RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2295
(276 letters)
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 266 bits (683), Expect = 6e-89
Identities = 123/216 (56%), Positives = 145/216 (67%), Gaps = 6/216 (2%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
GLKNLGATCYVNS LQLWF NL FRKAV + N ED+E KN P +EPQT I L
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPP---DKPHEPQTIIDQL 57
Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKN 182
Q++FA +Q N+ +VDP+ FV LGLD QQDAQEFSKLFLS +E K P +KN
Sbjct: 58 QLIFAQLQFGNRSVVDPSGFVKALGLDTGQQQDAQEFSKLFLS-LLEAKLSKSKNPDLKN 116
Query: 183 FIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQ 240
++D F GEY YVT+C CG E+ FYEL + + KTL+E + EFLKEE L GD+Q
Sbjct: 117 IVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQ 176
Query: 241 YFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
YFC C K +A RRIRL LP LN QL+RFVFDR
Sbjct: 177 YFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDR 212
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 173 bits (440), Expect = 3e-52
Identities = 81/222 (36%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
++GLKN GATCY+NSLLQ + FR AV P ED ++ + L
Sbjct: 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPL------------- 48
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQ 175
LQ LF +Q S + T L+ Q D QEF ++ +EEK +
Sbjct: 49 ALQRLFLFLQLSESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDK-LEEKLKGT 107
Query: 176 SLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEE 233
+ IK+ F G+ V C C +E++R E F +L V V K L+ES+ +++ E
Sbjct: 108 GQEGL---IKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGE 164
Query: 234 LLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
LEGD++YFC +CGKK +A + + K LP VL LQL RF FD
Sbjct: 165 TLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFD 206
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 118 bits (297), Expect = 2e-31
Identities = 70/229 (30%), Positives = 96/229 (41%), Gaps = 27/229 (11%)
Query: 59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTA 118
GL NLG TCY+NS+LQ F P R +L + + + L
Sbjct: 1 EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQL----------- 49
Query: 119 IGHLQMLFALMQHSNKLL--VDPTDFVLTLGLD----RSY-QQDAQEFSKLFLSNFVEEK 171
L LF +Q N V P +F+ LG Y QQDA EF LFL + + E
Sbjct: 50 PRALADLFHALQSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFL-LFLLDQLHED 108
Query: 172 FRVQSLPHIKNF-----IKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV---CKTLD 223
I F G+ KC C E+ E F +L + + L
Sbjct: 109 LNSLKKRKSHAAENESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVLK 168
Query: 224 ESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
FLK E LE +++Y+C +CG KQNA +++ + LP VL + L RF
Sbjct: 169 LLTGNFLKLEELEKEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKRF 217
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 108 bits (271), Expect = 2e-26
Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 25/220 (11%)
Query: 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
++GL+N GATCY+NSLLQ F FRK V P + +++ +L
Sbjct: 193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGI-PTDHPRGRDSVALA------------ 239
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL 177
LQ LF +Q + VD T+ + G D Q D QEF+++ N +E+ R
Sbjct: 240 -LQRLFYNLQTGEE-PVDTTELTRSFGWDSDDSFMQHDIQEFNRVLQDN-LEKSMRGTV- 295
Query: 178 PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELL 235
++N + F G+ KC E+ R E F+++ +NV K L ES R +++ E L
Sbjct: 296 --VENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETL 353
Query: 236 EGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
+GD++Y + G Q+A + + + LP VL+LQL RF +D
Sbjct: 354 DGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYD 392
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 102 bits (257), Expect = 1e-25
