RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2293
(832 letters)
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 212 bits (541), Expect = 4e-61
Identities = 61/279 (21%), Positives = 110/279 (39%), Gaps = 16/279 (5%)
Query: 390 DESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNEC----ILNQA 445
E+ G S + +EL +E YV +L+ L F + L+ + L +
Sbjct: 11 RENLYFQGGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLARE 70
Query: 446 EMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQD 505
E++ +L I D H+ +L++L+ N+ + +VF+ F + I F
Sbjct: 71 ELRQGLSELPAIHDLHQGILEELEERLSNWESQQKVADVFLAREQGFD-HHATHILQFDR 129
Query: 506 SNSLLKE-KEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDI 564
LL E + R A ++ + + QT L+R VQRL +LL D
Sbjct: 130 YLGLLSENCLHSPRLAAAVREFEQS------VQGGSQTAKHRLLRVVQRLFQYQVLLTDY 183
Query: 565 LKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHR 624
L N S ++ AL I V N++ ++ +N + L I + L+ R
Sbjct: 184 LNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQGD-LLQPGR 242
Query: 625 SFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSK 663
F+ + +++++ LFL DV+ +
Sbjct: 243 EFLKEGTLMKVT---GKNRRPRHLFLMNDVLLYTYPQKD 278
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 206 bits (526), Expect = 6e-60
Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 18/262 (6%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R + EL Q E + + L++ + + +P+ + I+ + E+ IFG L + H
Sbjct: 20 RQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKLS-----IMTEQELNQIFGTLDSLIPLH 74
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLA 521
++LL L+ + + + +G + V Y + + + +LL K+++ R
Sbjct: 75 EELLSQLRDVRKPDGSTEHVGPILVGWLPCLS-SYDSYCSNQVAAKALLDHKKQDHRVQD 133
Query: 522 FLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEA 581
FL+ C + P K L + L P RL LLL +IL++T + D Q L EA
Sbjct: 134 FLQRCLES------PFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEA 187
Query: 582 LDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELSNMLSH 641
++ I+ ++ +N + + + E LI+S R ++ ++
Sbjct: 188 INIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCHGEL------KNN 241
Query: 642 RGDCITLFLFTDVVEVCKKRSK 663
RG + +FLF +V+ + + +
Sbjct: 242 RGVKLHVFLFQEVLVITRAVTH 263
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 206 bits (527), Expect = 2e-59
Identities = 70/308 (22%), Positives = 131/308 (42%), Gaps = 21/308 (6%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +E+ QTE Y + L + +HF PL+ L +M+ IF ++ +F H
Sbjct: 26 RCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR-------FLKPQDMETIFVNIEELFSVH 78
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKE-KEKNSRFL 520
LK+LK + ++ +VF+K+ F VY + + + ++ L +
Sbjct: 79 THFLKELKDALAG-PGATTLYQVFIKYKERFL-VYGRYCSQVESASKHLDQVATAREDVQ 136
Query: 521 AFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSE 580
L+ C + TL DLL+ P+QR+ LLL +++K+T ++ + + L
Sbjct: 137 MKLEECSQR------ANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDAT-EKENLRL 189
Query: 581 ALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELSNMLS 640
ALD +R + +NE K+ + R + + IEN L N R ++++++
Sbjct: 190 ALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGR--PKIDGELKITSVER 247
Query: 641 HRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLS 700
FL + +CK+R ++ S N + + +K + H+ LL
Sbjct: 248 RSKTDRYAFLLDKALLICKRRGDSYDLKASVNLHSFQVRDDSS--GERDNKKWSHMFLLI 305
Query: 701 MTSIKKVY 708
+ Y
Sbjct: 306 EDQGAQGY 313
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 202 bits (516), Expect = 3e-56
Identities = 76/390 (19%), Positives = 149/390 (38%), Gaps = 31/390 (7%)
Query: 330 NFRTPDRAAKRKRLMEVVEEPHSSPRKSRKKRTSDIDGTPRYSCGSLLDYTTSPDNFLAT 389
+ + A+ + +M E S + SD L D + +
Sbjct: 116 SALSWTPIAQNRGIMPFPTEEESVGDEDIYSGLSDQIDDTVEEDEDLYDCVENEEAEGDE 175
Query: 390 DESDVMIKGNSP----------RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNE 439
D+M R +E+ QTE Y + L + +HF PL+
Sbjct: 176 IYEDLMRSEPVSMPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR------ 229
Query: 440 CILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPF 499
L +++IIF ++ + H LK++K + ++ +VF+K+ F VY +
Sbjct: 230 -FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGT-PGAANLYQVFIKYKERFL-VYGRY 286
Query: 500 INFFQDSNSLLKEK-EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSIS 558
+ + ++ L L+ C + TL DLL+ P+QR+
Sbjct: 287 CSQVESASKHLDRVAAAREDVQMKLEECSQR------ANNGRFTLRDLLMVPMQRVLKYH 340
Query: 559 LLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQ 618
LLL +++K+T ++ + + L ALD +R + +NE K+ + R + + IEN
Sbjct: 341 LLLQELVKHTQEAM-EKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQS 399
Query: 619 LINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSL 678
L + R ++++++ FL + +CK+R ++ N +
Sbjct: 400 LAHYGR--PKIDGELKITSVERRSKMDRYAFLLDKALLICKRRGDSYDLKDFVNLHSFQV 457
Query: 679 STYKTQAKHPIDKTYKHIKLLSMTSIKKVY 708
+ + +K + H+ LL + Y
Sbjct: 458 RDDSSGDRD--NKKWSHMFLLIEDQGAQGY 485
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 189 bits (482), Expect = 1e-53
Identities = 68/348 (19%), Positives = 151/348 (43%), Gaps = 34/348 (9%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE++++ LRVL F +++ E ++ + E+ +F +L + + H
Sbjct: 22 RQEVINELFVTEASHLRTLRVLDLIFYQRMKK-----ENLMPREELARLFPNLPELIEIH 76
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKE-KEK 515
+ +K L + I ++ + ++V F ++ + L+K + K
Sbjct: 77 NSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRK 136
Query: 516 NSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDH 575
SRF F++ + P+ + L DL+I +QRL LLL I+K+T +++H
Sbjct: 137 ESRFQLFMQEAESH------PQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 190
Query: 576 QKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP------------PQLINSH 623
+KL A D R ++ ++NE ++ +N+ L + ++ L +
Sbjct: 191 EKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTT 250
Query: 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKT 683
R + + + + + + + L D++ + +K+ + + + T+ S + +T
Sbjct: 251 RKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQT 308
Query: 684 QAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDE 731
P+ K + + S+ + K+ + + + QI+ L S +
Sbjct: 309 --FSPVLKLNA-VLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSD 353
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 188 bits (478), Expect = 8e-53
Identities = 61/312 (19%), Positives = 130/312 (41%), Gaps = 17/312 (5%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R V E+ TE +Y+ L+ + E + + + + ++K+IFG++ I+
Sbjct: 42 RANVINEIMSTERHYIKHLKDICEGYLKQCRK----RRDMFSDEQLKVIFGNIEDIYRFQ 97
Query: 462 KDLLKDL-KYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFL 520
++DL K + IG F++H F +Y + N D+ L + K+SR+
Sbjct: 98 MGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFW-IYSEYCNNHLDACMELSKLMKDSRYQ 156
Query: 521 AFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSE 580
F + C + L ++ + L+ PVQ++ L L ++LK T++ +D++ ++
Sbjct: 157 HFFEACRL------LQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAA 210
Query: 581 ALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP-PQLINSHRSFVLKCDVIELSNML 639
AL +R V +NE K+R +N + + + +++ + ++ +
Sbjct: 211 ALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPY 270
Query: 640 SHRGDCITLFLFTDVVEVCKKRSKYVN--VLKSP-NTSKMSLSTYKTQAKHPIDKTYKHI 696
FLF + +CKK + K + K + + + + K+
Sbjct: 271 GRNQQR-VFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNA 329
Query: 697 KLLSMTSIKKVY 708
L ++V+
Sbjct: 330 FKLHNKETEEVH 341
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 185 bits (471), Expect = 4e-52
Identities = 76/355 (21%), Positives = 141/355 (39%), Gaps = 38/355 (10%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
+V EL +TE YV L L+E + PL+++ L Q E+ ++FG+L + +
Sbjct: 12 LRKVICELLETERTYVKDLNCLMERYLKPLQKET-----FLTQDELDVLFGNLTEMVEFQ 66
Query: 462 KDLLKDLK-------------YLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNS 508
+ LK L+ ++Q S+G F+ + FK +Y F
Sbjct: 67 VEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFK-LYSAFCASHTKVPK 125
Query: 509 LLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNT 568
+L + + ++ F AFL + TL LI+P+QR+ LLL ++ T
Sbjct: 126 VLVKAKTDTAFKAFLDAQNPRQQH-------SSTLESYLIKPIQRVLKYPLLLRELFALT 178
Query: 569 SKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFD--IYQDIENCPPQLINSHRSF 626
S +H L A+ + V + +NE ++ + ++FD I + S
Sbjct: 179 DAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVADLSMGDL 238
Query: 627 VLKCDVIELSNMLSH----RGDCITLFLFTDVVEVCKKR-SKYVNVLKSPNTSKMSLSTY 681
+L VI L+ S + + F+F V + K SK L + +
Sbjct: 239 LLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWD 298
Query: 682 KTQAKHPIDKTYKHIKLLS-----MTSIKKVYNVEDEAHDNDRQIFALRCRGSDE 731
+ +H I ++ L ++ ++ +V+ E+ ++F L C +
Sbjct: 299 PFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPES 353
