Query psy2296
Match_columns 208
No_of_seqs 105 out of 196
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:05:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p6r_A Penicillinase repressor 97.1 0.00093 3.2E-08 46.7 5.8 74 1-80 1-74 (82)
2 2fu4_A Ferric uptake regulatio 96.3 0.0041 1.4E-07 43.3 4.1 68 4-74 10-79 (83)
3 2g9w_A Conserved hypothetical 96.2 0.03 1E-06 42.7 8.9 76 1-81 1-76 (138)
4 1ucr_A Protein DSVD; dissimila 95.8 0.0088 3E-07 42.7 3.9 63 10-79 2-67 (78)
5 2oqg_A Possible transcriptiona 95.6 0.088 3E-06 38.0 9.0 63 12-84 22-84 (114)
6 2xub_A DNA-directed RNA polyme 95.2 0.074 2.5E-06 49.7 9.1 155 12-184 361-528 (534)
7 1sd4_A Penicillinase repressor 94.8 0.13 4.4E-06 37.7 7.9 74 2-81 3-76 (126)
8 2heo_A Z-DNA binding protein 1 94.7 0.017 5.9E-07 39.3 2.6 57 10-77 9-65 (67)
9 1okr_A MECI, methicillin resis 94.6 0.12 4E-06 37.8 7.2 76 1-82 1-77 (123)
10 3jth_A Transcription activator 94.6 0.072 2.5E-06 37.8 5.8 56 12-76 24-79 (98)
11 2k4b_A Transcriptional regulat 94.6 0.043 1.5E-06 40.4 4.6 67 5-77 31-97 (99)
12 1q1h_A TFE, transcription fact 94.5 0.027 9.3E-07 41.0 3.4 65 11-82 18-87 (110)
13 1ku9_A Hypothetical protein MJ 94.4 1.1 3.6E-05 32.9 12.8 65 5-78 22-87 (152)
14 2o03_A Probable zinc uptake re 94.0 0.041 1.4E-06 41.8 3.5 73 1-76 1-74 (131)
15 3pqk_A Biofilm growth-associat 93.7 0.18 6.3E-06 35.9 6.5 61 11-81 23-83 (102)
16 2htj_A P fimbrial regulatory p 93.6 0.085 2.9E-06 36.5 4.3 59 13-79 2-61 (81)
17 2lw1_A ABC transporter ATP-bin 93.3 0.63 2.2E-05 33.3 8.8 65 83-147 18-82 (89)
18 2d1h_A ST1889, 109AA long hypo 93.2 0.38 1.3E-05 33.6 7.4 69 5-82 17-90 (109)
19 3mwm_A ZUR, putative metal upt 93.0 0.12 4.3E-06 39.6 4.9 69 4-75 7-76 (139)
20 2fe3_A Peroxide operon regulat 92.9 0.1 3.5E-06 40.3 4.3 69 5-76 16-85 (145)
21 3cuo_A Uncharacterized HTH-typ 92.8 0.29 1E-05 34.1 6.3 60 12-79 25-84 (99)
22 2kko_A Possible transcriptiona 91.7 0.38 1.3E-05 35.0 5.9 59 13-81 27-85 (108)
23 3viq_B Mating-type switching p 91.3 2 6.7E-05 31.0 9.1 79 122-203 2-84 (85)
24 1mzb_A Ferric uptake regulatio 91.3 0.16 5.3E-06 38.8 3.5 65 5-72 12-78 (136)
25 1sfx_A Conserved hypothetical 91.2 0.85 2.9E-05 31.7 7.2 53 6-68 17-69 (109)
26 2w57_A Ferric uptake regulatio 91.1 0.2 6.9E-06 38.9 4.1 70 5-77 11-82 (150)
27 3f6o_A Probable transcriptiona 90.9 0.49 1.7E-05 34.8 5.9 64 11-84 18-81 (118)
28 2xig_A Ferric uptake regulatio 90.8 0.25 8.6E-06 38.4 4.4 70 5-77 21-91 (150)
29 1xmk_A Double-stranded RNA-spe 90.5 0.089 3.1E-06 37.4 1.3 66 7-82 7-73 (79)
30 1y0u_A Arsenical resistance op 90.2 0.33 1.1E-05 34.3 4.2 47 12-69 32-78 (96)