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 32/218 (14%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
GL NLG TCY+NS+LQ F FR+ VL N ++ S+ L
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNL---PRLGDSQSVMKK-----------L 46
Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRS----YQQDAQEFSKLFLSNFVEEKFRVQSLP 178
Q+L A + H+ + P D+ L QQD E+ + L R+ +L
Sbjct: 47 QLLQAHLMHTQRRAEAPPDYFLEASRPPWFTPGSQQDCSEYLRYLLD-------RLHTL- 98
Query: 179 HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGD 238
I+ F G+ +C C + + R+E F +L ++ ++ + + FL E L GD
Sbjct: 99 -----IEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-SVQDLLNYFLSPEKLTGD 152
Query: 239 DQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
+QY+C +C Q+A + +++ P+ L L L+RF +D+
Sbjct: 153 NQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQ 190
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 100 bits (252), Expect = 5e-25
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 57/236 (24%)
Query: 63 GLKNLGATCYVNSLLQ-LWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
GL+N G TCY NS+LQ L+F NL +
Sbjct: 1 GLENFGNTCYCNSVLQALYFENL------------------------LTC---------- 26
Query: 122 LQMLFALMQHSNKL--LVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVE----E 170
L+ LF + K ++ P F+ L D QDA EF L+ E E
Sbjct: 27 LKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAE 86
Query: 171 KFRVQSL---------PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCK- 220
+ ++ ++ + F G T+C C + R E F +L ++V +
Sbjct: 87 RKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQN 146
Query: 221 -TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
++ +R+F E L G ++++C+ C Q A +R+++K LPK+L L L RF +D
Sbjct: 147 TSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYD 202
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 93.7 bits (233), Expect = 9e-23
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 13/135 (9%)
Query: 153 QQDAQEFSKLFLSNFVEEKFRVQSLPHI-----KNFIKDYFSGEYVYVTKCFACGNETDR 207
QQDA EF LFL + + E+ + S K+ I D F G+ C CG+E+
Sbjct: 22 QQDAHEFL-LFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVS 80
Query: 208 SEIFYELVVNV------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYL 261
+E L + + +L++ + +F KEE+LEGD+ Y C + KKQ A +R+++K L
Sbjct: 81 TEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKK-KKQEATKRLKIKKL 139
Query: 262 PKVLNLQLMRFVFDR 276
P VL + L RF F+
Sbjct: 140 PPVLIIHLKRFSFNE 154
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 90.0 bits (224), Expect = 1e-21
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 21/132 (15%)
Query: 153 QQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFY 212
QQDAQEF LFL L + + I D F G+ C CG + E F
Sbjct: 22 QQDAQEFL-LFL------------LDGLHSIIVDLFQGQLKSRLTCLTCGKTSTTFEPFT 68
Query: 213 ELVVNVCK--------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKV 264
L + + TL++ +R F KEE L+GD+ + C +C KK+ A +++ + LPKV
Sbjct: 69 YLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKV 128
Query: 265 LNLQLMRFVFDR 276
L + L RF F R
Sbjct: 129 LIIHLKRFSFSR 140
Score = 34.6 bits (80), Expect = 0.033
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 63 GLKNLGATCYVNSLLQLWFHN 83
GL+NLG TCY+NS+LQ +
Sbjct: 1 GLRNLGNTCYMNSILQCLSAD 21
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 82.8 bits (204), Expect = 5e-18
Identities = 65/279 (23%), Positives = 100/279 (35%), Gaps = 61/279 (21%)
Query: 38 FNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFH----NLPFRKAVLDW 93
N +K S D GL+N G TCY+N LQ N +
Sbjct: 55 ANPKKMVVSKRKDNLPP-------NGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQ 107
Query: 94 NPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTL-GLDRSY 152
N D S F F L+ + P +F+ L G ++ +
Sbjct: 108 NINTDFPRGKPGSNAFKQF----------IALYETPGCHGPKSISPRNFIDILSGRNKLF 157
Query: 153 ----QQDAQEFSKLFLSNF----------------------VEEKFRVQSLPHI------ 180