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 179 bits (456), Expect = 7e-52
Identities = 36/217 (16%), Positives = 82/217 (37%), Gaps = 14/217 (6%)
Query: 391 ESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKII 450
D S + V + + +TE+ Y L+ ++ + PL+ L+ A + +
Sbjct: 3 GFDTTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSE-----KLSSANISYL 57
Query: 451 FGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLL 510
G+L I + L++ L+ + +G F+ K +Y + + ++L
Sbjct: 58 MGNLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVL 117
Query: 511 KEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSK 570
E + F++ G L L +P RL LL ++ ++
Sbjct: 118 TEHSE--ELGEFMETK-------GASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMED 168
Query: 571 SSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFD 607
TD Q + +++ + + E ++R++ + +
Sbjct: 169 YHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQILT 205
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 187 bits (475), Expect = 9e-52
Identities = 58/312 (18%), Positives = 126/312 (40%), Gaps = 17/312 (5%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R V E+ TE +Y+ LR + E + ++ + + ++ +++ IFG++ I+
Sbjct: 119 RTNVINEILSTERDYIKHLRDICEGYVRQCRKRAD----MFSEEQLRTIFGNIEDIYRCQ 174
Query: 462 KDLLKDL-KYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFL 520
K +K L + + +G F++H F+ +Y + N ++ L K S+++
Sbjct: 175 KAFVKALEQRFNRERPHLSELGACFLEHQADFQ-IYSEYCNNHPNACVELSRLTKLSKYV 233
Query: 521 AFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSE 580
F + C + + + + L L+ PVQ++ L L ++LK T D + +
Sbjct: 234 YFFEACRLLQKMIDIS------LDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEA 287
Query: 581 ALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP-PQLINSHRSFVLKCDVIELSNML 639
AL ++ V +NE K+R +N + IE+ L+ + ++ ++
Sbjct: 288 ALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQP- 346
Query: 640 SHRGDCITLFLFTDVVEVCKKRSKYVN--VLKSP-NTSKMSLSTYKTQAKHPIDKTYKHI 696
+ FLF + CKK + K + + + + + + K+
Sbjct: 347 QAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNA 406
Query: 697 KLLSMTSIKKVY 708
L + +
Sbjct: 407 FRLHRGATGDSH 418
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 185 bits (470), Expect = 2e-51
Identities = 60/300 (20%), Positives = 132/300 (44%), Gaps = 31/300 (10%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE++++ LRVL F +++ E ++ + E+ +F +L + + H
Sbjct: 64 RQEVINELFVTEASHLRTLRVLDLIFYQRMKK-----ENLMPREELARLFPNLPELIEIH 118
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKE-KEK 515
+ +K L + I ++ + ++V F ++ + L+K + K
Sbjct: 119 NSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRK 178
Query: 516 NSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDH 575
SRF F++ + P+ + L DL+I +QRL LLL I+K+T +++H
Sbjct: 179 ESRFQLFMQEAESH------PQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 232
Query: 576 QKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP------------PQLINSH 623
+KL A D R ++ ++NE ++ +N+ L + ++ L +
Sbjct: 233 EKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTT 292
Query: 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKT 683
R + + + + + + + L D++ + +K+ + + + T+ S + +T
Sbjct: 293 RKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQT 350
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 173 bits (441), Expect = 5e-49
Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R EL TE NYVN L+++ E F+ PL E +L + E+ +IF + + +
Sbjct: 83 RQGYIHELIVTEENYVNDLQLVTEIFQKPLTESE-----LLTEKEVAMIFVNWKELIMCN 137
Query: 462 KDLLKDLKYLEQNYSDSV---SIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKE-KEKNS 517
LLK L+ ++ + + IG++ + Y F + + +L+++ ++
Sbjct: 138 IKLLKALRVRKKMSGEKMPVKMIGDILSAQ-LPHMQPYIRFCSCQLNGAALIQQKTDEAP 196
Query: 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQK 577
F F+K M+ P L +++P+QR+ L++ +IL+NT ++ DH
Sbjct: 197 DFKEFVKRLAMD------PRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSH 250
Query: 578 LSEALDGIRTVMTFLNENKQRQDNQRSLFDI 608
L AL+ + + +NE + ++N L I
Sbjct: 251 LKHALEKAEELCSQVNEGVREKENSDRLEWI 281
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 173 bits (441), Expect = 6e-48
Identities = 71/355 (20%), Positives = 134/355 (37%), Gaps = 49/355 (13%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE+ +V +LRVL + F P+ E E++ IF L + + H
Sbjct: 28 RQEVISELLVTEAAHVRMLRVLHDLFFQPMAE-----CLFFPLEELQNIFPSLDELIEVH 82
Query: 462 KDLLKDLKYLEQNYSDSVS-IGEVFVKHC-----TAFKKVYPPFINFFQDSNSLLKE-KE 514
L L Q + IG+V + + F+K+ F + + LK +
Sbjct: 83 SLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQR 142
Query: 515 KNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTD 574
K+ RF AF++ P + L D++ +QRL LLL I +NT + T+
Sbjct: 143 KDPRFCAFVQEAESR------PRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT-EEPTE 195
Query: 575 HQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIE 634
+K+ A + R ++ +N+ + ++ L D + ++ +S ++
Sbjct: 196 REKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLD-LSHLRQSSDPMLSEFKNLDI 254
Query: 635 LSNMLSHRGDC-----------ITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKT 683
L H G + + L D++ + +++ + ++ L ++
Sbjct: 255 TKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDE-----------RLLLKSHSR 303
Query: 684 QAKHPIDKTYKHIKLLSMTSIKKVYNVEDE-------AHDNDRQIFALRCRGSDE 731
D +L +TS D D + QI+ L + E
Sbjct: 304 TLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSE 358
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 172 bits (438), Expect = 2e-47
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 35/309 (11%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE +V L+VL + F + + IL+ +E++ IF +L I H
Sbjct: 25 RQEVINELFYTERAHVRTLKVLDQVFYQRVSREG-----ILSPSELRKIFSNLEDILQLH 79
Query: 462 KDLLKDLKYLEQNYSDSV--SIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKE-K 513
L + +K + + SV IGE + + K F + + ++K +
Sbjct: 80 IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQ 139
Query: 514 EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSST 573
+K+SRF F++ N P + L D++ +QRL LLL++I K T + T
Sbjct: 140 KKDSRFQTFVQDAESN------PLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPT 192
Query: 574 DHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP------------PQLIN 621
+ +K+ +A D R ++ F+N+ + +N++ L D + ++ L
Sbjct: 193 EREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDL 252
Query: 622 SHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTY 681
+ R + + ++ N + + L D++ + +K+ + VL+ + S +
Sbjct: 253 TKRKMIHEGPLVWKVN--RDKTIDLYTLLLEDILVLLQKQDDRL-VLRCHSKILASTADS 309
Query: 682 KTQAKHPID 690
K I
Sbjct: 310 KHTFSPVIK 318
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 172 bits (436), Expect = 4e-46
Identities = 65/302 (21%), Positives = 123/302 (40%), Gaps = 30/302 (9%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R EL QTE Y+ L++++E F+ + E L + EM +IF + + ++
Sbjct: 28 RQGYIHELIQTEERYMADLQLVVEVFQKRMAESG-----FLTEGEMALIFVNWKELIMSN 82
Query: 462 KDLLKDLKYLEQNYSDSV---SIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEK-EKNS 517
LLK L+ ++ + + IG++ + + Y F + + +LL++K ++++
Sbjct: 83 TKLLKALRVRKKTGGEKMPVQMIGDILAAELS-HMQAYIRFCSCQLNGAALLQQKTDEDT 141
Query: 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQK 577
F FLK + P L L++P+QR+ LL+ IL+NT +S DH
Sbjct: 142 DFKEFLKKLASD------PRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSS 195
Query: 578 LSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCP---------PQLINSHRSFVL 628
L AL+ + + +NE + ++N L I ++ R +
Sbjct: 196 LKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGPRKLLH 255
Query: 629 KCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHP 688
+L S++ + FLF D + + ++ S + K P
Sbjct: 256 SG---KLYKTKSNKE--LHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTP 310
Query: 689 ID 690
I
Sbjct: 311 IF 312
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 166 bits (421), Expect = 5e-44
Identities = 68/356 (19%), Positives = 135/356 (37%), Gaps = 51/356 (14%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE+ +V +LRVL + F P+ E E++ IF L + + H
Sbjct: 181 RQEVISELLVTEAAHVRMLRVLHDLFFQPMAE-----CLFFPLEELQNIFPSLDELIEVH 235
Query: 462 KDLLKDLKYLEQNYSDSV-SIGEVFVKHC-----TAFKKVYPPFINFFQDSNSLLKE-KE 514
L L Q + IG+V + + F+K+ F + + LK +
Sbjct: 236 SLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQR 295
Query: 515 KNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTD 574
K+ RF AF++ P + L D++ +QRL LLL I +NT + + +
Sbjct: 296 KDPRFCAFVQEAESR------PRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPT-E 348
Query: 575 HQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQ------------LINS 622
+K+ A + R ++ +N+ + ++ L D + ++ + L +
Sbjct: 349 REKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDIT 408
Query: 623 HRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYK 682
+ V + + + + + L D++ + +++ + ++ L ++