31 1r1u_A CZRA, repressor protein 89.7 0.85 2.9E-05 32.8 6.2 59 12-80 27-85 (106)
32 1go4_E MAD1 (mitotic arrest de 89.6 1.9 6.4E-05 32.0 8.0 71 78-149 10-96 (100)
33 1ub9_A Hypothetical protein PH 89.3 1.8 6.2E-05 29.8 7.6 61 12-81 17-80 (100)
34 2jsc_A Transcriptional regulat 89.0 0.43 1.5E-05 35.2 4.2 58 11-77 21-78 (118)
35 3g3z_A NMB1585, transcriptiona 88.9 5.4 0.00018 29.2 10.6 69 4-82 26-96 (145)
36 3deu_A Transcriptional regulat 88.4 6.6 0.00023 29.9 10.9 56 4-68 48-103 (166)
37 1oyi_A Double-stranded RNA-bin 88.4 0.62 2.1E-05 33.3 4.5 64 7-81 13-76 (82)
38 4aik_A Transcriptional regulat 88.4 5.9 0.0002 29.9 10.6 118 5-145 27-145 (151)
39 2p4w_A Transcriptional regulat 88.3 5.9 0.0002 32.2 11.0 48 12-68 16-63 (202)
40 1u2w_A CADC repressor, cadmium 88.2 1.1 3.9E-05 33.1 6.1 61 11-79 42-102 (122)
41 3f6v_A Possible transcriptiona 88.1 1.2 4.1E-05 34.6 6.4 65 11-85 58-122 (151)
42 1tbx_A ORF F-93, hypothetical 88.0 2.4 8.4E-05 29.5 7.6 73 4-84 3-75 (99)
43 2qlz_A Transcription factor PF 87.3 6.9 0.00024 32.6 11.1 56 11-75 12-73 (232)
44 3nmd_A CGMP dependent protein 87.1 3.3 0.00011 28.9 7.5 24 126-149 45-68 (72)
45 3tgn_A ADC operon repressor AD 87.1 4.1 0.00014 29.8 8.7 68 4-82 33-102 (146)
46 3v7d_A Suppressor of kinetocho 87.0 0.32 1.1E-05 38.8 2.6 39 164-204 108-151 (169)
47 3eyy_A Putative iron uptake re 86.9 0.54 1.9E-05 36.2 3.8 69 4-76 12-81 (145)
48 3cuq_B Vacuolar protein-sortin 86.5 0.35 1.2E-05 40.4 2.6 62 9-80 152-213 (218)
49 3cuq_A Vacuolar-sorting protei 86.4 1.1 3.8E-05 38.0 5.7 66 4-80 149-215 (234)
50 2ast_A S-phase kinase-associat 86.0 1.1 3.8E-05 35.0 5.2 40 164-205 101-145 (159)
51 1fs1_B SKP1, cyclin A/CDK2-ass 86.0 0.42 1.4E-05 36.8 2.7 47 149-204 88-139 (141)
52 3hnw_A Uncharacterized protein 85.5 7.2 0.00025 30.2 9.6 8 52-59 28-35 (138)
53 3bpv_A Transcriptional regulat 85.5 8.2 0.00028 27.7 10.7 56 4-69 24-79 (138)
54 1qbj_A Protein (double-strande 85.3 1.4 4.8E-05 31.0 4.9 63 7-78 5-70 (81)
55 3bj6_A Transcriptional regulat 85.3 9 0.00031 28.0 10.2 54 5-68 36-89 (152)
56 4ets_A Ferric uptake regulatio 84.4 0.52 1.8E-05 37.2 2.6 69 5-76 27-98 (162)
57 1r1t_A Transcriptional repress 84.3 2.2 7.7E-05 31.6 6.0 58 13-79 48-105 (122)
58 1u5t_A Appears to BE functiona 84.2 0.63 2.2E-05 39.4 3.1 65 5-80 163-228 (233)
59 3r0a_A Putative transcriptiona 83.7 3.9 0.00013 30.2 7.1 54 6-68 23-77 (123)
60 2qc0_A Uncharacterized protein 83.1 0.94 3.2E-05 40.3 3.9 57 14-79 300-356 (373)
61 3onj_A T-snare VTI1; helix, HA 83.1 11 0.00037 27.2 9.3 68 79-149 26-94 (97)