QQD+QEF FL V E+ + H
Sbjct: 158 SGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHL 217
Query: 181 ---KNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKT----LDESMREFLKEE 233
K+ + F G+ +C AC + +F L+V + L E + F +EE
Sbjct: 218 RSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEE 277
Query: 234 LLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
LEG D + C +CG+K+++ +R+ + LP VL + + RF
Sbjct: 278 KLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRF 316
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 81.2 bits (201), Expect = 8e-18
Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 28/229 (12%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
GL+NLG TC++NS+LQ H P +L RE S++ N GF + H+
Sbjct: 3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLS---REHSKDCCNE--GFCMMCALEA---HV 54
Query: 123 QMLFALMQHSNKLLVDPTDFVLTL-----GLDRSYQQDAQEFSKLF--------LSNFVE 169
+ A + P F L Q+DA EF + L F +
Sbjct: 55 ERALASSGPGSA----PRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKK 110
Query: 170 EKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCK--TLDESMR 227
K S ++ F G KC C + ++ + F +L +++ +L++++
Sbjct: 111 LKAVDPSSQE-TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALE 169
Query: 228 EFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
+F K E L+G+++Y C RC KK A +++ + P VL + L RF R
Sbjct: 170 QFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFR 218
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 78.8 bits (194), Expect = 6e-17
Identities = 65/243 (26%), Positives = 98/243 (40%), Gaps = 61/243 (25%)
Query: 59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTA 118
F+GL NLG TCY+NS+LQ VL + P K+ SL S
Sbjct: 22 LPFVGLNNLGNTCYLNSVLQ-----------VLYFCPGFKHGLKHLVSLISS-------- 62
Query: 119 IGHLQMLFALM--QHSNKLLVDPTDFVLTL--GLDRSY----QQDAQEFSKLFLSNFVEE 170
+ LQ F L +++++L +L ++ Y Q DAQE + L N
Sbjct: 63 VEQLQSSFLLNPEKYNDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGN---- 118
Query: 171 KFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV------------ 218
I+ ++ F G+ V T+C C T+R E F ++ V V
Sbjct: 119 ---------IQELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESS 169
Query: 219 ---------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQL 269
KTL ++ +F E + G+D+YFC C A R + LP+V+ + L
Sbjct: 170 EISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHL 229
Query: 270 MRF 272
F
Sbjct: 230 KCF 232
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 72.8 bits (179), Expect = 8e-15
Identities = 65/240 (27%), Positives = 85/240 (35%), Gaps = 44/240 (18%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVL--DWNPREDSEEKNNPSLG------FSGFYE 114
GL NLGATC++N +LQ HN R L + S N+ L F FY
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNS-CLSCAMDEIFQEFYY 60
Query: 115 PQTAIGH-LQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFR 173
+ L L ++ L QQDA EF + L
Sbjct: 61 SGDRSPYGPINLLYLSWKHSRNLAG------------YSQQDAHEFFQFLLDQLHTHYGG 108
Query: 174 V----QSLPHIKNFIKDYFSGEYVYVTKCFACG-----------------NETDRSEIFY 212
H I FSG C CG N++ S
Sbjct: 109 DKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALG 168
Query: 213 ELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
E V+ TL + + F + E L GD Y C+ CG Q A +++ +K LP VL QL RF
Sbjct: 169 ESGVSGTPTLSDCLDRFTRPEKL-GDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRF 227
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 65.1 bits (158), Expect = 6e-12
Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 47/248 (18%)
Query: 46 SDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNP 105
+ P+ ++GL NLG +CY++S++Q AV
Sbjct: 288 KKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGY-----AVSKE------------ 330
Query: 106 SLGFSGFYEPQTAIGHLQMLFA-LMQHSNKLL----------VDPTDFVLTLGLD----- 149
+E L+ LF LM+ +K+ + P DF + +G D
