Query psy2295
Match_columns 276
No_of_seqs 211 out of 1408
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 21:03:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.3E-48 4.4E-53 349.7 20.9 212 57-276 4-267 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 2.7E-47 9.1E-52 344.3 19.0 210 58-275 59-303 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 4.2E-47 1.4E-51 336.9 19.7 212 55-276 3-252 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 7E-47 2.4E-51 336.4 18.1 207 59-276 1-262 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 1.4E-45 4.8E-50 328.3 22.7 199 57-275 2-205 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 4E-44 1.4E-48 324.3 17.0 206 55-276 8-245 (404)
7 2f1z_A Ubiquitin carboxyl-term 100.0 3.3E-43 1.1E-47 328.0 21.9 202 55-276 169-375 (522)
8 1vjv_A Ubiquitin carboxyl-term 100.0 9.7E-43 3.3E-47 316.4 17.5 205 53-276 16-237 (415)
9 3mhs_A Ubiquitin carboxyl-term 100.0 3.8E-42 1.3E-46 317.7 18.6 208 57-276 137-374 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 1.1E-41 3.7E-46 331.5 19.3 201 56-275 339-598 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.8 3.7E-21 1.3E-25 167.2 6.0 97 59-171 7-114 (374)
12 3mp2_A Non-structural protein 92.6 0.32 1.1E-05 38.9 6.8 85 58-203 10-98 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 90.7 0.67 2.3E-05 39.4 7.1 71 59-165 100-175 (315)
14 1qmy_A Protease, leader protea 88.7 0.13 4.3E-06 38.1 1.0 36 58-93 10-46 (167)
15 3a43_A HYPD, hydrogenase nicke 49.5 24 0.00083 25.9 4.7 52 191-250 66-117 (139)
16 2lv7_A Calcium-binding protein 48.5 23 0.0008 24.1 4.2 32 116-147 32-63 (100)
17 1zvf_A 3-hydroxyanthranilate 3 44.2 9.9 0.00034 29.3 1.8 46 197-250 126-171 (176)
18 1qyp_A RNA polymerase II; tran 43.9 9.5 0.00032 23.3 1.4 40 193-249 13-52 (57)
19 1yfu_A 3-hydroxyanthranilate-3 38.1 10 0.00034 29.2 1.0 46 197-250 124-169 (174)
20 2joj_A Centrin protein; N-term 38.0 55 0.0019 20.0 4.6 29 119-147 6-34 (77)
21 2con_A RUH-035 protein, NIN on 35.5 17 0.00057 24.1 1.6 35 240-275 30-66 (79)
22 1avs_A Troponin C; muscle cont 31.1 85 0.0029 20.0 4.8 30 118-147 18-47 (90)
23 1tiz_A Calmodulin-related prot 28.5 73 0.0025 18.6 3.9 25 122-146 3-27 (67)
24 1p7a_A BF3, BKLF, kruppel-like 26.6 27 0.00092 17.9 1.3 13 237-249 8-20 (37)
25 2ktg_A Calmodulin, putative; e 26.6 82 0.0028 19.7 4.0 31 117-147 11-41 (85)
26 2elm_A Zinc finger protein 406 26.4 25 0.00084 18.3 1.1 13 237-249 6-18 (37)
27 2kz2_A Calmodulin, CAM; TR2C, 25.9 1.3E+02 0.0043 19.6 5.0 29 119-147 28-56 (94)
28 1fv5_A First zinc finger of U- 25.8 21 0.00073 19.3 0.7 14 236-249 4-17 (36)
29 1srk_A Zinc finger protein ZFP 25.6 28 0.00097 17.5 1.2 13 237-249 4-16 (35)
30 2elx_A Zinc finger protein 406 25.2 29 0.00098 17.3 1.2 12 238-249 5-16 (35)
31 3li6_A Calcium-binding protein 24.2 64 0.0022 18.9 3.0 20 125-144 5-24 (66)
32 2kvh_A Zinc finger and BTB dom 23.8 30 0.001 16.0 1.1 10 240-249 3-12 (27)
33 2drp_A Protein (tramtrack DNA- 23.7 67 0.0023 19.0 3.0 13 237-249 37-49 (66)
34 2pmy_A RAS and EF-hand domain- 23.4 74 0.0025 20.6 3.3 31 117-147 24-54 (91)
35 1c07_A Protein (epidermal grow 23.3 1.1E+02 0.0038 20.1 4.3 30 118-147 8-37 (95)
36 2kvf_A Zinc finger and BTB dom 23.3 32 0.0011 16.0 1.1 10 240-249 3-12 (28)
37 1iq3_A Ralbp1-interacting prot 23.3 1.5E+02 0.0051 20.3 5.1 29 119-147 21-49 (110)
38 2i5o_A DNA polymerase ETA; zin 23.0 32 0.0011 19.3 1.1 13 238-250 7-19 (39)
39 2qkd_A Zinc finger protein ZPR 22.6 67 0.0023 28.2 3.6 49 190-254 215-263 (404)
40 2kn2_A Calmodulin; S MAPK phos 22.2 1.6E+02 0.0053 18.6 5.1 30 118-147 7-36 (92)
41 2elr_A Zinc finger protein 406 22.0 39 0.0013 17.0 1.4 13 237-249 6-18 (36)
42 2ctd_A Zinc finger protein 512 21.5 64 0.0022 21.5 2.7 36 196-249 35-71 (96)
43 1znf_A 31ST zinc finger from X 21.0 35 0.0012 15.6 1.0 9 241-249 2-10 (27)
44 2elt_A Zinc finger protein 406 20.9 38 0.0013 17.0 1.2 12 238-249 7-18 (36)
45 1wlz_A DJBP, CAP-binding prote 20.8 1.8E+02 0.0061 18.9 5.0 27 120-146 24-50 (105)
46 3c5t_B Exendin-4, exenatide; l 20.8 49 0.0017 17.5 1.4 12 154-165 9-20 (31)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=349.74 Aligned_cols=212 Identities=25% Similarity=0.364 Sum_probs=182.4
Q ss_pred CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295 57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL 136 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~ 136 (276)
..++++||.|+||||||||+||+|+++|+|+++++.............. .....+..+|+.||..|+.+....
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~L~~~l~~~~~~~ 76 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPL-------GMKGEIAEAYAELIKQMWSGRDAH 76 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTT-------SCTTHHHHHHHHHHHHHTSSSCSE
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCC-------CcchHHHHHHHHHHHHHHcCCCCC
Confidence 4578999999999999999999999999999999976433221110000 012478999999999999988889
Q ss_pred cCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------chhhhhh
Q psy2295 137 VDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------HIKNFIK 185 (276)
Q Consensus 137 i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------~~~~~i~ 185 (276)
++|..|+..++ |.+++|||||||+.+||+ .|++++...... ...++|.
