32.4 4.4 34 717-757 193-226 (228)
193 3nkl_A UDP-D-quinovosamine 4-d 20.3 4.2E+02 0.014 22.9 9.1 91 51-179 5-96 (141)
No 1
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=100.00 E-value=2.9e-50 Score=448.53 Aligned_cols=347 Identities=21% Similarity=0.328 Sum_probs=290.7
Q ss_pred CCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHH
Q psy2293 383 PDNFLATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHK 462 (832)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~ 462 (832)
|...++.+..+.+++++.+|+++++||++||++||++|+.+.+.|+.||... +++++.++..||+||++|+++|+
T Consensus 3 W~~~v~~~~~~~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~ 77 (368)
T 1xcg_A 3 WQHTVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQRMKKE-----NLMPREELARLFPNLPELIEIHN 77 (368)
T ss_dssp TTTSSSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSSSHHHHHHHHH
T ss_pred chhhcCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHhCCHHHHHHHHH
Confidence 4445667778899999999999999999999999999999999999999875 68999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHhHH-----HHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCC
Q psy2293 463 DLLKDLKYLEQNYSDSVSIGEVFVKHCT-----AFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLP 536 (832)
Q Consensus 463 ~fl~~L~~~~~~~~~~~~Ig~vfl~~~~-----~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~ 536 (832)
.|+.+|+.+...|+....||++|+++.. .|+++|..||.|++.|...+..+.++ +.|++|++.++. .+
T Consensus 78 ~fl~~L~~~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~------~~ 151 (368)
T 1xcg_A 78 SWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAES------HP 151 (368)
T ss_dssp HHHHHHHHHHHTCSSCCCCHHHHHHHHSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHT------SG
T ss_pred HHHHHHHHHHhcCCCcCcHHHHHHHHccchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHh------Ch
Confidence 9999999999988888899999999853 56799999999999999999998765 999999999999 89
Q ss_pred CcCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCC-
Q psy2293 537 EIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENC- 615 (832)
Q Consensus 537 ~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~- 615 (832)
.|++++|.+||++|||||+||+|||++|+|+|+++|+||..|++|++.++.++.++|+.+++.|+..++.+++.+|++.
T Consensus 152 ~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~~~~~~e~~~~l~~i~~~l~~~~ 231 (368)
T 1xcg_A 152 QCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATA 231 (368)
T ss_dssp GGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHH
T ss_pred hhccCChHHHhhhHhhhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred ------C-----CccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccc
Q psy2293 616 ------P-----PQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQ 684 (832)
Q Consensus 616 ------~-----~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~ 684 (832)
| .+|..++|+|+++|.+.+... .++.+++|+|||||+||+||++... ..++.... .
T Consensus 232 ~~~~~~pl~~~~~~l~~~~R~li~~G~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~k-~~~~~~~~---------~- 298 (368)
T 1xcg_A 232 LERASNPLAAEFKSLDLTTRKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEK-LLLKCHSK---------T- 298 (368)
T ss_dssp HHSCSCTTTGGGGGCCGGGSCEEEEEEEEECCS--SSCCCEEEEEEESSEEEEEEECSSC-EECCC--------------
T ss_pred hhhcccchhhhhhhcccccceEEeecceEeeec--CCCeeEEEEEcccccHHHhhccccc-ceeeeccc---------c-
Confidence 1 246678999999999986432 3567899999999999999987543 12221110 0
Q ss_pred cCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 685 AKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 685 ~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
..+.....|.++..+||+.+ .|.++. +..++|.++.... .+....|+|+|.+ +.+|+.|+++|.+++.+
T Consensus 299 ~~~~~~~~~~~~~~i~l~~~-~v~~~~-----~~~~~f~i~~~~~-~g~~~~~~l~a~s-~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 299 AVGSSDSKQTFSPVLKLNAV-LIRSVA-----TDKRAFFIICTSK-LGPPQIYELVALT-SSDKNTWMELLEEAVRN 367 (368)
T ss_dssp ---------CCCSEEEGGGE-EEEECS-----SCSSEEEEEECCS-SSTTCEEEEECSS-HHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcccCcCCceEccce-eeeccc-----CCCceEEEEEecC-CCCceEEEEEcCC-HHHHHHHHHHHHHHHhc
Confidence 00011224777778999998 455532 3358898876532 2335789999865 55999999999999875
No 2
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=4.5e-50 Score=451.03 Aligned_cols=330 Identities=21% Similarity=0.350 Sum_probs=290.8
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q psy2293 392 SDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYL 471 (832)
Q Consensus 392 ~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~ 471 (832)
.+++++++.+|+++++||++||++||++|+.+.+.|+.|+... .+++++.++..||+||++|+++|+.||.+|+.+
T Consensus 32 ~~~~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~----~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~ 107 (402)
T 2dfk_A 32 GRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKR----RDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQ 107 (402)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----cCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 5677788999999999999999999999999999999999752 267899999999999999999999999999999
Q ss_pred HhcCCC-CCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhH
Q psy2293 472 EQNYSD-SVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRP 550 (832)
Q Consensus 472 ~~~~~~-~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~P 550 (832)
...|.. ...||++|+++.+.| ++|..||.||+.|...+.++.+++.|..|++.++. .+.+.+++|.+||++|
T Consensus 108 ~~~~~~~~~~ig~ifl~~~~~f-~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~------~~~~~~l~L~s~Li~P 180 (402)
T 2dfk_A 108 YNNDDPHLSEIGPCFLEHQDGF-WIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRL------LQQMIDIAIDGFLLTP 180 (402)
T ss_dssp CCSSCGGGCCCHHHHHHTTTGG-GHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH------HTTCCSCCHHHHHTHH
T ss_pred HccCCCchhhHHHHHHHHHhhh-HHHHHHHHhhHHHHHHHHHHHcChHHHHHHHHHHh------hhhcccCCHHHHHhHH
Confidence 877653 468999999999988 89999999999999999999888999999999998 7888999999999999
Q ss_pred HHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCC-CccccCCCeEEee
Q psy2293 551 VQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP-PQLINSHRSFVLK 629 (832)
Q Consensus 551 vQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~-~~L~~~~R~li~~ 629 (832)
||||+||+|||++|+|+|+++||||..|+.|++.++.++.++|+.+++.|+..++.+++..|+|++ .+++.++|+||++
T Consensus 181 vQRi~rY~LLL~~Llk~t~~~~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~~ 260 (402)
T 2dfk_A 181 VQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYT 260 (402)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSBTCCSSCGGGTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccceEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999875 4688999999999
Q ss_pred eeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEee
Q psy2293 630 CDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYN 709 (832)
Q Consensus 630 g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~ 709 (832)
|.+..+.. ..++.+++++|||||+||+||++... ...|.++..+||+.+ .|.+
T Consensus 261 G~l~~~~~-~~~k~~~r~~fLF~d~Ll~~k~~~~~-------------------------~~~~~~k~~i~l~~~-~v~~ 313 (402)
T 2dfk_A 261 GEMAWIYQ-PYGRNQQRVFFLFDHQMVLCKKDLIR-------------------------RDILYYKGRIDMDKY-EVID 313 (402)
T ss_dssp EEEEEESS-TTCCCEEEEEEEETTEEEEEEECSSC-------------------------TTCEEEEEEEEGGGE-EEEE
T ss_pred ceEEEEec-cCCceEEEEEEeeCCEEEEEEecccc-------------------------CCceEEeeeeeccce-EEEe
Confidence 99998763 23567899999999999999986422 113777888999998 6677
Q ss_pred ecCCCC----cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 710 VEDEAH----DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 710 i~d~~~----~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
+.++.. ....++|.|+.... ...|+|+|.+ +.+|+.|+++|..++.....
T Consensus 314 ~~d~~~~~~~~~~~~~F~i~~~~~----~~~~~l~a~s-~~eK~~Wi~~i~~a~~~~~~ 367 (402)
T 2dfk_A 314 IEDGRDDDFNVSMKNAFKLHNKET----EEVHLFFAKK-LEEKIRWLRAFREERKMVQE 367 (402)
T ss_dssp CCSEECSSSCCEESSEEEEEESSS----SCEEEEECSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccccccccceeEEEEECCC----CeEEEEEeCC-HHHHHHHHHHHHHHHHHHHh
Confidence 665411 12468999987643 4589999865 55999999999999887653
No 3
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=100.00 E-value=6.1e-51 Score=450.11 Aligned_cols=322 Identities=21% Similarity=0.356 Sum_probs=269.8
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q psy2293 392 SDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYL 471 (832)
Q Consensus 392 ~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~ 471 (832)
.+.+++++.||+++++||++||++||++|+.+.+.|+.||... +++++.++..||+|+++|+++|+.||.+|+.+
T Consensus 10 ~~~l~~~~~kR~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~ 84 (346)
T 2z0q_A 10 NQVLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKL-----SIMTEQELNQIFGTLDSLIPLHEELLSQLRDV 84 (346)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999999999999999999999875 67899999999999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHH
Q psy2293 472 EQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPV 551 (832)
Q Consensus 472 ~~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~Pv 551 (832)
...|.....||++|+++.+.| ++|..||.||+.|...+..+.+++.|.+|++.++. .+.|++++|.+||++||
T Consensus 85 ~~~~~~~~~ig~~f~~~~~~~-~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~------~~~~~~l~L~~~L~~Pv 157 (346)
T 2z0q_A 85 RKPDGSTEHVGPILVGWLPCL-SSYDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLE------SPFSRKLDLWNFLDIPR 157 (346)
T ss_dssp CCTTSCCSCCHHHHHHHGGGG-GHHHHHHHHHHHHHHHHHHHTTCHHHHCC-------------------CTTTGGGHHH
T ss_pred hccCCccchHHHHHHHHhhHH-HHHHHHHHCHHHHHHHHHHhhcCHHHHHHHHHHHh------CccCCCCCHHHHHHHHH
Confidence 999988899999999999988 79999999999999999998777999999999998 88999999999999999
Q ss_pred HHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeee
Q psy2293 552 QRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCD 631 (832)
Q Consensus 552 QRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~ 631 (832)
|||+||+|||++|+|+|+++||||..|++|++.++.++.++|+.+++.|+...+..++...++++.+++.++|.|+++|.
T Consensus 158 QRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~iN~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~r~li~~G~ 237 (346)
T 2z0q_A 158 SRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCHGE 237 (346)
T ss_dssp HHHHHHHHHHHHHHHTSCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCSTTCCCHHHHTCCCEEEEEE
T ss_pred HHHhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCeEEEEece
Confidence 99999999999999999999999999999999999999999999999999887776665556677789999999999999
Q ss_pred EEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcce-eEEeecccccceEeee
Q psy2293 632 VIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYK-HIKLLSMTSIKKVYNV 710 (832)
Q Consensus 632 l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk-~~~~i~L~~i~~v~~i 710 (832)
+.. .+++++|+|||||+||+||++....+ ..|+ ++..+||..+ .|.++
T Consensus 238 l~~------~~~~~~~~fLF~d~Ll~~k~~~~~~~------------------------~~~~v~k~~i~l~~l-~v~~~ 286 (346)
T 2z0q_A 238 LKN------NRGVKLHVFLFQEVLVITRAVTHNEQ------------------------LCYQLYRQPIPVKDL-TLEDL 286 (346)
T ss_dssp EEE------TTSCEEEEEEESSEEEEEEEEEETTE------------------------EEEEESSCCEEGGGC-EEEEC
T ss_pred eEE------CCCcEEEEEECCCcEEEEEEeccCCc------------------------eeeeeecCCcchhhc-eeeec
Confidence 875 23579999999999999998653210 1133 3457899988 56776
Q ss_pred cCCC-------------CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 711 EDEA-------------HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 711 ~d~~-------------~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
.++. .+...++|.|++..+ .....|+|+|.+ +.+|+.|+++|.+++
T Consensus 287 ~d~~~~~~~s~~g~~~~~~~~~~~F~i~~~~~--~~~~~~~l~a~s-~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 287 QDGEVRLGGSLRGAFSNNERVKNFFRVSFKNG--SQSQTHSLQAND-TFNKQQWLNCIRQAK 345 (346)
T ss_dssp CTTTSCCCSCC--CCSHHHHTSSEEEEEECCG--GGCEEEEEECSS-HHHHHHHHHHHHHHH
T ss_pred CCCccccCccccccccCCcccccceEEEEecC--CCCceEEEEECC-HHHHHHHHHHHHHhh
Confidence 5531 013468999988654 235789999865 559999999999886
No 4
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=100.00 E-value=8.9e-50 Score=452.12 Aligned_cols=352 Identities=20% Similarity=0.315 Sum_probs=295.1
Q ss_pred CCCCCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHH
Q psy2293 380 TTSPDNFLATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFD 459 (832)
Q Consensus 380 s~s~~~~~~~~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~ 459 (832)
..+|...++.+..+.+++++.|||++++||++||++||++|+.+.++|+.||... +++++.++..||+||++|++
T Consensus 42 ~~~W~~~v~~~~~~~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~I~~ 116 (418)
T 3t06_A 42 AQNWQHTVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQRMKKE-----NLMPREELARLFPNLPELIE 116 (418)
T ss_dssp -CCTTTSSSSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSSSHHHHHH
T ss_pred ccchhhhcCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHHccHHHHHH
Confidence 3455666777778999999999999999999999999999999999999999875 78999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHhHHH-----HhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccC
Q psy2293 460 THKDLLKDLKYLEQNYSDSVSIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDL 533 (832)
Q Consensus 460 ~h~~fl~~L~~~~~~~~~~~~Ig~vfl~~~~~-----f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~ 533 (832)
+|+.||.+|+.+...|.....||++|+++.+. |+++|..||.||+.|...+..+.++ +.|+.|++.++.
T Consensus 117 ~h~~fl~~L~~~~~~~~~~~~ig~ifl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~----- 191 (418)
T 3t06_A 117 IHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAES----- 191 (418)
T ss_dssp HHHHHHHHHHHHGGGCSSCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHhcchhhhHHHhhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHh-----
Confidence 99999999999999998889999999997654 4689999999999999999998765 999999999999
Q ss_pred CCCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Q psy2293 534 GLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIE 613 (832)
Q Consensus 534 ~~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~ 613 (832)
.+.|++++|.+||++|||||+||+|||++|+|+|+++|+||..|++|++.++.++.++|+.+++.|+..++.+++.+|+
T Consensus 192 -~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~ 270 (418)
T 3t06_A 192 -HPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD 270 (418)
T ss_dssp -SGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred -CcccccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC------------CccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCccccccc
Q psy2293 614 NCP------------PQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTY 681 (832)
Q Consensus 614 ~~~------------~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~ 681 (832)
+.. .++..++|+||++|.+.+... .++.+++++|||+|+||+||++... ..++.....
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~r~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~k-~~~~~~~~~------- 340 (418)
T 3t06_A 271 ATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEK-LLLKCHSKT------- 340 (418)
T ss_dssp CCTTSSCSCTTTTTTSSCCGGGSCEEEEEEEEECCB--TTBCCEEEEEEESSEEEEEEECSSC-EECCC-----------
T ss_pred cccccccccccchhhcccccccceeEEeceEEEEeC--CCCeEEEEEEecCCEEEEEEEcCCc-eEEeecccc-------
Confidence 742 245567899999999987642 3567899999999999999987643 222211110
Q ss_pred ccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 682 KTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 682 k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
..+.....|.++..++|+.+ .|.++ ++..++|.|+.... .+....|+|+|.+ ..+|+.|+++|.+++++
T Consensus 341 ---~~~~~~~~~~~k~~i~l~~~-~v~~~-----~~~~~~f~l~~~~~-~~~~~~~~l~A~s-~~ek~~W~~~I~~a~~~ 409 (418)
T 3t06_A 341 ---AVGSSDSKQTFSPVLKLNAV-LIRSV-----ATDKRAFFIICTSK-LGPPQIYELVALT-SSDKNTWMELLEEAVRN 409 (418)
T ss_dssp ------------CCCSEEEGGGE-EEEEC-----SSCSSEEEEEECCS-SSTTCEEEEECSS-HHHHHHHHHHHHHHHHT
T ss_pred ---cccCCCcccccCCceechhc-eeccc-----cccCceEEEEecCC-CCCceEEEEEcCC-HHHHHHHHHHHHHHHhc
Confidence 00011234777778999998 44443 23458999988543 1234699999865 55999999999999987
Q ss_pred hh
Q psy2293 762 VY 763 (832)
Q Consensus 762 ~~ 763 (832)
..
T Consensus 410 ~~ 411 (418)
T 3t06_A 410 AH 411 (418)
T ss_dssp C-
T ss_pred Cc
Confidence 64
No 5
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=100.00 E-value=7.7e-49 Score=438.62 Aligned_cols=348 Identities=21% Similarity=0.264 Sum_probs=277.3
Q ss_pred CCCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHH
Q psy2293 382 SPDNFLATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461 (832)
Q Consensus 382 s~~~~~~~~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h 461 (832)
+|...++.+..+.+++++.||+++++||++||++||++|+.+.+.|+.||... +++++.++..||+||++|+++|
T Consensus 8 ~W~~~v~~~~~~~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~I~~~h 82 (377)
T 3p6a_A 8 GWEELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSLDELIEVH 82 (377)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-----TSSCHHHHHHHSTTHHHHHHHH
T ss_pred hHHHhcCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCCCHHHHHHHHccHHHHHHHH
Confidence 34445566668889999999999999999999999999999999999999875 6899999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCchHHHHHHhHHH-----HhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCC
Q psy2293 462 KDLLKDLKYLEQNYS-DSVSIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLG 534 (832)
Q Consensus 462 ~~fl~~L~~~~~~~~-~~~~Ig~vfl~~~~~-----f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~ 534 (832)
+.||.+|+.+..+|+ ....||++|+++.+. |.++|..||.||+.|...+..+.++ +.|.+|++.++.
T Consensus 83 ~~fl~~L~~~~~~~~~~~~~ig~~fl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~------ 156 (377)
T 3p6a_A 83 SLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAES------ 156 (377)
T ss_dssp HHHHHHHHHHHHHC--CCCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHhccCCCCCcHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHh------
Confidence 999999999887764 467999999999875 6689999999999999999997655 999999999999
Q ss_pred CCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccC
Q psy2293 535 LPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIEN 614 (832)
Q Consensus 535 ~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~ 614 (832)
.+.|++++|.+||++|||||+||+|||++|+|+|++ |+||..|+.|++.++.++.++|+.++++|+..++.+++++|++
T Consensus 157 ~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~iq~~l~~ 235 (377)
T 3p6a_A 157 RPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDL 235 (377)
T ss_dssp SGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_pred CcccCCCCHHHHHHHHHHHhhhHHHHHHHHHhhCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 899999999999999999999999999999999997 8999999999999999999999999999999999999999975
Q ss_pred C------------CCccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccc
Q psy2293 615 C------------PPQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYK 682 (832)
Q Consensus 615 ~------------~~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k 682 (832)
. -.++..++|+||++|.+..... .++.+++|+|||||+||+||++... ..++.+....
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~r~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~k~~k-~~~k~~~~~~------- 305 (377)
T 3p6a_A 236 SHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVT--KDKAVEVHVLLLDDLLLLLQRQDER-LLLKSHSRTL------- 305 (377)
T ss_dssp HHHHHCCCGGGSSSTTCCCTTSCEEEEEEEEEESS--SSCEEEEEEEEESSEEEEEEEETTE-EECCCCCCC--------
T ss_pred ccccccccchhhhhcccccccceEEEECCcEEEec--CCCeEEEEEEeeCCEEEEEEEcCce-eEEeeccccc-------
Confidence 1 1234457899999999977543 3567899999999999999987543 3333322100
Q ss_pred cccCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 683 TQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 683 ~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
. .....+......++|..+ .+.++.+ ..++|.++.... .....|.|.|.+ ..||+.|+++|++++...
T Consensus 306 --~-~~~~~k~~~~~~i~l~~~-~v~e~~~-----~~~~~~~i~~~~--~~~~~~~l~A~s-~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 306 --T-PTPDGKTMLRPVLRLTSA-MTREVAT-----DHKAFYVLFTWD--QEAQIYELVAQT-VSERKNWCALITETAGSL 373 (377)
T ss_dssp -----------CSCSEEEGGGE-EEEECTT-----CTTEEEEEETTC--TTCCEEEEECSS-HHHHHHHHHHHHHHHHTC
T ss_pred --c-cCccccCCCCCeEechhh-hcccccc-----ccceeEEEecCC--CCCeeEEEecCC-HHHHHHHHHHHHHHHHhc
Confidence 0 000112233446888887 4555332 346677666543 245789999866 459999999999999876
Q ss_pred h
Q psy2293 763 Y 763 (832)
Q Consensus 763 ~ 763 (832)
.
T Consensus 374 k 374 (377)
T 3p6a_A 374 K 374 (377)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=100.00 E-value=2.1e-48 Score=446.74 Aligned_cols=329 Identities=20% Similarity=0.359 Sum_probs=287.8
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q psy2293 393 DVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLE 472 (832)
Q Consensus 393 ~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~ 472 (832)
..+++++.+|+++++||++||++||++|+.+.+.|+.|+... .++++..++..||+||++|+.+|+.||.+|+.+.
T Consensus 110 ~~~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~~l~~~----~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~ 185 (466)
T 2pz1_A 110 EAQSSKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKR----ADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRF 185 (466)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----cCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999742 3678999999999999999999999999999988
Q ss_pred hcCC-CCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHH
Q psy2293 473 QNYS-DSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPV 551 (832)
Q Consensus 473 ~~~~-~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~Pv 551 (832)
..|. ....||++|+++.+.| ++|..||.||+.|...+.++.+++.|..|++.++. .+.+.+++|.+||++||
T Consensus 186 ~~~~~~~~~ig~~fl~~~~~f-~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~f~~~~~~------~~~~~~l~L~~~Li~Pv 258 (466)
T 2pz1_A 186 NRERPHLSELGACFLEHQADF-QIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRL------LQKMIDISLDGFLLTPV 258 (466)
T ss_dssp CSSCGGGCCCHHHHHHTHHHH-TTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHTCCSCCHHHHHHHHH
T ss_pred ccCCCccchHHHHHHHhhHHH-HHHHHHHHhhHHHHHHHHHHHhccHHHHHHHHHHH------hhhhccCCHHHHhhhHH
Confidence 7664 3468999999999988 89999999999999999999888999999999988 67888999999999999
Q ss_pred HHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCC-CccccCCCeEEeee
Q psy2293 552 QRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP-PQLINSHRSFVLKC 630 (832)
Q Consensus 552 QRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~-~~L~~~~R~li~~g 630 (832)
|||+||+|||++|+|+|+++|+||..|++|++.|+.++.++|+.+++.|+..++.+++..|++++ .+|+.++|+||++|
T Consensus 259 QRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~li~~G 338 (466)
T 2pz1_A 259 QKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSG 338 (466)
T ss_dssp HHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTCCSSCHHHHCSCEEEEE
T ss_pred HHhhhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccceeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999875 46788999999999
Q ss_pred eEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeee
Q psy2293 631 DVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNV 710 (832)
Q Consensus 631 ~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i 710 (832)
.+..+.. ..++.+++++|||||+||+||++... ...|.++..+||+.+ .|.++
T Consensus 339 ~l~~~~~-~~~~~~~r~~fLF~d~Ll~~k~~~~~-------------------------~~~~~~k~~i~l~~~-~v~~~ 391 (466)
T 2pz1_A 339 ELTRVTQ-PQAKSQQRMFFLFDHQLIYCKKDLLR-------------------------RDVLYYKGRLDMDGL-EVVDL 391 (466)
T ss_dssp EEEEECT-TTCCEEEEEEEEETTEEEEEEECSSC-------------------------TTCEEEEEEEETTTC-EEEEC
T ss_pred eEEEEec-CCCCeeEEEEEEECCEEEEEEecccc-------------------------CCceEEeeeeeccce-EEEeC
Confidence 9998763 23567899999999999999986432 113777888999998 67777
Q ss_pred cCCCC----cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 711 EDEAH----DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 711 ~d~~~----~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
.++.. ....++|.|..... ...|+|+|.+ +.+|+.|+++|..++.....
T Consensus 392 ~d~~~~~~~~~~~~~F~i~~~~~----~~~~~l~a~s-~~eK~~W~~~i~~a~~~~~~ 444 (466)
T 2pz1_A 392 EDGKDRDLHVSIKNAFRLHRGAT----GDSHLLCTRK-PEQKQRWLKAFAREREQVQL 444 (466)
T ss_dssp CSBSCCSSCCCBCEEEEEECSSS----CCEEEEEESS-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccccccccceeEEEEeCCC----CeEEEEEeCC-HHHHHHHHHHHHHHHHHHHh
Confidence 66511 12468899986543 4589999865 55999999999999988764
No 7
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=100.00 E-value=4.4e-48 Score=436.28 Aligned_cols=317 Identities=23% Similarity=0.341 Sum_probs=277.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q psy2293 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYS 476 (832)
Q Consensus 397 ~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~ 476 (832)
+.+.||+++++||++||++||++|+.+.+.|+.||.. +++++++..||+||++|+++|+.||.+|+++...|
T Consensus 21 ~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~-------~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~- 92 (406)
T 2vrw_B 21 TEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR-------FLKPQDMETIFVNIEELFSVHTHFLKELKDALAGP- 92 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT-------TSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSG-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCC-
Confidence 5679999999999999999999999999999999963 68899999999999999999999999999999877
Q ss_pred CCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHh
Q psy2293 477 DSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLG 555 (832)
Q Consensus 477 ~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~ 555 (832)
....||++|+++.+.| ++|..||.||+.|...++.+.++ +.|++|++.++. .+.+++++|.+||++|||||+
T Consensus 93 ~~~~ig~~f~~~~~~~-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~------~~~~~~l~L~~~Li~PvQRi~ 165 (406)
T 2vrw_B 93 GATTLYQVFIKYKERF-LVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQ------RANNGRFTLRDLLMVPMQRVL 165 (406)
T ss_dssp GGTTHHHHHHHHTTGG-GHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH------HHHTTSCCHHHHTTHHHHHHT
T ss_pred CccHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhh------ccccCCcchHHHhhhHHHHHh
Confidence 4578999999999988 89999999999999999998875 999999999998 788999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEEEe
Q psy2293 556 SISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIEL 635 (832)
Q Consensus 556 rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~~~ 635 (832)
||+|||++|+|+| ++|+||..|++|++.++.++..+|+.+++.|+..++.+++..|++++.++..++| ++++|.+...
T Consensus 166 rY~LLL~~llk~t-~~~~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~l~~~gr-li~~G~l~~~ 243 (406)
T 2vrw_B 166 KYHLLLQELVKHT-QDATEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGR-PKIDGELKIT 243 (406)
T ss_dssp THHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEESCSSCGGGGCS-EEEEEEEEEE
T ss_pred hHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCc-ccccccEEEE
Confidence 9999999999999 8999999999999999999999999999999999999999999999888887777 8999999876
Q ss_pred cccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCC
Q psy2293 636 SNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAH 715 (832)
Q Consensus 636 ~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~ 715 (832)
... .++.+++++|||||+||+||++.. .|.++..+||..+ .|.+..++..
T Consensus 244 ~~~-~~~~~~~~~fLF~d~Ll~~k~k~~----------------------------~y~~k~~i~l~~~-~v~~~~~~~~ 293 (406)
T 2vrw_B 244 SVE-RRSKTDRYAFLLDKALLICKRRGD----------------------------SYDLKASVNLHSF-QVRDDSSGER 293 (406)
T ss_dssp CSS-CCSCEEEEEEEESSEEEEEEEETT----------------------------EEEEEEEEETTTE-EEEC------
T ss_pred ecC-CCccceEEEEecCCEEEEEEecCC----------------------------ceEEEEEecccce-eeeecCCCCc
Confidence 532 244689999999999999998632 2777888999998 4555544310
Q ss_pred --cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 716 --DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 716 --~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
....++|.|....+ ...|+|.|.+ +.+|+.|+++|.+++.+....
T Consensus 294 ~~~~~~~~F~i~~~~~----~~~~~l~a~s-~~ek~~W~~~i~~ai~~~~~~ 340 (406)
T 2vrw_B 294 DNKKWSHMFLLIEDQG----AQGYELFFKT-RELKKKWMEQFEMAISNIYPE 340 (406)
T ss_dssp --CTTCEEEEEEETTC----SCEEEEEESS-HHHHHHHHHHHHHHHHHHSCT
T ss_pred cCCccceeeEEEecCC----CceEEEeCCC-HHHHHHHHHHHHHHHhhhhhc
Confidence 12358999987533 4579999865 559999999999999987644
No 8
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=100.00 E-value=5e-48 Score=432.91 Aligned_cols=344 Identities=21% Similarity=0.298 Sum_probs=282.1
Q ss_pred CCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHH
Q psy2293 387 LATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLK 466 (832)
Q Consensus 387 ~~~~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~ 466 (832)
++.+..+.+++++.||+++++||++||++||++|+.+.+.|+.||... +++++.++..||+||++|+++| .||.
T Consensus 10 v~~~~~~~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~~-----~~l~~~~~~~iF~ni~~I~~~h-~fL~ 83 (385)
T 1txd_A 10 VSREVLLGLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSRE-----GILSPSELRKIFSNLEDILQLH-IGLN 83 (385)
T ss_dssp SCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-----TCSCHHHHHHHHTTHHHHHHHH-HHHH
T ss_pred cCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHhcCHHHHHHHH-HHHH
Confidence 555567888999999999999999999999999999999999999875 6899999999999999999999 9999
Q ss_pred HHHHHHhc---CCCCCchHHHHHHhH-----HHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCC
Q psy2293 467 DLKYLEQN---YSDSVSIGEVFVKHC-----TAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPE 537 (832)
Q Consensus 467 ~L~~~~~~---~~~~~~Ig~vfl~~~-----~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~ 537 (832)
+|+.++.. |.....||++|+++. +.|.++|..||.||+.|...+..+.++ +.|++|++.++. .+.
T Consensus 84 ~l~~~~~~~~~~~~~~~ig~~fl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~------~~~ 157 (385)
T 1txd_A 84 EQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAES------NPL 157 (385)
T ss_dssp HHHHHHHTTCTTCCCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHH------SGG
T ss_pred HHHHHHHHhhcCCCcccHHHHHHHHccchhHHHHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHHHHh------Ccc
Confidence 99997654 345678999999996 468799999999999999999997654 999999999999 899
Q ss_pred cCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCC--
Q psy2293 538 IDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENC-- 615 (832)
Q Consensus 538 ~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~-- 615 (832)
|++++|.+||++|||||+||+|||++|+|+|+++ +||..|++|++.++.++..||+.++++|+..+|.+++++|++.
T Consensus 158 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~-~d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~ 236 (385)
T 1txd_A 158 CRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWP-TEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSL 236 (385)
T ss_dssp GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
T ss_pred ccCCChHHHhhhHHhHhhhHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Confidence 9999999999999999999999999999999987 8999999999999999999999999999999999999999852
Q ss_pred -----C-----CccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCccccccccccc
Q psy2293 616 -----P-----PQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQA 685 (832)
Q Consensus 616 -----~-----~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~ 685 (832)
| .++..++|+||++|.+.+... .++.+++|+|||||+||+||++.+.. .++.... ..
T Consensus 237 ~~~~~p~~~~~~~l~~~~R~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~~~-~~~~~~~----------~~ 303 (385)
T 1txd_A 237 KLSEYPNVEELRNLDLTKRKMIHEGPLVWKVN--RDKTIDLYTLLLEDILVLLQKQDDRL-VLRCHSK----------IL 303 (385)
T ss_dssp -------CHHHHTCCGGGSCEEEEEEEEEESS--SSCBCCEEEEEESSEEEEEEEETTEE-ECCC---------------
T ss_pred ccccccchhhhhhcccccceEEEECcEEEEcC--CCCeEEEEEEecCCeeEEEEecCCee-EEeeccc----------cc
Confidence 1 135567899999999986542 25578999999999999999876432 2221100 00
Q ss_pred CCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 686 KHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 686 ~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
.+.....|.++..++++.+ .|.++.+. ..+.|.+..... ....|+|+|.+ +.+|+.|+++|.+++......
T Consensus 304 ~~~~~~~~~~~~~i~l~~~-~v~~~~~d----~~~~f~i~~~~~---~~~~~~l~a~s-~~ek~~W~~~i~~~i~~~~~~ 374 (385)
T 1txd_A 304 ASTADSKHTFSPVIKLSTV-LVRQVATD----NKALFVISMSDN---GAQIYELVAQT-VSEKTVWQDLICRMAASVKEQ 374 (385)
T ss_dssp --------CCCSEEEGGGE-EEEECCC-----CCEEEEEEECSS---CEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCCCceecccc-cccccccC----CceEEEEEEcCC---CceEEEEEcCC-HHHHHHHHHHHHHHHHhccCC
Confidence 0011224667778999988 45554321 235566655432 35789999865 559999999999999988754
No 9
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=442.29 Aligned_cols=319 Identities=22% Similarity=0.273 Sum_probs=267.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q psy2293 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKL----NTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLE 472 (832)
Q Consensus 397 ~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~----~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~ 472 (832)
..+.||+.|++||++||++||++|+.+.+.|+.||.+.. ....++++.+++..||+||++|+++|+.||.+|+.+.
T Consensus 18 e~~~kr~~ii~ELl~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~ 97 (434)
T 3mpx_A 18 GGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERL 97 (434)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999997642 2234678889999999999999999999999999999
Q ss_pred hcCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHH
Q psy2293 473 QNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPV 551 (832)
Q Consensus 473 ~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~Pv 551 (832)
..|.....||++|+++.+.| ++|..||.||+.|...+..+.++ +.|++|++.++. .+.+++++|.+||++||
T Consensus 98 ~~~~~~~~ig~ifl~~~~~~-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~------~~~~~~l~L~s~Li~Pv 170 (434)
T 3mpx_A 98 SNWESQQKVADVFLAREQGF-DHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQ------SVQGGSQTAKHRLLRVV 170 (434)
T ss_dssp HTTTTCCCCTHHHHTTTTTH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT------C------CHHHHHHHHH
T ss_pred HhccCcccHHHHHHHhhHHH-HHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHc------CcccCCCCHHHHHhhhH
Confidence 99999999999999999988 79999999999999999997665 999999999999 89999999999999999
Q ss_pred HHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeee
Q psy2293 552 QRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCD 631 (832)
Q Consensus 552 QRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~ 631 (832)
|||+||+|||++|+|+|+++|+||..|++|++.++.++.++|+.+++.|+..++.+++..|++. .+|+.++|.||++|.
T Consensus 171 QRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~l~~~i~~~-~~l~~~~r~li~~g~ 249 (434)
T 3mpx_A 171 QRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQ-GDLLQPGREFLKEGT 249 (434)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHEETC-CCCCCTTCCEEECCE
T ss_pred HhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccccCCcceEecce
Confidence 9999999999999999999999999999999999999999999999999999999999999996 579999999999999
Q ss_pred EEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeec
Q psy2293 632 VIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVE 711 (832)
Q Consensus 632 l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~ 711 (832)
+..+.. ++.+++++|||||+||+||+++++ .|+++..+||+++ .|.+..
T Consensus 250 l~~~~~---~~~~~r~~fLF~d~Ll~~k~~~~~---------------------------~y~~k~~i~L~~l-~v~~~~ 298 (434)
T 3mpx_A 250 LMKVTG---KNRRPRHLFLMNDVLLYTYPQKDG---------------------------KYRLKNTLAVANM-KVSRPV 298 (434)
T ss_dssp EEEEET---TEEEEEEEEEESSEEEEEEECTTS---------------------------CEEEEEEEEC------CCCC
T ss_pred EEEEeC---CCceEEEEEEECCEEEEEEecCCC---------------------------eEEEEEEEEcCCc-EEEecC
Confidence 988753 346889999999999999986532 2788889999998 333322
Q ss_pred CCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 712 DEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 712 d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
+ ++..+.|.|.. + ...|+|+|.+ +.+|+.|+++|.+++.+...
T Consensus 299 ~---~~~~~~f~i~~--~----~~~~~l~a~s-~~ek~~W~~~i~~ai~e~~~ 341 (434)
T 3mpx_A 299 M---EKVPYALKIET--S----ESCLMLSASS-CAERDEWYGCLSRALPEDYK 341 (434)
T ss_dssp C---TTSCSEEEEEC--S----SCEEEEECSS-HHHHHHHHHHHHHC------
T ss_pred C---CCCCeeEEEec--C----CeEEEEecCC-HHHHHHHHHHHHHHHHHHHh
Confidence 2 34567887743 2 3479999865 55999999999999987543
No 10
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=100.00 E-value=9.2e-48 Score=445.91 Aligned_cols=350 Identities=21% Similarity=0.260 Sum_probs=275.9
Q ss_pred CCCCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHH
Q psy2293 381 TSPDNFLATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDT 460 (832)
Q Consensus 381 ~s~~~~~~~~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~ 460 (832)
.+|...++.+..+.+++++.|||++|+||++||++||++|+.++++|+.||... ++++..++..||+||++|+++
T Consensus 160 ~~W~~~v~~~~~~~l~~~e~kRq~vi~ELi~TE~~YV~~L~~l~~~y~~pl~~~-----~~l~~~~~~~IF~nie~I~~~ 234 (536)
T 3odw_A 160 PGWRELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSLDELIEV 234 (536)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSTTHHHHHHH
T ss_pred chhhHhcCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhhHHHHHHH
Confidence 345555666778899999999999999999999999999999999999999875 689999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCCCchHHHHHHhHHH-----HhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccC
Q psy2293 461 HKDLLKDLKYLEQNY-SDSVSIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDL 533 (832)
Q Consensus 461 h~~fl~~L~~~~~~~-~~~~~Ig~vfl~~~~~-----f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~ 533 (832)
|+.||.+|+++...+ .....||++|+++++. |.++|..||.||+.|...+..+.++ +.|.+|++.++.
T Consensus 235 h~~fL~~L~~~~~~~~~~~~~Igdifl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~----- 309 (536)
T 3odw_A 235 HSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAES----- 309 (536)
T ss_dssp HHHHHHHHHHHHHTC---CCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHcchhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHhh-----
Confidence 999999999988765 4567999999999864 6689999999999999999997765 999999999999
Q ss_pred CCCCcCCCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Q psy2293 534 GLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIE 613 (832)
Q Consensus 534 ~~~~~~~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~ 613 (832)
.+.|++++|.+||++|||||+||+|||++|+|+|++ |+||..|++|++.++.++.+||+.++++|+..+|.+++++|+
T Consensus 310 -~~~~~~l~L~s~Li~PvQRi~rY~LLL~~LlK~T~~-~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~kL~~iq~~L~ 387 (536)
T 3odw_A 310 -RPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLD 387 (536)
T ss_dssp -SGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred -CcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999987 899999999999999999999999999999999999999997
Q ss_pred CCC------------CccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCccccccc
Q psy2293 614 NCP------------PQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTY 681 (832)
Q Consensus 614 ~~~------------~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~ 681 (832)
+.. .++..++|+||++|.+..... .++.+++|+|||+|+||+||++... ..++......
T Consensus 388 ~~~~~~~~~~~i~~~~~ldl~~R~LI~eG~l~~~~~--~~k~~~r~~fLF~D~LL~~k~k~~k-y~~k~~~~~~------ 458 (536)
T 3odw_A 388 LSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVT--KDKAVEVHVLLLDDLLLLLQRQDER-LLLKSHSRTL------ 458 (536)
T ss_dssp CTTTTTC---CCTTSSSCCCTTSCEEEEEEEEEESC--C---CEEEEEEESSEEEEEEEETTE-EECCCC----------
T ss_pred ccccccccccchhhhcccccccceeeeecceEEEec--CCCeeEEEEEEcCCEEEEEEEcCCe-EEEeeccccc------
Confidence 531 124447899999999987653 3467899999999999999987653 2332211000
Q ss_pred ccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 682 KTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 682 k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
. .....++.+...++|..+ .|.++. +..++|.++.... .....|.|+|.+ ..||+.|+++|+++|.+
T Consensus 459 ---~-~~~d~k~~~~~~i~L~~l-~v~e~~-----~d~~~ffli~~~~--~~~~~~~L~A~S-~eEK~~W~~~I~~aI~~ 525 (536)
T 3odw_A 459 ---T-PTPDGKTMLRPVLRLTSA-MTREVA-----TDHKAFYVLFTWD--QEAQIYELVAQT-VSERKNWCALITETAGS 525 (536)
T ss_dssp ------------CCCSEEEGGGE-EEEECT-----TCTTEEEEEEC-----CCCEEEEECSS-HHHHHHHHHHHHHHHHT
T ss_pred ---c-cccccccccCceeecccc-eeeccc-----ccCCceEEEecCC--CCceEEEEECCC-HHHHHHHHHHHHHHHHh
Confidence 0 000123445567899988 555543 3347777776532 235789999866 55999999999999987
Q ss_pred hhc
Q psy2293 762 VYC 764 (832)
Q Consensus 762 ~~~ 764 (832)
...
T Consensus 526 ~~~ 528 (536)
T 3odw_A 526 LKV 528 (536)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 11
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=100.00 E-value=2.5e-47 Score=422.56 Aligned_cols=318 Identities=15% Similarity=0.247 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC---CC
Q psy2293 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYS---DS 478 (832)
Q Consensus 402 Rq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~---~~ 478 (832)
+++|++||++||++||++|+.+.+.|+.||... .+++++.++..||+||++|+.+|+.||.+|+.+...|. ..
T Consensus 4 y~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~----~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~ 79 (354)
T 1dbh_A 4 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVSN----SKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPH 79 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----cCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccccCCcc
Confidence 458999999999999999999999999999863 24789999999999999999999999999999987653 33
Q ss_pred CchHHHHHHhHHH-HhhhhhHHHhhH--HHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHh
Q psy2293 479 VSIGEVFVKHCTA-FKKVYPPFINFF--QDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLG 555 (832)
Q Consensus 479 ~~Ig~vfl~~~~~-f~~~Y~~Y~~n~--~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~ 555 (832)
..||++|+++.+. ++++|..||.|| +.|...+.++.++|.|..|++.+... .+.+++++|.+||++|||||+
T Consensus 80 ~~ig~~f~~~~~~~~f~~Y~~Y~~n~~~~~a~~~l~~~~~~~~f~~~l~~~~~~-----~~~~~~~~L~~~Li~PvQRi~ 154 (354)
T 1dbh_A 80 PLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEG-----FKEAVQYVLPRLLLAPVYHCL 154 (354)
T ss_dssp CCCHHHHHHHHHTTTTHHHHHHHHHHTSTTHHHHHHHHHHSTTHHHHHHHHCTT-----HHHHHHHTHHHHTTHHHHHHH
T ss_pred chHHHHHHHHhHHhhhhHHHHHHHhccchHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHhcCCHHHHHHHHHHHhc
Confidence 7899999999983 238999999999 55679999997779999999874320 456888999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHhHHHHHHHHHhcc
Q psy2293 556 SISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNE----------------------NKQRQDNQRSLFDIYQDIE 613 (832)
Q Consensus 556 rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe----------------------~~~~~E~~~~l~~l~~~i~ 613 (832)
||+|||++|+|+||+ ||||..|++|++.++.++..||+ .+++.|+..++.+++..|+
T Consensus 155 rY~LLL~~llk~t~~-~~d~~~L~~Al~~~~~v~~~in~~~~~~~~~r~~~e~~~~~~~ne~~r~~e~~~~l~~lq~~i~ 233 (354)
T 1dbh_A 155 HYFELLKQLEEKSED-QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNID 233 (354)
T ss_dssp HHHHHHHHHHHHCSC-HHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHTC-------------CTHHHHHHHTTEE
T ss_pred hHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHhc
Confidence 999999999999985 99999999999999999998876 6778888899999999999
Q ss_pred CCCC-ccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCc
Q psy2293 614 NCPP-QLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKT 692 (832)
Q Consensus 614 ~~~~-~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~ 692 (832)
|++. +|..++|.|+++|.+... ++.+++++|||||+||+||++.+... .|+ .....
T Consensus 234 ~~~~~~l~~~~r~li~eG~l~~~-----g~~~~~~~fLF~d~Ll~~k~~~~~~~---~~~---------------~~~~~ 290 (354)
T 1dbh_A 234 GWEGKDIGQCCNEFIMEGTLTRV-----GAKHERHIFLFDGLMICCKSNHGQPR---LPG---------------ASNAE 290 (354)
T ss_dssp SCCSSCGGGTCCCEEEEEEEEET-----TCSSCEEEEEESSEEEEEEECTTCCC---CTT---------------SCCCS
T ss_pred CCCCcccccccceEEEEeeEEEE-----ecCceEEEEEeCCEEEEEecCCCCCC---CCC---------------CCCcc
Confidence 9876 788899999999999886 35788999999999999998753210 010 01345
Q ss_pred ceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 693 YKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 693 yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
|+++..+||+.+ .|.++.++ ++.+++|.|+... ...|+|+|.+ +.+|+.|+++|.++++.
T Consensus 291 y~~k~~i~l~~~-~v~~~~d~--~~~~~~F~i~~~~-----~~~~~l~a~s-~~ek~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 291 YRLKEKFFMRKV-QINDKDDT--NEYKHAFEIILKD-----ENSVIFSAKS-AEEKNNWMAALISLQYR 350 (354)
T ss_dssp EEEEEEEESCSC-EEEECCCS--SSCCSEEEECCTT-----SCCEEEECSS-HHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEeccce-EEEeCCcc--cccCccEEEecCC-----CCEEEEEeCC-HHHHHHHHHHHHHHHhh
Confidence 888999999999 67777776 5678999997643 3479999865 55999999999998764
No 12
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=100.00 E-value=1e-47 Score=411.06 Aligned_cols=263 Identities=24% Similarity=0.401 Sum_probs=238.0
Q ss_pred EEEeecccCcHHHHHHHhhCC-------CceEee--------cCCceEEecCCCCCcccccccccccchhhhCCCCCeEe
Q psy2293 53 ICVCSNVDQTETFKKALASFN-------VPVVLV--------EDPDYFVHAKFDGPIIIVTSEFTNNFLRFHKPPQSRIL 117 (832)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~~~~i~ 117 (832)
+-||++++..+++++|+++.+ ++++.+ ++.++|||++|.|+. |+.|++. +++|+
T Consensus 11 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~F~g~~----------f~~l~~~-~~~iv 79 (298)
T 3olc_X 11 VKFLKSSDNSKCFFKALESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVV----------FDHLKKL-GCRIV 79 (298)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHSCGGGEEEEEHHHHTTCCSCCSCEEECSSSCSHH----------HHHHHHH-TCEEE
T ss_pred EEEhhhccccHHHHHHHHHHHHhcCCcccEEecHHHHhhCCCCCCeEEEecCCCCHH----------HHHHHHC-CCCEE
Confidence 789999999999999999432 456664 334699999999999 9999999 99999
Q ss_pred CHHHHHHHHHhccccccCCCCCCCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCCh
Q psy2293 118 GPTALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGE 197 (832)
Q Consensus 118 gp~~v~~~~~~~~~~~~~lp~~~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~ 197 (832)
||+||.+|+++++ ++|..++|+|+.+|+|++||+||+.+ ++|..|.++|+.|||.+..+++.+||||||++..+.