Sbjct: 409 KKKLVHEGPLTWRVT--KDKAVEVHVLLLDDLLLLLQRQDE-----------RLLLKSHS 455
Query: 683 TQAKHPIDKTYKHIKLLSMTSIKKVYNVEDE-------AHDNDRQIFALRCRGSDE 731
D +L +TS D D + QI+ L + E
Sbjct: 456 RTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSE 511
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 149 bits (378), Expect = 9e-40
Identities = 49/317 (15%), Positives = 105/317 (33%), Gaps = 46/317 (14%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
+ + K Y+ L ++I+ F+ P N + + +++ IF + I +
Sbjct: 4 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVS----NSKLFSANDVENIFSRIVDIHELS 59
Query: 462 KDLLKDLKYLEQNYSDSVS---IGEVFVKHCTAFK-KVYPPFINFFQDSNSLLKEKEKNS 517
LL ++ + + +G F Y + + + S
Sbjct: 60 VKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 518 RFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQK 577
+ A L L G E + LP LL+ PV LL + + + + D +
Sbjct: 120 KPGAALYL---QSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKS-EDQEDKEC 175
Query: 578 LSEALDGIRTVMTFLNE----------------------NKQRQDNQRSLFDIYQDIENC 615
L +A+ + V + + + K +Q + + +I ++I+
Sbjct: 176 LKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGW 235
Query: 616 P-PQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTS 674
+ F+++ + + R +FLF ++ CK P
Sbjct: 236 EGKDIGQCCNEFIMEGTLTRVGAK-HER----HIFLFDGLMICCKSNH------GQPRLP 284
Query: 675 KMSLSTYKTQAKHPIDK 691
S + Y+ + K + K
Sbjct: 285 GASNAEYRLKEKFFMRK 301
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
RAD9, DNA binding protein; HET: DNA; 2.40A {Homo
sapiens} PDB: 2xnk_A* 2xnh_A*
Length = 298
Score = 142 bits (359), Expect = 8e-38
Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 9/282 (3%)
Query: 50 PCQICVCSNVDQTETFKKALASF----NVPVVLVEDPDYFVHAKFDGPIIIVTSEFTNNF 105
P + + D ++ F KAL S + + + + + K + + + F+
Sbjct: 8 PFFVKFLKSSDNSKCFFKALESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVV 67
Query: 106 LRFHKPPQSRILGPTALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETM 165
K RI+GP +I + +P P++ M ++ I T K++
Sbjct: 68 FDHLKKLGCRIVGPQVVIF-CMH-HQRCVPRAEH--PVYNMVMSDVTISCTSL-EKEKRE 122
Query: 166 KLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDV 225
++ + MGG++ +++N VTHLIA V +KY A + P+L ++ + WEK +
Sbjct: 123 EVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEK 182
Query: 226 NFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVV 285
M +K +F G + G D +++Q+L + +GG+ TH++
Sbjct: 183 KITRYTDINMEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLI 242
Query: 286 VDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLF 327
V + K + + V +WF+ SI+ C DES Y
Sbjct: 243 VQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKT 284
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 140 bits (354), Expect = 1e-36
Identities = 66/346 (19%), Positives = 126/346 (36%), Gaps = 53/346 (15%)
Query: 391 ESDVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKII 450
E + K V EL +TE YV+ L ++E + + + + +I+
Sbjct: 2 EEEQKKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQ---GVPESLRGRDRIV 58
Query: 451 FGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLL 510
FG++ I++ H+D L+ L++ D + ++F+KH +Y + S ++
Sbjct: 59 FGNIQQIYEWHRDYF--LQELQRCLKDPDWLAQLFIKHERRLH-MYVVYCQNKPKSEHVV 115
Query: 511 KEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSK 570
E ++ + L + L DLLI+PVQR+ LLL D LK ++
Sbjct: 116 SEFGD-----SYFEELRQQLGH-------RLQLNDLLIKPVQRIMKYQLLLKDFLKYYNR 163
Query: 571 SSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKC 630
+ D L +A++ + V N+ L + +L+ +V +
Sbjct: 164 AGMDTADLEQAVEVMCFVPKRCNDMM----TLGRLRGFEGKLTAQ-GKLLGQDTFWVTEP 218
Query: 631 DVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPID 690
+ L + +FLF ++ + + Y
Sbjct: 219 EAGGLLSSRGRE---RRVFLFEQIIIFSEALGG--------GVRGGTQPGYV-------- 259
Query: 691 KTYK-HIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIET 735
YK IK+ + +E + + FAL RG + I+
Sbjct: 260 --YKNSIKVSCLG-------LEGNLQGDPCR-FALTSRGPEGGIQR 295
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 134 bits (338), Expect = 2e-34
Identities = 71/337 (21%), Positives = 123/337 (36%), Gaps = 48/337 (14%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNEC-ILNQAEMKIIFGDLCPIFDT 460
R V EL TE YV L ++E + ++ L + Q + I+FG++ I+
Sbjct: 12 RRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHF 71
Query: 461 HKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFL 520
H + LE +G F++ F ++Y + S SL ++
Sbjct: 72 HNRIFLRE--LESCIDCPELVGRCFLERMEEF-QIYEKYCQNKPRSESLWRQCSDC---- 124
Query: 521 AFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSE 580
F + C L K +L L++PVQR+ LLL ++LK + K + L E
Sbjct: 125 PFFQECQKKLD-------HKLSLDSYLLKPVQRITKYQLLLKEMLKYS-KHCEGAEDLQE 176
Query: 581 ALDGIRTVMTFLNENKQR---QDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELSN 637
AL I ++ +N++ +L D+ + + + H+ K +
Sbjct: 177 ALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTK-----VKE 231
Query: 638 MLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIK 697
+ + LFL V CKKR + +Y YK
Sbjct: 232 LARFKPMQRHLFLHEKAVLFCKKR-------EENGEGYEKAPSYS----------YKQS- 273
Query: 698 LLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIE 734
L+MT++ NV+ + F + +EV
Sbjct: 274 -LNMTAVGITENVKGDTKK-----FEIWYNAREEVYI 304
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 128 bits (324), Expect = 6e-33
Identities = 62/338 (18%), Positives = 112/338 (33%), Gaps = 55/338 (16%)
Query: 397 KGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCP 456
K + + EL QTE YV LR ++ + + + + + IIFG++
Sbjct: 5 KSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGI-VNKELIIFGNMQE 63
Query: 457 IFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKN 516
I++ H ++ LK LE+ +G FV F+ +Y + DS L+ E
Sbjct: 64 IYEFHNNIF--LKELEKYEQLPEDVGHCFVTWADKFQ-MYVTYCKNKPDSTQLILEHAG- 119
Query: 517 SRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQ 576
++ ++ LI+PVQR+ LLL ++L +
Sbjct: 120 ----SYFDEIQQRHGL-------ANSISSYLIKPVQRITKYQLLLKELLTCCEE---GKG 165
Query: 577 KLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELS 636
++ + L+ + +V N+ + + + +LI V +
Sbjct: 166 EIKDGLEVMLSVPKRANDAMHLSMLEG-----FDENIESQGELILQESFQVWDPKTLIRK 220
Query: 637 NMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHI 696
H LFLF + K+ S Y YK
Sbjct: 221 GRERH------LFLFEMSLVFSKEVKD-----------SSGRSKYL----------YKS- 252
Query: 697 KLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDEVIE 734
L + + +VE + ++ R SD I
Sbjct: 253 -KLFTSELGVTEHVEGDPCKF--ALWVGRTPTSDNKIV 287
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 109
Score = 89.6 bits (222), Expect = 1e-21
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 233 SFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVT 292
S + +K+ FQ ++F GFS+E++ ++E+ GG D TH++V+++ V
Sbjct: 3 SGSSGFKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGD-ERCTHLIVEENTVK 61
Query: 293 CMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGKNFRTP 334
+P P +VVK WFW SIQ A E+ YL+ K
Sbjct: 62 DLPFEPSKKLFVVKQEWFWGSIQMDARAGETMYLYEKANTPE 103
Score = 53.0 bits (127), Expect = 9e-09
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 149 QNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRVP 208
Q+ ++ GF + +E + ++T+ GG + + THLI + + + ++
Sbjct: 14 QDCILSFLGF-SDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLF 72
Query: 209 VLTKEFV 215
V+ +E+
Sbjct: 73 VVKQEWF 79
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing
factor, phosphoprotein, polymorphism, proto-oncogene,
structural genomics; 1.48A {Homo sapiens}
Length = 112
Score = 83.8 bits (207), Expect = 1e-19
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 217 SAWEKRYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSS 276
R ++ F + FQ ++F GFS+E++ ++E+ GGK
Sbjct: 6 HHSSGRENLYF----------QGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLG 55
Query: 277 DEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGKNFRTPD 335
D TH+VV+++ V +P P YVVK WFW SIQ A E+ YL+ K TP+
Sbjct: 56 D-ERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDARAGETMYLYEKA-NTPE 112
Score = 58.7 bits (142), Expect = 1e-10
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRV 207
Q+ ++ GF + +E + ++T+ GGK + + THL+ + + ++
Sbjct: 22 FQDCILSFLGF-SDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKL 80
Query: 208 PVLTKEFV---LSAW----EKRYDVNFKADEP 232
V+ +E+ + E Y KA+ P
Sbjct: 81 YVVKQEWFWGSIQMDARAGETMYLYE-KANTP 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 88.4 bits (218), Expect = 5e-18
Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 214/638 (33%)
Query: 158 FRNKQETMKLIDITKHMGGKLRKEMN-YQVTHLIANCVSGEKYKYAMGFRVPV------- 209
F + + DI + V + + +S E+ + + + V
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 210 ---------LTKEFVLSAWEKRYD-----VNFKADEPSFM----NQYKLKLFQGAKVNFF 251
+ ++FV Y + + +PS M + + +L+ +V
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--- 125