T Consensus 77 i~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd-~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~ 155 (367)
T 2y6e_A 77 VAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLD-GLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIV 155 (367)
T ss_dssp ECCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHH-HHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred cCHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHH-HHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccc
Confidence 99999999886 889999999999999999 999987542211 0236799
Q ss_pred hccceEEEEEEEeCCCCCeeeeeecceeeeeccc---------------------ccHHHHHHHhhccceecCCCccccC
Q psy2295 186 DYFSGEYVYVTKCFACGNETDRSEIFYELVVNVC---------------------KTLDESMREFLKEELLEGDDQYFCN 244 (276)
Q Consensus 186 ~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~---------------------~sl~~~L~~~~~~e~l~g~n~~~C~ 244 (276)
++|+|++.+.++|..|++.+.+.|+|+.|+|+|. .+|+++|+.|+++|.++|+|+|+|+
T Consensus 156 ~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~ 235 (367)
T 2y6e_A 156 DTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCP 235 (367)
T ss_dssp HHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEET
T ss_pred cccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCC
Confidence 9999999999999999999999999999999981 4899999999999999999999999
Q ss_pred cCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 245 RCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 245 ~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
+|++++.|+|+..|.++|+||+|||+||.|++
T Consensus 236 ~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~ 267 (367)
T 2y6e_A 236 NCKKHQQATKKFDLWSLPKILVVHLKRFSYNR 267 (367)
T ss_dssp TTTEEECCEEEEEEEECCSEEEEEEECEEECS
T ss_pred CCCCCceEEEEEEEecCCcEEEEEEeCeeecC
Confidence 99999999999999999999999999999973
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.7e-47 Score=344.29 Aligned_cols=210 Identities=25% Similarity=0.454 Sum_probs=181.6
Q ss_pred CCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCccc
Q psy2295 58 PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV 137 (276)
Q Consensus 58 ~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i 137 (276)
.++++||.|+||||||||+||+|+++|+|+++++............ .. .....+..+++.+++.||.+....+
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~--~~-----~~~~~l~~~~~~l~~~l~~~~~~~i 131 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN--LL-----GHKGEVAEEFGIIMKALWTGQYRYI 131 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTC--TT-----SCTTHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccC--CC-----CcccHHHHHHHHHHHHHHcCCCceE
Confidence 4689999999999999999999999999999998754321110000 00 0124688899999999999888899
Q ss_pred CcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------chhhhhhh
Q psy2295 138 DPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------HIKNFIKD 186 (276)
Q Consensus 138 ~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------~~~~~i~~ 186 (276)
+|..|+.+++ |.+++|||||||+.+||+ .|++++...... ...++|.+
T Consensus 132 ~P~~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd-~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~ 210 (396)
T 2gfo_A 132 SPKDFKITIGKINDQFAGYSQQDSQELLLFLMD-GLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVA 210 (396)
T ss_dssp CCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHH-HHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred CHHHHHHHHHHhchhhcCCCCCChHHHHHHHHH-HHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccch
Confidence 9999999885 889999999999999999 999988643211 12467999
Q ss_pred ccceEEEEEEEeCCCCCeeeeeecceeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCC
Q psy2295 187 YFSGEYVYVTKCFACGNETDRSEIFYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLP 262 (276)
Q Consensus 187 ~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP 262 (276)
+|+|++.+.++|..|++++.+.|+|+.|+|+| ..+|+++|+.|+++|.++|+|+|+|++|+.++.|.|+..|.++|
T Consensus 211 lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP 290 (396)
T 2gfo_A 211 LFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLP 290 (396)
T ss_dssp HHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECC
T ss_pred hhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCC
Confidence 99999999999999999999999999999999 35999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeceeec
Q psy2295 263 KVLNLQLMRFVFD 275 (276)
Q Consensus 263 ~vL~i~L~Rf~~d 275 (276)
+||+|||+||.||
T Consensus 291 ~vLiihLkRF~~~ 303 (396)
T 2gfo_A 291 PVLLVHLKRFSYD 303 (396)
T ss_dssp SEEEEEECCEEEC
T ss_pred cEEEEEecceecc
Confidence 9999999999997
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=4.2e-47 Score=336.93 Aligned_cols=212 Identities=27% Similarity=0.447 Sum_probs=182.4
Q ss_pred cCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHh-cCC
Q psy2295 55 LRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQ-HSN 133 (276)
Q Consensus 55 ~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~-~~~ 133 (276)
.+..++++||.|+||||||||+||+|+++|+||++++........... ......+..+|+.||..|+ .+.
T Consensus 3 sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~---------~~~~~~l~~~l~~l~~~l~~~~~ 73 (348)
T 3nhe_A 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG---------SNAHTALVEEFAKLIQTIWTSSP 73 (348)
T ss_dssp ---CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS---------CCTTHHHHHHHHHHHHHHTTCCT
T ss_pred CCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC---------CCcccHHHHHHHHHHHHHHcCCC
Confidence 456789999999999999999999999999999999875433221110 1114679999999999999 566
Q ss_pred CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------chhh
Q psy2295 134 KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------HIKN 182 (276)
Q Consensus 134 ~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------~~~~ 182 (276)
...++|..|+..++ |.++.|||||||+.+||+ .|++++...... ...+
T Consensus 74 ~~~~~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd-~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (348)
T 3nhe_A 74 NDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLD-GLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDS 152 (348)
T ss_dssp TCEECCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHH-HHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCC
T ss_pred CCccCHHHHHHHHHHhhhhhCCCCccCHHHHHHHHHH-HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCC
Confidence 78999999999986 889999999999999999 999998542211 1135
Q ss_pred hhhhccceEEEEEEEeCCCCCeeeeeecceeeeeccc------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEE
Q psy2295 183 FIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVC------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRI 256 (276)
Q Consensus 183 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~ 256 (276)
+|.++|.|++.+.++|..|++.+.+.|+|+.|+|+|. .+|+++|+.|+++|.++|+|+|.|++|+.++.+.|+.
T Consensus 153 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~ 232 (348)
T 3nhe_A 153 RIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKF 232 (348)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEE
T ss_pred ccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEE
Confidence 6999999999999999999999999999999999992 4999999999999999999999999999999999999
Q ss_pred EeccCCceEEEEEeceeecC
Q psy2295 257 RLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 257 ~i~~lP~vL~i~L~Rf~~dr 276 (276)
.|.++|+||+|||+||.|++
T Consensus 233 ~i~~lP~vL~i~lkRf~~~~ 252 (348)
T 3nhe_A 233 SIQRFPKILVLHLKRFSESR 252 (348)
T ss_dssp EEEECCSEEEEEECCBCCCS
T ss_pred EeecCCceEEEEEEcccccC
Confidence 99999999999999999863
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=7e-47 Score=336.39 Aligned_cols=207 Identities=29% Similarity=0.476 Sum_probs=177.3
Q ss_pred CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC-ccc
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK-LLV 137 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~-~~i 137 (276)
+|++||.|+||||||||+||+|+++|+||++++.......... ......+..+|+.||..|+.+.. ..+
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~----------~~~~~~l~~~l~~l~~~l~~~~~~~~v 70 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG----------GGRAQELTEAFADVIGALWHPDSCEAV 70 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC----------------CHHHHHHHHHHHHTSSCSSCCCB
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC----------CCchhHHHHHHHHHHHHHhcCCCCCcc
Confidence 5799999999999999999999999999999987533211100 00124799999999999998754 689
Q ss_pred CcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc----------------------------------
Q psy2295 138 DPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP---------------------------------- 178 (276)
Q Consensus 138 ~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~---------------------------------- 178 (276)
+|..|+..++ |.++.|||||||+.+||+ .|++++......