62 2a61_A Transcriptional regulat 82.9 11 0.00038 27.2 11.4 55 5-69 29-83 (145)
63 2dk8_A DNA-directed RNA polyme 82.4 3.5 0.00012 29.3 6.0 65 7-78 10-74 (81)
64 4hbl_A Transcriptional regulat 82.3 10 0.00035 28.0 9.1 54 5-68 37-90 (149)
65 3hnw_A Uncharacterized protein 81.6 14 0.00048 28.5 9.8 20 125-144 114-133 (138)
66 1s3j_A YUSO protein; structura 81.6 7.8 0.00027 28.5 8.2 55 5-69 33-87 (155)
67 2gxg_A 146AA long hypothetical 81.6 13 0.00043 26.9 12.1 54 4-68 32-85 (146)
68 3na7_A HP0958; flagellar bioge 81.5 22 0.00075 29.6 13.9 29 119-147 88-116 (256)
69 3f3x_A Transcriptional regulat 81.3 7.7 0.00026 28.3 8.0 64 6-80 34-99 (144)
70 2v4h_A NF-kappa-B essential mo 81.2 3.7 0.00013 30.9 6.0 65 83-147 41-109 (110)
71 4abx_A DNA repair protein RECN 80.7 19 0.00064 28.3 10.8 64 121-184 87-153 (175)
72 2xvc_A ESCRT-III, SSO0910; cel 80.6 0.94 3.2E-05 30.5 2.2 46 14-66 13-58 (59)
73 3fm5_A Transcriptional regulat 80.3 6.2 0.00021 29.1 7.2 57 4-69 34-90 (150)
74 3u2r_A Regulatory protein MARR 80.2 16 0.00056 27.4 10.6 68 5-81 42-112 (168)
75 3na7_A HP0958; flagellar bioge 80.1 25 0.00084 29.3 13.0 16 151-166 88-103 (256)
76 3kp7_A Transcriptional regulat 80.0 15 0.00053 26.9 10.6 51 6-67 35-85 (151)
77 3nrv_A Putative transcriptiona 79.8 15 0.00052 26.7 9.5 54 6-69 37-90 (148)
78 2lnb_A Z-DNA-binding protein 1 79.2 3 0.0001 29.7 4.6 59 9-78 17-75 (80)
79 2p1m_A SKP1-like protein 1A; F 78.9 1.4 4.9E-05 34.5 3.3 44 160-205 96-144 (160)
80 2zkz_A Transcriptional repress 78.9 3 0.0001 29.5 4.8 67 11-87 27-93 (99)
81 1lj9_A Transcriptional regulat 78.9 16 0.00054 26.4 10.8 55 5-69 25-79 (144)
82 3jw4_A Transcriptional regulat 78.6 6.6 0.00023 28.9 6.9 55 5-68 37-92 (148)
83 2dq0_A Seryl-tRNA synthetase; 78.2 9.8 0.00034 34.8 9.1 66 80-148 31-96 (455)
84 1wle_A Seryl-tRNA synthetase; 78.2 11 0.00037 35.1 9.5 69 80-148 70-143 (501)
85 3b73_A PHIH1 repressor-like pr 78.0 3 0.0001 31.1 4.6 63 10-82 12-74 (111)
86 2jt1_A PEFI protein; solution 77.1 2.2 7.5E-05 29.8 3.4 58 12-76 5-68 (77)
87 2nnn_A Probable transcriptiona 77.1 14 0.00049 26.3 8.2 53 6-68 35-87 (140)
88 1u5t_B Defective in vacuolar p 76.9 3.8 0.00013 32.7 5.3 65 8-75 96-162 (169)
89 3boq_A Transcriptional regulat 76.6 19 0.00066 26.4 9.1 55 6-69 44-98 (160)
90 3ech_A MEXR, multidrug resista 76.3 9.6 0.00033 27.7 7.1 55 5-69 33-87 (142)
91 3s2w_A Transcriptional regulat 76.3 20 0.00068 26.6 9.1 54 5-68 46-99 (159)
92 1m6e_X S-adenosyl-L-methionnin 76.0 1.4 4.7E-05 39.4 2.6 35 47-81 226-260 (359)
93 2dfs_A Myosin-5A; myosin-V, in 75.9 27 0.00093 35.4 12.3 21 153-173 1023-1043(1080)