T Consensus 80 ~p~~v~~c~~~~~----~lp~~~~P~y~~~l~g~~~~~tG~~~-~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~ 154 (298)
T 3olc_X 80 GPQVVIFCMHHQR----CVPRAEHPVYNMVMSDVTISCTSLEK-EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSK 154 (298)
T ss_dssp CHHHHHHHHHTTC----CCCCCSSCBCCCTTTTCEEEEESCCH-HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSH
T ss_pred CHHHHHHHHHhCC----cCCCCCCcccccccCCeEEEeCCCcH-HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCCh
Confidence 9999999999999 99999999999999999999999985 578999999999999999999999999999999999
Q ss_pred hhHHHhhcCCCeeeHHHHHHHHHcCCcCCCCCCChhhhhhhhhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCC
Q psy2293 198 KYKYAMGFRVPVLTKEFVLSAWEKRYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSD 277 (832)
Q Consensus 198 Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~~~~~~~~~~~~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~ 277 (832)
||..|.++|||||+++||.+||..++..++........++|+.++|.|++||++|+...+|..+.++|+.+||+|++...
T Consensus 155 Ky~~A~~~gi~IV~~~Wl~~c~~~~~~~~~~~~~~~~~~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls 234 (298)
T 3olc_X 155 KYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDINMEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLK 234 (298)
T ss_dssp HHHHHHHTTCCEECHHHHHHHHHHHHTTCCSSGGGSCGGGGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCC
T ss_pred HHHHHHHCCCeEeeHHHHHHHHHcCCcCCcccccccccccccccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceec
Confidence 99999999999999999999999988665543222234589999999999999999999999999999999999994443
Q ss_pred CCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcCccccccccccCCCC
Q psy2293 278 EPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGKNF 331 (832)
Q Consensus 278 ~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~~~~~ 331 (832)
..+|||||+....+.|+..|.+||++||+++||++|+++|.++||+.|.+....
T Consensus 235 ~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 235 MNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp TTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGSBSCC--
T ss_pred CCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCchhcCCCCCc
Confidence 379999999999999999999999999999999999999999999999997653
No 13
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=7.9e-46 Score=413.91 Aligned_cols=340 Identities=21% Similarity=0.303 Sum_probs=270.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2293 399 NSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDS 478 (832)
Q Consensus 399 ~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~ 478 (832)
..||+++++||++||++||++|+.+.+.|+.||... ++++++++..||+||++|+++|+.||.+|+.+...|+..
T Consensus 9 ~~kr~~vi~Eli~TE~~Yv~~L~~l~~~y~~pl~~~-----~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~ 83 (377)
T 1foe_A 9 ADKLRKVICELLETERTYVKDLNCLMERYLKPLQKE-----TFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDL 83 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTS-----SSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 579999999999999999999999999999999864 678999999999999999999999999999998877542
Q ss_pred -------------CchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhH
Q psy2293 479 -------------VSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPD 545 (832)
Q Consensus 479 -------------~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~s 545 (832)
..||++|+++.+.| ++|..||.||+.|...+..+.+++.|++|++.++. .+ +++++|.+
T Consensus 84 ~~~~~~~~~~~~~~~ig~~f~~~~~~f-~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~------~~-~~~l~L~s 155 (377)
T 1foe_A 84 EKLEKVDQFKKVLFSLGGSFLYYADRF-KLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNP------RQ-QHSSTLES 155 (377)
T ss_dssp GGCCSGGGGHHHHHHHHHHHHHHTTGG-GGHHHHHHHTTTHHHHHTTTTTCHHHHHHHHHHCT------TC-CGGGSHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHhh------cc-ccCcCHHH
Confidence 36999999999988 89999999999999999988667999999999876 43 78899999
Q ss_pred HhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHhccCCCCc--cccC
Q psy2293 546 LLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDI-YQDIENCPPQ--LINS 622 (832)
Q Consensus 546 lLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l-~~~i~~~~~~--L~~~ 622 (832)
||++|||||+||+|||++|+|+|+++|+||..|+.|++.++.++.+||+.++..|+..++++. ...+.+.+.+ ...
T Consensus 156 ~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe~~r~~e~~~~~~~~l~~~~~~~~~~~~~~~- 234 (377)
T 1foe_A 156 YLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVADLS- 234 (377)
T ss_dssp HTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSCSSCCCC-
T ss_pred HhccchhhhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-
Confidence 999999999999999999999999999999999999999999999999999999998887543 3344443322 233
Q ss_pred CCeEEeeeeEEEecc----cccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEe
Q psy2293 623 HRSFVLKCDVIELSN----MLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKL 698 (832)
Q Consensus 623 ~R~li~~g~l~~~~~----~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~ 698 (832)
.++|+++|.++++.. +..++.+++++|||+|+||+|++..... ..+...... .++ ......|+++..
T Consensus 235 ~g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~-k~~~~~~~~--~s~------~~~~~~y~~k~~ 305 (377)
T 1foe_A 235 MGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQ-KKKLVGSHR--LSI------YEEWDPFRFRHM 305 (377)
T ss_dssp GGGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCS-CCSSCCCTT--TTC------SSCSCSCCCEEE
T ss_pred ccceeeecceeeccCchhhccccccceEEEEEcCCeEEEEecccccc-ccccccccc--ccc------ccCCCceeEeee
Confidence 355888999887642 1124568999999999999876532110 000000000 000 011345888899
Q ss_pred ecccccceEeeecCCCCcccC-ceEEEEecCCc--cccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 699 LSMTSIKKVYNVEDEAHDNDR-QIFALRCRGSD--EVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 699 i~L~~i~~v~~i~d~~~~~~~-~~F~l~~~~~~--~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
+||+.+ .|.++.++ ++.. ..|.|++.... ...+..|+|+|.+ +.+|+.|+++|.+++.+...+
T Consensus 306 i~l~~~-~v~~~~~~--~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s-~~eK~~W~~~i~~~i~~~~~~ 371 (377)
T 1foe_A 306 IPTEAL-QVRALPSA--DAEANAVCEIVHVKSESEGRPERVFHLCCSS-PESRKDFLKSVHSILRDKHRR 371 (377)
T ss_dssp EEGGGE-EEECCCCT--TTTSCCEEEEEECCBTGGGBCCEEEEEEESS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccce-EEEecCCC--ccchhhHHHHHhccccccCCCcceEEEEeCC-HHHHHHHHHHHHHHhhHHhhh
Confidence 999999 67776665 3333 45888765321 2346789999865 559999999999999886643
No 14
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=100.00 E-value=8.6e-46 Score=435.76 Aligned_cols=318 Identities=22% Similarity=0.327 Sum_probs=279.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q psy2293 396 IKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNY 475 (832)
Q Consensus 396 ~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~ 475 (832)
.+.++||+++++||++||++||++|+.+.+.|+.||.. ++++.++..||+||++|+.+|+.||.+|+.+...|
T Consensus 192 ~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~L~~-------~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~ 264 (587)
T 3ky9_A 192 MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR-------FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTP 264 (587)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT-------TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999974 57888899999999999999999999999999987
Q ss_pred CCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHH
Q psy2293 476 SDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRL 554 (832)
Q Consensus 476 ~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi 554 (832)
....||++|+++.+.| ++|..||.||+.|...+..+.++ +.|+.|+++++. .+.+++++|.+||++|||||
T Consensus 265 -~~~~ig~if~~~~~~f-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~------~~~~~~l~L~s~Li~PvQRi 336 (587)
T 3ky9_A 265 -GAANLYQVFIKYKERF-LVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQ------RANNGRFTLRDLLMVPMQRV 336 (587)
T ss_dssp -TTCSHHHHHHHTTTGG-GHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHH------HHHSSSCCHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHhc-chHHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHh------ccccCCCCHHHHHhHHHHHH
Confidence 5688999999999988 89999999999999999998876 999999999999 78899999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEEE
Q psy2293 555 GSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIE 634 (832)
Q Consensus 555 ~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~~ 634 (832)
+||+|||++|+|+|+ +|+||..|+.|++.++.++..+|+.+++.|+..++.+++++|++++..+..++| ++++|.+..
T Consensus 337 ~rY~LLL~~Llk~T~-~~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~l~~~gr-ll~~G~l~~ 414 (587)
T 3ky9_A 337 LKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHYGR-PKIDGELKI 414 (587)
T ss_dssp TTHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEETCCSCGGGGCC-EEEEEEEEE
T ss_pred HHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhcCc-eEEEeeEEE
Confidence 999999999999998 699999999999999999999999999999999999999999999888888888 889999987
Q ss_pred ecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCC
Q psy2293 635 LSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEA 714 (832)
Q Consensus 635 ~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~ 714 (832)
... ..++.+++|+|||+|+||+||++.. .|.++..+||+.+ .|.+..+..
T Consensus 415 ~~~-~~~~~~~r~~fLF~d~Ll~~k~~~~----------------------------~y~~k~~i~L~~~-~v~~~~~~~ 464 (587)
T 3ky9_A 415 TSV-ERRSKMDRYAFLLDKALLICKRRGD----------------------------SYDLKDFVNLHSF-QVRDDSSGD 464 (587)
T ss_dssp ECS-SCCSCEEEEEEEETTEEEEEEEETT----------------------------EEEEEEEEEGGGE-EEEEC----
T ss_pred Eec-cCCCcceEEEEEECCEEEEEEecCC----------------------------EEEeeeeechhhc-eeeecCCCC
Confidence 653 2355789999999999999998731 2788889999998 556654431
Q ss_pred --CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 715 --HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 715 --~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
.....++|.|..... ...|+|.|.+ +.+|+.|+++|.+++.+...+
T Consensus 465 ~~~~~~~~~f~i~~~~~----~~~~~L~A~S-~eeK~~Wi~~I~~ai~~~~~~ 512 (587)
T 3ky9_A 465 RDNKKWSHMFLLIEDQG----AQGYELFFKT-RELKKKWMEQFEMAISNIYPE 512 (587)
T ss_dssp -CCCTTCEEEEEEETTC-------CEEEESS-HHHHHHHHHHHHHHHHHHSCT
T ss_pred cccccccceeEEEEcCC----CceEEEEeCC-HHHHHHHHHHHHHHhhhhccc
Confidence 122458899987643 3579999865 559999999999999987654
No 15
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=100.00 E-value=2e-44 Score=398.31 Aligned_cols=312 Identities=21% Similarity=0.310 Sum_probs=253.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCH---HHHHHHhcCHHHHHHHHH-HHHHHHH
Q psy2293 394 VMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQ---AEMKIIFGDLCPIFDTHK-DLLKDLK 469 (832)
Q Consensus 394 ~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~---~~~~~IF~ni~~I~~~h~-~fl~~L~ 469 (832)
..++.+.||+++++||++||++||++|+.+.+.|+.||..... .++++. +++..||+||++|+++|. .||.+|+
T Consensus 4 ~~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~--~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le 81 (353)
T 1kz7_A 4 EEESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLM--AHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELE 81 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGCTTT--TTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999986421 125664 578999999999999997 7999999
Q ss_pred HHHhcCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhh
Q psy2293 470 YLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIR 549 (832)
Q Consensus 470 ~~~~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~ 549 (832)
.+... ...||++|+++.+.| ++|..||.||+.|..+++.+..+ .|++.++. . .+++++|.+||++
T Consensus 82 ~~~~~---~~~ig~~fl~~~~~f-~~Y~~Y~~n~~~a~~~l~~~~~~----~f~~~~~~------~-~~~~l~L~~~Li~ 146 (353)
T 1kz7_A 82 SCIDC---PELVGRCFLERMEEF-QIYEKYCQNKPRSESLWRQCSDC----PFFQECQK------K-LDHKLSLDSYLLK 146 (353)
T ss_dssp TTTTC---GGGHHHHHHTTTTGG-GHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHH------H-HTCSSCHHHHHTH
T ss_pred HHhcC---HHHHHHHHHHhhHHH-HHHHHHHhChHHHHHHHHHhhcc----hHHHHHHH------h-cCCCCCHHHHHHH
Confidence 98654 368999999999988 89999999999999999988664 56777766 2 3678999999999
Q ss_pred HHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEee
Q psy2293 550 PVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLK 629 (832)
Q Consensus 550 PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~ 629 (832)
|||||+||+|||++|+|+|++ |+|+..|++|++.++.++..+|+.+++ ..|++++.+|...+ +|+++
T Consensus 147 PvQRi~rY~LLL~~llk~t~~-~~d~~~L~~Al~~i~~v~~~iN~~~~~-----------~~i~~~~~~L~~~g-~ll~~ 213 (353)
T 1kz7_A 147 PVQRITKYQLLLKEMLKYSKH-CEGAEDLQEALSSILGILKAVNDSMHL-----------IAITGYDGNLGDLG-KLLMQ 213 (353)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT-STTHHHHHHHHHHHHHHHHHHHHHHHH-----------TTEESCCSCGGGGC-CEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCCChhHhh-hhhee
Confidence 999999999999999999995 799999999999999999999998753 36888888776554 59999
Q ss_pred eeEEEecccccC----------CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEee
Q psy2293 630 CDVIELSNMLSH----------RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLL 699 (832)
Q Consensus 630 g~l~~~~~~~~~----------k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i 699 (832)
|.+..+.....| +++++++|||||+||+||++....... .....|.++..+
T Consensus 214 g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~-------------------~~~~~y~~k~~i 274 (353)
T 1kz7_A 214 GSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGY-------------------EKAPSYSYKQSL 274 (353)
T ss_dssp EEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSC-------------------CCSCEEEEEEEE
T ss_pred cceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCC-------------------CCCCeEEEEEEe
Confidence 999876432222 467999999999999999876321000 001348888899
Q ss_pred cccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 700 SMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 700 ~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
+++.+ .+.+.. ++..+.|.|++.++ ...|+|+|.+ +.+|+.|+++|.+++.+...
T Consensus 275 ~l~~~-~v~e~~----~~~~~~F~i~~~~~----~~~~~l~a~s-~~ek~~W~~~i~~ai~~~~~ 329 (353)
T 1kz7_A 275 NMTAV-GITENV----KGDTKKFEIWYNAR----EEVYIIQAPT-PEIKAAWVNAIRKVLTSQLQ 329 (353)
T ss_dssp EGGGE-EEECCB----TTBTTEEEEEETTT----TEEEEEECSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred Ecccc-eeeEcC----CCCCceEEEEECCC----CcEEEEECCC-HHHHHHHHHHHHHHHHHHHH
Confidence 99998 333322 23569999998654 5689999865 55999999999999977654
No 16
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-43 Score=387.36 Aligned_cols=309 Identities=20% Similarity=0.281 Sum_probs=247.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHhcC
Q psy2293 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKD-LLKDLKYLEQNY 475 (832)
Q Consensus 397 ~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~-fl~~L~~~~~~~ 475 (832)
+...||+++++||++||++||++|+.+.+.|+.||.... .+ ..+ ..++..||+||++|+++|+. ||.+|+.+..++
T Consensus 8 k~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~-~p-~~l-~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~~~ 84 (354)
T 2rgn_B 8 KALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQG-VP-ESL-RGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDP 84 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHC-CC-SSS-GGGHHHHHTTHHHHHHHHHHTHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-hhh-hhhHHHHhhCHHHHHHHHHHHHHHHHHHHHcCH
Confidence 456899999999999999999999999999999998752 11 112 24578999999999999999 999999988654
Q ss_pred CCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHHh
Q psy2293 476 SDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLG 555 (832)
Q Consensus 476 ~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi~ 555 (832)
..||++|+++.+.| ++|..||.||+.|..++.++.+ .|++.+.. +.+++++|.+||++|||||+
T Consensus 85 ---~~ig~~fl~~~~~f-~~Y~~Y~~n~~~a~~~l~~~~~-----~~f~~~~~-------~~~~~l~L~s~Li~PvQRi~ 148 (354)
T 2rgn_B 85 ---DWLAQLFIKHERRL-HMYVVYCQNKPKSEHVVSEFGD-----SYFEELRQ-------QLGHRLQLNDLLIKPVQRIM 148 (354)
T ss_dssp ---GGHHHHHHHTTTTT-HHHHHHHHTSHHHHHHHTTTSH-----HHHHHHHH-------HHCCSSCHHHHTTHHHHHHT
T ss_pred ---HHHHHHHHHhHHHH-HHHHHHHhCcHHHHHHHHHHHH-----HHHHHHHH-------hcCCCCCHHHHhhhHHHHHh
Confidence 68999999999988 8999999999999999987642 34444444 24678999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeEEEe
Q psy2293 556 SISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIEL 635 (832)
Q Consensus 556 rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l~~~ 635 (832)
||+|||++|+|+|+++||||..|++|++.++.++.++|+.++. ..|++++..+. ..++|+++|.+...
T Consensus 149 rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~in~~~~~-----------~~i~~~~~~l~-~~~~Ll~~g~~~v~ 216 (354)
T 2rgn_B 149 KYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCNDMMTL-----------GRLRGFEGKLT-AQGKLLGQDTFWVT 216 (354)
T ss_dssp SHHHHHHHHHHHTSSSCSCHHHHHHHHHHHHHHHHHHHHHHHG-----------GGCBSCCSCST-TSCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCChhhhh-hhccccccceEEEE
Confidence 9999999999999999999999999999999999999997652 46788877655 45679999998765
Q ss_pred ccc----ccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeec
Q psy2293 636 SNM----LSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVE 711 (832)
Q Consensus 636 ~~~----~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~ 711 (832)
... ..++++++++|||||+||+||++..+.. . .....|.++..+||+.+ .+.+..
T Consensus 217 ~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~---~-----------------~~~~~y~~k~~i~l~~~-~v~~~~ 275 (354)
T 2rgn_B 217 EPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVR---G-----------------GTQPGYVYKNSIKVSCL-GLEGNL 275 (354)
T ss_dssp CC-------CCCCEEEEEEESSEEEEEEECC----------------------------CCEEEEEEEEGGGE-EEEESG
T ss_pred cCCcCccccCCCceEEEEEeCCcEEEEEeccCCCC---C-----------------CCCCceEEcceeeccce-eeeecc
Confidence 422 1246789999999999999998764310 0 00124788889999998 333321
Q ss_pred CCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 712 DEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 712 d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
+++.+.|.|++..+. .....|+|+|.+ +.+|+.|+++|.+++....
T Consensus 276 ----~~~~~~F~i~~~~~~-~~~~~~~l~a~s-~~ek~~W~~~i~~ai~~~~ 321 (354)
T 2rgn_B 276 ----QGDPCRFALTSRGPE-GGIQRYVLQAAD-PAISQAWIKHVAQILESQR 321 (354)
T ss_dssp ----GGCTTEEEEEEECSS-SCEEEEEEEESS-HHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCceEEEEecCCC-CCceEEEEECCC-HHHHHHHHHHHHHHHHHHH
Confidence 345699999986542 235789999866 5599999999999998754
No 17
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=100.00 E-value=9.1e-47 Score=438.90 Aligned_cols=342 Identities=21% Similarity=0.315 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHH
Q psy2293 384 DNFLATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKD 463 (832)
Q Consensus 384 ~~~~~~~~~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~ 463 (832)
.+....+.++.+++++.|||++|+||++||++||++|+.+.+.|+.||... ++++..++..||+||++|+++|+.
T Consensus 10 ~~~~~~~~l~~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~ 84 (510)
T 3jzy_A 10 GRENLYFQGDTMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAES-----GFLTEGEMALIFVNWKELIMSNTK 84 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHccCHHHHHHHHHH
Confidence 344566678999999999999999999999999999999999999999864 678889999999999999999999
Q ss_pred HHHHHHHHHhcCC---CCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcC
Q psy2293 464 LLKDLKYLEQNYS---DSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEID 539 (832)
Q Consensus 464 fl~~L~~~~~~~~---~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~ 539 (832)
||.+|+.+...|. ....||++|+++.+.| ++|..||.|++.|...+..+.++ +.|++|++.++. .+.|+
T Consensus 85 fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~~-~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~~------~~~~~ 157 (510)
T 3jzy_A 85 LLKALRVRKKTGGEKMPVQMIGDILAAELSHM-QAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLAS------DPRCK 157 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhccCCCCchhhHHHHHHHHhHHH-HHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHh------Ccccc
Confidence 9999999887553 3578999999999988 89999999999999999988776 999999999999 89999
Q ss_pred CCChhHHhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc--CCCC
Q psy2293 540 KQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIE--NCPP 617 (832)
Q Consensus 540 ~l~L~slLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~--~~~~ 617 (832)
+++|.+||++|||||+||+|||++|+|+|+++|+||..|++|++.++.++.++|+.+++.|+..++.++++.+. |...
T Consensus 158 ~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~l~~~l~~~g~~~ 237 (510)
T 3jzy_A 158 GMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAE 237 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999885 3322
Q ss_pred ccc-------cCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCC
Q psy2293 618 QLI-------NSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPID 690 (832)
Q Consensus 618 ~L~-------~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~ 690 (832)
+++ .++|+|+++|.+.+. ++++++++|||+|+||+|++++...+. ++ ....|. ....
T Consensus 238 ~l~~~~~~~~~~~r~li~eG~l~~~-----~~~~~~~~fLF~d~Ll~~k~~~~~~~~---~g----~~~~f~----~~~~ 301 (510)
T 3jzy_A 238 QLIFNSLTNCLGPRKLLHSGKLYKT-----KSNKELHGFLFNDFLLLTYMVKQFAVS---SG----SEKLFS----SKSN 301 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccceeEEeceEEEc-----CCCcEEEEEcccceeEEeeeccccccc---CC----cccccC----cccc
Confidence 332 468999999999764 346799999999999999976542100 00 000000 0011
Q ss_pred Cccee-EEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 691 KTYKH-IKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 691 ~~yk~-~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
..|+. +..+||+.+ .|.+..|. ++..++|.|+... ..|+|+|++.+ +|+.|+++|.+++....
T Consensus 302 ~~~~v~k~~i~l~~~-~v~~~~d~--~~~~~~F~i~~~~------~~~~l~a~s~~-ek~~W~~~i~~ai~~~~ 365 (510)
T 3jzy_A 302 AQFKMYKTPIFLNEV-LVKLPTDP--SSDEPVFHISHID------RVYTLRTDNIN-ERTAWVQKIKAASEQYI 365 (510)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cceeEEcCceehhhe-EEeccCCC--Cccccceeeeccc------eeEEeccCCHH-HHHHHHHHHHHHHHHHH
Confidence 23543 567899998 56666565 5677999997653 37999987655 99999999999998764
No 18
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=100.00 E-value=3.4e-42 Score=374.23 Aligned_cols=301 Identities=20% Similarity=0.291 Sum_probs=240.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCH---HHHHHHhcCHHHHHHHHHH-HHHHHHHHH
Q psy2293 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQ---AEMKIIFGDLCPIFDTHKD-LLKDLKYLE 472 (832)
Q Consensus 397 ~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~---~~~~~IF~ni~~I~~~h~~-fl~~L~~~~ 472 (832)
++++||+++++||++||++||++|+.+.+.|+.||..... .+++ +++..||+|+++|+++|+. ||.+|+.+.
T Consensus 5 k~~~kR~~vi~El~~TE~~Yv~~L~~l~~~y~~~l~~~~~----~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~ 80 (311)
T 1nty_A 5 KSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVE----EIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYE 80 (311)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS----CCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999986421 2222 4678999999999999996 999999875
Q ss_pred hcCCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHH
Q psy2293 473 QNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQ 552 (832)
Q Consensus 473 ~~~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQ 552 (832)
.. ...||++|+++.+.| ++|..||.||+.|...+.+.. ..|++.++. .+ +.+++|.+||++|||
T Consensus 81 ~~---~~~ig~~f~~~~~~~-~~Y~~Y~~n~~~a~~~l~~~~-----~~f~~~~~~------~~-~~~l~L~~~Li~PvQ 144 (311)
T 1nty_A 81 QL---PEDVGHCFVTWADKF-QMYVTYCKNKPDSTQLILEHA-----GSYFDEIQQ------RH-GLANSISSYLIKPVQ 144 (311)
T ss_dssp TC---GGGTHHHHHHTTTTT-HHHHHHHHHHHHHHHHHHHHT-----TTHHHHHHH------HH-TCSSCHHHHHTHHHH
T ss_pred CC---HHHHHHHHHHHHHHh-HHHHHHHhCcHHHHHHHHHHH-----HHHHHHHHH------hc-cCCCCHHHHhhhhHH
Confidence 43 368999999999988 899999999999999987542 356666666 33 346999999999999
Q ss_pred HHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCccccCCCeEEeeeeE
Q psy2293 553 RLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDV 632 (832)
Q Consensus 553 Ri~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~L~~~~R~li~~g~l 632 (832)
||+||+|||++|+|+|+++|+| +++|++.++.++.++|+.++. ..+++++..+.. .|+|+++|.+
T Consensus 145 Ri~rY~LLL~~llk~t~~~h~~---l~~Al~~~~~v~~~~N~~~~~-----------~~l~~~~~~l~~-~g~li~~~~~ 209 (311)
T 1nty_A 145 RITKYQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRANDAMHL-----------SMLEGFDENIES-QGELILQESF 209 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCTT---HHHHHHHHHHHHHHHHHHHHH-----------TTEESCCSCSGG-GCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCcHH---HHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCCChHh-cCCceeeeeE
Confidence 9999999999999999998876 789999999999999997652 357888766554 5568899998
Q ss_pred EEeccc-ccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeec
Q psy2293 633 IELSNM-LSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVE 711 (832)
Q Consensus 633 ~~~~~~-~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~ 711 (832)
..+... ..++++++++|||+|+||+||+++...+ ...|.++..++++.+ .|.+..
T Consensus 210 ~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~-----------------------~~~y~~k~~i~l~~~-~v~e~~ 265 (311)
T 1nty_A 210 QVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSG-----------------------RSKYLYKSKLFTSEL-GVTEHV 265 (311)
T ss_dssp EEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTC-----------------------CEEEEEEEEEEGGGE-EEECCC
T ss_pred EEEcCcccccccceeEEEeccCeEEEEEeeccCCC-----------------------CceeEEeeeeeccce-eeEEcc
Confidence 776432 2346789999999999999998753210 123778888999998 444433
Q ss_pred CCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 712 DEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 712 d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
+ +..+.|.|+.... ......|+|+|.+ +.+|+.|+++|++++.+.
T Consensus 266 ~----~~~~~F~i~~~~~-~~~~~~~~l~a~s-~~ek~~W~~~i~~~i~e~ 310 (311)
T 1nty_A 266 E----GDPCKFALWVGRT-PTSDNKIVLKASS-IENKQDWIKHIREVIQER 310 (311)
T ss_dssp T----TCTTEEEEEESSS-CCTTTCEEEECSS-HHHHHHHHHHHHHHHHHT
T ss_pred C----CCCceEEEEeCCC-CCCCceEEEECCC-HHHHHHHHHHHHHHHhhh
Confidence 3 3468999988421 2245679999865 559999999999998764
No 19
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=2.6e-42 Score=427.94 Aligned_cols=324 Identities=15% Similarity=0.270 Sum_probs=269.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q psy2293 394 VMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQ 473 (832)
Q Consensus 394 ~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~ 473 (832)
+.+..+.+|+++|+||++||++||++|+.+.+.|+.||... .+++++.++..||+||++|+++|+.||.+|+.+..
T Consensus 193 ~~~~~~~~~revI~ELi~TE~~YV~~L~~l~~~y~~pL~~~----~~~l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~ 268 (1049)
T 3ksy_A 193 PSTSGEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSN----SKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVE 268 (1049)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHC----TTTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 34456778889999999999999999999999999999864 25789999999999999999999999999999998
Q ss_pred cCCC---CCchHHHHHHhHH--HHhhhhhHHHhhH--HHHHHHHHHHHhchHHHHHHHH-HHhccccCCCCCcCCCChhH
Q psy2293 474 NYSD---SVSIGEVFVKHCT--AFKKVYPPFINFF--QDSNSLLKEKEKNSRFLAFLKL-CYMNLRDLGLPEIDKQTLPD 545 (832)
Q Consensus 474 ~~~~---~~~Ig~vfl~~~~--~f~~~Y~~Y~~n~--~~a~~~l~~~~~~~~F~~fl~~-~~~~~~~~~~~~~~~l~L~s 545 (832)
.|.. ...||++|+++++ .| ++|..||.|| +.|...++.+.+++.|..|++. ++. .+.|++++|.+
T Consensus 269 ~~~~~~~~~~IgdiFl~~~~~~~F-~~Y~~Yc~ny~~~~a~~~l~~l~~~~~f~~fl~~~~~~------~~~~~~l~L~s 341 (1049)
T 3ksy_A 269 MTDEGSPHPLVGSCFEDLAEELAF-DPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEG------FKEAVQYVLPR 341 (1049)
T ss_dssp HCCSSSSSCCCHHHHHHHHHTTTT-SHHHHHHHHHHCTTHHHHHHTTSSSTTHHHHHHHHCTT------HHHHHHHTHHH
T ss_pred ccccCCchhhHHHHHHHHHHHhhh-hHHHHHHHhhccHHHHHHHHHHhcChHHHHHHHHHHhh------hhhhhcCChHH
Confidence 7644 4789999999977 45 7999999997 8889999999877999999998 444 56788999999
Q ss_pred HhhhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHhHH
Q psy2293 546 LLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNE----------------------NKQRQDNQR 603 (832)
Q Consensus 546 lLi~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe----------------------~~~~~E~~~ 603 (832)
||++|||||+||+|||++|+|+|+ +|+||..|++|++.++.++..||+ .+++.|+..
T Consensus 342 ~LikPvQRI~rY~LLL~~LlK~Tp-~~~D~~~L~~Al~~i~~v~~~VNe~~~~~~~k~r~~e~~~~~~~n~~kr~~e~~~ 420 (1049)
T 3ksy_A 342 LLLAPVYHCLHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIK 420 (1049)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTHHHHHHHHHHTTSTTHHHHHHHHC-------------CCS
T ss_pred HHHHHHHHHhHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999998 559999999999999999999997 345677888
Q ss_pred HHHHHHHhccCC-CCccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccc
Q psy2293 604 SLFDIYQDIENC-PPQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYK 682 (832)
Q Consensus 604 ~l~~l~~~i~~~-~~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k 682 (832)
++.+++..++++ ..++..++|+|+++|.+.+.+ +++++|+|||||+||+||+++.+... ++
T Consensus 421 ~l~~lq~~i~~~~~~~l~~~~r~Li~eG~l~~~~-----~k~~r~~FLF~D~Ll~~K~~~~~~~~---~g---------- 482 (1049)
T 3ksy_A 421 KMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVG-----AKHERHIFLFDGLMICCKSNHGQPRL---PG---------- 482 (1049)
T ss_dssp HHHHHHHTSSSCCSSCGGGTCSCCCCEEEEEETT-----CSSCEEEEEETTEEEEEECCTTCCCC---TT----------
T ss_pred HHHHHHHHhhcCCccccccccceEEEeceEEEEc-----cCceEEEEeeCCeEEEEEecCccCCC---CC----------
Confidence 999999999997 456888999999999998754 34899999999999999987643110 00
Q ss_pred cccCCCCCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 683 TQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 683 ~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
.....|.++..++++.+ .|.++.++ +...++|.|.... ...|+|+|.+ +.+|++|+++|..++..
T Consensus 483 -----~~~~~y~~k~~i~L~~l-~V~~~~d~--~~~~~~F~I~~~~-----~~~~~L~A~S-~eeK~~Wi~~I~~~q~k 547 (1049)
T 3ksy_A 483 -----ASNAEYRLKEKFFMRKV-QINDKDDT--NEYKHAFEIILKD-----ENSVIFSAKS-AEEKNNWMAALISLQYR 547 (1049)
T ss_dssp -----SCCCSCCCCCEECCSSC-CCCCCCCS--SSCCSEEEECCTT-----SCCEEEECSS-HHHHHHHHHHHHHHHHH
T ss_pred -----CCCCceEEEEEEEcCce-EEEECCCC--ccccceEEEEcCC-----CCEEEEeCCC-HHHHHHHHHHHHHHHHH
Confidence 01234788889999999 56676666 5678899986543 2589999865 55999999999987754
No 20
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=100.00 E-value=4.5e-36 Score=321.86 Aligned_cols=207 Identities=26% Similarity=0.416 Sum_probs=190.4
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q psy2293 392 SDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYL 471 (832)
Q Consensus 392 ~~~~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~ 471 (832)
.+.+++.+.||+++++||++||++||++|+.+.+.|+.||... ++++..++..||+|+++|+.+|+.||.+|+.+
T Consensus 73 ~~~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~ 147 (283)
T 3jv3_A 73 LDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLTES-----ELLTEKEVAMIFVNWKELIMCNIKLLKALRVR 147 (283)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHTT-----CSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc-----CCCCHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999999999999999999865 68999999999999999999999999999998
Q ss_pred HhcCC---CCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc-hHHHHHHHHHHhccccCCCCCcCCCChhHHh
Q psy2293 472 EQNYS---DSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN-SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLL 547 (832)
Q Consensus 472 ~~~~~---~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~-~~F~~fl~~~~~~~~~~~~~~~~~l~L~slL 547 (832)
...|. ....||++|+++.+.| ++|..||.|++.+...+..+.++ +.|++|++.++. .+.|++++|.+||
T Consensus 148 ~~~~~~~~~~~~ig~~f~~~~~~~-~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~~~~------~~~~~~l~L~s~L 220 (283)
T 3jv3_A 148 KKMSGEKMPVKMIGDILSAQLPHM-QPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAM------DPRCKGMPLSSFI 220 (283)
T ss_dssp HHHHCTTCCCCCCHHHHHHHGGGG-THHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTT------SGGGTTCCHHHHT
T ss_pred HhccccCCchhHHHHHHHHHHhhc-hhHHHHHcCHHHHHHHHHHHHhcCHHHHHHHHHHHh------CccccCCCHHHHh
Confidence 76443 4578999999999987 79999999999999999997766 999999999999 8999999999999
Q ss_pred hhHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2293 548 IRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQ 610 (832)
Q Consensus 548 i~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~ 610 (832)
++|||||+||+|||++|+|+|+++|+||..|+.|++.++.++.++|+.+++.|+..+|.+||+
T Consensus 221 i~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe~~r~~e~~~~l~~iQs 283 (283)
T 3jv3_A 221 LKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQA 283 (283)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-----
T ss_pred hhhHHHhcchHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999988763
No 21
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=100.00 E-value=1.8e-36 Score=309.76 Aligned_cols=194 Identities=18% Similarity=0.292 Sum_probs=180.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Q psy2293 395 MIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQN 474 (832)
Q Consensus 395 ~~~~~~kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~ 474 (832)
.+.+..+|+++++||++||++||++|+.+.+.|+.||... +++++.++..||+|+++|+.+|+.|+.+|+.+...
T Consensus 7 ~~~~~~~R~~vi~ELi~TE~~Yv~~L~~l~~~y~~pl~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~ 81 (209)
T 1by1_A 7 TAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTS-----EKLSSANISYLMGNLEEICSFQQMLVQSLEECTKL 81 (209)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----SSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcC
Confidence 3456688999999999999999999999999999999864 57888999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhchHHHHHHHHHHhccccCCCCCcCCCChhHHhhhHHHHH
Q psy2293 475 YSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRL 554 (832)
Q Consensus 475 ~~~~~~Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi~PvQRi 554 (832)
|.....||++|+++.+.|.++|..||.||+.|...+.++ ++.|++|++.++. +.+++++|.+||++|||||
T Consensus 82 ~~~~~~ig~~f~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~--~~~f~~fl~~~~~-------~~~~~l~L~s~Li~PvQRi 152 (209)
T 1by1_A 82 PEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEH--SEELGEFMETKGA-------SSPGILVLTTGLSKPFMRL 152 (209)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTHHHHTTTTCC-------CSSTTTHHHHHTTSTTTGG
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHhcC-------CCCCcCCHHHHhhHHHHHH
Confidence 988899999999999999559999999999999999887 5789999988754 5678899999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy2293 555 GSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQ 602 (832)
Q Consensus 555 ~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~ 602 (832)
+||+|||++|+|+|+++||||..|+.|++.++.++..||+.+++.|+.
T Consensus 153 ~rY~LLL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~ 200 (209)
T 1by1_A 153 DKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELE 200 (209)
T ss_dssp GTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888764
No 22
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.91 E-value=4.8e-24 Score=217.72 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=142.0
Q ss_pred ceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEecc---CCChhhHHHhhcCCCeeeHHHHHHHHHcCCcCC
Q psy2293 150 NIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANC---VSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVN 226 (832)
Q Consensus 150 g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~---~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~ 226 (832)
+++||+||+. .+++..|.++++.|||.+..+++..|||||+.+ ..+.||..|...|++||+++||.+|++.+..++
T Consensus 2 ~~vi~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~ 80 (210)
T 2nte_A 2 PLVLIGSGLS-SEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQ 80 (210)
T ss_dssp CCEEEESSCC-HHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCC
T ss_pred CEEEEECCCC-HHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCC
Confidence 7899999999 466899999999999999999999999999987 689999999999999999999999999998776
Q ss_pred CCCC---Chhh-----hhhhhhcccccceEEecC-CChhhHHHHHHHHHhCCCEeecCC---------------------
Q psy2293 227 FKAD---EPSF-----MNQYKLKLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSS--------------------- 276 (832)
Q Consensus 227 ~~~~---~~~~-----~~~~~~~~F~g~~i~~~g-~~~~e~~~l~~li~~~GG~~~~~~--------------------- 276 (832)
+... +... ...+..++|.|+.||++| +....+..|.++|+.+||++....
T Consensus 81 e~~y~~~~~~~~~r~~~~~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~ 160 (210)
T 2nte_A 81 EEKYEIPEGPRRSRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPD 160 (210)
T ss_dssp GGGTBCTTHHHHHHHHHHTTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTT
T ss_pred hhhccCCCCChhhhhccccccccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCC
Confidence 5421 1110 011335789999999997 677889999999999999998411
Q ss_pred -CCCCceEEEEeCCCCccc-ccccCCCCeEeechhHHHhHhcCcccccc
Q psy2293 277 -DEPLTTHVVVDDSKVTCM-PNVPCTSTYVVKARWFWMSIQNSECADES 323 (832)
Q Consensus 277 -~~~~~THlI~~~~~~~k~-~~a~~~~i~iV~~~Wl~~si~~g~~~~E~ 323 (832)
....|||+|+.++..+.. ..+..+++++|+++||+|||..+.+++.+
T Consensus 161 ~~~~~~t~~iv~~~~~~~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 161 SDQRFCTQYIIYEDLCNYHPERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp CGGGTCCEEEEECSCSSCCCSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred cccccceEEEEeccccccCHHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 114689999988654332 33566899999999999999999887754
No 23
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.91 E-value=4.1e-24 Score=221.42 Aligned_cols=184 Identities=17% Similarity=0.210 Sum_probs=138.8
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC------CChhhHHHhhcCCCeeeHHHHHHHH
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV------SGEKYKYAMGFRVPVLTKEFVLSAW 219 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~------~~~Ky~~A~~~~i~IV~~~Wv~dc~ 219 (832)
.+|.+++||+||+.+ +++..|.++++.+||.+..+++..|||||+.+. .+.||..|+..|++||+++||.+|+
T Consensus 3 ~~~~~~~i~~sg~~~-~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 3 RAERDISMVVSGLTP-KEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCCEEEEESCCH-HHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCCeEEEEcCCCH-HHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 478999999999994 557899999999999999999999999999985 6899999999999999999999999
Q ss_pred HcCCcCCCCCC---Chh----------hhhhhhhcccccceEEecC-CChhhHHHHHHHHHhCCCEeecCCCC----CCc
Q psy2293 220 EKRYDVNFKAD---EPS----------FMNQYKLKLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDE----PLT 281 (832)
Q Consensus 220 ~~~~~~~~~~~---~~~----------~~~~~~~~~F~g~~i~~~g-~~~~e~~~l~~li~~~GG~~~~~~~~----~~~ 281 (832)
+.+..+++... ... ....++.++|.|+.||++| |....+..|.++|+.+||++...... ..+
T Consensus 82 ~~~~~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~ 161 (229)
T 1l0b_A 82 QERKLLSVHEFEVKGDVVTGSNHQGPRRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGA 161 (229)
T ss_dssp TTTSCCCSGGGBCCEETTTCSSSCHHHHHHHHC--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSS
T ss_pred HCCCcCChHHeEeccccccccccccchhhhhhhhhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCC
Confidence 99987665321 100 0112446799999999987 77778999999999999999944322 136
Q ss_pred eEEEEeC-C---CCccccc-ccCCCCeEeechhHHHhHhcCccccccccccCCC
Q psy2293 282 THVVVDD-S---KVTCMPN-VPCTSTYVVKARWFWMSIQNSECADESKYLFGKN 330 (832)
Q Consensus 282 THlI~~~-~---~~~k~~~-a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~~~~ 330 (832)
+|+|+-. . ...+++. +..++++||+++||+|||..+..++++.|++...
T Consensus 162 ~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~ 215 (229)
T 1l0b_A 162 HPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAYLVQNI 215 (229)
T ss_dssp CCEEEEC-------------------CEEETHHHHHHHHTTSCCCGGGGBCC--
T ss_pred ceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCCccceEcccc
Confidence 7755533 2 2344443 3568999999999999999999999999988653
No 24
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.90 E-value=1.8e-23 Score=214.33 Aligned_cols=181 Identities=17% Similarity=0.219 Sum_probs=142.3
Q ss_pred CCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC------CChhhHHHhhcCCCeeeHHHHHHHHHc
Q psy2293 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV------SGEKYKYAMGFRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 148 ~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~------~~~Ky~~A~~~~i~IV~~~Wv~dc~~~ 221 (832)
.+|++||+||+. .++++.+.++++.|||.+..+++..|||||+.+. .+.||..|...|++||+++||.||++.
T Consensus 2 ~~~~~~~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~ 80 (214)
T 1t15_A 2 NKRMSMVVSGLT-PEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKE 80 (214)
T ss_dssp --CCEEEEESCC-HHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHT
T ss_pred CCcEEEEECCCC-HHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHC
Confidence 478999999998 4667899999999999999999999999999985 489999999999999999999999999
Q ss_pred CCcCCCCC---CChh--------h---hhhhhhcccccceEEecC-CChhhHHHHHHHHHhCCCEeecCCCCCC---ceE
Q psy2293 222 RYDVNFKA---DEPS--------F---MNQYKLKLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDEPL---TTH 283 (832)
Q Consensus 222 ~~~~~~~~---~~~~--------~---~~~~~~~~F~g~~i~~~g-~~~~e~~~l~~li~~~GG~~~~~~~~~~---~TH 283 (832)
+..+++.. .++. . ......++|.|+.||++| +....+..|.++|+.+||++........ .+|
T Consensus 81 ~~~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~ 160 (214)
T 1t15_A 81 RKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVH 160 (214)
T ss_dssp TSCCCGGGGBCCEETTTBTTCCHHHHHHTCTTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCC
T ss_pred CCcCChHHeEeeccccccccccchhhHhhcCCCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCc
Confidence 98765432 1110 0 011346799999999987 7777799999999999999994332211 224
Q ss_pred -EEEeCCCC----ccc-ccccCCCCeEeechhHHHhHhcCccccccccccCC
Q psy2293 284 -VVVDDSKV----TCM-PNVPCTSTYVVKARWFWMSIQNSECADESKYLFGK 329 (832)
Q Consensus 284 -lI~~~~~~----~k~-~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~~~ 329 (832)
+|+..... .++ ..|..+++++|+++||.|||..+.+++++.|.+..
T Consensus 161 ~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 161 PIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp EEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred cEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCcceeecc
Confidence 54443211 133 34677999999999999999999999999998853
No 25
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.90 E-value=5.4e-24 Score=191.51 Aligned_cols=95 Identities=35% Similarity=0.598 Sum_probs=87.5
Q ss_pred hhhhhhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhH
Q psy2293 235 MNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSI 314 (832)
Q Consensus 235 ~~~~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si 314 (832)
.+.|++|+|+||+||++||++.+|..|+++|+.+||+|+ ..++++|||||+....+.|++.|.+|+++||+++||||||
T Consensus 14 ~~~~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~-~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi 92 (112)
T 3l46_A 14 LYFQGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYL-PLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSI 92 (112)
T ss_dssp ----CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEEC-CTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHH
T ss_pred ccccCCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEEC-cccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHH
Confidence 458999999999999999999999999999999999999 6679999999999999999999999999999999999999
Q ss_pred hcCccccccccccCCC
Q psy2293 315 QNSECADESKYLFGKN 330 (832)
Q Consensus 315 ~~g~~~~E~~Y~~~~~ 330 (832)
++|.++||+.|.++..