T Consensus 71 ~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd-~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T 3i3t_A 71 NPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLME-RLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANL 149 (355)
T ss_dssp CCHHHHHHHHHHCGGGCSSCCCBHHHHHHHHHH-HHHHHHCCC----------------------------CCHHHHHHH
T ss_pred cHHHHHHHHHHhChhhCCCCccCHHHHHHHHHH-HHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHH
Confidence 9999999986 889999999999999999 999998643211
Q ss_pred -------chhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeeccc--------ccHHHHHHHhhccceecCCCcccc
Q psy2295 179 -------HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVC--------KTLDESMREFLKEELLEGDDQYFC 243 (276)
Q Consensus 179 -------~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~--------~sl~~~L~~~~~~e~l~g~n~~~C 243 (276)
...++|.++|.|++.+.++|..|++.+.+.|+|+.|+|+|. .+|+++|+.|+++|.++|+|+|.|
T Consensus 150 ~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C 229 (355)
T 3i3t_A 150 MWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVC 229 (355)
T ss_dssp HHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCC
T ss_pred HHHHhhhccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeC
Confidence 01356999999999999999999999999999999999992 399999999999999999999999
Q ss_pred CcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 244 NRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 244 ~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
++|++++.|+|+..|.++|+||+|||+||.|++
T Consensus 230 ~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~ 262 (355)
T 3i3t_A 230 DRCRQKTRSTKKLTVQRFPRILVLHLNRFSASR 262 (355)
T ss_dssp SSSCCCCCEEEEEEEEECCSEEEEEECCEECCS
T ss_pred CCCCCccceEEEEEcccCChheEEEhhheecCC
Confidence 999999999999999999999999999999873
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.4e-45 Score=328.34 Aligned_cols=199 Identities=35% Similarity=0.564 Sum_probs=176.1
Q ss_pred CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295 57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL 136 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~ 136 (276)
+.++++||.|+||||||||+||+|+++|+||++++........ ...++..+|+.+|..|+.+. .+
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~--------------~~~~~~~~l~~lf~~l~~~~-~~ 66 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDD--------------SSKSVPLALQRVFYELQHSD-KP 66 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSC--------------TTTCHHHHHHHHHHHHHHCS-SC
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCc--------------ccccHHHHHHHHHHHHhhcC-CC
Confidence 4578999999999999999999999999999999875322110 12468899999999999876 57
Q ss_pred cCcHHHHHHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeeccee
Q psy2295 137 VDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYE 213 (276)
Q Consensus 137 i~p~~~~~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~ 213 (276)
++|..|+..++ |.++.|||||||+.+||+ .|++++... ...++|.++|+|++.+.++|..|++.+.+.|+|+.
T Consensus 67 ~~~~~l~~~~~~~~~~~~~QqDA~EFl~~LLd-~L~~~~~~~---~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~ 142 (353)
T 1nb8_A 67 VGTKKLTKSFGWETLDSFMQHDVQELCRVLLD-NVENKMKGT---CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYD 142 (353)
T ss_dssp BCCHHHHHHHTCCBTTTTTTSCHHHHHHHHHH-HHHHHTTTS---TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESC
T ss_pred CCCHHHHhhcCCCCCCcccchhHHHHHHHHHH-HHHHHhcCC---CccchhhhhceeEEEEEEEeccCCCeeceeeeeEE
Confidence 89999999886 778999999999999999 999987543 23468999999999999999999999999999999
Q ss_pred eeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 214 LVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 214 l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
|+|+| ..+|.++|+.|+.+|.++|+|+|.|+.|+ .+.|.|+..|.++|+||+|||+||.||
T Consensus 143 LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~ 205 (353)
T 1nb8_A 143 IQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYD 205 (353)
T ss_dssp EEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--
T ss_pred EEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEe
Confidence 99999 67999999999999999999999999996 678999999999999999999999997
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=4e-44 Score=324.31 Aligned_cols=206 Identities=21% Similarity=0.272 Sum_probs=172.2
Q ss_pred cCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q psy2295 55 LRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK 134 (276)
Q Consensus 55 ~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~ 134 (276)
.+....++||.|+||||||||+||+|+++|+||++++.+......... .....++.++|+.||..|+.+.
T Consensus 8 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~l~~~l~~lf~~l~~~~- 77 (404)
T 2ayn_A 8 ASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGE---------MASAQYITAALRDLFDSMDKTS- 77 (404)
T ss_dssp ---CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC---------------CHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCC---------CCcccHHHHHHHHHHHHHhcCC-
Confidence 335678999999999999999999999999999999987544111000 0113679999999999999876
Q ss_pred cccCcHHHHHHhC-----CC------CCccccHHHHHHHHHHHHHHHHhhccCC----------------cchhhhhhhc
Q psy2295 135 LLVDPTDFVLTLG-----LD------RSYQQDAQEFSKLFLSNFVEEKFRVQSL----------------PHIKNFIKDY 187 (276)
Q Consensus 135 ~~i~p~~~~~~l~-----~~------~~~QqDa~Efl~~ll~~~l~~~~~~~~~----------------~~~~~~i~~~ 187 (276)
..++|..|+..++ |. ++.|||||||+.+||+ .|++++....+ ....++|.++
T Consensus 78 ~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd-~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~ 156 (404)
T 2ayn_A 78 SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMR-VLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQF 156 (404)
T ss_dssp SEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHH-HHHTTSCCCCCC------------------CCHHHHH
T ss_pred CcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHH-HHHHHhccccCCcccccchhhhhhhhccccCchhhhh
Confidence 8899999999875 44 5899999999999999 99999865331 1234689999
Q ss_pred cceEEEEEEEeCCCCCee--eeeecceeeeecc---cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCC
Q psy2295 188 FSGEYVYVTKCFACGNET--DRSEIFYELVVNV---CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLP 262 (276)
Q Consensus 188 F~g~~~~~~~C~~C~~~s--~~~e~f~~l~l~i---~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP 262 (276)
|+|++.+.++|..|++.+ .+.|+|+.|+|+| ..+|+++|+.++.+ .++ |.|++|++.+.++|+.+|.++|
T Consensus 157 F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~l~----~~c~~c~~~~~~~k~~~i~~lP 231 (404)
T 2ayn_A 157 FGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQE-EIT----KQSPTLQRNALYIKSSKISRLP 231 (404)
T ss_dssp TCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEE-CCC----CEETTTTEECCEEEEEEEEECC
T ss_pred ccEEEEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhccc-cee----ecchhhCCccceeeeeeHhhCC
Confidence 999999999999999995 7999999999999 35899999999974 444 7999999999999999999999
Q ss_pred ceEEEEEeceeecC
Q psy2295 263 KVLNLQLMRFVFDR 276 (276)
Q Consensus 263 ~vL~i~L~Rf~~dr 276 (276)
+||+|||+||.||+
T Consensus 232 ~vL~i~LkRF~~~~ 245 (404)
T 2ayn_A 232 AYLTIQMVRFFYKE 245 (404)
T ss_dssp SSEEEEEECBCCCC
T ss_pred CceEEEEEEEEEec
Confidence 99999999999973
No 7
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-43 Score=328.02 Aligned_cols=202 Identities=34% Similarity=0.555 Sum_probs=177.4
Q ss_pred cCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q psy2295 55 LRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK 134 (276)
Q Consensus 55 ~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~ 134 (276)
.+..++++||.|+||||||||+||+|+++|+||++++........ ...++..+|+.||..|+.+.
