RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2293
(832 letters)
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 136 bits (343), Expect = 4e-37
Identities = 35/214 (16%), Positives = 80/214 (37%), Gaps = 14/214 (6%)
Query: 393 DVMIKGNSPRHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFG 452
D S + V + + +TE+ Y L+ ++ + PL+ L+ A + + G
Sbjct: 5 DTTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQT-----SEKLSSANISYLMG 59
Query: 453 DLCPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKE 512
+L I + L++ L+ + +G F+ K +Y + + ++L E
Sbjct: 60 NLEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTE 119
Query: 513 KEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSS 572
+ + G L L +P RL LL ++ ++
Sbjct: 120 HSEELGE---------FMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYH 170
Query: 573 TDHQKLSEALDGIRTVMTFLNENKQRQDNQRSLF 606
TD Q + +++ + + E ++R++ + +
Sbjct: 171 TDRQDIQKSMAAFKNLSAQCQEVRKRKELELQIL 204
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 136 bits (342), Expect = 9e-37
Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE++++ LRVL F +++ E ++ + E+ +F +L + + H
Sbjct: 22 RQEVINELFVTEASHLRTLRVLDLIFYQRMKK-----ENLMPREELARLFPNLPELIEIH 76
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKEK-EK 515
+ +K L + I ++ + ++V F ++ + L+K K K
Sbjct: 77 NSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRK 136
Query: 516 NSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDH 575
SRF F++ + P+ + L DL+I +QRL LLL I+K+T +++H
Sbjct: 137 ESRFQLFMQEAESH------PQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 190
Query: 576 QKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIE 613
+KL A D R ++ ++NE ++ +N+ L + ++
Sbjct: 191 EKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD 228
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 133 bits (336), Expect = 3e-36
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R EL TE NYVN L+++ E F+ PL E +L + E+ +IF + + +
Sbjct: 10 RQGYIHELIVTEENYVNDLQLVTEIFQKPLMESE-----LLTEKEVAMIFVNWKELIMCN 64
Query: 462 KDLLKDLKYLEQNYSDSV---SIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSR 518
LLK L+ ++ + + IG++ + + + ++ ++
Sbjct: 65 IKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPD 124
Query: 519 FLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKL 578
F F+K M+ P L +++P+QR+ L++ +IL+NT ++ DH L
Sbjct: 125 FKEFVKRLEMD------PRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHL 178
Query: 579 SEALDGIRTVMTFLNENKQRQDNQRSLFDI 608
AL+ + + +NE + ++N L I
Sbjct: 179 KHALEKAEELCSQVNEGVREKENSDRLEWI 208
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 130 bits (328), Expect = 6e-35
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 20/221 (9%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +V EL TE +V L+VL + F + E IL+ +E++ IF +L I H
Sbjct: 23 RQEVINELFYTERAHVRTLKVLDQVFYQRVSR-----EGILSPSELRKIFSNLEDILQLH 77
Query: 462 KDLLKDLKYLEQNYSDSV--SIGEVFVKHCTA-----FKKVYPPFINFFQDSNSLLKE-K 513
L + +K + + SV IGE + + K F + + ++K +
Sbjct: 78 IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQ 137
Query: 514 EKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSST 573
+K+SRF F++ N P + L D++ +QRL LLL++I K T + T
Sbjct: 138 KKDSRFQTFVQDAESN------PLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPT 190
Query: 574 DHQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDIYQDIEN 614
+ +K+ +A D R ++ F+N+ + +N++ L D + ++
Sbjct: 191 EREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDT 231
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 126 bits (318), Expect = 8e-34
Identities = 49/200 (24%), Positives = 98/200 (49%), Gaps = 12/200 (6%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R V E+ TE +Y+ L+ + E + ++ + + + ++K+IFG++ I+