94 2bv6_A MGRA, HTH-type transcri 75.8 10 0.00036 27.4 7.2 66 5-80 33-100 (142)
95 2wt7_B Transcription factor MA 75.8 20 0.00068 25.9 9.4 80 45-148 3-82 (90)
96 1vcs_A Vesicle transport throu 75.8 12 0.0004 27.3 7.3 62 83-149 34-95 (102)
97 1qgp_A Protein (double strande 75.5 4.2 0.00014 28.0 4.6 56 13-77 16-73 (77)
98 1z7u_A Hypothetical protein EF 75.4 20 0.00067 25.7 8.8 47 15-69 26-72 (112)
99 1i1g_A Transcriptional regulat 75.3 4.6 0.00016 29.8 5.1 46 11-64 4-49 (141)
100 2eqb_B RAB guanine nucleotide 75.0 22 0.00075 26.1 9.1 59 80-144 5-63 (97)
101 1r7j_A Conserved hypothetical 74.6 8.7 0.0003 27.3 6.2 27 43-69 30-56 (95)
102 3qne_A Seryl-tRNA synthetase, 74.5 15 0.00052 34.1 9.3 65 81-148 34-98 (485)
103 2rdp_A Putative transcriptiona 74.2 22 0.00076 25.7 8.9 55 4-68 37-91 (150)
104 3oop_A LIN2960 protein; protei 74.0 22 0.00076 25.6 9.5 68 4-81 32-101 (143)
105 3eco_A MEPR; mutlidrug efflux 73.9 22 0.00075 25.5 9.7 56 5-69 27-83 (139)
106 2esh_A Conserved hypothetical 73.6 23 0.00079 25.6 10.0 75 13-91 15-96 (118)
107 3bdd_A Regulatory protein MARR 73.3 17 0.00057 26.0 7.7 53 6-68 28-80 (142)
108 2lkp_A Transcriptional regulat 73.3 11 0.00037 27.0 6.6 35 43-77 55-89 (119)
109 4ham_A LMO2241 protein; struct 72.7 16 0.00054 27.2 7.6 28 43-70 48-76 (134)
110 2jee_A YIIU; FTSZ, septum, coi 72.7 23 0.00078 25.2 8.6 26 89-114 8-33 (81)
111 2vxz_A Pyrsv_GP04; viral prote 72.7 8.8 0.0003 30.6 6.2 65 1-78 1-68 (165)
112 2o0y_A Transcriptional regulat 72.5 2.5 8.5E-05 35.3 3.3 59 4-69 16-74 (260)
113 3bro_A Transcriptional regulat 72.5 23 0.0008 25.2 10.0 55 5-68 30-85 (141)
114 3qph_A TRMB, A global transcri 71.9 11 0.00037 33.0 7.4 40 40-80 39-78 (342)
115 2qvo_A Uncharacterized protein 71.6 11 0.00037 26.1 6.1 55 12-73 13-70 (95)
116 2cyy_A Putative HTH-type trans 71.5 7.5 0.00026 29.3 5.6 65 9-81 5-79 (151)
117 2ke4_A CDC42-interacting prote 71.4 11 0.00038 27.5 6.2 23 127-149 61-83 (98)
118 1mkm_A ICLR transcriptional re 71.2 5.3 0.00018 32.9 5.0 54 6-66 3-56 (249)
119 2e1n_A PEX, period extender; c 70.9 18 0.00063 27.5 7.7 85 3-90 26-116 (138)
120 2dfs_A Myosin-5A; myosin-V, in 70.8 24 0.00084 35.7 10.6 14 135-148 1023-1036(1080)
121 2jee_A YIIU; FTSZ, septum, coi 70.8 24 0.0008 25.1 7.6 29 83-111 9-37 (81)
122 2qyw_A Vesicle transport throu 70.8 22 0.00076 25.8 7.8 52 121-172 45-97 (102)
123 2f23_A Anti-cleavage anti-GREA 70.5 30 0.001 26.8 9.0 64 89-152 12-77 (156)
124 2fbh_A Transcriptional regulat 70.3 27 0.00092 25.0 10.3 56 5-69 33-88 (146)
125 1j5y_A Transcriptional regulat 69.8 2.9 0.0001 33.1 3.0 54 7-67 17-71 (187)