T Consensus 169 ~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~--------------~~~~~~~~l~~lf~~l~~~~- 233 (522)
T 2f1z_A 169 SKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDD--------------SSKSVPLALQRVFYELQHSD- 233 (522)
T ss_dssp TTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSC--------------TTTCHHHHHHHHHHHHHHCS-
T ss_pred ccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCc--------------ccchHHHHHHHHHHHHhcCC-
Confidence 345688999999999999999999999999999999875322110 12468899999999999876
Q ss_pred cccCcHHHHHHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecc
Q psy2295 135 LLVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIF 211 (276)
Q Consensus 135 ~~i~p~~~~~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f 211 (276)
.+++|..|+..++ |.++.|||||||+.+||+ .|+++++.. ...++|.++|+|++.+.++|..|++.+.+.|+|
T Consensus 234 ~~~~~~~l~~~~~~~~~~~~~QqDa~Efl~~LLd-~L~~~l~~~---~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f 309 (522)
T 2f1z_A 234 KPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLD-NVENKMKGT---CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDY 309 (522)
T ss_dssp SCBCCTTHHHHTCCCTTTSSTTSCHHHHHHHHHH-HHHHHHTTS---TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEE
T ss_pred CccCcHHHHhhcCCccCCCcccccHHHHHHHHHH-HHHhhccCC---ccccchhhheeEEEEEEEEcCCCCceeeeeeee
Confidence 6789999999886 778999999999999999 999988643 234689999999999999999999999999999
Q ss_pred eeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295 212 YELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276 (276)
Q Consensus 212 ~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr 276 (276)
+.|+|+| ..+|+++|+.|+.+|.++|+|+|.|+.|+ .+.|+|+..|.++|+||+|||+||.||.
T Consensus 310 ~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~ 375 (522)
T 2f1z_A 310 YDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDP 375 (522)
T ss_dssp SCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECS
T ss_pred EEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcc
Confidence 9999999 67999999999999999999999999996 5789999999999999999999999973
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=9.7e-43 Score=316.43 Aligned_cols=205 Identities=23% Similarity=0.301 Sum_probs=165.0
Q ss_pred cccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC
Q psy2295 53 QELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS 132 (276)
Q Consensus 53 ~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~ 132 (276)
...+...+++||.|+||||||||+||+|+++|+||++++.+........... .......++..+|+.||..|+.+
T Consensus 16 ~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~lf~~l~~~ 90 (415)
T 1vjv_A 16 QVQQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGA-----QDEEIHKQIVIEMKRCFENLQNK 90 (415)
T ss_dssp ---CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTS-----TTHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCccc-----ccccchhHHHHHHHHHHHHHhcC
Confidence 3455678899999999999999999999999999999998754322110000 00001357999999999999998
Q ss_pred CCcccCcHHHHHHhC-----CC-------CCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCC
Q psy2295 133 NKLLVDPTDFVLTLG-----LD-------RSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFA 200 (276)
Q Consensus 133 ~~~~i~p~~~~~~l~-----~~-------~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~ 200 (276)
....++|..|+..++ |. ++.||||+||+.+||+ .|++++.. ++|.++|+ ++.+.++|..
T Consensus 91 ~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd-~L~~~~~~-------~~i~~~F~-~~~~~~~C~~ 161 (415)
T 1vjv_A 91 SFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFH-SMSIVFGD-------KFSEDFRI-QFKTTIKDTA 161 (415)
T ss_dssp -CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHH-HHHHHHTH-------HHHTTTCE-EEEEEEEETT
T ss_pred CCCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHH-HHHHHhcc-------chHHHHHH-hheEEEEECC
Confidence 888999999999885 55 7999999999999999 99999843 68999999 9999999999
Q ss_pred CCCee--eeeecceeeeecc---cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 201 CGNET--DRSEIFYELVVNV---CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 201 C~~~s--~~~e~f~~l~l~i---~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
|++++ .+.|+|+.|+|+| ..+|+++|+.++.++ ++ |.|++|++.+.++|+.+|.++|+||+|||+||.||
T Consensus 162 C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~ 236 (415)
T 1vjv_A 162 NDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK-IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWK 236 (415)
T ss_dssp EEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEEEEEEEEECBSEEEEEECCEEEE
T ss_pred CCCCccccccccceeeeeccccccchHHHHHHHHhhhh-hh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEe
Confidence 99986 5899999999999 358999999999854 44 79999999999999999999999999999999997
Q ss_pred C
Q psy2295 276 R 276 (276)
Q Consensus 276 r 276 (276)
+
T Consensus 237 ~ 237 (415)
T 1vjv_A 237 R 237 (415)
T ss_dssp T
T ss_pred C
Confidence 3
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=3.8e-42 Score=317.73 Aligned_cols=208 Identities=25% Similarity=0.387 Sum_probs=173.0
Q ss_pred CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC--
Q psy2295 57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK-- 134 (276)
Q Consensus 57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~-- 134 (276)
..+|++||.|+||||||||+||+|+++|+||++++.......... .....++.++|+.+|..|+....