Query: 252 GFS------EEDEEQLQELLLS---------NG----GKPSLSSDEPLTTHVVVDDSKVT 292
F+ + +L++ LL +G GK ++ D V KV
Sbjct: 126 -FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-------VCLSYKVQ 177
Query: 293 C-MPNVPCTSTYVVKARWFWMSIQNSECADES-------KYLFGKNF------------R 332
C M + FW++++N + Y N+ R
Sbjct: 178 CKMDF-----------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 333 TPDRAAKRKRLMEVVEEPHS--------SPR---------K----SRKKRTSDIDGTPRY 371
A+ +RL++ + + + K +R K+ +D
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 372 SCGSLLDYTT--SPD-------NFLATDESDV---MIKGNSPRH-QVFKELCQTESNYVN 418
+ SL ++ +PD +L D+ ++ N PR + E +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLA--- 342
Query: 419 VLRVLIEHFKNPLEEKLNT--NECI--LNQAEMKIIFGDLCPIF--DTH--KDLLKDLKY 470
+++K+ +KL T + L AE + +F L +F H LL + +
Sbjct: 343 ----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLI-W 396
Query: 471 LEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCYMNL 530
+ SD V V K SL++++ K S + Y+ L
Sbjct: 397 FDVIKSDV----MVVVNKL--HKY-------------SLVEKQPKESTI--SIPSIYLEL 435
Query: 531 RDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTD---------HQK---L 578
+ + ++ L ++ + +D++ D H K
Sbjct: 436 K---VKLENEYALHRSIVDHYNIP--KTFDSDDLIPP----YLDQYFYSHIGHHLKNIEH 486
Query: 579 SEALDGIRTVMTFLN----ENKQRQDN-----QRSLFDIYQDI--------ENCPP--QL 619
E + R V FL+ E K R D+ S+ + Q + +N P +L
Sbjct: 487 PERMTLFRMV--FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 620 INSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEV 657
+N+ F+ K + N++ + +TD++ +
Sbjct: 545 VNAILDFLPKIE----ENLICSK--------YTDLLRI 570
Score = 67.6 bits (164), Expect = 1e-11
Identities = 65/455 (14%), Positives = 142/455 (31%), Gaps = 142/455 (31%)
Query: 403 HQVFKELCQTESNYVNVLRVLIEHFKNPLEEK--LNTNECILNQAEMKIIFGDLCP---- 456
H + E + + Y ++L V + F + + K + + IL++ E+ I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 457 --IFDT--------HKDLLKDLKYLEQNYSDSVSIGEVFVKHC---TAFKKVYPPFINFF 503
+F T + ++++ L NY + + ++Y +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEV--LRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 504 QDSNSLLKEKEKNSRFLAFLKL--CYMNLRDL------GLPEIDKQTL------------ 543
+ N + K SR +LKL + LR G+ K +
Sbjct: 120 YNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 544 ----------------PDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRT 587
P+ ++ +Q+L + + + + SS ++ +R
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 588 VMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSFVLKCDVIELSNMLSHRGDCIT 647
++ + + + L + +++N + N +F L C ++ + R +T
Sbjct: 237 LL-------KSKPYENCL-LVLLNVQN--AKAWN---AFNLSCKILLTT-----RFKQVT 278
Query: 648 LFL----------------FT--DVVEVCKKRSKYVNVLKS--P----NTSKMSLSTYKT 683
FL T +V + KY++ P T+ LS
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 684 QAKHPID--KTYKHIKLLSMTS-IKKVYNVEDEAHDNDRQ------IFALRCRGSDEVIE 734
+ + +KH+ +T+ I+ NV + R+ +F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMFDRLSVF------PPSA-- 385
Query: 735 TTYSFNIIDDTL----------DKMSFLRELCRQA 759
+I L D M + +L + +
Sbjct: 386 -----HIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Score = 62.9 bits (152), Expect = 4e-10
Identities = 89/648 (13%), Positives = 182/648 (28%), Gaps = 230/648 (35%)
Query: 28 EVDCSIMQPSEETEEKDTEPGMPCQI--CVCSNVDQTETFKKALASFNVPVVLVEDPDY- 84
E+D IM + ++ + S Q E +K + V +Y
Sbjct: 50 EIDHIIMSKDAVSGTL--------RLFWTLLSK--QEEMVQKFVEE-------VLRINYK 92
Query: 85 FVHAKFDGPIIIVTSEFTNNFLRFHKPPQSRILGPTALIEMSIKVENLSIPLRTRIRPLF 144
F+ + S T ++ + + ++ + LR + L
Sbjct: 93 FLMSPIKTEQRQ-PSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQPYLKLRQALLEL- 147
Query: 145 CHSMQNIVICITGFRNKQETMKLIDITKHMGG--KLRKEMNYQVTHLIANCVSGEKYKYA 202
+N++I G + G K T + + K +
Sbjct: 148 -RPAKNVLID--G----------------VLGSGK---------TWVALDVCLSYKVQCK 179
Query: 203 MGFRV------PVLTKEFVLSAWEKRY---DVNFKADEPSFMNQYKLKLFQGAKVNFFGF 253
M F++ + E VL +K D N+ + + KL++
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRI----------- 227
Query: 254 SEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD---SKVTCMPNVPC----TS----- 301
+ +L+ LL S + L +V+ + +K N+ C T+
Sbjct: 228 -HSIQAELRRLLKSKPYENCL---------LVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 302 -TYVVKARWFWMSIQNSECA---DESKYLFGKNFRTPDRAAKRKRLMEVVEEPHS----S 353
++ A +S+ + DE K L K + P +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-----------CRPQDLPREVLTTN 326
Query: 354 PR------KSRKKRTSDIDGTPRYSCGSL-------LDYTTS-------------PDN-- 385
PR +S + + D +C L L+ P +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 386 ---------FLATDESDVM-----------IKGNSPR-----HQVFKELCQTESNYVNVL 420
+ +SDVM ++ ++ EL N +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 421 RVLIEHFKNPLEEKLNTNECI---------------LNQAEM-------KIIFGDL---- 454
R +++H+ P + ++++ I L E +++F D
Sbjct: 447 RSIVDHYNIP--KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 455 ---------CPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQD 505
+ + L+ LK+ Y + + ++++ ++F
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKF----YKPYIC------DNDPKYERLVNAILDFLPK 554
Query: 506 SNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQR 553
L S++ L++ M + E KQ VQR
Sbjct: 555 IEENL----ICSKYTDLLRIALMAEDEAIFEEAHKQ---------VQR 589
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 80.2 bits (197), Expect = 2e-15
Identities = 44/287 (15%), Positives = 95/287 (33%), Gaps = 36/287 (12%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
+ + K Y+ L ++I+ F+ P + + +++ IF + I +
Sbjct: 201 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSK----LFSANDVENIFSRIVDIHELS 256
Query: 462 KDLLKDLKYLEQNYSDSVS---IGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSR 518
LL ++ + + +G F + P+ ++ +D S+
Sbjct: 257 VKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELA--FDPYESYARDILRPGFHDRFLSQ 314
Query: 519 FLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKL 578
Y+ G E + LP LL+ PV LL L+ S+ D + L
Sbjct: 315 LSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLK-QLEEKSEDQEDKECL 373
Query: 579 SEALDGIRTVMTFLNE----------------------NKQRQDNQRSLFDIYQDIENCP 616
+A+ + V + + + K +Q + + +I ++I+
Sbjct: 374 KQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWE 433
Query: 617 PQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSK 663
+ I + + + R +FLF ++ CK
Sbjct: 434 GKDIGQCCNEFIMEGTLTRVGAKHER----HIFLFDGLMICCKSNHG 476
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A
{Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Length = 229
Score = 73.3 bits (179), Expect = 1e-14
Identities = 38/211 (18%), Positives = 77/211 (36%), Gaps = 30/211 (14%)
Query: 146 HSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSG------EKY 199
+ ++I + ++G +E M + + L + + TH+I + KY
Sbjct: 3 RAERDISMVVSGL-TPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKY 61
Query: 200 KYAMGFRVPVLTKEFVLSAWEKR-------YDVNFKADEPSF------MNQYKLKLFQGA 246
+ +++ +V+ + ++R ++V S + + KLF+G
Sbjct: 62 FLGIAGGKWIVSYSWVIKSIQERKLLSVHEFEVKGDVVTGSNHQGPRRSRESQEKLFEGL 121
Query: 247 KVNFFG-FSEEDEEQLQELLLSNGGK-----PSLSSDEPLTTHVVVDDSKVTCMPNVPCT 300
++ F+ +++L+ +L G P L+ D V+V S T + P
Sbjct: 122 QIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDI 181
Query: 301 ST----YVVKARWFWMSIQNSECADESKYLF 327
+V W SI C D YL
Sbjct: 182 GQLCKGRLVMWDWVLDSISVYRCRDLDAYLV 212
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III,
poly(ADP-ribose) polymerase-1, DNA polymerase beta,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 129
Score = 69.9 bits (171), Expect = 2e-14
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 135 PLRTRIRP-LFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANC 193
P R R P +Q +V+ ++GF+N + +L D +G K R + THLI
Sbjct: 9 PRRPRAGPEELGKILQGVVVVLSGFQNPFRS-ELRDKALELGAKYRPDWTRDSTHLICAF 67
Query: 194 VSGEKYKYAMGFRVPVLTKEFVLSAWEKR 222
+ KY +G ++ KE+VL R
Sbjct: 68 ANTPKYSQVLGLGGRIVRKEWVLDCHRMR 96
Score = 53.3 bits (128), Expect = 1e-08
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 228 KADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGK--PSLSSDEPLTTHVV 285
+ P + K+ QG V GF +L++ L G K P + D +TH++
Sbjct: 8 EPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRD---STHLI 64
Query: 286 VDD---SKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGKNFRTPDR 336
K + + +V+ W + +YL + +
Sbjct: 65 CAFANTPKYSQVLG---LGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGSSSEE 115
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide
complex, antitumor protein; HET: SEP; 1.85A {Homo
sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A*
1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A
3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A
2ing_X 1oqa_A
Length = 214
Score = 71.7 bits (175), Expect = 3e-14
Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 31/209 (14%)