Sbjct: 15 RANVINEIMSTERHYIKHLKDICEGYLKQCRKRRD----MFSDEQLKVIFGNIEDIYRFQ 70
Query: 462 KDLLKDL-KYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFL 520
++DL K + IG F++H F +Y + N D+ L + K+SR+
Sbjct: 71 MGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFW-IYSEYCNNHLDACMELSKLMKDSRYQ 129
Query: 521 AFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSE 580
F + C + L ++ + L+ PVQ++ L L ++LK T++ +D++ ++
Sbjct: 130 HFFEACRL------LQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAA 183
Query: 581 ALDGIRTVMTFLNENKQRQD 600
AL +R V +NE K+R +
Sbjct: 184 ALAVMRNVTQQINERKRRLE 203
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 123 bits (310), Expect = 1e-32
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 26/212 (12%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
+V EL +TE YV L L+E + PL++ E L Q E+ ++FG+L + +
Sbjct: 8 LRKVICELLETERTYVKDLNCLMERYLKPLQK-----ETFLTQDELDVLFGNLTEMVEFQ 62
Query: 462 KDLLKDLKYLEQNYSDS-------------VSIGEVFVKHCTAFKKVYPPFINFFQDSNS 508
+ LK L+ + D S+G F+ + FK +Y F
Sbjct: 63 VEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFK-LYSAFCASHTKVPK 121
Query: 509 LLKEKEKNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNT 568
+L + + ++ F AFL + TL LI+P+QR+ LLL ++ T
Sbjct: 122 VLVKAKTDTAFKAFLDAQNPRQQH-------SSTLESYLIKPIQRVLKYPLLLRELFALT 174
Query: 569 SKSSTDHQKLSEALDGIRTVMTFLNENKQRQD 600
S +H L A+ + V + +NE ++ +
Sbjct: 175 DAESEEHYHLDVAIKTMNKVASHINEMQKIHE 206
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 115 bits (290), Expect = 4e-30
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 17/196 (8%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
R +E+ QTE Y + L + +HF PL+ L +M+ IF ++ +F H
Sbjct: 28 RCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR-------FLKPQDMETIFVNIEELFSVH 80
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKE-KEKNSRFL 520
LK+LK + ++ +VF+K+ F VY + + + ++ L +
Sbjct: 81 THFLKELKDALAG-PGATTLYQVFIKYKERF-LVYGRYCSQVESASKHLDQVATAREDVQ 138
Query: 521 AFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSE 580
L+ C + TL DLL+ P+QR+ LLL +++K+T + +T+ + L
Sbjct: 139 MKLEECSQR------ANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRL 191
Query: 581 ALDGIRTVMTFLNENK 596
ALD +R + +NE K
Sbjct: 192 ALDAMRDLAQCVNEVK 207
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 114 bits (287), Expect = 1e-29
Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 18/214 (8%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
+ + K Y+ L ++I+ F+ P N + + +++ IF + I +
Sbjct: 4 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVS----NSKLFSANDVENIFSRIVDIHELS 59
Query: 462 KDLLKDLKY---LEQNYSDSVSIGEVFVKHCTAFK-KVYPPFINFFQDSNS---LLKEKE 514
LL ++ + S +G F Y + L +
Sbjct: 60 VKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 515 KNSRFLAFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTD 574
K L + G E + LP LL+ PV LL L+ S+ D
Sbjct: 120 KPGAALYLQSIG------EGFKEAVQYVLPRLLLAPVYHCLHYFELL-KQLEEKSEDQED 172
Query: 575 HQKLSEALDGIRTVMTFLNENKQRQDNQRSLFDI 608
+ L +A+ + V + + + + +R L +
Sbjct: 173 KECLKQAITALLNVQSGMEKICSKSLAKRRLSES 206
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 112 bits (281), Expect = 5e-29
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 16/196 (8%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNEC-ILNQAEMKIIFGDLCPIFDT 460
R V EL TE YV L ++E + ++ L + Q + I+FG++ I+
Sbjct: 10 RRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHF 69
Query: 461 HKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFL 520
H + L+ LE +G F++ F ++Y + S SL ++ F
Sbjct: 70 HNRI--FLRELESCIDCPELVGRCFLERMEEF-QIYEKYCQNKPRSESLWRQCSDCPFFQ 126