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~----------~~~~~~l~~~l~~l~~~l~~~~~~~ 206 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKV----------RSPDKCFSCALDKIVHELYGALNTK 206 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSS----------CCTTTCHHHHHHHHHHHHHSCCCC-
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccC----------CCcccchHHHHHHHHHHHhhccccc
Confidence 457899999999999999999999999999999986432211100 00125689999999999987432
Q ss_pred -------cccCcHHHHHHhC--------CCCCccccHHHHHHHHHHHHHHHHhhccCC----------cchhhhhhhccc
Q psy2295 135 -------LLVDPTDFVLTLG--------LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL----------PHIKNFIKDYFS 189 (276)
Q Consensus 135 -------~~i~p~~~~~~l~--------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~----------~~~~~~i~~~F~ 189 (276)
..+.|..+...++ |.+++|||||||+.+||+ .|++++..... ....++|.++|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd-~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~ 285 (476)
T 3mhs_A 207 QASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIIN-QIHQSYVLDLPNAKEVSRANNKQCECIVHTVFE 285 (476)
T ss_dssp -------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHH-HHHHHHHHHCCC-------CCCSCCSHHHHHSC
T ss_pred ccccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHH-HHHHHHhhcccccccccccccccCCCcceeecc
Confidence 2566776665442 889999999999999999 99988754221 123568999999
Q ss_pred eEEEEEEEeCCCCCee-eeeecceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEE
Q psy2295 190 GEYVYVTKCFACGNET-DRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLN 266 (276)
Q Consensus 190 g~~~~~~~C~~C~~~s-~~~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~ 266 (276)
|++.+.++|..|+.++ .+.++|+.|+|+| ..+|+++|+.|+++|.+++.+ |.|++|+.++.++|+.+|.++|+||+
T Consensus 286 G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~ 364 (476)
T 3mhs_A 286 GSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLV 364 (476)
T ss_dssp EEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEE
T ss_pred eEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceE
Confidence 9999999999999997 4599999999999 789999999999999999655 99999999999999999999999999
Q ss_pred EEEeceeecC
Q psy2295 267 LQLMRFVFDR 276 (276)
Q Consensus 267 i~L~Rf~~dr 276 (276)
|||+||.|++
T Consensus 365 i~LkRF~~~~ 374 (476)
T 3mhs_A 365 LQLKRFEHLL 374 (476)
T ss_dssp EEECCEEECT
T ss_pred EEeeeccccC
Confidence 9999999863
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=331.47 Aligned_cols=201 Identities=21% Similarity=0.279 Sum_probs=173.5
Q ss_pred CCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC---
Q psy2295 56 RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS--- 132 (276)
Q Consensus 56 ~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~--- 132 (276)
....+++||.|+||||||||+||+|+++|+||++++........... ......+..+|++||..|+.+
T Consensus 339 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~---------~~~~~~l~~~l~~L~~~L~s~~~s 409 (854)
T 3ihp_A 339 LFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAP---------TDPTQDFSTQVAKLGHGLLSGEYS 409 (854)
T ss_dssp CCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCC---------SCGGGCHHHHHHHHHHHHHSCC--
T ss_pred ccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhcccc---------CCccccHHHHHHHHHHHHhccccc
Confidence 34678999999999999999999999999999999853211000000 001357999999999999863
Q ss_pred -----------------CCcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccce
Q psy2295 133 -----------------NKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSG 190 (276)
Q Consensus 133 -----------------~~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g 190 (276)
....++|..|+..++ |.+++||||+|||.+||+ .|+++++. .+.|.++|+|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd-~L~~el~~------~s~i~~lF~G 482 (854)
T 3ihp_A 410 KPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLIN-MVERNCRS------SENPNEVFRF 482 (854)
T ss_dssp -------------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHH-HHHHTCTT------SCCGGGGTCE
T ss_pred cccccccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHH-HHHHHhcc------cCCchhhcCc
Confidence 345899999999986 788999999999999999 99999853 3578999999
Q ss_pred EEEEEEEeCCCCCeeeeeecceeeeeccc----------------------------------ccHHHHHHHhhccceec
Q psy2295 191 EYVYVTKCFACGNETDRSEIFYELVVNVC----------------------------------KTLDESMREFLKEELLE 236 (276)
Q Consensus 191 ~~~~~~~C~~C~~~s~~~e~f~~l~l~i~----------------------------------~sl~~~L~~~~~~e~l~ 236 (276)
++.+.++|..|++++.+.++|+.|+|+|. .+|+++|+.|+.+|.++
T Consensus 483 ~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le 562 (854)
T 3ihp_A 483 LVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVD 562 (854)
T ss_dssp EEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEE
T ss_pred eEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEee
Confidence 99999999999999999999999999992 39999999999999999
Q ss_pred CCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295 237 GDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275 (276)
Q Consensus 237 g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d 275 (276)
| |+|++|+.++.|.|+.+|.++|+||+|||+||.||
T Consensus 563 ~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d 598 (854)
T 3ihp_A 563 D---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFG 598 (854)
T ss_dssp E---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEEC
T ss_pred e---eeccccCCcceeeEEEEeeeCCceEEEEeehheec
Confidence 5 99999999999999999999999999999999996
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.83 E-value=3.7e-21 Score=167.16 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHH-HHHHHHHhcCCCccc
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL-QMLFALMQHSNKLLV 137 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~lf~~l~~~~~~~i 137 (276)
+.|+||.|+||||||||.||+|+++|++++.++.+....... .....+..+| +.||..|.. ..+
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~------------~~~~~l~~~L~r~i~~~Lrk---~~~ 71 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDV------------EYYSETQELLRTEIVNPLRI---YGY 71 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSC------------TTHHHHHHHHHHTTHHHHHH---TSE
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcc------------hhHHHHHHHHHHHHHHHHhh---cCC
Confidence 469999999999999999999999999999999885442210 0123688899 899999987 679
Q ss_pred CcHHHHHHhC-----C---C--CCccccHHHHHHHHHHHHHHHH
Q psy2295 138 DPTDFVLTLG-----L---D--RSYQQDAQEFSKLFLSNFVEEK 171 (276)
Q Consensus 138 ~p~~~~~~l~-----~---~--~~~QqDa~Efl~~ll~~~l~~~ 171 (276)
.|..|+..|+ | . ++.||||.||+..||. .|...
T Consensus 72 ~P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~-~L~~~ 114 (374)
T 2vhf_A 72 VCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFH-HILRV 114 (374)
T ss_dssp ECHHHHHHHHHHHHHHC--------CCCHHHHHHHHHT-TTTCC
T ss_pred CcHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHH-HHhhc
Confidence 9999999886 2 2 5899999999999999 66543
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=92.64 E-value=0.32 Score=38.87 Aligned_cols=85 Identities=28% Similarity=0.311 Sum_probs=53.2
Q ss_pred CCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCccc
Q psy2295 58 PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV 137 (276)
Q Consensus 58 ~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i 137 (276)
-.|.+=|+=.-|+||+||++=.|-+.... ++.++..+ ..-
T Consensus 10 ~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~-----------------------------------~~~aw~~f-----~~G 49 (211)
T 3mp2_A 10 LNGKIILKQGDNNCWINACCYQLQAFDFF-----------------------------------NNEAWEKF-----KKG 49 (211)
T ss_dssp ETTEEEECCCTTCHHHHHHHHHHTTCTTC-----------------------------------CCHHHHHH-----TTT
T ss_pred ECCEEEEEccCCCcHHHHHHHHHHhcChh-----------------------------------HHHHHHHH-----hCC
Confidence 34555566678999999998666444332 12222222 223
Q ss_pred CcHHHHHHh----CCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295 138 DPTDFVLTL----GLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGN 203 (276)
Q Consensus 138 ~p~~~~~~l----~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 203 (276)
+|..|...+ +...|+-.||+++|..|+. ++=.......++|. ||.