T Consensus 93 ~~g~~ldE~~Y~~~~~ 108 (112)
T 3l46_A 93 QMDARAGETMYLYEKA 108 (112)
T ss_dssp HHTSCCCGGGSBCCC-
T ss_pred HcCCccChhhceeccC
Confidence 9999999999999764
No 26
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.89 E-value=6.4e-23 Score=206.60 Aligned_cols=169 Identities=15% Similarity=0.177 Sum_probs=139.4
Q ss_pred eEEEEcCCCChHhHHHHHHHHHhcCC-EEEeecCcceeEEEeccC-CChhhHHHhhcCCCeeeHHHHHHHHHcCCcCCCC
Q psy2293 151 IVICITGFRNKQETMKLIDITKHMGG-KLRKEMNYQVTHLIANCV-SGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFK 228 (832)
Q Consensus 151 ~~i~~tg~~~~~~~~~l~~~v~~~GG-~~~~~l~~~~THLIa~~~-~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~~ 228 (832)
.++++||++ .++++.|.++|..+|| .+..+++..||||||.+. .+.||..|+..|++||+++||.+|++.+..+++.
T Consensus 12 ~~~~~sgl~-~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~ 90 (199)
T 3u3z_A 12 RTLVMTSMP-SEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEE 90 (199)
T ss_dssp CEEEEESCC-HHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCSG
T ss_pred eEEEEcCCC-HHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCChh
Confidence 489999999 5667899999999988 788999999999999985 8999999999999999999999999999876643
Q ss_pred C---CChhh------------hhhhhhcccccc-eEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCc
Q psy2293 229 A---DEPSF------------MNQYKLKLFQGA-KVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVT 292 (832)
Q Consensus 229 ~---~~~~~------------~~~~~~~~F~g~-~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~ 292 (832)
. .++.. ...++.++|.|+ .+|++++....+..|.++|+.+||++.... ..++++|. .
T Consensus 91 ~y~~~~~~~~~~~~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~--~~~~iiI~-~---- 163 (199)
T 3u3z_A 91 PFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVP--RQASIVIG-P---- 163 (199)
T ss_dssp GGBCTTTCTHHHHHHHHHHHCSSSCCCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSG--GGCSEEES-C----
T ss_pred hccccCCccccccchhhhhhhcccccchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccC--CCCEEEEe-C----
Confidence 2 22111 013457899999 588899988889999999999999999333 34555553 3
Q ss_pred ccccccCCCCeEeechhHHHhHhcCccccccccccC
Q psy2293 293 CMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFG 328 (832)
Q Consensus 293 k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~~ 328 (832)
+..+..+++++|+++||+|||..+..+++++|++.
T Consensus 164 -~~~~~~~~~~~V~p~Wi~DsI~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 164 -YSGKKKATVKYLSEKWVLDSITQHKVCAPENYLLS 198 (199)
T ss_dssp -CCSCCCTTCEEECHHHHHHHHHHTSCCCGGGGBCC
T ss_pred -CchhccCCCcEEChhHHHHHHHcCCcCChHhccCC
Confidence 22356799999999999999999999999999874
No 27
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.88 E-value=2.4e-22 Score=204.63 Aligned_cols=179 Identities=13% Similarity=0.194 Sum_probs=141.5
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC-CChhhHHHhhcCCCeeeHHHHHHHHHcCCc
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV-SGEKYKYAMGFRVPVLTKEFVLSAWEKRYD 224 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~-~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~ 224 (832)
....+++||+||+.+.+ +.++|+.|||.+..+++. ||||||.+. .+.||..|+..|+|||+++||.+|++.+..
T Consensus 8 ~~~~~~~v~~sG~~~~~----~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~ 82 (209)
T 2etx_A 8 QESTAPKVLFTGVVDAR----GERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFF 82 (209)
T ss_dssp ----CCEEEECSSCCHH----HHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSC
T ss_pred ccCCCcEEEEeCCCcHH----HHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcCCC
Confidence 35689999999999633 468899999999999985 999999976 699999999999999999999999999976
Q ss_pred CCC---CCCChhhhhhhh------------hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCC--ceEEEEe
Q psy2293 225 VNF---KADEPSFMNQYK------------LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPL--TTHVVVD 287 (832)
Q Consensus 225 ~~~---~~~~~~~~~~~~------------~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~--~THlI~~ 287 (832)
+++ ...++.....|. .++|.|+.|++++.....+..|.++|+.+||++. ...... .+|+|+.
T Consensus 83 l~e~~y~~~~~~~~~~~~~~l~~~~~~a~~~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~-~~~~~~~~~~~ivI~ 161 (209)
T 2etx_A 83 LPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYL-PSMPRSYKPQRVVIT 161 (209)
T ss_dssp CCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEEC-SSCCCSCCTTEEEEC
T ss_pred CChhhccccChhhhhhcCCCHHHHHhhhhhCCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEE-CCCCCCCCCceEEEE
Confidence 654 334444332221 3789999999999887788999999999999999 433332 3677775
Q ss_pred CC-CCcccccccCCCCeEeechhHHHhHhcCccccccccccCCCC
Q psy2293 288 DS-KVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGKNF 331 (832)
Q Consensus 288 ~~-~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~~~~~ 331 (832)
.. ...++..+.+++++||+.+||++||..+. +|++.|.+....
T Consensus 162 ~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~-ld~e~y~l~~~~ 205 (209)
T 2etx_A 162 CPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQE-AKPEAFVLSPLE 205 (209)
T ss_dssp CGGGGGGCHHHHHHTCCEECTHHHHHHHHHTC-CCGGGGBCCTTC
T ss_pred CcccHHHHHHHHHCCCeEEcHHHHHHHHHhcc-cChHHheecCCC
Confidence 43 33455566778999999999999999965 599999997643
No 28
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.87 E-value=4.1e-22 Score=209.56 Aligned_cols=180 Identities=17% Similarity=0.239 Sum_probs=137.3
Q ss_pred ccCCCceEEEE-cCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcC-CCeeeHHHHHHHHHcC
Q psy2293 145 CHSMQNIVICI-TGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFR-VPVLTKEFVLSAWEKR 222 (832)
Q Consensus 145 ~~~~~g~~i~~-tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~-i~IV~~~Wv~dc~~~~ 222 (832)
+.+|+|++||+ +|... ..++.|..+|..+||.+..++++.+||+||.... .||..|.++| ++||+|+||.||++++
T Consensus 8 s~lF~G~~f~V~sg~~~-~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~-~k~~~~~~~g~~~IV~p~Wv~Dci~~~ 85 (263)
T 3ii6_X 8 SNIFEDVEFCVMSGTDS-QPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSEN-IRVKNIILSNKHDVVKPAWLLECFKTK 85 (263)
T ss_dssp CCTTTTCEEEECCCC---CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSCC-HHHHHHHHSCSCCEECHHHHHHHHHHT
T ss_pred cccCCCeEEEEEcCCCC-CCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCCC-HHHHHHHhcCCCCEeehHHHHHHHhcC
Confidence 45899999998 57653 4478999999999999999999998888997654 8999999987 9999999999999988
Q ss_pred CcCCCC-----------------------------------------CC-----Ch--------hhhhh-----hhhccc
Q psy2293 223 YDVNFK-----------------------------------------AD-----EP--------SFMNQ-----YKLKLF 243 (832)
Q Consensus 223 ~~~~~~-----------------------------------------~~-----~~--------~~~~~-----~~~~~F 243 (832)
..+++. .. .+ .+... .+.-.|
T Consensus 86 ~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lF 165 (263)
T 3ii6_X 86 SFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMF 165 (263)
T ss_dssp SCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGTT
T ss_pred CcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcchhh
Confidence 655431 00 00 00000 123479
Q ss_pred ccceEEecCCC----------hhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCc--cc---ccccCCCCeEeech
Q psy2293 244 QGAKVNFFGFS----------EEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVT--CM---PNVPCTSTYVVKAR 308 (832)
Q Consensus 244 ~g~~i~~~g~~----------~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~--k~---~~a~~~~i~iV~~~ 308 (832)
.||+|+|.++. ......++.++..+||+++ ..++..+||+|+...... .+ ......+++||+++
T Consensus 166 ~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~-~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~iV~~~ 244 (263)
T 3ii6_X 166 RRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVV-SCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKES 244 (263)
T ss_dssp TTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEE-SSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEEEETH
T ss_pred CCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEe-cCCCCCceEEEECCCCccHHHHHHHHhhcCCCCEEeChH
Confidence 99999998763 2234456899999999999 667778999999874321 11 12233578999999
Q ss_pred hHHHhHhcCcccccccccc
Q psy2293 309 WFWMSIQNSECADESKYLF 327 (832)
Q Consensus 309 Wl~~si~~g~~~~E~~Y~~ 327 (832)
|+++|++.|.++||+.|.+
T Consensus 245 Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 245 WVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp HHHHHHHTTSCCCGGGTBC
T ss_pred HHHHHHHcCCcCCHhhCCC
Confidence 9999999999999999975
No 29
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.87 E-value=1.6e-22 Score=182.96 Aligned_cols=101 Identities=33% Similarity=0.614 Sum_probs=93.3
Q ss_pred hhhhhhhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHh
Q psy2293 234 FMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMS 313 (832)
Q Consensus 234 ~~~~~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~s 313 (832)
+.++|++|+|.||+||++||+..+|..|+++|+.+||+|+ ..++.+|||||++...+.|++.|.+|+++||+++|||||
T Consensus 4 ~~~~~~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~-~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~ds 82 (109)
T 2cou_A 4 GSSGFKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYL-PVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGS 82 (109)
T ss_dssp CCCSSCCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCC-CTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHH
T ss_pred ccccccCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEe-cccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHH
Confidence 4568999999999999999999999999999999999999 778999999999999999999999999999999999999
Q ss_pred HhcCccccccccccCCCCCCCch
Q psy2293 314 IQNSECADESKYLFGKNFRTPDR 336 (832)
Q Consensus 314 i~~g~~~~E~~Y~~~~~~~~p~~ 336 (832)
+++|.++||+.|.+... ++|+-
T Consensus 83 i~~g~~ldE~~Y~~~~~-~tp~~ 104 (109)
T 2cou_A 83 IQMDARAGETMYLYEKA-NTPES 104 (109)
T ss_dssp HHTTSCCCGGGTBCCCC-CCSCS
T ss_pred HHcCCcCChhccCCCCC-CCCCC
Confidence 99999999999999763 34443
No 30
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=195.99 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=141.5
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC-CChhhHHHhhcCCCeeeHHHHHHHHHcCCc
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV-SGEKYKYAMGFRVPVLTKEFVLSAWEKRYD 224 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~-~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~ 224 (832)
+.+.|++||+||+.+ .++..+.++|+.|||.+..+. ..||||||.+. .+.||..|+.+|+|||+|+||.+|++.+..
T Consensus 12 ~~~~~~~i~~SG~~~-~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~ 89 (219)
T 3sqd_A 12 TPELTPFVLFTGFEP-VQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKF 89 (219)
T ss_dssp CGGGCCEEEECSCCH-HHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSC
T ss_pred CCCCCeEEEEeCCCh-HHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCC
Confidence 467999999999995 457899999999999999986 89999999876 567999999999999999999999999977
Q ss_pred CCC---CCCChhhhhhh------------hhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCC----------
Q psy2293 225 VNF---KADEPSFMNQY------------KLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEP---------- 279 (832)
Q Consensus 225 ~~~---~~~~~~~~~~~------------~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~---------- 279 (832)
+++ ...++++...| +.++|.|+.|++++-....++.+.++|+.+||++.......
T Consensus 90 l~e~~y~l~d~~~e~~~~~~l~~~l~ra~~~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~ 169 (219)
T 3sqd_A 90 IDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNS 169 (219)
T ss_dssp CCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCT
T ss_pred CChHhccCCCchhhhhcCCChHHHhhhhccccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhccc
Confidence 654 33444433222 46899999999998665668999999999999999443221
Q ss_pred --CceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcCcccccccccc
Q psy2293 280 --LTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLF 327 (832)
Q Consensus 280 --~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~ 327 (832)
....||..+.....+..+.+.|++|++.+||.+||-+. .+|-+.|.+
T Consensus 170 ~~~~~ivis~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q-~ld~~~~~~ 218 (219)
T 3sqd_A 170 SLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQ-TLDYESYKF 218 (219)
T ss_dssp TSCEEEEEECGGGGGGGHHHHHTTCCCEETHHHHHHHHHT-CCCTTTSBC
T ss_pred CCCCEEEEecccHHHHHHHHHHCCCcEEeHHHHHHHHHhe-eecchhccc
Confidence 12334444444455666667899999999999999984 557777765
No 31
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.83 E-value=1.3e-20 Score=197.59 Aligned_cols=180 Identities=17% Similarity=0.128 Sum_probs=137.3
Q ss_pred ccCCCceEEEEcCCCCh----------------------------HhHHHHHHHHHhcCCEEEeecCcc------eeEEE
Q psy2293 145 CHSMQNIVICITGFRNK----------------------------QETMKLIDITKHMGGKLRKEMNYQ------VTHLI 190 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~~----------------------------~~~~~l~~~v~~~GG~~~~~l~~~------~THLI 190 (832)
..+|.|+.+|+|+.... ..+.+|.++|+.+||.+..+++.. +||||
T Consensus 13 ~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LI 92 (259)
T 1kzy_C 13 KTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLI 92 (259)
T ss_dssp TTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEE
T ss_pred CcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEEE
Confidence 56899999999999642 145799999999999999999865 89999
Q ss_pred ecc-CCChhhHHHhhcCCCeeeHHHHHHHHHcCCcCCCCC---CC-hh-hhh-----hhhhcccccceEEecCCCh-hhH
Q psy2293 191 ANC-VSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFKA---DE-PS-FMN-----QYKLKLFQGAKVNFFGFSE-EDE 258 (832)
Q Consensus 191 a~~-~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~~~---~~-~~-~~~-----~~~~~~F~g~~i~~~g~~~-~e~ 258 (832)
|.. ..+.||..|...|+|||+++||.||++.+..+++.. .. .. ... ..+.++|+|+.|++++... ..+
T Consensus 93 a~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~~~~~~~~~~~~~~LF~G~~I~i~~~~~~~~~ 172 (259)
T 1kzy_C 93 ADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFL 172 (259)
T ss_dssp ESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCEEETTTTEEECCCCCCCTTTTCEEEEEESCTTTTH
T ss_pred cCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCCcccccchhhhccccCCCCCCeEEEEecCCCCCHH
Confidence 987 588999999999999999999999999987665431 00 00 000 1134689999999988753 456
Q ss_pred HHHHHHHHhCCCEeecCCC--------CCCceEEEEeC-C-CCcccccccCCCCeEeechhHHHhHhcCccccccc
Q psy2293 259 EQLQELLLSNGGKPSLSSD--------EPLTTHVVVDD-S-KVTCMPNVPCTSTYVVKARWFWMSIQNSECADESK 324 (832)
Q Consensus 259 ~~l~~li~~~GG~~~~~~~--------~~~~THlI~~~-~-~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~ 324 (832)
..+..+++.+||++..... ....+|+|+.+ . ...++..|.+++++||+.+||.+||..|..+++..
T Consensus 173 ~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~EWv~~sI~~~~ll~~~~ 248 (259)
T 1kzy_C 173 ELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQ 248 (259)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECHHHHHHHHHHTSCCCTTS
T ss_pred HHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecHHHHHHHHHhCCcCCCCc
Confidence 7788899999999773321 11345555543 2 22456677889999999999999999999998875
No 32
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.81 E-value=1.3e-19 Score=193.56 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=137.5
Q ss_pred CceeEEEeecc-cCcHHHHHHHhhCCCceEeecCCceEEecCCCCCcccccccccccchhhhCCCCCeEeCHHHHHHHHH
Q psy2293 49 MPCQICVCSNV-DQTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSEFTNNFLRFHKPPQSRILGPTALIEMSI 127 (832)
Q Consensus 49 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~~~~i~gp~~v~~~~~ 127 (832)
-.+.||+-|-. ....++.++++.+|+.+...=+ . .-+|+|+++..+++|..+.+. +++||.|+||.+|++
T Consensus 107 ~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t------~--~tTHLI~~~~~t~Ky~~A~~~-gi~IV~~~Wl~~c~~ 177 (298)
T 3olc_X 107 SDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLN------V--SVTHLIAGEVGSKKYLVAANL-KKPILLPSWIKTLWE 177 (298)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCC------T--TCCEEEESSSCSHHHHHHHHT-TCCEECHHHHHHHHH
T ss_pred CCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcC------C--CeeEEEEeCCCChHHHHHHHC-CCeEeeHHHHHHHHH
Confidence 34577876633 2677899999999998865311 1 235666666777789999999 999999999999999
Q ss_pred hccccccCCCC------CCCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecC-cceeEEEeccCCChhhH
Q psy2293 128 KVENLSIPLRT------RIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMN-YQVTHLIANCVSGEKYK 200 (832)
Q Consensus 128 ~~~~~~~~lp~------~~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~-~~~THLIa~~~~~~Ky~ 200 (832)
.++ .++. ...+....+|.|++||+||+.+ .+|..|..+|..+||.|+.+++ ++||||||....+.||.
T Consensus 178 ~~~----~~~~~~~~~~~~~~~~~~~f~g~~i~~tG~~~-~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~ 252 (298)
T 3olc_X 178 KSQ----EKKITRYTDINMEDFKCPIFLGCIICVTGLCG-LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYE 252 (298)
T ss_dssp HHH----TTCCSSGGGSCGGGGBCCTTTTCEEEECSCCH-HHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHH
T ss_pred cCC----cCCcccccccccccccccccCCeEEEEeCCCC-ccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHH
Confidence 998 3321 1124446789999999999985 5689999999999999999999 89999999999999999
Q ss_pred HHhhcCCCeeeHHHHHHHHHcCCcCCCC
Q psy2293 201 YAMGFRVPVLTKEFVLSAWEKRYDVNFK 228 (832)
Q Consensus 201 ~A~~~~i~IV~~~Wv~dc~~~~~~~~~~ 228 (832)
.|.+||||||+++||.||++++..+++.
T Consensus 253 ~A~~~gi~IV~~~Wl~dsi~~g~~lde~ 280 (298)
T 3olc_X 253 CAKRWNVHCVTTQWFFDSIEKGFCQDES 280 (298)
T ss_dssp HHHHTTCEEECHHHHHHHHHHTSCCCGG
T ss_pred HHHHCCCeEEeHHHHHHHHHCCCCCCch
Confidence 9999999999999999999999887765
No 33
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.77 E-value=2.3e-18 Score=177.57 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=140.6
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEe--ecCcceeEEEeccC-CChhhHHHhhcCCCeeeHHHHHHHHHcCC
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRK--EMNYQVTHLIANCV-SGEKYKYAMGFRVPVLTKEFVLSAWEKRY 223 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~--~l~~~~THLIa~~~-~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~ 223 (832)
..++.+|++||+. .+++..+.++|+.+||.+.. +++..|||||+... .+.||..|+..|++||+++||.+|.+.+.
T Consensus 6 ~~~~~~~~~Sg~~-~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~ 84 (235)
T 3al2_A 6 LKKQYIFQLSSLN-PQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGH 84 (235)
T ss_dssp --CCCEEEEESCC-HHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTS
T ss_pred CCCCEEEEEcCCC-HHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCC
Confidence 3478899999999 45678899999999999976 58899999999997 69999999999999999999999999997
Q ss_pred cCCCC---CCChhh--------------hh----------hhh-----hcccccceEEecCCChhhHHHHHHHHHhCCCE
Q psy2293 224 DVNFK---ADEPSF--------------MN----------QYK-----LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGK 271 (832)
Q Consensus 224 ~~~~~---~~~~~~--------------~~----------~~~-----~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~ 271 (832)
-+++. ..++.. .. ... .++|.|++|++++ +....+.+.++|+.+||+
T Consensus 85 ~l~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~-~~~~~~~l~~ii~agGg~ 163 (235)
T 3al2_A 85 FVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHV-DQSREAGFKRLLQSGGAK 163 (235)
T ss_dssp CCCSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEEC-CHHHHHHHHHHHHHTTCE
T ss_pred CCChhceeecCcchhccccCCChhhhHHHHHHHHHHHHHHhcccccccCCCCCCcEEEEec-CCCcHHHHHHHHHcCCcE
Confidence 66642 222211 00 011 4799999999997 345567899999999999
Q ss_pred eecCCCC----CCceEEEEeCCCC------cccccccCCCCeEeechhHHHhHhcCccccccccccCC
Q psy2293 272 PSLSSDE----PLTTHVVVDDSKV------TCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGK 329 (832)
Q Consensus 272 ~~~~~~~----~~~THlI~~~~~~------~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~~~~ 329 (832)
+. .... .+.||++++.... .++..+.+.+++||+++||.|+|-.+...+.+.|.+..
T Consensus 164 vl-~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 164 VL-PGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp EC-SSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSSCCCHHHHBCGG
T ss_pred Ee-cCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcCCCCChhheEccc
Confidence 98 3322 2468998864321 22333456789999999999999999999999998865
No 34
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.76 E-value=5e-18 Score=175.83 Aligned_cols=170 Identities=14% Similarity=0.220 Sum_probs=129.2
Q ss_pred CCCceEEEEcCC--CChHhHHHHHHHHHhcCCEEEee-----c--Cc-------------------ceeEEEeccC-CCh
Q psy2293 147 SMQNIVICITGF--RNKQETMKLIDITKHMGGKLRKE-----M--NY-------------------QVTHLIANCV-SGE 197 (832)
Q Consensus 147 ~~~g~~i~~tg~--~~~~~~~~l~~~v~~~GG~~~~~-----l--~~-------------------~~THLIa~~~-~~~ 197 (832)
+|+|+.||+|+. .+.+.+.+|.++|+.+||.+..+ + .. ..|||||... .+.
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~ 81 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKV 81 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCH
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcH
Confidence 799999999999 44456789999999999999887 2 11 3599999976 589
Q ss_pred hhHHHhhcCCCeeeHHHHHHHHHcCCcCCCCCC---------------------Chh--hhh--hhhhcccccceEEecC
Q psy2293 198 KYKYAMGFRVPVLTKEFVLSAWEKRYDVNFKAD---------------------EPS--FMN--QYKLKLFQGAKVNFFG 252 (832)
Q Consensus 198 Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~~~~---------------------~~~--~~~--~~~~~~F~g~~i~~~g 252 (832)
||..|..+|+|||+|+||.||++.+..+++... .+. +.. ..+..+|.|++|++++
T Consensus 82 K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Lf~g~~i~~~~ 161 (241)
T 2vxb_A 82 KYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKILFII 161 (241)
T ss_dssp HHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTTEEEECCCCCCCTTSCHHHHHHHCCCTTTTCEEEECC
T ss_pred HHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCCcchhccchhhccccCCChhhHHHHHHhhcCcCCCCcEEEEEe
Confidence 999999999999999999999998876554310 000 000 1224579999999864
Q ss_pred CCh-------------hhHHHHHHHHHhCCCEe--ecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcC
Q psy2293 253 FSE-------------EDEEQLQELLLSNGGKP--SLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 253 ~~~-------------~e~~~l~~li~~~GG~~--~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g 317 (832)
-.. +..+.+..++..+||++ . ...+...+|+|+.... ..+.+++++||+++||.+|+..|
T Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v-~~~~~~~~d~v~~~~~----~~~~~~~~~iV~~eWv~~~i~~g 236 (241)
T 2vxb_A 162 PEAKSWQKKIENTEQGQKALAHVYHALALGADVEIR-PNVAHLECDLILTMDG----NIVDETNCPVVDPEWIVECLISQ 236 (241)
T ss_dssp CC------------CHHHHHHHHHHHHHTTCEEECC-SCCSSCCCSEEECSSS----CCCSSCSSCEECHHHHHHHHHHT
T ss_pred CCCcccccccccccccchHHHHHHHHHHcCCceecc-cccccCCccEEEECCc----cccccCCCCEecHHHHHHHHHhc
Confidence 321 12478999999999999 4 2233346788886532 24778999999999999999999
Q ss_pred cccc
Q psy2293 318 ECAD 321 (832)
Q Consensus 318 ~~~~ 321 (832)
.++|
T Consensus 237 ~~l~ 240 (241)
T 2vxb_A 237 SDIS 240 (241)
T ss_dssp SCTT
T ss_pred eecC
Confidence 9886
No 35
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5e-20 Score=194.74 Aligned_cols=182 Identities=13% Similarity=0.146 Sum_probs=110.9
Q ss_pred cCCCceEEEE-cCCCC-----hHhHHHHHHHHHhcCCEEEeecCcc-----eeEEEeccCCChhhHHHhhcCCCeeeHHH
Q psy2293 146 HSMQNIVICI-TGFRN-----KQETMKLIDITKHMGGKLRKEMNYQ-----VTHLIANCVSGEKYKYAMGFRVPVLTKEF 214 (832)
Q Consensus 146 ~~~~g~~i~~-tg~~~-----~~~~~~l~~~v~~~GG~~~~~l~~~-----~THLIa~~~~~~Ky~~A~~~~i~IV~~~W 214 (832)
.+|+|++||+ +|..+ ...++.|..+|..+||++..+.... +||+|+.. .+.|+..+...|++||+|+|
T Consensus 4 ~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~-~t~k~~~~~~~~~~vV~p~W 82 (264)
T 1z56_C 4 NIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK-TTTECKALIDRGYDILHPNW 82 (264)
T ss_dssp CCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS-CCGGGGGGTTTTCCCBCSST
T ss_pred ccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC-CcHHHHHHHhCCCCEEechH
Confidence 4799999998 55421 1235688999999999887654432 47888865 57788888888899999999
Q ss_pred HHHHHHcCCcCCCCCC-----Chh----hh-----------------------------------------hhhhhcccc
Q psy2293 215 VLSAWEKRYDVNFKAD-----EPS----FM-----------------------------------------NQYKLKLFQ 244 (832)
Q Consensus 215 v~dc~~~~~~~~~~~~-----~~~----~~-----------------------------------------~~~~~~~F~ 244 (832)
|.||++.+..+++... .+. +. .......|.
T Consensus 83 v~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~lF~ 162 (264)
T 1z56_C 83 VLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFS 162 (264)
T ss_dssp THHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCCSCCCCCCC---
T ss_pred HHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhhhhhhcccccCchhhhC
Confidence 9999998876654321 110 00 001234799
Q ss_pred cceEEecCCC-hhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCC--c----ccccccC---------CCC-eEeec
Q psy2293 245 GAKVNFFGFS-EEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKV--T----CMPNVPC---------TST-YVVKA 307 (832)
Q Consensus 245 g~~i~~~g~~-~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~--~----k~~~a~~---------~~i-~iV~~ 307 (832)
||+||++|+. ...++.+..+|..+||+++ +.++..+||||+..... . ++..... .++ ++|++
T Consensus 163 g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~-~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~~ 241 (264)
T 1z56_C 163 NRIAYVPRRKISTEDDIIEMKIKLFGGKIT-DQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVAP 241 (264)
T ss_dssp -----------------CHHHHHHHTTSCC-CCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCEEECT
T ss_pred CeEEEEecCCCchhHHHHHHHHHHcCCEEe-cccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCCEEecH
Confidence 9999999975 4455667899999999999 45555555555543221 1 1221111 244 99999
Q ss_pred hhHHHhHhcCccccccccccCC
Q psy2293 308 RWFWMSIQNSECADESKYLFGK 329 (832)
Q Consensus 308 ~Wl~~si~~g~~~~E~~Y~~~~ 329 (832)
+||++|++.|.++||+.|.+.+
T Consensus 242 ~Wv~dci~~~~ll~e~~Y~~~~ 263 (264)
T 1z56_C 242 EWVDHSINENCQVPEEDFPVVN 263 (264)
T ss_dssp HHHHHHHTTSCCCSSCCC----
T ss_pred HHHHHHHHcCCcCCHHHcCCCC
Confidence 9999999999999999998754
No 36
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=165.81 Aligned_cols=166 Identities=12% Similarity=0.164 Sum_probs=122.8
Q ss_pred hCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCc----------cccCCCeEEeeeeEEEec
Q psy2293 567 NTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQ----------LINSHRSFVLKCDVIELS 636 (832)
Q Consensus 567 ~t~~~~~d~~~L~~A~~~i~~l~~~iNe~~~~~E~~~~l~~l~~~i~~~~~~----------L~~~~R~li~~g~l~~~~ 636 (832)
||+++|+|+..|++|++.++.++.+||+.++++|+.++|.+|+.+|++.+.. +--.+|+|+++|.+.+..
T Consensus 2 ~T~~~~~e~~~L~~Al~~ik~i~~~VNe~vre~E~~~rL~eiq~~l~~~~~~~~~~~~~f~~~dL~~R~Ll~eG~L~~k~ 81 (185)
T 2lg1_A 2 MTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDGSVFLKN 81 (185)
T ss_dssp CSSTTTSCCTTSCCSSSSSTTTSGGGGGGHHHHHHHHHHHHHHHSSCSSCCEECTTSCEECHHHHTTSCEEEEEEEEEEC
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccccccccccccccccCCCceeeeceEEEec
Confidence 7999999999999999999999999999999999999999999999974321 112469999999998654
Q ss_pred ccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCc
Q psy2293 637 NMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHD 716 (832)
Q Consensus 637 ~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~ 716 (832)
. .++.+++|+|||||+||+|+++... ..++++. . ....++|..+ .|.+..+
T Consensus 82 ~--~~~~~d~~~fLf~D~Ll~~~~~~~k-y~~~~~~-----------------~----~~pvi~L~~~-~vre~a~---- 132 (185)
T 2lg1_A 82 A--AGRLKEVQAVLLTDILVFLQEKDQK-YIFASLD-----------------Q----KSTVISLKKL-IVREVAH---- 132 (185)
T ss_dssp T--TCCEEEEEEEEESSEEECCEEETTE-EECCCCS-----------------S----SCSEEESSSC-EEECCSS----
T ss_pred c--CCCeeeEEEEeecCEEEEEEecCCE-EEEEccc-----------------C----CCCeEeecce-EEeccCC----
Confidence 2 2456899999999999999987433 1221110 0 1234667776 3444322
Q ss_pred ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 717 NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 717 ~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
..++|.+..... .....|.|.|.+ ..+|+.|++.|.+|+.++..+
T Consensus 133 -d~~~~fli~~~~--~g~~~yel~a~s-~~er~~W~~~I~~Ai~~~~~~ 177 (185)
T 2lg1_A 133 -EEKGLFLISMGM--TDPEMVEVHASS-KEERNSWIQIIQDTINTLNRD 177 (185)
T ss_dssp -CSSEEEEECCSS--SCCCCEEEECSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCeEEEEEecC--CCCeEEEEEcCC-HHHHHHHHHHHHHHHHhCChh
Confidence 235665554322 125789999865 559999999999999988644
No 37
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=149.88 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=77.4
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHcCCcCC
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVN 226 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~ 226 (832)
+|.|++||+|||+ .++|..|.++|+.+||.|+.+++.+|||||+.+..+.||..|.+|+|+||+++||.||++++..++
T Consensus 21 ~F~g~~Ic~sGf~-~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ld 99 (112)
T 3l46_A 21 PFQDCILSFLGFS-DEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDARAG 99 (112)
T ss_dssp TTTTCEECEESCC-HHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHTSCCC
T ss_pred ccCCeEEEEeCCC-HHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHcCCccC
Confidence 8999999999999 567999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CC
Q psy2293 227 FK 228 (832)
Q Consensus 227 ~~ 228 (832)
+.
T Consensus 100 E~ 101 (112)
T 3l46_A 100 ET 101 (112)
T ss_dssp GG
T ss_pred hh
Confidence 65
No 38
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=2.8e-17 Score=148.50 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=77.2
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHcCCcCC
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVN 226 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~ 226 (832)
+|.|++||++||++ .+|..|.++|..+||.|...++..|||||+....+.||+.|.+|+++||+++||.||++++..++
T Consensus 12 ~F~g~~i~~sg~~~-~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g~~ld 90 (109)
T 2cou_A 12 PFQDCILSFLGFSD-EEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDARAG 90 (109)
T ss_dssp TTTTCBEEEESSCH-HHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTSCCC
T ss_pred cCCCeEEEecCCCH-HHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcCCcCC
Confidence 89999999999994 66899999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q psy2293 227 FK 228 (832)
Q Consensus 227 ~~ 228 (832)
+.
T Consensus 91 E~ 92 (109)
T 2cou_A 91 ET 92 (109)
T ss_dssp GG
T ss_pred hh
Confidence 76
No 39
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.63 E-value=1.1e-15 Score=155.40 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=127.1
Q ss_pred CceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC-CChhhHHHhhcCCCeeeHHHHHHHHHcCCcCCC
Q psy2293 149 QNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV-SGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNF 227 (832)
Q Consensus 149 ~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~-~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~ 227 (832)
.++.|+|||+.+.+ +.+.|+.+||.+..+.+ .|||||+... .+.||..|+..|+|||+|+||.+|++.+..+++
T Consensus 7 ~~~~v~fSG~~~~~----~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e 81 (220)
T 3l41_A 7 KRVYITFTGYDKKP----SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDE 81 (220)
T ss_dssp CCEEEEECSCSSCC----CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCS
T ss_pred ceEEEEEeccCCCC----CcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhcccc
Confidence 67899999999643 27889999999999986 5999999987 799999999999999999999999999976655
Q ss_pred C---CCChhhhhh--------------hhhcccccceEEecCCC--hhhHHHHHHHHHhCCCEeecCC-CC--------C
Q psy2293 228 K---ADEPSFMNQ--------------YKLKLFQGAKVNFFGFS--EEDEEQLQELLLSNGGKPSLSS-DE--------P 279 (832)
Q Consensus 228 ~---~~~~~~~~~--------------~~~~~F~g~~i~~~g~~--~~e~~~l~~li~~~GG~~~~~~-~~--------~ 279 (832)
. ..+++.... .+.++|+|+.|++++.. ...++.|..+|+.+||++.... .. .
T Consensus 82 ~~y~l~d~~~e~~~~~~l~~~~~rar~~~~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~ 161 (220)
T 3l41_A 82 EPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLED 161 (220)
T ss_dssp GGGBCCCHHHHHHHTSCHHHHHHHHHHHCSCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHH
T ss_pred CccccCCcHHHhhccccHHHHHHHHHhcCchhhhheeEEEeccccCCCCCceEEEEEecCCcEechhhHHHHHHHHhccc
Confidence 3 233332111 23689999999999866 6678999999999999999300 10 1
Q ss_pred CceEEEEeCCCC---ccccc-c-cCCCCeEeechhHHHhHhcCccccccccc
Q psy2293 280 LTTHVVVDDSKV---TCMPN-V-PCTSTYVVKARWFWMSIQNSECADESKYL 326 (832)
Q Consensus 280 ~~THlI~~~~~~---~k~~~-a-~~~~i~iV~~~Wl~~si~~g~~~~E~~Y~ 326 (832)
...+||+.+..- .++.. + ...++.||+.+|+.++|-+...--++.|.
T Consensus 162 ~~~~vis~~~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~~~~~~~ 213 (220)
T 3l41_A 162 GNVVLITCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEIDVNDRIA 213 (220)
T ss_dssp CCEEEEECGGGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCCCTTCCBC
T ss_pred CCEEEEEeCCcchHHHHhhccccccceEEEechhHHHHHHHHHHcCcchHHH
Confidence 124666653221 11211 1 12455699999999999996554344433
No 40
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.1e-16 Score=144.85 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=84.4
Q ss_pred hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcCcc
Q psy2293 240 LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSEC 319 (832)
Q Consensus 240 ~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~ 319 (832)
.++|.|++|||+|+...+|..|.++|+.+||+|+ ...+.++||||+....+.|+..|.+|+++||+++||++|++.|.+
T Consensus 20 ~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~-~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~~ 98 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQNPFRSELRDKALELGAKYR-PDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRR 98 (129)
T ss_dssp TTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEE-SSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTTSC
T ss_pred cccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEe-CCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhCCc
Confidence 3479999999999998899999999999999999 677888999999999999999999999999999999999999999
Q ss_pred ccccccccCCC
Q psy2293 320 ADESKYLFGKN 330 (832)
Q Consensus 320 ~~E~~Y~~~~~ 330 (832)
++|..|.+...
T Consensus 99 l~e~~Y~l~~~ 109 (129)
T 2d8m_A 99 LPSQRYLMAGP 109 (129)
T ss_dssp CCGGGGBCSSS
T ss_pred CChHhcccCCC
Confidence 99999998663
No 41
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.1e-16 Score=143.17 Aligned_cols=92 Identities=24% Similarity=0.349 Sum_probs=82.8
Q ss_pred CCCCCCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHH
Q psy2293 136 LRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFV 215 (832)
Q Consensus 136 lp~~~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv 215 (832)
.|+...+.+..+|.|++||+||+.. .+|..|..+|..|||.|..+++..||||||....+.||..|..+|||||+++||
T Consensus 11 ~~~~~~~~~~~~f~g~~i~itG~~~-~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl 89 (129)
T 2d8m_A 11 RPRAGPEELGKILQGVVVVLSGFQN-PFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWV 89 (129)
T ss_dssp CSSCCHHHHTTTSTTEEEEEESCCT-THHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHH
T ss_pred CCcccCCCccccCCCeEEEEeCCCc-HHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHH
Confidence 3455556667789999999999994 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcCCCC
Q psy2293 216 LSAWEKRYDVNFK 228 (832)
Q Consensus 216 ~dc~~~~~~~~~~ 228 (832)
.+|++.+..+++.
T Consensus 90 ~d~~~~~~~l~e~ 102 (129)
T 2d8m_A 90 LDCHRMRRRLPSQ 102 (129)
T ss_dssp HHHHHTTSCCCGG
T ss_pred HHHHHhCCcCChH
Confidence 9999999877654
No 42
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.60 E-value=5.8e-16 Score=139.74 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=81.0
Q ss_pred hhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeC---CCCcccccccCCCCeEeechhHHHhHh
Q psy2293 239 KLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD---SKVTCMPNVPCTSTYVVKARWFWMSIQ 315 (832)
Q Consensus 239 ~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~---~~~~k~~~a~~~~i~iV~~~Wl~~si~ 315 (832)
..++|.||+||++|+....|..+.++|+.+||++. ...+.+|||||+.. ..+.|+..|.+++++||+++||++|++
T Consensus 12 ~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~-~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~ 90 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLSKKQSELNGIAASLGADYR-RSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQ 90 (107)
T ss_dssp --CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEE-SSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred ccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEe-ccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHH
Confidence 45689999999999998899999999999999999 77788999999943 456899999999999999999999999
Q ss_pred cCccccccccccCC
Q psy2293 316 NSECADESKYLFGK 329 (832)
Q Consensus 316 ~g~~~~E~~Y~~~~ 329 (832)
.|.++||++|.+..
T Consensus 91 ~~~~l~e~~Y~~~~ 104 (107)
T 3l3e_A 91 ECKHLPESLYPHTY 104 (107)
T ss_dssp HTSCCCGGGCCTTC
T ss_pred hCCCCchhhCCCCC
Confidence 99999999998754
No 43
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=7.8e-16 Score=135.01 Aligned_cols=85 Identities=20% Similarity=0.306 Sum_probs=75.2
Q ss_pred hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCC--CCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcC
Q psy2293 240 LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDE--PLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 240 ~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~--~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g 317 (832)
.++|+||+||++|+....+..+.++|+.+||++. ...+ .++||||+....+.|... ..+++||+++||+||++.|
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~-~~~~~~~~~THlI~~~~~~~K~~~--~~~~~iV~~~Wi~dci~~~ 81 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFL-HYLSSKKTVTHIVASNLPLKKRIE--FANYKVVSPDWIVDSVKEA 81 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEE-SSCCCTTTCCEEECSCCCHHHHHH--TTTSCEECTHHHHHHHHHT
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEE-EEecCCCceEEEEecCCCHHHHHH--cCCCCEEcccHHHHHHHcC
Confidence 4689999999999988889999999999999999 5555 789999999877766433 3789999999999999999
Q ss_pred cccccccccc
Q psy2293 318 ECADESKYLF 327 (832)
Q Consensus 318 ~~~~E~~Y~~ 327 (832)
.++||++|.+
T Consensus 82 ~~l~e~~Y~l 91 (92)
T 4id3_A 82 RLLPWQNYSL 91 (92)
T ss_dssp SCCCGGGGBC
T ss_pred CcCChhhccc
Confidence 9999999987
No 44
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=134.49 Aligned_cols=87 Identities=18% Similarity=0.378 Sum_probs=77.5
Q ss_pred hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcCcc
Q psy2293 240 LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSEC 319 (832)
Q Consensus 240 ~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~ 319 (832)
.++|+||+||++|+...++..|+++|..+||++........+||+|+....+.|+..+. +++||+++||+||++.|.+
T Consensus 10 ~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~--~~~iV~p~Wl~dci~~~~~ 87 (97)
T 2ebw_A 10 STIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK--GEKVIRPEWIVESIKAGRL 87 (97)
T ss_dssp CCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS--SSCCBCTHHHHHHHHHTSC
T ss_pred CCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc--CCCEeChHHHHHHHHcCCc
Confidence 46899999999999988999999999999999983344468999999998788877665 8999999999999999999
Q ss_pred ccccccccC
Q psy2293 320 ADESKYLFG 328 (832)
Q Consensus 320 ~~E~~Y~~~ 328 (832)
+||++|.+-
T Consensus 88 l~~~~Y~l~ 96 (97)
T 2ebw_A 88 LSYIPYQLY 96 (97)
T ss_dssp CCSGGGBSC
T ss_pred cCchHcEec
Confidence 999999863
No 45
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.56 E-value=5.7e-15 Score=133.22 Aligned_cols=81 Identities=17% Similarity=0.344 Sum_probs=74.7
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEec---cCCChhhHHHhhcCCCeeeHHHHHHHHHcCC
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIAN---CVSGEKYKYAMGFRVPVLTKEFVLSAWEKRY 223 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~---~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~ 223 (832)
+|.|++||+||+.+ ..|..|.++|..+||.+..+++.+||||||. ...+.||..|..+|++||+++||.+|++.+.
T Consensus 15 ~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~~~~ 93 (107)
T 3l3e_A 15 PLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQECK 93 (107)
T ss_dssp TTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHHhCC
Confidence 79999999999986 5689999999999999999999999999994 3467999999999999999999999999998
Q ss_pred cCCCC
Q psy2293 224 DVNFK 228 (832)
Q Consensus 224 ~~~~~ 228 (832)
.+++.
T Consensus 94 ~l~e~ 98 (107)
T 3l3e_A 94 HLPES 98 (107)
T ss_dssp CCCGG
T ss_pred CCchh
Confidence 87765
No 46
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=99.53 E-value=9.4e-14 Score=125.77 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=84.5
Q ss_pred ccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEee
Q psy2293 620 INSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLL 699 (832)
Q Consensus 620 ~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i 699 (832)
..|+|.||++|.++++........+.+|+|||||+||+|+++... ...|++...+
T Consensus 2 ~~pgR~lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~-------------------------~~~~~~~~~~ 56 (113)
T 1zc3_B 2 ETPGQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQR-------------------------RGMYRYNALY 56 (113)
T ss_dssp ---CCCEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCT-------------------------TSCEEEEEEE
T ss_pred CCCCeEEEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccC-------------------------cccEEEEEEE
Confidence 468999999999999874322224568999999999999987532 1127777889
Q ss_pred cccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 700 SMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 700 ~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
||.++ .|++++|+ +...|+|.|.... ..++++|.+ +.||.+||.+|++++.+..
T Consensus 57 ~L~~~-~v~d~~d~--~~~~n~f~i~~~~------~s~~~~aes-~~eK~~Wl~~~~~a~~~~~ 110 (113)
T 1zc3_B 57 PLDRL-AVVNVKDN--PPMKDMFKLLMFP------ESRIFQAEN-AKIKREWLEVLEETKRALS 110 (113)
T ss_dssp ETTTC-EEEEECCB--TTBSSEEEEEETT------EEEEEECSS-HHHHHHHHHHHHHHHHHHH
T ss_pred EcccC-EEEECCCC--cccceEEEEEeCC------ceEEEEcCC-HHHHHHHHHHHHHHHHHHh
Confidence 99998 88999988 6789999998643 368889864 5599999999999986643
No 47
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=3.7e-14 Score=124.24 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=71.0
Q ss_pred CccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecC--cceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHH
Q psy2293 142 PLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMN--YQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAW 219 (832)
Q Consensus 142 P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~--~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~ 219 (832)
|..+.+|+|++||++|+... .+..|.++|+.+||++..+++ ..||||||....+.|+..+ .+++||+|+||.||+
T Consensus 2 ~~~~~~f~g~~~~i~g~~~~-~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~--~~~~iV~~~Wi~dci 78 (92)
T 4id3_A 2 SQSSKIFKNCVIYINGYTKP-GRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF--ANYKVVSPDWIVDSV 78 (92)
T ss_dssp ----CTTTTCEEEECSCCSS-CHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT--TTSCEECTHHHHHHH
T ss_pred CccccccCCEEEEEeCCCCc-CHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc--CCCCEEcccHHHHHH
Confidence 44566899999999997643 478999999999999999999 8999999999888886554 789999999999999
Q ss_pred HcCCcCCCC
Q psy2293 220 EKRYDVNFK 228 (832)
Q Consensus 220 ~~~~~~~~~ 228 (832)
+++..+++.
T Consensus 79 ~~~~~l~e~ 87 (92)
T 4id3_A 79 KEARLLPWQ 87 (92)
T ss_dssp HHTSCCCGG
T ss_pred HcCCcCChh
Confidence 999877765
No 48
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.48 E-value=1.7e-14 Score=128.86 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=81.5
Q ss_pred hhcccccceEEecCCCh----hhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhH
Q psy2293 239 KLKLFQGAKVNFFGFSE----EDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSI 314 (832)
Q Consensus 239 ~~~~F~g~~i~~~g~~~----~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si 314 (832)
..|+|.||++||.++.. .....+.+++..+||++. +.++..+||||+.+..+.++..|++|+++||+++||.+|+
T Consensus 4 ~~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~-~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~ 82 (107)
T 3pa6_A 4 AAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVS-KTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCR 82 (107)
T ss_dssp CCCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEEC-SSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred cccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEe-cccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHH
Confidence 46899999999988752 235789999999999999 7778899999999988888999999999999999999999
Q ss_pred hcCccccccccccCCC
Q psy2293 315 QNSECADESKYLFGKN 330 (832)
Q Consensus 315 ~~g~~~~E~~Y~~~~~ 330 (832)
+.|.++||+.|.+...