Query: 149 QNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSG------EKYKYA 202
+ + + ++G +E M + + L + + TH++ + KY
Sbjct: 3 KRMSMVVSGL-TPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLG 61
Query: 203 MGFRVPVLTKEFVLSAWEKRYDVN-----FKADEPSFMNQYKLK---------LFQGAKV 248
+ V++ +V + ++R +N + D + N K +F+G ++
Sbjct: 62 IAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEI 121
Query: 249 NFFG-FSEEDEEQLQELLLSNGGK---PSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTY- 303
+G F+ +QL+ ++ G S H +V + +
Sbjct: 122 CCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQ 181
Query: 304 -----VVKARWFWMSIQNSECADESKYLF 327
VV W S+ +C + YL
Sbjct: 182 MCEAPVVTREWVLDSVALYQCQELDTYLI 210
Score = 41.3 bits (96), Expect = 5e-04
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 11/100 (11%)
Query: 252 GFSEEDEEQLQELLLSNGGK--PSLSSDEPLTTHVVVDDSKVTCMPNVP------CTSTY 303
G + E+ + + + ++ + TTHVV+ +
Sbjct: 11 GLTPEEFMLVYKFARKHHITLTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKW 67
Query: 304 VVKARWFWMSIQNSECADESKYLFGKNFRTPDRAAKRKRL 343
VV W SI+ + +E + + KR
Sbjct: 68 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRA 107
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger,
zinc-binding protein, ubiquitin LI antitumor protein;
1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Length = 210
Score = 70.5 bits (172), Expect = 7e-14
Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 36/204 (17%)
Query: 151 IVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIAN---CVSGEKYKYAMGFRV 207
+V+ +G + ++ L ++ + K E + VTH++ S K +
Sbjct: 3 LVLIGSGL-SSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGC 61
Query: 208 PVLTKEFVLSAW-------EKRYDV-NFKADEPSFMNQYKLKLFQGAKVNFFG-FSEEDE 258
+L E+V + E++Y++ Q KLF G +G F +
Sbjct: 62 WILKFEWVKACLRRKVCEQEEKYEIPEGPRRSRLNREQLLPKLFDGCYFYLWGTFKHHPK 121
Query: 259 EQLQELLLSNGGK----------------------PSLSSDEPLTTHVVVDDSKVTCMPN 296
+ L +L+ + GG+ SD+ T ++ + P
Sbjct: 122 DNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHPE 181
Query: 297 VPCTST-YVVKARWFWMSIQNSEC 319
+ + WF + + E
Sbjct: 182 RVRQGKVWKAPSSWFIDCVMSFEL 205
Score = 47.4 bits (112), Expect = 5e-06
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 252 GFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPC---TSTYVVKAR 308
G S E ++ L EL + K + + THVVV V +++K
Sbjct: 9 GLSSEQQKMLSELAVILKAK-KYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFE 67
Query: 309 WFWMSIQNSECADESKYLFGKNFRTPDRAAKRKR 342
W ++ C E KY + R ++
Sbjct: 68 WVKACLRRKVCEQEEKYEIPEGPRRSRLNREQLL 101
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET:
SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A*
3sht_A 3shv_A*
Length = 199
Score = 64.0 bits (155), Expect = 1e-11
Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 27/199 (13%)
Query: 149 QNIVICITGFRNKQETMKLIDITKHMGG-KLRKEMNYQVTHLIAN-CVSGEKYKYAMGFR 206
+ +T ++++ + +I + + G + ++ TH+++ + +
Sbjct: 10 PTRTLVMTSMPSEKQNV-VIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARG 68
Query: 207 VPVLTKEFVL---------------SAWEKRYDVNFKADEPSFMNQYKLKLFQGAKVNFF 251
VL+ ++VL + +++ Y+ LF V F
Sbjct: 69 CWVLSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPVMFV 128
Query: 252 G-FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWF 310
S +L EL+ GG+ S P +V+ V + +W
Sbjct: 129 SPASSPPVAKLCELVHLCGGR---VSQVPRQASIVIGPYSGKKKATVKY-----LSEKWV 180
Query: 311 WMSIQNSECADESKYLFGK 329
SI + YL +
Sbjct: 181 LDSITQHKVCAPENYLLSQ 199
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains
histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens}
PDB: 2azm_A* 3k05_A* 2ado_A
Length = 209
Score = 62.4 bits (151), Expect = 5e-11
Identities = 26/204 (12%), Positives = 65/204 (31%), Gaps = 33/204 (16%)
Query: 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVS-GEKYKYAMGF 205
+ TG + + + +GG L + +HL+ + + K+ A+G
Sbjct: 9 ESTAPKVLFTGVVDARGERAV----LALGGSLAGSAA-EASHLVTDRIRRTVKFLCALGR 63
Query: 206 RVPVLTKEFVLSAWEKRYDVNFK---------------ADEPSFMNQYKLKLFQGAKVNF 250
+P+L+ +++ + + + + + + + + +L +G ++
Sbjct: 64 GIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYV 123
Query: 251 FGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVV---DDSKVTCMP----NVPCTSTY 303
+ Q+ E++ GG S VV C +P
Sbjct: 124 TPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPL---- 179
Query: 304 VVKARWFWMSIQNSECADESKYLF 327
+ + + E E+ L
Sbjct: 180 -LSPEFLLTGVLKQEAKPEAFVLS 202
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET:
SEP; 2.15A {Homo sapiens}
Length = 219
Score = 61.9 bits (150), Expect = 6e-11
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 30/191 (15%)
Query: 152 VICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIAN-CVSGEKYKYAMGFRVPVL 210
+ TGF + + I +GG++ + + THLIA+ K+ A+ ++
Sbjct: 18 FVLFTGF-EPVQVQQYIKKLYILGGEVAESAQ-KCTHLIASKVTRTVKFLTAISVVKHIV 75
Query: 211 TKEFVLSAWEKRYDVNFKADEP---------------SFMNQYKLKLFQGAKVNFFGFSE 255
T E++ + + ++ + S + LF+
Sbjct: 76 TPEWLEECFRCQKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGIC 135
Query: 256 EDEEQLQELLLSNGGK-----PSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTY------- 303
++ ++ GGK PS + + + + N
Sbjct: 136 PSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGID 195
Query: 304 VVKARWFWMSI 314
V A + +
Sbjct: 196 VHNAEFVLTGV 206
Score = 49.2 bits (117), Expect = 1e-06
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 12/118 (10%)
Query: 236 NQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTC-M 294
+ KL V F GF +Q + L GG+ ++ TH++ T
Sbjct: 7 HHMKLTPELTPFVLFTGFEPVQVQQYIKKLYILGGE--VAESAQKCTHLIASKVTRTVKF 64
Query: 295 PNVPCTSTYVVKARWFWMSIQNSECADESKYL---------FGKNFRTPDRAAKRKRL 343
++V W + + DE Y+ F + + A L
Sbjct: 65 LTAISVVKHIVTPEWLEECFRCQKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPL 122
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein
binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo
sapiens} PDB: 3al3_A*
Length = 235
Score = 62.1 bits (150), Expect = 9e-11
Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 46/228 (20%)
Query: 144 FCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNY--QVTHLIAN-CVSGEKYK 200
+ + ++ N QE + + + +GG + ++ + TH++ + EKY
Sbjct: 3 LGSLKKQYIFQLSSL-NPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYL 61
Query: 201 YAMGFRVPVLTKEFVLSAW-------EKRYDVNFKADEPSFMN----------------- 236
++ VL + ++ + E+ Y+ +
Sbjct: 62 ASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRK 121
Query: 237 --------QYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGK---PSLSSDEPLTTHVV 285
F G KV + E + LL S G K TH+
Sbjct: 122 KIQQRQESGIVEGAFSGWKV-ILHVDQSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLF 180
Query: 286 VDDSKVTC------MPNVPCTSTYVVKARWFWMSIQNSECADESKYLF 327
D +K+ + + Y ++ + + Y
Sbjct: 181 SDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCL 228
Score = 47.5 bits (112), Expect = 5e-06
Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 21/160 (13%)
Query: 252 GFSEEDEEQLQELLLSNGGKPSLSSD-EPLTTHVVVDDSKVTC-MPNVPCTSTYVVKARW 309
+ ++ L+ GG +P TH+VV +V+ +
Sbjct: 16 SLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSY 75
Query: 310 FWMSIQNSECADESKYLFGKNFRTPDRAAKRKRLMEVVEEPHSSPRKSRKKRTSDIDGTP 369
E Y +G + + + + RKK
Sbjct: 76 LEACRTAGHFVQEEDYEWG----SSSILDVLTGINVQQRRLALAAMRWRKKIQQ--RQES 129
Query: 370 RYSCGSLLDYTTSPDNFLATDESDVMIKGNSPRHQVFKEL 409
G+ + V++ + R FK L
Sbjct: 130 GIVEGAFSGWK-------------VILHVDQSREAGFKRL 156
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat,
phosphoserine binding domain, DNA repair, cell division,
mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe}
PDB: 3l40_A*
Length = 220
Score = 60.7 bits (147), Expect = 2e-10
Identities = 28/202 (13%), Positives = 66/202 (32%), Gaps = 39/202 (19%)
Query: 147 SMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSG-EKYKYAMGF 205
+ + + I TG+ K L K + + + + THLIA + K+ ++ +
Sbjct: 5 ASKRVYITFTGYDKKPSIDNL----KKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPY 59
Query: 206 RVPVLTKEFVLSAWEKRYDVN---FKADEPSFMNQYKL--------------KLFQGAKV 248
V+T +++ S + V+ + ++P + L + V
Sbjct: 60 GPCVVTMDWINSCLKTHEIVDEEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVV 119
Query: 249 NFFG--FSEEDEEQLQELLLSNGGK-------PSLSSDEPLTTHVVV---DDSKVTCMPN 296
+ E+ + ++ SNGG + +VV+ ++
Sbjct: 120 YLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNF 179
Query: 297 VPCTSTY----VVKARWFWMSI 314
+ S + W ++
Sbjct: 180 LDNASQNKTIFLQNYDWLIKTV 201
Score = 38.8 bits (90), Expect = 0.004
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 253 FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVT-----CMPNVPCTSTYVVKA 307
F+ D++ + L + + + TH++ T +P P VV
Sbjct: 13 FTGYDKKPSIDNLKKLDMSITSNPSK--CTHLIAPRILRTSKFLCSIPYGP----CVVTM 66
Query: 308 RWFWMSIQNSECADESKYLFG 328
W ++ E DE YL
Sbjct: 67 DWINSCLKTHEIVDEEPYLLN 87
