Query psy2295
Match_columns 276
No_of_seqs 211 out of 1408
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:03:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02668 Peptidase_C19L A subfa 100.0 8.8E-48 1.9E-52 339.9 21.7 210 63-276 1-212 (324)
2 cd02671 Peptidase_C19O A subfa 100.0 1.1E-44 2.4E-49 319.5 20.0 190 54-275 17-235 (332)
3 cd02663 Peptidase_C19G A subfa 100.0 8E-45 1.7E-49 317.8 17.3 179 63-275 1-202 (300)
4 cd02664 Peptidase_C19H A subfa 100.0 1.5E-44 3.2E-49 319.5 19.0 186 63-276 1-190 (327)
5 cd02660 Peptidase_C19D A subfa 100.0 1.4E-43 3.1E-48 313.7 19.3 202 62-275 1-230 (328)
6 KOG1865|consensus 100.0 1.8E-44 3.9E-49 321.3 13.4 210 54-276 101-322 (545)
7 cd02661 Peptidase_C19E A subfa 100.0 1.2E-42 2.6E-47 304.3 18.9 202 61-275 1-217 (304)
8 cd02658 Peptidase_C19B A subfa 100.0 4.9E-42 1.1E-46 301.8 19.7 194 63-275 1-229 (311)
9 cd02659 peptidase_C19C A subfa 100.0 8.4E-42 1.8E-46 303.1 19.9 199 60-275 1-206 (334)
10 cd02657 Peptidase_C19A A subfa 100.0 6.1E-41 1.3E-45 294.0 18.4 194 63-276 1-211 (305)
11 cd02667 Peptidase_C19K A subfa 100.0 1.2E-40 2.5E-45 288.6 15.6 157 63-275 1-163 (279)
12 COG5533 UBP5 Ubiquitin C-termi 100.0 4.5E-40 9.8E-45 273.0 13.2 212 55-273 65-317 (415)
13 cd02669 Peptidase_C19M A subfa 100.0 2E-39 4.4E-44 296.5 15.0 201 58-275 116-346 (440)
14 COG5560 UBP12 Ubiquitin C-term 100.0 4.9E-40 1.1E-44 294.5 8.8 152 59-218 263-448 (823)
15 KOG1866|consensus 100.0 5.3E-40 1.1E-44 298.3 1.2 247 13-275 46-301 (944)
16 KOG1863|consensus 100.0 6.4E-37 1.4E-41 303.6 11.5 250 9-275 117-372 (1093)
17 cd02666 Peptidase_C19J A subfa 100.0 5.7E-36 1.2E-40 264.0 12.1 183 61-270 1-216 (343)
18 cd02662 Peptidase_C19F A subfa 100.0 2.1E-35 4.5E-40 250.2 13.6 133 63-276 1-141 (240)
19 COG5077 Ubiquitin carboxyl-ter 100.0 1.9E-35 4.1E-40 269.4 5.3 203 53-275 185-392 (1089)
20 KOG0944|consensus 100.0 7.3E-34 1.6E-38 256.6 12.1 200 56-275 302-524 (763)
21 cd02674 Peptidase_C19R A subfa 100.0 3.6E-32 7.8E-37 229.0 11.3 131 63-275 1-139 (230)
22 KOG1868|consensus 100.0 5.3E-33 1.2E-37 258.1 6.4 211 57-276 297-555 (653)
23 COG5207 UBP14 Isopeptidase T [ 100.0 2E-30 4.4E-35 227.9 11.0 200 57-275 299-512 (749)
24 cd02665 Peptidase_C19I A subfa 100.0 2E-29 4.3E-34 209.6 9.6 116 152-276 21-143 (228)
25 cd02673 Peptidase_C19Q A subfa 100.0 5.3E-29 1.2E-33 210.6 11.1 122 148-275 28-160 (245)
26 PF00443 UCH: Ubiquitin carbox 100.0 4.5E-28 9.8E-33 207.2 14.4 158 61-276 1-173 (269)
27 KOG1873|consensus 100.0 1.3E-28 2.9E-33 224.8 8.9 157 54-216 198-364 (877)
28 KOG4598|consensus 99.9 5.7E-29 1.2E-33 225.4 4.0 176 57-275 83-269 (1203)
29 PF13423 UCH_1: Ubiquitin carb 99.9 2E-26 4.4E-31 201.1 16.5 194 62-275 1-215 (295)
30 KOG1867|consensus 99.9 1.4E-26 3.1E-31 211.4 10.4 206 58-275 158-389 (492)
31 cd02257 Peptidase_C19 Peptidas 99.9 6.9E-26 1.5E-30 191.3 12.5 140 63-275 1-153 (255)
32 cd02672 Peptidase_C19P A subfa 99.9 1.5E-24 3.3E-29 185.7 14.0 160 49-275 3-173 (268)
33 KOG1870|consensus 99.9 8.6E-25 1.9E-29 212.6 8.0 155 56-218 241-426 (842)
34 KOG1864|consensus 99.9 3.2E-22 7E-27 185.7 10.1 208 57-276 228-477 (587)
35 KOG2026|consensus 99.8 3.1E-20 6.6E-25 159.1 14.1 189 59-275 132-348 (442)
36 KOG1871|consensus 99.8 2.6E-20 5.6E-25 160.1 7.7 200 59-275 26-316 (420)
37 KOG1872|consensus 99.7 3.9E-18 8.5E-23 150.3 4.6 203 57-276 101-320 (473)
38 cd02670 Peptidase_C19N A subfa 99.5 9.5E-15 2.1E-19 122.8 7.4 86 152-275 22-112 (241)
39 KOG1275|consensus 99.4 1.6E-13 3.4E-18 129.0 7.7 210 41-271 479-732 (1118)
40 KOG1864|consensus 98.1 1.6E-06 3.4E-11 81.7 2.0 114 64-178 34-158 (587)
41 PF15499 Peptidase_C98: Ubiqui 97.0 0.0031 6.7E-08 52.7 7.1 74 181-269 120-198 (275)
42 PF05408 Peptidase_C28: Foot-a 94.8 0.013 2.8E-07 46.5 1.2 24 59-82 31-54 (193)
43 PF08715 Viral_protease: Papai 91.6 0.66 1.4E-05 40.9 6.8 71 59-165 100-175 (320)
44 PF14353 CpXC: CpXC protein 90.1 0.57 1.2E-05 35.4 4.5 49 195-251 1-49 (128)
45 KOG3556|consensus 78.8 3.9 8.5E-05 38.0 4.9 33 59-91 366-398 (724)
46 COG3478 Predicted nucleic-acid 75.4 2.8 6E-05 27.3 2.2 34 240-273 4-39 (68)
47 KOG2906|consensus 74.6 8.7 0.00019 27.4 4.7 72 190-262 16-87 (105)
48 PF09855 DUF2082: Nucleic-acid 64.8 6.5 0.00014 25.9 2.3 33 241-273 1-35 (64)
49 PF09723 Zn-ribbon_8: Zinc rib 62.1 16 0.00035 21.6 3.5 14 194-207 4-17 (42)
50 KOG1887|consensus 61.4 7 0.00015 38.4 2.8 114 152-270 548-690 (806)
51 smart00816 Amb_V_allergen Amb 54.7 3.8 8.2E-05 24.0 -0.1 16 7-22 25-44 (45)
52 PF08882 Acetone_carb_G: Aceto 54.6 13 0.00029 27.1 2.6 52 195-251 24-85 (112)
53 PF03367 zf-ZPR1: ZPR1 zinc-fi 53.4 22 0.00047 28.1 3.9 42 196-253 2-43 (161)
54 TIGR03037 anthran_nbaC 3-hydro 51.8 17 0.00038 28.5 3.1 44 197-248 116-159 (159)
55 PF13405 EF-hand_6: EF-hand do 50.2 23 0.00051 19.0 2.7 26 121-146 1-26 (31)
56 PRK03824 hypA hydrogenase nick 49.1 40 0.00088 25.7 4.7 50 191-249 66-116 (135)
57 PRK13264 3-hydroxyanthranilate 46.1 23 0.0005 28.4 3.0 47 197-251 122-168 (177)
58 PF00036 EF-hand_1: EF hand; 43.1 35 0.00076 18.3 2.6 26 121-146 1-26 (29)
59 COG4647 AcxC Acetone carboxyla 40.3 43 0.00093 25.2 3.4 94 154-251 30-131 (165)
60 PF13465 zf-H2C2_2: Zinc-finge 39.6 15 0.00032 19.2 0.7 13 237-249 11-23 (26)
61 TIGR00310 ZPR1_znf ZPR1 zinc f 39.2 23 0.0005 28.9 2.1 41 196-252 1-42 (192)
62 smart00709 Zpr1 Duplicated dom 36.6 30 0.00066 27.3 2.4 39 197-251 2-40 (160)
63 KOG1867|consensus 36.6 24 0.00053 33.2 2.1 34 57-90 73-106 (492)
64 PF13202 EF-hand_5: EF hand; P 36.5 52 0.0011 16.9 2.5 23 122-144 1-23 (25)
65 PF03913 Amb_V_allergen: Amb V 35.6 4.5 9.8E-05 23.5 -1.8 15 8-22 25-43 (44)
66 TIGR00340 zpr1_rel ZPR1-relate 34.1 48 0.001 26.3 3.1 39 198-251 1-39 (163)
67 COG1779 C4-type Zn-finger prot 33.8 52 0.0011 26.8 3.3 46 191-252 10-55 (201)
68 PRK11032 hypothetical protein; 33.7 41 0.00089 26.5 2.6 35 189-250 116-152 (160)
69 PF12218 End_N_terminal: N ter 33.2 22 0.00048 23.1 0.9 24 253-276 30-53 (67)
70 KOG2463|consensus 33.0 61 0.0013 28.6 3.8 36 240-276 257-293 (376)
71 PF14690 zf-ISL3: zinc-finger 32.3 68 0.0015 19.0 3.0 34 241-274 3-44 (47)
72 PF13499 EF-hand_7: EF-hand do 30.9 74 0.0016 20.1 3.2 47 122-169 2-50 (66)
73 TIGR00373 conserved hypothetic 30.8 57 0.0012 25.6 3.1 28 196-249 110-137 (158)
74 PF07754 DUF1610: Domain of un 28.6 30 0.00065 17.9 0.7 9 240-248 16-24 (24)
75 smart00054 EFh EF-hand, calciu 28.1 60 0.0013 15.6 2.0 24 122-145 2-25 (29)
76 PRK06266 transcription initiat 24.9 81 0.0018 25.3 3.0 29 195-249 117-145 (178)
77 PF05191 ADK_lid: Adenylate ki 24.4 80 0.0017 18.0 2.1 15 230-248 15-29 (36)
78 PRK04023 DNA polymerase II lar 23.7 44 0.00094 34.2 1.5 18 240-257 663-680 (1121)
79 cd00052 EH Eps15 homology doma 21.6 1.2E+02 0.0026 18.9 2.9 12 152-163 48-59 (67)
80 PF12171 zf-C2H2_jaz: Zinc-fin 21.3 49 0.0011 17.1 0.7 10 240-249 1-10 (27)
81 PF00096 zf-C2H2: Zinc finger, 20.4 39 0.00084 16.5 0.2 9 241-249 1-9 (23)
No 1
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.8e-48 Score=339.89 Aligned_cols=210 Identities=59% Similarity=0.956 Sum_probs=186.0
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF 142 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~ 142 (276)
||.|+||||||||+||+|+++|+||++++.............+ ........+++.+|+.||.+|+.+....++|..|
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f 77 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMP---PDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGF 77 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCccccccccccc---ccCCcccchHHHHHHHHHHHHHhCCCceEChHHH
Confidence 9999999999999999999999999999987654321111000 0011123579999999999999998899999999
Q ss_pred HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--cc
Q psy2295 143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CK 220 (276)
Q Consensus 143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~~ 220 (276)
+.++++..++||||+||+..||+ .|++++....++...+++.++|.|++.+.++|..|+..+.+.|+|+.|+|+| ..
T Consensus 78 ~~~l~~~~~~QqDa~EFl~~lLd-~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~ 156 (324)
T cd02668 78 VKALGLDTGQQQDAQEFSKLFLS-LLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHK 156 (324)
T ss_pred HHHhCCCCccccCHHHHHHHHHH-HHHHHHhhccCCcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecccC
Confidence 99999999999999999999999 9999987655555678999999999999999999999999999999999999 68
Q ss_pred cHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 221 TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 221 sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
+|+++|+.|+.+|.++|+|+|.|++|++++.|.|+..|.++|+||+|||+||.||.
T Consensus 157 sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~ 212 (324)
T cd02668 157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDR 212 (324)
T ss_pred CHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeec
Confidence 99999999999999999999999999999999999999999999999999999973
No 2
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-44 Score=319.46 Aligned_cols=190 Identities=29% Similarity=0.517 Sum_probs=162.9
Q ss_pred ccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHH---HHh
Q psy2295 54 ELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFA---LMQ 130 (276)
Q Consensus 54 ~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~---~l~ 130 (276)
+++...+++||.|+||||||||+||+|+++|+||+.++...... ....+++.+|. .+.
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------------------~~~~~~q~~~~~l~~~~ 77 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------------------SSVEQLQSSFLLNPEKY 77 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------------------CcHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999997763110 11223333332 223
Q ss_pred cCCCcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCee
Q psy2295 131 HSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNET 205 (276)
Q Consensus 131 ~~~~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s 205 (276)
.+....+.|..|+..++ |..+.|||||||+..||+ .|++ ++.++|+|++.+.++|..|++.+
T Consensus 78 ~~~~~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd-~L~~------------~i~~~F~g~~~~~~~C~~C~~~s 144 (332)
T cd02671 78 NDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILG-NIQE------------LVEKDFQGQLVLRTRCLECETFT 144 (332)
T ss_pred hhcccccCHHHHHHHHHHhccccCCccccCHHHHHHHHHH-HHHH------------HHHhhhceEEEEEEEeCCCCCee
Confidence 33344567999999886 778999999999999999 8873 57889999999999999999999
Q ss_pred eeeecceeeeecc--c-------------------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCce
Q psy2295 206 DRSEIFYELVVNV--C-------------------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKV 264 (276)
Q Consensus 206 ~~~e~f~~l~l~i--~-------------------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~v 264 (276)
.+.|+|++|+|+| . .+|+++|+.|+++|.++|+|+|.|++|+.+++|+|+..|.++|+|
T Consensus 145 ~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~v 224 (332)
T cd02671 145 ERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEV 224 (332)
T ss_pred ceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCE
Confidence 9999999999999 2 489999999999999999999999999999999999999999999
Q ss_pred EEEEEeceeec
Q psy2295 265 LNLQLMRFVFD 275 (276)
Q Consensus 265 L~i~L~Rf~~d 275 (276)
|+|||+||.|+
T Consensus 225 L~i~LkRF~~~ 235 (332)
T cd02671 225 ITIHLKCFAAN 235 (332)
T ss_pred EEEEeeeeccc
Confidence 99999999975
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8e-45 Score=317.75 Aligned_cols=179 Identities=31% Similarity=0.643 Sum_probs=164.2
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC--CcccCcH
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--KLLVDPT 140 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~i~p~ 140 (276)
||.|+||||||||+||+|++ ..++.+|+.||..|+.+. ...++|.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~ 47 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------------------ENLLTCLKDLFESISEQKKRTGVISPK 47 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------------------HHHHHHHHHHHHHHHhCCCCCeeECHH
Confidence 99999999999999999998 147889999999998864 3469999
Q ss_pred HHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccC--------------CcchhhhhhhccceEEEEEEEeCCC
Q psy2295 141 DFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQS--------------LPHIKNFIKDYFSGEYVYVTKCFAC 201 (276)
Q Consensus 141 ~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~--------------~~~~~~~i~~~F~g~~~~~~~C~~C 201 (276)
.|+.+++ |..+.|||||||+..||+ .|++++.... .+...++|.++|+|++.+.++|..|
T Consensus 48 ~f~~~l~~~~~~f~~~~QqDA~EFl~~lLd-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C 126 (300)
T cd02663 48 KFITRLKRENELFDNYMHQDAHEFLNFLLN-EIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTC 126 (300)
T ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHHH-HHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCC
Confidence 9999997 788999999999999999 9999886432 1234578999999999999999999
Q ss_pred CCeeeeeecceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 202 GNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 202 ~~~s~~~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
++.+.+.|+|+.|+|+| ..+|+++|+.|+++|.++|+|+|.|++|++++.|+|+..|.++|+||+|||+||.||
T Consensus 127 ~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~ 202 (300)
T cd02663 127 ETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYD 202 (300)
T ss_pred CCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEee
Confidence 99999999999999999 789999999999999999999999999999999999999999999999999999997
No 4
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-44 Score=319.47 Aligned_cols=186 Identities=32% Similarity=0.615 Sum_probs=168.5
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHH-
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTD- 141 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~- 141 (276)
||.|+||||||||+||+|+++|+||+++++........ ...+..+|+.+|..|..+.+.++.|..