T Consensus 83 ~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 83 TAGAHIDESLFPAANM 98 (107)
T ss_dssp HHTSCCCGGGSBCCCT
T ss_pred HhCccCChhcccCCCC
Confidence 9999999999998764
No 49
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.48 E-value=5.6e-14 Score=124.40 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=74.2
Q ss_pred CccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecC-cceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHH
Q psy2293 142 PLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMN-YQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWE 220 (832)
Q Consensus 142 P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~-~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~ 220 (832)
+....+|+|++||++|+...+ +..|..+|..+||.+..+++ ..+|||||.+..+.||+.|. +++||+|+||.||++
T Consensus 7 ~~~~~lF~g~~~~isg~~~~~-~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~--~~~iV~p~Wl~dci~ 83 (97)
T 2ebw_A 7 GTSSTIFSGVAIYVNGYTDPS-AEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK--GEKVIRPEWIVESIK 83 (97)
T ss_dssp SCCCCTTTTCEEEECSSCSSC-HHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS--SSCCBCTHHHHHHHH
T ss_pred CCCCCCCCCeEEEEeCCCccc-HHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc--CCCEeChHHHHHHHH
Confidence 344568999999999997544 78999999999999999887 69999999999899998876 899999999999999
Q ss_pred cCCcCCCC
Q psy2293 221 KRYDVNFK 228 (832)
Q Consensus 221 ~~~~~~~~ 228 (832)
.+..+++.
T Consensus 84 ~~~~l~~~ 91 (97)
T 2ebw_A 84 AGRLLSYI 91 (97)
T ss_dssp HTSCCCSG
T ss_pred cCCccCch
Confidence 99877765
No 50
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.1e-14 Score=153.60 Aligned_cols=159 Identities=10% Similarity=0.052 Sum_probs=99.9
Q ss_pred CcHHHHHHHhhCCCceEeecCCceEEecCCCCCcccccccccccchhhhCCCCCeEeCHHHHHHHHHhccccccCCCCCC
Q psy2293 61 QTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSEFTNNFLRFHKPPQSRILGPTALIEMSIKVENLSIPLRTRI 140 (832)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~~~~i~gp~~v~~~~~~~~~~~~~lp~~~ 140 (832)
..++|..++.++|+.++.......+-.. +++|+.+..+.+|..+.+. +++||.|+||.+|++.++ .+|...
T Consensus 27 ~~~~L~~li~~~GG~~~~~~~~~t~~~~----~~~iI~~~~t~k~~~~~~~-~~~vV~p~Wv~dci~~~~----llp~~~ 97 (264)
T 1z56_C 27 TRAELEKTIVEHGGKLIYNVILKRHSIG----DVRLISCKTTTECKALIDR-GYDILHPNWVLDCIAYKR----LILIEP 97 (264)
T ss_dssp SCCCTHHHHHHHHTTSCCCSSCCCCCSS----CCEEEECSCCGGGGGGTTT-TCCCBCSSTTHHHHSSCS----CCCCCS
T ss_pred CHHHHHHHHHHcCCEEeecCCCCccCcc----ceEEEecCCcHHHHHHHhC-CCCEEechHHHHHhhcCC----CCCCCh
Confidence 5678999999999988763333232111 2334444555668888888 799999999999999999 666543
Q ss_pred CC--------------------------------------------------------ccccCCCceEEEEcCCCChHhH
Q psy2293 141 RP--------------------------------------------------------LFCHSMQNIVICITGFRNKQET 164 (832)
Q Consensus 141 ~P--------------------------------------------------------~~~~~~~g~~i~~tg~~~~~~~ 164 (832)
+. ....+|+|++||++|+.+...+
T Consensus 98 y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~lF~g~~~yl~~~~~~~~~ 177 (264)
T 1z56_C 98 NYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFSNRIAYVPRRKISTED 177 (264)
T ss_dssp CBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCCSCCCCCCC------------------
T ss_pred HHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhhhhhhcccccCchhhhCCeEEEEecCCCchhH
Confidence 21 2345899999999997533334
Q ss_pred HHHHHHHHhcCCEEEeecCcceeEEEeccCCC--hh----hHHHhh---------cCC-CeeeHHHHHHHHHcCCcCCCC
Q psy2293 165 MKLIDITKHMGGKLRKEMNYQVTHLIANCVSG--EK----YKYAMG---------FRV-PVLTKEFVLSAWEKRYDVNFK 228 (832)
Q Consensus 165 ~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~--~K----y~~A~~---------~~i-~IV~~~Wv~dc~~~~~~~~~~ 228 (832)
+.+..+|.++||++..+++..|||+|+..... .. .+.... .++ +||+|+||.+||+.+..+++.
T Consensus 178 ~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~ll~e~ 257 (264)
T 1z56_C 178 DIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVAPEWVDHSINENCQVPEE 257 (264)
T ss_dssp --CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCEEECTHHHHHHHTTSCCCSSC
T ss_pred HHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCCEEecHHHHHHHHHcCCcCCHH
Confidence 56788899999999999998888888854221 22 222221 134 899999999999999988776
No 51
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.45 E-value=1.2e-13 Score=129.22 Aligned_cols=88 Identities=24% Similarity=0.383 Sum_probs=75.5
Q ss_pred hcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccc---cCCCCeEeechhHHHhHhc
Q psy2293 240 LKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNV---PCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 240 ~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a---~~~~i~iV~~~Wl~~si~~ 316 (832)
..+|.||+||++|+...++..|.+++..+||++. ...+..+||||+..... +++.+ ...+++||+++||++|++.
T Consensus 38 ~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~-~~l~~~vTHvI~~~~~~-~~~~~~~~~~~~~~iV~~~Wv~dsi~~ 115 (132)
T 1wf6_A 38 EDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRF-NQLNEDVTHVIVGDYDD-ELKQFWNKSAHRPHVVGAKWLLECFSK 115 (132)
T ss_dssp TTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEE-SSCCSSCCEEEESSCCS-HHHHHHHHSCCCCCEEEHHHHHHHHHH
T ss_pred ccccCCEEEEEECCChHHHHHHHHHHHHCCCEEe-CcCCCCCeEEEECCchH-HHHHHHHhhCCCCeEechHHHHHHHHc
Confidence 4589999999999999999999999999999999 66678999999987433 22222 2368999999999999999
Q ss_pred CccccccccccCC
Q psy2293 317 SECADESKYLFGK 329 (832)
Q Consensus 317 g~~~~E~~Y~~~~ 329 (832)
|.++||..|.+..
T Consensus 116 ~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 116 GYMLSEEPYIHSG 128 (132)
T ss_dssp SSCCCSGGGBCCC
T ss_pred CCcCCHhhccCCC
Confidence 9999999998754
No 52
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.43 E-value=1.4e-13 Score=122.88 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCC-h--HhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHcCC
Q psy2293 147 SMQNIVICITGFRN-K--QETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRY 223 (832)
Q Consensus 147 ~~~g~~i~~tg~~~-~--~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~ 223 (832)
+|+|++|++.+... . +..+.+.+++..|||++.++++..|||||+.+..+.+|+.|.+++||||+++||.+|++.+.
T Consensus 7 ~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~~~~ 86 (107)
T 3pa6_A 7 ILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRTAGA 86 (107)
T ss_dssp TTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHHHTS
T ss_pred ccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHHhCc
Confidence 79999999966541 1 12368999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy2293 224 DVNFK 228 (832)
Q Consensus 224 ~~~~~ 228 (832)
.+++.
T Consensus 87 ~vdE~ 91 (107)
T 3pa6_A 87 HIDES 91 (107)
T ss_dssp CCCGG
T ss_pred cCChh
Confidence 88775
No 53
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.42 E-value=2.5e-13 Score=120.05 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=80.0
Q ss_pred cccccceEEecCCC-hhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccC--CCCeEeechhHHHhHhcC
Q psy2293 241 KLFQGAKVNFFGFS-EEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPC--TSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 241 ~~F~g~~i~~~g~~-~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~--~~i~iV~~~Wl~~si~~g 317 (832)
..|.|++|+++|.. ..++..+.++|.++||.+. +..+.++||+|++...+.+++.|++ .++.+|+++|||+|++++
T Consensus 6 d~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~-~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~ 84 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELE-DYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQ 84 (104)
T ss_dssp CTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEEC-SSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHT
T ss_pred hhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEE-cccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcC
Confidence 47999999999988 6899999999999999988 7778899999999988888877764 479999999999999999
Q ss_pred ccccccccccCC
Q psy2293 318 ECADESKYLFGK 329 (832)
Q Consensus 318 ~~~~E~~Y~~~~ 329 (832)
+++++++|.+.+
T Consensus 85 klvp~~~y~~~~ 96 (104)
T 3pc6_A 85 KLLPHQLYGVVP 96 (104)
T ss_dssp SCCCGGGGBCCC
T ss_pred ccCCcccceecc
Confidence 999999999865
No 54
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=99.40 E-value=3.7e-12 Score=117.33 Aligned_cols=118 Identities=23% Similarity=0.265 Sum_probs=85.3
Q ss_pred ccccCCCeEEeeeeEEEecc--cccCC-ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcce
Q psy2293 618 QLINSHRSFVLKCDVIELSN--MLSHR-GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYK 694 (832)
Q Consensus 618 ~L~~~~R~li~~g~l~~~~~--~~~~k-~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk 694 (832)
.|..|+|+||+.+.+..+.+ .++++ .++|++|||||+||+||+..+... ...|.
T Consensus 5 ~L~~phRrlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~-----------------------~~~Y~ 61 (140)
T 3qwm_A 5 VLSLPHRRLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKN-----------------------SVTYS 61 (140)
T ss_dssp -----CCCEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---C-----------------------CCCCC
T ss_pred eeccCCceEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCC-----------------------CCceE
Confidence 36789999999999998864 22333 489999999999999985443210 22488
Q ss_pred eEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 695 HIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 695 ~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
++..+||..+ .|...++ +...+.|.|....++...+..++|.|+ ++.||.+|+++|..+|++..
T Consensus 62 vr~~~~L~gm-~V~~~e~---e~~p~~~~l~s~~~G~~~k~~i~~~A~-s~~ER~rwi~dL~esI~e~~ 125 (140)
T 3qwm_A 62 FRQSFSLYGM-QVLLFEN---QYYPNGIRLTSSVPGADIKVLINFNAP-NPQDRKKFTDDLRESIAEVQ 125 (140)
T ss_dssp CEEEECCTTE-EEEEECC---SSCTTEEEEEECCTTSCCEEEEEEECS-SHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeecce-EEEcccC---CCCceEEEEEecCCCCcceEEEEEECC-CHHHHHHHHHHHHHHHHHHH
Confidence 8899999999 5555544 357788888876543345678999985 46699999999999998775
No 55
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.32 E-value=6.3e-13 Score=146.72 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=85.2
Q ss_pred hhhhhhhhcccccceEEecCCChh----hHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCC-CCeEeec
Q psy2293 233 SFMNQYKLKLFQGAKVNFFGFSEE----DEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCT-STYVVKA 307 (832)
Q Consensus 233 ~~~~~~~~~~F~g~~i~~~g~~~~----e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~-~i~iV~~ 307 (832)
......+.++|.||+|||+|+.+. ++..+.++++.+||+|+ ...+.++||||+....+.|+..|.++ +++||++
T Consensus 343 ~il~~~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~-~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~ 421 (442)
T 3ef1_A 343 LIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVV-LDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKL 421 (442)
T ss_dssp HHHHHHHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEEC-SSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEH
T ss_pred HHHHHHhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEe-CCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeH
Confidence 445567788999999999998643 57899999999999999 77889999999999999999999998 5999999
Q ss_pred hhHHHhHhcCcccccccccc
Q psy2293 308 RWFWMSIQNSECADESKYLF 327 (832)
Q Consensus 308 ~Wl~~si~~g~~~~E~~Y~~ 327 (832)
+||++|++.|.++||..|++
T Consensus 422 ~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 422 NWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHHHHHHTSCCCGGGTBC
T ss_pred HHHHHHHHcCCcCChhcccc
Confidence 99999999999999999986
No 56
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.30 E-value=1.3e-12 Score=142.83 Aligned_cols=95 Identities=19% Similarity=0.252 Sum_probs=85.2
Q ss_pred hhhhhhhhhcccccceEEecCCCh----hhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCC-CCeEee
Q psy2293 232 PSFMNQYKLKLFQGAKVNFFGFSE----EDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCT-STYVVK 306 (832)
Q Consensus 232 ~~~~~~~~~~~F~g~~i~~~g~~~----~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~-~i~iV~ 306 (832)
.......+.++|.||+|||+|+.+ .++..+.++++.+||+++ ...+.++||||+....+.|+..|.++ +++||+
T Consensus 272 ~~ii~~lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~-~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~ 350 (372)
T 3ef0_A 272 GLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVV-LDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVK 350 (372)
T ss_dssp HHHHHHHHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEE-SSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEE
T ss_pred HHHHHHHHhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEe-CcCCCCceEEEEcCCCchHHHHHHhcCCCEEEc
Confidence 344556778899999999999863 356899999999999999 77788999999999999999999998 899999
Q ss_pred chhHHHhHhcCcccccccccc
Q psy2293 307 ARWFWMSIQNSECADESKYLF 327 (832)
Q Consensus 307 ~~Wl~~si~~g~~~~E~~Y~~ 327 (832)
++||++|++.+.++||+.|.+
T Consensus 351 ~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 351 LNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHHHHHHHTTSCCCGGGGBC
T ss_pred HHHHHHHHHhCCcCChhhcee
Confidence 999999999999999999986
No 57
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.30 E-value=2.3e-11 Score=127.62 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=113.7
Q ss_pred eeEEEeec--ccCcHHHHHHHhhCCCceEeecCCceEEecCCCCCcccccccccccchhhhCCCCCeEeCHHHHHHHHHh
Q psy2293 51 CQICVCSN--VDQTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSEFTNNFLRFHKPPQSRILGPTALIEMSIK 128 (832)
Q Consensus 51 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~~~~i~gp~~v~~~~~~ 128 (832)
+.||+... ....++|.+.+.++|+.++...++. +++|+.+.-+.++..+.+.++++||.|+||.+|+++
T Consensus 14 ~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~---------t~~iIa~~~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 14 VEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD---------TYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp CEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTT---------EEEEECSSCCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCC---------EEEEEeCCCCHHHHHHHhcCCCCEeehHHHHHHHhc
Confidence 45666532 2367899999999999998643322 222222222345888887724999999999999999
Q ss_pred ccccccCCCCCCC-----------------------------------------------C------------------c
Q psy2293 129 VENLSIPLRTRIR-----------------------------------------------P------------------L 143 (832)
Q Consensus 129 ~~~~~~~lp~~~~-----------------------------------------------P------------------~ 143 (832)
++ .||..++ | .
T Consensus 85 ~~----llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (263)
T 3ii6_X 85 KS----FVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCS 160 (263)
T ss_dssp TS----CCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTC
T ss_pred CC----cCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCC
Confidence 98 5553311 0 1
Q ss_pred cccCCCceEEEEcCCCC---------hHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCCh-hhHHHh----hcCCCe
Q psy2293 144 FCHSMQNIVICITGFRN---------KQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGE-KYKYAM----GFRVPV 209 (832)
Q Consensus 144 ~~~~~~g~~i~~tg~~~---------~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~-Ky~~A~----~~~i~I 209 (832)
+...|+|++|++-+... ....+.+..++..+||++..+++..|||+|+.+.... ....+. ..+++|
T Consensus 161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~i 240 (263)
T 3ii6_X 161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKI 240 (263)
T ss_dssp GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEE
T ss_pred cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCEE
Confidence 23378999999965420 1123455788999999999999999999999874331 222222 236899
Q ss_pred eeHHHHHHHHHcCCcCCCC
Q psy2293 210 LTKEFVLSAWEKRYDVNFK 228 (832)
Q Consensus 210 V~~~Wv~dc~~~~~~~~~~ 228 (832)
|+|+||.+||+.+..+++.
T Consensus 241 V~~~Wv~dci~~~~~l~E~ 259 (263)
T 3ii6_X 241 LKESWVTDSIDKCELQEEN 259 (263)
T ss_dssp EETHHHHHHHHTTSCCCGG
T ss_pred eChHHHHHHHHcCCcCCHh
Confidence 9999999999999887665
No 58
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.29 E-value=2.3e-12 Score=142.21 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=75.1
Q ss_pred CCCceEEEEcCCCChH---hHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhc-CCCeeeHHHHHHHHHcC
Q psy2293 147 SMQNIVICITGFRNKQ---ETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGF-RVPVLTKEFVLSAWEKR 222 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~---~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~-~i~IV~~~Wv~dc~~~~ 222 (832)
+|.|++|||||+.+.. ++..+..+|..|||.+..+++..||||||....|.||+.|.++ ||+||+++||.+|+..+
T Consensus 352 ~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~~~ 431 (442)
T 3ef1_A 352 VLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQW 431 (442)
T ss_dssp TSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHHHHT
T ss_pred ccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHHHcC
Confidence 7899999999987443 3578999999999999999999999999999999999999999 59999999999999999
Q ss_pred CcCCCC
Q psy2293 223 YDVNFK 228 (832)
Q Consensus 223 ~~~~~~ 228 (832)
..+++.
T Consensus 432 krldE~ 437 (442)
T 3ef1_A 432 KRLPES 437 (442)
T ss_dssp SCCCGG
T ss_pred CcCChh
Confidence 887765
No 59
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.29 E-value=9.6e-12 Score=126.77 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=110.9
Q ss_pred CcHHHHHHHhhCCCceEeecCCceEEecCCCCCccccccc------ccccchhhhCCCCCeEeCHHHHHHHHHhcccccc
Q psy2293 61 QTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSE------FTNNFLRFHKPPQSRILGPTALIEMSIKVENLSI 134 (832)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~~------~~~~f~~~~~~~~~~i~gp~~v~~~~~~~~~~~~ 134 (832)
..+.+.++++.+|+.+...-+. .-+|+|+.+. .+.+|..+... +++||.|.||.+|++.++
T Consensus 16 ~~~~l~~~~~~~G~~~~~~~~~--------~~THli~~~~~~~~~~rt~k~~~a~~~-g~~IV~~~Wl~~~~~~~~---- 82 (214)
T 1t15_A 16 EFMLVYKFARKHHITLTNLITE--------ETTHVVMKTDAEFVCERTLKYFLGIAG-GKWVVSYFWVTQSIKERK---- 82 (214)
T ss_dssp HHHHHHHHHHHHTCEECSSCCT--------TCCEEEECBCTTSEECCBHHHHHHHHT-TCEEEETHHHHHHHHTTS----
T ss_pred HHHHHHHHHHHhCCEEeCccCC--------CCcEEEEeCCcccchhhhHHHHHHHhc-CCEEeCHHHHHHHHHCCC----
Confidence 4566888889999866542111 1255555553 36778888888 999999999999999998
Q ss_pred CCCCCCCCc--------------------cccCCCceEEEEcC-CCChHhHHHHHHHHHhcCCEEEeecCcc-----eeE
Q psy2293 135 PLRTRIRPL--------------------FCHSMQNIVICITG-FRNKQETMKLIDITKHMGGKLRKEMNYQ-----VTH 188 (832)
Q Consensus 135 ~lp~~~~P~--------------------~~~~~~g~~i~~tg-~~~~~~~~~l~~~v~~~GG~~~~~l~~~-----~TH 188 (832)
.+|...+.+ ...+|.|+.||++| +.. ..+..|..+|+.+||++..++... +++
T Consensus 83 ~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~~lF~g~~~~~~~~~~~-~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ 161 (214)
T 1t15_A 83 MLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTN-MPTDQLEWMVQLCGASVVKELSSFTLGTGVHP 161 (214)
T ss_dssp CCCGGGGBCCEETTTBTTCCHHHHHHTCTTSCTTTTCEEEECSCCSS-SCHHHHHHHHHHTTCEECCSGGGCCCSTTCCE
T ss_pred cCChHHeEeeccccccccccchhhHhhcCCCcccCCCEEEEEecCCC-CCHHHHHHHHHHCCCEEecCccccccCCCCcc
Confidence 665443211 23589999999976 543 346789999999999999988752 234
Q ss_pred EEeccCC----ChhhH-HHhhcCCCeeeHHHHHHHHHcCCcCCCC
Q psy2293 189 LIANCVS----GEKYK-YAMGFRVPVLTKEFVLSAWEKRYDVNFK 228 (832)
Q Consensus 189 LIa~~~~----~~Ky~-~A~~~~i~IV~~~Wv~dc~~~~~~~~~~ 228 (832)
+|+...+ ..++. .|...+++||+++||.||+.++...++.
T Consensus 162 ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~ 206 (214)
T 1t15_A 162 IVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELD 206 (214)
T ss_dssp EEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSG
T ss_pred EEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCc
Confidence 5444321 22443 4668899999999999999998866654
No 60
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.29 E-value=9e-12 Score=128.44 Aligned_cols=171 Identities=11% Similarity=0.075 Sum_probs=110.1
Q ss_pred eEEEeecc-cCcHHHHHHHhhCCCceEeecCCceEEecCCCCCcccccc------cccccchhhhCCCCCeEeCHHHHHH
Q psy2293 52 QICVCSNV-DQTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTS------EFTNNFLRFHKPPQSRILGPTALIE 124 (832)
Q Consensus 52 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~------~~~~~f~~~~~~~~~~i~gp~~v~~ 124 (832)
.||+-|-. .+...+.++++.+|+.+...-+. .-+|+|+.+ .-+.+|..+... +++||.|.||.+
T Consensus 9 ~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~--------~~THlI~~~~~~~~~~rt~K~~~a~~~-g~~IV~~~Wl~~ 79 (229)
T 1l0b_A 9 SMVVSGLTPKEVMIVQKFAEKYRLALTDVITE--------ETTHVIIKTDAEFVCERTLKYFLGIAG-GKWIVSYSWVIK 79 (229)
T ss_dssp EEEEESCCHHHHHHHHHHHHHTTCEECSSCCS--------SCCEEEECBCTTSEECCCHHHHHHHHT-TCEEEETHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCC--------CCCEEEEcCCccccccccHHHHHHHHC-CCcEecHHHHHH
Confidence 45554422 24556888889999876542111 124555554 357779999888 999999999999
Q ss_pred HHHhccccccCCCCCCCCcc-------------------ccCCCceEEEEcC-CCChHhHHHHHHHHHhcCCEEEeecCc
Q psy2293 125 MSIKVENLSIPLRTRIRPLF-------------------CHSMQNIVICITG-FRNKQETMKLIDITKHMGGKLRKEMNY 184 (832)
Q Consensus 125 ~~~~~~~~~~~lp~~~~P~~-------------------~~~~~g~~i~~tg-~~~~~~~~~l~~~v~~~GG~~~~~l~~ 184 (832)
|++.++ .+|...+-+. ..+|.|+.||++| +.. ..++.|..+|+.+||++...+..
T Consensus 80 ~~~~~~----~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~lF~g~~~~~~~~~~~-~~~~~l~~li~~~GG~v~~~~~~ 154 (229)
T 1l0b_A 80 SIQERK----LLSVHEFEVKGDVVTGSNHQGPRRSRESQEKLFEGLQIYCCEPFTN-MPKDELERMLQLCGASVVKELPL 154 (229)
T ss_dssp HHTTTS----CCCSGGGBCCEETTTCSSSCHHHHHHHHC--CCTTCEEEECSCCSS-SCHHHHHHHHHHTTCEEECSSSC
T ss_pred HHHCCC----cCChHHeEeccccccccccccchhhhhhhhhhhcCceEEEEecCCC-CCHHHHHHHHHHCCCEEeCCccc
Confidence 999999 6665433111 2589999999976 543 34679999999999999999875
Q ss_pred c-----eeEEEeccC----CChhhHHH-hhcCCCeeeHHHHHHHHHcCCcCCCCCCChhhhhhhhhcccc
Q psy2293 185 Q-----VTHLIANCV----SGEKYKYA-MGFRVPVLTKEFVLSAWEKRYDVNFKADEPSFMNQYKLKLFQ 244 (832)
Q Consensus 185 ~-----~THLIa~~~----~~~Ky~~A-~~~~i~IV~~~Wv~dc~~~~~~~~~~~~~~~~~~~~~~~~F~ 244 (832)
. ++|+|+-.. ...+|+.+ ...+++||+++||.||+..+...++. +|.++.+.
T Consensus 155 ~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~--------~Y~l~~~~ 216 (229)
T 1l0b_A 155 LTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLD--------AYLVQNIT 216 (229)
T ss_dssp GGGCCSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCGG--------GGBCC---
T ss_pred ccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCCcc--------ceEccccc
Confidence 3 577554332 34566543 46899999999999999988765544 66655443
No 61
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.28 E-value=3.9e-12 Score=138.98 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=76.0
Q ss_pred ccCCCceEEEEcCCCCh---HhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhc-CCCeeeHHHHHHHHH
Q psy2293 145 CHSMQNIVICITGFRNK---QETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGF-RVPVLTKEFVLSAWE 220 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~~---~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~-~i~IV~~~Wv~dc~~ 220 (832)
..+|.|++|||||+.+. .++..+..++..|||.+..+++..||||||....+.||+.|.++ ||+||+|+||.+|++
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~ 359 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLS 359 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHH
Confidence 35899999999999743 23578999999999999999999999999999999999999999 799999999999999
Q ss_pred cCCcCCCC
Q psy2293 221 KRYDVNFK 228 (832)
Q Consensus 221 ~~~~~~~~ 228 (832)
.+..+++.
T Consensus 360 ~~~~vdE~ 367 (372)
T 3ef0_A 360 QWKRLPES 367 (372)
T ss_dssp TTSCCCGG
T ss_pred hCCcCChh
Confidence 99877765
No 62
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.25 E-value=1.8e-11 Score=126.53 Aligned_cols=168 Identities=10% Similarity=0.083 Sum_probs=117.7
Q ss_pred ceeEEEeec--c--cCcHHHHHHHhhCCCceEeecCCceEEec------------------CCCCCcccccccc-cccch
Q psy2293 50 PCQICVCSN--V--DQTETFKKALASFNVPVVLVEDPDYFVHA------------------KFDGPIIIVTSEF-TNNFL 106 (832)
Q Consensus 50 ~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------------~f~g~~i~~~~~~-~~~f~ 106 (832)
.+.|||.+. . ...+++.++++++|+.++...-.++|-.. +..-.++|++... +.+|.
T Consensus 5 g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~K~~ 84 (241)
T 2vxb_A 5 DCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKVKYL 84 (241)
T ss_dssp TEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCHHHH
T ss_pred CcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcHHHH
Confidence 467888876 2 36788999999999988763111122111 1111556666554 67799
Q ss_pred hhhCCCCCeEeCHHHHHHHHHhccccccCCCCCCCCc------------------c-------------ccCCCceEEEE
Q psy2293 107 RFHKPPQSRILGPTALIEMSIKVENLSIPLRTRIRPL------------------F-------------CHSMQNIVICI 155 (832)
Q Consensus 107 ~~~~~~~~~i~gp~~v~~~~~~~~~~~~~lp~~~~P~------------------~-------------~~~~~g~~i~~ 155 (832)
.+... ++|||.|+||.+|+++++ .+|...+.+ | ...|.|.+|+|
T Consensus 85 ~ala~-gipiV~~~Wi~dc~~~~~----~~~~~~ylL~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Lf~g~~i~~ 159 (241)
T 2vxb_A 85 EALAF-NIPCVHPQFIKQCLKMNR----VVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKILF 159 (241)
T ss_dssp HHHHH-TCCEECTHHHHHHHHHTS----CCCSGGGBBEEEEETTTTEEEECCCCCCCTTSCHHHHHHHCCCTTTTCEEEE
T ss_pred HHHHc-CCCEecHHHHHHHHHcCC----cCChhhccCCCCcchhccchhhccccCCChhhHHHHHHhhcCcCCCCcEEEE
Confidence 98888 999999999999999999 565443211 1 24699999988
Q ss_pred cCC-CC-----------hHhHHHHHHHHHhcCCEE--EeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHc
Q psy2293 156 TGF-RN-----------KQETMKLIDITKHMGGKL--RKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 156 tg~-~~-----------~~~~~~l~~~v~~~GG~~--~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~ 221 (832)
+.- .. .+.++.+..++.++||.+ ..+++...+|+|..... ..|..+++|||+++||.+||..
T Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~----~~~~~~~~~iV~~eWv~~~i~~ 235 (241)
T 2vxb_A 160 IIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDG----NIVDETNCPVVDPEWIVECLIS 235 (241)
T ss_dssp CCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSS----CCCSSCSSCEECHHHHHHHHHH
T ss_pred EeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCc----cccccCCCCEecHHHHHHHHHh
Confidence 542 21 123478899999999999 44444456777775432 2377899999999999999998
Q ss_pred CCcCC
Q psy2293 222 RYDVN 226 (832)
Q Consensus 222 ~~~~~ 226 (832)
+..++
T Consensus 236 g~~l~ 240 (241)
T 2vxb_A 236 QSDIS 240 (241)
T ss_dssp TSCTT
T ss_pred ceecC
Confidence 87665
No 63
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.25 E-value=5.9e-12 Score=128.25 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=82.2
Q ss_pred hhhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCC-CCcccccccCCCCeEeechhHHHhHhc
Q psy2293 238 YKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDS-KVTCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 238 ~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~-~~~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
.++.|..|++|+||||...++..+.++|+.+||.++.+ ..+|||||+... ++.|+..|..+|++||+++||.+|++.
T Consensus 9 ~~~~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~--~~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~ 86 (219)
T 3sqd_A 9 MKLTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAES--AQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRC 86 (219)
T ss_dssp CCCCGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSS--GGGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHH
T ss_pred cccCCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCC--CCCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHc
Confidence 46778999999999999999999999999999999933 388999999875 456999999999999999999999999
Q ss_pred CccccccccccCC
Q psy2293 317 SECADESKYLFGK 329 (832)
Q Consensus 317 g~~~~E~~Y~~~~ 329 (832)
|.++||++|.+..
T Consensus 87 ~~~l~e~~y~l~d 99 (219)
T 3sqd_A 87 QKFIDEQNYILRD 99 (219)
T ss_dssp TSCCCSGGGBCCC
T ss_pred CCCCChHhccCCC
Confidence 9999999999966
No 64
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.24 E-value=2.2e-11 Score=107.64 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=75.0
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhh--cCCCeeeHHHHHHHHHcCC
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMG--FRVPVLTKEFVLSAWEKRY 223 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~--~~i~IV~~~Wv~dc~~~~~ 223 (832)
.+|.|++++++|..+..+++.|..+|.++||.+...++.+|||+|+....+.+++.|.+ -++++|+|+||.+|.+++.
T Consensus 6 d~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~k 85 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQK 85 (104)
T ss_dssp CTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHTS
T ss_pred hhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcCc
Confidence 38999999999988556789999999999999999999999999999999999998883 3699999999999999998
Q ss_pred cCCCC
Q psy2293 224 DVNFK 228 (832)
Q Consensus 224 ~~~~~ 228 (832)
.+...
T Consensus 86 lvp~~ 90 (104)
T 3pc6_A 86 LLPHQ 90 (104)
T ss_dssp CCCGG
T ss_pred cCCcc
Confidence 77654
No 65
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.23 E-value=1.6e-11 Score=123.35 Aligned_cols=148 Identities=11% Similarity=0.029 Sum_probs=109.5
Q ss_pred CcHHHHHHHhhCCCceEeecCCceEEecCCCCCcccccc-cccccchhhhCCCCCeEeCHHHHHHHHHhccccccCCCCC
Q psy2293 61 QTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTS-EFTNNFLRFHKPPQSRILGPTALIEMSIKVENLSIPLRTR 139 (832)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~-~~~~~f~~~~~~~~~~i~gp~~v~~~~~~~~~~~~~lp~~ 139 (832)
+.+++.++++.+|+-.+..+-.. .-+|+|+++ .-+.+|..+... +++||.|.||.+|++.++ .+|..
T Consensus 23 ~~~~l~~~i~~lgG~~~~~~~~~-------~~THlv~~~~~rT~K~l~ai~~-g~~Iv~~~Wv~~~~~~g~----~l~e~ 90 (199)
T 3u3z_A 23 KQNVVIQVVDKLKGFSIAPDVCE-------TTTHVLSGKPLRTLNVLLGIAR-GCWVLSYDWVLWSLELGH----WISEE 90 (199)
T ss_dssp HHHHHHHHHHHHCSCEEESSCCT-------TEEEEEESSCCCBHHHHHHHHT-TCEEEETHHHHHHHHHTS----CCCSG
T ss_pred HHHHHHHHHHHcCCcEEecCCCC-------CCeEEEECCCCCCHHHHHHHHC-CCcEEeHHHHHHHhhCCC----CCChh
Confidence 44558889999987555432111 014444444 356779999999 999999999999999999 66544
Q ss_pred CC---------------------CccccCCCce-EEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCCh
Q psy2293 140 IR---------------------PLFCHSMQNI-VICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGE 197 (832)
Q Consensus 140 ~~---------------------P~~~~~~~g~-~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~ 197 (832)
.+ ...+.+|.|+ ++|++++.... ++.|..+|+..||++..++. .++++|+..
T Consensus 91 ~y~~~~~~~~~~~~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~-~~~L~~lI~~~GG~v~~~~~-~~~iiI~~~---- 164 (199)
T 3u3z_A 91 PFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPVMFVSPASSPP-VAKLCELVHLCGGRVSQVPR-QASIVIGPY---- 164 (199)
T ss_dssp GGBCTTTCTHHHHHHHHHHHCSSSCCCCTTTTSCCEEECTTCSSC-HHHHHHHHHHTTCCBCSSGG-GCSEEESCC----
T ss_pred hccccCCccccccchhhhhhhcccccchhhCCCeEEEECCCCCCC-HHHHHHHHHHcCCEEeccCC-CCEEEEeCC----
Confidence 22 1125789999 68888877433 57999999999999999985 466777542
Q ss_pred hhHHHhhcCCCeeeHHHHHHHHHcCCcCCCC
Q psy2293 198 KYKYAMGFRVPVLTKEFVLSAWEKRYDVNFK 228 (832)
Q Consensus 198 Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~~ 228 (832)
..+..+++|+|+|+||.||+.++...++.
T Consensus 165 --~~~~~~~~~~V~p~Wi~DsI~~~~llp~~ 193 (199)
T 3u3z_A 165 --SGKKKATVKYLSEKWVLDSITQHKVCAPE 193 (199)
T ss_dssp --CSCCCTTCEEECHHHHHHHHHHTSCCCGG
T ss_pred --chhccCCCcEEChhHHHHHHHcCCcCChH
Confidence 22567899999999999999998877665
No 66
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.23 E-value=4.8e-11 Score=124.79 Aligned_cols=161 Identities=11% Similarity=0.062 Sum_probs=112.4
Q ss_pred CcHHHHHHHhhCCCceEeecCCceEEecCCCCCcccccc-cccccchhhhCCCCCeEeCHHHHHHHHHhccccccCCCCC
Q psy2293 61 QTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTS-EFTNNFLRFHKPPQSRILGPTALIEMSIKVENLSIPLRTR 139 (832)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~-~~~~~f~~~~~~~~~~i~gp~~v~~~~~~~~~~~~~lp~~ 139 (832)
.-++|.+.++++||.++..-....- -..| ..++|++. .-+.+|-.+... +++||.+.||.+|+++++ .+|..
T Consensus 59 ~k~~l~~~I~~~GG~v~~~~~~~~~-~~~~-~t~LIa~~~~rt~K~l~ala~-g~~iVs~~Wl~dc~~~~~----~l~~~ 131 (259)
T 1kzy_C 59 NKQYTESQLRAGAGYILEDFNEAQC-NTAY-QCLLIADQHCRTRKYFLCLAS-GIPCVSHVWVHDSCHANQ----LQNYR 131 (259)
T ss_dssp CHHHHHHHHHTTTCEECSSCCTTTT-TTTC-EEEEEESSCCCSHHHHHHHHH-TCCEEETHHHHHHHHHTS----CCCGG
T ss_pred cHHHHHHHHHHCCCEEecCcccccc-ccCC-CeEEEcCCCCCcHHHHHHHhc-CCCCccHHHHHHHHHcCC----cCCHH
Confidence 5578999999999977753211000 0000 11233322 234568888778 999999999999999999 56544
Q ss_pred CCCcc----------------ccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecC----------cceeEEEecc
Q psy2293 140 IRPLF----------------CHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMN----------YQVTHLIANC 193 (832)
Q Consensus 140 ~~P~~----------------~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~----------~~~THLIa~~ 193 (832)
.+-+. ...|.|+.|+|++......+..+..+++.+||.+...+. ..++++|+..
T Consensus 132 ~Y~l~~g~s~~~~~~~~~~~~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~ 211 (259)
T 1kzy_C 132 NYLLPAGYSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDP 211 (259)
T ss_dssp GSBCCCEEETTTTEEECCCCCCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECT
T ss_pred HccCCCCcccccchhhhccccCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECC
Confidence 33221 347899999998765333446777899999999887764 2344555532
Q ss_pred C-CChhhHHHhhcCCCeeeHHHHHHHHHcCCcCCCC
Q psy2293 194 V-SGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFK 228 (832)
Q Consensus 194 ~-~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~~ 228 (832)
. .+.+++.|..+++|||+.+||.+|+..+..+++.
T Consensus 212 ~~~~~~~~~a~~~~i~iVs~EWv~~sI~~~~ll~~~ 247 (259)
T 1kzy_C 212 SCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFK 247 (259)
T ss_dssp TCCHHHHHHHHHHTCCEECHHHHHHHHHHTSCCCTT
T ss_pred CChHHHHHHHHhcCCCEecHHHHHHHHHhCCcCCCC
Confidence 2 3567888999999999999999999999877765
No 67
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.22 E-value=4.5e-11 Score=111.71 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=69.5
Q ss_pred ccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHh---hcCCCeeeHHHHHHHHHc
Q psy2293 145 CHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAM---GFRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~---~~~i~IV~~~Wv~dc~~~ 221 (832)
..+|+|++|+++|+.. ..+..|..++..+||++..+++..|||+|+.+... +...+. ..+++||+|+||.||++.
T Consensus 38 ~~lF~g~~i~i~G~~~-~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~-~~~~~~~~~~~~~~iV~~~Wv~dsi~~ 115 (132)
T 1wf6_A 38 EDLLDGCRIYLCGFSG-RKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDD-ELKQFWNKSAHRPHVVGAKWLLECFSK 115 (132)
T ss_dssp TTTTTTCEEEEESCCS-HHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCS-HHHHHHHHSCCCCCEEEHHHHHHHHHH
T ss_pred ccccCCEEEEEECCCh-HHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchH-HHHHHHHhhCCCCeEechHHHHHHHHc
Confidence 4589999999999985 45789999999999999999999999999987533 343333 357999999999999999
Q ss_pred CCcCCCC
Q psy2293 222 RYDVNFK 228 (832)
Q Consensus 222 ~~~~~~~ 228 (832)
+..+++.
T Consensus 116 ~~ll~e~ 122 (132)
T 1wf6_A 116 GYMLSEE 122 (132)
T ss_dssp SSCCCSG
T ss_pred CCcCCHh
Confidence 9988776
No 68
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.20 E-value=8.2e-11 Score=119.29 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=119.4
Q ss_pred ceeEEEeecccCcHHHHHHHhhCCCceEeecCCceEEecCCCCCccccccc-ccccchhhhCCCCCeEeCHHHHHHHHHh
Q psy2293 50 PCQICVCSNVDQTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSE-FTNNFLRFHKPPQSRILGPTALIEMSIK 128 (832)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~g~~i~~~~~-~~~~f~~~~~~~~~~i~gp~~v~~~~~~ 128 (832)
..+|||-|- ...++.+.++++|+.++..-. + -+|+|+++. -+.+|-.+... +++||+|+||.+|++.
T Consensus 12 ~~~v~~sG~--~~~~~~~~i~~lGg~~~~~~~-------~--~THlI~~~~~rt~K~l~a~~~-g~~IV~~~Wl~~~~~~ 79 (209)
T 2etx_A 12 APKVLFTGV--VDARGERAVLALGGSLAGSAA-------E--ASHLVTDRIRRTVKFLCALGR-GIPILSLDWLHQSRKA 79 (209)
T ss_dssp CCEEEECSS--CCHHHHHHHHHTTCEECSSTT-------T--CSEEECSSCCCSHHHHHHHHH-TCCEECTHHHHHHHHH
T ss_pred CcEEEEeCC--CcHHHHHHHHHCCCEEeCCCC-------C--ceEEEECCCCCCHHHHHHHhc-CCccccHHHHHHHHHc
Confidence 456777553 345678999999997654311 2 256555543 47789999999 9999999999999999
Q ss_pred ccccccCCCCCCCCcc---------------------ccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcce-
Q psy2293 129 VENLSIPLRTRIRPLF---------------------CHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQV- 186 (832)
Q Consensus 129 ~~~~~~~lp~~~~P~~---------------------~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~- 186 (832)
++ .+|...+.+. ..+|.|..|++++.... .++.+..+|+..||++...+....
T Consensus 80 ~~----~l~e~~y~~~~~~~~~~~~~~l~~~~~~a~~~~lF~g~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~ 154 (209)
T 2etx_A 80 GF----FLPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQP-PPPQMGEIISCCGGTYLPSMPRSYK 154 (209)
T ss_dssp TS----CCCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTCEEEECTTCSS-CHHHHHHHHHHTTCEECSSCCCSCC
T ss_pred CC----CCChhhccccChhhhhhcCCCHHHHHhhhhhCCCcCCcEEEEeCCCCC-CHHHHHHHHHHCCCEEECCCCCCCC
Confidence 99 7766544332 25899999999987632 357899999999999998886532
Q ss_pred -eEEEe-ccCCChhhHHHhhcCCCeeeHHHHHHHHHcCCcCCC
Q psy2293 187 -THLIA-NCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNF 227 (832)
Q Consensus 187 -THLIa-~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~~~~ 227 (832)
+|+|. ...+..++..+.++|+|||+++||.+|+.+.. +++
T Consensus 155 ~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~-ld~ 196 (209)
T 2etx_A 155 PQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQE-AKP 196 (209)
T ss_dssp TTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHTC-CCG
T ss_pred CceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhcc-cCh
Confidence 34444 44456678888899999999999999999744 443
No 69
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.19 E-value=2.1e-11 Score=123.94 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=78.4
Q ss_pred ccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeC---CCCcccccccCCCCeEeechhHHHhHhcCccc
Q psy2293 244 QGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD---SKVTCMPNVPCTSTYVVKARWFWMSIQNSECA 320 (832)
Q Consensus 244 ~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~---~~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~ 320 (832)
.|++|+++|++.+++..+.++++.+||.+. ...++.|||||+.. ..+.|+..|...|++||+++||.+|++.|.++
T Consensus 1 ~~~vi~~sg~~~~~~~~l~~~~~~~G~~~~-~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~ 79 (210)
T 2nte_A 1 GPLVLIGSGLSSEQQKMLSELAVILKAKKY-TEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCE 79 (210)
T ss_dssp CCCEEEESSCCHHHHHHHHHHHHHTTCEEE-SSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHcCCEEe-CCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcC
Confidence 378999999999999999999999999999 66678999999987 56788888988999999999999999999999
Q ss_pred cccccccCC
Q psy2293 321 DESKYLFGK 329 (832)
Q Consensus 321 ~E~~Y~~~~ 329 (832)
||++|.+..
T Consensus 80 ~e~~y~~~~ 88 (210)
T 2nte_A 80 QEEKYEIPE 88 (210)
T ss_dssp CGGGTBCTT
T ss_pred ChhhccCCC
Confidence 999999964
No 70
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.11 E-value=6.6e-11 Score=121.76 Aligned_cols=87 Identities=14% Similarity=0.201 Sum_probs=79.5
Q ss_pred ccceEEecCCChhhHHHHHHHHHhCCCEeecC-CCCCCceEEEEeCC-CCcccccccCCCCeEeechhHHHhHhcCcccc
Q psy2293 244 QGAKVNFFGFSEEDEEQLQELLLSNGGKPSLS-SDEPLTTHVVVDDS-KVTCMPNVPCTSTYVVKARWFWMSIQNSECAD 321 (832)
Q Consensus 244 ~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~-~~~~~~THlI~~~~-~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~ 321 (832)
++.+|++||++.+++..+.++|+.+||.++.+ ..+.+|||||+... .+.|+..|...|.+||+++||.+|++.|.++|
T Consensus 8 ~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~l~ 87 (235)
T 3al2_A 8 KQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQ 87 (235)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSCCC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCCCC
Confidence 67899999999999999999999999999832 35689999999985 58999999999999999999999999999999
Q ss_pred ccccccCCC
Q psy2293 322 ESKYLFGKN 330 (832)
Q Consensus 322 E~~Y~~~~~ 330 (832)
|+.|.+...
T Consensus 88 E~~ye~~~~ 96 (235)
T 3al2_A 88 EEDYEWGSS 96 (235)
T ss_dssp SGGGBTTSH
T ss_pred hhceeecCc
Confidence 999999764
No 71
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.10 E-value=1.2e-10 Score=100.82 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=69.8
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHc
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~ 221 (832)
.|.|.+|||||.-.. .|.++.++|+.+||.+...++.+|+|||++...|.|+.+|.++|||||+.+|+.++++.
T Consensus 7 ~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 7 ALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp SSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 589999999998866 78999999999999999999999999999998899999999999999999999999873
No 72
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.04 E-value=8.5e-10 Score=101.74 Aligned_cols=118 Identities=9% Similarity=0.151 Sum_probs=86.5
Q ss_pred HHhccCCCCccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCC
Q psy2293 609 YQDIENCPPQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHP 688 (832)
Q Consensus 609 ~~~i~~~~~~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~ 688 (832)
+..|+++.+.=+..-...++.+.+.... ...+..++||+|||+|+|++|++..+.