Sbjct: 331 EFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFG 390
Query: 150 RSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSE 209
+ QQDA EF LFL + + R +P I + ++ + C C
Sbjct: 391 KFAQQDAHEFL-LFLLEKIRKGERSYLIPPITSLF-EFEVERRL---SCSGCM----DVS 441
Query: 210 IFYELVVNVCKTLDE-----SMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKV 264
YE ++ +C L+ +R+ ++ L ++ C C K+ A R+ +K LPK
Sbjct: 442 YSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIEWSCENCKGKKKASRKPFIKSLPKY 501
Query: 265 LNLQLMRF 272
L LQ+ R+
Sbjct: 502 LILQVGRY 509
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 63.6 bits (155), Expect = 9e-12
Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 62/216 (28%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
GL NLG TC+ N+++Q P + +L P+E + + F G+
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQ-TPALRELLSETPKELFSQVCRKAPQFKGYQ--------- 50
Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKN 182
QQD+ E + L ++
Sbjct: 51 ------------------------------QQDSHELLRYLLDG-------------LRT 67
Query: 183 FIKDYFSGEYVYVTKCFACGNETDRSEIFYEL------VVNVCKTLDESMREFLKEELLE 236
FI F GE C +CG + E F +L + +++ +++F + E+LE
Sbjct: 68 FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILE 127
Query: 237 GDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
G++++ C C A ++ + LP VL + L RF
Sbjct: 128 GNNKFACENC---TKAKKQYLISKLPPVLVIHLKRF 160
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 63.7 bits (155), Expect = 1e-11
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 62 IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPS---LG-----FSGFY 113
GL N+G TCY+NSLLQ +F P R VL+++ + + P+ +G S
Sbjct: 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQ 61
Query: 114 EPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNF-VEEKF 172
+ L+ LF + HSN V P+ + L L QQD E L V +
Sbjct: 62 RSNQFVYELRSLFNDLIHSNTRSVTPSKELAYLALR---QQDVTECIDNVLFQLEVALEP 118
Query: 173 R--------VQSLPHIKNFIKDYFSGEY----VYVTKCFACGNETDRSEIFYELVVNVCK 220
+ + IK FSG+ V + T ++E F L+V+V K
Sbjct: 119 ISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRT-KTERFLSLLVDVGK 177
Query: 221 TLDESMREFLKEELLEGDDQYF 242
E + ++L + D+YF
Sbjct: 178 KGREIVVLLEPKDLYDALDRYF 199
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 62.0 bits (151), Expect = 4e-11
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 35/226 (15%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
GL NLG TCY+NS LQ R A+ ++NP +++ +L + L
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNA-----------L 49
Query: 123 QMLFALMQHSNKLLVDPTDFVLTL----------GLDRSY-QQDAQE-FSKLF--LSNFV 168
+ LF M + V P +F+ L Y QQDA+E +S+L LS +
Sbjct: 50 RDLFDTMDKKQE-PVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKL 108
Query: 169 EEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRS-EIFYELVVNV-CKTLDESM 226
S FI F E KC +E + S E Y+L ++ T +
Sbjct: 109 PGAGSKGS------FIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYL 162
Query: 227 REFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
++ LK+ LE + + G+ + R+ LPK L +Q +RF
Sbjct: 163 QDGLKKG-LEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRF 207
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 58.2 bits (141), Expect = 6e-10
Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 37/228 (16%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
GL+N G CY+N+LLQL F P A+L + E LGF
Sbjct: 2 GLENNGPNCYLNALLQLMFFIPPLFNAILRHSADCPKENCLLCELGF------------- 48
Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRSY-----QQDAQEFSKLFL-------SNFVEE 170
LF ++ S T+ + T QQD QE ++ L +
Sbjct: 49 --LFDMLDKSTGQNCQATNLLRTFSGIPEAAALGLQQDIQEANRFILEQLSLPLLTLKPD 106
Query: 171 KFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVV-------NVCKTLD 223
F + + + F ++ +C +CGNE+ + E L + +T
Sbjct: 107 IFHNRCTGESGDSLDSLFGTSFISSIRCDSCGNESVKEEPLLTLELPYPPIDKPQGRTFS 166