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~--------------~~~~~~~L~~lf~~l~~~~~~~~~~~~~ 66 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGD--------------SQSVMKKLQLLQAHLMHTQRRAEAPPDY 66 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCC--------------cchHHHHHHHHHHHHhhcCCcccCCHHH
Confidence 89999999999999999999999999999986542110 245788999999999888777888876
Q ss_pred HHHHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc
Q psy2295 142 FVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV 218 (276)
Q Consensus 142 ~~~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 218 (276)
++.... |..+.|||||||+..||+ .|+ ++|.++|+|++.+.++|..|+.++.+.|+|..|+|+|
T Consensus 67 ~l~~~~~~~f~~~~QqDa~EFl~~lLd-~l~------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i 133 (327)
T cd02664 67 FLEASRPPWFTPGSQQDCSEYLRYLLD-RLH------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSF 133 (327)
T ss_pred HHHHhcccccCCCCcCCHHHHHHHHHH-HHH------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCC
Confidence 666554 788999999999999999 998 3688999999999999999999999999999999998
Q ss_pred cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 219 CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 219 ~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
. +|+++|+.|+++|.++|+|+|+|++|+++++|+|+..|.++|+||+|||+||.||.
T Consensus 134 ~-sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~ 190 (327)
T cd02664 134 P-SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQ 190 (327)
T ss_pred C-CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEcc
Confidence 6 89999999999999999999999999999999999999999999999999999984
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-43 Score=313.69 Aligned_cols=202 Identities=27% Similarity=0.425 Sum_probs=175.1
Q ss_pred ccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhc-CCCcccCcH
Q psy2295 62 IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH-SNKLLVDPT 140 (276)
Q Consensus 62 ~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~-~~~~~i~p~ 140 (276)
+||.|+||||||||+||+|+++|+||++++.......... .....++.++|++||..|+. .....+.|.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~----------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 70 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLS----------CSPNSCLSCAMDEIFQEFYYSGDRSPYGPI 70 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccccc----------CCccccHHHHHHHHHHHHhcCCCCCCcCHH
Confidence 6999999999999999999999999999998643321000 01135799999999999954 455678999
Q ss_pred HHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCC-----cchhhhhhhccceEEEEEEEeCCCCCeeeeeec
Q psy2295 141 DFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL-----PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEI 210 (276)
Q Consensus 141 ~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~-----~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~ 210 (276)
.|+.+++ |.++.|||||||+..||+ .|+++...... ....++|.++|+|++.+.++|..|++.+.+.|+
T Consensus 71 ~~l~~~~~~~~~f~~~~QqDa~Efl~~ll~-~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~ 149 (328)
T cd02660 71 NLLYLSWKHSRNLAGYSQQDAHEFFQFLLD-QLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDP 149 (328)
T ss_pred HHHHHHHhhchhhcccccccHHHHHHHHHH-HHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecc
Confidence 9998874 778899999999999999 99998865432 223468999999999999999999999999999
Q ss_pred ceeeeecc--c---------------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEecee
Q psy2295 211 FYELVVNV--C---------------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFV 273 (276)
Q Consensus 211 f~~l~l~i--~---------------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~ 273 (276)
|+.|+|++ . .+|+++|+.|+++|.+++.| |.|++|+.++.+.++..|.++|++|+|||+||.
T Consensus 150 f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~ 228 (328)
T cd02660 150 FLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFE 228 (328)
T ss_pred cceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEE
Confidence 99999999 2 89999999999999998877 999999999999999999999999999999999
Q ss_pred ec
Q psy2295 274 FD 275 (276)
Q Consensus 274 ~d 275 (276)
|+
T Consensus 229 ~~ 230 (328)
T cd02660 229 HS 230 (328)
T ss_pred ec
Confidence 97
No 6
>KOG1865|consensus
Probab=100.00 E-value=1.8e-44 Score=321.31 Aligned_cols=210 Identities=24% Similarity=0.435 Sum_probs=186.6
Q ss_pred ccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC
Q psy2295 54 ELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN 133 (276)
Q Consensus 54 ~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~ 133 (276)
+.|....++||.|+|||||+|||||||.++|++.++|+...+....- ....+++++++........+.
T Consensus 101 ~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~------------~~~~C~lc~~q~hi~~A~~~~ 168 (545)
T KOG1865|consen 101 SDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH------------RAKFCMLCTFQAHITRALHNP 168 (545)
T ss_pred ccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc------------ccCeeeehHHHHHHHHHhcCC
Confidence 34456789999999999999999999999999999999886664431 114789999999887776777
Q ss_pred CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhc-----cCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295 134 KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRV-----QSLPHIKNFIKDYFSGEYVYVTKCFACGN 203 (276)
Q Consensus 134 ~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~-----~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 203 (276)
+.+++|..|+..|+ |..|.|+||||||.+++| .++...-. .......++|+++|+|.+++.++|..|.+
T Consensus 169 g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd-~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~ 247 (545)
T KOG1865|consen 169 GHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVD-AMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKG 247 (545)
T ss_pred CCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHH-HHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCC
Confidence 67999999999886 899999999999999999 99988631 11224568999999999999999999999
Q ss_pred eeeeeecceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 204 ETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 204 ~s~~~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
++.++|+.++|+|.| ..+|+++|+.|.++|.++|+|+|+|++|+++++|.|+.+|.++|.||+||||||++.|
T Consensus 248 vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~ 322 (545)
T KOG1865|consen 248 VSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGT 322 (545)
T ss_pred cccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccCc
Confidence 999999999999999 7999999999999999999999999999999999999999999999999999998753
No 7
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-42 Score=304.32 Aligned_cols=202 Identities=26% Similarity=0.450 Sum_probs=178.5
Q ss_pred cccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcH
Q psy2295 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPT 140 (276)
Q Consensus 61 ~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~ 140 (276)
|+||.|+||||||||+||+|+++|+|+++++......... ....++.++|+.++..|..+....+.|.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~p~ 68 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC------------NEGFCMMCALEAHVERALASSGPGSAPR 68 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc------------CCcchHHHHHHHHHHHHHhCCCCccChH
Confidence 6899999999999999999999999999998754432110 0125789999999999998888899999
Q ss_pred HHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCC--------cchhhhhhhccceEEEEEEEeCCCCCeeee
Q psy2295 141 DFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL--------PHIKNFIKDYFSGEYVYVTKCFACGNETDR 207 (276)
Q Consensus 141 ~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~--------~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~ 207 (276)
.|..+++ |..+.||||+||+.+||+ .|+++...... ....+++.++|+|++.+.++|..|+..+.+
T Consensus 69 ~~~~~l~~~~~~f~~~~qqDa~Efl~~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~ 147 (304)
T cd02661 69 IFSSNLKQISKHFRIGRQEDAHEFLRYLLD-AMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNT 147 (304)
T ss_pred HHHHHHHHHHHhhcCcchhhHHHHHHHHHH-HHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCc
Confidence 9998875 888999999999999999 99987543221 123578999999999999999999999999
Q ss_pred eecceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 208 SEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 208 ~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
.++|+.|+|++ ..+|+++|+.++++|.++|+++|.|++|++++.+.++..|.++|++|+|||+||.|+
T Consensus 148 ~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~ 217 (304)
T cd02661 148 YDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF 217 (304)
T ss_pred cccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC
Confidence 99999999999 579999999999999999999999999999999999999999999999999999987
No 8
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.9e-42 Score=301.78 Aligned_cols=194 Identities=24% Similarity=0.348 Sum_probs=165.6
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC---------
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--------- 133 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--------- 133 (276)
||.|+||||||||+||+|+++|+||++++.......... .....++.++|++||..|+...
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~----------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 70 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDV----------VDPANDLNCQLIKLADGLLSGRYSKPASLKS 70 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCc----------CCccccHHHHHHHHHHHhcCCCcCCCccccc
Confidence 999999999999999999999999999987432211100 0012579999999999987642
Q ss_pred -----CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295 134 -----KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGN 203 (276)
Q Consensus 134 -----~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 203 (276)
...++|..|+.+++ |..+.|||||||+.+||+ .|++++.... ...+.++|.|.+.+.++|..|+.
T Consensus 71 ~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~-~l~~~~~~~~----~~~~~~~f~~~~~~~i~C~~C~~ 145 (311)
T cd02658 71 ENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLID-KLDRESFKNL----GLNPNDLFKFMIEDRLECLSCKK 145 (311)
T ss_pred cccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHH-HHHHhhcccc----cCCchhheEEEeeEEEEcCCCCC
Confidence 34689999999986 788999999999999999 9999875321 24578999999999999999999
Q ss_pred eeeeeecceeeeecc--c--------------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEE
Q psy2295 204 ETDRSEIFYELVVNV--C--------------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNL 267 (276)
Q Consensus 204 ~s~~~e~f~~l~l~i--~--------------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i 267 (276)
.+.+.++|..|+|++ . .+|+++|+.|+.+|.++ ++|++|++++.|.|+.+|.++|+||+|
T Consensus 146 ~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii 221 (311)
T cd02658 146 VKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVI 221 (311)
T ss_pred EEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEE
Confidence 999999999999887 2 28999999999999998 689999999999999999999999999
Q ss_pred EEeceeec
Q psy2295 268 QLMRFVFD 275 (276)
Q Consensus 268 ~L~Rf~~d 275 (276)
||+||.|+
T Consensus 222 ~LkRF~~~ 229 (311)
T cd02658 222 NMKRFQLL 229 (311)
T ss_pred EeEEEEec
Confidence 99999995
No 9
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.4e-42 Score=303.13 Aligned_cols=199 Identities=40% Similarity=0.661 Sum_probs=173.4
Q ss_pred CcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCc
Q psy2295 60 EFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDP 139 (276)
Q Consensus 60 ~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p 139 (276)
|++||.|+||||||||+||+|+++|+|+++++........ .....+.++|+.||..|+.+....+.|
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~-------------~~~~~~~~~l~~lf~~~~~~~~~~~~~ 67 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDD-------------DDNKSVPLALQRLFLFLQLSESPVKTT 67 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccC-------------cccccHHHHHHHHHHHHHhCCccccCc
Confidence 6899999999999999999999999999999987322111 002468999999999999877666666
Q ss_pred HHHH--HHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceee
Q psy2295 140 TDFV--LTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYEL 214 (276)
Q Consensus 140 ~~~~--~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l 214 (276)
..+. ..+. +..+.||||+||+..||+ .|++++... ...+++.++|.|++...++|..|+..+...++|+.|
T Consensus 68 ~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~-~l~~~~~~~---~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l 143 (334)
T cd02659 68 ELTDKTRSFGWDSLNTFEQHDVQEFFRVLFD-KLEEKLKGT---GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDL 143 (334)
T ss_pred chhheeccCCCCCCCcccchhHHHHHHHHHH-HHHHHhccC---cccchhhhhCceEEEeEEEecCCCceecccccceEE
Confidence 6553 2222 678999999999999999 999988542 234689999999999999999999999999999999
Q ss_pred eecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 215 VVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 215 ~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
+|++ ..+|+++|+.++.+|.++|+|+|.|++|++++.+.++..|.++|+||+|||+||.||
T Consensus 144 ~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~ 206 (334)
T cd02659 144 QVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFD 206 (334)
T ss_pred EEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEc
Confidence 9999 589999999999999999999999999999999999999999999999999999997
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.1e-41 Score=294.03 Aligned_cols=194 Identities=29% Similarity=0.407 Sum_probs=167.1
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF 142 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~ 142 (276)
||.|+||||||||+||+|+++|+||+++++........ .....++..+|+.||..|+.+. ..++|..|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~ 68 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGA-----------NQSSDNLTNALRDLFDTMDKKQ-EPVPPIEF 68 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccccc-----------ccchhHHHHHHHHHHHHHHhCC-CcCCcHHH
Confidence 89999999999999999999999999999875432100 0113579999999999998876 47999999
Q ss_pred HHHhC-----C------CCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCC-Ceeeeeec
Q psy2295 143 VLTLG-----L------DRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACG-NETDRSEI 210 (276)
Q Consensus 143 ~~~l~-----~------~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~-~~s~~~e~ 210 (276)
+..++ | ..++||||+||+..||+ .|++++... ....+.|.++|+|++.+.++|..|+ .++.+.|+
T Consensus 69 ~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld-~L~~~~~~~--~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~ 145 (305)
T cd02657 69 LQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLS-VLSQKLPGA--GSKGSFIDQLFGIELETKMKCTESPDEEEVSTES 145 (305)
T ss_pred HHHHHHHCcCcccccCCCCccccCHHHHHHHHHH-HHHHHhccc--CCCCcHHHHhhceEEEEEEEcCCCCCCCcccccc
Confidence 99885 3 45599999999999999 999998541 2335689999999999999999999 78999999
Q ss_pred ceeeeecc--c---ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 211 FYELVVNV--C---KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 211 f~~l~l~i--~---~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
|+.|+|+| . .+|+++|+.+++++.. ..|+.|+....++|+..|.++|+||+|||+||.||+
T Consensus 146 f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~ 211 (305)
T cd02657 146 EYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKR 211 (305)
T ss_pred ceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCcccc
Confidence 99999999 2 5799999999987654 479999999999999999999999999999999974
No 11
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-40 Score=288.55 Aligned_cols=157 Identities=27% Similarity=0.500 Sum_probs=139.1
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF 142 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~ 142 (276)
||.|+||||||||+||+|+++|+||++++.. +..+...+....
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~~---------------------P~~~~~~l~~~~---------------- 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSET---------------------PKELFSQVCRKA---------------- 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHHC---------------------HHHHHHHHHHhh----------------
Confidence 9999999999999999999999999999860 223333332210
Q ss_pred HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc----
Q psy2295 143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV---- 218 (276)
Q Consensus 143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i---- 218 (276)
-.|..++||||+||+..||+ .|+ +++.++|.|++.+.++|..|++.+.+.|+|+.|+|++
T Consensus 44 ---~~f~~~~QqDA~Efl~~lld-~l~------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~ 107 (279)
T cd02667 44 ---PQFKGYQQQDSHELLRYLLD-GLR------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEI 107 (279)
T ss_pred ---HhhcCCchhhHHHHHHHHHH-HHH------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCccc
Confidence 12678899999999999999 988 4688999999999999999999999999999999987
Q ss_pred --cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 219 --CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 219 --~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
..+|+++|+.|+++|.++|+|+|.|++|++ |+|+..|.++|+||+|||+||.|+
T Consensus 108 ~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~ 163 (279)
T cd02667 108 KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQP 163 (279)
T ss_pred CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccC
Confidence 469999999999999999999999999988 899999999999999999999997
No 12
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-40 Score=273.03 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=174.1
Q ss_pred cCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q psy2295 55 LRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK 134 (276)
Q Consensus 55 ~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~ 134 (276)
......|.||+|+|||||||++||||+.+..+..++...-+......+...+ . ........+..++..|.....