T Consensus 11 ~~~I~gWeG~~i~~lG~ii~~s~v~~~~-~~~~~~~eR~l~LF~~~Ll~~s~~~~~------------------------ 65 (132)
T 1v61_A 11 SEPIQAWEGDDIKTLGNVIFMSQVVMQH-GACEEKEERYFLLFSSVLIMLSASPRM------------------------ 65 (132)
T ss_dssp TSCCBTCCSSCSTTTCCCSCEEEEEBCC-SSSSCCCEEEEEECSSCEEEEECSSSS------------------------
T ss_pred hhhhcccccCChhhcCCeEEEeeEEEEE-cccCcceEEEEEEcCCeEEEEEecCCC------------------------
Confidence 4567777654444555666667665433 223446899999999999999975432
Q ss_pred CCCcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 689 IDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 689 ~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
..|+++..+||..| .|.+.+|+ ++.+|+|.|.... ...+.+.|.+.+ |+++||.+|.+++...
T Consensus 66 --~~f~~kgklPL~g~-~V~~~ed~--~~~~~aFeI~g~~-----~~~i~v~~~s~e-E~~~Wl~~L~~~i~~~ 128 (132)
T 1v61_A 66 --SGFMYQGKIPIAGM-VVNRLDEI--EGSDCMFEITGST-----VERIVVHCNNNQ-DFQEWMEQLNRLTKSG 128 (132)
T ss_dssp --SCCEEEEEECTTTC-BCSTTCSS--SSSCCCEEEECSS-----SCEEEECCCCSH-HHHHHHHHHHHHHTTS
T ss_pred --ceEEEEEEEeccee-EEEecccc--ccCccEEEEecCC-----CceEEEEeCCHH-HHHHHHHHHHHHHhhc
Confidence 12888999999999 67777777 6789999998543 246888886655 9999999999988643
No 73
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5.4e-10 Score=98.34 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=65.2
Q ss_pred cccccceEEecCCChhhHHHHHHHHHhCCCEeecCC----------CCCCceEEEEeCCCCcccccccCCCCeEeechhH
Q psy2293 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSS----------DEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWF 310 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~----------~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl 310 (832)
.+|+|++||+.+ +..+..++.+|.++||++..+. .+...||+|++.....+ ...+..+|.|+|+
T Consensus 11 ~LF~g~~F~i~~--e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~----~~~~r~~VqPqWV 84 (100)
T 2ep8_A 11 KLFEGLKFFLNR--EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT----SVIGRCYVQPQWV 84 (100)
T ss_dssp CTTSSCEEECCS--SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC----CBTTBEEECTHHH
T ss_pred HHcCCcEEEEec--CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh----hcCCCeEEcchHH
Confidence 379999999976 3457889999999999998331 35789999999864422 2356699999999
Q ss_pred HHhHhcCccccccccc
Q psy2293 311 WMSIQNSECADESKYL 326 (832)
Q Consensus 311 ~~si~~g~~~~E~~Y~ 326 (832)
+|||+.+.++++..|.
T Consensus 85 ~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 85 FDSVNARLLLPVAEYF 100 (100)
T ss_dssp HHHHHHTSCCCTTTCC
T ss_pred HHHHhcCCcCChhhcC
Confidence 9999999999999984
No 74
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=98.98 E-value=4.2e-10 Score=102.15 Aligned_cols=112 Identities=9% Similarity=0.100 Sum_probs=79.0
Q ss_pred ccccCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEE
Q psy2293 618 QLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIK 697 (832)
Q Consensus 618 ~L~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~ 697 (832)
+|...| +|+++|.+..+... +++++||+|||++.||+||++. + .. ...|.++.
T Consensus 3 ~L~~~G-~Ll~q~~f~V~~~~--~k~~eR~vFLFe~~ilf~K~~~-~---~~--------------------~~~Y~~K~ 55 (119)
T 1fho_A 3 DTGKLG-RIIRHDAFQVWEGD--EPPKLRYVFLFRNKIMFTEQDA-S---TS--------------------PPSYTHYS 55 (119)
T ss_dssp SCCCCC-CSSEEEEEEECSTT--CSCEEEEEEEETTEEEEEEECC-S---SS--------------------SCCCSSCC
T ss_pred ChHHcC-CccccCceEEEeCC--CCcceEEEEEecCcEEEEEEec-C---CC--------------------CCcEEEee
Confidence 344444 56778888887642 6789999999999999999883 2 11 12377777
Q ss_pred eecccccceEeeecCCCCcccCceEEEEecCCccccceEEEE--EecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 698 LLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSF--NIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 698 ~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l--~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
.+.++.+....++. +++...|.+|.... ...|++ +|++.+..|+.|+++|++.+..++.
T Consensus 56 ~ikl~~~~lte~~~----~~d~~kFeiw~~~~----~~~~il~~qA~s~e~~K~~Wv~~I~~~~~~~~~ 116 (119)
T 1fho_A 56 SIRLDKYNIRQHTT----DEDTIVLQPQEPGL----PSFRIKPKDFETSEYVRKAWLRDIAEEQEKYAA 116 (119)
T ss_dssp EEESSSCEEEEECT----TCCEEEEECCSTTC----CCBCCCCCSSSSCSHHHHHHHHHHHTCCHHHHC
T ss_pred EEeeceeEEEecCC----CCCCcEEEEccCCC----CceEEEeeecCCcHHHHHHHHHHHHHHHHHHhh
Confidence 89999984333332 23457899998764 347888 8765444899999999996666543
No 75
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=97.54 Aligned_cols=88 Identities=17% Similarity=0.310 Sum_probs=68.2
Q ss_pred hcccccceEEec--CCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCc-----cccc-ccCCCCeEeechhHH
Q psy2293 240 LKLFQGAKVNFF--GFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVT-----CMPN-VPCTSTYVVKARWFW 311 (832)
Q Consensus 240 ~~~F~g~~i~~~--g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~-----k~~~-a~~~~i~iV~~~Wl~ 311 (832)
.-.|.||+|+|. |.....++...+.+..+||++. +..++.+||+|+.+..+. .+.. ....++++|+.+|++
T Consensus 9 ~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~-~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv~ 87 (106)
T 2jw5_A 9 EEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLC-PAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLS 87 (106)
T ss_dssp GGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCC-STTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHHH
T ss_pred cCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEe-eccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchHH
Confidence 447999999985 4444556667789999999999 666779999999853321 1221 233578999999999
Q ss_pred HhHhcCccccccccccC
Q psy2293 312 MSIQNSECADESKYLFG 328 (832)
Q Consensus 312 ~si~~g~~~~E~~Y~~~ 328 (832)
+|++.|..+||+.|.+.
T Consensus 88 dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 88 LCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHTCSCCCGGGTBCS
T ss_pred HHHhcCcccCccccccc
Confidence 99999999999999764
No 76
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.90 E-value=1.3e-09 Score=92.52 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=61.2
Q ss_pred hhhcccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcC
Q psy2293 238 YKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 238 ~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g 317 (832)
.....|.|++|++.+=.. +...|.+++.++||.+..+....++||+|++.. ...+..+|+++|||+||++|
T Consensus 12 ~LpdiFsg~~~~l~~~v~-~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k~ 82 (88)
T 3pc7_A 12 VLLDIFTGVRLYLPPSTP-DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRKR 82 (88)
T ss_dssp CCCCCSTTCEECCCTTST-THHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHHT
T ss_pred cCChhhcCeEEEccCCcC-chhhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhCC
Confidence 345689999999965333 347899999999999974455568999996653 35688999999999999999
Q ss_pred ccccc
Q psy2293 318 ECADE 322 (832)
Q Consensus 318 ~~~~E 322 (832)
.++++
T Consensus 83 ~Ll~~ 87 (88)
T 3pc7_A 83 RLVAP 87 (88)
T ss_dssp SCCSC
T ss_pred cccCC
Confidence 99865
No 77
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.88 E-value=1.5e-09 Score=93.94 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=69.5
Q ss_pred cccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhc
Q psy2293 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
++|.|.+|+|||.-...|..+.++|+.+||+++ ...+.+++|||+.+..+.|+..|.+++|+||+.+||.+++..
T Consensus 6 ~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~-~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 6 EALKGLTFVITGELSRPREEVKALLRRLGAKVT-DSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEE-SCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEe-CcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 469999999999766699999999999999999 777889999999998889999999999999999999999974
No 78
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.88 E-value=3.5e-09 Score=94.53 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=69.4
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCC-hhhHHHhhcCCCeeeHHHHHHHHHcC
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSG-EKYKYAMGFRVPVLTKEFVLSAWEKR 222 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~-~Ky~~A~~~~i~IV~~~Wv~dc~~~~ 222 (832)
.|.|.+||+||.-..-.|.++.++|+.+||.+...++.+|+|||++...+ .|+.+|..+|||||+.+|+.+++..+
T Consensus 32 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 32 CLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 58999999999875445889999999999999999999999999998877 89999999999999999999988654
No 79
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.86 E-value=4.9e-10 Score=113.80 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=72.4
Q ss_pred ccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCC-CCcccccccCCCCeEeechhHHHhHhcCccccc
Q psy2293 244 QGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDS-KVTCMPNVPCTSTYVVKARWFWMSIQNSECADE 322 (832)
Q Consensus 244 ~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~-~~~k~~~a~~~~i~iV~~~Wl~~si~~g~~~~E 322 (832)
.+.+|+|||+...+. .++++.+||.++.+ . .+|||||+... ++.|+..|...|++||+++||++|++.|.++||
T Consensus 7 ~~~~v~fSG~~~~~~---~~~i~~lGg~v~~~-~-~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e 81 (220)
T 3l41_A 7 KRVYITFTGYDKKPS---IDNLKKLDMSITSN-P-SKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDE 81 (220)
T ss_dssp CCEEEEECSCSSCCC---CGGGGGGTEEECSC-T-TTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCS
T ss_pred ceEEEEEeccCCCCC---cchHhhcceeeccC-c-hhhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhcccc
Confidence 468899999998764 89999999999933 3 46999999874 689999999999999999999999999999999
Q ss_pred cccccCC
Q psy2293 323 SKYLFGK 329 (832)
Q Consensus 323 ~~Y~~~~ 329 (832)
++|.+.+
T Consensus 82 ~~y~l~d 88 (220)
T 3l41_A 82 EPYLLND 88 (220)
T ss_dssp GGGBCCC
T ss_pred CccccCC
Confidence 9999965
No 80
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=8.9e-09 Score=92.01 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCC-hhhHHHhhcCCCeeeHHHHHHHHHcC
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSG-EKYKYAMGFRVPVLTKEFVLSAWEKR 222 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~-~Ky~~A~~~~i~IV~~~Wv~dc~~~~ 222 (832)
.|.|.+|||||.-..-.|.++.++|+.+||.+...++++|+|||++...+ .|+.+|..+|||||+.+|+.++++.+
T Consensus 22 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 22 CLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp SSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred CcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 58999999999875445889999999999999999999999999998766 99999999999999999999999854
No 81
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.68 E-value=2.7e-08 Score=89.07 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccC---CChhhHHHhhcCCCeeeHHHHHHHHHcCC
Q psy2293 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV---SGEKYKYAMGFRVPVLTKEFVLSAWEKRY 223 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~---~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~ 223 (832)
.|.|.+|++||--.. .|.++.++|+.+||.+...++.+|+|||++.. .+.|+.+|.++|||||+.+|+.++-..+.
T Consensus 10 ~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~~~ 88 (113)
T 2cok_A 10 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSASTK 88 (113)
T ss_dssp SSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSCCS
T ss_pred CcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhhch
Confidence 589999999997755 68999999999999999999999999999943 67899999999999999999888866553
No 82
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=5.3e-08 Score=87.82 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=68.1
Q ss_pred cccccceEEecC--CChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccc-------cccCCCCeEeechhHH
Q psy2293 241 KLFQGAKVNFFG--FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMP-------NVPCTSTYVVKARWFW 311 (832)
Q Consensus 241 ~~F~g~~i~~~g--~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~-------~a~~~~i~iV~~~Wl~ 311 (832)
..|.|++|+|.. .....+..+.+++..+||++. +.+++.+||||+.+...+.+. .....+.++|+.+||.
T Consensus 19 ~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~-~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~Wl~ 97 (120)
T 2coe_A 19 IKFQDLVVFILEKKMGTTRRALLMELARRKGFRVE-NELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWLI 97 (120)
T ss_dssp CSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEEC-SSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHHHH
T ss_pred cccCCeEEEEeecccchHHHHHHHHHHHHcCCEEe-eccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHHHH
Confidence 369999999965 445577889999999999999 667999999999754332111 1233578999999999
Q ss_pred HhHhcCccccccc-cccCC
Q psy2293 312 MSIQNSECADESK-YLFGK 329 (832)
Q Consensus 312 ~si~~g~~~~E~~-Y~~~~ 329 (832)
+|++.|..+||+. |.+..
T Consensus 98 esmk~g~lv~ee~~~~l~~ 116 (120)
T 2coe_A 98 ECIGAGKPVEMTGKHQLSG 116 (120)
T ss_dssp HHHHTTSCCCCSSSSBCCC
T ss_pred HHHHcCCccCcccceEecc
Confidence 9999999999955 45543
No 83
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.58 E-value=3.4e-08 Score=88.08 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=68.3
Q ss_pred ccccceEEecCCC-hhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCC-cccccccCCCCeEeechhHHHhHhcC
Q psy2293 242 LFQGAKVNFFGFS-EEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKV-TCMPNVPCTSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 242 ~F~g~~i~~~g~~-~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~-~k~~~a~~~~i~iV~~~Wl~~si~~g 317 (832)
+|.|.+|+|||.- .-.|..+.++|+.+||+++ ...+.+++|||+++..+ .|+..|.+++|+||+.+||++.+..+
T Consensus 32 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~-~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 32 CLEGLIFVITGVLESIERDEAKSLIERYGGKVT-GNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE-SSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee-CcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 6999999999966 4479999999999999999 77788999999999777 89999999999999999999999765
No 84
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1e-07 Score=83.70 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=59.3
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEee-----------cCcceeEEEeccCCChhhHHHhhcCCCeeeHHH
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKE-----------MNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEF 214 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~-----------l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~W 214 (832)
.+|+|+++++.+-.+ ++.+..+|+++||.+..+ .+..+||+|+......+ ...+..+|.|+|
T Consensus 11 ~LF~g~~F~i~~e~p---~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~----~~~~r~~VqPqW 83 (100)
T 2ep8_A 11 KLFEGLKFFLNREVP---REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT----SVIGRCYVQPQW 83 (100)
T ss_dssp CTTSSCEEECCSSSC---HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC----CBTTBEEECTHH
T ss_pred HHcCCcEEEEecCCC---HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh----hcCCCeEEcchH
Confidence 479999999976443 457788899999999876 35799999998764322 224568999999
Q ss_pred HHHHHHcCCcCCCC
Q psy2293 215 VLSAWEKRYDVNFK 228 (832)
Q Consensus 215 v~dc~~~~~~~~~~ 228 (832)
|.||+..+..++..
T Consensus 84 V~Dcin~~~lLp~~ 97 (100)
T 2ep8_A 84 VFDSVNARLLLPVA 97 (100)
T ss_dssp HHHHHHHTSCCCTT
T ss_pred HHHHHhcCCcCChh
Confidence 99999999876654
No 85
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=7.6e-08 Score=85.99 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=67.8
Q ss_pred ccccceEEecCCCh-hhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCC-cccccccCCCCeEeechhHHHhHhc
Q psy2293 242 LFQGAKVNFFGFSE-EDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKV-TCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 242 ~F~g~~i~~~g~~~-~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~-~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
+|.|++|+|||.-. -.|..++++|+.+||+++ .....+++|||+.+..+ .|+..|.+++|+||+.+||++.+..
T Consensus 22 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~-~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 22 CLEGLIFVITGVLESIERDEAKSLIERYGGKVT-GNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp SSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC-SSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred CcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe-ccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhh
Confidence 69999999999764 489999999999999999 77788999999998777 8999999999999999999999986
No 86
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.36 E-value=7.3e-07 Score=75.62 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCCceEEEE-cCCCChHhHHHHHHHHHhcCCEEEeecC-cceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHcCCc
Q psy2293 147 SMQNIVICI-TGFRNKQETMKLIDITKHMGGKLRKEMN-YQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYD 224 (832)
Q Consensus 147 ~~~g~~i~~-tg~~~~~~~~~l~~~v~~~GG~~~~~l~-~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~~~ 224 (832)
+|.|+++.+ .++++ . ..+...+.+.||.+..++. .++||+|+... ...+...|+|+||.+|++++..
T Consensus 16 iFsg~~~~l~~~v~~-~--~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k~~L 84 (88)
T 3pc7_A 16 IFTGVRLYLPPSTPD-F--SRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRKRRL 84 (88)
T ss_dssp CSTTCEECCCTTSTT-H--HHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHHTSC
T ss_pred hhcCeEEEccCCcCc-h--hhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhCCcc
Confidence 799999999 45653 2 5888999999999988887 49999997653 3567899999999999999986
Q ss_pred CC
Q psy2293 225 VN 226 (832)
Q Consensus 225 ~~ 226 (832)
+.
T Consensus 85 l~ 86 (88)
T 3pc7_A 85 VA 86 (88)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 87
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.7e-06 Score=77.99 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=67.2
Q ss_pred CCccccCCCceEEEEcCCC-ChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhh-------cCCCeeeH
Q psy2293 141 RPLFCHSMQNIVICITGFR-NKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMG-------FRVPVLTK 212 (832)
Q Consensus 141 ~P~~~~~~~g~~i~~tg~~-~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~-------~~i~IV~~ 212 (832)
.+.+...|.|++|.+-... ...-++-+.+++..+||++.++++..|||+|+.+...+....-.. .+..||+.
T Consensus 14 ~~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i 93 (120)
T 2coe_A 14 SSPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDV 93 (120)
T ss_dssp SCSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEH
T ss_pred CCCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeec
Confidence 4455568999999994443 234467788999999999999999999999997554433332222 25789999
Q ss_pred HHHHHHHHcCCcCCCC
Q psy2293 213 EFVLSAWEKRYDVNFK 228 (832)
Q Consensus 213 ~Wv~dc~~~~~~~~~~ 228 (832)
.||.+||+.+..+++.
T Consensus 94 ~Wl~esmk~g~lv~ee 109 (120)
T 2coe_A 94 SWLIECIGAGKPVEMT 109 (120)
T ss_dssp HHHHHHHHTTSCCCCS
T ss_pred HHHHHHHHcCCccCcc
Confidence 9999999999987764
No 88
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=98.27 E-value=0.0011 Score=65.80 Aligned_cols=174 Identities=21% Similarity=0.305 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy2293 401 PRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVS 480 (832)
Q Consensus 401 kRq~vi~ELl~TE~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~ 480 (832)
.-..++..|++.|-+||.-|..+. .|-.-+.+. .++.++.++.+|..|+-+++.|++|...|++.. ....
T Consensus 187 sikslvesliqdecnyvgvltsls-efseimtkk-----qilgpdvlkelfdhipvliqhhqkfisslqeak----adek 256 (518)
T 4gou_A 187 SIKSLVESLIQDECNYVGVLTSLS-EFSEIMTKK-----QILGPDVLKELFDHIPVLIQHHQKFISSLQEAK----ADEK 256 (518)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHT-----TCSCHHHHHHHHTTHHHHHHHHHHHHHHHTSTT----GGGS
T ss_pred HHHHHHHHHHHhhccceeehhhHH-HHHHHHHhh-----hccChHHHHHHHhhchHHHHHHHHHHHHHHHhh----hhHH
Confidence 345678899999999999998876 455555443 789999999999999999999999998887643 3467
Q ss_pred hHHHHHHhHHHHhhhhhHHHhhHHHHHHHHHHHHhc------------hHHHHHHHHHHhccccCCCCCcCCCChhHHhh
Q psy2293 481 IGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN------------SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLI 548 (832)
Q Consensus 481 Ig~vfl~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~------------~~F~~fl~~~~~~~~~~~~~~~~~l~L~slLi 548 (832)
+|.-+..-.. |+-+|.-|..+.+.....+...--. |-..+|-+.... ..+++.-.+|.
T Consensus 257 vgeklnsglh-flvlyryylrhvpkniaklcsigmtdeievgrelyplpvieefdkqqkm---------tkkmsvlqmlv 326 (518)
T 4gou_A 257 VGEKLNSGLH-FLVLYRYYLRHVPKNIAKLCSIGMTDEIEVGRELYPLPVIEEFDKQQKM---------TKKMSVLQMLV 326 (518)
T ss_dssp HHHHHHHHTG-GGGGGHHHHTTTTHHHHHHHHHHTSCGGGTTTTTCSHHHHHHHHHHHHH---------HTSCCHHHHHH
T ss_pred HHHhhccCce-ehHHHHHHHHhccHHHHHHccCCCcchhhccccccCcchHHHHHHHHHH---------HHHHHHHHHHh
Confidence 8887766444 5678999999988877666543211 445566554443 56789999999
Q ss_pred hHHHHHhhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy2293 549 RPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNE 594 (832)
Q Consensus 549 ~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~l~~~iNe 594 (832)
-|--|+..|+...++.+|-|.+++.+...|+-...++.-+-.-+|.
T Consensus 327 ypyfrvrtyqayvddfikitkkdsqevkelevvhsqlaifqelint 372 (518)
T 4gou_A 327 YPYFRVRTYQAYVDDFIKITKKDSQEVKELEVVHSQLAIFQELINT 372 (518)
T ss_dssp GGGGHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhheehhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998888888777766555555543
No 89
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.26 E-value=3.6e-07 Score=81.81 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=67.0
Q ss_pred cccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeC---CCCcccccccCCCCeEeechhHHHhHhcC
Q psy2293 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD---SKVTCMPNVPCTSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~---~~~~k~~~a~~~~i~iV~~~Wl~~si~~g 317 (832)
++|.|++|.|+|--...|..+.++|+.+||+++ .....+++|||+.+ ..+.|+..|.+.+|+||+.+||.++...+
T Consensus 9 ~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~-~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~~ 87 (113)
T 2cok_A 9 KPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT-GTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAST 87 (113)
T ss_dssp CSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE-SCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSCC
T ss_pred CCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc-CccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhhc
Confidence 469999999999555589999999999999999 67788899999984 36789999999999999999988887765
Q ss_pred c
Q psy2293 318 E 318 (832)
Q Consensus 318 ~ 318 (832)
.
T Consensus 88 ~ 88 (113)
T 2cok_A 88 K 88 (113)
T ss_dssp S
T ss_pred h
Confidence 3
No 90
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.24 E-value=4.7e-07 Score=80.63 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=60.2
Q ss_pred ccCCCceEEEEcCCCC-hHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhh----HHH--hhcCCCeeeHHHHHH
Q psy2293 145 CHSMQNIVICITGFRN-KQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKY----KYA--MGFRVPVLTKEFVLS 217 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~-~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky----~~A--~~~~i~IV~~~Wv~d 217 (832)
...|+|++|.+-.... ...++-...++..+||++..+++..+||+|+.+..+.+- ..+ ...++.||+++|+.+
T Consensus 9 ~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv~d 88 (106)
T 2jw5_A 9 EEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSL 88 (106)
T ss_dssp GGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHHHH
T ss_pred cCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchHHH
Confidence 4488999998832221 122345566899999999999999999999975333222 111 123467999999999
Q ss_pred HHHcCCcCCCC
Q psy2293 218 AWEKRYDVNFK 228 (832)
Q Consensus 218 c~~~~~~~~~~ 228 (832)
||+.+..+++.
T Consensus 89 ci~~~~llde~ 99 (106)
T 2jw5_A 89 CLQERRLVDVA 99 (106)
T ss_dssp HHHTCSCCCGG
T ss_pred HHhcCcccCcc
Confidence 99999987765
No 91
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.20 E-value=9.7e-07 Score=79.91 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=70.0
Q ss_pred cccccceEEecCC--ChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcc--------cccc--cCCCCeEeech
Q psy2293 241 KLFQGAKVNFFGF--SEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTC--------MPNV--PCTSTYVVKAR 308 (832)
Q Consensus 241 ~~F~g~~i~~~g~--~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k--------~~~a--~~~~i~iV~~~ 308 (832)
..|.|++|++.+. ....|+.|.+++..+||.+. +...+.+||||+...+.+. .+.. ...+.++|+..
T Consensus 9 ~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~-~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdis 87 (133)
T 2dun_A 9 TRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVL-DACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDIS 87 (133)
T ss_dssp CSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEEC-SSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEHH
T ss_pred cccCccEEEEecCCcCHHHHHHHHHHHHhcCCEec-cccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEeccH
Confidence 3599999999764 45688899999999999999 8889999999996544422 1111 24679999999
Q ss_pred hHHHhHhcCccccccc-cccCC
Q psy2293 309 WFWMSIQNSECADESK-YLFGK 329 (832)
Q Consensus 309 Wl~~si~~g~~~~E~~-Y~~~~ 329 (832)
||.+|++.|..++++. |++..
T Consensus 88 Wltecm~~g~pV~~e~~~~l~~ 109 (133)
T 2dun_A 88 WLTESLGAGQPVPVECRHRLEV 109 (133)
T ss_dssp HHHHHHHHTSCCCCCTTTSCCC
T ss_pred HHHHHHhcCCcCCcccceEeec
Confidence 9999999999999854 55554
No 92
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.94 E-value=6.5e-05 Score=78.20 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=103.7
Q ss_pred ccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeec-CcceeEEEeccCCC----hhhHHHhhcCCCeeeHHHHHH
Q psy2293 143 LFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEM-NYQVTHLIANCVSG----EKYKYAMGFRVPVLTKEFVLS 217 (832)
Q Consensus 143 ~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l-~~~~THLIa~~~~~----~Ky~~A~~~~i~IV~~~Wv~d 217 (832)
.|..-...+++|++ .++.+..+.+.++.+||.+. ++ +..|||||.....+ .|...|.-.|+|||+++|+++
T Consensus 108 ~fRl~W~P~Vl~~S---ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~a 183 (325)
T 3huf_A 108 TINAYWRSMCIQFD---NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQY 183 (325)
T ss_dssp CEEEEECCCCEEES---CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHH
T ss_pred eEEEEEeeeEEEec---CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHH
Confidence 55566778889994 34445679999999999999 88 67899999975444 459999999999999999999
Q ss_pred HHHcCCcC---CCCCCC-hhhhhh-------------hhhcccccceEEecCCChhhHHHHHHHHHhCCCEeec------
Q psy2293 218 AWEKRYDV---NFKADE-PSFMNQ-------------YKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSL------ 274 (832)
Q Consensus 218 c~~~~~~~---~~~~~~-~~~~~~-------------~~~~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~------ 274 (832)
+....... .....+ .+|..+ .-.+.|+|..+.+..=+ ..+.-+++..|-.++.
T Consensus 184 l~~~e~~~~~~~~~wPdp~dflP~i~~g~Ep~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 259 (325)
T 3huf_A 184 LSTVKESVIEDASLMPDALECFKNIIKNNDQFPSSPEDCINSLEGFSCAMLNTS----SESHHLLELLGLRISTFMSLGD 259 (325)
T ss_dssp HTTCTTCCCCTTSSHHHHHHHHHHHHTTCTTCCSCHHHHTTTTTTCEEEEETCC----HHHHHHHHHTTCEEEEEC----
T ss_pred HHHhhhhhhhcccCCCChHHcCCCCCCCCCCCCCCHHHhhcccCceEEEEEcCc----hhhhHHHHHhcceeeeeeeccc
Confidence 86533222 111111 111100 11345899887776544 3456677788887651
Q ss_pred --CCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhc
Q psy2293 275 --SSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 275 --~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
..+-.++..+|.+..--+..+....-|+.+++.+-+|.-|-.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (325)
T 3huf_A 260 IDKELISKTDFVVLNNAVYDSEKISFPEGIFCLTIEQLWKIIIE 303 (325)
T ss_dssp --CCSSSSCSEEEEC-------------CCCEEEHHHHHHHHHS
T ss_pred chHhhhccccEEEEcccccccccccCCcceEEEEHHHHHHHHhh
Confidence 112234555555543222222223469999999999987754
No 93
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=97.89 E-value=2.1e-05 Score=78.89 Aligned_cols=168 Identities=15% Similarity=0.258 Sum_probs=105.7
Q ss_pred CceEEEEcCCC-ChHhHHHHHHHHHhcCCEEEeecC--cceeEEEeccC-CChhhHHHhhcCC--CeeeHHHHHHHHHc-
Q psy2293 149 QNIVICITGFR-NKQETMKLIDITKHMGGKLRKEMN--YQVTHLIANCV-SGEKYKYAMGFRV--PVLTKEFVLSAWEK- 221 (832)
Q Consensus 149 ~g~~i~~tg~~-~~~~~~~l~~~v~~~GG~~~~~l~--~~~THLIa~~~-~~~Ky~~A~~~~i--~IV~~~Wv~dc~~~- 221 (832)
-++.+++||+. ..-+...+ ...+.+|=.+.++.+ ..|+||||... ++.||..|...+= .|++|+||.+|++.
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~-~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~i 99 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDI-EILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQI 99 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHH-HHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHH
T ss_pred eeEEEEecCCcccccCHHHH-HHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHh
Confidence 46789999998 21121222 445889999999996 58999999987 9999999998873 49999999999987
Q ss_pred --CC------cC---CCCCCC--hhhh--hhhhhcccccceE---EecCCChhhHHHHHHHHHhCCCE-ee--cC--CCC
Q psy2293 222 --RY------DV---NFKADE--PSFM--NQYKLKLFQGAKV---NFFGFSEEDEEQLQELLLSNGGK-PS--LS--SDE 278 (832)
Q Consensus 222 --~~------~~---~~~~~~--~~~~--~~~~~~~F~g~~i---~~~g~~~~e~~~l~~li~~~GG~-~~--~~--~~~ 278 (832)
+. .+ ++...+ .+.. ...+-.+|+|..| .++.=-..--+.+..++++|||. +. .. ...
T Consensus 100 h~~~~~~~~~~l~~~dY~L~d~~~E~l~r~~~~gkLf~~~~I~ciNls~dI~GG~e~issIleahG~~~~~~l~~~~~~~ 179 (256)
T 3t7k_A 100 HSKKDKLSQININLFDYEINGINESIISKTKLPTKVFERANIRCINLVNDIPGGVDTIGSVLKAHGIEKINVLRSKKCTF 179 (256)
T ss_dssp C-------CCCCCSSTTBCTTCCHHHHHHTTSSSCHHHHTTCCEEEEETTCTTCHHHHHHHHHHTTCCEEEEECTTTCCG
T ss_pred hcCCcccccccCChhhccCCCcchhHHhhhccccccccCCcceeeeeccCCCCCHHHHHHHHHHcCCceeeecccccccH
Confidence 54 11 122222 1211 1223457999844 43443344567789999999996 32 11 000
Q ss_pred --------------CCceEEEEeCCCC--cccccc---c--CCCCeEeechhHHHhHhcC
Q psy2293 279 --------------PLTTHVVVDDSKV--TCMPNV---P--CTSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 279 --------------~~~THlI~~~~~~--~k~~~a---~--~~~i~iV~~~Wl~~si~~g 317 (832)
....++++....+ .++... . ..++-+|.=+|.-.||-.-
T Consensus 180 ~dl~~n~~~~~~~~~~~~~ILia~K~~q~k~Fkk~~~~~~~n~~~lvveWdWCVksIF~l 239 (256)
T 3t7k_A 180 EDIIPNDVSKQENGGIFKYVLIVTKASQVKKFTKLINDRDKNETILIVEWNWCVESIFHL 239 (256)
T ss_dssp GGCCCCC--------CCSEEEECSCHHHHHHHHHHHHHHSTTSCEEEECHHHHHHHHHTT
T ss_pred HHhhhccccccccCCCCCEEEEEccHHHHHHHHHHhhcccccceEEEEEcHHHHHHHhhe
Confidence 1122444443222 111111 1 2467899999999999874
No 94
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=97.84 E-value=2e-05 Score=71.31 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=67.7
Q ss_pred CccccCCCceEEEEcCCC-ChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhH-----HH-----hhcCCCee
Q psy2293 142 PLFCHSMQNIVICITGFR-NKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYK-----YA-----MGFRVPVL 210 (832)
Q Consensus 142 P~~~~~~~g~~i~~tg~~-~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~-----~A-----~~~~i~IV 210 (832)
|.+..-|.|++|.+-... .+.-|+-+.+++..+||++...++..|||+|+.+...+... .. ...+..+|
T Consensus 5 ~~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lL 84 (133)
T 2dun_A 5 SSGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALL 84 (133)
T ss_dssp CCSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEE
T ss_pred CCCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEe
Confidence 456678999999996544 23457889999999999999999999999999766553322 11 12557899
Q ss_pred eHHHHHHHHHcCCcCCCC
Q psy2293 211 TKEFVLSAWEKRYDVNFK 228 (832)
Q Consensus 211 ~~~Wv~dc~~~~~~~~~~ 228 (832)
...|+.+|.+.++.+++.
T Consensus 85 disWltecm~~g~pV~~e 102 (133)
T 2dun_A 85 DISWLTESLGAGQPVPVE 102 (133)
T ss_dssp EHHHHHHHHHHTSCCCCC
T ss_pred ccHHHHHHHhcCCcCCcc
Confidence 999999999999877663
No 95
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=0.00034 Score=62.68 Aligned_cols=104 Identities=9% Similarity=0.125 Sum_probs=72.3
Q ss_pred CCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 622 SHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 622 ~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
++...+++|.|.+.+. ..+..+.|+++|.++.|.+-+.... .+....++|
T Consensus 4 ~~~~~~~~G~L~K~~~-~~~~Wk~R~fvL~~~~L~yy~~~~~-----------------------------~~~~g~i~L 53 (115)
T 2dn6_A 4 GSSGVLKQGYMMKKGH-RRKNWTERWFVLKPNIISYYVSEDL-----------------------------KDKKGDILL 53 (115)
T ss_dssp CCCSCSEEEEEEEECT-TSSCEEEEEEEECSSCEEEESSTTC-----------------------------SSEEEEECC
T ss_pred CCCCceEEEEEEecCC-CCCCcEEeEEEEECCEEEEeCCCCC-----------------------------cccCcEEEe
Confidence 3456678999988653 2234588999999999888864321 223456788
Q ss_pred cccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 702 TSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 702 ~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
..+..|....+. ....+.|.|... ...|.|+|.+ +.|++.|+++|+.++.....
T Consensus 54 ~~~~~v~~~~~~--~~~~~~F~i~~~------~r~~~l~a~s-~~e~~~Wi~ai~~~~~~~~~ 107 (115)
T 2dn6_A 54 DENCCVESLPDK--DGKKCLFLVKCF------DKTFEISASD-KKKKQEWIQAIHSTIHLLKL 107 (115)
T ss_dssp CTTCEEEEECCC--TTCCSEEEEECS------SCEEEEECSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEECCCC--CCCeeEEEEEeC------CCEEEEEcCC-HHHHHHHHHHHHHHHHHHhc
Confidence 876555555443 334578888643 3478998765 55999999999999986643
No 96
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.51 E-value=1.4e-05 Score=92.95 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred ccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHHcC
Q psy2293 145 CHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKR 222 (832)
Q Consensus 145 ~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~~~ 222 (832)
...|.|.+||+||.-.. .|.++.++|+.+||.+....+++|++||++...|.|+.+|.++||||++-+|+.+.+..+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 34689999999998866 689999999999999999999999999999988899999999999999999999988754
No 97
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00023 Score=66.05 Aligned_cols=96 Identities=18% Similarity=0.359 Sum_probs=69.1
Q ss_pred CCCceEEEEcCCCChHhH--HHHHHHHHhcCCEE-EeecCcceeEEEeccCC----ChhhHHHhhcCCCeeeHHHHHHHH
Q psy2293 147 SMQNIVICITGFRNKQET--MKLIDITKHMGGKL-RKEMNYQVTHLIANCVS----GEKYKYAMGFRVPVLTKEFVLSAW 219 (832)
Q Consensus 147 ~~~g~~i~~tg~~~~~~~--~~l~~~v~~~GG~~-~~~l~~~~THLIa~~~~----~~Ky~~A~~~~i~IV~~~Wv~dc~ 219 (832)
-|+|+++|+.-+++-.+. -+|.+.....|+.- .....-++||.||++.+ .+....|.-.+||||.|+||..|-
T Consensus 161 dmsgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewvrace 240 (290)
T 4gns_A 161 DMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACE 240 (290)
T ss_dssp CCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred cccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHh
Confidence 589999999988843221 46778888999975 45556799999999874 455677888899999999999996
Q ss_pred HcCCcCCC----CCCChhhhhhhhhcc
Q psy2293 220 EKRYDVNF----KADEPSFMNQYKLKL 242 (832)
Q Consensus 220 ~~~~~~~~----~~~~~~~~~~~~~~~ 242 (832)
-..+..-. .-.|....+.|..||
T Consensus 241 vekrivgvrgfyldadqsilksytfpp 267 (290)
T 4gns_A 241 VEKRIVGVRGFYLDADQSILKSYTFPP 267 (290)
T ss_dssp HTTSCCCSGGGBTTSCGGGGGGGCCCC
T ss_pred hhheeeeeeeEEEcccHHHHhhcCCCC
Confidence 54443322 224555555665554
No 98
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.43 E-value=0.0018 Score=58.04 Aligned_cols=108 Identities=8% Similarity=0.058 Sum_probs=69.8
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
....+++|.|.+.+. ..+..+.|+++|.++.|.+-+..... +....++|.
T Consensus 5 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~~~~~-----------------------------~~~g~i~L~ 54 (118)
T 1v89_A 5 SSGPIKMGWLKKQRS-IVKNWQQRYFVLRAQQLYYYKDEEDT-----------------------------KPQGCMYLP 54 (118)
T ss_dssp SSCEEEEEEEEEECS-SSSCEEEEEEEEETTEEEEESSSSCC-----------------------------SCSEEECST
T ss_pred CCCCcEEEEEEecCC-CCCCccEEEEEEECCEEEEEeCCCCC-----------------------------CceEEEECC
Confidence 345688999988753 22346899999999998887644321 123356777
Q ss_pred ccceEeeecCCCCcccCceEEEEecCCcc--ccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 703 SIKKVYNVEDEAHDNDRQIFALRCRGSDE--VIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 703 ~i~~v~~i~d~~~~~~~~~F~l~~~~~~~--~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
.+ .+..+.+.......+.|.|....... .....|.|+|.+ +.|++.|+++|..++...
T Consensus 55 ~~-~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s-~~e~~~Wi~al~~~~~~~ 114 (118)
T 1v89_A 55 GC-TIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASS-QAEMEEWVKFLRRVAGSG 114 (118)
T ss_dssp TE-EEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSS-HHHHHHHHHHHHHHHHCC
T ss_pred CC-EEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCC-HHHHHHHHHHHHHHHccC
Confidence 76 34444332112345788887642111 135689999865 559999999999988643
No 99
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.38 E-value=2.5e-05 Score=90.78 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred cCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEEeecCcceeEEEeccCCChhhHHHhhcCCCeeeHHHHHHHHH
Q psy2293 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWE 220 (832)
Q Consensus 146 ~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~~ 220 (832)
..|.|.+||+||.-..-.|.++.++|+.+||.++...+++|++||++...|.|+.+|.++||||++-+|+.+++.
T Consensus 596 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 596 SPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 468999999999875435889999999999999999999999999999888999999999999999999887653
No 100
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=97.36 E-value=0.001 Score=64.02 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=70.1
Q ss_pred CCeEEeeeeEEEecccccC----CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEe
Q psy2293 623 HRSFVLKCDVIELSNMLSH----RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKL 698 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~----k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~ 698 (832)
....|.+|.|.+.+..... .-+.|+++|-++.|.+-+.+... ......
T Consensus 12 ~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~----------------------------~~~~G~ 63 (164)
T 2lul_A 12 NFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEK----------------------------KYRKGF 63 (164)
T ss_dssp CSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSS----------------------------CCCCCE
T ss_pred CCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcc----------------------------cccccE
Confidence 4456889999987643221 24789999999999988643321 011234
Q ss_pred ecccccceEeeecCCCC---cccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 699 LSMTSIKKVYNVEDEAH---DNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 699 i~L~~i~~v~~i~d~~~---~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
|+|..+..|..+.+... ....+.|.|... .+.|.|+|.+ +.|+++||++|++++.....
T Consensus 64 I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~------~rt~~l~A~s-~~e~~~Wi~aL~~~i~~n~~ 125 (164)
T 2lul_A 64 IDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHD------ANTLYIFAPS-PQSRDLWVKKLKEEIKNNNN 125 (164)
T ss_dssp EEGGGCCEEEECCCCSSSCCSSSCSEEEEECS------SCEEEEECSS-HHHHHHHHHHHHHHHTTCSC
T ss_pred EEEeeeEEEEeccccccCcccccceeEEEecC------CcEEEEECCC-HHHHHHHHHHHHHHHHHChh
Confidence 66777655555443310 123467777654 3488899865 55999999999999986554
No 101
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.0011 Score=59.56 Aligned_cols=104 Identities=11% Similarity=0.108 Sum_probs=67.8
Q ss_pred CCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 622 SHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 622 ~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
+....+++|.|.+.+....+..+.|+++|.++.|.+-+.... .+....++|
T Consensus 7 p~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~-----------------------------~~~~g~i~L 57 (117)
T 2d9y_A 7 GNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKE-----------------------------ESILGSIPL 57 (117)
T ss_dssp SSCCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTTC-----------------------------CSCCEEEEC
T ss_pred CCCCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCCC-----------------------------CCcCCEEEe
Confidence 456678999998875323344689999999998888764321 112335677
Q ss_pred cccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 702 TSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 702 ~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
..+ .+..+.........+.|.|.... ...|.|+|.+ +.|++.|+++|..++..
T Consensus 58 ~~~-~v~~~~~~~~~~~~~~F~i~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 58 LSF-RVAAVQPSDNISRKHTFKAEHAG-----VRTYFFSAES-PEEQEAWIQAMGEAARV 110 (117)
T ss_dssp SSC-EEEECCTTTTCCCSSEEEEECSS-----SCEEEEECSS-HHHHHHHHHHHHHTTCC
T ss_pred CCe-EEEEcCccccCCCccEEEEEcCC-----CcEEEEEcCC-HHHHHHHHHHHHHHHhh
Confidence 776 23333222112345788885432 4589999865 55999999999887653
No 102
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.34 E-value=0.0017 Score=58.21 Aligned_cols=99 Identities=9% Similarity=0.014 Sum_probs=67.6
Q ss_pred CCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 622 SHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 622 ~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
++...+++|.|.+.+....+..+.|+++|.++.|.+-+..... +....++|
T Consensus 4 ~~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~-----------------------------~~~g~i~l 54 (115)
T 2cod_A 4 GSSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEM-----------------------------YSKGIIPL 54 (115)
T ss_dssp CCSCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCS-----------------------------SCCCEEET
T ss_pred CCCCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCCCc-----------------------------ccCCEEEC
Confidence 3455678999988654233446899999999999988754321 11234677
Q ss_pred cccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 702 TSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 702 ~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
..+..|... + .+.|.|... .+.|.|+|.+ +.|++.|+++|..++....
T Consensus 55 ~~~~~v~~~-~------~~~F~i~~~------~r~~~l~a~s-~~e~~~Wi~~l~~~~~~~~ 102 (115)
T 2cod_A 55 SAISTVRVQ-G------DNKFEVVTT------QRTFVFRVEK-EEERNDWISILLNALKSQS 102 (115)
T ss_dssp TTEEEEEEE-T------TTEEEEEES------SCCEEEECSS-HHHHHHHHHHHHHHHHHHS
T ss_pred CcceEEEeC-C------CCEEEEEeC------CcEEEEECCC-HHHHHHHHHHHHHHHHhCc
Confidence 766333322 2 388998732 4579999865 5599999999999986553
No 103
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.0021 Score=58.15 Aligned_cols=103 Identities=12% Similarity=0.122 Sum_probs=67.1
Q ss_pred cCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeec
Q psy2293 621 NSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLS 700 (832)
Q Consensus 621 ~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~ 700 (832)
.+....+++|.|.+.+....+..+.|+++|-++.|.+-+..... +....++
T Consensus 17 ~~~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~-----------------------------~~~g~i~ 67 (122)
T 2yry_A 17 NPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEE-----------------------------SILGSIP 67 (122)
T ss_dssp CTTCCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCC-----------------------------SCCEEEE
T ss_pred CCCCCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCCCC-----------------------------CcccEEE
Confidence 35567899999988753333446899999999988887643221 1233566
Q ss_pred ccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 701 MTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 701 L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
|..+. |..+.........+.|.|.... ...|.|.|.+ +.|++.|+++|..++
T Consensus 68 L~~~~-v~~~~~~~~~~~~~~F~i~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 68 LLSFR-VAAVQPSDNISRKHTFKAEHAG-----VRTYFFSAES-PEEQEAWIQAMGEAA 119 (122)
T ss_dssp STTCC-CEECCTTCSCSSSSEEEEECSS-----SCEEEEECSS-HHHHHHHHHHHHHHH
T ss_pred cCCCE-EEEcCccccCCcccEEEEecCC-----CcEEEEEcCC-HHHHHHHHHHHHHHH
Confidence 76652 3333222112345788885432 4689999865 559999999998876
No 104
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00016 Score=60.96 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=63.9
Q ss_pred hhhhcccccceEEecC----C-ChhhHHHHHHHHHhCCCEeecCCCCCC-ceEEEEeCCCCcccccccCCCCeEeechhH
Q psy2293 237 QYKLKLFQGAKVNFFG----F-SEEDEEQLQELLLSNGGKPSLSSDEPL-TTHVVVDDSKVTCMPNVPCTSTYVVKARWF 310 (832)
Q Consensus 237 ~~~~~~F~g~~i~~~g----~-~~~e~~~l~~li~~~GG~~~~~~~~~~-~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl 310 (832)
+...++|+|++|++-- + +..+.+.|.++|..+||.+....-..+ -.+.|+..-+ ..+++.|++.+|
T Consensus 6 ~~~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN--------~t~LpTVtpTYI 77 (106)
T 2l42_A 6 QVSGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYN--------HTNLPTVTPTYI 77 (106)
T ss_dssp SCSSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTC--------CCSSSBCCTTHH
T ss_pred cccCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCC--------CCCCccccHHHH
Confidence 3456789999999953 2 346789999999999999983332221 1244444422 247899999999
Q ss_pred HHhHhcCccccccccccCC
Q psy2293 311 WMSIQNSECADESKYLFGK 329 (832)
Q Consensus 311 ~~si~~g~~~~E~~Y~~~~ 329 (832)
-.|++.+.+++-..|++..