Query: 224 ESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMR 271
+ L E ++ CN C K A R +K LP +L + L R
Sbjct: 167 NILERSLNREK---INRITCNSCRKYSLANSRKHVKSLPPILGICLKR 211
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 54.6 bits (132), Expect = 1e-08
Identities = 56/255 (21%), Positives = 91/255 (35%), Gaps = 70/255 (27%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLP------------FRKAVLDWNPRED------------ 98
GL+NLG +CY+NS+LQ+ F ++P F V+D P D
Sbjct: 1 GLRNLGNSCYLNSVLQVLF-SIPSFQWRYDDLENKFPSDVVD--PANDLNCQLIKLADGL 57
Query: 99 -SEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQ 157
S + P+ S Q I M AL+ + +F QQDA
Sbjct: 58 LSGRYSKPASLKSENDPYQVGI-KPSMFKALIGKGHP------EF------STMRQQDAL 104
Query: 158 EFSKLFLSNFVEEKFRVQSLPHIKNFIK--DYFSGEYVYVTKCFACGNETDRSEIFYELV 215
EF L L + ++ + N + + + +C +C SE+ L
Sbjct: 105 EFL-LHLIDKLDRESFKN---LGLNPNDLFKFMIEDRL---ECLSCKKVKYTSELSEILS 157
Query: 216 VNVCK----------------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLK 259
+ V K L++ ++ + E +E FC+ C +K A + K
Sbjct: 158 LPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFK 213
Query: 260 YLPKVLNLQLMRFVF 274
P L + + RF
Sbjct: 214 TFPDYLVINMKRFQL 228
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 46.0 bits (109), Expect = 1e-05
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
GL+NLG TCY+NS LQ H R L + E+S + NP LG G +
Sbjct: 267 GLRNLGNTCYMNSALQCLMHTWELRDYFL-SDEYEESINEENP-LGMHG-SVASAYADLI 323
Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRSY-----QQDAQEFSKLFLSNFVEEKFRVQSL 177
+ L+ H+ P+ F T+G QQD+QEF L E+ R+
Sbjct: 324 KQLYDGNLHA----FTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKK 379
Query: 178 PH 179
P+
Sbjct: 380 PY 381
Score = 44.5 bits (105), Expect = 4e-05
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 221 TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
TL + + EF K E L D ++C C + + A +++ L LP +L + L RF R
Sbjct: 676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR 731
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 40.8 bits (96), Expect = 3e-04
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 32/132 (24%)
Query: 153 QQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACG-NETDRSEIF 211
QQDA E ++ L ++ L K F G C CG + R E F
Sbjct: 34 QQDAHELFQVLLE-------TLEQLL------KFPFDGLLASRIVCLQCGESSKVRYESF 80
Query: 212 YELVVNVCK-------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKV 264
L + V TL+ + +FL E+++ Y C+RC + + LP++
Sbjct: 81 TMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQI 129
Query: 265 LNLQLMRFVFDR 276
L + L R VFD
Sbjct: 130 LCIHLSRSVFDG 141
Score = 33.1 bits (76), Expect = 0.11
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 63 GLKNLGATCYVNSLLQ 78
GL NLG TC++NS+LQ
Sbjct: 1 GLVNLGNTCFMNSVLQ 16
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 36.9 bits (86), Expect = 0.008
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPS 106
F+GL N+ Y N ++Q H P R L K+ S
Sbjct: 119 FVGLNNIKNNDYANVIIQALSHVKPIRNFFL--LYENYENIKDRKS 162
>gnl|CDD|233448 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. The NadR protein of E.
coli and closely related bacteria is both enzyme and
regulatory protein. The first 60 or so amino acids,
N-terminal to the region covered by this model, is a
DNA-binding helix-turn-helix domain (pfam01381)
responsible for repressing the nadAB genes of NAD de
novo biosynthesis. The NadR homologs in Mycobacterium
tuberculosis, Haemophilus influenzae, and others appear
to lack the repressor domain. NadR has recently been
shown to act as an enzyme of the salvage pathway of NAD
biosynthesis, nicotinamide-nucleotide
adenylyltransferase; members of this family are presumed
to share this activity. E. coli NadR has also been found
to regulate the import of its substrate, nicotinamide
ribonucleotide, but it is not known if the other members
of this model share that activity.