T Consensus 50 d~~~fV~~~Ya~~~~~~G~~gDa~~~L~~Ll~--------------------~~~~a~~v~~~~C~-Cg~ 98 (211)
T 3mp2_A 50 DVMDFVNLCYAATTLARGHSGDAEYLLELMLN--------------------DYSTAKIVLAAKCG-CGE 98 (211)
T ss_dssp CCHHHHHHHHHHHTCCTTSCCCHHHHHHHHHT--------------------TCCCEEEEEEEEET-TEE
T ss_pred ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH--------------------hhccceEEEEEEEc-CCC
Confidence 455555433 5777888999999999987 22233455677886 876
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=90.65 E-value=0.67 Score=39.44 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=44.9
Q ss_pred CCcccccccCCcchhhHHHHHHhcCHH-HHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCccc
Q psy2295 59 NEFIGLKNLGATCYVNSLLQLWFHNLP-FRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV 137 (276)
Q Consensus 59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i 137 (276)
.+.+=|+=.-|+||+||++=.|-+... |+ . .+|+.++..+. .-
T Consensus 100 ~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~----------------------------~---~~l~~aw~~f~-----~G 143 (315)
T 2fe8_A 100 GGLTSIKWADNNCYLSSVLLALQQLEVKFN----------------------------A---PALQEAYYRAR-----AG 143 (315)
T ss_dssp TTEECCCCCTTTHHHHHHHHHHHTSCCCBS----------------------------S---HHHHHHHHHHH-----HT
T ss_pred CCEEEEeecCCccHHHHHHHHHHhcCCccC----------------------------C---HHHHHHHHHHh-----CC
Confidence 455556667899999999755533321 10 1 13444444442 24
Q ss_pred CcHHHHHHh----CCCCCccccHHHHHHHHHH
Q psy2295 138 DPTDFVLTL----GLDRSYQQDAQEFSKLFLS 165 (276)
Q Consensus 138 ~p~~~~~~l----~~~~~~QqDa~Efl~~ll~ 165 (276)
+|..|...+ +...|+-.||+++|..|++
T Consensus 144 d~~~FVa~~Ya~~~~~~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 144 DAANFCALILAYSNKTVGELGDVRETMTHLLQ 175 (315)
T ss_dssp CCHHHHHHHHHHTTCCTTSCCCHHHHHHHHHT
T ss_pred ChHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Confidence 566665543 4778888999999999988
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=88.75 E-value=0.13 Score=38.14 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=27.1
Q ss_pred CCCcccccccCCcchhhHHHHHHhcC-HHHHHHHhcc
Q psy2295 58 PNEFIGLKNLGATCYVNSLLQLWFHN-LPFRKAVLDW 93 (276)
Q Consensus 58 ~~~~~GL~NlgntCY~NS~LQ~L~~~-p~f~~~l~~~ 93 (276)
++.+.|+.|..++|++|++||+.... .+|-+..+..
T Consensus 10 kk~fys~pN~hdncWLNtilQLfryvdepfFd~~y~s 46 (167)
T 1qmy_A 10 KKTFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYSS 46 (167)
T ss_dssp EEECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHTC
T ss_pred ccccccCCCCCcchHHHHHHHHHHHcCccchhhccCC
Confidence 35688999999999999999987543 3455555543
No 15
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=49.50 E-value=24 Score=25.94 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=27.0
Q ss_pred EEEEEEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCce
Q psy2295 191 EYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQ 250 (276)
Q Consensus 191 ~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~ 250 (276)
...-..+|..||+.....+....|.-.... ...+-||.+.. .+.|+.||...
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~------~~h~~p~~~~~--~~~CP~Cgs~~ 117 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKE------DIHFIPEVVHA--FLACPKCGSHD 117 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGG------GCCCCGGGCGG--GCSCSSSSCCC
T ss_pred ecCCcEECCCCCCEEecccccccccccccc------ccccccccccc--CCcCccccCCc
Confidence 445578899999986544322211111100 00123333332 36899999865
No 16
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.49 E-value=23 Score=24.06 Aligned_cols=32 Identities=3% Similarity=0.226 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 116 QTAIGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 116 ~~l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
..-..+|+..|..+...+.+.|+..+|...++
T Consensus 32 ~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~ 63 (100)
T 2lv7_A 32 EDELEEIREAFKVFDRDGNGFISKQELGTAMR 63 (100)
T ss_dssp GGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 34567788999999888888899998887764
No 17
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=44.17 E-value=9.9 Score=29.27 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=32.2
Q ss_pred EeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCce
Q psy2295 197 KCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQ 250 (276)
Q Consensus 197 ~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~ 250 (276)
-|..|+.. .....|..- ++...|-..++.|...|... +|.+||...
T Consensus 126 yc~~c~~~-~~e~~f~~~--dl~~ql~~~~~~f~~~~e~r-----tc~~CG~~~ 171 (176)
T 1zvf_A 126 YCSHCRQV-VHESELQML--DLGTQVKEAILDFENDVEKR-----TCFHCKTLN 171 (176)
T ss_dssp ECTTTCCE-EEEEECCSS--STTHHHHHHHHHHHTCHHHH-----BCTTTCCBC
T ss_pred EcCCCCCE-EEEEEEEEe--chhHhHHHHHHHHhcChhhc-----cCCCCCCcC
Confidence 58888763 222333322 44577999999999998865 899999754
No 18
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=43.95 E-value=9.5 Score=23.29 Aligned_cols=40 Identities=25% Similarity=0.583 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCc
Q psy2295 193 VYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKK 249 (276)
Q Consensus 193 ~~~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~ 249 (276)
...+.|+.||+.. -.|+.+..-- --.+.++- |.|.+|+..
T Consensus 13 ~~~~~Cp~Cg~~~---~~~~q~Q~rs----------adep~T~f----y~C~~Cg~~ 52 (57)
T 1qyp_A 13 TTKITCPKCGNDT---AYWWEMQTRA----------GDEPSTIF----YKCTKCGHT 52 (57)
T ss_dssp EEECCCTTTCCSE---EEEEEECCSS----------SSCSSEEE----EEESSSCCE
T ss_pred ceEeECCCCCCCE---EEEEEeeccc----------CCCCCcEE----EEcCCCCCE
Confidence 3467899999833 2334433211 01233344 899999864
No 19
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=38.10 E-value=10 Score=29.23 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=31.4
Q ss_pred EeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCce
Q psy2295 197 KCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQ 250 (276)
Q Consensus 197 ~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~ 250 (276)
-|..|+.. .....|..- ++...|-..++.|...|... +|.+||...
T Consensus 124 yc~~c~~~-~~e~~f~~~--dl~~~l~~~~~~f~~~~~~r-----tc~~Cg~~~ 169 (174)
T 1yfu_A 124 YCDACGHL-VHRVEVQLK--SIVTDLPPLFESFYASEDKR-----RCPHCGQVH 169 (174)
T ss_dssp ECTTTCCE-EEEEEECCS--CHHHHSHHHHHHHHTCHHHH-----BCTTTCCBC
T ss_pred EcCCCCCE-EEEEEEEEe--chhHhHHHHHHHHhcCHhhc-----cCCCCCCcC
Confidence 58888773 222233221 34567889999999998865 899999754
No 20
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=38.01 E-value=55 Score=20.04 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 119 IGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 119 ~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
...+..+|..+.....+.|+..+|...+.