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT,
topoisomerase II binding protein, checkpoint; NMR {Homo
sapiens} SCOP: c.15.1.5
Length = 132
Score = 58.4 bits (141), Expect = 2e-10
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 235 MNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGK--PSLSSDEPLTTHVVVD--DSK 290
Q L G ++ GFS ++L+ L+ S GG L+ D THV+V D +
Sbjct: 33 AFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNED---VTHVIVGDYDDE 89
Query: 291 VTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLF 327
+ N +VV A+W E Y+
Sbjct: 90 LKQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPYIH 126
Score = 51.4 bits (123), Expect = 6e-08
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 120 TALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLR 179
+ L +ENL + L I + GF + + KL + GG
Sbjct: 17 SKLEPTLENLENLDVSAFQAPEDLL----DGCRIYLCGFSGR-KLDKLRRLINSGGGVRF 71
Query: 180 KEMNYQVTHLIANCVSGEKYKY--AMGFRVPVLTKEFVLSAWEKRYDVNFKADEPSFM 235
++N VTH+I E ++ R V+ +++L + K Y E ++
Sbjct: 72 NQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLECFSKGY----MLSEEPYI 125
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA
replication, translession synthesis, TLS, DNA polymerase
zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Length = 97
Score = 55.6 bits (134), Expect = 8e-10
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVD---DSKVTCMPNV 297
+F G + G+++ E+L++L++ +GG+ + TTH++ ++K+ +
Sbjct: 11 TIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGE 70
Query: 298 PCTSTYVVKARWFWMSIQNSECADESKYL 326
V++ W SI+ Y
Sbjct: 71 K-----VIRPEWIVESIKAGRLLSYIPYQ 94
Score = 42.9 bits (101), Expect = 2e-05
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNY-QVTHLIANCVSGEKYKYAMGFR 206
+ I + G+ + +L + GG+ + + TH+IA + K K G +
Sbjct: 13 FSGVAIYVNGYTDP-SAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEK 71
Query: 207 V 207
V
Sbjct: 72 V 72
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 56.2 bits (135), Expect = 3e-09
Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 31/177 (17%)
Query: 567 NTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIENCPPQLINSHRSF 626
T + + + L+++L ++ V+ ++ + + L +IY ++ + S + F
Sbjct: 2 MTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMF 61
Query: 627 VLKCDVIELSNMLSHRGDC-----------ITLFLFTDVVEVC-KKRSKYVNVLKSPNTS 674
L G + L TD++ +K KY+ ++
Sbjct: 62 ---AKEDLKRKKLVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKST 118
Query: 675 KMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRGSDE 731
+SL + +K I D ++ + +E
Sbjct: 119 VISLKKLIVREVAHEEKGLFLIS----------------MGMTDPEMVEVHASSKEE 159
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
cell cycle checkpoints, acetylation, cytoplasm,
cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens}
PDB: 3pd7_A* 3jve_A*
Length = 107
Score = 54.1 bits (130), Expect = 3e-09
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGE---KYKYAMG 204
+ +V+C++ +K+++ +L I +G R+ + VTH I + +YK
Sbjct: 16 LHKVVVCVSKKLSKKQS-ELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKE 74
Query: 205 FRVPVLTKEFV---LSAW----EKRYDVNFKA 229
V ++++ ++ E Y +
Sbjct: 75 RGVHIVSEHWLLDCAQECKHLPESLYPHTYNG 106
Score = 43.7 bits (103), Expect = 2e-05
Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 8/100 (8%)
Query: 231 EPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGK--PSLSSDEPLTTHVVVDD 288
E + K V + + +L + S G S TH +
Sbjct: 4 EAQSEKEEAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDET---VTHFIYQG 60
Query: 289 SKVTCMPNVPC---TSTYVVKARWFWMSIQNSECADESKY 325
++V W Q + ES Y
Sbjct: 61 RPNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESLY 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 4e-09
Identities = 82/495 (16%), Positives = 154/495 (31%), Gaps = 164/495 (33%)
Query: 384 DNFLAT--DESDVMIKGNSPRHQVFKELC-------------QTESNYVNVLRVLIEHFK 428
+ F + ++ + P EL + VL + + F
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF- 91
Query: 429 NPLEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKH 488
C L ++ + L DT L+K + + +NY +
Sbjct: 92 ---------ENCYLEGNDIHALAAKLLQENDT--TLVKTKELI-KNYITA---------- 129
Query: 489 CTAFKKVYPPFINFFQDSNSLLKE--KEKNSRFLA-F----LKLCYMN-LRDLGLPEIDK 540
K+ + SNS L E N++ +A F Y LRDL
Sbjct: 130 RIMAKRPFDKK------SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY------ 177
Query: 541 QTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKL-SEALDGIRTVMTFLNENKQRQ 599
QT L+ ++ + L +++ D +K+ ++ L+ ++ +L
Sbjct: 178 QTYHVLVGDLIKFSA-------ETLSELIRTTLDAEKVFTQGLN----ILEWL------- 219
Query: 600 DNQRSLFDIYQDIENCPPQ--LINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEV 657
++ N P + L++ S L I + L+H
Sbjct: 220 ----------ENPSNTPDKDYLLSIPISCPL----IGVIQ-LAH---------------- 248
Query: 658 CKKRSKYVNVLK----SPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDE 713
YV K +P + L ++ L++ +I + + +
Sbjct: 249 ------YVVTAKLLGFTPGELRSYLKGATGHSQ----------GLVTAVAIAET-DSWES 291
Query: 714 AHDNDRQI----FALRCRGSDEVIETTYSFNIIDDTLDK-------MSFLRELCRQASAV 762
+ R+ F + R + T+ +I++D+L+ M + L ++
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 763 YCINFDKFLED-----ISLAN-ASSFNIETHESS----NSTLGRAIKFASK--QVGRTLS 810
Y + L ISL N A + + S N TL R K S Q
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-RKAKAPSGLDQ------ 404
Query: 811 LNRTPSTLRKVMSSM 825
+R P + RK+ S
Sbjct: 405 -SRIPFSERKLKFSN 418
Score = 59.3 bits (143), Expect = 4e-09
Identities = 84/608 (13%), Positives = 172/608 (28%), Gaps = 228/608 (37%)
Query: 279 PLT-THVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGKNFRTPDRA 337
PLT +H + + VP T+++ + A + + F K P
Sbjct: 8 PLTLSH-----GSLEHVLLVP-TASFFI--------------ASQLQEQFNKILPEPTEG 47
Query: 338 AKRKRLMEVVEEPHSSPRKSRKKRTSDIDGTPRYSCGSLLDYTTS---PDNFLATD---- 390
+EP T+ + ++ L Y +S P D
Sbjct: 48 ------FAADDEP-----------TTPAELVGKF-----LGYVSSLVEPSKVGQFDQVLN 85
Query: 391 ------ESDVMIKGNSPRHQVFKELCQTES-----------NYVNVLRVLIEHFKNPLEE 433
E+ + +GN H + +L Q NY+ + F
Sbjct: 86 LCLTEFENCYL-EGNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 434 KLNTNECILNQAEMKI--IFG----------DLCPIFDTHKDLLKDL-----KYLEQNYS 476
L + + ++ IFG +L ++ T+ L+ DL + L +
Sbjct: 144 ALFRA---VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE--- 197
Query: 477 DSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEK--NSRFLA-------FLKL-- 525
++ +KV+ +N + L+ + +L + +
Sbjct: 198 --------LIRTTLDAEKVFTQGLNILE----WLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 526 --CYMN-LRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDIL--KNTSKSSTD---HQK 577
Y+ + LG P L L + ++ +++ +
Sbjct: 246 LAHYVVTAKLLGFT-------PGEL---RSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 578 LSEALD-----GIRTVMTFLNEN---KQRQDNQR---------------SLFDIYQDIE- 613
+ +A+ G+R + N + +D+ + + +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 614 -NC--PPQ------LINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCK-KRSK 663
N P L+N ++ V+ G +L+ + + K K
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVS-------------GPPQSLYGL--NLTLRKAKAPS 400
Query: 664 YVNVLKSPNTSKMSL--------------STYKTQAKHPI--DKTYKHIKL----LSMTS 703
++ + P S+ L S A I D ++ + +
Sbjct: 401 GLDQSRIPF-SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP- 458
Query: 704 IKKVYNVEDEAHDNDRQIFALRCRGSDEVIETTYSFNIIDDTLDKMSFLR---ELCRQAS 760
VY+ D D LR S +I + +D + L E Q
Sbjct: 459 ---VYDTFD-GSD-------LR----------VLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 761 AVYCINFD 768
A + ++F
Sbjct: 498 ATHILDFG 505
Score = 58.5 bits (141), Expect = 8e-09
Identities = 86/558 (15%), Positives = 147/558 (26%), Gaps = 232/558 (41%)
Query: 32 SIMQPSEETEEKDTEPGMPCQIC------VCSNVDQTET------FKKALASFNVPVVLV 79
+ +P+E D EP P ++ V S V+ ++ L F +
Sbjct: 40 ILPEPTEGFAADD-EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 80 EDPDYFVH---AKFDGP---IIIVTSEFTNNFLR--------FHKPPQSRIL-------- 117
D +H AK ++ T E N++ F K S +
Sbjct: 99 ND----IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 118 ---------GPT-------------------ALIEMSIKV-ENLSIPLRTRIRPLFCHSM 148
G T LI+ S + L +F +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFTQGL 213
Query: 149 QNIVICITGFRNKQET-------------MKLIDITKHMGGKLRKEMNYQVTHLIANCVS 195
I + LI + Q+ H +
Sbjct: 214 N-----ILEWLENPSNTPDKDYLLSIPISCPLIGVI-------------QLAHYVVTAK- 254
Query: 196 GEKYKYAMGFRVPVLTKEF---------VLSA--------WEKRYDVNFKADEPSFMNQY 238
+GF L +++A WE + KA F
Sbjct: 255 ------LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF---- 304
Query: 239 KLKLFQGAKV-NFFGFSEEDEEQLQELLLSNGGKPS--LS----SDEPLTTHVVVDDSKV 291
F G + + + L++ L +N G PS LS + E + +V
Sbjct: 305 ----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK----- 355
Query: 292 TCMPNVPCTSTYVVKARWFWMSIQNSECAD--------ESKYLFGKNFRTPDRAAKRKRL 343
T++++ + +S+ N A +S Y R AK
Sbjct: 356 --------TNSHLPAGKQVEISLVNG--AKNLVVSGPPQSLYGLNLTLR----KAKAPSG 401