T Consensus 78 ~aC~~~nTLLnv~~YLvp~ 96 (106)
T 2l42_A 78 KACCQSNSLLNMENYLVPY 96 (106)
T ss_dssp HHHHHSTTSCGGGGCCBCS
T ss_pred HHHHhcCceecccccccCc
Confidence 9999999999999999865
No 105
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=97.28 E-value=0.0025 Score=56.23 Aligned_cols=100 Identities=8% Similarity=0.168 Sum_probs=64.2
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCC--eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeec
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTD--VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLS 700 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D--~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~ 700 (832)
.+..+++|.|.+.+. ..+.-+.|+++|.++ .|.+-+.... .+....++
T Consensus 4 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yyk~~~~-----------------------------~~~~g~i~ 53 (109)
T 2i5f_A 4 TGVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYDPAGA-----------------------------EDPLGAIH 53 (109)
T ss_dssp CCCEEEEEEEEEECT-TTCCEEEEEEEEETTTTEEEEECTTSC-----------------------------SSCSEEEE
T ss_pred cCceeEEEEEEEcCC-CCCCceEEEEEEeCCCcEEEEECCCCC-----------------------------CCccEEEE
Confidence 456789999988653 223358999999998 7777753321 11233567
Q ss_pred ccccceEeeecCCC---CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 701 MTSIKKVYNVEDEA---HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 701 L~~i~~v~~i~d~~---~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
|..+ .+..+.+.. ..+..+.|.|.... ...|.|+|.+ +.|++.|+.+|..++
T Consensus 54 L~~~-~v~~~~~~~~~~~~~~~~~F~i~~~~-----~~~~~l~a~s-~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 54 LRGC-VVTSVESNSNGRKSEEENLFEIITAD-----EVHYFLQAAT-PKERTEWIKAIQMAS 108 (109)
T ss_dssp CTTC-EEEEECC--------CCSEEEEECTT-----CCEEEEECSS-HHHHHHHHHHHHHHH
T ss_pred CCCC-EEEEccCCcccccCCCceEEEEEeCC-----CCEEEEEcCC-HHHHHHHHHHHHHHh
Confidence 7775 344433320 01245788887542 3469999865 559999999998875
No 106
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=97.27 E-value=0.0025 Score=57.68 Aligned_cols=106 Identities=14% Similarity=0.040 Sum_probs=66.7
Q ss_pred cCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeec
Q psy2293 621 NSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLS 700 (832)
Q Consensus 621 ~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~ 700 (832)
.|....+++|.|.+.+....+..+.++++|-++.|.+-+.... .+....++
T Consensus 6 ~p~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~-----------------------------~~~~g~i~ 56 (123)
T 1upq_A 6 DPNLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSRE-----------------------------ESVLGSVL 56 (123)
T ss_dssp CTTSCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTC-----------------------------CSCCEEEE
T ss_pred CCCCCceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCCC-----------------------------cccceEEE
Confidence 3566789999999876323344689999999998888764321 11233466
Q ss_pred ccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 701 MTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 701 L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
|..+ .|............+.|.|.... ...|.|+|.+ +.|++.|+.+|..++...
T Consensus 57 l~~~-~v~~~~~~~~~~~~~~f~i~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~a~~~~ 111 (123)
T 1upq_A 57 LPSY-NIRPDGPGAPRGRRFTFTAEHPG-----MRTYVLAADT-LEDLRGWLRALGRASRAE 111 (123)
T ss_dssp GGGC-EEEECCSSCTTSSSSEEEEECTT-----SCCEEEECSS-HHHHHHHHHHHHHHHC--
T ss_pred CCCC-EEEECCCCccCCCcEEEEEECCC-----CeEEEEECCC-HHHHHHHHHHHHHHHhcc
Confidence 6665 23333222112234666664432 3578899865 559999999999988643
No 107
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.26 E-value=0.0019 Score=57.57 Aligned_cols=101 Identities=10% Similarity=0.127 Sum_probs=67.4
Q ss_pred EEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccc
Q psy2293 626 FVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIK 705 (832)
Q Consensus 626 li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~ 705 (832)
.+++|.|.+.+. ..+..+.|+++|.++.|.+-+.... .+....++|..+.
T Consensus 5 ~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~~~~-----------------------------~~~~g~i~L~~~~ 54 (113)
T 1pls_A 5 RIREGYLVKKGS-VFNTWKPMWVVLLEDGIEFYKKKSD-----------------------------NSPKGMIPLKGST 54 (113)
T ss_dssp CSEEEEEEEESS-SSSCCEEEEEEEETTEEEEESSTTC-----------------------------SSCSEEEESSSCC
T ss_pred CcEEEEEEEeCC-CCCCceEEEEEEECCEEEEEeCCCC-----------------------------CCcceEEEcCCCE
Confidence 457888887653 2234689999999999888764321 1223356777764
Q ss_pred eEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 706 KVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 706 ~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
.+....+. ....+.|.|.... ...|.|+|.+ +.|++.|+++|..++.....
T Consensus 55 ~~~~~~~~--~~~~~~F~i~~~~-----~r~~~l~a~s-~~e~~~Wi~ai~~~~~~~~~ 105 (113)
T 1pls_A 55 LTSPCQDF--GKRMFVFKITTTK-----QQDHFFQAAF-LEERDAWVRDINKAIKCIEG 105 (113)
T ss_dssp EESSCCSS--CCSSSEEEEEETT-----TEEEEEECSS-HHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCCC--CCCccEEEEEcCC-----CCEEEEECCC-HHHHHHHHHHHHHHHhccch
Confidence 33222222 3345789886542 3689999865 55999999999999987653
No 108
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=97.23 E-value=0.0023 Score=58.45 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=67.8
Q ss_pred cCCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeec
Q psy2293 621 NSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLS 700 (832)
Q Consensus 621 ~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~ 700 (832)
.+....+++|.|.+......+..+.|+++|-++.|.+-+.... .+....++
T Consensus 16 ~~~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~-----------------------------~~~~g~i~ 66 (128)
T 2dkp_A 16 NPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKE-----------------------------EGILGSIL 66 (128)
T ss_dssp CTTSCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTC-----------------------------CSEEEEEC
T ss_pred CCCCCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCC-----------------------------cccceEEE
Confidence 3566778999998876423344689999999998888764321 12344567
Q ss_pred ccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 701 MTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 701 L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
|..+ .+............+.|.|.... ...|.|+|.+ +.|++.|+++|..++.
T Consensus 67 L~~~-~v~~~~~~~~~~~~~~F~i~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 67 LPSF-QIALLTSEDHINRKYAFKAAHPN-----MRTYYFCTDT-GKEMELWMKAMLDAAL 119 (128)
T ss_dssp GGGS-EEEECCGGGCCSSCSEEEEECSS-----SCCEEEECSS-HHHHHHHHHHHHHHHS
T ss_pred cCce-EEEEcCCcccCCCCeEEEEEcCC-----CCEEEEEcCC-HHHHHHHHHHHHHHHh
Confidence 7665 33333222001335678886542 3578899865 5599999999988764
No 109
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=97.20 E-value=0.0022 Score=56.45 Aligned_cols=102 Identities=8% Similarity=0.046 Sum_probs=66.4
Q ss_pred eEEeeeeEEEecccc---cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 625 SFVLKCDVIELSNML---SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 625 ~li~~g~l~~~~~~~---~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
..+++|.|.+.+... .+..+.|+++|-++.|.+-+.... .+....++|
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~-----------------------------~~~~g~i~L 52 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKS-----------------------------KQPKGTFLI 52 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTC-----------------------------SSCSEEEEC
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCC-----------------------------CCCCEEEEe
Confidence 357899998876321 134578999999999888764331 112234677
Q ss_pred cccceEeeecC-CCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 702 TSIKKVYNVED-EAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 702 ~~i~~v~~i~d-~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
..+. +....+ .......+.|.|.... ...|.|+|.+ +.|++.|+++|+.++...
T Consensus 53 ~~~~-v~~~~~~~~~~~~~~~F~i~~~~-----~r~~~l~a~s-~~e~~~Wi~ai~~~i~~l 107 (108)
T 1u5d_A 53 KGYS-VRMAPHLRRDSKKESCFELTSQD-----RRTYEFTATS-PAEARDWVDQISFLLKDL 107 (108)
T ss_dssp TTCE-EEECGGGCSSGGGGGEEEEECSS-----SCCEEEECSS-HHHHHHHHHHHHHHHHHH
T ss_pred cceE-EEeCCccccccCCcceEEEEcCC-----CcEEEEECCC-HHHHHHHHHHHHHHHHhc
Confidence 7763 333221 1112345788887532 2578899865 559999999999998764
No 110
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=97.20 E-value=0.0016 Score=59.31 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=68.3
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
.+..+++|.|.+.+. ..+..+.|+++|.++.|.+-+.... .+....++|.
T Consensus 15 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~~~~-----------------------------~~~~g~i~L~ 64 (126)
T 1fao_A 15 PSLGTKEGYLTKQGG-LVKTWKTRWFTLHRNELKYFKDQMS-----------------------------PEPIRILDLT 64 (126)
T ss_dssp CCTTCEEEEEEEECS-SSCCEEEEEEEEETTEEEEESSTTC-----------------------------SSCSEEEEGG
T ss_pred CCCccEEEEEEEcCC-CCCCcccEEEEEECCEEEEeCCCCC-----------------------------CCceeEEEcc
Confidence 344578999988653 2334688999999999888864331 1223357777
Q ss_pred ccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 703 SIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 703 ~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
.+..+... +. ....+.|.|... ...|.|.|.+ +.|++.|+.+|..++....
T Consensus 65 ~~~~v~~~-~~--~~~~~~F~i~~~------~r~~~l~a~s-~~e~~~Wi~al~~~i~~~~ 115 (126)
T 1fao_A 65 ECSAVQFD-YS--QERVNCFCLVFP------FRTFYLCAKT-GVEADEWIKILRWKLSQIR 115 (126)
T ss_dssp GCCEEEEE-CS--SSSSSEEEEEET------TEEEEEECSS-HHHHHHHHHHHHHHHHTC-
T ss_pred ceEEEEec-cc--CCCCCEEEEEeC------CcEEEEECCC-HHHHHHHHHHHHHHHHHHH
Confidence 76433332 22 334588998753 4589999865 5599999999999998754
No 111
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=97.14 E-value=0.0014 Score=59.62 Aligned_cols=106 Identities=8% Similarity=0.092 Sum_probs=68.5
Q ss_pred CCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 622 SHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 622 ~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
+....+++|.|.+.+. ..+..+.|+++|.++.|.+-+..... +....++|
T Consensus 10 ~~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~~~~~-----------------------------~~~g~i~l 59 (125)
T 1eaz_A 10 QDSAVIKAGYCVKQGA-VMKNWKRRYFQLDENTIGYFKSELEK-----------------------------EPLRVIPL 59 (125)
T ss_dssp --CCCSEEEEEEEECT-TTCCEEEEEEEECSSEEEEESSTTCS-----------------------------SCSEEEEG
T ss_pred CCCCccEEEEEEEeCC-CCCCcceEEEEEeCCEEEEEcCCCCC-----------------------------cceeEEEc
Confidence 4566788999988653 22346889999999998887644321 12235677
Q ss_pred cccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 702 TSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 702 ~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
.++..|............+.|.|... ...|.|+|.+ +.|++.|+++|..++.....
T Consensus 60 ~~~~~v~~~~~~~~~~~~~~F~i~~~------~r~~~l~a~s-~~e~~~W~~al~~~i~~~~~ 115 (125)
T 1eaz_A 60 KEVHKVQECKQSDIMMRDNLFEIVTT------SRTFYVQADS-PEEMHSWIKAVSGAIVAQRG 115 (125)
T ss_dssp GGCCEEEECTTHHHHTCSSEEEEECS------SCEEEEECSS-HHHHHHHHHHHHHHHHHTC-
T ss_pred ccceEEeeccccccCCcCCEEEEEeC------CcEEEEEcCC-HHHHHHHHHHHHHHHHhccC
Confidence 77644443221100123578888743 4589999865 55999999999999987654
No 112
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=97.10 E-value=0.0035 Score=60.61 Aligned_cols=104 Identities=8% Similarity=-0.021 Sum_probs=68.3
Q ss_pred EEeeeeEEEeccccc----CCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 626 FVLKCDVIELSNMLS----HRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 626 li~~g~l~~~~~~~~----~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
.|++|-|.+.+.+.. +.-+.|+++|-++.|.+-|..... ....+.+..|+|
T Consensus 3 vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~-------------------------~~~~~~~G~I~L 57 (169)
T 1btk_A 3 VILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFER-------------------------GRRGSKKGSIDV 57 (169)
T ss_dssp CCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTT-------------------------TEEEEEEEEEEG
T ss_pred eEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCcc-------------------------CCCCceeeEEEC
Confidence 478999988653221 225899999999999999863210 001456667888
Q ss_pred cccceEeee---cCCCCcccC---------------------ceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 702 TSIKKVYNV---EDEAHDNDR---------------------QIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 702 ~~i~~v~~i---~d~~~~~~~---------------------~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
.++..|..+ .+.. .... +.|.|.... ..|.|+|.+ +.|++.||++|..
T Consensus 58 ~~~~~ve~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~------rt~yl~A~s-~~E~~eWi~aI~~ 129 (169)
T 1btk_A 58 EKITCVETVVPEKNPP-PERQIPRRGEESSEMEQISIIERFPYPFQVVYDE------GPLYVFSPT-EELRKRWIHQLKN 129 (169)
T ss_dssp GGEEEEEECCCCSSCC-GGGCC---------CCTTHHHHCCCEEEEEEETT------CCEEEEESC-HHHHHHHHHHHHH
T ss_pred cceEEEEeccCCCCcc-hhcccccccCcccccccccccccccccEEEEeCC------ceEEEEcCC-HHHHHHHHHHHHH
Confidence 887555544 2210 0001 678876543 478888865 5699999999999
Q ss_pred HHHHh
Q psy2293 758 QASAV 762 (832)
Q Consensus 758 ~i~~~ 762 (832)
++...
T Consensus 130 ~i~~n 134 (169)
T 1btk_A 130 VIRYN 134 (169)
T ss_dssp HHTTC
T ss_pred HHHHC
Confidence 88754
No 113
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.08 E-value=0.0048 Score=58.22 Aligned_cols=99 Identities=5% Similarity=-0.035 Sum_probs=65.1
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
.-..+++|-|.+.+.. .+..+.|++.|=++.|.+-|..... .....++|.
T Consensus 15 ~~pv~keG~L~Kkg~~-~k~WkrRWFvLk~~~L~Yyk~~~d~-----------------------------~~~g~I~L~ 64 (149)
T 1x1f_A 15 ALPLYFEGFLLIKRSG-YREYEHYWTELRGTTLFFYTDKKSI-----------------------------IYVDKLDIV 64 (149)
T ss_dssp SSCEEEEEEEEEECTT-CCSCEEEEEEEETTEEEEESCSSCS-----------------------------SCSEECCCS
T ss_pred CCCccEEEEEEEeCCC-CCCceeEEEEEcCCEEEEEeCCCcc-----------------------------ccCcEEECC
Confidence 3348999999887632 2446899999999999988754321 122356777
Q ss_pred ccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 703 SIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 703 ~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
+...+.+.... +...+.|.|... .+.|.|+|.+ +.|++.|+++|..++.
T Consensus 65 ~~~~~~~~~~~--~~~~~~F~I~t~------~r~~~f~A~s-~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 65 DLTCLTEQNST--EKNCAKFTLVLP------KEEVQLKTEN-TESGEEWRGFILTVTE 113 (149)
T ss_dssp SCCEEEECCCT--TSCCCEEEEECS------SCCEEEECSS-HHHHHHHHHHHHHHHH
T ss_pred CceEEeeccCC--CCcCcEEEEEcC------CCEEEEEcCC-HHHHHHHHHHHHHHHc
Confidence 76433222111 223478888653 3478999865 5599999999976554
No 114
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.03 E-value=9.4e-05 Score=85.94 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred cccccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHhcC
Q psy2293 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNS 317 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~~g 317 (832)
.+|.|.+|+|||.-...|..++++|+.+||+++ ...+.++++||+++..+.|+..|.+.||+|++-+||.+.+..+
T Consensus 586 ~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~-~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 586 DLLSGLTFVLTGELSRPREEVKALLGRLGAKVT-DSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEc-CcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 469999999999665589999999999999999 6778899999999988899999999999999999999999764
No 115
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=97.03 E-value=0.0046 Score=56.15 Aligned_cols=102 Identities=10% Similarity=0.071 Sum_probs=67.4
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
+++|.|.+.+.. .+..+.|+++|-++.|.+-+.... .+....++|..+ .
T Consensus 6 ~~~G~L~K~g~~-~~~Wk~R~fvL~~~~L~yy~~~~~-----------------------------~~~~g~i~L~~~-~ 54 (127)
T 1fgy_A 6 DREGWLLKLGGR-VKTWKRRWFILTDNCLYYFEYTTD-----------------------------KEPRGIIPLENL-S 54 (127)
T ss_dssp SEEEEEEEECSS-SCCEEEEEEEEETTEEEEESSTTC-----------------------------SSCSEEEECTTC-E
T ss_pred ceEeEEEEECCC-CCCeEEEEEEEECCEEEEeCCCCC-----------------------------CCcceEEECCce-E
Confidence 578888876532 234688999999999888764321 112235677776 4
Q ss_pred EeeecCCCCcccCceEEEEecCCc----------------cccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 707 VYNVEDEAHDNDRQIFALRCRGSD----------------EVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 707 v~~i~d~~~~~~~~~F~l~~~~~~----------------~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
+..+.+. ...+.|.|...... ....+.|.|+|.+ +.|++.|+++|..++....
T Consensus 55 v~~~~~~---~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s-~~e~~~Wi~al~~~i~~~~ 123 (127)
T 1fgy_A 55 IREVLDP---RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPS-PEEKEEWMKSIKASISRDP 123 (127)
T ss_dssp EEEECCS---SCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSS-HHHHHHHHHHHHHHHHHCT
T ss_pred EEEccCC---CCCceEEEecCCccccccccccccCCcceecCCceEEEEECCC-HHHHHHHHHHHHHHhccCC
Confidence 4444433 34688888754321 0124689999865 5599999999999887543
No 116
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.97 E-value=0.0029 Score=57.89 Aligned_cols=106 Identities=10% Similarity=0.167 Sum_probs=65.0
Q ss_pred ccCCCeEEeeeeEEEecccccCCccEEEEEEeCC--eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEE
Q psy2293 620 INSHRSFVLKCDVIELSNMLSHRGDCITLFLFTD--VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIK 697 (832)
Q Consensus 620 ~~~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D--~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~ 697 (832)
+...+..+++|.|.+.+.. .+..+.|+++|.+| .|.+-+..... .+...
T Consensus 12 ~~~~~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~d~~~L~yy~~~~~~----------------------------~~~~g 62 (129)
T 1x1g_A 12 VELSGTVVKQGYLAKQGHK-RKNWKVRRFVLRKDPAFLHYYDPSKEE----------------------------NRPVG 62 (129)
T ss_dssp CTTCSEEEEEEEEEEECSS-SSSEEEEEEEEEESSCEEEEECSSSCC----------------------------SSCSC
T ss_pred cccCCCEEEEEEEEEECCC-CCCeeeEEEEEeCCCCeEEEeCCCCcC----------------------------Cccce
Confidence 4567889999999987532 34468899999965 66666532111 11122
Q ss_pred eecccccceEeeecCCC-Ccc-----cCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 698 LLSMTSIKKVYNVEDEA-HDN-----DRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 698 ~i~L~~i~~v~~i~d~~-~~~-----~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
.++|... .+..+.+.. ... ..+.|.|.... ...|.|+|.+ +.|++.|+++|+.++..
T Consensus 63 ~i~L~~~-~v~~~~~~~~p~~~~~~~~~~~F~I~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 63 GFSLRGS-LVSALEDNGVPTGVKGNVQGNLFKVITKD-----DTHYYIQASS-KAERAEWIEAIKKLTSG 125 (129)
T ss_dssp CEESTTC-CCEECCSSSSCSSCSSCCCSSCEEECCTT-----CCCEEECCSS-HHHHHHHHHHHHHHSSS
T ss_pred EEECcCC-EEEEeCCCCCcccccCCCCCceEEEEcCC-----CCEEEEEcCC-HHHHHHHHHHHHHHHhc
Confidence 3556554 233332220 001 35788886532 3468899865 55999999999988643
No 117
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=96.93 E-value=0.0036 Score=53.75 Aligned_cols=91 Identities=10% Similarity=0.095 Sum_probs=59.0
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
.++|-|.+.+. ..+.-+.|+++|-++.|.+-+...... .+....++|.....
T Consensus 2 ~k~G~L~K~g~-~~k~WkkR~FvL~~~~L~Yy~~~~~~~---------------------------~~~~~~i~l~~~~~ 53 (94)
T 2rsg_A 2 ERCGVLSKWTN-YIHGWQDRWVVLKNNALSYYKSEDETE---------------------------YGCRGSICLSKAVI 53 (94)
T ss_dssp CEEEEEEEESS-STTCEEEEEEEEETTEEEEESSTTGGG---------------------------TCCSEEEETTTCEE
T ss_pred CEEEEEEEeCC-CCCCceEEEEEEECCEEEEEEeccccc---------------------------ccceeeEecceeee
Confidence 46788877653 223358899999999998876443210 11123456665522
Q ss_pred EeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 707 VYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 707 v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
+.+ ....+.|.|... .+.|.|+|.+.+ |++.|+++|+.|
T Consensus 54 ~~~------~~~~~~F~i~~~------~r~~~l~A~s~~-e~~~Wi~aLq~A 92 (94)
T 2rsg_A 54 TPH------DFDECRFDISVN------DSVWYLRAQDPD-HRQQWIDAIEQH 92 (94)
T ss_dssp EEC------SSCSSEEEEEET------TEEEEEECCSSC-CTHHHHHHHHHH
T ss_pred ecC------cccceeEEEEeC------CeEEEEECCCHH-HHHHHHHHHHhh
Confidence 222 233578988654 458999987765 999999999876
No 118
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=96.90 E-value=0.0064 Score=55.52 Aligned_cols=105 Identities=8% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCeEEeeeeEEEecccccCCccEEEEEEeCC--eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEee
Q psy2293 622 SHRSFVLKCDVIELSNMLSHRGDCITLFLFTD--VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLL 699 (832)
Q Consensus 622 ~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D--~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i 699 (832)
.....+++|.|.+.+. ..+..+.|+++|.++ +|.+-+.... .+....|
T Consensus 14 ~~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yy~~~~~-----------------------------~~~~g~i 63 (129)
T 1x05_A 14 FRGVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYDPAGA-----------------------------EDPLGAI 63 (129)
T ss_dssp TCSEEEEEEEEEECCS-SCCCCEEEEEEEEETTTEEEEECSSCC-----------------------------SSCSEEE
T ss_pred ccCCceEEEEEEecCC-CCCCCeeEEEEEeCCCCEEEEECCCCC-----------------------------CcceeEE
Confidence 3567899999988653 223468999999987 6777653321 1223356
Q ss_pred cccccceEeeecCCC---CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 700 SMTSIKKVYNVEDEA---HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 700 ~L~~i~~v~~i~d~~---~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
+|..+ .+..+.+.. ..+..+.|.|.... ...|.|+|.+ +.|++.|+++|..++....
T Consensus 64 ~L~~~-~v~~~~~~~~~~~~~~~~~F~i~~~~-----~~~~~l~a~s-~~e~~~Wi~al~~~~~~~~ 123 (129)
T 1x05_A 64 HLRGC-VVTSVESNSNGRKSEEENLFEIITAD-----EVHYFLQAAT-PKERTEWIKAIQMASRTGK 123 (129)
T ss_dssp ECTTC-EEEECCCCCCSSSCSSCSEEEEECTT-----CCCCEEECSS-HHHHHHHHHHHHHHHTCCS
T ss_pred EccCC-EEEEccCCccccccCCCeEEEEEcCC-----CCEEEEECCC-HHHHHHHHHHHHHHHHccC
Confidence 77765 333333220 01245788887542 3468898865 5599999999999886543
No 119
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.85 E-value=0.0066 Score=55.03 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=62.9
Q ss_pred EEeeeeEEEecccccCCccEEEEEEeCCeEEEEE----ecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 626 FVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCK----KRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 626 li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k----~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
+.++|-|.+.+....+..+.|+++|=+++|-+-| .+.+ . .....|+|
T Consensus 8 ~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~-----~------------------------~p~G~I~L 58 (126)
T 1wi1_A 8 MKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKK-----A------------------------EPQELLQL 58 (126)
T ss_dssp EEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSS-----S------------------------CCSEEEEC
T ss_pred CceeEEEEEeCCCcccccceEEEEEeCCEEEEEEcccccccC-----C------------------------CCceEEEC
Confidence 5789999887653334568899999888877766 2221 1 11235666
Q ss_pred cccceEeeecC-CCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 702 TSIKKVYNVED-EAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 702 ~~i~~v~~i~d-~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
... .|..+.. ....+.++.|.+.... ..|.|.|.+ +.|++.||++|.+++...
T Consensus 59 ~g~-tV~~~~~~~~~~~~k~~F~~v~~~------~ty~~~Ads-eee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 59 DGY-TVDYTDPQPGLEGGRAFFNAVKEG------DTVIFASDD-EQDRILWVQAMYRATGQS 112 (126)
T ss_dssp SSC-EEEECCCCSSCCSCSSEEEEECSS------CEEEEECSS-HHHHHHHHHHHHHHHTCS
T ss_pred CCc-EEEEecCCcccccCceEEEEecCC------ceEEEEcCC-HHHHHHHHHHHHHHhccc
Confidence 665 2322211 1002346788876432 258898755 669999999999988644
No 120
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=96.81 E-value=0.0046 Score=56.35 Aligned_cols=111 Identities=5% Similarity=0.055 Sum_probs=67.0
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
..+++|.|.+.+. ..+..+.|+++|=++.|.+-+...... ....|.. -+....|+|...
T Consensus 11 ~~~k~G~L~K~g~-~~k~Wk~RwfVL~~~~L~yyk~~~~~~-~e~~plg-------------------~~~~G~I~L~~~ 69 (124)
T 2w2x_D 11 EHKQQGELYMWDS-IDQKWTRHFCAIADAKLSFSDDIEQTM-EEDNPLG-------------------SLCRGILDLNTY 69 (124)
T ss_dssp --CCEEEEEEEET-TTTEEEEEEEEEETTEEEEEEEHHHHH-HCSSCCC-------------------CSCSEEEEGGGE
T ss_pred hcceeEEEEEECC-CCCCceEeEEEEECCEEEEEccccccc-ccccccC-------------------CccccEEECCCC
Confidence 4467888877652 223468999999999998888643210 0011111 122346788877
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
.+....+.. ..-.+.|.|..... ....|.|.|.+.+ |++.|+++|..++...
T Consensus 70 -~v~~~~~~~-~~k~~~F~I~~~~~---~~~~~~~~A~s~e-e~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 70 -NVVKAPQGK-NQKSFVFILEPKQQ---GDPPVEFATDKVE-ELFEWFQSIREITWKI 121 (124)
T ss_dssp -EEEECTTCB-TTBSEEEEEEECC-----CCCEEEEECCCH-HHHHHHHHHHHHHC--
T ss_pred -EEEEccCCc-CCCCEEEEEECCCC---CCceEEEEECCHH-HHHHHHHHHHHHHHhh
Confidence 344443320 22357888876432 1357889987766 9999999999887654
No 121
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=96.80 E-value=0.013 Score=53.71 Aligned_cols=113 Identities=5% Similarity=-0.039 Sum_probs=67.4
Q ss_pred CeEEeeeeEEEec---cc--ccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEe
Q psy2293 624 RSFVLKCDVIELS---NM--LSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKL 698 (832)
Q Consensus 624 R~li~~g~l~~~~---~~--~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~ 698 (832)
...+++|.|.+.. .+ ..+.-+.+++.|=++.|.+-|........ . ..+ .........
T Consensus 10 ~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~-----~-----------~~~--~~~~~p~g~ 71 (129)
T 2p0d_A 10 HEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPS-----S-----------GWG--PAGSRPESS 71 (129)
T ss_dssp CSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------------------------CCSEE
T ss_pred cceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCccccccc-----c-----------ccc--ccCCCCccE
Confidence 3667899997631 11 11335789999999999998755321000 0 000 001233346
Q ss_pred ecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 699 LSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 699 i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
++|... .+....+. ..-++.|.|.... ...|.|+|.+ +.|++.|+++|..++....
T Consensus 72 I~L~~~-~v~~~~~~--~kr~~~F~l~t~~-----~~~yl~qA~s-~~e~~~Wi~aI~~~i~~~~ 127 (129)
T 2p0d_A 72 VDLRGA-ALAHGRHL--SSRRNVLHIRTIP-----GHEFLLQSDH-ETELRAWHRALRTVIERLV 127 (129)
T ss_dssp EECTTC-EEEECTTS--CSSSSEEEEECTT-----SCEEEEECSC-HHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCc-EEEECCCC--CCCCcEEEEEcCC-----CCEEEEECCC-HHHHHHHHHHHHHHHHhcc
Confidence 777776 23333332 2345889986532 3579999865 5599999999999998764
No 122
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=96.80 E-value=0.0002 Score=83.33 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred cccccceEEecCCChh-hHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcccccccCCCCeEeechhHHHhHh
Q psy2293 241 KLFQGAKVNFFGFSEE-DEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQ 315 (832)
Q Consensus 241 ~~F~g~~i~~~g~~~~-e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~a~~~~i~iV~~~Wl~~si~ 315 (832)
.+|.|.+|+|||--.. .|..++++|+.+||+++ ...+.++++||+++..+.|+..|.+.||+|++-+||.+.+.
T Consensus 596 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~-~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 596 SPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVA-GSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEe-CcccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 4699999999996654 79999999999999999 66788999999999888999999999999999999998764
No 123
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.0065 Score=54.82 Aligned_cols=99 Identities=8% Similarity=0.036 Sum_probs=66.0
Q ss_pred eEEeeeeEEEeccc-ccCCccEEEEEEeCC--eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 625 SFVLKCDVIELSNM-LSHRGDCITLFLFTD--VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 625 ~li~~g~l~~~~~~-~~~k~~~~~lfLF~D--~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
..+++|-|.+.+.. ..+..+.|+++|-++ .|.+-+..... +....|+|
T Consensus 7 ~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~-----------------------------~~~g~I~L 57 (119)
T 2dhk_A 7 GKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDA-----------------------------NPLDSIDL 57 (119)
T ss_dssp CCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCC-----------------------------SCSEEEEG
T ss_pred CCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCc-----------------------------ccccEEEC
Confidence 34578888886531 223458899999988 77777543221 22335777
Q ss_pred cccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 702 TSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 702 ~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
..+..+.+ . ....+.|.|... .+.|.|+|.+ +.|++.|+++|..++..+..
T Consensus 58 ~~~~~~~~---~--~~~~~~F~i~~~------~r~~~l~a~s-~~e~~~Wi~al~~~~~~~~~ 108 (119)
T 2dhk_A 58 SSAVFDCK---A--DAEEGIFEIKTP------SRVITLKAAT-KQAMLYWLQQLQMKRWEFHN 108 (119)
T ss_dssp GGCEEEEC---T--TGGGCEEEEECS------SCCEEEECSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEec---C--CCCCCEEEEEeC------CcEEEEECCC-HHHHHHHHHHHHHHHHHhcC
Confidence 77644432 1 223578888653 4589999865 55999999999999987764
No 124
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=96.78 E-value=0.01 Score=55.72 Aligned_cols=106 Identities=8% Similarity=-0.034 Sum_probs=67.8
Q ss_pred CCCeEEeeeeEEEeccccc---CCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEe
Q psy2293 622 SHRSFVLKCDVIELSNMLS---HRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKL 698 (832)
Q Consensus 622 ~~R~li~~g~l~~~~~~~~---~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~ 698 (832)
..+..+++|.|.+.+...+ +..+.|+++|-++.|.+-+.... .+....
T Consensus 13 ~~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~-----------------------------~~~~g~ 63 (148)
T 1u5f_A 13 DLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKD-----------------------------KQQKGE 63 (148)
T ss_dssp GCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTC-----------------------------SSCSEE
T ss_pred hCCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCC-----------------------------cccceE
Confidence 3467899999998764321 24588999999998888754321 122334
Q ss_pred ecccccceEeeecCCC-CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 699 LSMTSIKKVYNVEDEA-HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 699 i~L~~i~~v~~i~d~~-~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
++|..+ .+....+.. .....+.|.|.... .+.|.|+|.+ +.+++.|+++|..++....
T Consensus 64 i~L~~~-~v~~~~~~~~~~~~~~~F~I~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~~i~~~~ 122 (148)
T 1u5f_A 64 FAIDGY-DVRMNNTLRKDGKKDCCFEICAPD-----KRIYQFTAAS-PKDAEEWVQQLKFILQDLG 122 (148)
T ss_dssp EECTTC-EEEECTTSCSSTTGGGEEEEECTT-----SCEEEEECSS-HHHHHHHHHHHHHHCC---
T ss_pred EEcCCc-EEEECCCcccCCCCccEEEEECCC-----CcEEEEECCC-HHHHHHHHHHHHHHHHHhc
Confidence 677776 334332210 02234788886532 3589999865 5599999999999887654
No 125
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.68 E-value=0.0054 Score=54.83 Aligned_cols=99 Identities=8% Similarity=0.086 Sum_probs=62.0
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEe--CCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLF--TDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF--~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
..+++|.|.+.+.. .+..+.|+++|. ++.|.+-+..... +....|+|.
T Consensus 7 ~~~~~G~L~K~g~~-~~~Wk~R~fvL~~~~~~L~yy~~~~~~-----------------------------~~~g~i~L~ 56 (117)
T 1v5u_A 7 GRSYEGILYKKGAF-MKPWKARWFVLDKTKHQLRYYDHRMDT-----------------------------ECKGVIDLA 56 (117)
T ss_dssp SSSEEEEEEECCCS-SSCCEEEEEEEETTTTEEEEESSSSCS-----------------------------SCCCEEEGG
T ss_pred CccEEEEEEecCCC-CCCceeeEEEEECCCCEEEEeecCCCC-----------------------------ccceEEEcc
Confidence 34678988886532 334689999999 7788887643321 122346676
Q ss_pred ccceEeeecCCC----CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 703 SIKKVYNVEDEA----HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 703 ~i~~v~~i~d~~----~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.+..+....+.. .....+.|.|... ...|.|+|.+ +.|++.|+++|..++.
T Consensus 57 ~~~~v~~~~~~~~~~~~~~~~~~F~i~~~------~r~~~l~a~s-~~e~~~Wi~al~~~i~ 111 (117)
T 1v5u_A 57 EVEAVAPGTPTIGAPKTVDEKAFFDVKTT------RRVYNFCAQD-VPSAQQWVDRIQSCLS 111 (117)
T ss_dssp GEEEEECCCCCTTSCSSSCTTTCEEEEES------SCEEEEECSS-HHHHHHHHHHHHTTCC
T ss_pred CcEEEeecCccccccccCCCCeEEEEECC------CceEEEECCC-HHHHHHHHHHHHHHhc
Confidence 663333221110 0223478988543 4589999865 5599999999987654
No 126
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=96.65 E-value=0.02 Score=51.45 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=69.6
Q ss_pred EEeeeeEEEecccc-cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 626 FVLKCDVIELSNML-SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 626 li~~g~l~~~~~~~-~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
.+++|-|.+...+. .+..+.++++|=+++|.+-|-... -.....|||.++
T Consensus 12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~e-----------------------------ke~~G~IpL~~~ 62 (125)
T 1dyn_A 12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEE-----------------------------KEKKYMLSVDNL 62 (125)
T ss_dssp EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTC-----------------------------SCEEEEEECTTE
T ss_pred eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcc-----------------------------cccceEEECCCc
Confidence 68999998843222 223688999999999998874332 233457899998
Q ss_pred ceEeeecCCCCcccCceEEEEecCCc--cccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSD--EVIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~--~~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
.+.++.++. ...++.|.|...... .+....|.|.|.+. .|++.|+++|.+|
T Consensus 63 -~vr~v~~~~-~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~-ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 63 -KLRDVEKGF-MSSKHIFALFNTEQRNVYKDYRQLELACETQ-EEVDSWKASFLRA 115 (125)
T ss_dssp -EEEECCSCS-SSSCEEEEEEETTSSCSSTTCSSEEEEESSH-HHHHHHHHHHHHT
T ss_pred -eEeccCCCC-CCCceEEEEECCCCccccccceEEEEeCCCH-HHHHHHHHHHHhC
Confidence 566766541 235688998875321 12356899998664 4999999999654
No 127
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.65 E-value=0.0075 Score=56.74 Aligned_cols=103 Identities=9% Similarity=-0.001 Sum_probs=67.5
Q ss_pred CCCeEEeeeeEEEeccc-----ccCCccEEEEEEeCC-----eEEEEEecCCCcccccCCCCCcccccccccccCCCCCC
Q psy2293 622 SHRSFVLKCDVIELSNM-----LSHRGDCITLFLFTD-----VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDK 691 (832)
Q Consensus 622 ~~R~li~~g~l~~~~~~-----~~~k~~~~~lfLF~D-----~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~ 691 (832)
+....+++|.|.+.... ..+..+.|+++|-++ .|.+-+.....
T Consensus 14 ~~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~--------------------------- 66 (150)
T 1wg7_A 14 QKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS--------------------------- 66 (150)
T ss_dssp CSCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS---------------------------
T ss_pred CCCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCC---------------------------
Confidence 44667899999886531 123468899999987 77776543211
Q ss_pred cceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 692 TYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 692 ~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
.+....|+|..+..+. . +. ....+.|.|.... ...|.|+|.+ +.|++.|+.+|..++...
T Consensus 67 -~~~~g~I~L~~~~~~~-~-~~--~~~~~~F~i~~~~-----~r~~~l~A~s-~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 67 -KEPKGSIFLDSCMGVV-Q-NN--KVRRFAFELKMQD-----KSSYLLAADS-EVEMEEWITILNKILQLN 126 (150)
T ss_dssp -SCCSEEECTTTCCEEC-C-CC--SSCTTEEEEECSS-----SCEEEEECSS-HHHHHHHHHHHHHHHHHH
T ss_pred -CCcCcEEecccCEEEe-c-CC--CCCceEEEEEeCC-----CcEEEEEeCC-HHHHHHHHHHHHHHHHhh
Confidence 1223357777763332 2 22 2345788887643 2589999865 559999999999988754
No 128
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.63 E-value=0.014 Score=51.54 Aligned_cols=95 Identities=11% Similarity=0.160 Sum_probs=61.9
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
+++|.|.+.+.. .+..+.|++.|-++.|.+-+..... +....++|..+..
T Consensus 9 ~~~G~L~K~~~~-~~~Wk~RwfvL~~~~L~yyk~~~~~-----------------------------~~~~~i~L~~~~~ 58 (109)
T 1wgq_A 9 TMSGYLYRSKGS-KKPWKHLWFVIKNKVLYTYAASEDV-----------------------------AALESQPLLGFTV 58 (109)
T ss_dssp SCEEEEEEESST-TSCCEEEEEEEETTEEEEESCTTCS-----------------------------SCSEEEECSSEEE
T ss_pred eEEEEEEeCCCC-CCCceeEEEEEeCCEEEEECCCCcC-----------------------------ccCceEECCCCEE
Confidence 568888876422 2346889999998888887643321 1223567777633
Q ss_pred EeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 707 VYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 707 v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
+ ...+. ....+.|.|.... ...|.|+|.+ +.|++.|+.+|..++.
T Consensus 59 ~-~~~~~--~~~~~~F~i~~~~-----~~~~~~~a~s-~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 59 T-LVKDE--NSESKVFQLLHKG-----MVFYVFKADD-AHSTQRWIDAFQEGTV 103 (109)
T ss_dssp E-ECCCS--SCSSSEEEEEETT-----EEEEEEECSS-HHHHHHHHHHHHHHHS
T ss_pred E-ECCCC--CCCCcEEEEEeCC-----CeEEEEECCC-HHHHHHHHHHHHHHhc
Confidence 3 33232 2235789887532 3579999865 5599999999988764
No 129
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.017 Score=51.59 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=62.7
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
..+++|.|.+.+....+..+.|+++|-++.|.+-+..... | .. .+.+.+.
T Consensus 9 ~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~------~---------------------~~---~i~l~~~ 58 (114)
T 2da0_A 9 GSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNR------Q---------------------PA---KLNLLTC 58 (114)
T ss_dssp CSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSCCS------C---------------------CE---EEETTTS
T ss_pred CccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCCCC------C---------------------CC---EEEeeee
Confidence 4578999988764322446889999988888886542211 0 01 1122222
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
.+.. . ++..+.|.|... .+.|.|+|.+ +.|++.|+.+|..++......
T Consensus 59 -~v~~--~---~~~~~~F~I~~~------~r~~~l~a~s-~~e~~~Wi~al~~~~~~~~~~ 106 (114)
T 2da0_A 59 -QVKP--N---AEDKKSFDLISH------NRTYHFQAED-EQDYVAWISVLTNSKEEALTM 106 (114)
T ss_dssp -EEEE--C---SSSSSCEEEEET------TEEEEEECSS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred -EEEE--C---CCCCCEEEEEcC------CcEEEEEcCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 1221 1 223578998742 5689999865 559999999999999876543
No 130
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.47 E-value=0.0084 Score=52.88 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=59.6
Q ss_pred CeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 624 R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
+..+++|-|.+. ..+.-+.|+++|-++.|.+-+..... .+....+++..
T Consensus 6 ~~~~~~G~L~K~---~~k~Wk~RwfvL~~~~L~yyk~~~~~----------------------------~~~~~~i~l~~ 54 (107)
T 2cof_A 6 SGLETSSYLNVL---VNSQWKSRWCSVRDNHLHFYQDRNRS----------------------------KVAQQPLSLVG 54 (107)
T ss_dssp CCCTTCCEEEEE---ETTEEEEEEEEECSSCEEEECSSTTC----------------------------SEEEEEECTTT
T ss_pred CCCcEeEEEEEe---cCCCcceEEEEEECCEEEEEeCCccc----------------------------CCCeeEEeccc
Confidence 344567777765 22446889999999988777644321 12222344444
Q ss_pred cceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 704 IKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 704 i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
. .|....+ ....+.|.|.... .+.|.|+|.+ +.|++.|+++|..++.
T Consensus 55 ~-~v~~~~~---~~~~~~F~i~~~~-----~r~~~l~A~s-~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 55 C-EVVPDPS---PDHLYSFRILHKG-----EELAKLEAKS-SEEMGHWLGLLLSESG 101 (107)
T ss_dssp C-EEECCCB---TTBSCEEEEEETT-----EEEEEEECSS-HHHHHHHHHHHHHHSS
T ss_pred e-EEEECCC---CCCCeEEEEEeCC-----CeEEEEEcCC-HHHHHHHHHHHHHHHc
Confidence 3 1222222 2345788887631 4679999865 5599999999987654
No 131
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=96.47 E-value=0.0058 Score=55.51 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=64.1
Q ss_pred CeEEeeeeEEEecccccCCccEEEEEEeCC-eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTD-VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 624 R~li~~g~l~~~~~~~~~k~~~~~lfLF~D-~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
...+++|.|.+.+. ..+..+.|+++|-.| .|.+-+..... +....+||.
T Consensus 6 ~~~~~~G~L~K~g~-~~k~WkkRwfvL~~~~~L~yy~~~~~~-----------------------------~~~g~i~L~ 55 (125)
T 1unq_A 6 VAIVKEGWLHKRGE-YIKTWRPRYFLLKNDGTFIGYKERPQD-----------------------------VDQREAPLN 55 (125)
T ss_dssp GCEEEEEEEEEECS-SSCCEEEEEEEEETTSEEEEESSCCCS-----------------------------HHHHTSCSE
T ss_pred CCeeEEeeEEeccC-CccCccCcEEEEecCCEEEEEeCCCCC-----------------------------CCCceeEcc
Confidence 34678999988653 233458899999966 77766543321 011123333
Q ss_pred ccce----EeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 703 SIKK----VYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 703 ~i~~----v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
.+.. +... + ....+.|.|..... .....|.|+|.+ +.|++.|+.+|..++......
T Consensus 56 ~~~~~~~~~~~~-~---~~~~~~F~I~~~~~--~~~~~~~~~a~s-~~e~~~Wi~al~~~~~~~~~~ 115 (125)
T 1unq_A 56 NFSVAQCQLMKT-E---RPRPNTFIIRCLQW--TTVIERTFHVET-PEEREEWTTAIQTVADGLKKQ 115 (125)
T ss_dssp EEECTTCEEEEE-C---SSSTTEEEEEEEET--TEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeeeeccc-c---cCCCCEEEEEecCC--CCceeEEEEeCC-HHHHHHHHHHHHHHHhhcccc
Confidence 3311 1111 1 23458899875421 235688999865 559999999999999876543
No 132
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=96.42 E-value=0.042 Score=49.95 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=60.9
Q ss_pred ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcc--eeEEeecccccceEeeecCCCCcccCc
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTY--KHIKLLSMTSIKKVYNVEDEAHDNDRQ 720 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~y--k~~~~i~L~~i~~v~~i~d~~~~~~~~ 720 (832)
.+.+++.|-.+.|.+-+.+...... ...| .-...+||.+. .|. ..+. ....+
T Consensus 24 Wkr~W~vL~g~~L~yf~~~~~~~~~----------------------~~~~~~~P~~~i~L~g~-~V~-~~e~--~~~~~ 77 (126)
T 2dtc_A 24 WTRYWVVLSGATLLYYGAKSLRGTD----------------------RKHYKSTPGKKVSIVGW-MVQ-LPDD--PEHPD 77 (126)
T ss_dssp CEEEEEEEETTEEEEEEBSSSCCSS----------------------GGGBCSSCSEEEECTTC-EEE-CCCC--TTSTT
T ss_pred cccEEEEEeCCEEEEEccccccccc----------------------ccccccCCCceEEeCCC-EEE-ecCC--CCCCC
Confidence 4889999999999999876422100 0001 22346788887 444 3333 23568
Q ss_pred eEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 721 IFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 721 ~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
.|.|..... ...|.|+|.+ +.+...|+++|..++....