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~ 34 (77)
T 2joj_A 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMR 34 (77)
T ss_dssp HHHHHHHHHHHCCSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 45566777777666666677777666553
No 21
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=35.48 E-value=17 Score=24.08 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=21.8
Q ss_pred ccccCcCCCceeeEEEEEeccCCceEEEEEe-cee-ec
Q psy2295 240 QYFCNRCGKKQNAGRRIRLKYLPKVLNLQLM-RFV-FD 275 (276)
Q Consensus 240 ~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~-Rf~-~d 275 (276)
+..|++||..+-..-..++. ----+.+||+ ||. |+
T Consensus 30 k~FCp~CGn~TL~Rvsvsvd-~~G~~~~hl~~n~~~~n 66 (79)
T 2con_A 30 RVFCGHCGNKTLKKVSVTIN-DDGTLHMHFSRNPKVLN 66 (79)
T ss_dssp CCSCSSSCCSCCEEEECBCC-SSCCCBCCCCCCCCCCC
T ss_pred cccccccCcccceEEEEEEC-CCCcEEEeccCCccccc
Confidence 57899999875333333333 3366678886 566 54
No 22
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=31.14 E-value=85 Score=20.00 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 118 AIGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 118 l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
-...+..+|..+.....+.|+..+|...++
T Consensus 18 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~ 47 (90)
T 1avs_A 18 MIAEFKAAFDMFDADGGGDISTKELGTVMR 47 (90)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 456778888888777777888888877764
No 23
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=28.51 E-value=73 Score=18.63 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCcccCcHHHHHHh
Q psy2295 122 LQMLFALMQHSNKLLVDPTDFVLTL 146 (276)
Q Consensus 122 l~~lf~~l~~~~~~~i~p~~~~~~l 146 (276)
+..+|..+.....+.|+..+|...+
T Consensus 3 l~~~F~~~D~d~~G~i~~~el~~~l 27 (67)
T 1tiz_A 3 AKRVFEKFDKNKDGKLSLDEFREVA 27 (67)
T ss_dssp HHHHHHHHCTTSSSCEEHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 3455555555555556666555554
No 24
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=26.61 E-value=27 Score=17.86 Aligned_cols=13 Identities=23% Similarity=0.777 Sum_probs=9.7
Q ss_pred CCCccccCcCCCc
Q psy2295 237 GDDQYFCNRCGKK 249 (276)
Q Consensus 237 g~n~~~C~~C~~~ 249 (276)
|+..|.|+.|++.
T Consensus 8 ~~k~~~C~~C~k~ 20 (37)
T 1p7a_A 8 GIKPFQCPDCDRS 20 (37)
T ss_dssp CSSSBCCTTTCCC
T ss_pred CCCCccCCCCCcc
Confidence 3446999999864
No 25
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=26.56 E-value=82 Score=19.66 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 117 TAIGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 117 ~l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
.-...+..+|..+.....+.|+..+|...+.
T Consensus 11 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~ 41 (85)
T 2ktg_A 11 EEQQEYKEAFQLFDKDNDNKLTAEELGTVMR 41 (85)
T ss_dssp HHHHHHHHHHHHTCTTCCSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3456788888888877777888888887764
No 26
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.36 E-value=25 Score=18.25 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=9.7
Q ss_pred CCCccccCcCCCc
Q psy2295 237 GDDQYFCNRCGKK 249 (276)
Q Consensus 237 g~n~~~C~~C~~~ 249 (276)
|+..|.|+.|++.
T Consensus 6 ~~k~~~C~~C~k~ 18 (37)
T 2elm_A 6 SGHLYYCSQCHYS 18 (37)
T ss_dssp SSCEEECSSSSCE
T ss_pred CCcCeECCCCCcc
Confidence 3446999999864
No 27
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=25.89 E-value=1.3e+02 Score=19.58 Aligned_cols=29 Identities=3% Similarity=0.117 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 119 IGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 119 ~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
...+..+|..+.....+.|+..+|...+.
T Consensus 28 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~ 56 (94)
T 2kz2_A 28 EEEIREAFRVEDKDGNGYISAAELRHVMT 56 (94)
T ss_dssp HHHHHHHHHHHCTTCCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcCcCCHHHHHHHHH
Confidence 34567778777776667788887777664
No 28
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=25.81 E-value=21 Score=19.29 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=10.6
Q ss_pred cCCCccccCcCCCc
Q psy2295 236 EGDDQYFCNRCGKK 249 (276)
Q Consensus 236 ~g~n~~~C~~C~~~ 249 (276)
.|+..|.|+.|++.
T Consensus 4 ~gekp~~C~~CgK~ 17 (36)
T 1fv5_A 4 LKPARFMCLPCGIA 17 (36)
T ss_dssp SSCCCCEETTTTEE
T ss_pred CCccCeECCCCCCc
Confidence 35567999999864
No 29
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.56 E-value=28 Score=17.45 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=9.7
Q ss_pred CCCccccCcCCCc
Q psy2295 237 GDDQYFCNRCGKK 249 (276)
Q Consensus 237 g~n~~~C~~C~~~ 249 (276)
|+..|.|+.|++.
T Consensus 4 ~~k~~~C~~C~k~ 16 (35)
T 1srk_A 4 GKRPFVCRICLSA 16 (35)
T ss_dssp CCSCEECSSSCCE
T ss_pred CCcCeeCCCCCcc
Confidence 3456999999864
No 30
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.24 E-value=29 Score=17.34 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=9.3
Q ss_pred CCccccCcCCCc
Q psy2295 238 DDQYFCNRCGKK 249 (276)
Q Consensus 238 ~n~~~C~~C~~~ 249 (276)
+..|.|+.|++.
T Consensus 5 ~k~~~C~~C~k~ 16 (35)
T 2elx_A 5 SSGYVCALCLKK 16 (35)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeECCCCcch
Confidence 446999999864
No 31
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=24.22 E-value=64 Score=18.93 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=7.8
Q ss_pred HHHHHhcCCCcccCcHHHHH
Q psy2295 125 LFALMQHSNKLLVDPTDFVL 144 (276)
Q Consensus 125 lf~~l~~~~~~~i~p~~~~~ 144 (276)
+|..+.....+.|+..+|..
T Consensus 5 ~F~~~D~d~~G~i~~~e~~~ 24 (66)
T 3li6_A 5 LFKEIDVNGDGAVSYEEVKA 24 (66)
T ss_dssp HHHHHCTTCSSSCCHHHHHH
T ss_pred HHHHHCCCCCCcccHHHHHH
Confidence 33333333333444444433
No 32
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.77 E-value=30 Score=16.03 Aligned_cols=10 Identities=20% Similarity=0.879 Sum_probs=8.1
Q ss_pred ccccCcCCCc
Q psy2295 240 QYFCNRCGKK 249 (276)
Q Consensus 240 ~~~C~~C~~~ 249 (276)
.|.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 4899999864
No 33
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=23.65 E-value=67 Score=18.99 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=9.6
Q ss_pred CCCccccCcCCCc
Q psy2295 237 GDDQYFCNRCGKK 249 (276)
Q Consensus 237 g~n~~~C~~C~~~ 249 (276)
++..|.|+.|++.
T Consensus 37 ~~~~~~C~~C~k~ 49 (66)
T 2drp_A 37 NVKVYPCPFCFKE 49 (66)
T ss_dssp SCCCEECTTTCCE
T ss_pred CCcCeECCCCCCc
Confidence 3446999999864
No 34
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=23.36 E-value=74 Score=20.56 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 117 TAIGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 117 ~l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
.-...+..+|..+.....+.|+..+|...+.
T Consensus 24 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~ 54 (91)
T 2pmy_A 24 EELARLRSVFAACDANRSGRLEREEFRALCT 54 (91)
T ss_dssp HHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCcHHHHHHHHH
Confidence 4567788899999888778899998887775
No 35
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.35 E-value=1.1e+02 Score=20.05 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 118 AIGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 118 l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
-...+..+|..+.....+.|+..++...+.