Query: 344 MEVVEEPHSSPRKSRKKRTSDIDGTPRYSCGSLLDYTTSPDNFLATDESDVMIKGNSPRH 403
++ P S RK ++S + FL SP H
Sbjct: 402 LDQSRIPFSE----RK---------LKFS-----------NRFLPV---------ASPFH 428
Query: 404 QVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH-- 461
S+ L + + + L N N +++I P++DT
Sbjct: 429 ----------SHL---LVPASDL----INKDLVKNNVSFNAKDIQI------PVYDTFDG 465
Query: 462 KDLLKDLKYLEQNYSDSV 479
DL + S S+
Sbjct: 466 SDL--------RVLSGSI 475
Score = 45.4 bits (107), Expect = 8e-05
Identities = 53/322 (16%), Positives = 102/322 (31%), Gaps = 91/322 (28%)
Query: 549 RPVQ-RLGSI--SLLLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSL 605
RP+ GS+ LL+ + S+ + F + +
Sbjct: 7 RPLTLSHGSLEHVLLV---------PTASFFIASQLQE------QFNKILPEPTEG---- 47
Query: 606 FDIYQDIE-NCPPQLINSHRSFVLKCDVIELSNMLSHRGDCITLFL--FTDVVEVCKKRS 662
D E P +L+ +V ++E S + + L L F +
Sbjct: 48 --FAADDEPTTPAELVGKFLGYV--SSLVEPSK-VGQFDQVLNLCLTEFEN--------- 93
Query: 663 KYVNVLKSPN----TSKMSLSTYKTQAK-HPIDKTYKHIKLLSMTSIKKVYN--VEDEAH 715
L+ + +K+ T K + K Y ++++ K N +
Sbjct: 94 ---CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 716 DNDRQIFAL----RCRGS-----DEVIE--TTYSFNIIDDTLDKMS-FLRELCRQ---AS 760
+ + Q+ A+ G+ +E+ + TY ++ D + + L EL R A
Sbjct: 151 EGNAQLVAIFGGQ---GNTDDYFEELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAE 206
Query: 761 AVYCINFD--KFLEDIS-------LANAS-SFNIETHESSNSTLGRAIKFASKQV-GRTL 809
V+ + ++LE+ S L + S + +G I+ A V + L
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL---------IG-VIQLAHYVVTAKLL 256
Query: 810 SLNRTPSTLRKVMSSMKVRVAD 831
TP LR +
Sbjct: 257 GF--TPGELRSYLKGATGHSQG 276
Score = 43.9 bits (103), Expect = 2e-04
Identities = 58/392 (14%), Positives = 111/392 (28%), Gaps = 167/392 (42%)
Query: 315 QNSECADESKYLFGKNFRTPDRAAKRKR------LMEVVEE-P-----HSSPRKSRKKRT 362
+ S+ A + ++ +RA + ++++V P H K ++ R
Sbjct: 1637 KTSKAAQD---VW-------NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 363 SDIDGTPRYSCGSLLDYTTSPDNFLATDESDVMIKGNSPRHQVFKELCQTESNYVNVLRV 422
YS + + T D G ++FKE+ + ++Y
Sbjct: 1687 -------NYS---AMIFETIVD-------------GKLKTEKIFKEINEHSTSYT----- 1718
Query: 423 LIEHFKNPLEEKL----NTNECILNQAEMKIIFGDLCP-IFDTHKDLLKDLKYLEQNY-- 475
F++ + L T Q P + K +DLK +
Sbjct: 1719 ----FRSE-KGLLSATQFT------Q-----------PALTLMEKAAFEDLK--SKGLIP 1754
Query: 476 SDSV----SIGE----VFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLAFLKLCY 527
+D+ S+GE A V + ++ R +
Sbjct: 1755 ADATFAGHSLGEYAALA----SLA--DVMS-----IESLVEVVFY-----RGMTMQVAV- 1797
Query: 528 MNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEALDGIRT 587
RD E+ + + I P G ++ + EAL +
Sbjct: 1798 --PRD----ELGRSNYGMIAINP----GRVAASFSQ----------------EALQYV-- 1829
Query: 588 VMTFLNENKQRQDNQRSLFDI--YQDIENCPPQLINSHRSFVLKCDVIELSNMLSHRGDC 645
E ++ L +I Y N Q V + GD
Sbjct: 1830 -----VERVGKRTGW--LVEIVNY----NVENQQY-----------VA--A------GDL 1859
Query: 646 ITLFLFTDVVEVCKKRS-KYVNVLKSPNTSKM 676
L T+V+ K + + + KS + ++
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 35.4 bits (81), Expect = 0.091
Identities = 53/403 (13%), Positives = 114/403 (28%), Gaps = 172/403 (42%)
Query: 444 QAE-MKIIFG-DLCPIFDTHKDLLK--DLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPF 499
Q + M G DL +D+ D + + Y SI ++ V + P
Sbjct: 1627 QEQGM----GMDLYKTSKAAQDVWNRAD-NHFKDTYG--FSILDI-VIN-------NPVN 1671
Query: 500 INFFQDSNSLLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISL 559
+ + +E + + + + D G + +K
Sbjct: 1672 LTIHFGGEKGKRIREN------YSAMIFETIVD-GKLKTEK------------------- 1705
Query: 560 LLNDILKNTSKSSTDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFD----IYQDIENC 615
+ +I ++++ + +K L T T Q +L ++D+++
Sbjct: 1706 IFKEINEHSTSYTFRSEK--GLLS--ATQFT-----------QPALTLMEKAAFEDLKS- 1749
Query: 616 PPQLINSHRSFVLKCDVI-------ELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVL 668
++ D E + L+ D ++ +VEV R + V
Sbjct: 1750 ---------KGLIPADATFAGHSLGEYA-ALASLADVMS---IESLVEVVFYRGMTMQVA 1796
Query: 669 KSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVYNVEDEAHDNDRQIFALRCRG 728
P ++ S Y M +I N ++ A
Sbjct: 1797 -VPR-DELGRSNY------------------GMIAI------------NPGRVAA---SF 1821
Query: 729 SDEVIETTYSFNIIDDTLDKMSFLRELCRQASAVYCINFDKFLEDISLANASSFNIETHE 788
S E L+ + + +E + N +N+E
Sbjct: 1822 SQEA-------------------LQYVVERVGK----RTGWLVE---IVN---YNVE--- 1849
Query: 789 SSNSTLGRAIKFASKQV---GRTLSLNRTPSTLRKVMSSMKVR 828
++Q G +L+ T+ V++ +K++
Sbjct: 1850 -------------NQQYVAAGDLRALD----TVTNVLNFIKLQ 1875
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo
sapiens} PDB: 3ktf_A* 2wt8_A*
Length = 107
Score = 47.2 bits (112), Expect = 9e-07
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 148 MQNIVICI---TGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMG 204
++++V + + + + MG K+ K N QVTH+I + A
Sbjct: 8 LKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQK 67
Query: 205 FRVPVLTKEFVL---SAW----EKRYDV-NFKADEPSFM 235
V +++ +V +A E + N S +
Sbjct: 68 RGVKLVSVLWVEKCRTAGAHIDESLFPAANMNEHLSSLI 106
Score = 36.0 bits (83), Expect = 0.008
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 254 SEEDEEQLQELLLSNGGK--PSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFW 311
+E + L+ G K + + THV+ D + +V W
Sbjct: 23 TENYSKTFTTQLVDMGAKVSKTFNKQ---VTHVIFKDGYQSTWDKAQKRGVKLVSVLWVE 79
Query: 312 MSIQNSECADESKY 325
DES +
Sbjct: 80 KCRTAGAHIDESLF 93
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase,
nonhomologous END joining (NHEJ), DNA damage, DNA
repair, DNA replication, DNA synthesis; HET: DNA; NMR
{Homo sapiens}
Length = 106
Score = 42.7 bits (100), Expect = 3e-05
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 241 KLFQGAKVNFF--GFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDS-------KV 291
+ + + G E ++ ++ +GG+ + P TH+VVD+ ++
Sbjct: 10 EWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLC-PAQGPGVTHIVVDEGMDYERALRL 68
Query: 292 TCMPNVPCTSTYVVKARWFWMSIQNSECADESKYL 326
+P +P +VK+ W + +Q D + +
Sbjct: 69 LRLPQLP-PGAQLVKSAWLSLCLQERRLVDVAGFS 102
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein
interactions, DNA L III-alpha BRCT2 domain, DNA binding
protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A*
3qvg_B* 1cdz_A
Length = 104
Score = 42.2 bits (99), Expect = 5e-05
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGF-- 205
+ + G E +LI G+L MN +V +I ++ A+
Sbjct: 8 FEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENP 67
Query: 206 RVPVLTKEFVLSAWEKR 222
+ + ++ S EK+
Sbjct: 68 SLAFVRPRWIYSCNEKQ 84
Score = 37.2 bits (86), Expect = 0.003
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 242 LFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPC- 299
F+G +G F ++ +L + + G+ V+
Sbjct: 7 FFEGKHFFLYGEFPGDERRRLIRYVTAFNGELE-DYMNERVQFVITAQEWDPNFEEALME 65
Query: 300 -TSTYVVKARWFWMSIQNSECADESKYL 326
S V+ RW + + + Y
Sbjct: 66 NPSLAFVRPRWIYSCNEKQKLLPHQLYG 93
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker
complexed with non-BRCT protein, three-helix bundle,
parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4
c.15.1.4 PDB: 1gzh_B
Length = 259
Score = 44.0 bits (103), Expect = 1e-04
Identities = 44/253 (17%), Positives = 82/253 (32%), Gaps = 45/253 (17%)
Query: 109 HKP-PQSRIL--GPTALIEMSIKVENLSIPLRTRIRPLFCHSMQNIVICITGFRNKQETM 165
P P ++ L G L+ M+ + L+ + P + + I F NKQ T
Sbjct: 6 RGPLPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPF-NKQYTE 64
Query: 166 KLIDITKHMGGKLRKEMN------YQVTHLIAN-CVSGEKYKYAMGFRVPVLTKEFVLSA 218
+ + G + ++ N LIA+ KY + +P ++ +V +
Sbjct: 65 SQL---RAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDS 121
Query: 219 WEKRYDVNFK-----ADEPSFMNQY-----KLKLFQGAKVNFFGFSEEDEEQLQELLLSN 268
N++ A + + FQ KV +++ +L +L
Sbjct: 122 CHANQLQNYRNYLLPAGYSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMT 181
Query: 269 GG------KPSLSSDEPLTTH----VVVDDS------KVTCMPNVPCTSTYVVKARWFWM 312
GG S + ++ + VV D S K +P VV W
Sbjct: 182 GGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLP-----VVSQEWVIQ 236
Query: 313 SIQNSECADESKY 325
+ E ++
Sbjct: 237 CLIVGERIGFKQH 249
Score = 34.0 bits (77), Expect = 0.17
Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 16/104 (15%)
Query: 250 FFGFSEEDEEQLQELLLSNGGK-----PSLSSDEPLTTHVVVDDSKVT------CMPNVP 298
F +++ + L + G + ++ D T +P
Sbjct: 52 FLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIP 111
Query: 299 CTSTYVVKARWFWMSIQNSECADESKYLFGKNFRTPDRAAKRKR 342
C V W S ++ + YL + ++ +
Sbjct: 112 C-----VSHVWVHDSCHANQLQNYRNYLLPAGYSLEEQRILDWQ 150
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase,
coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Length = 264
Score = 40.3 bits (93), Expect = 0.002
Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 20/129 (15%)
Query: 216 LSAWEKRYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEE-DEEQLQELLLSNGGKPSL 274
L + + + S + ++ L LF +++ ++ + GGK +