T Consensus 65 ~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg--~----~g~~~~k~F~~l~~~~~~Hg~ 138 (415)
T COG5533 65 RKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRG--K----PGSNAFKQFIALYETPGCHGP 138 (415)
T ss_pred hhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCC--C----cchhHHHHHHHHHhccccCCC
Confidence 3345689999999999999999999999999999665543332211111100 0 011344555566666655556
Q ss_pred cccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc-------------------------------
Q psy2295 135 LLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP------------------------------- 178 (276)
Q Consensus 135 ~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~------------------------------- 178 (276)
..|+|..|+..++ |.+.+|||+|||+.++|| .||+++...+..
T Consensus 139 ~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD-~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L 217 (415)
T COG5533 139 KSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLD-LLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHL 217 (415)
T ss_pred cccchHHHHHHHccccccccccchhhHHHHHHHHHH-HHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhh
Confidence 7899999999987 888899999999999999 999998653311
Q ss_pred -chhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeE
Q psy2295 179 -HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAG 253 (276)
Q Consensus 179 -~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~ 253 (276)
...++|.+.|.|+..++++|..|++.|+++.+|..|.+++ ...|.||++.|.++|.++|+++++|++|+++..+.
T Consensus 218 ~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~ 297 (415)
T COG5533 218 RSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSR 297 (415)
T ss_pred ccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccch
Confidence 0137899999999999999999999999999999999999 56799999999999999999999999999999999
Q ss_pred EEEEeccCCceEEEEEecee
Q psy2295 254 RRIRLKYLPKVLNLQLMRFV 273 (276)
Q Consensus 254 k~~~i~~lP~vL~i~L~Rf~ 273 (276)
|++.|.++|++|||||+||.
T Consensus 298 K~~~I~~lP~~LII~i~RF~ 317 (415)
T COG5533 298 KRMEILVLPDVLIIHISRFH 317 (415)
T ss_pred heEEEEecCceEEEEeeeee
Confidence 99999999999999999997
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-39 Score=296.48 Aligned_cols=201 Identities=19% Similarity=0.265 Sum_probs=160.4
Q ss_pred CCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC--Cc
Q psy2295 58 PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--KL 135 (276)
Q Consensus 58 ~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~ 135 (276)
.+|++||.|+||||||||+||+|+++|+||++++......... ....++..+|+.+++.+|.+. +.
T Consensus 116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~------------~~~~~l~~~l~~l~~kl~~~~~~~~ 183 (440)
T cd02669 116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIK------------DRKSELVKRLSELIRKIWNPRNFKG 183 (440)
T ss_pred cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhcccccccc------------CCCcHHHHHHHHHHHHHhccccCCC
Confidence 4689999999999999999999999999999999764432110 012478999999999999765 57
Q ss_pred ccCcHHHHHHhC------CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCC-------
Q psy2295 136 LVDPTDFVLTLG------LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACG------- 202 (276)
Q Consensus 136 ~i~p~~~~~~l~------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~------- 202 (276)
.++|..|+.+++ |.++.|||||||+.+||+ .|++++.... +...++|+++|+|++++.++|..|+
T Consensus 184 ~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd-~L~~~l~~~~-~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~ 261 (440)
T cd02669 184 HVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLN-TLHKDLGGSK-KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSK 261 (440)
T ss_pred ccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHH-HHHHHhccCC-CCCCCcceeccCceEEEEEEeecccccccccc
Confidence 899999998874 678999999999999999 9999986532 2346799999999999999987554
Q ss_pred --------Ceeeeeecceeeeecc-cc------cHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEE
Q psy2295 203 --------NETDRSEIFYELVVNV-CK------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNL 267 (276)
Q Consensus 203 --------~~s~~~e~f~~l~l~i-~~------sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i 267 (276)
..+.+.++|+.|+|+| .. +...++..+...|.++ +|.|++|...++++|+.+|.+||+||+|
T Consensus 262 ~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLii 338 (440)
T cd02669 262 DKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIF 338 (440)
T ss_pred cccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEE
Confidence 2456789999999999 11 1122222233333344 4888899988999999999999999999
Q ss_pred EEeceeec
Q psy2295 268 QLMRFVFD 275 (276)
Q Consensus 268 ~L~Rf~~d 275 (276)
|||||.|+
T Consensus 339 hLKRF~~~ 346 (440)
T cd02669 339 HIKRFSKN 346 (440)
T ss_pred EEecccCC
Confidence 99999986
No 14
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-40 Score=294.51 Aligned_cols=152 Identities=29% Similarity=0.428 Sum_probs=129.6
Q ss_pred CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccC
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVD 138 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~ 138 (276)
-|.+||+|+||||||||+||||.|++.+|+|++.-.+.+...+.+..++. +.+..++..|..++..+...++.
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmh-------g~vAsayadLik~ly~~~~haf~ 335 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMH-------GSVASAYADLIKQLYDGNLHAFT 335 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchh-------hhHHHHHHHHHHHHhCccccccC
Confidence 48899999999999999999999999999999987766655444333332 45777778888888888888999
Q ss_pred cHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhcc------CCc-----------------------chhhhh
Q psy2295 139 PTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQ------SLP-----------------------HIKNFI 184 (276)
Q Consensus 139 p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~------~~~-----------------------~~~~~i 184 (276)
|..|+..+| |.++.|||+|||+.+||| .||+++.+- ..| ...++|
T Consensus 336 Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLD-gLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiI 414 (823)
T COG5560 336 PSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLD-GLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSII 414 (823)
T ss_pred hHHHHHHHhhhHHHhcCccchhHHHHHHHHHH-HHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccH
Confidence 999999998 899999999999999999 999988731 111 125899
Q ss_pred hhccceEEEEEEEeCCCCCeeeeeecceeeeecc
Q psy2295 185 KDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV 218 (276)
Q Consensus 185 ~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 218 (276)
.++|.|.++++..|+.|+.++.+++||..|+||+
T Consensus 415 tdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPL 448 (823)
T COG5560 415 TDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPL 448 (823)
T ss_pred HHHHHHHhhceeeccCcCceeeeecchhhccccC
Confidence 9999999999999999999999999999999987
No 15
>KOG1866|consensus
Probab=100.00 E-value=5.3e-40 Score=298.31 Aligned_cols=247 Identities=30% Similarity=0.478 Sum_probs=212.7
Q ss_pred cccccccccCCCCccccccc--ccchhcccccCCCCCCCCCCcccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHH
Q psy2295 13 ILCIISSRNCKGNPFCLASL--GESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAV 90 (276)
Q Consensus 13 ~~c~~~~~nc~~~p~c~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l 90 (276)
+.|..|..||+.+..|++.+ -+.+|.+... ..-....|...+|.+.+.+||+|-|+|||||+++|-+.++|.+|+.+
T Consensus 46 A~~~~cV~nlkrs~~~~~tl~l~~k~~~s~q~-lyE~~YlppVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~l 124 (944)
T KOG1866|consen 46 ALAIGCVYNLKRSVDCLMTLYYMFKATTSCQA-LYEWEYLPPVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLL 124 (944)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccCcccCCCcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchh
Confidence 45567888888888888775 2444443322 11224566777888999999999999999999999999999999999
Q ss_pred hccCCCCCccccCCCCCCCCCCCC-cccHHHHHHHHHHHHhcCCCcccCcHHHHHHhC-----CCCCccccHHHHHHHHH
Q psy2295 91 LDWNPREDSEEKNNPSLGFSGFYE-PQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFL 164 (276)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll 164 (276)
+......... ++. ...+++++|.+|+.+..++-+++-|..|++.++ .+..+||||-||+..|+
T Consensus 125 l~~~~~td~p-----------d~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLl 193 (944)
T KOG1866|consen 125 LAFVGTTDLP-----------DMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLL 193 (944)
T ss_pred hhhcccccch-----------hhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHH
Confidence 8876552211 111 123999999999999999999999999999998 45679999999999999
Q ss_pred HHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc-cccHHHHHHHhhccceecCCCcccc
Q psy2295 165 SNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV-CKTLDESMREFLKEELLEGDDQYFC 243 (276)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i-~~sl~~~L~~~~~~e~l~g~n~~~C 243 (276)
| .+++.+++.+.|. +++..|+|.+..+..|..|-+..+..|+|..|+|.| +.+|+++|+.|.+.|.++|+|.|+|
T Consensus 194 d-~~De~LKklg~p~---lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~~~nLeesLeqfv~gevlEG~nAYhC 269 (944)
T KOG1866|consen 194 D-SLDEALKKLGHPQ---LFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIRHQNLEESLEQFVKGEVLEGANAYHC 269 (944)
T ss_pred H-HHHHHHHHhCCcH---HHHHHhcCccchhhhhccCCcccCccccceeeeeecccchHHHHHHHHHHHHHhcCcchhhh
Confidence 9 9999998766554 789999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 244 NRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 244 ~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
++|++++...|++.|++||++|+||||||.||
T Consensus 270 eKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD 301 (944)
T KOG1866|consen 270 EKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYD 301 (944)
T ss_pred hhhhhhhHhHHHHHHhhCChhheehhhhccch
Confidence 99999999999999999999999999999998
No 16
>KOG1863|consensus
Probab=100.00 E-value=6.4e-37 Score=303.65 Aligned_cols=250 Identities=32% Similarity=0.481 Sum_probs=219.5
Q ss_pred ccCCcccccccccCCCCcccccccccchhcccccCCCCCCC-CCCcccCCCCCcccccccCCcchhhHHHHHHhcCHHHH
Q psy2295 9 CPNLILCIISSRNCKGNPFCLASLGESRWFNEQKHDSSDDF-DPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFR 87 (276)
Q Consensus 9 ~~~~~~c~~~~~nc~~~p~c~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~ 87 (276)
..|-..|+.|.++|+.++.++...|...+............ .+..+.+..+-++||+|+||||||||+||+||.++.||
T Consensus 117 ~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR 196 (1093)
T KOG1863|consen 117 RDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFR 196 (1093)
T ss_pred cchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeeehHHHHHHHccHHHH
Confidence 45667788999999999999999998888877666555533 34444555555699999999999999999999999999
Q ss_pred HHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHHHHHhCCCC---CccccHHHHHHHHH
Q psy2295 88 KAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDR---SYQQDAQEFSKLFL 164 (276)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~~~~---~~QqDa~Efl~~ll 164 (276)
+.++.+++......+ ...+..+|+.||..|+.++.+++++.++...+++.. .+|||+|||...|+
T Consensus 197 ~~Vy~~~~~~~~~~~------------~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~~~~~~QqDvqEf~~~l~ 264 (1093)
T KOG1863|consen 197 RAVYSIPPFTGHEDP------------RRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDSNDSFEQQDVQEFLTKLL 264 (1093)
T ss_pred HHHhcCCCCCCcccc------------cchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhcccccHHhhhhHHHHHHHHH
Confidence 999999752111111 245889999999999999999999999999999776 89999999999999
Q ss_pred HHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--cccHHHHHHHhhccceecCCCccc
Q psy2295 165 SNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYF 242 (276)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~ 242 (276)
| .||+.+.... ..+.+.++|.|++.+.+.|..|+..+.+.|.|+++.+++ ..++.++|+.|+..|+++|+|+ .
T Consensus 265 d-~LE~~~~~~~---~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~ 339 (1093)
T KOG1863|consen 265 D-WLEDSMIDAK---VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-Y 339 (1093)
T ss_pred H-HHHhhccchh---hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-c
Confidence 9 9999986544 467899999999999999999999999999999999999 7889999999999999999999 7
Q ss_pred cCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 243 CNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 243 C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
|+.|...+.|.+...+.+||+||.|||+||.||
T Consensus 340 ~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~ 372 (1093)
T KOG1863|consen 340 DAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYD 372 (1093)
T ss_pred cccccchhhhhcceeeccCCchhhhhhhheeee
Confidence 999999999999999999999999999999997
No 17
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-36 Score=263.98 Aligned_cols=183 Identities=28% Similarity=0.372 Sum_probs=150.5
Q ss_pred cccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCcc-------ccCC-CCCCCCCCCCcccHHHHHHHHHHHHhcC
Q psy2295 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSE-------EKNN-PSLGFSGFYEPQTAIGHLQMLFALMQHS 132 (276)
Q Consensus 61 ~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~~~l~~lf~~l~~~ 132 (276)
|+||.|+||||||||+||+|+++|+||++++.+....... ...+ .............++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999999986332100 0000 0000000001246999999999999999
Q ss_pred CCcccCcHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCC----------cchhhhhhhccceEEEEEEEeCCCC
Q psy2295 133 NKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSL----------PHIKNFIKDYFSGEYVYVTKCFACG 202 (276)
Q Consensus 133 ~~~~i~p~~~~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~----------~~~~~~i~~~F~g~~~~~~~C~~C~ 202 (276)
....++|..++..+.+ .||||+||+..||+ .|+.+++.... ....++|.++|.|++.+.++|..|+
T Consensus 81 ~~~~v~P~~~l~~l~~---~QQDa~Ef~~~lld-~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~~~~ 156 (343)
T cd02666 81 NTRSVTPSKELAYLAL---RQQDVTECIDNVLF-QLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMG 156 (343)
T ss_pred CCCccCcHHHHHhccc---cccchHHHHHHHHH-HHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEecccC
Confidence 9899999999998887 89999999999999 99999875432 2346789999999999999999997
Q ss_pred ---Ceeeeeecceeeeecc-c-----------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEE
Q psy2295 203 ---NETDRSEIFYELVVNV-C-----------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNL 267 (276)
Q Consensus 203 ---~~s~~~e~f~~l~l~i-~-----------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i 267 (276)
..+.+.|+|+.|+++| . .+|+++|+.|++.|. |.++|+||.|
T Consensus 157 ~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~vl~~ 213 (343)
T cd02666 157 NQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQRSQV 213 (343)
T ss_pred CCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCHHHHH
Confidence 6789999999999999 4 689999999998876 8999999999
Q ss_pred EEe
Q psy2295 268 QLM 270 (276)
Q Consensus 268 ~L~ 270 (276)
|||
T Consensus 214 qlq 216 (343)
T cd02666 214 QAQ 216 (343)
T ss_pred HHh
Confidence 987
No 18
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-35 Score=250.22 Aligned_cols=133 Identities=35% Similarity=0.611 Sum_probs=121.7
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF 142 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~ 142 (276)
||+|+||||||||+||+|+++|+||+++... .
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~----------------------~-------------------------- 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEF----------------------L-------------------------- 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHH----------------------H--------------------------
Confidence 9999999999999999999999999998753 0
Q ss_pred HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeee-eeecceeeeecc--c
Q psy2295 143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETD-RSEIFYELVVNV--C 219 (276)
Q Consensus 143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~-~~e~f~~l~l~i--~ 219 (276)
.|||||||+..||+ .|+. .+.++|.|++.+.++|..|++.+. +.|+|+.|+|+| .