Query: 521 AFLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSE 580
K L +L L++PVQR+ LLL ++LK + K + L E
Sbjct: 127 ECQKKLDHKL-----------SLDSYLLKPVQRITKYQLLLKEMLKYS-KHCEGAEDLQE 174
Query: 581 ALDGIRTVMTFLNENK 596
AL I ++ +N++
Sbjct: 175 ALSSILGILKAVNDSM 190
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 107 bits (268), Expect = 2e-27
Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 19/194 (9%)
Query: 402 RHQVFKELCQTESNYVNVLRVLIEHFKNPLEEKLNTNECILNQAEMKIIFGDLCPIFDTH 461
+ + EL QTE YV LR ++ + + + + + IIFG++ I++ H
Sbjct: 4 KEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVN-KELIIFGNMQEIYEFH 62
Query: 462 KDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSLLKEKEKNSRFLA 521
++ LK LE+ +G FV F+ +Y + DS L+ E +
Sbjct: 63 NNI--FLKELEKYEQLPEDVGHCFVTWADKFQ-MYVTYCKNKPDSTQLILEHAGS----- 114
Query: 522 FLKLCYMNLRDLGLPEIDKQTLPDLLIRPVQRLGSISLLLNDILKNTSKSSTDHQKLSEA 581
++ ++ LI+PVQR+ LLL ++L + ++ +
Sbjct: 115 -------YFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEE---GKGEIKDG 164
Query: 582 LDGIRTVMTFLNEN 595
L+ + +V N+
Sbjct: 165 LEVMLSVPKRANDA 178
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein,
BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 44.3 bits (104), Expect = 3e-06
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 151 IVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIAN------CVSGEKYKYAMG 204
+ + ++G +E M + + L + + TH++ C KY +
Sbjct: 2 MSMVVSGL-TPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIA 60
Query: 205 FRVPVLTKEFVLSAWEKR 222
V++ +V + ++R
Sbjct: 61 GGKWVVSYFWVTQSIKER 78
Score = 40.1 bits (93), Expect = 1e-04
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 13/103 (12%)
Query: 252 GFSEEDEEQLQELLLSNGGK--PSLSSDEPLTTHVVVDDSKVTCMPNVP------CTSTY 303
G + E+ + + + ++ + TTHVV+ +
Sbjct: 8 GLTPEEFMLVYKFARKHHITLTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKW 64
Query: 304 VVKARWFWMSIQNSECADESKYLFGKNFRTPDR--AAKRKRLM 344
VV W SI+ + +E + + KR R
Sbjct: 65 VVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARES 107
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 43.9 bits (103), Expect = 4e-06
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 241 KLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPC 299
FQG +G F ++ +L + + G+ + V+
Sbjct: 4 DFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSD-RVQFVITAQEWDPSFEEALM 62
Query: 300 --TSTYVVKARWFWMSIQNSECADESKYL 326
S V+ RW + + + Y
Sbjct: 63 DNPSLAFVRPRWIYSCNEKQKLLPHQLYG 91
Score = 41.2 bits (96), Expect = 4e-05
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGF-- 205
Q + G E KLI G+L M+ +V +I ++ A+
Sbjct: 6 FQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMDNP 65
Query: 206 RVPVLTKEFVLSAWEKR 222
+ + ++ S EK+
Sbjct: 66 SLAFVRPRWIYSCNEKQ 82
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 42.6 bits (100), Expect = 8e-06
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 228 KADEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVD 287
ADE + L +F G ++ + S D +L+ ++ G D THV+
Sbjct: 2 SADETLCQTKVLLDIFTGVRL-YLPPSTPDFSRLRRYFVAFDGDLVQEFDMTSATHVLGS 60
Query: 288 DSKVTCMPNVPCTSTYVVKARWFWMSIQNSEC 319
K + V W W I+
Sbjct: 61 RDKN--------PAAQQVSPEWIWACIRKRRL 84
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein,
BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 42.1 bits (98), Expect = 2e-05
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 241 KLFQGAKVNFFG-FSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPC 299
K+F+G ++ +G F+ +QL+ ++ G T V V
Sbjct: 2 KIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVV-KELSSFTLGTGVHPIVVVQPDAWTE 60
Query: 300 TSTY----------VVKARWFWMSIQNSECADESKYLFGK 329