T Consensus 78 ~F~L~~~~~----G~~Y~fqA~s-~~~~~~W~~ai~~a~~~~~ 115 (126)
T 2dtc_A 78 IFQLNNPDK----GNVYKFQTGS-RFHAILWHKHLDDACKSSR 115 (126)
T ss_dssp EEEEECTTS----CSEEEEECSS-HHHHHHHHHHHHHHHTSCC
T ss_pred EEEEeeCCC----CCEEEEeCCC-HHHHHHHHHHHHHHHhcCC
Confidence 999985433 4579999865 5599999999999887543
No 133
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=96.41 E-value=0.024 Score=51.21 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=63.9
Q ss_pred EEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccc
Q psy2293 626 FVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIK 705 (832)
Q Consensus 626 li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~ 705 (832)
-+++|.|.+.+. ..+..+.|+++|-.+.|.+-|-..... .. .....|+|.+.
T Consensus 6 ~~k~G~L~Kk~~-~~k~W~~rwfVL~~~~L~yyK~~~~~~--d~------------------------~P~gsI~L~~c- 57 (120)
T 4a6h_A 6 EIKSGFLERRSK-FLKSYSKGYYVLTPNFLHEFKTADRKK--DL------------------------VPVMSLALSEC- 57 (120)
T ss_dssp CSEEEEEEEEET-TTTEEEEEEEEECSSEEEEESSCCTTT--CC------------------------SCSEEEEGGGE-
T ss_pred ccEEEEEEEcCC-CCCCCccEEEEEeCCEEEEEcCCCcCc--CC------------------------CceEEEECCCC-
Confidence 467888887653 223368899999999777776432110 01 12235777776
Q ss_pred eEeeecCCCC------cccCceEEEEecCCcc-ccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 706 KVYNVEDEAH------DNDRQIFALRCRGSDE-VIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 706 ~v~~i~d~~~------~~~~~~F~l~~~~~~~-~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
.|....+... ++..+.|.|....... .....|.|+|.+ +.|++.|+++|+.++
T Consensus 58 ~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s-~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 58 TVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADS-YESMMSWFDNLKILT 117 (120)
T ss_dssp EEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSS-HHHHHHHHHHHHHHC
T ss_pred EEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCC-HHHHHHHHHHHHHHh
Confidence 3333332200 0145789888765310 134689999866 459999999998764
No 134
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=96.35 E-value=0.028 Score=50.10 Aligned_cols=98 Identities=8% Similarity=0.074 Sum_probs=58.9
Q ss_pred eeeeEEEeccc---ccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 628 LKCDVIELSNM---LSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 628 ~~g~l~~~~~~---~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
++|.|.+..+. ..+.-+.+++.|=++.|.+-|..... .| ...++|...
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~-----~p------------------------~~~i~l~~~ 52 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDV-----IP------------------------LLSVNMGGE 52 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCC-----SC------------------------SEEEETTC-
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCC-----Cc------------------------cceEEecCC
Confidence 46777644321 12235789999988888887644321 11 123555532
Q ss_pred ceE-eeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 705 KKV-YNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 705 ~~v-~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
... ....+. ..-++.|.|.... ...|.|+|.+ +.|.+.|+++|..++...
T Consensus 53 ~~~~~~~~~~--~~r~~~F~l~~~~-----~~~y~f~A~s-~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 53 QCGGCRRANT--TDRPHAFQVILSD-----RPCLELSAES-EAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp CEEEEEECCC--SSCTTEEEEEETT-----SCCEEEECSS-HHHHHHHHHHHHHHHTCC
T ss_pred EEEeeeccCC--CCCCeEEEEEcCC-----CCEEEEEcCC-HHHHHHHHHHHHHHhhcc
Confidence 111 112222 3346899997653 2479999866 559999999999887654
No 135
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0026 Score=53.72 Aligned_cols=75 Identities=11% Similarity=0.218 Sum_probs=55.3
Q ss_pred cCCCceEEEEcC----CCChHhHHHHHHHHHhcCCEEEeecCcce--eEEEeccCCChhhHHHhhcCCCeeeHHHHHHHH
Q psy2293 146 HSMQNIVICITG----FRNKQETMKLIDITKHMGGKLRKEMNYQV--THLIANCVSGEKYKYAMGFRVPVLTKEFVLSAW 219 (832)
Q Consensus 146 ~~~~g~~i~~tg----~~~~~~~~~l~~~v~~~GG~~~~~l~~~~--THLIa~~~~~~Ky~~A~~~~i~IV~~~Wv~dc~ 219 (832)
.+|.|+.+.+-. .+...+.+.|.++|..+||.+...+.++. .+.|+..... .++|.|+|.+|.+|+
T Consensus 10 ~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~--------t~LpTVtpTYI~aC~ 81 (106)
T 2l42_A 10 PPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNH--------TNLPTVTPTYIKACC 81 (106)
T ss_dssp CSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCC--------CSSSBCCTTHHHHHH
T ss_pred ccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCC--------CCCccccHHHHHHHH
Confidence 369999999932 22233467999999999999999997554 2333332222 379999999999999
Q ss_pred HcCCcCCCC
Q psy2293 220 EKRYDVNFK 228 (832)
Q Consensus 220 ~~~~~~~~~ 228 (832)
..+..++..
T Consensus 82 ~~nTLLnv~ 90 (106)
T 2l42_A 82 QSNSLLNME 90 (106)
T ss_dssp HSTTSCGGG
T ss_pred hcCceeccc
Confidence 998877665
No 136
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=96.31 E-value=0.034 Score=50.67 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=30.2
Q ss_pred cCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 718 DRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 718 ~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
..+.|.|.... .+.|.|+|.+ +.|++.|+++|..++...
T Consensus 88 ~~~~F~I~t~~-----~r~~~l~A~s-~~e~~~Wi~ai~~~i~~~ 126 (128)
T 2rlo_A 88 ENFEFLIVSST-----GQTWHFEAAS-FEERDAWVQAIESQILAS 126 (128)
T ss_dssp CCCCEEEECTT-----SCEEEEEESS-HHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcCC-----CCEEEEEcCC-HHHHHHHHHHHHHHHHHH
Confidence 45788886532 2589999866 559999999999998764
No 137
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=96.30 E-value=0.011 Score=51.61 Aligned_cols=94 Identities=10% Similarity=0.106 Sum_probs=59.5
Q ss_pred eeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEe
Q psy2293 629 KCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVY 708 (832)
Q Consensus 629 ~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~ 708 (832)
+|.|.+.+. ..+.-+.|+++|.++.|.+-+...... ......++|... .+.
T Consensus 2 eG~L~K~g~-~~k~Wk~R~fvL~~~~L~Yy~~~~~~~---------------------------~~~~g~i~L~~~-~v~ 52 (103)
T 3rcp_A 2 EGVLYKWTN-YLTGWQPRWFVLDNGILSYYDSQDDVC---------------------------KGSKGSIKMAVC-EIK 52 (103)
T ss_dssp EEEEEEECC-TTTCEEEEEEEEETTEEEEESSCC------------------------------CCCSCEEEGGGC-EEE
T ss_pred ceEEEEccC-CCCCeeceEEEEECCEEEEEecCCccc---------------------------CCcccEEEeeee-EEE
Confidence 577766553 223468899999999998887543210 011234666654 222
Q ss_pred eecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 709 NVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 709 ~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
.. ....+.|.|.... ...|.|+|.+ +.|++.|+++|..+++..
T Consensus 53 ~~-----~~~~~~F~i~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 53 VH-----SADNTRMELIIPG-----EQHFYMKAVN-AAERQRWLVALGSSKASL 95 (103)
T ss_dssp CC-----TTCSSEEEEEETT-----TEEEEEECSS-HHHHHHHHHHHHTTSCCC
T ss_pred Ec-----CCCCceEEEEeCC-----CCEEEEECCC-HHHHHHHHHHHHHHHHhc
Confidence 11 1235889987532 4689999865 559999999998877553
No 138
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.23 E-value=0.013 Score=52.77 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=62.3
Q ss_pred EEeeeeEEEecccccCCccEEEEEEeC--CeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 626 FVLKCDVIELSNMLSHRGDCITLFLFT--DVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 626 li~~g~l~~~~~~~~~k~~~~~lfLF~--D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
.+++|-|.+.+. ..+..+.|+++|-. ..|.+-+..... ..+....|+|..
T Consensus 8 ~~~~G~L~K~~~-~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~---------------------------~~~~~g~I~L~~ 59 (120)
T 2d9x_A 8 ENVYGYLMKYTN-LVTGWQYRFFVLNNEAGLLEYFVNEQSR---------------------------NQKPRGTLQLAG 59 (120)
T ss_dssp CCCEEEEEEEEE-TTTEEEEEEEEECTTTCEEEEESSGGGS---------------------------SSCCSEEEECTT
T ss_pred CcEEEEEEecCC-CCCCceEEEEEEECCCCEEEEEecCccc---------------------------CCCccceEEcce
Confidence 356788877653 22345789999984 466666543321 012234577777
Q ss_pred cceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 704 IKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 704 i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
+. | ... +...+.|.|.... .+.|.|+|.+ +.|++.|+++|+.++.....
T Consensus 60 ~~-v-~~~----~~~~~~F~i~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~~~~~~~~ 108 (120)
T 2d9x_A 60 AV-I-SPS----DEDSHTFTVNAAS-----GEQYKLRATD-AKERQHWVSRLQICTQHHTE 108 (120)
T ss_dssp CC-E-ECC----SSSSSCEEECCSS-----SCCEEECCSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred EE-E-Eec----CCCCCEEEEEcCC-----CCEEEEECCC-HHHHHHHHHHHHHHHHHhhh
Confidence 63 2 211 2234888886432 2579999865 55999999999999877654
No 139
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=96.18 E-value=0.027 Score=56.36 Aligned_cols=102 Identities=8% Similarity=-0.010 Sum_probs=67.4
Q ss_pred CeEEeeeeEEEeccc---ccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeec
Q psy2293 624 RSFVLKCDVIELSNM---LSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLS 700 (832)
Q Consensus 624 R~li~~g~l~~~~~~---~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~ 700 (832)
...+++|.|.+.+.. ..+..+.|+++|-++.|.+-+.... .+....|+
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~-----------------------------~~p~g~I~ 154 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKD-----------------------------KQQKGEFA 154 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTC-----------------------------SSCSEEEE
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCC-----------------------------ccceEEEE
Confidence 467899999887642 1235689999999998888764332 12234577
Q ss_pred ccccceEeeecC-CCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 701 MTSIKKVYNVED-EAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 701 L~~i~~v~~i~d-~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
|..+..+. ..+ .......+.|.|.... .+.|.|+|.+ +.+++.|+.+|..++..
T Consensus 155 L~~~~~v~-~~~~~~~~~k~~~F~I~t~~-----~r~~~l~A~s-~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 155 IDGYDVRM-NNTLRKDGKKDCCFEICAPD-----KRIYQFTAAS-PKDAEEWVQQLKFILQD 209 (211)
T ss_dssp CTTCEEEE-CGGGCSSTTGGGEEEEECSS-----SCEEEEECSS-HHHHHHHHHHHHHHHHT
T ss_pred eCCcEEEE-cCCccccCCCCCEEEEEcCC-----CCEEEEEcCC-HHHHHHHHHHHHHHHHH
Confidence 77764332 211 1001234788886532 3589999865 55999999999998864
No 140
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=96.12 E-value=0.019 Score=50.81 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=27.8
Q ss_pred CceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 719 RQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 719 ~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.+.|.|.... ...|.|+|.+ +.|++.|+++|..+..
T Consensus 76 ~~~F~i~~~~-----~r~~~l~a~s-~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 76 DCMLQIVCRD-----GKTISLCAES-TDDCLAWKFTLQDSRT 111 (112)
T ss_dssp GGEEEEEETT-----SCEEEEECSS-HHHHHHHHHHHHHHHT
T ss_pred CcEEEEEecC-----CcEEEEEeCC-HHHHHHHHHHHHHHhh
Confidence 4689887532 4589999865 5599999999998864
No 141
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.11 E-value=0.027 Score=51.68 Aligned_cols=100 Identities=9% Similarity=-0.006 Sum_probs=62.4
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
..+++|-|.+.+ ..+.-+.|++.|=+++|.+-|.... .+....|+|...
T Consensus 7 ~v~k~GwL~K~g--~~k~WkrRWfVLk~~~L~yyk~~~~-----------------------------~~p~G~I~L~~~ 55 (130)
T 1v88_A 7 GIVMADWLKIRG--TLKSWTKLWCVLKPGVLLIYKTQKN-----------------------------GQWVGTVLLNAC 55 (130)
T ss_dssp SCCEEEEEEECC--SSSSCEEEEEEEETTEEEEESCSSS-----------------------------CCCCEEEECSSC
T ss_pred ceEEEeEEEEeC--CCCCceEEEEEEECCEEEEECCCCC-----------------------------CCceEEEEcCCC
Confidence 457788887743 2334689999998888887764432 122345677776
Q ss_pred ceEeeecCCCCcccCceEEEEecCCcc-------c-----------cceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDE-------V-----------IETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~-------~-----------~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
. |.+..+ ....+.|.|....... . ....|.|+|.+ +.|++.||++|..++.
T Consensus 56 ~-v~~~~~---~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s-~~e~~~Wi~ai~~a~~ 124 (130)
T 1v88_A 56 E-IIERPS---KKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATS-ESDGRCWMDALELALK 124 (130)
T ss_dssp E-ECCCCT---TTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSS-HHHHHHHHHHHHHHHT
T ss_pred E-EEECCC---CCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCC-HHHHHHHHHHHHHHHh
Confidence 2 322211 2234788887543210 0 02348899865 5599999999998875
No 142
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=96.10 E-value=0.19 Score=55.58 Aligned_cols=100 Identities=6% Similarity=0.065 Sum_probs=60.8
Q ss_pred CeEEeeeeEEEecc--cccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 624 RSFVLKCDVIELSN--MLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 624 R~li~~g~l~~~~~--~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
....++|-|.+.+. ...+..+.||++|=+..|.+-+..... |. ..++|
T Consensus 299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~------~~------------------------~~~~l 348 (407)
T 4h8s_A 299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVA------GG------------------------LIQDL 348 (407)
T ss_dssp SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSS------CC------------------------CCBCS
T ss_pred CcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCC------CC------------------------eEEEC
Confidence 34568899977542 112235789999988887765422111 10 11334
Q ss_pred cccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 702 TSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 702 ~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
..+ .|... +. .+-+++|.|..... ...|.|+|.+.+ |++.||++|..++...
T Consensus 349 ~~~-~v~~~-~~--~~r~~cF~i~~~~~----~~~~~l~A~s~~-e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 349 DNC-SVMAV-DC--EDRRYCFQITTPNG----KSGIILQAESRK-ENEEWICAINNISRQI 400 (407)
T ss_dssp SCC-EEEEE-CC--TTCSSEEEEECTTS----SCCEEEECSSSH-HHHHHHHHHHHHHSCC
T ss_pred Cce-EEEEC-CC--CCCCceEEEEecCC----CceEEEEcCCHH-HHHHHHHHHHHHHHHh
Confidence 333 22222 22 23457898876432 457999987655 9999999999887644
No 143
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=96.06 E-value=0.029 Score=56.85 Aligned_cols=98 Identities=9% Similarity=0.006 Sum_probs=66.7
Q ss_pred CCeEEeeeeEEEecccc----cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEe
Q psy2293 623 HRSFVLKCDVIELSNML----SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKL 698 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~----~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~ 698 (832)
....+++|-|.+.+... .+..+.|+++|-++.|.+.+.... .+....
T Consensus 55 ~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~-----------------------------~~~~g~ 105 (228)
T 3tfm_A 55 KQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSE-----------------------------EKLKGT 105 (228)
T ss_dssp CCCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTC-----------------------------CSEEEE
T ss_pred CCCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCC-----------------------------cceeEE
Confidence 34456777777765422 133578999999999888764321 233456
Q ss_pred ecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 699 LSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 699 i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
|+|..+..+.+... ..+.|.|... .+.|.|+|.+ +.|++.|+++|..++..
T Consensus 106 I~L~~~~~v~~~~~-----k~~~F~I~t~------~r~~~l~A~s-~~e~~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 106 VEVRSAKEIIDNTN-----KENGIDIIMA------DRTFHLIAES-PEDASQWFSVLSQVHSS 156 (228)
T ss_dssp EEGGGCSEEEEETT-----TTSEEEEECS------SCEEEEECSS-HHHHHHHHHHHHHHHTC
T ss_pred EEcCCCEEeccCCC-----CCcEEEEEcC------CcEEEEEcCC-HHHHHHHHHHHHHHHhc
Confidence 88888755554332 3478988542 4589999865 55999999999999874
No 144
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=96.02 E-value=0.0056 Score=63.81 Aligned_cols=71 Identities=15% Similarity=0.076 Sum_probs=58.5
Q ss_pred cccceEEecCCChhhHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcc----cccccCCCCeEeechhHHHhHhc
Q psy2293 243 FQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTC----MPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 243 F~g~~i~~~g~~~~e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k----~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
+...++|++ +.+.+..+.+.++..||.+. +....+|||||+...++.| ...|.-.+.+||+++||......
T Consensus 113 W~P~Vl~~S--ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 113 WRSMCIQFD--NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp ECCCCEEES--CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTC
T ss_pred EeeeEEEec--CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHh
Confidence 567778884 34457779999999999999 8878889999998766555 77888899999999999997544
No 145
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=96.01 E-value=2.3 Score=46.29 Aligned_cols=100 Identities=9% Similarity=0.046 Sum_probs=62.2
Q ss_pred eEEeeeeEEEeccc--ccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 625 SFVLKCDVIELSNM--LSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 625 ~li~~g~l~~~~~~--~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
..+++|.|.+.+.. ..+..+.||++|=++.|.+-+. ... . ....++|.
T Consensus 277 ~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~-----~------------------------~~~~i~l~ 326 (385)
T 2q13_A 277 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDV-----A------------------------GGLAMDID 326 (385)
T ss_dssp CSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCS-----S------------------------CEEEEECT
T ss_pred CccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCc-----C------------------------CCceEEcc
Confidence 45789999886532 1123789999999998876654 110 0 11345665
Q ss_pred ccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 703 SIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 703 ~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
.. .|....+ .+-++.|.|..... ...|.|+|.+ +.|++.|+++|..++....
T Consensus 327 ~~-~v~~~~~---~~r~~~F~i~t~~~----~~~~~l~A~s-~~e~~~Wi~ai~~~~~~~~ 378 (385)
T 2q13_A 327 NC-SVMAVDC---EDRRYCFQITSFDG----KKSSILQAES-KKDHEEWICTINNISKQIY 378 (385)
T ss_dssp TC-EEEEECC---TTCSSEEEEECTTS----CBCCCEECSS-HHHHHHHHHHHHHHHTTCC
T ss_pred ce-EEEeccc---cCCCceEEEEeCCC----CeEEEEEeCC-HHHHHHHHHHHHHHHHhhc
Confidence 54 2333322 23457898875431 2589999865 5599999999998876543
No 146
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.00 E-value=0.032 Score=50.86 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=59.7
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEe--CCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeec
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLF--TDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLS 700 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF--~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~ 700 (832)
.|...++|-|.+.+....+.-+.|++.|= .+.+++-.+....... . -+....++
T Consensus 12 ~~~~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~----------------------~--~~~~G~I~ 67 (126)
T 1v5p_A 12 DRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAV----------------------G--AGAVGSLQ 67 (126)
T ss_dssp CCCCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCT----------------------T--CCCSEEEE
T ss_pred cCCCceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCC----------------------C--ceeeEEEE
Confidence 45555789998865322344577887774 1555554222100000 0 12334567
Q ss_pred ccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 701 MTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 701 L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
|..+..|...........++.|.| ..+ .+.|.|+|.+ +.|++.|+++|+.++.
T Consensus 68 L~~~~~V~~~~~~~~~~~~~~F~i--~t~----~r~y~l~A~s-~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 68 LTYISKVSIATPKQKPKTPFCFVI--NAL----SQRYFLQAND-QKDLKDWVEALNQASK 120 (126)
T ss_dssp TTTCCEEEECCTTTSCSCSSEEEE--ECS----SCEEEEECSS-HHHHHHHHHHHHHTTT
T ss_pred CCCccEEecCCcccCCCCCEEEEE--ECC----CEEEEEECCC-HHHHHHHHHHHHHHHh
Confidence 777544544331111223467755 232 4689999865 5599999999987653
No 147
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.96 E-value=0.12 Score=47.23 Aligned_cols=103 Identities=9% Similarity=0.081 Sum_probs=58.5
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEe-CCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLF-TDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF-~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
....+++|-|.+.+. ..+..+.|++.|. +..|.+-+..... .....+++
T Consensus 5 ~~~v~~~G~L~K~g~-~~k~WkkRwFVL~~~~~L~Yyk~~~~~-----------------------------~~~g~i~l 54 (130)
T 2d9v_A 5 SSGLVRGGWLWRQSS-ILRRWKRNWFALWLDGTLGYYHDETAQ-----------------------------DEEDRVVI 54 (130)
T ss_dssp CCCEEEEEEEEEECS-SSCCEEEEEEEEETTTEEEEESSSSTT-----------------------------SEEEEEEC
T ss_pred CCceeEEEEEEeecC-ccCCceeeEEEEccCCEEEEEeCCCCC-----------------------------CcCceEec
Confidence 445789999988753 2234688999996 5566665533211 00111111
Q ss_pred cc-cceE------eeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 702 TS-IKKV------YNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 702 ~~-i~~v------~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
.. +..+ .++.........+.|.|.... .+.|.|+|.+ +.|++.|+++|..++..
T Consensus 55 ~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~~~~-----~r~~~l~A~s-~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 55 HFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLRE-----GSRLHLCAET-RDDAIAWKTALMEANST 115 (130)
T ss_dssp TTTEEEEEEGGGCSSCCCCSSCCTTTEEEEEETT-----SCEEEEECSS-HHHHHHHHHHHHHHHTC
T ss_pred ccceeEEeccccccccCCCCCCCcCcEEEEEeCC-----CCEEEEEcCC-HHHHHHHHHHHHHHHcC
Confidence 10 1000 011111002235789987643 2479999865 55999999999988754
No 148
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=95.87 E-value=0.039 Score=49.79 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=61.0
Q ss_pred EEeeeeEEEeccc-----c--cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEe
Q psy2293 626 FVLKCDVIELSNM-----L--SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKL 698 (832)
Q Consensus 626 li~~g~l~~~~~~-----~--~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~ 698 (832)
.+++|.|.+.... . .+.-+.+++.|=++.|.+-|...... + ...++....
T Consensus 8 v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~-----~------------------~~~~~~~~~ 64 (123)
T 1wjm_A 8 EQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAAS-----A------------------GVPYHGEVP 64 (123)
T ss_dssp CCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHT-----T------------------TCBSSSCCC
T ss_pred eEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccc-----c------------------CcccCCCce
Confidence 3567777654321 0 23357899999999998886543210 0 000111122
Q ss_pred ecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 699 LSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 699 i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
++|... .+....+. ..-.+.|.|.... ...|.|+|.+ +.|++.|+++|..++...
T Consensus 65 i~l~~~-~~~~~~~~--~~r~~~F~i~~~~-----~~~~~f~A~s-~~e~~~Wi~ai~~~~~~~ 119 (123)
T 1wjm_A 65 VSLARA-QGSVAFDY--RKRKHVFKLGLQD-----GKEYLFQAKD-EAEMSSWLRVVNAAIASG 119 (123)
T ss_dssp EECTTC-EEEECTTC--SSCSSEEEEECSS-----SCEEEEECSS-HHHHHHHHHHHHHHHHHC
T ss_pred EEccCc-EEeecccc--cCCCCEEEEEEcC-----CcEEEEECCC-HHHHHHHHHHHHHHHhcc
Confidence 444432 12222222 2346888887543 3589999865 559999999999988754
No 149
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=95.84 E-value=0.025 Score=51.78 Aligned_cols=113 Identities=8% Similarity=-0.050 Sum_probs=67.1
Q ss_pred eEEeeeeEEEecc-cccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 625 SFVLKCDVIELSN-MLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 625 ~li~~g~l~~~~~-~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
..+++|-|.+... ...+.-+.|+++|-++.|.+-+...+. .. -.....|+|..
T Consensus 4 ~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~--~~------------------------~~p~g~I~L~~ 57 (134)
T 2y7b_A 4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDE--KR------------------------KNPIGRINLAN 57 (134)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHH--TT------------------------SCCSEEEEGGG
T ss_pred CceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcc--cc------------------------cCceEEEEhhh
Confidence 3467888887622 112335789999999988887643211 00 11123466766
Q ss_pred cce--EeeecCCCCcccCceEEEEecCCcc--------------ccceEEEEEecCChHHHHHHHHHHHHHHHHhhcc
Q psy2293 704 IKK--VYNVEDEAHDNDRQIFALRCRGSDE--------------VIETTYSFNIIDDTLDKMSFLRELCRQASAVYCI 765 (832)
Q Consensus 704 i~~--v~~i~d~~~~~~~~~F~l~~~~~~~--------------~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~~ 765 (832)
+.. |....+.. ....+.|.|....+.. .....|.|+|.+ +.|++.|+++|..++.....+
T Consensus 58 ~~~~~v~~~~~~~-~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s-~~e~~~Wi~al~~~i~~~~~w 133 (134)
T 2y7b_A 58 CTSRQIEPANREF-CARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADT-KEERDLWMQKLNQVLVDIRLW 133 (134)
T ss_dssp BCSSSCEECCTTT-CCCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHSC
T ss_pred Cccccccccchhh-ccCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCC-HHHHHHHHHHHHHHHHHHhcc
Confidence 521 22222110 1245889987631110 112479999865 559999999999999877543
No 150
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=95.74 E-value=0.038 Score=49.26 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=36.1
Q ss_pred EeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 697 KLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 697 ~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
..|||... .|.........+..+.|.|... ...|.|.|.+ +.+.++||++|..+..
T Consensus 51 g~I~L~g~-~V~~~~~~~~~~~~~~Fki~~~------~~~y~f~A~s-~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 51 RTIPLPSC-KLSVPDPEERLDSGHVWKLQWA------KQSWYLSASS-AELQQQWLETLSTAAH 106 (112)
T ss_dssp SEECGGGC-EEECCCSSSCCSSSEEEEEEET------TEEEEEEESS-HHHHHHHHHHHHHHHS
T ss_pred eEEEcCCC-EEEecCcccccCCCCEEEEecC------CeEEEEEcCC-HHHHHHHHHHHHHHhc
Confidence 45788776 3332111100224578888732 4589999866 4599999999988764
No 151
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=95.73 E-value=0.031 Score=61.40 Aligned_cols=103 Identities=7% Similarity=-0.030 Sum_probs=64.1
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccc
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMT 702 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~ 702 (832)
.+.++++|-|.+.+....+..+.|+++|-++.|.+-+..... +....|+|.
T Consensus 266 ~~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~-----------------------------~~~G~I~L~ 316 (386)
T 3lju_X 266 SRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDA-----------------------------FARGEVFIG 316 (386)
T ss_dssp SCCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESSTTCS-----------------------------BCSEEEECC
T ss_pred ccccceeeeEEEECCCCCCCCcccEEEEECCEEEEEecCCCc-----------------------------ccceEEEee
Confidence 356778999988654322446899999999999987643321 112234554
Q ss_pred ccceEeeecCCCCcc---c--CceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 703 SIKKVYNVEDEAHDN---D--RQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 703 ~i~~v~~i~d~~~~~---~--~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
.+..+..+.+..... . .+.|.|... .+.|.|.|.+ +.|++.|+.+|..+++.
T Consensus 317 ~~~~~~~v~~~~~~~~~~~~~~~~F~I~t~------~rty~l~A~s-~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 317 SKESGYTVLHGFPPSTQGHHWPHGITIVTP------DRKFLFACET-ESDQREWVAAFQKAVDR 373 (386)
T ss_dssp CGGGTCEEEESCCTTCCSCCSCEEEEEECS------SCEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred cceeeeeecccCCccccccCCCcEEEEEeC------CeEEEEEcCC-HHHHHHHHHHHHHHHhc
Confidence 432221111111011 1 366777643 3689999865 55999999999999875
No 152
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=95.60 E-value=0.07 Score=55.25 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=66.8
Q ss_pred CeEEeeeeEEE-------ecccc----cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCc
Q psy2293 624 RSFVLKCDVIE-------LSNML----SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKT 692 (832)
Q Consensus 624 R~li~~g~l~~-------~~~~~----~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~ 692 (832)
...+++|.|.. ..+.. .+..+.+++.|=++.|.+-|.+...... ..
T Consensus 9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~-----------------------~~ 65 (263)
T 3a8p_A 9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTE-----------------------QN 65 (263)
T ss_dssp -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC-----------------------------
T ss_pred CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccc-----------------------cc
Confidence 45678888872 12211 2345899999999999888754311000 00
Q ss_pred ceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 693 YKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 693 yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
.+....|+|.+. .+..+.+. ...++.|.|.... ...|.|+|.+ +.|++.|+++|..++....
T Consensus 66 ~~p~g~I~L~~~-~v~~~~~~--~kk~~~F~I~t~~-----~r~y~f~A~s-~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 66 SAPRCALFAEDS-IVQSVPEH--PKKEHVFCLSNSC-----GDVYLFQATS-QTDLENWVTAIHSACASLF 127 (263)
T ss_dssp CCCSEEEECTTC-EEEECTTC--SSCSSEEEEECTT-----SCEEEEECSS-HHHHHHHHHHHHHHHHHHH
T ss_pred cCccceEEcCCc-EEEECCcC--CCCCCEEEEEcCC-----CcEEEEEcCC-HHHHHHHHHHHHHHHHhcc
Confidence 122335677654 33334343 2346889887632 4589999865 5599999999999987664
No 153
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=95.14 E-value=0.15 Score=46.12 Aligned_cols=90 Identities=11% Similarity=0.143 Sum_probs=55.0
Q ss_pred ccEEEEEEeCCeEEEEEecCCCc-ccccCCCCCcccccccccccCCCCCCcc-eeEEeecccccceEeeec-CCCCcccC
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYV-NVLKSPNTSKMSLSTYKTQAKHPIDKTY-KHIKLLSMTSIKKVYNVE-DEAHDNDR 719 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~-~~~k~p~~~~~~~~~~k~~~~~~~~~~y-k~~~~i~L~~i~~v~~i~-d~~~~~~~ 719 (832)
.+.+++.|=.+.|.+-|-..... +....| ..| .....++|... .+.... |. ..-+
T Consensus 31 W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~-------------------~~~~~~~~~i~L~~a-~v~~~~~d~--~krk 88 (124)
T 3pp2_A 31 WSASWTVLEGGVLTFFKDSKTSAAGGLRQP-------------------SKFSTPEYTVELRGA-TLSWAPKDK--SSRK 88 (124)
T ss_dssp CEEEEEEEETTEEEEESCSBCC---CBCCG-------------------GGGCSEEEEEECTTC-EEEECCGGG--CSSS
T ss_pred ceEEEEEEECCEEEEEecCccccccCccCc-------------------ccccCCcceEEcCCC-EEEeccccc--CCCc
Confidence 57899999999999887433210 000000 002 33456777664 222221 32 2346
Q ss_pred ceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 720 QIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 720 ~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
+.|.|.... ...|.|+|.+ +.|.+.|+++|..+|.
T Consensus 89 ~vF~l~t~~-----~~~ylfqA~s-~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 89 NVLELRSRD-----GSEYLIQHDS-EAIISTWHKAIAQGIQ 123 (124)
T ss_dssp SEEEEECTT-----SCEEEEECSC-HHHHHHHHHHHHHHHC
T ss_pred eEEEEECCC-----CCEEEEECCC-HHHHHHHHHHHHHHHh
Confidence 889986432 3579999865 5599999999999874
No 154
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=95.09 E-value=0.059 Score=55.81 Aligned_cols=103 Identities=10% Similarity=0.086 Sum_probs=63.9
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCC-------eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCccee
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTD-------VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKH 695 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D-------~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~ 695 (832)
....+++|-|.+. +..+.|+++|-++ .|.+-|...+.... .-+.
T Consensus 7 ~~~v~k~G~L~K~-----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~------------------------~~~p 57 (264)
T 1qqg_A 7 FSDVRKVGYLRKP-----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHK------------------------SSAP 57 (264)
T ss_dssp --CEEEEEEEECT-----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTT------------------------CSCC
T ss_pred CCCccEEEEEEEC-----CCCEeEEEEEECCCCCCCCCEEEEECCCcccccc------------------------ccCc
Confidence 3456889998763 4578899999998 77777643321000 0122
Q ss_pred EEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 696 IKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 696 ~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
+..|+|.++..|....+ ....+.|.|... .+.|.|.|.+ +.|++.|+++|..++.....
T Consensus 58 ~g~I~L~~~~~V~~~~~---~~~~~~F~I~t~------~rty~l~A~s-e~e~~~Wi~aL~~~~~~~k~ 116 (264)
T 1qqg_A 58 KRSIPLESCFNINKRAD---SKNKHLVALYTR------DEHFAIAADS-EAEQDSWYQALLQLHNRAKG 116 (264)
T ss_dssp SEEEEGGGEEEEEEECC---SSCSSEEEEEES------SCEEEEECSS-HHHHHHHHHHHHHHC-----
T ss_pred ceEEEeeceEEEEeccC---CCCCcEEEEEEC------CEEEEEEeCC-HHHHHHHHHHHHHHHHhccc
Confidence 34577777644433333 234588988754 4589999865 55999999999998876643
No 155
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=95.04 E-value=0.16 Score=54.89 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=66.4
Q ss_pred EEeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccc
Q psy2293 626 FVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIK 705 (832)
Q Consensus 626 li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~ 705 (832)
.+++|.|.+.+.. .+..+.||++|-++.|.+-+..... +....++|..+
T Consensus 213 ~~k~G~L~K~g~~-~k~WkkRwFVL~~~~L~Yyk~~~~~-----------------------------~p~G~I~L~~~- 261 (347)
T 2r09_A 213 PDREGWLLKLGGR-VKTWKRRWFILTDNCLYYFEYTTDK-----------------------------EPRGIIPLENL- 261 (347)
T ss_dssp CCEEEEEEEECSS-SCCEEEEEEEEETTEEEEESSTTCS-----------------------------SCSEEEECTTC-
T ss_pred cccCCeeEecCCC-cccceeEEEEEcCCEEEEEcCCCcc-----------------------------CCcEEEEcCCe-
Confidence 3789999886532 3346889999999888877643211 12235777776
Q ss_pred eEeeecCCCCcccCceEEEEecCCc----------------cccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 706 KVYNVEDEAHDNDRQIFALRCRGSD----------------EVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 706 ~v~~i~d~~~~~~~~~F~l~~~~~~----------------~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
.|..+.+. ...+.|.|...... ....+.|.|+|.+ +.|++.|+++|..++..
T Consensus 262 ~v~~~~~~---~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s-~ee~~~Wi~aI~~ai~~ 329 (347)
T 2r09_A 262 SIREVEDP---RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPS-PEEKEEWMKSIKASISR 329 (347)
T ss_dssp EEEEECCS---SCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSS-HHHHHHHHHHHHHHHHC
T ss_pred EEEEccCC---CCCCEEEEEeCCccccccccccccccccccccCceEEEEECCC-HHHHHHHHHHHHHHHhc
Confidence 34444332 34578888764210 0124689999865 55999999999988764
No 156
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=95.00 E-value=0.09 Score=50.27 Aligned_cols=83 Identities=8% Similarity=0.140 Sum_probs=49.4
Q ss_pred ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceE
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIF 722 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F 722 (832)
.+.||++|-++.|.+-+...... . .....++|.....+.++... .....+.|
T Consensus 29 WkkRwfvL~~~~L~yyk~~~~~~---~------------------------~~~g~i~l~~~~~~~~~~~~-~~~~~~~F 80 (168)
T 2j59_M 29 WKQMYVVLRGHSLYLYKDKREQT---T------------------------PSEEEQPISVNACLIDISYS-ETKRKNVF 80 (168)
T ss_dssp CEEEEEEEETTEEEEESCTTCC-----------------------------------CEECSSCEEEECSS-SCSCSSEE
T ss_pred ceEEEEEEeCCEEEEEECCcccc---c------------------------ccCCceEecccceEEEeccc-cCCCCCEE
Confidence 58899999999888876543210 0 11122344332112233221 02345788
Q ss_pred EEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 723 ALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 723 ~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.|.... ..|.|+|.+ +.|++.|+++|..++.
T Consensus 81 ~I~t~~------r~~~l~A~s-~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 81 RLTTSD------CECLFQAED-RDDMLAWIKTIQESSN 111 (168)
T ss_dssp EEECSS------CEEEEECSS-HHHHHHHHHHHHHHCC
T ss_pred EEEeCC------ceEEEEcCC-HHHHHHHHHHHHHHHh
Confidence 887532 479999865 5599999999998775
No 157
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=94.85 E-value=0.024 Score=56.96 Aligned_cols=87 Identities=10% Similarity=0.028 Sum_probs=65.0
Q ss_pred ccceEEecCCChhhHHHH-HHHHHhCCCEeecCCCC-CCceEEEEeC-CCCcccccccCCCC--eEeechhHHHhHhc--
Q psy2293 244 QGAKVNFFGFSEEDEEQL-QELLLSNGGKPSLSSDE-PLTTHVVVDD-SKVTCMPNVPCTST--YVVKARWFWMSIQN-- 316 (832)
Q Consensus 244 ~g~~i~~~g~~~~e~~~l-~~li~~~GG~~~~~~~~-~~~THlI~~~-~~~~k~~~a~~~~i--~iV~~~Wl~~si~~-- 316 (832)
..++..+||+..++.+.. .+.+...|=.+..+... ..|+|||+.. .+++|+..|.+.+- ++|+++||.+|++.
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih 100 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIH 100 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC
T ss_pred eeEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhh
Confidence 467888999982232222 35566779888844422 4799999988 68899999998866 59999999999998
Q ss_pred -Cc------cccccccccCCC
Q psy2293 317 -SE------CADESKYLFGKN 330 (832)
Q Consensus 317 -g~------~~~E~~Y~~~~~ 330 (832)
|. ..+.++|.+.+.
T Consensus 101 ~~~~~~~~~~l~~~dY~L~d~ 121 (256)
T 3t7k_A 101 SKKDKLSQININLFDYEINGI 121 (256)
T ss_dssp -------CCCCCSSTTBCTTC
T ss_pred cCCcccccccCChhhccCCCc
Confidence 77 778888988664
No 158
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=94.81 E-value=0.12 Score=44.85 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=48.2
Q ss_pred ccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCceE
Q psy2293 643 GDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIF 722 (832)
Q Consensus 643 ~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F 722 (832)
-+.+++.|=++.|.+-+....... .. .+.....++|... .+....+. ....+.|
T Consensus 23 Wk~rwfvL~~~~L~yyk~~~~~~~--~~---------------------~~~~~~~i~l~~~-~~~~~~~~--~~~~~~F 76 (106)
T 1btn_A 23 WHNVYCVINNQEMGFYKDAKSAAS--GI---------------------PYHSEVPVSLKEA-ICEVALDY--KKKKHVF 76 (106)
T ss_dssp CEEEEEEEETTEEEEESSHHHHHH--TC---------------------CSSSCCCEECTTC-EEEECSSC--CSSSSEE
T ss_pred hhEEEEEEECCEEEEEeCCccccc--CC---------------------CCCCcceEECCCC-EEEEcccc--cCCccEE
Confidence 578999999888888764331100 00 0111112344433 11111222 2345789
Q ss_pred EEEecCCccccceEEEEEecCChHHHHHHHHHHHHH
Q psy2293 723 ALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQ 758 (832)
Q Consensus 723 ~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~ 758 (832)
.|.... ...|.|+|.+ +.|++.|+.+|..|
T Consensus 77 ~i~~~~-----~~~~~~~A~s-~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 77 KLRLSD-----GNEYLFQAKD-DEEMNTWIQAISSA 106 (106)
T ss_dssp EEECTT-----SCEEEEECSS-HHHHHHHHHHHHHC
T ss_pred EEEecC-----CCEEEEECCC-HHHHHHHHHHHhcC
Confidence 887432 3589999865 55999999999753
No 159
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=94.79 E-value=0.43 Score=44.36 Aligned_cols=127 Identities=8% Similarity=0.012 Sum_probs=68.0
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcc-------cccCCCC--Ccccccccccc---cCCCCCCcc-
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVN-------VLKSPNT--SKMSLSTYKTQ---AKHPIDKTY- 693 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~-------~~k~p~~--~~~~~~~~k~~---~~~~~~~~y- 693 (832)
+++|.|.... ...+....++++||.+-|.+++....... ....|.. +.++...+... .+.+....+
T Consensus 2 ~k~G~L~~~~-~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~ 80 (150)
T 2fjl_A 2 IKNGILYLED-PVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLD 80 (150)
T ss_dssp CEEEEEEEEE-TTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSC
T ss_pred CcceEEEeec-CCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhccc
Confidence 4678787654 33455789999999999999974432100 0000110 00000000000 000000000
Q ss_pred -------eeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 694 -------KHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 694 -------k~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
-.+..|+|... .|....+. ..+-...|.|..... ....|.|.|.+ +.+...|+++|++++.
T Consensus 81 E~~~lG~l~kG~IdL~gc-~V~~~~~~-~~~~~~vF~I~~~~~---~~~~~~laAds-~Eem~dW~kaIreaa~ 148 (150)
T 2fjl_A 81 ENSPLGDLLRGVLDVPAC-QIAIRPEG-KNNRLFVFSISMPSV---AQWSLDVAADS-QEELQDWVKKIREVAQ 148 (150)
T ss_dssp TTTTTTTCCCEEECSTTC-EEEEETTC-SSSCSCEEEEECTTT---SSCCEEEEESS-HHHHHHHHHHHHHHHT
T ss_pred ccccccccccceEecCcc-EEEeccCC-CCCCceEEEEeCCCC---CCceEEEEeCC-HHHHHHHHHHHHHHHh
Confidence 01467888887 44444332 123456777755422 35678888755 5599999999999875
No 160
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.61 E-value=0.49 Score=42.38 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=64.3
Q ss_pred eEEeeeeEEEecc-cccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 625 SFVLKCDVIELSN-MLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 625 ~li~~g~l~~~~~-~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
..+++|.|..-.. ....|.+.++++|+-+- . .+. . -+-.|....+.... -..+..|.|++
T Consensus 11 ~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S--------~-~Gv----a----RLE~yd~~ek~~r~--~~~rrVIrLsd 71 (127)
T 2d9w_A 11 GAVKQGFLYLQQQQTFGKKWRRFGASLYGGS--------D-CAL----A----RLELQEGPEKPRRC--EAARKVIRLSD 71 (127)
T ss_dssp CSSEEEEEEECBCSSSSCBCCEEEEEEECCS--------S-SSC----C----EEEEECCCSCSSSC--SCCEEEECGGG
T ss_pred ccccceEEEecccchhhhhhheeEEEEecCC--------C-CCc----e----eeeeeeccCccccC--CCCceEEEhhh
Confidence 4578999988664 33445788898887541 0 010 0 01112222221111 12346789999
Q ss_pred cceEeeecCC-CCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 704 IKKVYNVEDE-AHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 704 i~~v~~i~d~-~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
+..|....+. ..+.+.++|.|... +..|.|.|. ++ |+..|+.+|++..
T Consensus 72 CisV~~~~~e~~~pk~~~aF~l~T~------er~~~laAe-~~-E~~~Wi~~ic~~a 120 (127)
T 2d9w_A 72 CLRVAEAGGEASSPRDTSAFFLETK------ERLYLLAAP-AA-ERGDWVQAICLLA 120 (127)
T ss_dssp EEEEEECCSCSSSCSSCEEEEEEES------SCEEEEEEC-HH-HHHHHHHHHHHHH
T ss_pred CCeEecccCccCCCCcceEEEEEeC------CcEEEEEeC-cH-HHHHHHHHHHHHh
Confidence 8667666443 22234567777654 459999986 35 9999999998754
No 161
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=94.16 E-value=0.13 Score=46.27 Aligned_cols=105 Identities=11% Similarity=0.167 Sum_probs=59.9
Q ss_pred EeeeeEEEecc----c---ccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEee
Q psy2293 627 VLKCDVIELSN----M---LSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLL 699 (832)
Q Consensus 627 i~~g~l~~~~~----~---~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i 699 (832)
.++|-|.+... . ..+.-+.+++.|=.+.|.+-|....... .| ...+.....+
T Consensus 9 ~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~---~~------------------~~~~~~~~~i 67 (122)
T 1dro_A 9 GHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKS---NP------------------ELTFRGEPSY 67 (122)
T ss_dssp SEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHH---CT------------------TCCSSCCCBC
T ss_pred EEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCccccc---CC------------------CcccCCCceE
Confidence 36777765432 1 1122478999998888888765432100 00 0011111234
Q ss_pred cccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 700 SMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 700 ~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
+|... .+....+. ..-++.|.|.... ...|.|+|.+.+ |.+.|+++|+.++..
T Consensus 68 ~L~~~-~v~~~~d~--~kr~~~F~l~t~~-----~~~~lfqA~s~~-e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 68 DLQNA-AIEIASDY--TKKKHVLRVKLAN-----GALFLLQAHDDT-EMSQWVTSLKAQSDS 120 (122)
T ss_dssp CCSSC-CCEECCSS--SSSTTEEEEECSS-----SCEEEEECSSSH-HHHHHHHHHHHHHTC
T ss_pred ECCCC-EEEeCCCC--CCCCeEEEEEEcC-----CCEEEEECCCHH-HHHHHHHHHHHHHHh
Confidence 55443 22222222 2345889887432 358999987655 999999999988753
No 162
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=93.53 E-value=0.35 Score=43.24 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=59.1
Q ss_pred eeeeEEEe-cccccC-CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccc
Q psy2293 628 LKCDVIEL-SNMLSH-RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIK 705 (832)
Q Consensus 628 ~~g~l~~~-~~~~~~-k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~ 705 (832)
.+|.|..- .++..+ .-+.+++.|=+..|.+-+..... ....| ...++|+.+.