T Consensus 33 ---------~QqDa~EFl~~ll~-~l~~------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~ 90 (240)
T cd02662 33 ---------EQQDAHELFQVLLE-TLEQ------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQ 90 (240)
T ss_pred ---------hhcCHHHHHHHHHH-HHHH------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEeccccc
Confidence 69999999999999 9982 467899999999999999999875 599999999999 2
Q ss_pred -----ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 220 -----KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 220 -----~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
.+|+++|+.|+++|.++| |.|++| +..|.++|+||+|||+||.||.
T Consensus 91 ~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~ 141 (240)
T cd02662 91 SSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDG 141 (240)
T ss_pred CCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcC
Confidence 489999999999999986 999999 6789999999999999999974
No 19
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=269.35 Aligned_cols=203 Identities=33% Similarity=0.528 Sum_probs=182.6
Q ss_pred cccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC
Q psy2295 53 QELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS 132 (276)
Q Consensus 53 ~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~ 132 (276)
..++..+|++||+|.|+||||||+||+||.+..||+.++..+...+.. ..++.-+||++|..|+.+
T Consensus 185 YnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~g--------------rdSValaLQr~Fynlq~~ 250 (1089)
T COG5077 185 YNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRG--------------RDSVALALQRLFYNLQTG 250 (1089)
T ss_pred cccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCc--------------cchHHHHHHHHHHHHhcc
Confidence 446678999999999999999999999999999999999986443321 245778999999999887
Q ss_pred CCcccCcHHHHHHhCC---CCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeee
Q psy2295 133 NKLLVDPTDFVLTLGL---DRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSE 209 (276)
Q Consensus 133 ~~~~i~p~~~~~~l~~---~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e 209 (276)
. .+++.++|...++| +..+|||.|||...|.| .||... +.....+.++.+|-|++++-+.|-.-..+|.+.|
T Consensus 251 ~-~PvdTteltrsfgWds~dsf~QHDiqEfnrVl~D-nLEksm---rgt~VEnaln~ifVgkmksyikCvnvnyEsarve 325 (1089)
T COG5077 251 E-EPVDTTELTRSFGWDSDDSFMQHDIQEFNRVLQD-NLEKSM---RGTVVENALNGIFVGKMKSYIKCVNVNYESARVE 325 (1089)
T ss_pred C-CCcchHHhhhhcCcccchHHHHHhHHHHHHHHHH-HHHHhh---cCChhhhHHhHHHHHHhhceeeEEEechhhhhHH
Confidence 7 78999999999996 46799999999999999 999854 4455678899999999999999999999999999
Q ss_pred cceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 210 IFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 210 ~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
.||.+.|++ .++|+|+++.|.+.|+++|+|+|.|++= .-++|.|..-+.++||||.+|||||.||
T Consensus 326 dfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~-GlqdAkKGViFeSlPpVlhlqLKRFeyD 392 (1089)
T COG5077 326 DFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKH-GLQDAKKGVIFESLPPVLHLQLKRFEYD 392 (1089)
T ss_pred HHHHHHhcccchhhHHHHHHHhhhheeccCCcccccccc-cchhhccceeeccCchHHHHHHHHhccc
Confidence 999999999 8999999999999999999999999984 4788999999999999999999999997
No 20
>KOG0944|consensus
Probab=100.00 E-value=7.3e-34 Score=256.64 Aligned_cols=200 Identities=25% Similarity=0.353 Sum_probs=168.5
Q ss_pred CCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC--
Q psy2295 56 RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN-- 133 (276)
Q Consensus 56 ~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-- 133 (276)
..+++++||+|+||+||+|||||+|+.+|.|....+.....-.. .. ..-...+.+++.+|...|..++
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~-~~---------~~P~ndf~cQ~~Kl~~gm~sgkys 371 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNC-YP---------KDPTNDFNCQLAKLLHGMLSGKYS 371 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeec-CC---------CCcchhHHHHHHHHHHHhhcCccc
Confidence 45789999999999999999999999999999888765111110 00 0002579999999999997642
Q ss_pred --------CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCC
Q psy2295 134 --------KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFA 200 (276)
Q Consensus 134 --------~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~ 200 (276)
...|+|..|+..++ |...+||||+|||.+||+ .|++....+. ..+.++|...+..++.|..
T Consensus 372 ~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~-ki~~n~rs~~-----~nptd~frF~ve~Rv~C~~ 445 (763)
T KOG0944|consen 372 KPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLE-KIRENSRSSL-----PNPTDLFRFEVEDRVSCLG 445 (763)
T ss_pred CccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHH-HHhhcccccC-----CCHHHHHHhhhhhhhhhhc
Confidence 24689999999997 999999999999999999 9998764431 3567899999999999999
Q ss_pred CCCeeeeeecceeeeecc--------cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEece
Q psy2295 201 CGNETDRSEIFYELVVNV--------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272 (276)
Q Consensus 201 C~~~s~~~e~f~~l~l~i--------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf 272 (276)
|+.++.++++-+.+.|+| ..++..||+.|+.+.+.+ |+|+.||.+..|+|+.+++++|++|+||++||
T Consensus 446 c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf 521 (763)
T KOG0944|consen 446 CRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRF 521 (763)
T ss_pred cccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEE
Confidence 999998888888888887 359999999999994444 99999999999999999999999999999999
Q ss_pred eec
Q psy2295 273 VFD 275 (276)
Q Consensus 273 ~~d 275 (276)
.|.
T Consensus 522 ~~~ 524 (763)
T KOG0944|consen 522 TLQ 524 (763)
T ss_pred Eec
Confidence 984
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=3.6e-32 Score=229.00 Aligned_cols=131 Identities=41% Similarity=0.712 Sum_probs=125.3
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF 142 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~ 142 (276)
||.|.|||||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999998
Q ss_pred HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--c-
Q psy2295 143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--C- 219 (276)
Q Consensus 143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~- 219 (276)
.||||+||+.+||+ .|+ +.+.++|+|++.+.++|..|+..+.+.|+|+.|+|++ .
T Consensus 21 ---------~QqDa~Ef~~~ll~-~l~------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~ 78 (230)
T cd02674 21 ---------DQQDAQEFLLFLLD-GLH------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGS 78 (230)
T ss_pred ---------hhhhHHHHHHHHHH-HHh------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEeccccc
Confidence 69999999999999 888 3688999999999999999999999999999999998 2
Q ss_pred -----ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 220 -----KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 220 -----~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
.+|+++|+.++.+|.++|++.+.|++|++++.+.++..|.++|++|+|||+||.|+
T Consensus 79 ~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~ 139 (230)
T cd02674 79 GDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS 139 (230)
T ss_pred CCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecC
Confidence 49999999999999999999999999999999999999999999999999999997
No 22
>KOG1868|consensus
Probab=99.97 E-value=5.3e-33 Score=258.08 Aligned_cols=211 Identities=31% Similarity=0.505 Sum_probs=176.5
Q ss_pred CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC-CCc
Q psy2295 57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS-NKL 135 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~-~~~ 135 (276)
...+.+||.|+|||||||++||||+.++.||..++......... .+.......+..+...++..++.. ...
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~--------~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 368 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFIN--------LDLFFGAEELESACAKLLQKLWHGHGQF 368 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcc--------cCCcccchhHHHHHHHhhhhhccCCCce
Confidence 45689999999999999999999999999997777764443322 011222346777777777766665 566
Q ss_pred ccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------------
Q psy2295 136 LVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP-------------------------------- 178 (276)
Q Consensus 136 ~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~-------------------------------- 178 (276)
.+.|..|+..++ |.++.|||+|||+.++++ .||+++.....+
T Consensus 369 s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld-~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~ 447 (653)
T KOG1868|consen 369 SVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLD-RLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLE 447 (653)
T ss_pred ecCcHHHHHHHhhcccccccccccchHHHHHHHHH-hhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhcc
Confidence 789999999986 677889999999999999 999998753210
Q ss_pred chhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--------cccHHHHHHHhhccceecCCCccccCcCCCce
Q psy2295 179 HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQ 250 (276)
Q Consensus 179 ~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~ 250 (276)
...+.|.++|.|++++.++|..||+.+.++++|+.++|+| ..+|.+|+..|.+.|+++|++.|.|++|+.+.
T Consensus 448 ~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~ 527 (653)
T KOG1868|consen 448 EEDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKE 527 (653)
T ss_pred ccchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcc
Confidence 0134489999999999999999999999999999999999 25699999999999999999999999999999
Q ss_pred eeE--EEEEeccCCceEEEEEeceeecC
Q psy2295 251 NAG--RRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 251 ~a~--k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
... |+..|.+||++|++||+||.+|+
T Consensus 528 ~~~~lK~~~i~~lp~iLiihL~Rf~~~~ 555 (653)
T KOG1868|consen 528 SSKTLKKLTILRLPKILIIHLKRFSSDG 555 (653)
T ss_pred cccccceeeeecCCHHHHHHHHHhccCc
Confidence 885 99999999999999999999873
No 23
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=227.85 Aligned_cols=200 Identities=25% Similarity=0.356 Sum_probs=168.1
Q ss_pred CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC---
Q psy2295 57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--- 133 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--- 133 (276)
.++.++||.|+||+||+||++|.|+....+...+..........-. +-..++.++|.+|...|....
T Consensus 299 ~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~----------~P~~~l~CQl~kll~~mk~~p~~~ 368 (749)
T COG5207 299 VPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMK----------NPLECLFCQLMKLLSKMKETPDNE 368 (749)
T ss_pred CCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeec----------CCchhHHHHHHHHHhhccCCCCcc
Confidence 3455999999999999999999999888777666543322221100 013579999999999886544
Q ss_pred -CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeee
Q psy2295 134 -KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDR 207 (276)
Q Consensus 134 -~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~ 207 (276)
...++|..|...++ |...+||||+|||.+||+ .|.+.+... ..+.|.++|...+...+.|..|+.++..
T Consensus 369 y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~-kirk~~~S~----~~~~It~lf~Fe~e~rlsC~~C~~v~yS 443 (749)
T COG5207 369 YVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLE-KIRKGERSY----LIPPITSLFEFEVERRLSCSGCMDVSYS 443 (749)
T ss_pred ccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHH-HHhhccchh----cCCCcchhhhhhhcceeccccccccccc
Confidence 34689999999998 889999999999999999 998765433 3446889999999999999999999999
Q ss_pred eecceeeeecc-----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 208 SEIFYELVVNV-----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 208 ~e~f~~l~l~i-----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
+++...+.++. .+++.++++.|+.+.+++ |.|++|+.+..|.++.-+++||++||+|..||.+.
T Consensus 444 ye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lq 512 (749)
T COG5207 444 YESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ 512 (749)
T ss_pred ccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeecc
Confidence 99999888887 688999999999999999 99999999999999999999999999999999864
No 24
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2e-29 Score=209.62 Aligned_cols=116 Identities=26% Similarity=0.359 Sum_probs=98.4
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccC-----CcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--cccHHH
Q psy2295 152 YQQDAQEFSKLFLSNFVEEKFRVQS-----LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDE 224 (276)
Q Consensus 152 ~QqDa~Efl~~ll~~~l~~~~~~~~-----~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~~sl~~ 224 (276)
.||||+||+..||+ .|+++++... .+...++|.++|.|++.+++.| |+..+.+.|+|+.|+|+| ..+|++
T Consensus 21 ~QQDa~Ef~~~Lld-~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L~e 97 (228)
T cd02665 21 QQQDVSEFTHLLLD-WLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNLHE 97 (228)
T ss_pred HHHHHHHHHHHHHH-HHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCHHH
Confidence 49999999999999 9999986432 1234678999999999987776 788899999999999999 799999
Q ss_pred HHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 225 SMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 225 ~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
+|+.++.+|.+++++.+ ....+.++..|.++|+||+|||+||.|++
T Consensus 98 ~L~~~~~ee~l~~~~~~------~~~~~~~~~~i~~lP~vL~i~LkRF~~~~ 143 (228)
T cd02665 98 CLEAAMFEGEVELLPSD------HSVKSGQERWFTELPPVLTFELSRFEFNQ 143 (228)
T ss_pred HHHHhhhhccccccccc------chhhhhhhhhhhhCChhhEEEeEeeEEcC
Confidence 99999999999875432 23446777889999999999999999974
No 25
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=5.3e-29 Score=210.55 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=102.5
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHhhccC-------CcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--
Q psy2295 148 LDRSYQQDAQEFSKLFLSNFVEEKFRVQS-------LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV-- 218 (276)
Q Consensus 148 ~~~~~QqDa~Efl~~ll~~~l~~~~~~~~-------~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i-- 218 (276)
|.+++||||||||.+||+ .|++++.... .........+.|.|++.+.++|..|++++.+.|+|+.|+|++
T Consensus 28 F~~~~QQDAhEFL~~LLd-~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~ 106 (245)
T cd02673 28 FDNDDQQDAHEFLLTLLE-AIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMID 106 (245)
T ss_pred cCCCchhhHHHHHHHHHH-HHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceecccccc
Confidence 788889999999999999 9998764321 001111245789999999999999999999999999999999
Q ss_pred --cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 219 --CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 219 --~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
..+++++++.+.+.+.++ |.|++|+.+ .+.++.+|.++|+||+|||+||.|+
T Consensus 107 ~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~ 160 (245)
T cd02673 107 NKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLR 160 (245)
T ss_pred CCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeec
Confidence 356788888888877776 899999986 7889999999999999999999875
No 26
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.95 E-value=4.5e-28 Score=207.18 Aligned_cols=158 Identities=35% Similarity=0.625 Sum_probs=126.2
Q ss_pred cccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCcccC
Q psy2295 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS--NKLLVD 138 (276)
Q Consensus 61 ~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~--~~~~i~ 138 (276)
|+||.|.||||||||+||+|+++|+|++++.............. ......+..+|+.+|..|+.+ ....++
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~i~ 73 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNP-------SKKIKEFLQQLQNLFRSLWSSNSSDSSIS 73 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSST-------TSCTCHHHHHHHHHHHHHHSSCSSSSEEH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccc-------cccccchhhhhhhhhhhhhhhccccccee
Confidence 68999999999999999999999999999997621110000000 001246999999999999988 678899
Q ss_pred cHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCC--------cchhhhhhhccceEEEEEEEeCCCCCee
Q psy2295 139 PTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL--------PHIKNFIKDYFSGEYVYVTKCFACGNET 205 (276)
Q Consensus 139 p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~--------~~~~~~i~~~F~g~~~~~~~C~~C~~~s 205 (276)
|..|..+++ |..+.||||+||+..||+ .++++...... ....+++.++|.|++...+.|..|+..
T Consensus 74 ~~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~- 151 (269)
T PF00443_consen 74 PSDFINALSSINPSFSNGEQQDAHEFLSFLLD-WLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS- 151 (269)
T ss_dssp CHHHHHHHHHHCGGGGSSSTEEHHHHHHHHHH-HHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE-
T ss_pred eccccccccccccccccccccchhhhhccccc-ccchhhcccccccccccccccccccccccccccccccccccccccc-
Confidence 999999985 678999999999999999 99998866432 234678899999999999999999887
Q ss_pred eeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 206 DRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 206 ~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
...+.++|++|+|+|+||.|+.