126 1w7p_D VPS36P, YLR417W; ESCRT- 69.8 4.6 0.00016 38.3 4.7 62 10-76 493-558 (566)
127 3neu_A LIN1836 protein; struct 69.4 11 0.00037 27.9 6.0 24 43-66 47-70 (125)
128 1m1j_B Fibrinogen beta chain; 69.2 52 0.0018 30.3 11.6 100 85-184 98-199 (464)
129 2cfx_A HTH-type transcriptiona 69.0 8.7 0.0003 28.7 5.4 64 9-80 3-76 (144)
130 2fa5_A Transcriptional regulat 68.9 14 0.00048 27.3 6.6 54 5-68 45-98 (162)
131 2qww_A Transcriptional regulat 68.7 17 0.00057 26.7 6.9 50 6-65 38-87 (154)
132 2y75_A HTH-type transcriptiona 68.6 10 0.00035 27.8 5.6 62 11-80 9-73 (129)
133 3lss_A Seryl-tRNA synthetase; 68.5 24 0.00083 32.7 9.2 33 83-115 40-72 (484)
134 2hzt_A Putative HTH-type trans 67.0 8.3 0.00028 27.5 4.7 48 14-69 17-64 (107)
135 3ccy_A Putative TETR-family tr 66.8 38 0.0013 25.4 12.8 57 1-82 4-60 (203)
136 2hr3_A Probable transcriptiona 66.6 33 0.0011 24.7 9.0 54 6-68 32-85 (147)
137 2fbi_A Probable transcriptiona 66.4 32 0.0011 24.4 10.7 54 5-68 32-85 (142)
138 3eqx_A FIC domain containing t 65.8 5.5 0.00019 35.4 4.2 56 15-79 301-356 (373)
139 3vkg_A Dynein heavy chain, cyt 65.7 87 0.003 35.7 14.2 30 83-112 1972-2001(3245)
140 3lmm_A Uncharacterized protein 65.2 1.3 4.5E-05 41.9 0.0 62 5-74 510-571 (583)
141 1g6u_A Domain swapped dimer; d 64.9 22 0.00076 22.1 6.3 42 106-147 5-46 (48)
142 2nyx_A Probable transcriptiona 64.8 35 0.0012 25.6 8.3 53 6-68 42-94 (168)
143 2efj_A 3,7-dimethylxanthine me 64.7 2.1 7E-05 38.6 1.2 32 49-80 240-271 (384)
144 3u59_A Tropomyosin beta chain; 64.0 38 0.0013 24.4 11.5 60 84-149 6-65 (101)
145 2pn6_A ST1022, 150AA long hypo 64.0 12 0.00042 27.9 5.4 54 10-71 2-62 (150)
146 3cvf_A Homer-3, homer protein 63.9 29 0.00098 24.5 6.8 31 87-117 13-43 (79)
147 3df8_A Possible HXLR family tr 63.8 37 0.0013 24.3 7.9 57 14-80 30-88 (111)
148 2g7u_A Transcriptional regulat 63.8 6.5 0.00022 32.5 4.1 56 4-66 7-62 (257)
149 2ia2_A Putative transcriptiona 63.5 5.1 0.00017 33.4 3.4 56 4-66 14-69 (265)
150 2vn2_A DNAD, chromosome replic 63.5 8.5 0.00029 28.7 4.3 56 4-67 27-85 (128)
151 2p5k_A Arginine repressor; DNA 63.5 12 0.00043 23.5 4.6 59 9-75 3-62 (64)
152 2e1c_A Putative HTH-type trans 63.4 12 0.00041 29.2 5.4 64 9-80 25-98 (171)
153 1ses_A Seryl-tRNA synthetase; 63.1 21 0.00071 32.2 7.6 64 80-148 28-91 (421)
154 3tqn_A Transcriptional regulat 62.9 3.3 0.00011 30.2 1.9 35 43-79 43-77 (113)
155 2eth_A Transcriptional regulat 62.9 42 0.0014 24.5 8.7 53 6-68 41-93 (154)
156 3hsr_A HTH-type transcriptiona 62.9 19 0.00065 26.1 6.2 55 4-68 31-85 (140)
157 4dzn_A Coiled-coil peptide CC- 62.7 14 0.00049 21.3 4.1 25 90-114 5-29 (33)