Length = 325
Score = 33.3 bits (76), Expect = 0.099
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 18/147 (12%)
Query: 96 REDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQD 155
RE EEK Q A+G + + ++H++K+ TDF+ T + Y+
Sbjct: 196 REYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDTDFITTQVFAKQYEGR 255
Query: 156 AQEFSKLFLSNFVEEKFRVQSL-PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYEL 214
F S+ E F + L ++ D + G++ R E L
Sbjct: 256 EHPF---LDSDIAEYPFDLTLLLKPNTEWVDDGL--------RSL--GSQKQRQEFQQLL 302
Query: 215 VVNVCKTLDESMREFLKEELLEGDDQY 241
K LDE F+ E + D+Y
Sbjct: 303 K----KLLDEYGVPFVVIESPDYLDRY 325
>gnl|CDD|225713 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 31.6 bits (72), Expect = 0.26
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 19/139 (13%)
Query: 93 WNP-REDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRS 151
W RE E + A+G A ++++NK+ TDF+ T +
Sbjct: 38 WEYGREYVFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYANKVAFIDTDFLTTQAFCKK 97
Query: 152 YQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFAC-GNETDRSEI 210
Y+ F + E +F + L ++ +V G+ R E
Sbjct: 98 YEGREHPF---LQALIAEYRFDLTLL--LEPNTP--------WVADGLRSLGSSVQRQEF 144
Query: 211 FYELVVNVCKTLDESMREF 229
L + L+E+ F
Sbjct: 145 QNLLE----QMLEENNIPF 159
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 31.3 bits (71), Expect = 0.41
Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 27/146 (18%)
Query: 147 GLDRSYQQDAQEF--------SKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKC 198
D QQDA EF + N + + ++ E YV C
Sbjct: 27 EFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYV--C 84
Query: 199 FACGNETDRSEIFYELVVNVCKTLDESMR--EFLKEELLEGDDQYF------CNRCGKKQ 250
C E E V +V LD SM + +ELL + + + C+ C K +
Sbjct: 85 IGCSFE--------ENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIEKDCSSC-KCE 135
Query: 251 NAGRRIRLKYLPKVLNLQLMRFVFDR 276
+A R+ P+ L++ L R+
Sbjct: 136 SAISSERIMTFPECLSINLKRYKLRI 161
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 268
Score = 29.8 bits (67), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 47 DDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKA 89
+DFD + + + GL+N Y NSLLQL + PFR
Sbjct: 3 EDFDFEFYNK--TNYAGLENHITNSYCNSLLQLLYFIPPFRNF 43
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 29.4 bits (66), Expect = 1.6
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Query: 151 SYQQDAQEFSKLFLSNFVEEKFRVQSLPH-----IKNFIKDYFSGEYVYVTKCFACGNET 205
S QQD EF+ L L +++E+ F+ + KN + F G ++ G
Sbjct: 20 SQQQDVSEFTHLLL-DWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEG--VLEGKPF 76
Query: 206 DRSEIF--YELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPK 263
E F Y L VN L E + + E +E +G+ LP
Sbjct: 77 CNCETFGQYPLQVNGYGNLHECLEAAMFEGEVELL------PSDHSVKSGQERWFTELPP 130
Query: 264 VLNLQLMRFVFDR 276
VL +L RF F++
Sbjct: 131 VLTFELSRFEFNQ 143
Score = 27.9 bits (62), Expect = 5.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 63 GLKNLGATCYVNSLLQLWF 81
GLKN+G TC+ ++++Q F
Sbjct: 1 GLKNVGNTCWFSAVIQSLF 19
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 28.9 bits (65), Expect = 2.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 214 LVVNVCKTLDESMREFLKEELLE 236
L V V KTL++++ E L+EE L
Sbjct: 133 LEVLVGKTLEQALLEVLEEEELA 155
>gnl|CDD|114149 pfam05408, Peptidase_C28, Foot-and-mouth virus L-proteinase.
Corresponds to Merops family C28. Protein fold of the
peptidase unit for members of this family resembles
that of papain. The leader proteinase of foot and mouth
disease virus (FMDV) cleaves itself from the growing
polyprotein and also cleaves the host translation
initiation factor 4GI (eIF4G), thus inhibiting 5'-cap
dependent translation.
Length = 193
Score = 27.9 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 52 DQELRDPNEFIGLKNLGATCYVNSLLQLW 80
D EL E N C++N+LLQL+
Sbjct: 24 DNELDLKMELTSRPNKDNNCWLNALLQLF 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.439
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,190,149
Number of extensions: 1344043
Number of successful extensions: 1193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 47
Length of query: 276
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 180
Effective length of database: 6,679,618
Effective search space: 1202331240
Effective search space used: 1202331240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)