T Consensus 152 -------------------------------------------------~~~~~~~P~~L~i~l~R~~~~~ 173 (269)
T PF00443_consen 152 -------------------------------------------------QSSISSLPPILIIQLKRFEFDQ 173 (269)
T ss_dssp -------------------------------------------------EEEEEEBBSEEEEEEE-EEEES
T ss_pred -------------------------------------------------ccccccccceeeeccccceecc
Confidence 6788999999999999998763
No 27
>KOG1873|consensus
Probab=99.95 E-value=1.3e-28 Score=224.79 Aligned_cols=157 Identities=24% Similarity=0.342 Sum_probs=102.8
Q ss_pred ccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCC-----CCCCCCCCcccHHHHHHHHHHH
Q psy2295 54 ELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPS-----LGFSGFYEPQTAIGHLQMLFAL 128 (276)
Q Consensus 54 ~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~lf~~ 128 (276)
+.+.....+||.|||||||+|||||.|..+|.+|+.|...........-.++. ........+..+..+|.. ...
T Consensus 198 e~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e 276 (877)
T KOG1873|consen 198 EKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLE 276 (877)
T ss_pred cccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhh
Confidence 44455678999999999999999999999999999999877665322111111 111112225677888887 456
Q ss_pred HhcCCCcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295 129 MQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGN 203 (276)
Q Consensus 129 l~~~~~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 203 (276)
|..+.+..++|..|...+. |.+++||||||+|..|||....++.+..+ ..|...|+|+..+...|..|++
T Consensus 277 ~~e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~k-----k~Il~~fG~~t~~l~scle~~q 351 (877)
T KOG1873|consen 277 MSETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRK-----KNILSNFGGETSSLVSCLECGQ 351 (877)
T ss_pred hhhccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHH-----HhHHHhhCccccchhhhhhccc
Confidence 6677778999999988773 99999999999999999955555543211 1233334444444444444444
Q ss_pred eeeeeecceeeee
Q psy2295 204 ETDRSEIFYELVV 216 (276)
Q Consensus 204 ~s~~~e~f~~l~l 216 (276)
.+..+++|..+++
T Consensus 352 ~sKvYe~f~~~~~ 364 (877)
T KOG1873|consen 352 KSKVYEPFKDLSL 364 (877)
T ss_pred hhhcccccccCCc
Confidence 3444444444433
No 28
>KOG4598|consensus
Probab=99.95 E-value=5.7e-29 Score=225.36 Aligned_cols=176 Identities=26% Similarity=0.495 Sum_probs=159.1
Q ss_pred CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295 57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL 136 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~ 136 (276)
.+.+++||.|-.-|||+|+.+|+|+..|+|++.++.. ....
T Consensus 83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts---------------------------------------~~~~ 123 (1203)
T KOG4598|consen 83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS---------------------------------------ENDS 123 (1203)
T ss_pred CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC---------------------------------------Cccc
Confidence 4578999999999999999999999999998888632 2344
Q ss_pred cCcHHHHHHhCCC---CCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeeccee
Q psy2295 137 VDPTDFVLTLGLD---RSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYE 213 (276)
Q Consensus 137 i~p~~~~~~l~~~---~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~ 213 (276)
+..+.+...++|. .++|||.||+-..++| +||..++. .+..+.|++++.|++..-+.|.+|+.++++.+.|.+
T Consensus 124 ~et~dlt~sfgw~s~ea~~qhdiqelcr~mfd-alehk~k~---t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld 199 (1203)
T KOG4598|consen 124 LETKDLTQSFGWTSNEAYDQHDVQELCRLMFD-ALEHKWKG---TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLD 199 (1203)
T ss_pred ccchhhHhhcCCCcchhhhhhhHHHHHHHHHH-HHHhhhcC---chHHHHHHHHhcchHHHHHHHHHcCccccccceeec
Confidence 5666777777765 4689999999999999 99988853 455679999999999999999999999999999999
Q ss_pred eeecc--------cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 214 LVVNV--------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 214 l~l~i--------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
|+|+| ..+++++|..|..+|.++|.|+|-|++|+++++|.|...|+.+|=+|+||||||.||
T Consensus 200 ~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfd 269 (1203)
T KOG4598|consen 200 LPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFD 269 (1203)
T ss_pred ccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeeccccc
Confidence 99999 689999999999999999999999999999999999999999999999999999998
No 29
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.94 E-value=2e-26 Score=201.09 Aligned_cols=194 Identities=22% Similarity=0.380 Sum_probs=172.0
Q ss_pred ccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHh-cCCCcccCcH
Q psy2295 62 IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQ-HSNKLLVDPT 140 (276)
Q Consensus 62 ~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~-~~~~~~i~p~ 140 (276)
+||.|.+++||+||+||+|+++|++|+.++.+. . .. ...++.++|..||++|. .+.+..+.++
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~-c~--------------~e~cL~cELgfLf~ml~~~~~g~~cq~s 64 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E-CP--------------KEFCLLCELGFLFDMLDSKAKGINCQAS 64 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C-CC--------------ccccHHHHHHHHHHHhhhhcCCCcChHH
Confidence 599999999999999999999999999999986 2 11 13689999999999999 8888899999
Q ss_pred HHHHHhCC-----CCCccccHHHHHHHHHHHHHHHHhhccCC----------cchhhhhhhccceEEEEEEEeCCCCCee
Q psy2295 141 DFVLTLGL-----DRSYQQDAQEFSKLFLSNFVEEKFRVQSL----------PHIKNFIKDYFSGEYVYVTKCFACGNET 205 (276)
Q Consensus 141 ~~~~~l~~-----~~~~QqDa~Efl~~ll~~~l~~~~~~~~~----------~~~~~~i~~~F~g~~~~~~~C~~C~~~s 205 (276)
.|+.+++. ..+.|+|+++|+.+|++ .|+.++..... ....+.|.++|+......++|..|+.++
T Consensus 65 Nflr~l~~~~~a~~l~~~~~iq~~~~Fll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~ 143 (295)
T PF13423_consen 65 NFLRALSWIPEAAALGLQQDIQSLNRFLLE-QLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHES 143 (295)
T ss_pred HHHHHHhcCHHHHhcchhHHHHHHHHHHHH-HHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeE
Confidence 99999983 34679999999999999 99988765443 2245789999999999999999999999
Q ss_pred eeeecceeeeecc-----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 206 DRSEIFYELVVNV-----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 206 ~~~e~f~~l~l~i-----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
.+.+....+.|.. ..++.+.|+.++..|.... .+|++|++.+....+..|.++|+||.|.++|+..+
T Consensus 144 ~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~ 215 (295)
T PF13423_consen 144 VKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE 215 (295)
T ss_pred EeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc
Confidence 9999888888877 5799999999999999884 89999999999999999999999999999998765
No 30
>KOG1867|consensus
Probab=99.94 E-value=1.4e-26 Score=211.37 Aligned_cols=206 Identities=26% Similarity=0.422 Sum_probs=180.1
Q ss_pred CCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC-Ccc
Q psy2295 58 PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN-KLL 136 (276)
Q Consensus 58 ~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~~ 136 (276)
..+.+||+|+|+||+||++||.|.+.+..+...+......... ...+.++.+++..+|..++.+. +.+
T Consensus 158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~-----------~~~~~~l~~~~~~~~~~~~s~~~~~~ 226 (492)
T KOG1867|consen 158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPS-----------SSGSSCLVCDLDRLFQALYSGHNRTP 226 (492)
T ss_pred eecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCC-----------CCCCcchhhhhhhhhhHhhcCCCCCC
Confidence 4578999999999999999999999999988888765552221 1113589999999999999998 889
Q ss_pred cCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhh--------ccCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295 137 VDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFR--------VQSLPHIKNFIKDYFSGEYVYVTKCFACGN 203 (276)
Q Consensus 137 i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~--------~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 203 (276)
++|..++..++ +.++.|||||||+..+++ .++.+.+ .+.+....++++..|.|.+...++|..|+.
T Consensus 227 ~sp~~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~-~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~ 305 (492)
T KOG1867|consen 227 YSPFELLNLVWKHSPNLAGYEQQDAHEFLIALLD-RLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGS 305 (492)
T ss_pred cChHHHHHHHHHhCcccccccccchHHHHHHhcc-cccccccccccccccccCCcccccccceeecceeccceeehhhcc
Confidence 99999998875 778999999999999999 9998871 122224468899999999999999999999
Q ss_pred eeeeeecceeeeeccc------------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEec
Q psy2295 204 ETDRSEIFYELVVNVC------------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMR 271 (276)
Q Consensus 204 ~s~~~e~f~~l~l~i~------------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~R 271 (276)
.+..+++|++++|.|+ .++.++++.+...|....+.++.|..|+.++.++|+..+.++|.+|.+|++|
T Consensus 306 ~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkR 385 (492)
T KOG1867|consen 306 KSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKR 385 (492)
T ss_pred eeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecc
Confidence 9999999999999993 6799999999999988888899999999999999999999999999999999
Q ss_pred eeec
Q psy2295 272 FVFD 275 (276)
Q Consensus 272 f~~d 275 (276)
|.+.
T Consensus 386 fe~~ 389 (492)
T KOG1867|consen 386 FEHS 389 (492)
T ss_pred cccc
Confidence 9874
No 31
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=6.9e-26 Score=191.26 Aligned_cols=140 Identities=41% Similarity=0.712 Sum_probs=123.0
Q ss_pred cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF 142 (276)
Q Consensus 63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~ 142 (276)
||.|+||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999999
Q ss_pred HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCC-----cchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeec
Q psy2295 143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSL-----PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVN 217 (276)
Q Consensus 143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~-----~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~ 217 (276)
.||||+||+..+++ .|+.++..... ....+.+.++|.|.+...+.|..|+..+.....+..+.++
T Consensus 21 ---------~q~Da~E~l~~ll~-~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~ 90 (255)
T cd02257 21 ---------EQQDAHEFLLFLLD-KLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLP 90 (255)
T ss_pred ---------HHHHHHHHHHHHHH-HHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEee
Confidence 69999999999999 99998865322 2345789999999999999999998877666666666666
Q ss_pred c--c----ccHHHHHHHhhccceecCCCccccCcCC--CceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 218 V--C----KTLDESMREFLKEELLEGDDQYFCNRCG--KKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 218 i--~----~sl~~~L~~~~~~e~l~g~n~~~C~~C~--~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
+ . .+|+++|+.++.+|.+++ +.|..|+ +.+.+.++..+.++|++|+|||+||.++
T Consensus 91 ~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~ 153 (255)
T cd02257 91 LPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFN 153 (255)
T ss_pred ccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeec
Confidence 5 2 799999999999999986 7899998 6889999999999999999999999986
No 32
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=1.5e-24 Score=185.75 Aligned_cols=160 Identities=24% Similarity=0.366 Sum_probs=130.8
Q ss_pred CCCCcccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHH
Q psy2295 49 FDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFAL 128 (276)
Q Consensus 49 ~~~~~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~ 128 (276)
++.+......+.++||.|.|.|||+||+||+|+++|+||+++ .+...... ...++.++|+.||..
T Consensus 3 ~~fdf~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~-~~~~~~~~--------------~~~~l~~el~~lfs~ 67 (268)
T cd02672 3 EDFDFEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFT-AIILVACP--------------KESCLLCELGYLFST 67 (268)
T ss_pred ccccccccccccccccccCCccchHHHHHHHHHhcHHHHHHH-HhhcccCC--------------cCccHHHHHHHHHHH
Confidence 455666778889999999999999999999999999999983 22222111 136899999999911
Q ss_pred HhcCCCcccCcHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeee
Q psy2295 129 MQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRS 208 (276)
Q Consensus 129 l~~~~~~~i~p~~~~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~ 208 (276)
=.+-|..+|++ .+..+.... + ..|++++.+.
T Consensus 68 --------------------------~iq~F~~fll~-~i~~~~~~~------------~----------~~C~~~s~~~ 98 (268)
T cd02672 68 --------------------------LIQNFTRFLLE-TISQDQLGT------------P----------FSCGTSRNSV 98 (268)
T ss_pred --------------------------HHHHHHHHHHH-HHHHHhccc------------C----------CCCCceeecc
Confidence 23668888888 777554211 1 6899999999
Q ss_pred ecceeeeeccc-------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCc----eEEEEEeceeec
Q psy2295 209 EIFYELVVNVC-------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPK----VLNLQLMRFVFD 275 (276)
Q Consensus 209 e~f~~l~l~i~-------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~----vL~i~L~Rf~~d 275 (276)
++++.|+|++. .+|.++|+.++++|... +++|++|++++.|+|+.+|.++|+ ||+||||||.++
T Consensus 99 ~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~ 173 (268)
T cd02672 99 SLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGE 173 (268)
T ss_pred ccceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEEEEeccChh
Confidence 99999999992 59999999999998653 699999999999999999999999 999999999853
No 33
>KOG1870|consensus
Probab=99.91 E-value=8.6e-25 Score=212.64 Aligned_cols=155 Identities=26% Similarity=0.311 Sum_probs=126.6
Q ss_pred CCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCc
Q psy2295 56 RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKL 135 (276)
Q Consensus 56 ~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~ 135 (276)
....|.+||.|+||||||||.+|+|.+.+.++++++..............++ ...+-.....+...+|.....
T Consensus 241 ~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~-------~~~~~~~~~~l~~~~~s~~~~ 313 (842)
T KOG1870|consen 241 PSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGS-------AGEVASSFADLIKQLWSGNKS 313 (842)
T ss_pred CCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcc-------cceechhhhhHHHHhccCCcc
Confidence 3567999999999999999999999999999999998766652222211111 245666778888888888777
Q ss_pred ccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------chhhhh
Q psy2295 136 LVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------HIKNFI 184 (276)
Q Consensus 136 ~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------~~~~~i 184 (276)
.+.|..+...++ |.++.|||.+||+.+++| .+|+.+...... ...+++
T Consensus 314 ~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllD-glhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i 392 (842)
T KOG1870|consen 314 AVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLD-GLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVI 392 (842)
T ss_pred ccCchhhhhhhhhccccccCcccccchhhhhHHhh-hhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhcccee
Confidence 899999888775 889999999999999999 888887543222 125789
Q ss_pred hhccceEEEEEEEeCCCCCeeeeeecceeeeecc
Q psy2295 185 KDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV 218 (276)
Q Consensus 185 ~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 218 (276)
.++|.|.+++...|..|+..+.++++|..|++++
T Consensus 393 ~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~ 426 (842)
T KOG1870|consen 393 VDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPL 426 (842)
T ss_pred eeeecceecccccCccCCCceEEeeccccccccC
Confidence 9999999999999999999999999999988877
No 34
>KOG1864|consensus
Probab=99.87 E-value=3.2e-22 Score=185.71 Aligned_cols=208 Identities=29% Similarity=0.506 Sum_probs=169.4
Q ss_pred CCCCcccccccCCcchhh--HHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC-
Q psy2295 57 DPNEFIGLKNLGATCYVN--SLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN- 133 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~N--S~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~- 133 (276)
.....-|..|.+++|+.| ++.+.+..+-.+++..+.+....... ......+...+..+|.......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~ 296 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRS-----------YIIKEELLTCLLDLFSSISSRKK 296 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccch-----------hhhhHHHHHHhhhhccchhhhcc
Confidence 456789999999999999 99999999999986555443221100 0012345555566655543332
Q ss_pred -CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccC------------C-----c------------
Q psy2295 134 -KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQS------------L-----P------------ 178 (276)
Q Consensus 134 -~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~------------~-----~------------ 178 (276)
...+.|..+...++ |..+.|||||||+.++++ .+++...... + .