158 1c1g_A Tropomyosin; contractIl 62.6 52 0.0018 25.5 12.5 30 155-184 253-282 (284)
159 3by6_A Predicted transcription 62.5 12 0.00039 27.9 4.9 28 43-71 45-72 (126)
160 3ic7_A Putative transcriptiona 62.5 3.5 0.00012 30.8 1.9 26 41-66 43-68 (126)
161 3crj_A Transcription regulator 61.5 4.1 0.00014 31.3 2.3 57 1-82 4-60 (199)
162 1jgs_A Multiple antibiotic res 61.2 38 0.0013 24.0 7.6 56 4-69 29-84 (138)
163 2pg4_A Uncharacterized protein 61.0 12 0.00041 25.8 4.5 66 13-86 17-83 (95)
164 2ras_A Transcriptional regulat 60.9 2.6 9.1E-05 32.2 1.0 56 1-82 2-57 (212)
165 1xma_A Predicted transcription 60.8 43 0.0015 25.4 8.1 70 13-84 43-117 (145)
166 2xdn_A HTH-type transcriptiona 60.7 2.9 0.0001 32.1 1.3 57 1-82 1-57 (210)
167 2b0l_A GTP-sensing transcripti 60.4 9.6 0.00033 27.5 4.0 27 43-69 53-79 (102)
168 3u1c_A Tropomyosin alpha-1 cha 59.6 47 0.0016 24.0 11.2 59 85-149 7-65 (101)
169 2w25_A Probable transcriptiona 59.5 12 0.0004 28.1 4.5 55 9-71 5-66 (150)
170 3f8b_A Transcriptional regulat 59.4 47 0.0016 24.0 8.4 70 15-86 16-90 (116)
171 2dql_A PEX protein; circadian 59.4 48 0.0016 24.0 8.9 82 7-91 18-105 (115)
172 1yyv_A Putative transcriptiona 59.2 12 0.00041 28.0 4.5 58 15-80 39-98 (131)
173 2p5v_A Transcriptional regulat 59.0 20 0.00069 27.2 5.9 65 8-80 7-81 (162)
174 3f8m_A GNTR-family protein tra 59.0 4.2 0.00014 33.8 2.0 30 43-74 46-75 (248)
175 2dq3_A Seryl-tRNA synthetase; 58.9 11 0.00036 34.2 4.8 65 80-147 30-94 (425)
176 1z91_A Organic hydroperoxide r 58.5 12 0.00042 27.1 4.4 55 4-68 35-89 (147)
177 3oja_A Leucine-rich immune mol 58.4 1E+02 0.0034 27.4 11.9 11 72-82 346-356 (487)
178 3cjd_A Transcriptional regulat 57.6 3.1 0.00011 32.0 0.9 57 1-82 2-58 (198)
179 2cg4_A Regulatory protein ASNC 57.5 17 0.00059 27.2 5.2 55 9-71 6-67 (152)
180 3bja_A Transcriptional regulat 57.5 47 0.0016 23.4 11.3 55 4-68 28-82 (139)
181 3k0l_A Repressor protein; heli 57.4 55 0.0019 24.1 11.2 54 5-68 42-95 (162)
182 3jsv_C NF-kappa-B essential mo 57.3 21 0.00072 26.0 5.3 67 82-148 18-88 (94)
183 2fsw_A PG_0823 protein; alpha- 57.3 15 0.00051 26.0 4.5 45 34-81 43-89 (107)
184 3ghg_A Fibrinogen alpha chain; 57.1 1E+02 0.0036 29.0 11.1 98 84-185 61-163 (562)
185 3on2_A Probable transcriptiona 56.9 21 0.00073 26.2 5.6 56 3-83 4-59 (199)
186 3oja_B Anopheles plasmodium-re 56.8 1.1E+02 0.0039 27.6 14.1 34 82-115 458-491 (597)
187 2zfw_A PEX; five alpha-helices 56.6 26 0.00088 27.1 6.1 83 4-89 37-125 (148)
188 3e6m_A MARR family transcripti 56.6 57 0.0019 24.0 9.2 53 6-68 50-102 (161)