Sbjct: 134 LYKSQLSLPPMGELEIDSEVRRFPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGK--I 191
Query: 275 SSDEPLTTHVVVDDSKVTCMPNVPCTST-----------------YVVKARWFWMSIQNS 317
+ + L +++ + + VV W SI +
Sbjct: 192 TDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVAPEWVDHSINEN 251
Query: 318 ECADESKYL 326
E +
Sbjct: 252 CQVPEEDFP 260
Score = 31.8 bits (71), Expect = 0.75
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 16/100 (16%)
Query: 241 KLFQGAKVNFF---------GFSEEDEEQLQELLLSNGGK----PSLSSDEPLTTHVVVD 287
+F G + F+ +L++ ++ +GGK L ++
Sbjct: 4 NIFAG--LLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISC 61
Query: 288 DSKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLF 327
+ C + ++ W I
Sbjct: 62 KTTTECKALIDRGYD-ILHPNWVLDCIAYKRLILIEPNYC 100
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein
interactions, XRCC1 domain, DNA binding protein; HET:
DNA MSE; 1.65A {Homo sapiens} PDB: 3pc8_C* 1imo_A*
1in1_A* 3qvg_A*
Length = 88
Score = 35.4 bits (81), Expect = 0.007
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 229 ADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDD 288
ADE + L +F G ++ + S D +L+ ++ G D THV+
Sbjct: 3 ADETLSQTKVLLDIFTGVRL-YLPPSTPDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSR 61
Query: 289 SKVTCMPNVPCTSTYVVKARWFWMSIQNSE 318
K + V W W I+
Sbjct: 62 DKN--------PAAQQVSPEWIWACIRKRR 83
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 33.0 bits (74), Expect = 0.38
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 221 KRYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELL----LSNGGKPSLSS 276
R + A+ + + K K+ +G ++ F G + L + +S G + L
Sbjct: 331 SRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF 390
Query: 277 DEPLTTHVVVDD---SKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYL 326
P TH++ KV V + VVK W S+ + ES YL
Sbjct: 391 SVP-PTHLIAAKIRTEKVK--KAVSMGNIKVVKLNWLTESLSQWKRLPESDYL 440
Score = 31.1 bits (69), Expect = 1.4
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 124 EMSIKVENLSIP-LRTRIRPLFCHSMQNIVICITGFR---NKQETMKLIDITKHMGGKLR 179
++S + N + I + ++ + +G + + G ++
Sbjct: 328 DISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVV 387
Query: 180 KEMNYQVTHLIANCVSGEKYKYAM 203
+ + THLIA + EK K A+
Sbjct: 388 LDFSVPPTHLIAAKIRTEKVKKAV 411
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing,
coiled coil, DNA damage, DNA recombination, isopeptide
bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB:
2e2w_A*
Length = 263
Score = 32.6 bits (73), Expect = 0.41
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 16/112 (14%)
Query: 230 DEPSFMNQYKLKLFQGAKVNFFGFSEEDE----------EQLQELLLSNGGKPSLSSDEP 279
+ + L +F+ V ++ ++ L +G K E
Sbjct: 152 EYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEG 211
Query: 280 LTTHVVVDD-----SKVTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYL 326
++ HV++ + + ++K W SI E +E++YL
Sbjct: 212 VS-HVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYL 262
Score = 31.4 bits (70), Expect = 1.1
Identities = 28/228 (12%), Positives = 71/228 (31%), Gaps = 19/228 (8%)
Query: 149 QNIVICI-TGFRN--KQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGF 205
+++ C+ +G + K + I GG + + +IA + +
Sbjct: 12 EDVEFCVMSGTDSQPKPDLENRI---AEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSN 68
Query: 206 RVPVLTKEFVLSAWEKRYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELL 265
+ V+ ++L ++ + V + +P FM + + + +
Sbjct: 69 KHDVVKPAWLLECFKTKSFVPW---QPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQ 125
Query: 266 LSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWM----SIQNSECAD 321
L +S+E + + + + C+ + + ++ I + +
Sbjct: 126 LKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKN 185
Query: 322 ESKYLFGKNFRTPDRAAKRKRLME------VVEEPHSSPRKSRKKRTS 363
E L K AK + ++ E HS + R +
Sbjct: 186 EGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRT 233
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, ALF4, transition state analog,
cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Length = 372
Score = 32.9 bits (74), Expect = 0.45
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 16/117 (13%)
Query: 220 EKRYDVNFKADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELL----LSNGGKPSLS 275
R + A+ + + K K+ +G ++ F G + L + +S G + L
Sbjct: 260 SSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLD 319
Query: 276 SDEPLTTHVVVDD---SKV---TCMPNVPCTSTYVVKARWFWMSIQNSECADESKYL 326
P TH++ KV M N+ VVK W S+ + ES YL
Sbjct: 320 FSVP-PTHLIAAKIRTEKVKKAVSMGNIK-----VVKLNWLTESLSQWKRLPESDYL 370
Score = 31.3 bits (70), Expect = 1.4
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 148 MQNIVICITGFR---NKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAM 203
++ + +G + + G ++ + + THLIA + EK K A+
Sbjct: 283 LKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAV 341
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome
biogenesis, DNA damage, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 30.6 bits (69), Expect = 0.51
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGK----------PSLSSDEPLTTHVVVDDSK 290
KLF+G K FF E E L ++ S GG+ + + TH +VD
Sbjct: 11 KLFEGLK--FFLNREVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPG 68
Query: 291 VTCMPNVPCTSTYVVKARWFWMSIQNSECADESKYL 326
V+ +W + S+ ++Y
Sbjct: 69 ----QQTSVIGRCYVQPQWVFDSVNARLLLPVAEYF 100
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural
genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Length = 113
Score = 29.1 bits (65), Expect = 2.0
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 149 QNIVICITGF--RNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCV----SGEKYKYA 202
N+ I G RNK E +I + +GGKL N + + I+ +K +
Sbjct: 12 SNMKILTLGKLSRNKDEVKAMI---EKLGGKLTGTAN-KASLCISTKKEVEKMNKKMEEV 67
Query: 203 MGFRVPVLTKEFVLSA 218
+ V++++F+
Sbjct: 68 KEANIRVVSEDFLQDV 83
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel
beta-strands and 3 alpha-helices, structural genomics,
PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB:
3erj_A
Length = 123
Score = 29.4 bits (66), Expect = 2.1
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 16 PGGTTAIQSEPMEVDCSIMQPSEETEEKDTEPGMPCQICVCSNVDQTETFKKALASFNVP 75
G A+Q + ++ K + G + ++++ K S +
Sbjct: 16 SRGKLAVQVAHAAIIG-YLKSDSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLV 74
Query: 76 VVLVED 81
LV+D
Sbjct: 75 TGLVQD 80
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG,
PAR disease, chaperone, cysteine protease, PSI; 1.35A
{Geobacillus stearothermophilus} SCOP: c.23.16.2
Length = 224
Score = 30.0 bits (68), Expect = 2.7
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 14/61 (22%)
Query: 242 LFQGAKVNFFGFSEEDEEQ----------LQELLLSNGGKPSLSSDEPLTTHVVVDDSKV 291
+ +G V F++E+E + L+ L G T V D + +
Sbjct: 146 IVKGKTVT--SFTDEEEREVGLDVHMPFLLESTLRLRGAN--FVRGGKWTDFSVRDGNLI 201
Query: 292 T 292
T
Sbjct: 202 T 202
>3n7t_A Macrophage binding protein; seattle structural genomics center for
infectious disease, S macrophage, pathogenic fungus,
coccidioidomycosis; 2.10A {Coccidioides immitis}
Length = 247
Score = 30.0 bits (67), Expect = 3.0
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 242 LFQGAKVNFFGFSEEDEEQ--------------LQELLLSNGGKPSLSSDEPLTTHVVVD 287
+ + V GF+ + E + ++ + + ++P VD
Sbjct: 162 VIKDKTVT--GFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYV-PPEDPWDDFCKVD 218
Query: 288 DSKVT 292
VT
Sbjct: 219 GRIVT 223
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 30.0 bits (67), Expect = 3.1
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 59 VDQTETFKKALASFNVPVVLVEDP 82
+ QT L + + L D
Sbjct: 228 LRQTNCLISCLQDYQLSFKLYLDD 251
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 5.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 817 TLRKVMSSMKVRVADT 832
L+K+ +S+K+ D+
Sbjct: 21 ALKKLQASLKLYADDS 36
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase,
[4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM
MD0; 1.50A {Methanosarcina barkeri}
Length = 350
Score = 28.8 bits (65), Expect = 7.5
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 431 LEEKLNTNECILNQAEMKIIFGDLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKH 488
+ ++N Q + G L + + + + L+ + N D V + F+
Sbjct: 187 FDGRVNARR-FAKQQGYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVM-TFLPQ 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.388
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,113,641
Number of extensions: 722139
Number of successful extensions: 1753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1581
Number of HSP's successfully gapped: 93
Length of query: 832
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 730
Effective length of database: 3,853,851
Effective search space: 2813311230
Effective search space used: 2813311230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)