T Consensus 297 ~~~~i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~-~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~ 375 (587)
T KOG1864|consen 297 LVGRISPTRFISDLIKENELFTNGMQQDAHEFLNFLLN-EISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKS 375 (587)
T ss_pred cccccCcchhhhhhhhcCCccCchhhccHHHHhhhhcc-chhhhhhhhccCCcccccccCCCCccccccccccccccccc
Confidence 23578998888876 899999999999999999 8887654321 0 0
Q ss_pred chhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeEE
Q psy2295 179 HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGR 254 (276)
Q Consensus 179 ~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k 254 (276)
...++++.+|.|++..+++|..|+..+.+.+.|.++++++ ..++..+|+.|..+|.+.|+|+|.|++|...+.|++
T Consensus 376 ~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~ 455 (587)
T KOG1864|consen 376 LRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAER 455 (587)
T ss_pred cchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHH
Confidence 1357899999999999999999999999999999999988 789999999999999999999999999999999999
Q ss_pred EEEeccCCceEEEEEeceeecC
Q psy2295 255 RIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 255 ~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
++.++++|.+|+||||||+|++
T Consensus 456 ~l~~k~lp~~L~l~Lkrfk~~~ 477 (587)
T KOG1864|consen 456 RLKIKKLPYVLTLHLKRFKYSE 477 (587)
T ss_pred hccccCCcceeeeehhcccccc
Confidence 9999999999999999999974
No 35
>KOG2026|consensus
Probab=99.84 E-value=3.1e-20 Score=159.10 Aligned_cols=189 Identities=25% Similarity=0.304 Sum_probs=150.5
Q ss_pred CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC--Ccc
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--KLL 136 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~ 136 (276)
.|.+||.|+.++=|.|+++|+|.+.+++|++++.-....+ ....++..|..+.+.+|.+. +.-
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d---------------~~~~lv~rl~~l~rklw~~r~fk~h 196 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFD---------------NLTELVQRLGELIRKLWNPRNFKGH 196 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhcccccccc---------------hhHHHHHHHHHHHHHhcChhhhccc
Confidence 5789999999999999999999999999999987533111 13578899999999999985 567
Q ss_pred cCcHHHHHHhC------CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCC----CCCeee
Q psy2295 137 VDPTDFVLTLG------LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFA----CGNETD 206 (276)
Q Consensus 137 i~p~~~~~~l~------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~----C~~~s~ 206 (276)
++|.+++.++- |..++|-|+.||+.|||+ .|+..++..+++ .++|+..|.|+++...+=.. -.....
T Consensus 197 vSphe~lqaV~~~s~k~f~i~~q~DpveFlswlln-tlhs~l~~~k~~--~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i 273 (442)
T KOG2026|consen 197 VSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLN-TLHSDLRGSKKA--SSIIHKSFQGEVRIVKEKQGEASENENKEI 273 (442)
T ss_pred CCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHH-HHHHHhCCCCCc--hhHhhHhhcceEEeeeeccccccccccceE
Confidence 99999998873 899999999999999999 999999877643 58999999999987655322 112235
Q ss_pred eeecceeeeecc----------------cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEe
Q psy2295 207 RSEIFYELVVNV----------------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLM 270 (276)
Q Consensus 207 ~~e~f~~l~l~i----------------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~ 270 (276)
...+|+.|.|++ -..|.+.|..|-....-+ + .....+ ++..+.++|++||+|++
T Consensus 274 ~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~-----~~~~~~-~rf~l~k~P~ylifh~~ 343 (442)
T KOG2026|consen 274 SVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----V-----VTPKLA-MRFRLTKLPRYLIFHMK 343 (442)
T ss_pred EEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----e-----cchhhh-hheeeecCCceEEEEee
Confidence 567899998877 257888888887665444 2 122334 88999999999999999
Q ss_pred ceeec
Q psy2295 271 RFVFD 275 (276)
Q Consensus 271 Rf~~d 275 (276)
||.=+
T Consensus 344 rF~kN 348 (442)
T KOG2026|consen 344 RFKKN 348 (442)
T ss_pred ecccc
Confidence 99743
No 36
>KOG1871|consensus
Probab=99.82 E-value=2.6e-20 Score=160.09 Aligned_cols=200 Identities=23% Similarity=0.323 Sum_probs=146.4
Q ss_pred CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhc-------
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH------- 131 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~------- 131 (276)
-.|+|+.|-||-|||||+||+|+.+++|.+.+...+....... .. ...++.++..+.....+
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~-~~----------stp~lda~~~~~~df~n~~~~k~~ 94 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVK-EG----------STPLLDASRPASSDFNNDSDAKLP 94 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCcee-cc----------cchhHHHHHHHHhhccccchhhhh
Confidence 7899999999999999999999999999998876542221111 00 23344444444333321
Q ss_pred ----------------C-----CCcccCcHHHHHHhC-------CCCCccccHHHHHHHHHHHHHHHHhhccC-------
Q psy2295 132 ----------------S-----NKLLVDPTDFVLTLG-------LDRSYQQDAQEFSKLFLSNFVEEKFRVQS------- 176 (276)
Q Consensus 132 ----------------~-----~~~~i~p~~~~~~l~-------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~------- 176 (276)
+ +..++-|..+...+. ...|.|.||.||+..+|| .+++++....
T Consensus 95 r~N~~~~~~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld-~lhee~~~v~~~~~~~n 173 (420)
T KOG1871|consen 95 RKNSLRVPEHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLD-FLHEESSEVPTELVPPN 173 (420)
T ss_pred hhccCCccccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHh-hhhHHHHhhhhhhcCCc
Confidence 0 011222333333221 346899999999999999 9999864311
Q ss_pred ---------------------------------------------CcchhhhhhhccceEEEEEEEeCCCCCeeeeeecc
Q psy2295 177 ---------------------------------------------LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIF 211 (276)
Q Consensus 177 ---------------------------------------------~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f 211 (276)
..-..+.|.++|+|++++...=. -.+++..-+||
T Consensus 174 ~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~-~nkeS~tlqPF 252 (420)
T KOG1871|consen 174 DEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQP-SNKESATLQPF 252 (420)
T ss_pred ccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceecc-ccccccccCcc
Confidence 00124789999999999987733 34557889999
Q ss_pred eeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 212 YELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 212 ~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
..+.|+| ..++.++++.+...|.+.+ |.-. -+..+.+.+++.+.++|++|++||+||.|.
T Consensus 253 ~tlqldiq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye 316 (420)
T KOG1871|consen 253 FTLQLDIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYE 316 (420)
T ss_pred ceeeeeeeccccCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHH
Confidence 9999999 7899999999999999996 5443 577888999999999999999999999985
No 37
>KOG1872|consensus
Probab=99.72 E-value=3.9e-18 Score=150.26 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=156.8
Q ss_pred CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295 57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL 136 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~ 136 (276)
...-++||.|+|||||||+.+|+|...|+++..+..+......... -.....+..+++.+|+.|..+ .+
T Consensus 101 ~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t---------~~~a~~i~~~mR~~f~~~~~~--~~ 169 (473)
T KOG1872|consen 101 ALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDT---------WERRRRISIETRTCFRPLCEK--GA 169 (473)
T ss_pred hccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCch---------hhhhhhHHHHHHHHHHhhhcc--CC
Confidence 3456889999999999999999999999999999877533221100 001357888999999999887 78
Q ss_pred cCcHHHHHHhC-----C------CCCccccHHHHHHHHHHHHHHHHhhccCCc-chhhhhhhccceEEEEEEEeCCCCCe
Q psy2295 137 VDPTDFVLTLG-----L------DRSYQQDAQEFSKLFLSNFVEEKFRVQSLP-HIKNFIKDYFSGEYVYVTKCFACGNE 204 (276)
Q Consensus 137 i~p~~~~~~l~-----~------~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~-~~~~~i~~~F~g~~~~~~~C~~C~~~ 204 (276)
+.|..+..+++ | ..+.||||.|++..++. .++..+...... .....+...|++.+..+..|..-...
T Consensus 170 v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~-~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~ 248 (473)
T KOG1872|consen 170 VAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPG-MLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDE 248 (473)
T ss_pred cchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhh-heeccccccccccchhHHHHHhhccccccceeeccCccc
Confidence 99999998885 2 34799999999999999 998877654333 44567889999999999999887666
Q ss_pred eee--eecceeeeecc---cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 205 TDR--SEIFYELVVNV---CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 205 s~~--~e~f~~l~l~i---~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
... .|.|..|...| ...+...|..-+++++.. ..+.-|......|...|.+||.+|+||..||.|.+
T Consensus 249 ~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~ 320 (473)
T KOG1872|consen 249 GGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKA 320 (473)
T ss_pred ccccccccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEecc
Confidence 433 67888888877 556667777666655432 34444555566899999999999999999999964
No 38
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.55 E-value=9.5e-15 Score=122.76 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=65.3
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc-----cccHHHHH
Q psy2295 152 YQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV-----CKTLDESM 226 (276)
Q Consensus 152 ~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i-----~~sl~~~L 226 (276)
.|||+.||+++|++ .++.-+- +..-++|.|-....-.. +...|.++.|+++. ..||++||
T Consensus 22 ~q~D~~e~~~~l~~-~~~~~~~--------~~~~~~~~~g~~~~~~~------~~~~e~~l~l~ip~~~~~~~~tLedcL 86 (241)
T cd02670 22 EQQDPEEFFNFITD-KLLMPLL--------EPKVDIIHGGKKDQDDD------KLVNERLLQIPVPDDDDGGGITLEQCL 86 (241)
T ss_pred HhcCHHHHHHHHHH-HHhhhhh--------hHHHHHHhcCccccccc------cccccceEEeecccCCCCCcCCHHHHH
Confidence 59999999999999 8886431 23445665532221110 34467888888887 46999999
Q ss_pred HHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 227 REFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 227 ~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
+.|++.|+ |.++|+||+||||||.|+
T Consensus 87 e~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~ 112 (241)
T cd02670 87 EQYFNNSV-----------------------FAKAPSCLIICLKRYGKT 112 (241)
T ss_pred HHHhchhh-----------------------hhhCCCeEEEEEEccccC
Confidence 99999986 899999999999999996
No 39
>KOG1275|consensus
Probab=99.45 E-value=1.6e-13 Score=129.01 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=151.6
Q ss_pred ccCCCCCCCCCCcccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHH
Q psy2295 41 QKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120 (276)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (276)
+....++.++.++..-..+.++||.-.+-+-|.|++||+|+.+|++|..++.+.... ..++.+
T Consensus 479 lkysk~G~edFDF~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~~-----------------e~CL~C 541 (1118)
T KOG1275|consen 479 LKYSKFGTEDFDFQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICTK-----------------EFCLLC 541 (1118)
T ss_pred eeecccccccCCCcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccch-----------------hHHHHH
Confidence 444556677777888888999999999999999999999999999999999984332 368999
Q ss_pred HHHHHHHHHhcCCCcccCcHHHHHHhCCC----------CC-----------ccccHHHHHHHHHHHHHHHHhhc-----
Q psy2295 121 HLQMLFALMQHSNKLLVDPTDFVLTLGLD----------RS-----------YQQDAQEFSKLFLSNFVEEKFRV----- 174 (276)
Q Consensus 121 ~l~~lf~~l~~~~~~~i~p~~~~~~l~~~----------~~-----------~QqDa~Efl~~ll~~~l~~~~~~----- 174 (276)
+|..||.+|..+.+......+|+.+++-. .. .-|||..|.....+ ...+..+.
T Consensus 542 ELGFLF~Ml~~S~G~~Cqa~NFlraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~-~~~d~~~~~~~~~ 620 (1118)
T KOG1275|consen 542 ELGFLFTMLDSSTGDPCQANNFLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETS-RHLDCQDCRGLQQ 620 (1118)
T ss_pred HHHHHHHHHhhhcCCccchhHHHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhh-hhhhHHHhhhhhh
Confidence 99999999999988899999999988510 11 11344433333333 22211110
Q ss_pred -c------CCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc-cccH----------HHHHHHhhccceec
Q psy2295 175 -Q------SLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV-CKTL----------DESMREFLKEELLE 236 (276)
Q Consensus 175 -~------~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i-~~sl----------~~~L~~~~~~e~l~ 236 (276)
. ........+.+.|+.+.+...+|-.|+.++.+......+.+.. +.++ .+.|+.-+..+.-.
T Consensus 621 s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~ 700 (1118)
T KOG1275|consen 621 SESVDGESFKVNYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNK 700 (1118)
T ss_pred hhcccCceeeecchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccccc
Confidence 0 0011245899999999999999999999887766666666655 3333 34444333332222
Q ss_pred CCCccccCcCCCceeeEEEEEeccCCceEEEEEec
Q psy2295 237 GDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMR 271 (276)
Q Consensus 237 g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~R 271 (276)
+-.|+.|++......+..+.+||++|.|...-
T Consensus 701 ---~~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~ 732 (1118)
T KOG1275|consen 701 ---QAWCETCTKPEPTSQKKNVRSLPDCLSINTCL 732 (1118)
T ss_pred ---ccccccccCCCCcccccccccCcceeeeeeec
Confidence 36899999999999999999999999997653
No 40
>KOG1864|consensus
Probab=98.06 E-value=1.6e-06 Score=81.67 Aligned_cols=114 Identities=21% Similarity=0.229 Sum_probs=64.4
Q ss_pred ccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCC--CcccHHHHHHHHHHHHhcCCC-cccCcH
Q psy2295 64 LKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFY--EPQTAIGHLQMLFALMQHSNK-LLVDPT 140 (276)
Q Consensus 64 L~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~lf~~l~~~~~-~~i~p~ 140 (276)
|.|.||+||.||+||++..+|+|+-.+..............+.....+.. .......+....+........ ..++-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999999877643332221111111100000 011111222222222211111 111222
Q ss_pred HHHHHh--------CCCCCccccHHHHHHHHHHHHHHHHhhccCCc
Q psy2295 141 DFVLTL--------GLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP 178 (276)
Q Consensus 141 ~~~~~l--------~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~ 178 (276)
.+.... +|....|+||++++..++. .+.+.++....+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~-~~~~~~~~~~~~ 158 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMA-MVDDVMGVSEEP 158 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhH-HHhhhcccCccc
Confidence 222222 1778899999999999999 998887665444
No 41
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=96.97 E-value=0.0031 Score=52.69 Aligned_cols=74 Identities=22% Similarity=0.440 Sum_probs=50.2
Q ss_pred hhhhhhccceEEEEEEEeCCCCCeee-----eeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCceeeEEE
Q psy2295 181 KNFIKDYFSGEYVYVTKCFACGNETD-----RSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRR 255 (276)
Q Consensus 181 ~~~i~~~F~g~~~~~~~C~~C~~~s~-----~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~ 255 (276)
...+.++|.-.+.-...|..||+... .-.+|..+.-+- . -+....--.|.+|+.+. ..|+
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pdw-h-------------PLnA~h~~pCn~C~~ks-Q~rk 184 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPDW-H-------------PLNAVHFGPCNSCNSKS-QRRK 184 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCCC-C-------------cccccccCCCcccCChH-HhHh
Confidence 46789999999999999999998742 222333321111 1 11111124699998764 4778
Q ss_pred EEeccCCceEEEEE
Q psy2295 256 IRLKYLPKVLNLQL 269 (276)
Q Consensus 256 ~~i~~lP~vL~i~L 269 (276)
+.+.++|+|+++|+
T Consensus 185 Mvlekv~~vfmLHF 198 (275)
T PF15499_consen 185 MVLEKVPPVFMLHF 198 (275)
T ss_pred hhhhcCchhhhhhh
Confidence 99999999999986
No 42
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.82 E-value=0.013 Score=46.47 Aligned_cols=24 Identities=46% Similarity=0.731 Sum_probs=16.3
Q ss_pred CCcccccccCCcchhhHHHHHHhc
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFH 82 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~ 82 (276)
-.++|+.|.+|+||+||++|.+..