T Consensus 8 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~ 37 (95)
T 1c07_A 8 EKAKYDEIFLKTDKDMDGFVSGLEVREIFL 37 (95)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 345677888888777777788888777664
No 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.28 E-value=32 Score=16.02 Aligned_cols=10 Identities=50% Similarity=1.305 Sum_probs=8.1
Q ss_pred ccccCcCCCc
Q psy2295 240 QYFCNRCGKK 249 (276)
Q Consensus 240 ~~~C~~C~~~ 249 (276)
.|.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (28)
T 2kvf_A 3 PYSCSVCGKR 12 (28)
T ss_dssp SEECSSSCCE
T ss_pred CccCCCCCcc
Confidence 4899999864
No 37
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.27 E-value=1.5e+02 Score=20.25 Aligned_cols=29 Identities=7% Similarity=-0.113 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 119 IGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 119 ~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
...+..+|..+.....+.|+..++...++
T Consensus 21 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~ 49 (110)
T 1iq3_A 21 REYYVNQFRSLQPDPSSFISGSVAKNFFT 49 (110)
T ss_dssp HHHHHHHHHHHCCSSSSEEEHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHH
Confidence 56788899999887778899888888774
No 38
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=22.99 E-value=32 Score=19.30 Aligned_cols=13 Identities=38% Similarity=0.894 Sum_probs=9.8
Q ss_pred CCccccCcCCCce
Q psy2295 238 DDQYFCNRCGKKQ 250 (276)
Q Consensus 238 ~n~~~C~~C~~~~ 250 (276)
...|.|++|++..
T Consensus 7 ~~~~~C~~C~~~i 19 (39)
T 2i5o_A 7 EDQVPCEKCGSLV 19 (39)
T ss_dssp CCEEECTTTCCEE
T ss_pred CCCcccccccCcC
Confidence 3458999998764
No 39
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=22.61 E-value=67 Score=28.20 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=32.9
Q ss_pred eEEEEEEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCceeeEE
Q psy2295 190 GEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGR 254 (276)
Q Consensus 190 g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k 254 (276)
........|+.|+....+ ......+| ||++-++.. +.|++||-+..-.+
T Consensus 215 ev~~~~s~Cp~C~~~~~t--~~~~~~IP-----------~F~eViims---~~C~~CGyr~neVk 263 (404)
T 2qkd_A 215 EVLQFNTNCPECNAPAQT--NMKLVQIP-----------HFKEVIIMA---TNCENCGHRTNEVK 263 (404)
T ss_dssp CEEEEEECCTTTCCTTCE--EEEEECCT-----------TSCCEEEEE---EECSSSCCEEEEEE
T ss_pred ceeeecccCccCCCccEE--EEEEEeCC-----------CCCcEEEEE---EECCCCCCccccee
Confidence 345567789999965432 23444555 688877774 99999998764443
No 40
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=22.16 E-value=1.6e+02 Score=18.62 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCCcccCcHHHHHHhC
Q psy2295 118 AIGHLQMLFALMQHSNKLLVDPTDFVLTLG 147 (276)
Q Consensus 118 l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~ 147 (276)
-...+..+|..+.....+.|+..+|...+.
T Consensus 7 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~ 36 (92)
T 2kn2_A 7 AEEELKEAFKVFDKDQNGYISASELRHVMI 36 (92)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCeEcHHHHHHHHH
Confidence 455677777777766667777777766653
No 41
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.04 E-value=39 Score=16.95 Aligned_cols=13 Identities=38% Similarity=0.956 Sum_probs=9.6
Q ss_pred CCCccccCcCCCc
Q psy2295 237 GDDQYFCNRCGKK 249 (276)
Q Consensus 237 g~n~~~C~~C~~~ 249 (276)
++..|.|+.|++.
T Consensus 6 ~~~~~~C~~C~k~ 18 (36)
T 2elr_A 6 SGKTHLCDMCGKK 18 (36)
T ss_dssp CCSSCBCTTTCCB
T ss_pred CCCCeecCcCCCC
Confidence 3446999999864
No 42
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.46 E-value=64 Score=21.45 Aligned_cols=36 Identities=19% Similarity=0.622 Sum_probs=21.4
Q ss_pred EEeCCCCCee-eeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCc
Q psy2295 196 TKCFACGNET-DRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKK 249 (276)
Q Consensus 196 ~~C~~C~~~s-~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~ 249 (276)
..|..|+... ... ..|....... ++..|.|+.|++.
T Consensus 35 ~~C~~C~k~F~~~~---------------~~L~~H~~~h---~~k~~~C~~Cgk~ 71 (96)
T 2ctd_A 35 VSCPTCQAVGRKTI---------------EGLKKHMENC---KQEMFTCHHCGKQ 71 (96)
T ss_dssp EECTTTCSCEESSH---------------HHHHHHHHHH---CCCCCCCSSSCCC
T ss_pred cCCCCCCCCcccCH---------------HHHHHHHHHH---CCCCeECCCCCCe
Confidence 5899998754 332 2233333222 3346999999864
No 43
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.03 E-value=35 Score=15.59 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=7.3
Q ss_pred cccCcCCCc
Q psy2295 241 YFCNRCGKK 249 (276)
Q Consensus 241 ~~C~~C~~~ 249 (276)
|.|+.|++.
T Consensus 2 ~~C~~C~k~ 10 (27)
T 1znf_A 2 YKCGLCERS 10 (27)
T ss_dssp CBCSSSCCB
T ss_pred ccCCCCCCc
Confidence 789999864
No 44
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.87 E-value=38 Score=17.00 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.2
Q ss_pred CCccccCcCCCc
Q psy2295 238 DDQYFCNRCGKK 249 (276)
Q Consensus 238 ~n~~~C~~C~~~ 249 (276)
+..|.|+.|++.
T Consensus 7 ~k~~~C~~C~k~ 18 (36)
T 2elt_A 7 GKPYKCPQCSYA 18 (36)
T ss_dssp CCSEECSSSSCE
T ss_pred CCCCCCCCCCcc
Confidence 446999999864
No 45
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=20.76 E-value=1.8e+02 Score=18.94 Aligned_cols=27 Identities=7% Similarity=0.066 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCCcccCcHHHHHHh
Q psy2295 120 GHLQMLFALMQHSNKLLVDPTDFVLTL 146 (276)
Q Consensus 120 ~~l~~lf~~l~~~~~~~i~p~~~~~~l 146 (276)
..+..+|..+.....+.|+..+|...+
T Consensus 24 ~~l~~~F~~~D~d~~G~i~~~el~~~l 50 (105)
T 1wlz_A 24 HAITQEFENFDTMKTNTISREEFRAIC 50 (105)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 345566666665555666666666554
No 46
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=20.76 E-value=49 Score=17.55 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=10.0
Q ss_pred ccHHHHHHHHHH
Q psy2295 154 QDAQEFSKLFLS 165 (276)
Q Consensus 154 qDa~Efl~~ll~ 165 (276)
+-|+||+.+|++
T Consensus 9 ~aakdFv~WL~n 20 (31)
T 3c5t_B 9 EAVRLFIEWLKN 20 (31)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 348999999997
Done!