+ + VV W S+ +C + YL +
Sbjct: 61 DNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 100
Score = 31.7 bits (71), Expect = 0.088
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 141 RPLFCHSMQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNY----------QVTHLI 190
R +F + + IC G T +L + + G + KE++ V
Sbjct: 1 RKIF----RGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPD 56
Query: 191 ANCVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFK 228
A + PV+T+E+VL +
Sbjct: 57 AWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELD 94
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1,
TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 42.9 bits (100), Expect = 2e-05
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 241 KLFQGAKVNFFGFSEEDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCT 300
L G ++ GFS ++L+ L+ S GG +E THV+V D +
Sbjct: 39 DLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNED-VTHVIVGDYDDELKQFWNKS 97
Query: 301 ST--YVVKARWFWMSIQNSECADESKYLFGK 329
+ +VV A+W E Y+
Sbjct: 98 AHRPHVVGAKWLLECFSKGYMLSEEPYIHSG 128
Score = 40.9 bits (95), Expect = 1e-04
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKY--AMGF 205
+ I + GF ++ KL + GG ++N VTH+I E ++
Sbjct: 41 LDGCRIYLCGFSGRKLD-KLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAH 99
Query: 206 RVPVLTKEFVLSAWEKRYDVN 226
R V+ +++L + K Y ++
Sbjct: 100 RPHVVGAKWLLECFSKGYMLS 120
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus
thermophilus [TaxId: 274]}
Length = 92
Score = 38.2 bits (89), Expect = 3e-04
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 148 MQNIVICITGFRNKQETMKLIDITKHMGGKLRKEMNYQVTHLIANCVSGEKYKYAMGFRV 207
++ + ITG ++ ++ + + +G K+ ++ + ++L+ G K + A V
Sbjct: 8 LKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGV 66
Query: 208 PVLTKEFVLSAWEKR 222
P LT+E + E R
Sbjct: 67 PTLTEEELYRLLEAR 81
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 153
Score = 31.9 bits (72), Expect = 0.12
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 181 EMNYQVTHLIAN-CVSGEKYKYAMGFRVPVLTKEFVLSAWEKRYDVNFK 228
LIA+ KY + +P ++ +V + N++
Sbjct: 83 CNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYR 131
Score = 30.0 bits (67), Expect = 0.60
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 6/83 (7%)
Query: 250 FFGFSEEDEEQLQELLLSNGGKPSLSSDEPL-----TTHVVVDDSKVTC-MPNVPCTSTY 303
F +++ + L + G +E ++ D T +
Sbjct: 52 FLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIP 111
Query: 304 VVKARWFWMSIQNSECADESKYL 326
V W S ++ + YL
Sbjct: 112 CVSHVWVHDSCHANQLQNYRNYL 134
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Thermus thermophilus
[TaxId: 274]}
Length = 96
Score = 30.2 bits (68), Expect = 0.26
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 451 FGDL-CPIFDTHKDLLKDLKYLEQNYSDSVSIGEVFVKHCTAFKKVYPPFINFFQDSNSL 509
GD P+F K+L K + + Q D + + E + ++NF + +L
Sbjct: 33 PGDYGVPLFALAKELRKPPQAIAQELKDRLPLPEFVEEAVPV-----GGYLNFRLRTEAL 87
Query: 510 LKE--KEK 515
L+E + K
Sbjct: 88 LREALRPK 95
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 29.7 bits (66), Expect = 0.46
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 256 EDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQ 315
E + QE L + G K VVVD S C P + + + I
Sbjct: 6 ESKTAFQEALDAAGDKL-----------VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF 54
Query: 316 NSECADESKYLFGK 329
D+ + + +
Sbjct: 55 LEVDVDDCQDVASE 68
>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId:
1831]}
Length = 317
Score = 31.0 bits (68), Expect = 0.58
Identities = 12/68 (17%), Positives = 16/68 (23%), Gaps = 4/68 (5%)
Query: 44 DTEPGMPCQICVCSN---VDQTETFKKALASFNVPVVLVEDPDYFVHAKFDGPIIIVTSE 100