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 346699999999999999998743
No 43
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=91.64 E-value=0.66 Score=40.85 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=37.6
Q ss_pred CCcccccccCCcchhhHHHHHHhcCHH-HHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCccc
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFHNLP-FRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV 137 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i 137 (276)
.+.+=|+=..|+||+||++=.|-+... |+ . ..++.++..+.. -
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~----------------------------~---~~l~~aw~~f~~-----G 143 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFK----------------------------S---PGLDEAWNEFKA-----G 143 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BS----------------------------S---HHHHHHHHHHHT-----T
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccC----------------------------C---HHHHHHHHHHhC-----C
Confidence 455556777899999999766544321 21 1 123444444422 3
Q ss_pred CcHHHHHHh----CCCCCccccHHHHHHHHHH
Q psy2295 138 DPTDFVLTL----GLDRSYQQDAQEFSKLFLS 165 (276)
Q Consensus 138 ~p~~~~~~l----~~~~~~QqDa~Efl~~ll~ 165 (276)
+|.+|...+ +...|+-.||+++|..|++
T Consensus 144 ~~~~fVa~~Ya~~~~~~G~~gDa~~~L~~ll~ 175 (320)
T PF08715_consen 144 DPAPFVAWCYASTNAKKGDPGDAEYVLSKLLK 175 (320)
T ss_dssp --HHHHHHHHHHTT--TTS---HHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH
Confidence 455555433 4778888999999999998
No 44
>PF14353 CpXC: CpXC protein
Probab=90.09 E-value=0.57 Score=35.41 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=28.3
Q ss_pred EEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCcee
Q psy2295 195 VTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQN 251 (276)
Q Consensus 195 ~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~ 251 (276)
+++|+.|++.... +.+..+.......+.+.| +..+... +.|++||....
T Consensus 1 ~itCP~C~~~~~~-~v~~~I~~~~~p~l~e~i---l~g~l~~----~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEF-EVWTSINADEDPELKEKI---LDGSLFS----FTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEE-EEEeEEcCcCCHHHHHHH---HcCCcCE----EECCCCCCcee
Confidence 3689999986532 233333333233343333 4444444 99999998754
No 45
>KOG3556|consensus
Probab=78.79 E-value=3.9 Score=38.04 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCcccccccCCcchhhHHHHHHhcCHHHHHHHh
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVL 91 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~ 91 (276)
+...|++-.-|.||++|.|=.+|.-......++
T Consensus 366 gk~kgiqgh~nscyldstlf~~f~f~sv~dS~l 398 (724)
T KOG3556|consen 366 GKIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTL 398 (724)
T ss_pred cccccccCCcchhhccccccccccccccccccc
Confidence 467888999999999999887776555444443
No 46
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=75.45 E-value=2.8 Score=27.34 Aligned_cols=34 Identities=24% Similarity=0.597 Sum_probs=26.1
Q ss_pred ccccCcCCCceeeEEEEEec--cCCceEEEEEecee
Q psy2295 240 QYFCNRCGKKQNAGRRIRLK--YLPKVLNLQLMRFV 273 (276)
Q Consensus 240 ~~~C~~C~~~~~a~k~~~i~--~lP~vL~i~L~Rf~ 273 (276)
.+.|++|+...-.++..... .+.+++=||.++|.
T Consensus 4 ~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 4 AFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred cccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 46699999876556655544 78899999999985
No 47
>KOG2906|consensus
Probab=74.55 E-value=8.7 Score=27.36 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=42.4
Q ss_pred eEEEEEEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCC
Q psy2295 190 GEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLP 262 (276)
Q Consensus 190 g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP 262 (276)
|.......|..|.++.......+.=..+..+.+++.|..--.-+.++. ..-.|++|+.....-.++.+.++-
T Consensus 16 g~~~~rf~C~tCpY~~~I~~ei~~r~~~~~Kevd~vlgg~~a~~nv~~-t~~~Cp~Cgh~rayF~qlQtRSAD 87 (105)
T KOG2906|consen 16 GESCNRFSCRTCPYVFPISREISSRKYPKLKEVDDVLGGDEAWENVDQ-TEATCPTCGHERAYFMQLQTRSAD 87 (105)
T ss_pred CCeEeeEEcCCCCceeeEeeeeeccccCchhhhhhhcCCcccccchhh-ccCcCCCCCCCceEEEEeeeccCC
Confidence 444677889999887643332222222225677776654222222221 136899999988777777777663
No 48
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=64.84 E-value=6.5 Score=25.87 Aligned_cols=33 Identities=27% Similarity=0.649 Sum_probs=21.4
Q ss_pred cccCcCCCceeeEEEEEe--ccCCceEEEEEecee
Q psy2295 241 YFCNRCGKKQNAGRRIRL--KYLPKVLNLQLMRFV 273 (276)
Q Consensus 241 ~~C~~C~~~~~a~k~~~i--~~lP~vL~i~L~Rf~ 273 (276)
|.|++|+...-..+.... ..+-+++-||.+||.
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~ 35 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFT 35 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEE
Confidence 689999876443333333 234567888888875
No 49
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=62.09 E-value=16 Score=21.62 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=10.6
Q ss_pred EEEEeCCCCCeeee
Q psy2295 194 YVTKCFACGNETDR 207 (276)
Q Consensus 194 ~~~~C~~C~~~s~~ 207 (276)
+..+|..||+....
T Consensus 4 Yey~C~~Cg~~fe~ 17 (42)
T PF09723_consen 4 YEYRCEECGHEFEV 17 (42)
T ss_pred EEEEeCCCCCEEEE
Confidence 57789999986543
No 50
>KOG1887|consensus
Probab=61.44 E-value=7 Score=38.38 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=69.6
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccC-----------------CcchhhhhhhccceEEEEEEEeCCCCCeeeeeec---c
Q psy2295 152 YQQDAQEFSKLFLSNFVEEKFRVQS-----------------LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEI---F 211 (276)
Q Consensus 152 ~QqDa~Efl~~ll~~~l~~~~~~~~-----------------~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~---f 211 (276)
.-.++.++|.-++. .+++...... .+...+++.++|+........|.+|+..+.-.+. +
T Consensus 548 ~~~~~S~lL~~ll~-~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~ 626 (806)
T KOG1887|consen 548 HEGVYSELLSDLLL-SLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYG 626 (806)
T ss_pred hhhhHHHHHHHHHh-hhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhh
Confidence 44678889999998 8887765432 2233578889999999999999999887643321 1
Q ss_pred eeeeecc---------cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEe
Q psy2295 212 YELVVNV---------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLM 270 (276)
Q Consensus 212 ~~l~l~i---------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~ 270 (276)
..+.... +.+.++.|..--...++.-| -.-.+||+.. --...|.+.|+|.+|.|.
T Consensus 627 ~~~~a~slr~~k~a~~n~~f~~ilk~i~m~~~m~cD--~~~gGCgk~n--~v~h~is~~P~vftIvle 690 (806)
T KOG1887|consen 627 IVIAADSLRQLKCAFQNITFEDILKNIRMNDKMLCD--KETGGCGKAN--LVHHILSPCPPVFTIVLE 690 (806)
T ss_pred hhccchhhhhHHHHhhhhhHHHHHHHhhhhhhhccc--ccCCCCcchh--hhhhhcCCCCCeeEeeee
Confidence 2222221 45666666652222222111 1122366543 344567889999999663
No 51
>smart00816 Amb_V_allergen Amb V Allergen. Amb V is an Ambrosia sp (ragweed) pollen allergen. Amb t V has been shown to contain a C-terminal helix as the major T cell epitope. Free sulphhydryl groups also play a major role in the T cell recognition of cross-reactivity T cell epitopes within these related allergens.
Probab=54.73 E-value=3.8 Score=23.98 Aligned_cols=16 Identities=38% Similarity=1.134 Sum_probs=12.4
Q ss_pred eeccCCcccc----cccccC
Q psy2295 7 FFCPNLILCI----ISSRNC 22 (276)
Q Consensus 7 ~~~~~~~~c~----~~~~nc 22 (276)
-|++|+..|- .|.+||
T Consensus 25 rYCpwqvVCYeS~~IC~knc 44 (45)
T smart00816 25 RYCPWQVVCYESKAICNKNC 44 (45)
T ss_pred ccCCceEEEeehHHHHhccC
Confidence 3889999996 666666
No 52
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=54.60 E-value=13 Score=27.14 Aligned_cols=52 Identities=27% Similarity=0.510 Sum_probs=31.4
Q ss_pred EEEeCCCCCeeeeeecceeeeecc-cccHHHHHH----Hhhcc-----ceecCCCccccCcCCCcee
Q psy2295 195 VTKCFACGNETDRSEIFYELVVNV-CKTLDESMR----EFLKE-----ELLEGDDQYFCNRCGKKQN 251 (276)
Q Consensus 195 ~~~C~~C~~~s~~~e~f~~l~l~i-~~sl~~~L~----~~~~~-----e~l~g~n~~~C~~C~~~~~ 251 (276)
.++| .||++--....-+-+...| ...-.+.+. ..+.+ ++.+ |+|+.||...+
T Consensus 24 ~vkc-~CGh~f~d~r~NwK~~alv~vRd~~E~~~~iYp~~~aPdp~w~~irE----yyCP~Cgt~le 85 (112)
T PF08882_consen 24 VVKC-DCGHEFCDARENWKLGALVYVRDPEEIHPEIYPFTMAPDPEWQVIRE----YYCPGCGTQLE 85 (112)
T ss_pred eeec-cCCCeecChhcChhhCcEEEecChHHhhhhhcccccCCCCCcEEEEE----EECCCCcceeE
Confidence 6788 9999865554555555555 333344432 23443 2345 99999997654
No 53
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=53.37 E-value=22 Score=28.11 Aligned_cols=42 Identities=24% Similarity=0.543 Sum_probs=26.1
Q ss_pred EEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCceeeE
Q psy2295 196 TKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAG 253 (276)
Q Consensus 196 ~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~ 253 (276)
..|+.||......- ....+| ||++-.+.. +.|+.||-+..-.
T Consensus 2 s~Cp~C~~~~~~~~--~~~~IP-----------~F~evii~s---f~C~~CGyk~~ev 43 (161)
T PF03367_consen 2 SLCPNCGENGTTRI--LLTDIP-----------YFKEVIIMS---FECEHCGYKNNEV 43 (161)
T ss_dssp EE-TTTSSCCEEEE--EEEEET-----------TTEEEEEEE---EE-TTT--EEEEE
T ss_pred CcCCCCCCCcEEEE--EEEcCC-----------CCceEEEEE---eECCCCCCEeeeE
Confidence 57999998754332 455555 688877774 8999999776433
No 54
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=51.85 E-value=17 Score=28.55 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=30.7
Q ss_pred EeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCC
Q psy2295 197 KCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGK 248 (276)
Q Consensus 197 ~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~ 248 (276)
-|..|+..-. .+.|..- +|...|-..++.|...+... +|.+||.
T Consensus 116 yc~~c~~~~~-e~~f~~~--d~~~~~~~~~~~f~~~~~~r-----tC~~Cg~ 159 (159)
T TIGR03037 116 FCPQCGHKLH-RAEVQLE--NIVTDLPPVFEHFYSNEDAR-----TCKNCGH 159 (159)
T ss_pred ECCCCCCeEE-EEEEEec--ChhhhhHHHHHHHhCChhhc-----cCCccCC
Confidence 4888866433 2223222 45677999999999998865 8999984
No 55
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=50.24 E-value=23 Score=18.98 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCcccCcHHHHHHh
Q psy2295 121 HLQMLFALMQHSNKLLVDPTDFVLTL 146 (276)
Q Consensus 121 ~l~~lf~~l~~~~~~~i~p~~~~~~l 146 (276)
.++.+|..+...+...|++.+|...+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 36788889888888889988887765
No 56
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=49.14 E-value=40 Score=25.69 Aligned_cols=50 Identities=30% Similarity=0.456 Sum_probs=26.6
Q ss_pred EEEEEEEeCCCCCeeeeee-cceeeeecccccHHHHHHHhhccceecCCCccccCcCCCc
Q psy2295 191 EYVYVTKCFACGNETDRSE-IFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKK 249 (276)
Q Consensus 191 ~~~~~~~C~~C~~~s~~~e-~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~ 249 (276)
...-...|..||+.....+ ++. | ..++... -.+.+|.... .+.|+.||..
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~-~----~~~~~~~--~~~~~~~~~~--~~~CP~Cgs~ 116 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKES-L----DEEIREA--IHFIPEVVHA--FLKCPKCGSR 116 (135)
T ss_pred ecceEEECCCCCCEEeccccccc-c----ccccccc--cccccccccc--CcCCcCCCCC
Confidence 4446789999997654331 111 0 1111111 1355555443 3679999975
No 57
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=46.10 E-value=23 Score=28.38 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=32.8
Q ss_pred EeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCcee
Q psy2295 197 KCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQN 251 (276)
Q Consensus 197 ~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~ 251 (276)
-|..|+..-. .+.|.. -+|...|-..++.|...|... +|.+||....
T Consensus 122 yc~~c~~~~~-e~~f~~--~d~~~~~~~~~~~f~~~~e~r-----tC~~CG~v~~ 168 (177)
T PRK13264 122 YCDECNHKVH-EVEVQL--TDIETDLPPVFAAFYASEELR-----TCDNCGTVHP 168 (177)
T ss_pred ECCCCCCeEE-EEEEEe--cChhhhhHHHHHHHhcCHhhc-----cCCcCCcccC
Confidence 4888876433 223332 344577999999999998875 8999997543
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=43.06 E-value=35 Score=18.29 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCcccCcHHHHHHh
Q psy2295 121 HLQMLFALMQHSNKLLVDPTDFVLTL 146 (276)
Q Consensus 121 ~l~~lf~~l~~~~~~~i~p~~~~~~l 146 (276)
+++.+|+.+.....+.|+..+|...+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 36778888888777888888777654
No 59
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.30 E-value=43 Score=25.22 Aligned_cols=94 Identities=18% Similarity=0.401 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEE--EEEEEeCCCCCeeeeeecceeeeecc-cccHHHHHHHhh
Q psy2295 154 QDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEY--VYVTKCFACGNETDRSEIFYELVVNV-CKTLDESMREFL 230 (276)
Q Consensus 154 qDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~--~~~~~C~~C~~~s~~~e~f~~l~l~i-~~sl~~~L~~~~ 230 (276)
.|-.-|+..|- .|.+...- .++-.-.+-..+|-.+- ...++| +||+..-.++.-+-|..+| ..+-++.|+.-.
T Consensus 30 kdhdrf~kyla--vlqdrv~~-~dpillpvg~hlfi~qs~~~rv~rc-ecghsf~d~r~nwkl~a~i~vrdtee~lreiy 105 (165)
T COG4647 30 KDHDRFFKYLA--VLQDRVDW-DDPILLPVGDHLFICQSAQKRVIRC-ECGHSFGDYRENWKLHANIYVRDTEEKLREIY 105 (165)
T ss_pred ccHHHHHHHHH--HHHhhccc-CCCeeeecCCcEEEEecccccEEEE-eccccccChhhCceeeeEEEEcchHHHHHHhC
Confidence 34455555443 45544321 11211122344553332 236778 8999877777888888888 566666666543
Q ss_pred ccceecCC-----CccccCcCCCcee
Q psy2295 231 KEELLEGD-----DQYFCNRCGKKQN 251 (276)
Q Consensus 231 ~~e~l~g~-----n~~~C~~C~~~~~ 251 (276)
-...+..- -.|.|+.||....