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~--~~~~p------------------------~~~Idl~~~~ 56 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDK--EQSNP------------------------YMVLDIDKLF 56 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHH--HTTCC------------------------SEEECGGGEE
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCc--ccCCc------------------------eEEEECcccE
Confidence 36766541 112222 35788888888888876543211 00011 1245565554
Q ss_pred eEeeecCC-----CCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 706 KVYNVEDE-----AHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 706 ~v~~i~d~-----~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.|..+.+. ...+..+.|.|.....+......+.|.|.+ +.|+++|+.+|..++.
T Consensus 57 ~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~A~s-~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 57 HVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANS-TEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEECSS-HHHHHHHHHHHHHHCT
T ss_pred EEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEEeCC-HHHHHHHHHHHHHHhc
Confidence 44444332 012235789998754322234678888765 5599999999997763
No 163
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=93.00 E-value=0.23 Score=51.86 Aligned_cols=104 Identities=7% Similarity=-0.020 Sum_probs=60.2
Q ss_pred eeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceE
Q psy2293 628 LKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKV 707 (832)
Q Consensus 628 ~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v 707 (832)
++|.|.+.+.. .+..+.||++|=++.|.+.+..... .|. .......+..+ .+
T Consensus 170 ~~G~L~k~~~~-~k~WkkR~fvL~~~~L~yyk~~~~~-----~~~---------------------~~i~l~~l~~~-~v 221 (291)
T 3tca_A 170 LEGALYLKEDG-KKSWKRRYFLLRASGIYYVPKGKTK-----TSR---------------------DLACFIQFENV-NI 221 (291)
T ss_dssp CEEEEEEECTT-SSCEEEEEEEECSSEEEECCTTCCS-----STT---------------------TCEEEEEGGGC-EE
T ss_pred eEEEEEEeCCC-CCCceEEEEEEeCCEEEEEecCccc-----ccc---------------------CceeeccceeE-EE
Confidence 47888876543 3446899999999988877643321 111 01112223332 11
Q ss_pred eeecCC---CCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 708 YNVEDE---AHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 708 ~~i~d~---~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
....+. ...+..+.|.|............|.|+|.+ +.++..|+.+|+.|..
T Consensus 222 ~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~~l~A~s-~~e~~~Wi~air~Ak~ 276 (291)
T 3tca_A 222 YYGIQCKMKYKAPTDHCFVLKHPQIQKESQYIKYLCCDD-ARTLSQWVMGIRIAKY 276 (291)
T ss_dssp EEECSHHHHHCCSSSCEEEEECTTCCSCCTTSEEEECSS-HHHHHHHHHHHHHHHH
T ss_pred EecCccccccCCCCCeEEEEEcCCCCCCCceEEEEECCC-HHHHHHHHHHHHHHhc
Confidence 111111 002235788887654433445678999865 5599999999987653
No 164
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.17 Score=47.07 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=66.4
Q ss_pred hhhcccccceEEecCCChhh---HHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCC----cccccccCCCCeEeechhH
Q psy2293 238 YKLKLFQGAKVNFFGFSEED---EEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKV----TCMPNVPCTSTYVVKARWF 310 (832)
Q Consensus 238 ~~~~~F~g~~i~~~g~~~~e---~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~----~k~~~a~~~~i~iV~~~Wl 310 (832)
++..-+.|..+|+..+++-. --.+.+.+..-|+........-.+||.||++-.. +.+-.|+..+++||.++|+
T Consensus 157 hkmtdmsgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewv 236 (290)
T 4gns_A 157 HKMTDMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWV 236 (290)
T ss_dssp CCTTCCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHH
T ss_pred cccccccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHH
Confidence 44556789999998876432 2346677888899877555666799999987433 4555677899999999999
Q ss_pred HHhHhcCccccccccccC
Q psy2293 311 WMSIQNSECADESKYLFG 328 (832)
Q Consensus 311 ~~si~~g~~~~E~~Y~~~ 328 (832)
..|--....+.-..|-++
T Consensus 237 racevekrivgvrgfyld 254 (290)
T 4gns_A 237 RACEVEKRIVGVRGFYLD 254 (290)
T ss_dssp HHHHHTTSCCCSGGGBTT
T ss_pred HHHhhhheeeeeeeEEEc
Confidence 999876666665555443
No 165
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=90.03 E-value=2.3 Score=43.47 Aligned_cols=107 Identities=6% Similarity=-0.019 Sum_probs=63.2
Q ss_pred EeeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccce
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKK 706 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~ 706 (832)
-.+|.|...+++ .++.+.||++|=++.|.+.++.... .| -.....++|+++.
T Consensus 133 ~~~G~L~~ke~~-~K~WkkRyfvLr~sgLy~~~k~~sk-----~~---------------------r~l~~~~~L~~~~- 184 (256)
T 3hk0_A 133 EIQGFLHVKELG-KKSWKKLYVCLRRSGLYCSTKGTSA-----AP---------------------RHLQLLADLEDSN- 184 (256)
T ss_dssp EEEEEEEEECTT-SSCEEEEEEEEETTEEEEESSTTCC-----CG---------------------GGEEEEECCTTEE-
T ss_pred cceeEEEEecCC-CCcceEEEEEEeCCEEEEEecCCCC-----cc---------------------ccceEEEEcCCCE-
Confidence 357877765432 3557899999999999887744311 11 0111223566652
Q ss_pred EeeecCCC---CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 707 VYNVEDEA---HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 707 v~~i~d~~---~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
|....+.. ..+....|.|............+.|+|.+ +.++..|+.+|+.+....
T Consensus 185 vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lcaed-e~~~~~W~~aIr~ak~g~ 242 (256)
T 3hk0_A 185 IFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAED-EQTRTSWMTAFRLLKYGM 242 (256)
T ss_dssp EEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEEESS-HHHHHHHHHHHHHHHHTH
T ss_pred EEEecccccccCCCCCCEEEEEcccccCCCceEEEEEeCC-HHHHHHHHHHHHHHHhhH
Confidence 22222110 12234677776543322335678888755 669999999999887644
No 166
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=88.67 E-value=1.3 Score=48.37 Aligned_cols=100 Identities=4% Similarity=-0.039 Sum_probs=62.0
Q ss_pred EeeeeEEEecccccCCccEEEEEE--eCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeeccccc
Q psy2293 627 VLKCDVIELSNMLSHRGDCITLFL--FTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSI 704 (832)
Q Consensus 627 i~~g~l~~~~~~~~~k~~~~~lfL--F~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i 704 (832)
+++|.|.+.+.. .+..+.|+++| =++.|.+-+...+ + +.+..|+|.++
T Consensus 147 ~keG~L~KrG~~-~k~WkrRwFVL~~~~~~L~Yy~~~~~-----~------------------------~p~g~I~L~~~ 196 (386)
T 3lju_X 147 YREGFLWKRGRD-NGQFLSRKFVLTEREGALKYFNRNDA-----K------------------------EPKAVMKIEHL 196 (386)
T ss_dssp EEEEEEEEECSS-SCCEEEEEEEEETTTTEEEEEC----------------------------------CCSEEEEGGGE
T ss_pred ccccceeeeccc-cCCceEEEEEEEcCCCEEEEECCCCc-----c------------------------CcccEEEeecc
Confidence 679999887642 23467889888 4666666654321 1 12235677776
Q ss_pred ceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 705 KKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 705 ~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
..+... +. .+..+.|.|.+... ...+.|.|+|.+ +.++..|+++|+.+....
T Consensus 197 ~~~~~~-~~--~~~~~~f~I~~~~~--~~~R~y~l~A~s-~~e~~~Wi~aIr~a~~~~ 248 (386)
T 3lju_X 197 NATFQP-AK--IGHPHGLQVTYLKD--NSTRNIFIYHED-GKEIVDWFNALRAARFHY 248 (386)
T ss_dssp EEEECH-HH--HTSTTCEEEEEEET--TEEEEEEEECSS-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEcc-cc--cCCCceEEEEEecC--CCceEEEEEcCC-HHHHHHHHHhhhhccccc
Confidence 444421 11 23458888876432 235789999865 459999999999876543
No 167
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=88.58 E-value=0.46 Score=44.07 Aligned_cols=72 Identities=14% Similarity=0.005 Sum_probs=51.0
Q ss_pred ccCCC-ceEEEEcCCCCh--H-----h---H-HHHHHHHHhcCCEEEeecCcceeEEEeccCCCh--------hhHHHhh
Q psy2293 145 CHSMQ-NIVICITGFRNK--Q-----E---T-MKLIDITKHMGGKLRKEMNYQVTHLIANCVSGE--------KYKYAMG 204 (832)
Q Consensus 145 ~~~~~-g~~i~~tg~~~~--~-----~---~-~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~--------Ky~~A~~ 204 (832)
..+|. +.+|+|-+.++. . + + ..+...+..+|+.+.+-|+..|||+|+...-.. -+..|.+
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~ 135 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKK 135 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHH
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHH
Confidence 45787 899999766531 0 1 1 234467789999999999999999999876333 2677778
Q ss_pred cCCCeeeHHHHH
Q psy2293 205 FRVPVLTKEFVL 216 (832)
Q Consensus 205 ~~i~IV~~~Wv~ 216 (832)
.+++|=..+=+.
T Consensus 136 ~~mKVW~yeK~~ 147 (160)
T 3qbz_A 136 NYMKVWSYEKAA 147 (160)
T ss_dssp TTCEEEEHHHHH
T ss_pred cCceecchHHHH
Confidence 888885544333
No 168
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=88.30 E-value=0.87 Score=41.86 Aligned_cols=77 Identities=14% Similarity=0.022 Sum_probs=54.3
Q ss_pred ccCC-CceEEEEc--CCCC-----h---H-hHHHHHHHHHhcCCEEEeecCcceeEEEeccCCCh--------hhHHHhh
Q psy2293 145 CHSM-QNIVICIT--GFRN-----K---Q-ETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGE--------KYKYAMG 204 (832)
Q Consensus 145 ~~~~-~g~~i~~t--g~~~-----~---~-~~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~--------Ky~~A~~ 204 (832)
..+| ++.+|.|- +... + + .++.+...+..+||.+..-|+..|||+|+...-.. -...|.+
T Consensus 18 rkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~ 97 (151)
T 3oq0_A 18 GSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKK 97 (151)
T ss_dssp ---CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHH
T ss_pred HHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHH
Confidence 3478 88999994 4321 0 1 12455678899999999999999999999876332 3367889
Q ss_pred cCCCeeeHHHHHHHHHc
Q psy2293 205 FRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 205 ~~i~IV~~~Wv~dc~~~ 221 (832)
+|++|=+.+=+...+..
T Consensus 98 ~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 98 NYMKVWSYEKAARFLKN 114 (151)
T ss_dssp TTCEEEEHHHHHHHHHT
T ss_pred cCCeeecHHHHHHHHHh
Confidence 99999777767666654
No 169
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=86.05 E-value=1.2 Score=40.10 Aligned_cols=58 Identities=14% Similarity=-0.002 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCEEEeecCcceeEEEeccCCChh--------hHHHhhcCCCeeeHHHHHHHHHc
Q psy2293 164 TMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEK--------YKYAMGFRVPVLTKEFVLSAWEK 221 (832)
Q Consensus 164 ~~~l~~~v~~~GG~~~~~l~~~~THLIa~~~~~~K--------y~~A~~~~i~IV~~~Wv~dc~~~ 221 (832)
++.+...+..+||.+..-|+..|||+|+...-... ...|.++|++|=+.+=+...+..
T Consensus 32 ~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 32 RDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHHh
Confidence 46777889999999999999999999998763322 47788999999777766666554
No 170
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=85.62 E-value=4.2 Score=42.00 Aligned_cols=105 Identities=9% Similarity=-0.003 Sum_probs=58.7
Q ss_pred eeeeEEEecccccCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceE
Q psy2293 628 LKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKV 707 (832)
Q Consensus 628 ~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v 707 (832)
.+|.|...+.+ .++.+.||++|=.+.|.+.++.+. +.|.. ....++|+++ .|
T Consensus 160 ~~G~L~~k~~~-~k~WkkRyfvLr~sgLyy~~K~~s-----k~~r~---------------------l~~l~~L~~~-~V 211 (281)
T 4gmv_A 160 IEGVLWLKDDG-KKSWKKRYFLLRASGIYYVPKGKA-----KVSRD---------------------LVCFLQLDHV-NV 211 (281)
T ss_dssp CEEEEEEECTT-SSCEEEEEEEECSSCEEEC--------------C---------------------CEEEECGGGC-EE
T ss_pred cEEEEEEECCC-CCCCeEEEEEEeCCEEEEEeCCCC-----Ccccc---------------------ceEEEEcCCc-EE
Confidence 47777665432 355789999999999988775432 11110 0112345554 22
Q ss_pred eeecCC---CCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 708 YNVEDE---AHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 708 ~~i~d~---~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
....+. ...+-..+|.|............+.|+|.+ +.++..|+.+|+-+...
T Consensus 212 Y~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~caed-e~~~~~Wv~Air~ak~g 267 (281)
T 4gmv_A 212 YYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDD-VRTLHQWVNGIRIAKYG 267 (281)
T ss_dssp EEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEEECSS-HHHHHHHHHHHHHHHHT
T ss_pred EEecccccccCCCCCcEEEEecCccCCCCCceEEEEeCC-HHHHHHHHHHHHHHhhC
Confidence 222210 112335677776543222235678888755 66999999999987753
No 171
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.48 E-value=1.6 Score=39.77 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=33.2
Q ss_pred eecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 698 LLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 698 ~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.|.|..+.+..+. + ..++.|.|.+..+.......|.|.|.+ +.+...||.+++.|..
T Consensus 56 ~I~L~gceV~pd~--~---~~~~kf~ikl~iPs~~g~r~y~l~cds-Eeqy~~WMaA~rlAsk 112 (137)
T 2ys3_A 56 QLNLKGCEVVPDV--N---VSGQKFCIKLLVPSPEGMSEIYLRCQD-EQQYARWMAGCRLASK 112 (137)
T ss_dssp CBCTTTCEEEECC--B---GGGTBEEEEEEEECSSSEEEEEEEESS-HHHHHHHHHHHHHHHT
T ss_pred EEECCCCEEeccc--c---ccCCceEEEEEccCCCCceEEEEECCC-HHHHHHHHHHHHHhcc
Confidence 3566666332231 1 123555544433322245788888854 6699999999986653
No 172
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=83.58 E-value=28 Score=32.20 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=63.0
Q ss_pred CCCeEEeeeeEEEecccccCCccEEEEEEeCCeEEEE-EecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeec
Q psy2293 622 SHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVC-KKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLS 700 (832)
Q Consensus 622 ~~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D~Lli~-k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~ 700 (832)
++...++.|.|.+..+ -..+.|+++|-+--.++. .+.. ...+..||
T Consensus 48 ~ge~Ilk~G~v~KrkG---l~~kkR~liLT~~PrL~Yvdp~~------------------------------~~~KGeIp 94 (151)
T 1w1g_A 48 ENNLILKMGPVDKRKG---LFARRRQLLLTEGPHLYYVDPVN------------------------------KVLKGEIP 94 (151)
T ss_dssp TTCCEEEEEEEEEEET---TEEEEEEEEEETTTEEEEEETTT------------------------------TEEEEEEC
T ss_pred CCCcEEEEEEEEeccc---CcceeEEEEEcCCceEEEEcCcc------------------------------ccccceEe
Confidence 6778899999987542 124677888876644443 3322 34556788
Q ss_pred ccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 701 MTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 701 L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
++.-..|.-. .. +.|.|... ++.|.|.++ ....+.|+++|..++..+..
T Consensus 95 ls~~l~ve~k-~~------~~F~I~Tp------~RtY~~~d~--~~~AqeWv~aI~~~~~~~~~ 143 (151)
T 1w1g_A 95 WSQELRPEAK-NF------KTFFVHTP------NRTYYLMDP--SGNAHKWCRKIQEVWRQRYQ 143 (151)
T ss_dssp CCTTCEEEES-SS------SEEEEEET------TEEEEEECT--TSCHHHHHHHHHHHHHHHHC
T ss_pred cCCCeeEEEc-CC------CEEEEECC------CceEEEEcC--ccCHHHHHHHHHHHHHHHhc
Confidence 8764333332 22 57888654 369999975 44899999999999877653
No 173
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=83.54 E-value=1.6 Score=40.42 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=40.5
Q ss_pred cccc-cceEEecCCChh------------hHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCc
Q psy2293 241 KLFQ-GAKVNFFGFSEE------------DEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVT 292 (832)
Q Consensus 241 ~~F~-g~~i~~~g~~~~------------e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~ 292 (832)
+.|. +++|||-+.+.+ .+..|.+-+...|+.+. ..++..+||||+..+-..
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~-~FFd~~VTiVIT~R~i~~ 120 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQIT-QFFDTTVTIVITRRSVEN 120 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEE-SSCCTTCCEEEESSCSSC
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEee-eeccCCeEEEEecCcCcc
Confidence 5687 899999887653 11446678889999999 999999999999886553
No 174
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=80.70 E-value=2.2 Score=38.71 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=40.0
Q ss_pred eecccccceEeeecCCC-------CcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 698 LLSMTSIKKVYNVEDEA-------HDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 698 ~i~L~~i~~v~~i~d~~-------~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
.+++++|+.|..-.++. ......+|.|.+.+. ...+.|.|.+ +.+.+.|+..|...+....
T Consensus 57 ~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~----~k~LdlvA~s-~~e~~~Wv~gL~~L~~~~~ 124 (131)
T 1mai_A 57 LFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQ----RNTLDLIAPS-PADAQHWVQGLRKIIHHSG 124 (131)
T ss_dssp EEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSS----CCCEEEECSS-HHHHHHHHHHHHHHHC---
T ss_pred EEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCC----CceEEEEeCC-HHHHHHHHHHHHHHHHhhh
Confidence 46778876655554220 012457899988753 3577778765 5599999999998876553
No 175
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=75.73 E-value=3.1 Score=42.99 Aligned_cols=90 Identities=8% Similarity=0.000 Sum_probs=54.0
Q ss_pred CccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCce
Q psy2293 642 RGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQI 721 (832)
Q Consensus 642 k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~ 721 (832)
..+.+|+.|=.+.|.+-|......... .......++|... .+....+. ..-++.
T Consensus 38 ~Wkk~w~VLkg~~L~fYKde~~~~~~~-----------------------~~~p~~~I~L~ga-~v~~a~d~--~kKk~v 91 (279)
T 3a8n_A 38 KWKHYWVSLKGCTLFFYETDGRSGIDH-----------------------NSVPKHAVWVENS-IVQAVPEH--PKKDFV 91 (279)
T ss_dssp CCEEEEEEEETTEECCBCCC-------------------------------CCCSSCCBCCSC-EECCCTTS--SSSCSC
T ss_pred CCeEEEEEEeCCEEEEEeccccccccc-----------------------ccCCCceEeccCc-EEEecccc--CCCCcE
Confidence 357899999999988876543210000 0111123555554 22212232 234589
Q ss_pred EEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 722 FALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 722 F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
|.|.... ...|.|+|.+ +.|.+.|+++|..+++...
T Consensus 92 F~L~t~~-----g~~yLFQA~s-~eEm~~WI~aI~~a~~~~~ 127 (279)
T 3a8n_A 92 FCLSNSL-----GDAFLFQTTS-QTELENWITAIHSACAAAV 127 (279)
T ss_dssp CCEEETT-----TEEEECCCSC-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCC-----CCEEEEeCCC-HHHHHHHHHHHHHHHhhhc
Confidence 9997643 4579999865 5599999999999887543
No 176
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=73.88 E-value=3 Score=37.61 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcc--------cccccCCCCeEeechhHHHhHhc
Q psy2293 257 DEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTC--------MPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 257 e~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k--------~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
.++.|++-+...||+++ +.++..+||||+..+.... +..|.+.++.|=+.+=+.-=+++
T Consensus 31 ~~~llk~~f~~LGa~I~-~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 31 RRDLLKRGFLTLGAQIT-QFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHHHTTCEEE-SSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEe-eecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHHh
Confidence 45678889999999999 9999999999998854432 33456678888776666554444
No 177
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=73.10 E-value=87 Score=32.08 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=45.2
Q ss_pred CcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhhc
Q psy2293 691 KTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYC 764 (832)
Q Consensus 691 ~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~~ 764 (832)
..|+.....+|.+++.|...-. ....|.|.+. ..|..+|.+ ..||+.||..|.+....+..
T Consensus 162 gsFsIGKTW~L~ELk~Id~~~~-----~~~gF~LTl~-------K~YyW~A~s-~kER~~FI~sLvKiy~KYtg 222 (320)
T 3a58_A 162 GSFQIGRTWQLTELVRVEKDLE-----ISEGFILTMS-------KKYYWETNS-AKERTVFIKSLITLYIQTFE 222 (320)
T ss_dssp GCEEEEEEEEGGGCCEEEECSS-----CTTEEEEESS-------SEEEEEESS-HHHHHHHHHHHHHHHHHHTT
T ss_pred CceEecceechhhhhhhhcccC-----CCCceEEEeC-------CceEEecCC-HHHHHHHHHHHHHHHHHHcC
Confidence 3488899999999965553111 1267999873 478888755 55999999999999887763
No 178
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=72.94 E-value=8.9 Score=42.24 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=56.4
Q ss_pred eEEeeeeEEEecccccCCccEEEEEEe-CCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccc
Q psy2293 625 SFVLKCDVIELSNMLSHRGDCITLFLF-TDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTS 703 (832)
Q Consensus 625 ~li~~g~l~~~~~~~~~k~~~~~lfLF-~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~ 703 (832)
..+++|.|.+.+. ..+..+.||+.|- +..|++-|.+.... ....+||..
T Consensus 5 ~v~keG~L~K~g~-~~k~Wk~r~fvL~~~~~l~yyk~~~~~~-----------------------------~~~~i~l~~ 54 (446)
T 4ejn_A 5 AIVKEGWLHKRGE-YIKTWRPRYFLLKNDGTFIGYKERPQDV-----------------------------DQREAPLNN 54 (446)
T ss_dssp CEEEEEEEEEEET-TTTEEEEEEEEEETTSBEEEESSCC------------------------------------CCCGG
T ss_pred eEEEEeeEEeecc-ccccccceEEEEeeCCEEEEEecCCCCC-----------------------------ccCcccccC
Confidence 5789999988753 2334688899887 56777665433210 011233433
Q ss_pred cce--EeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHh
Q psy2293 704 IKK--VYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAV 762 (832)
Q Consensus 704 i~~--v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~ 762 (832)
+.. ....... ....+.|.|...... ......|.+.+ +.+++.|+.+|+.++...
T Consensus 55 ~~~~~~~~~~~~--~~~~~~f~I~~~~~~--~~~~r~~~~~~-~ee~e~W~~ai~~~i~~~ 110 (446)
T 4ejn_A 55 FSVAQCQLMKTE--RPRPNTFIIRCLQWT--TVIERTFHVET-PEEREEWTTAIQTVADGL 110 (446)
T ss_dssp GBCTTCEEEEEC--SSSTTEEEEEEEETT--EEEEEEEECSS-HHHHHHHHHHHHHHCCC-
T ss_pred ccccceeecCCC--CCCCceeEEEcCCCc--eeeeeEEecCC-HHHHHHHHHHHHhhhhhh
Confidence 210 0011111 122478888765431 12233677654 559999999999987543
No 179
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=71.50 E-value=29 Score=32.69 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=46.0
Q ss_pred CcceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 691 KTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 691 ~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
..|+.....+|.+++.|...... ...|.|.+. ..|-.+|.+ ..||+.|+..|.+....+.
T Consensus 92 gsfsiGkTW~L~ELk~Ie~~~~~-----~~gF~ltl~-------K~Y~W~a~s-~~Er~~FI~sL~K~y~ky~ 151 (171)
T 3hie_A 92 GSFQIGRTWQLTELVRVEKDLEI-----SEGFILTMS-------KKYYWETNS-AKERTVFIKSLITLYIQTF 151 (171)
T ss_dssp SCEEEEEEEEGGGCCEEEECSSC-----TTEEEEESS-------SEEEEECSS-HHHHHHHHHHHHHHHHHTS
T ss_pred CcEEeeeeeecccceeeeccCCC-----CCcEEEEeC-------CeEEEecCC-HHHHHHHHHHHHHHHHHHc
Confidence 34899999999999665553322 378999873 479999755 5599999999999888776
No 180
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=67.29 E-value=20 Score=33.64 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=51.1
Q ss_pred cCCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccC
Q psy2293 640 SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDR 719 (832)
Q Consensus 640 ~~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~ 719 (832)
.-|+-.++-|.|.|..|..-+.+... ...| ...|.|..+.++.++.-. +
T Consensus 62 tLKgyKryWFv~kd~~LsyYKskEe~--~geP------------------------~~~I~LrGCEVtpDVnva-----~ 110 (173)
T 4f7h_A 62 TLKGYKQYWCTFKDTSISCYKSKEES--SGTP------------------------AHQMNLRGCEVTPDVNIS-----G 110 (173)
T ss_dssp BCCCCEEEEEEEETTEEEEESCGGGC--SSCC------------------------SEEEECTTCEEEEEEETT-----T
T ss_pred ccccceeEEEEEeCCEEEEEcCHhHh--cCCC------------------------ceEEecCceEEecccccc-----c
Confidence 34566778999988776664433210 0111 234667777555554333 2
Q ss_pred ceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHH
Q psy2293 720 QIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQA 759 (832)
Q Consensus 720 ~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i 759 (832)
..|.|.+..+.......+-+.|. +|....+||.+++-+.
T Consensus 111 ~Kf~IkL~vP~~~gm~e~~Lrcd-~E~qya~WMAAcrLAs 149 (173)
T 4f7h_A 111 QKFNIKLLIPVAEGMNEIWLRCD-NEKQYAHWMAACRLAS 149 (173)
T ss_dssp TEEEEEEEEEETTEEEEEEEEES-SHHHHHHHHHHHHHHH
T ss_pred cceeEEEeccCCCCcceeeeecC-CHHHHHHHHHHhhhhc
Confidence 44544443333334566777774 5669999999886554
No 181
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=64.07 E-value=5.6 Score=36.58 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCEeecCCCCCCceEEEEeCCCCcc--------cccccCCCCeEeechhHHHhHhc
Q psy2293 258 EEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTC--------MPNVPCTSTYVVKARWFWMSIQN 316 (832)
Q Consensus 258 ~~~l~~li~~~GG~~~~~~~~~~~THlI~~~~~~~k--------~~~a~~~~i~iV~~~Wl~~si~~ 316 (832)
++.|++.+...||+++ +.++..+||||+..+.... +..|.+.++.|=+.+=+.-=+++
T Consensus 49 ~~llkk~f~~LGa~I~-~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 49 RDLLKRGFLTLGAQIT-QFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp HHHHHHHHHHHTCEEE-SSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEe-eecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeecHHHHHHHHHh
Confidence 4567788899999999 9999999999998754432 23456678888776666655554
No 182
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=59.25 E-value=11 Score=33.88 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=28.4
Q ss_pred cCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHH
Q psy2293 718 DRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASA 761 (832)
Q Consensus 718 ~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~ 761 (832)
..|.|.|..... ..|+|.+.+ +.+++.|+.+|+.++..
T Consensus 94 ~~nTFVlK~~n~-----~eyi~ea~d-~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 94 KDNTFVLKVENG-----AEYILETID-SLQKHSWVADIQGCVDS 131 (136)
T ss_dssp CTTEECCBCTTS-----CBEEEECSS-HHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCC-----cEEEEEcCC-HHHHHHHHHHHHhhcCC
Confidence 357887765433 369999865 55999999999888764
No 183
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=56.04 E-value=23 Score=29.70 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q psy2293 414 SNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKY 470 (832)
Q Consensus 414 ~~Yv~~L~~l~~~f~~~L~~~~~~~~~~l~~~~~~~IF~ni~~I~~~h~~fl~~L~~ 470 (832)
..|++.|+.=+++|...+......+.++-...-++.+|-+|..+ |..++.-++.
T Consensus 3 ~ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~M---H~~Ll~~i~~ 56 (98)
T 3f1i_H 3 EQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGM---HPQLLELLNQ 56 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 36889999999999999998877788888888999999887765 5555544433
No 184
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=55.76 E-value=42 Score=31.15 Aligned_cols=88 Identities=11% Similarity=0.008 Sum_probs=47.8
Q ss_pred CCccEEEEEEeCCeEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecccccceEeeecCCCCcccCc
Q psy2293 641 HRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQ 720 (832)
Q Consensus 641 ~k~~~~~lfLF~D~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L~~i~~v~~i~d~~~~~~~~ 720 (832)
-|+-.++-|.|.|.-|..-+.+... .. .....|.|....++-|+.-. ..+.
T Consensus 42 LKgfKryWfv~kDt~LsyYKSkEe~--~g------------------------eP~~~inLrGCEVtPDVnva---~~Kf 92 (165)
T 4bbk_A 42 LKACKQYWFVFKDTSIAYFKNKELE--QG------------------------EPIEKLNLRGCEIVPDVNVS---GRKF 92 (165)
T ss_dssp --CCEEEEEEEETTEEEEESSGGGT--TS------------------------CCSEEEECTTCEEEEEEETT---TTEE
T ss_pred cccceeEEEEEeCCEEEEEcCHHHh--cC------------------------CCceEEecCccEEecccccc---ccee
Confidence 3456679999999876664332210 01 11234566776444444322 1223
Q ss_pred eEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 721 IFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 721 ~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.|.|.+... .....+-|.| ++|.+..+||.+++-+..
T Consensus 93 ~ikL~ip~~--~gm~e~~Lrc-dsE~QYa~WMAAcrLAsk 129 (165)
T 4bbk_A 93 GIKLLIPVA--DGMNEVYLRC-DHEDQYARWMAACILASK 129 (165)
T ss_dssp EEEEEEEET--TEEEEEEEEE-SSHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCC--Ccceeeeeec-CCHHHHHHHHHHhhhccc
Confidence 455544432 2344566676 457799999988865543
No 185
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=45.28 E-value=6.7 Score=37.95 Aligned_cols=127 Identities=11% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCCCCCceeEEEeeccc--CcHHHHHHHhhCCCceEeecC-------------CceEEecCCCCCcccccccccccchhh
Q psy2293 44 DTEPGMPCQICVCSNVD--QTETFKKALASFNVPVVLVED-------------PDYFVHAKFDGPIIIVTSEFTNNFLRF 108 (832)
Q Consensus 44 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~f~g~~i~~~~~~~~~f~~~ 108 (832)
..+|.-.-|||+|+++. ..-+.-..|.+.|..|.-... +.+| +| |+. -.+-|+.|
T Consensus 19 ~~mp~~~Lr~avVCaSN~NRSMEAH~~L~k~Gf~V~SfGTGs~VkLPGps~d~PnvY---~F-gT~------Y~~iy~dL 88 (214)
T 4h3k_B 19 SHMPSSPLRVAVVSSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVY---DF-KTT------YDQMYNDL 88 (214)
T ss_dssp -------CEEEEEESSSSSHHHHHHHHHHHTTCEEEEEECSSSEEECCSSTTCCEEE---CT-TSC------HHHHHHHH
T ss_pred CCCCCCCCeEEEECCCCcchhHHHHHHHHHCCCceEeecCCCccCCCCCCCCCCCcc---CC-CCC------HHHHHHHH
Confidence 35666677999999766 466778889999987776422 2244 45 333 01116666
Q ss_pred hCCCCCeEeCHHHHHHHHHhccccccCC-CCCCCCccccCCCceEEEEcCCCChHhH--HHHHHHHHhcCCEEEeecCcc
Q psy2293 109 HKPPQSRILGPTALIEMSIKVENLSIPL-RTRIRPLFCHSMQNIVICITGFRNKQET--MKLIDITKHMGGKLRKEMNYQ 185 (832)
Q Consensus 109 ~~~~~~~i~gp~~v~~~~~~~~~~~~~l-p~~~~P~~~~~~~g~~i~~tg~~~~~~~--~~l~~~v~~~GG~~~~~l~~~ 185 (832)
.+. +-..+.-.=|+..+.+++ .+ +.+.|-.=+.-..+|+|||- || ..+.+-...-|+ -+.+
T Consensus 89 ~~k-d~~lY~~NGlL~MLdRN~----~iK~~PER~Q~~~~~fDvViTcE------ERvfD~Vvedl~~R~~-----~~~~ 152 (214)
T 4h3k_B 89 LRK-DKELYTQNGILHMLDRNK----RIKPRPERFQNCKDLFDLILTCE------ERVYDQVVEDLNSREQ-----ETCQ 152 (214)
T ss_dssp HHH-HHHHHHHTSHHHHHHHHH----TTCSSCCBGGGCCCCCSEEEESS------HHHHHHHHHHHHHSCC-----SSCC
T ss_pred HhH-CHHHHHHcCcHHHHhCCc----cccCCChhhhccCCCccEEEEcc------chhHHHHHHHHHhcCC-----CCCc
Confidence 666 666677777888999888 55 33333222334468999872 22 233332333343 2446
Q ss_pred eeEEEeccCCC
Q psy2293 186 VTHLIANCVSG 196 (832)
Q Consensus 186 ~THLIa~~~~~ 196 (832)
.-|+|--+...
T Consensus 153 pvHVINvdIkD 163 (214)
T 4h3k_B 153 PVHVVNVDIQD 163 (214)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEecccC
Confidence 77898877743
No 186
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=44.99 E-value=60 Score=30.80 Aligned_cols=62 Identities=10% Similarity=0.101 Sum_probs=44.1
Q ss_pred cceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 692 TYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 692 ~yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
.++....|||.=..+...+..+ +.-.+.|+|.-... ....+|+|.++. +-+.|+++|...|.
T Consensus 116 ~~~D~~~IPLkMayvtR~~~~t--D~e~r~fEv~s~DG----~~t~iLrc~D~a-~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 116 NLSEAKHVSLKMAYVSRRCTPT--DPEPRYLEICAADG----QDAVFLRAKDEA-SARSWAGAIQAQIG 177 (178)
T ss_dssp SSCSCEEEETTTCEEEEECCSS--CCSSCEEEEEETTT----TEEEEECCSSHH-HHHHHHHHHHHHHT
T ss_pred ccCcceeecHHHHHHHHhccCC--CCCccEEEEEcCCC----CeeEEEEeCCHH-HHHHHHHHHHHhcc
Confidence 3445566777665556666555 34579999976654 568889987655 99999999987763
No 187
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=43.15 E-value=1e+02 Score=27.99 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=48.7
Q ss_pred EEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHHHhh
Q psy2293 696 IKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVY 763 (832)
Q Consensus 696 ~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~~~~ 763 (832)
...+|++.|....-+.+. ..+.+.+.|++..+...+...+.|+|.. ..-+.--++|..|+++++
T Consensus 71 lE~fpl~~I~~~~av~~~--~~y~siLllv~q~~~~~~~~iH~FQc~e--v~A~~v~~di~~al~~~~ 134 (140)
T 2cy5_A 71 LESYPLDAIVRCDAVMPR--GRSRSLLLLVCQEPERAQPDVHFFQGLL--LGAELIREDIQGALQNYR 134 (140)
T ss_dssp EEEEEGGGEEEEEEECCS--SCSSCEEEEEECCTTCSSCEEEEEEECT--THHHHHHHHHHHHHHHHC
T ss_pred hhcCChhhceeccccCCc--cccCcEEEEEEecCCCCCccEEEEEecc--ccHHHHHHHHHHHHHHhh
Confidence 456889988777666666 6678899999998888889999999843 245555678888887764
No 188
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=42.71 E-value=7.4 Score=37.26 Aligned_cols=123 Identities=11% Similarity=0.119 Sum_probs=72.9
Q ss_pred CCceeEEEeeccc--CcHHHHHHHhhCCCceEeecC-------------CceEEecCCCCCcccccccccccchhhhCCC
Q psy2293 48 GMPCQICVCSNVD--QTETFKKALASFNVPVVLVED-------------PDYFVHAKFDGPIIIVTSEFTNNFLRFHKPP 112 (832)
Q Consensus 48 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~ 112 (832)
...-|||+|+++. ...+.-..|.+.|..|.-... +.+|-+.--+.+. |+.|.+.
T Consensus 7 ~~~l~~avVCaSN~NRSMEaH~~L~k~G~~V~SfGTGs~VrLPGps~d~PNvY~FgT~Y~~i----------y~dL~~k- 75 (198)
T 3p9y_A 7 PSKLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDI----------YRDLESK- 75 (198)
T ss_dssp TTCCEEEEEESSSSSHHHHHHHHHHHTTCEEEEEECSSSEEECCSSTTCCEEECTTCCHHHH----------HHHHHHH-
T ss_pred CCCceEEEEcCCCCcccHHHHHHHHhCCCceeecCCCceeEcCCCCCCCCCccCCCCcHHHH----------HHHHHHh-
Confidence 4556999999776 455678889999987765322 2344332211222 6667766
Q ss_pred CCeEeCHHHHHHHHHhccccccCC-CCCCCCccccCCCceEEEEcCCCChHhH--HHHHHHHHhcCCEEEeecCcceeEE
Q psy2293 113 QSRILGPTALIEMSIKVENLSIPL-RTRIRPLFCHSMQNIVICITGFRNKQET--MKLIDITKHMGGKLRKEMNYQVTHL 189 (832)
Q Consensus 113 ~~~i~gp~~v~~~~~~~~~~~~~l-p~~~~P~~~~~~~g~~i~~tg~~~~~~~--~~l~~~v~~~GG~~~~~l~~~~THL 189 (832)
+...+.-.=|+..+.+++ .+ |.+.|-.=+.-..+++|||- || ..+.+-...-|+ -+.+.-|+
T Consensus 76 d~~lY~~NGiL~MLdRNr----~iK~~PERfQ~~~~~fDvIiTcE------ERvfD~VvedL~~R~~-----~~~~pVHV 140 (198)
T 3p9y_A 76 DKEFYTQNGLLHMLDRNR----RIKKCPERFQDTKEQFDIIVTVE------ERVYDLVVMHMESMES-----VDNRPVHV 140 (198)
T ss_dssp HHHHHHHTSHHHHHHHHH----HHCSSCCBGGGCCCCCSEEEESS------HHHHHHHHHHHHTSCC-----SSCCEEEE
T ss_pred hHHHHHHcCcHHHHhcCc----cccCCccchhccCCCcCEEEEee------chhHHHHHHHHHhccc-----CcCceEEE
Confidence 666676777888888887 44 33333222333469999882 22 233333333333 23455699
Q ss_pred EeccCCC
Q psy2293 190 IANCVSG 196 (832)
Q Consensus 190 Ia~~~~~ 196 (832)
|--+...
T Consensus 141 iNvDIkD 147 (198)
T 3p9y_A 141 LNVDVVN 147 (198)
T ss_dssp EECCCCS
T ss_pred EEeeccC
Confidence 9877743
No 189
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=36.18 E-value=90 Score=31.66 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=39.8
Q ss_pred ceeEEeecccccceEeeecCCCCcccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHHHHH
Q psy2293 693 YKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCRQAS 760 (832)
Q Consensus 693 yk~~~~i~L~~i~~v~~i~d~~~~~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~~i~ 760 (832)
+.....+||.-......+..+ +.-.+.|.|.-... .....|+|.+++ +-.+|+++|..+|.
T Consensus 202 ~~d~~~ipL~m~~~tR~~~~~--d~~~~~fev~s~dG----~~t~~l~~~d~~-~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 202 LSEAKHVSLKMAYVSRRCTPT--DPEPRYLEICAADG----QDAVFLRAKDEA-SARSWAGAIQAQIG 262 (263)
T ss_dssp CSSCEEEESSSEEEEEECCSS--CSSSCEEEEEETTT----TEEEEEECSSHH-HHHHHHHHHHHHHC
T ss_pred cccccccCcceeeeeeecccc--CCCCceEEEECCCC----CeeEEEEECCHH-HHHHHHHHHHHHhc
Confidence 344445666555444444443 33467888866433 567888986654 99999999998764
No 190
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=33.89 E-value=2.5e+02 Score=24.87 Aligned_cols=100 Identities=10% Similarity=0.123 Sum_probs=55.8
Q ss_pred CCeEEeeeeEEEecccccCCccEEEEEEeCC-eEEEEEecCCCcccccCCCCCcccccccccccCCCCCCcceeEEeecc
Q psy2293 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTD-VVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSM 701 (832)
Q Consensus 623 ~R~li~~g~l~~~~~~~~~k~~~~~lfLF~D-~Lli~k~k~~~~~~~k~p~~~~~~~~~~k~~~~~~~~~~yk~~~~i~L 701 (832)
+...|++|-++..... .+...||.|-++. .|-+-+-.. ..+.|+ .|||
T Consensus 5 ~s~vlkeGW~VH~t~~--d~~rKRHYWrLD~K~Itlf~~e~--------------------------~~~~yk---eIpL 53 (125)
T 2coa_A 5 SSGTLREGWVVHYSNK--DTLRKRHYWRLDCKCITLFQNNT--------------------------TNRYYK---EIPL 53 (125)
T ss_dssp CCSCSEEEEEEECCSS--SCCCEEEEEEECSSEEEEESSSS--------------------------CSSCSE---EEET
T ss_pred CCceeecceEEEEccC--CccccceeeEecCCeEEEEecCC--------------------------CCceee---eeeh
Confidence 4456889988886542 2233456555554 332222110 022355 4899
Q ss_pred cccceEeeecCCCC---cccCceEEEEecCCccccceEEEEEec----C------ChHHHHHHHHHHHHHH
Q psy2293 702 TSIKKVYNVEDEAH---DNDRQIFALRCRGSDEVIETTYSFNII----D------DTLDKMSFLRELCRQA 759 (832)
Q Consensus 702 ~~i~~v~~i~d~~~---~~~~~~F~l~~~~~~~~~~~~~~l~a~----s------se~eK~~Wl~~L~~~i 759 (832)
++|..|....+..- ....+.|+|.... ..|...+. . .....+.|..+|++|+
T Consensus 54 ~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~------~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL 118 (125)
T 2coa_A 54 SEILTVESAQNFSLVPPGTNPHCFEIVTAN------ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL 118 (125)
T ss_dssp TTCCEEEESCCCSSSCTTSCCEEEEEECSS------CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred hHeecccccccccccCCCCCCceEEEEeCC------eEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence 99977777654421 1134889986532 35555431 0 0136888999998875
No 191
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=33.55 E-value=43 Score=21.08 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2293 455 CPIFDTHKDLLKDLKYLE 472 (832)
Q Consensus 455 ~~I~~~h~~fl~~L~~~~ 472 (832)
-+|..+|+.||..+++..
T Consensus 4 geiwklheeflkkfeell 21 (32)
T 1m3w_A 4 GEIWKLHEEFLKKFEELL 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 468888999988887754
No 192
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=26.27 E-value=54 Score=32.37 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=26.2
Q ss_pred ccCceEEEEecCCccccceEEEEEecCChHHHHHHHHHHHH
Q psy2293 717 NDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLRELCR 757 (832)
Q Consensus 717 ~~~~~F~l~~~~~~~~~~~~~~l~a~sse~eK~~Wl~~L~~ 757 (832)
...+.|.|... ++.+.|+|.+ +.|++.|+.+|++
T Consensus 193 ~~~~~f~iit~------~r~~~~~a~s-~~e~~~Wi~~lq~ 226 (228)
T 3tfm_A 193 DRPNSFVIITA------NRVLHCNADT-PEEMHHWITLLQR 226 (228)
T ss_dssp SCTTEEEEEET------TEEEEEECSS-HHHHHHHHHHHCS
T ss_pred CCCCcEEEEeC------CceEEEEcCC-HHHHHHHHHHHhh
Confidence 45688988654 4589999865 5599999999864
No 193
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=20.31 E-value=4.2e+02 Score=22.93 Aligned_cols=91 Identities=7% Similarity=0.028 Sum_probs=54.1
Q ss_pred eeEEEeecccCcHHHHHHHhhC-CCceEeecCCceEEecCCCCCcccccccccccchhhhCCCCCeEeCHHHHHHHHHhc
Q psy2293 51 CQICVCSNVDQTETFKKALASF-NVPVVLVEDPDYFVHAKFDGPIIIVTSEFTNNFLRFHKPPQSRILGPTALIEMSIKV 129 (832)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~f~g~~i~~~~~~~~~f~~~~~~~~~~i~gp~~v~~~~~~~ 129 (832)
.++.++|..+....+.+.+++. |+.++- ++++= +. .- ...-. +++|+|+..+...+++.
T Consensus 5 ~~vlIiGaG~~g~~l~~~l~~~~g~~vvg-------~~d~~--~~---------~~-g~~i~-g~pV~g~~~l~~~~~~~ 64 (141)
T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQGKEFHPIA-------FIDDD--RK---------KH-KTTMQ-GITIYRPKYLERLIKKH 64 (141)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEE-------EECSC--GG---------GT-TCEET-TEEEECGGGHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE-------EEECC--cc---------cC-CCEec-CeEEECHHHHHHHHHHC
Confidence 5789999888888888888865 322221 12210 10 00 00013 78999987777777766
Q ss_pred cccccCCCCCCCCccccCCCceEEEEcCCCChHhHHHHHHHHHhcCCEEE
Q psy2293 130 ENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLR 179 (832)
Q Consensus 130 ~~~~~~lp~~~~P~~~~~~~g~~i~~tg~~~~~~~~~l~~~v~~~GG~~~ 179 (832)
. ..-+.|++.... .+.+.++...+..+|-.+.
T Consensus 65 ~-----------------id~viia~~~~~-~~~~~~i~~~l~~~gv~v~ 96 (141)
T 3nkl_A 65 C-----------------ISTVLLAVPSAS-QVQKKVIIESLAKLHVEVL 96 (141)
T ss_dssp T-----------------CCEEEECCTTSC-HHHHHHHHHHHHTTTCEEE
T ss_pred C-----------------CCEEEEeCCCCC-HHHHHHHHHHHHHcCCeEE
Confidence 5 122334433333 4567788888888886653
Done!