D P + D+ + L V V L P F H V+
Sbjct: 244 DLTGLPPTYLSTMELDPLRDEGIEYALRLLQAGVSVELHSFPGTF-HGSALVATAAVSER 302
Query: 101 FTNNFLRF 108
L
Sbjct: 303 GAAEALTA 310
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange
factor 12 {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 114
Score = 29.3 bits (65), Expect = 0.72
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 640 SHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLL 699
+ + L D++ + +K+ VL+ + S + K I + ++ +
Sbjct: 13 RDKTIDLYTLLLEDILVLLQKQ-DDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQV 71
Query: 700 SMTSIKKVYNVEDEAHDNDRQIFALRCRGSDE 731
+ T K ++ + DN QI+ L + E
Sbjct: 72 A-TDNKALFVI--SMSDNGAQIYELVAQTVSE 100
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 28.6 bits (63), Expect = 1.0
Identities = 7/74 (9%), Positives = 18/74 (24%), Gaps = 11/74 (14%)
Query: 256 EDEEQLQELLLSNGGKPSLSSDEPLTTHVVVDDSKVTCMPNVPCTSTYVVKARWFWMSIQ 315
+ Q L G + VV + C P + + + + ++
Sbjct: 7 GSDPDFQPELSGAGSRL-----------AVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVF 55
Query: 316 NSECADESKYLFGK 329
+ +
Sbjct: 56 LEVDVHQCQGTAAT 69
>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus
acidocaldarius [TaxId: 405212]}
Length = 308
Score = 29.1 bits (63), Expect = 2.2
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 48 GMPCQICVCSN----VDQTETFKKALASFNVPVVLVEDPDYFVHA 88
G+P + D + + +AL V V + D H
Sbjct: 238 GLPPAYIATAQYDPLRDVGKLYAEALNKAGVKVEIENFEDLI-HG 281
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 162
Score = 27.0 bits (59), Expect = 5.6
Identities = 11/113 (9%), Positives = 34/113 (30%), Gaps = 7/113 (6%)
Query: 601 NQRSLFDIYQDIENCP-PQLINSHRSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCK 659
N + + + +++ + ++ + + FLF + +CK
Sbjct: 1 NIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRV-FFLFDHQMVLCK 59
Query: 660 ----KRSKYVNVLKSPNTSKMSLSTYKTQAKHPIDKTYKHIKLLSMTSIKKVY 708
+R + K + + + + K+ L ++V+
Sbjct: 60 KDLIRRDILY-YKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVH 111
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 28.0 bits (62), Expect = 5.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 230 DEPSFMNQYKLKLFQGAKVNFFGFSEEDEEQLQELLLSNGGKP--SLSSDEPL 280
EPS M++ +L+ Q A FG + ED E + ++ +G + S+ D P+
Sbjct: 15 GEPSDMDKAELRRRQQA----FGLTMEDMELILHPMVEDGKEAIGSMGDDSPI 63
>d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1,
BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 250
Score = 27.5 bits (61), Expect = 6.4
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 292 TCMPNVPCTSTYVVKARWFWMSIQNSECADESKYLFGKNFRTPDRAAKRKRLMEVVEEPH 351
+C + C + V + W SIQ S+ + ++ N P A K E P+
Sbjct: 123 SCPTSEDCENNPVD-SFWKRASIQYSKDSSGVIHVM-LNGSEPTGAYPIKGFFADYEIPN 180
Query: 352 SSPRKSRKKRT---SDIDGTPRYSCGS 375
K + +I G SCG
Sbjct: 181 LQKEKITRIEIWVMHEIGGPNVESCGE 207
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 109
Score = 26.2 bits (57), Expect = 7.1
Identities = 9/68 (13%), Positives = 20/68 (29%)
Query: 624 RSFVLKCDVIELSNMLSHRGDCITLFLFTDVVEVCKKRSKYVNVLKSPNTSKMSLSTYKT 683
+ V D++E + + FL D + V + + + +
Sbjct: 2 QYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVN 61
Query: 684 QAKHPIDK 691
+P K
Sbjct: 62 VKDNPPMK 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.388
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,997,914
Number of extensions: 143903
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 37
Length of query: 832
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 739
Effective length of database: 1,130,706
Effective search space: 835591734
Effective search space used: 835591734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)