T Consensus 106 p~s~ipdp~wme~reficpecg~l~e 131 (165)
T COG4647 106 PKSDIPDPQWMEIREFICPECGILHE 131 (165)
T ss_pred cccCCCCchHHHHHHhhCccccceee
Confidence 22211111 1389999997654
No 60
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=39.60 E-value=15 Score=19.17 Aligned_cols=13 Identities=46% Similarity=1.134 Sum_probs=10.1
Q ss_pred CCCccccCcCCCc
Q psy2295 237 GDDQYFCNRCGKK 249 (276)
Q Consensus 237 g~n~~~C~~C~~~ 249 (276)
|+..|.|+.|++.
T Consensus 11 ~~k~~~C~~C~k~ 23 (26)
T PF13465_consen 11 GEKPYKCPYCGKS 23 (26)
T ss_dssp SSSSEEESSSSEE
T ss_pred CCCCCCCCCCcCe
Confidence 5557999999864
No 61
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=39.21 E-value=23 Score=28.86 Aligned_cols=41 Identities=24% Similarity=0.624 Sum_probs=26.4
Q ss_pred EEeCCCCCeeeeeecceeee-ecccccHHHHHHHhhccceecCCCccccCcCCCceee
Q psy2295 196 TKCFACGNETDRSEIFYELV-VNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNA 252 (276)
Q Consensus 196 ~~C~~C~~~s~~~e~f~~l~-l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a 252 (276)
+.|+.||...... ..... +| ||++-.+.. +.|+.||-+..-
T Consensus 1 ~~Cp~C~~~~~~~--~~~~~~IP-----------~F~evii~s---f~C~~CGyr~~e 42 (192)
T TIGR00310 1 IDCPSCGGECETV--MKTVNDIP-----------YFGEVLETS---TICEHCGYRSND 42 (192)
T ss_pred CcCCCCCCCCEEE--EEEEcCCC-----------CcceEEEEE---EECCCCCCccce
Confidence 3599998753322 22333 45 677777764 999999977543
No 62
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=36.61 E-value=30 Score=27.26 Aligned_cols=39 Identities=21% Similarity=0.656 Sum_probs=26.3
Q ss_pred EeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCcee
Q psy2295 197 KCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQN 251 (276)
Q Consensus 197 ~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~ 251 (276)
.|+.||.... .......+| ||++-.+.. +.|+.||-+..
T Consensus 2 ~Cp~C~~~~~--~~~~~~~IP-----------~F~evii~s---f~C~~CGyk~~ 40 (160)
T smart00709 2 DCPSCGGNGT--TRMLLTSIP-----------YFREVIIMS---FECEHCGYRNN 40 (160)
T ss_pred cCCCCCCCCE--EEEEEecCC-----------CcceEEEEE---EECCCCCCccc
Confidence 4999987643 333444445 677777763 99999997643
No 63
>KOG1867|consensus
Probab=36.56 E-value=24 Score=33.22 Aligned_cols=34 Identities=26% Similarity=0.117 Sum_probs=28.6
Q ss_pred CCCCcccccccCCcchhhHHHHHHhcCHHHHHHH
Q psy2295 57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAV 90 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l 90 (276)
......|+.+.+++|+||+.+|.++.++.|.-..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~ 106 (492)
T KOG1867|consen 73 HKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDA 106 (492)
T ss_pred ccccccccccccccceeehhhheeccCCcEeecc
Confidence 4557889999999999999999999999764433
No 64
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=36.53 E-value=52 Score=16.85 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCCcccCcHHHHH
Q psy2295 122 LQMLFALMQHSNKLLVDPTDFVL 144 (276)
Q Consensus 122 l~~lf~~l~~~~~~~i~p~~~~~ 144 (276)
|+..|..+.....+.|+..+|..
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 45677888777777888777765
No 65
>PF03913 Amb_V_allergen: Amb V Allergen; InterPro: IPR005611 Amb V is an Ambrosia sp (ragweed) pollen allergen. Amb t V has been shown to contain a C-terminal helix as the major T cell epitope. Free sulphydryl groups also play a major role in the T cell recognition of cross-reactivity T cell epitopes within these related allergens [].; PDB: 2BBG_A 3BBG_A 1BBG_A.
Probab=35.63 E-value=4.5 Score=23.54 Aligned_cols=15 Identities=47% Similarity=1.309 Sum_probs=6.6
Q ss_pred eccCCcccc----cccccC
Q psy2295 8 FCPNLILCI----ISSRNC 22 (276)
Q Consensus 8 ~~~~~~~c~----~~~~nc 22 (276)
|+.|+..|- .|.+||
T Consensus 25 YCpwqvVCYeS~~IC~knc 43 (44)
T PF03913_consen 25 YCPWQVVCYESSEICSKNC 43 (44)
T ss_dssp S-----EEESSHHHHHHHH
T ss_pred cccceeeeechHHHHhccC
Confidence 788999995 555555
No 66
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=34.13 E-value=48 Score=26.26 Aligned_cols=39 Identities=26% Similarity=0.802 Sum_probs=24.0
Q ss_pred eCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCcee
Q psy2295 198 CFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQN 251 (276)
Q Consensus 198 C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~ 251 (276)
|+.||....+. ......+| ||++-.+.. +.|++||-+..
T Consensus 1 CP~Cg~~~~~~-~~~~~~IP-----------~F~evii~s---f~C~~CGyr~~ 39 (163)
T TIGR00340 1 CPVCGSRTLKA-VTYDYDIP-----------YFGKIMLST---YICEKCGYRST 39 (163)
T ss_pred CCCCCCcceEe-eeEeccCC-----------CcceEEEEE---EECCCCCCchh
Confidence 88898753222 01223333 677777763 99999997654
No 67
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=33.85 E-value=52 Score=26.83 Aligned_cols=46 Identities=24% Similarity=0.574 Sum_probs=29.1
Q ss_pred EEEEEEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCceee
Q psy2295 191 EYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNA 252 (276)
Q Consensus 191 ~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a 252 (276)
.....+.|+.||..-... .+...+| ||.+-.+.. +.|++||-+..-
T Consensus 10 ~~~~~~~CPvCg~~l~~~--~~~~~IP-----------yFG~V~i~t---~~C~~CgYR~~D 55 (201)
T COG1779 10 EFETRIDCPVCGGTLKAH--MYLYDIP-----------YFGEVLIST---GVCERCGYRSTD 55 (201)
T ss_pred eeeeeecCCcccceeeEE--EeeecCC-----------ccceEEEEE---EEccccCCcccc
Confidence 345678899999833322 2333334 566666653 899999976543
No 68
>PRK11032 hypothetical protein; Provisional
Probab=33.67 E-value=41 Score=26.54 Aligned_cols=35 Identities=37% Similarity=0.719 Sum_probs=25.0
Q ss_pred ceEEE--EEEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCce
Q psy2295 189 SGEYV--YVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQ 250 (276)
Q Consensus 189 ~g~~~--~~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~ 250 (276)
.|++. -..+|.+||+... +..++.|. .|++|+...
T Consensus 116 sGEvvg~G~LvC~~Cg~~~~----------------------~~~p~~i~-----pCp~C~~~~ 152 (160)
T PRK11032 116 SGEVVGLGNLVCEKCHHHLA----------------------FYTPEVLP-----LCPKCGHDQ 152 (160)
T ss_pred cceeeecceEEecCCCCEEE----------------------ecCCCcCC-----CCCCCCCCe
Confidence 45554 3678999999763 45666776 799998764
No 69
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=33.19 E-value=22 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=15.2
Q ss_pred EEEEEeccCCceEEEEEeceeecC
Q psy2295 253 GRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 253 ~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
-.+..+.+||.+=-++=-||.|+|
T Consensus 30 GlTykVs~lPd~srf~N~rF~~er 53 (67)
T PF12218_consen 30 GLTYKVSSLPDISRFKNARFVYER 53 (67)
T ss_dssp T-EEEESS---GGGEES-EEEE-S
T ss_pred CceEEEeeCccHHhhccceEEEee
Confidence 456788999999888888999987
No 70
>KOG2463|consensus
Probab=32.96 E-value=61 Score=28.62 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=25.3
Q ss_pred ccccCcCCCceeeEEEEEeccCCceEEEEEe-ceeecC
Q psy2295 240 QYFCNRCGKKQNAGRRIRLKYLPKVLNLQLM-RFVFDR 276 (276)
Q Consensus 240 ~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~-Rf~~dr 276 (276)
+..|+.||.++...-..++..= --+..|++ ||.|++
T Consensus 257 k~FCp~CG~~TL~K~aVsv~~d-G~~~~h~k~r~~~n~ 293 (376)
T KOG2463|consen 257 KDFCPSCGHKTLTKCAVSVDED-GNGQTHFKKRFQWNN 293 (376)
T ss_pred hhcccccCCCeeeEEEEEecCC-CceeEEeeccccccc
Confidence 4689999998654444555443 56788888 998864
No 71
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=32.27 E-value=68 Score=19.00 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=21.9
Q ss_pred cccCcCCCcee---eEEEEEeccC-----CceEEEEEeceee
Q psy2295 241 YFCNRCGKKQN---AGRRIRLKYL-----PKVLNLQLMRFVF 274 (276)
Q Consensus 241 ~~C~~C~~~~~---a~k~~~i~~l-----P~vL~i~L~Rf~~ 274 (276)
..|+.||.... ..+...+..+ |-+|.+...||.-
T Consensus 3 ~~Cp~Cg~~~~~~~g~~~r~i~~l~~~~~~~~L~i~~~R~~C 44 (47)
T PF14690_consen 3 PRCPHCGSPSVHRHGYKTRRIRHLPIGGRPVYLRIRKRRYRC 44 (47)
T ss_pred ccCCCcCCCceECCceEEEEEeecccCCEEEEEEEEeEEEEC
Confidence 47999986542 2344444444 5689999999863
No 72
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=30.94 E-value=74 Score=20.15 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCcccCcHHHHHHhCCC--CCccccHHHHHHHHHHHHHH
Q psy2295 122 LQMLFALMQHSNKLLVDPTDFVLTLGLD--RSYQQDAQEFSKLFLSNFVE 169 (276)
Q Consensus 122 l~~lf~~l~~~~~~~i~p~~~~~~l~~~--~~~QqDa~Efl~~ll~~~l~ 169 (276)
|+.+|..+.....+.|+..+|...+.-. ...++.+.+.+..++. .+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~-~~D 50 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFR-EFD 50 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHH-HhC
Confidence 6788999988888899999999888621 1225556666666666 443
No 73
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=30.83 E-value=57 Score=25.58 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCc
Q psy2295 196 TKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKK 249 (276)
Q Consensus 196 ~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~ 249 (276)
..|+.|+... |..++++. .+.|+.||..
T Consensus 110 Y~Cp~c~~r~---------------tf~eA~~~-----------~F~Cp~Cg~~ 137 (158)
T TIGR00373 110 FICPNMCVRF---------------TFNEAMEL-----------NFTCPRCGAM 137 (158)
T ss_pred EECCCCCcEe---------------eHHHHHHc-----------CCcCCCCCCE
Confidence 5799998543 56677751 3999999975
No 74
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=28.57 E-value=30 Score=17.94 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=7.2
Q ss_pred ccccCcCCC
Q psy2295 240 QYFCNRCGK 248 (276)
Q Consensus 240 ~~~C~~C~~ 248 (276)
.|.|++||.
T Consensus 16 ~f~CPnCG~ 24 (24)
T PF07754_consen 16 PFPCPNCGF 24 (24)
T ss_pred eEeCCCCCC
Confidence 588999974
No 75
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=28.10 E-value=60 Score=15.59 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCCcccCcHHHHHH
Q psy2295 122 LQMLFALMQHSNKLLVDPTDFVLT 145 (276)
Q Consensus 122 l~~lf~~l~~~~~~~i~p~~~~~~ 145 (276)
++.+|..+.....+.++..+|...
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~ 25 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDL 25 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHH
Confidence 445666665555455666655544
No 76
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.91 E-value=81 Score=25.32 Aligned_cols=29 Identities=31% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCc
Q psy2295 195 VTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKK 249 (276)
Q Consensus 195 ~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~ 249 (276)
...|+.|+... |..++++ +.|.|+.||..
T Consensus 117 ~Y~Cp~C~~ry---------------tf~eA~~-----------~~F~Cp~Cg~~ 145 (178)
T PRK06266 117 FFFCPNCHIRF---------------TFDEAME-----------YGFRCPQCGEM 145 (178)
T ss_pred EEECCCCCcEE---------------eHHHHhh-----------cCCcCCCCCCC
Confidence 35799998654 4456653 14999999975
No 77
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=24.40 E-value=80 Score=18.01 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=8.8
Q ss_pred hccceecCCCccccCcCCC
Q psy2295 230 LKEELLEGDDQYFCNRCGK 248 (276)
Q Consensus 230 ~~~e~l~g~n~~~C~~C~~ 248 (276)
+.+-..+ -.|+.||.
T Consensus 15 ~~pP~~~----~~Cd~cg~ 29 (36)
T PF05191_consen 15 FNPPKVE----GVCDNCGG 29 (36)
T ss_dssp TB--SST----TBCTTTTE
T ss_pred cCCCCCC----CccCCCCC
Confidence 4554555 37898886
No 78
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.68 E-value=44 Score=34.17 Aligned_cols=18 Identities=17% Similarity=0.584 Sum_probs=11.8
Q ss_pred ccccCcCCCceeeEEEEE
Q psy2295 240 QYFCNRCGKKQNAGRRIR 257 (276)
Q Consensus 240 ~~~C~~C~~~~~a~k~~~ 257 (276)
.|.|++|+....+..+..
T Consensus 663 ~y~CPKCG~El~~~s~~~ 680 (1121)
T PRK04023 663 EDECEKCGREPTPYSKRK 680 (1121)
T ss_pred CCcCCCCCCCCCccceEE
Confidence 477888887765544444
No 79
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=21.58 E-value=1.2e+02 Score=18.93 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=5.6
Q ss_pred ccccHHHHHHHH
Q psy2295 152 YQQDAQEFSKLF 163 (276)
Q Consensus 152 ~QqDa~Efl~~l 163 (276)
.+=|..||...+
T Consensus 48 g~i~~~ef~~~~ 59 (67)
T cd00052 48 GKLDKEEFAIAM 59 (67)
T ss_pred CcCCHHHHHHHH
Confidence 344555554433
No 80
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=21.26 E-value=49 Score=17.13 Aligned_cols=10 Identities=40% Similarity=1.288 Sum_probs=7.4
Q ss_pred ccccCcCCCc
Q psy2295 240 QYFCNRCGKK 249 (276)
Q Consensus 240 ~~~C~~C~~~ 249 (276)
+|+|+.|++.
T Consensus 1 q~~C~~C~k~ 10 (27)
T PF12171_consen 1 QFYCDACDKY 10 (27)
T ss_dssp -CBBTTTTBB
T ss_pred CCCcccCCCC
Confidence 4889999864
No 81
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=20.37 E-value=39 Score=16.48 Aligned_cols=9 Identities=56% Similarity=1.261 Sum_probs=6.8
Q ss_pred cccCcCCCc
Q psy2295 241 YFCNRCGKK 249 (276)
Q Consensus 241 ~~C~~C~~~ 249 (276)
|.|+.|++.
T Consensus 1 y~C~~C~~~ 9 (23)
T PF00096_consen 1 YKCPICGKS 9 (23)
T ss_dssp EEETTTTEE
T ss_pred CCCCCCCCc
Confidence 678999764
Done!