189 1jcd_A Major outer membrane li 56.6 38 0.0013 22.0 6.4 40 130-173 6-45 (52)
190 3b5i_A S-adenosyl-L-methionine 56.1 3.9 0.00013 36.5 1.4 33 48-80 245-277 (374)
191 3cdh_A Transcriptional regulat 56.0 54 0.0019 23.8 7.8 54 5-68 39-92 (155)
192 2fbk_A Transcriptional regulat 55.8 64 0.0022 24.4 9.0 55 5-68 65-121 (181)
193 3cjn_A Transcriptional regulat 55.1 59 0.002 23.8 11.1 54 5-68 48-101 (162)
194 1bm9_A RTP, TER, replication t 55.1 66 0.0022 24.3 9.0 67 16-83 23-96 (122)
195 3a7p_A Autophagy protein 16; c 55.0 76 0.0026 25.0 10.9 58 86-149 67-124 (152)
196 2p4v_A Transcription elongatio 54.8 60 0.002 25.2 8.1 64 89-152 11-77 (158)
197 2xrn_A HTH-type transcriptiona 54.6 21 0.00072 29.1 5.6 54 7-67 2-55 (241)
198 4etp_A Kinesin-like protein KA 54.5 42 0.0014 30.0 8.0 54 90-149 6-59 (403)
199 3r4k_A Transcriptional regulat 54.2 8.4 0.00029 32.0 3.1 55 6-67 1-55 (260)
200 1grj_A GREA protein; transcrip 54.0 60 0.0021 25.1 8.0 65 89-153 11-78 (158)
201 3fx7_A Putative uncharacterize 54.0 60 0.0021 23.5 8.8 58 130-187 22-79 (94)
202 2wui_A MEXZ, transcriptional r 53.4 3.7 0.00013 31.7 0.7 57 1-82 1-57 (210)
203 2pms_C Pneumococcal surface pr 53.2 55 0.0019 25.0 7.3 29 89-117 63-91 (125)
204 2yy0_A C-MYC-binding protein; 52.6 27 0.00092 22.6 4.7 29 82-110 21-49 (53)
205 1v4r_A Transcriptional repress 52.5 3.9 0.00013 29.0 0.7 25 43-67 45-69 (102)
206 2v79_A DNA replication protein 52.3 11 0.00038 28.7 3.3 37 24-67 49-85 (135)
207 3l7w_A Putative uncharacterize 52.0 59 0.002 23.0 7.1 65 14-84 12-80 (108)
208 2ek5_A Predicted transcription 50.9 40 0.0014 25.0 6.2 24 43-66 38-61 (129)
209 3u1d_A Uncharacterized protein 50.8 32 0.0011 26.9 5.8 69 11-85 29-105 (151)
210 1i84_S Smooth muscle myosin he 50.6 1.2E+02 0.0041 30.8 11.4 27 85-111 862-888 (1184)
211 3i4p_A Transcriptional regulat 50.6 36 0.0012 25.9 6.1 63 10-80 2-74 (162)
212 3lwj_A Putative TETR-family tr 50.6 26 0.00089 26.0 5.2 57 1-82 2-58 (202)
213 1ylf_A RRF2 family protein; st 49.6 11 0.00036 28.7 2.8 59 15-81 18-77 (149)
214 2zqm_A Prefoldin beta subunit 49.4 53 0.0018 23.4 6.6 50 60-111 51-101 (117)
215 2dbb_A Putative HTH-type trans 49.3 32 0.0011 25.5 5.5 54 9-70 7-67 (151)
216 3f0c_A TETR-molecule A, transc 49.2 15 0.00053 27.7 3.7 57 1-82 1-57 (216)
217 3ihu_A Transcriptional regulat 48.8 97 0.0033 24.4 9.1 29 43-71 49-78 (222)
218 2jsp_A Transcriptional regulat 48.6 10 0.00034 27.4 2.3 27 178-204 33-59 (87)
219 2p22_C Protein SRN2; endosome, 48.4 1.1E+02 0.0036 24.8 12.5 112 43-176 33-147 (192)
220 2jn6_A Protein CGL2762, transp 48.1 9.7 0.00033 26.4 2.2 52 1-62 1-52 (97)
