RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2295
(276 letters)
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 102 bits (254), Expect = 9e-26
Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 18/223 (8%)
Query: 62 IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
+G KN+G TCY+N+ LQ + R +L++NP + + +
Sbjct: 7 VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEE-----IHKQIVIE 61
Query: 122 LQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRV---QSLP 178
++ F +Q+ + V P + TL + + EE F
Sbjct: 62 MKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSI 121
Query: 179 HIKNFIKDYFSGEYVYVTKCFACGNE--TDRSEIFYELVVNVCKTLDESMREFLKEELLE 236
+ + F ++ K A N+ +E +L ++ T F++ LLE
Sbjct: 122 VFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGT-----TNFMRNGLLE 176
Query: 237 GDDQYF---CNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
G ++ + G ++ LPK L +Q +RF + R
Sbjct: 177 GLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKR 219
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 92.9 bits (229), Expect = 2e-22
Identities = 54/250 (21%), Positives = 96/250 (38%), Gaps = 41/250 (16%)
Query: 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
GL+NLG TCY+NS+LQ + ++D N E
Sbjct: 15 LTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEE------ 68
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLGLDRSY-----QQDAQEFSKLFLSNFVEEKFRVQ 175
++ + + P DF +T+G QQD+QE + E+ +
Sbjct: 69 -FGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKAD 127
Query: 176 SLPHIK-------------------------NFIKDYFSGEYVYVTKCFACGNETDRSEI 210
+ K + I F G++ +C C ++ E
Sbjct: 128 NRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEA 187
Query: 211 FYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLN 266
F L + + TL + +R F KEE L +++++C+ C ++++ ++I + LP VL
Sbjct: 188 FMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLL 247
Query: 267 LQLMRFVFDR 276
+ L RF +D
Sbjct: 248 VHLKRFSYDG 257
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 87.8 bits (216), Expect = 1e-20
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
++GLKN GATCY+NSLLQ F RKAV D K+ P
Sbjct: 6 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPL-------------- 51
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHI 180
LQ +F +QHS+K V + G + Q + ++ +
Sbjct: 52 ALQRVFYELQHSDK-PVGTKKLTKSFG-WETLDSFMQHDVQELCRVLLDNVENKMKGTCV 109
Query: 181 KNFIKDYFSGEYVYVTKCFACGNETDRSEIF--YELVVNVCKTLDESMREFLKEELLEGD 238
+ I F G+ V +C +DR E + +L + K + ES +++ E L+GD
Sbjct: 110 EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGD 169
Query: 239 DQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
++Y Q A + ++ LP VL+LQLMRF++D
Sbjct: 170 NKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYD 205
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 84.0 bits (206), Expect = 3e-19
Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 46/253 (18%)
Query: 61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
GL+NLG TC++NS+LQ + R L D +N +
Sbjct: 3 LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTAL---------VE 53
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLGLDRSY------QQDAQEFSKLFLSNFVEEKFRV 174
L + S+ V T + QQDAQEF + L E RV
Sbjct: 54 EFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRV 113
Query: 175 -------------------------QSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSE 209
+ L + I D F G+ C CG + +
Sbjct: 114 TLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFD 173
Query: 210 IFYELVVNVCK------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPK 263
F++L + + K TL + MR F KE++L+GD++ C RC ++ ++ ++ PK
Sbjct: 174 PFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPK 233
Query: 264 VLNLQLMRFVFDR 276
+L L L RF R
Sbjct: 234 ILVLHLKRFSESR 246
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 84.0 bits (206), Expect = 3e-19
Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 36/241 (14%)
Query: 62 IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
GL NLG TCY+N+ +Q + A+ + + + + Q
Sbjct: 5 CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASA---------QYITAA 55
Query: 122 LQMLFALMQHSNKLLVDPTDFVLTLGL-----------DRSYQQDAQEFSKLFLSNFVEE 170
L+ LF M ++ + P + L + + QQDA E + ++
Sbjct: 56 LRDLFDSMDKTSS-SIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQK 114
Query: 171 ---------------KFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELV 215
+ K+ I +F E+ KC E +L
Sbjct: 115 LEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQ 174
Query: 216 VNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
++ + + L+ + + + ++ LP L +Q++RF +
Sbjct: 175 LSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYK 234
Query: 276 R 276
Sbjct: 235 E 235
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus
influenzae [TaxId: 727]}
Length = 100
Score = 27.9 bits (62), Expect = 0.43
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 173 RVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKE 232
+ + L +K ++ V+ G S++ +L + + LD R+ LKE
Sbjct: 5 KSEELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDL--DLAIISEEPLDFLARDRLKE 62
Query: 233 ELLE 236
E
Sbjct: 63 AFSE 66
>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (60), Expect = 1.3
Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 5/136 (3%)
Query: 144 LTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGN 203
L + L+ + + F ++F ++ + + + K ++ +
Sbjct: 14 LKMQLNSEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMS 73
Query: 204 ETDRSEI---FYELVVNVCKTLD-ESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLK 259
R EI F + E + +F+ ++ + + I K
Sbjct: 74 LCPRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLID-K 132
Query: 260 YLPKVLNLQLMRFVFD 275
Y P +N Q + +
Sbjct: 133 YEPSGINAQRGQLSPE 148
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 24.3 bits (53), Expect = 7.1
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 6/24 (25%)
Query: 253 GRRIRLKYLPKVLNLQLMRFVFDR 276
RR+R++ LP++ F+ R
Sbjct: 71 ARRVRMRRLPRL------EFLPWR 88
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase
(KNTase), C-terminal domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 128
Score = 24.4 bits (53), Expect = 9.6
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 224 ESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLP 262
+++ + EEL E Y GK +N + +LP
Sbjct: 8 DAICALIVEELFE----YA----GKWRNIRVQGPTTFLP 38
>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 25.3 bits (55), Expect = 9.7
Identities = 6/64 (9%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 137 VDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPH-IKNFIKDYFSGEYVYV 195
+D D+ ++ D+Q + +F ++++ + + + ++
Sbjct: 79 IDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFI 138
Query: 196 TKCF 199
+C
Sbjct: 139 VECH 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.439
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,077,525
Number of extensions: 50661
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 15
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)