221 3vkg_A Dynein heavy chain, cyt 47.9 2.9E+02 0.0098 31.7 14.5 16 165-180 2082-2097(3245)
222 2l5g_B Putative uncharacterize 47.0 46 0.0016 20.7 4.9 29 85-113 7-35 (42)
223 3b81_A Transcriptional regulat 46.9 38 0.0013 25.1 5.6 56 1-82 2-57 (203)
224 3mq0_A Transcriptional repress 46.5 23 0.0008 29.6 4.7 56 5-67 24-79 (275)
225 1fxk_C Protein (prefoldin); ar 46.5 47 0.0016 24.5 6.0 45 68-112 76-120 (133)
226 2frh_A SARA, staphylococcal ac 46.3 35 0.0012 24.6 5.2 56 5-69 33-89 (127)
227 3mq7_A Bone marrow stromal ant 46.3 94 0.0032 23.5 10.9 58 95-165 47-104 (121)
228 2ys9_A Homeobox and leucine zi 46.2 13 0.00046 25.7 2.6 40 17-60 21-60 (70)
229 4esb_A Transcriptional regulat 46.0 81 0.0028 22.7 8.2 66 15-84 13-83 (115)
230 2hgc_A YJCQ protein; SR346, st 45.9 10 0.00034 28.0 2.0 34 38-71 21-54 (102)
231 2ia0_A Putative HTH-type trans 45.5 38 0.0013 26.2 5.6 62 10-79 16-86 (171)
232 3v2d_2 50S ribosomal protein L 45.5 60 0.002 22.2 5.9 47 124-170 19-65 (72)
233 2pex_A Transcriptional regulat 45.4 27 0.00092 25.5 4.5 55 4-68 42-96 (153)
234 1i84_S Smooth muscle myosin he 45.3 89 0.0031 31.7 9.5 18 129-146 921-938 (1184)
235 3tnu_B Keratin, type II cytosk 45.1 93 0.0032 23.1 8.8 33 82-114 38-70 (129)
236 1iuf_A Centromere ABP1 protein 45.0 12 0.00042 28.3 2.5 52 1-56 4-59 (144)
237 2iu5_A DHAS, YCEG, HTH-type dh 44.6 12 0.0004 28.3 2.3 51 7-82 8-59 (195)
238 4etp_A Kinesin-like protein KA 44.5 28 0.00096 31.2 5.2 53 82-134 5-58 (403)
239 2co5_A Viral protein F93; vira 44.5 39 0.0013 24.2 5.1 71 12-87 10-83 (99)
240 3tnu_A Keratin, type I cytoske 44.5 96 0.0033 23.1 8.3 33 82-114 40-72 (131)
241 1bby_A RAP30; average structur 44.5 18 0.00062 24.8 3.0 60 8-80 5-64 (69)
242 2yy0_A C-MYC-binding protein; 44.3 47 0.0016 21.4 4.9 31 118-148 16-46 (53)
243 1stz_A Heat-inducible transcri 44.2 16 0.00055 31.9 3.5 58 9-71 15-76 (338)
244 1r73_A TM1492, 50S ribosomal p 44.0 70 0.0024 21.4 7.1 47 124-170 12-58 (66)
245 1rkt_A Protein YFIR; transcrip 43.9 42 0.0014 25.2 5.5 49 10-83 11-59 (205)
246 1uly_A Hypothetical protein PH 43.8 25 0.00086 28.0 4.3 53 9-70 18-73 (192)
247 3f1b_A TETR-like transcription 43.6 11 0.00038 28.1 2.0 57 1-82 3-60 (203)
248 3lay_A Zinc resistance-associa 43.6 95 0.0032 24.7 7.7 36 134-169 91-129 (175)
249 3ri2_A Transcriptional regulat 43.4 96 0.0033 22.8 8.0 65 15-84 25-92 (123)
250 3iv1_A Tumor susceptibility ge 43.3 83 0.0028 22.0 7.2 52 92-149 16-67 (78)
251 1ic2_A Tropomyosin alpha chain 43.2 78 0.0027 21.7 11.6 59 85-149 4-62 (81)
252 1fxk_A Prefoldin; archaeal pro 43.1 83 0.0028 22.0 6.7 54 59-114 45-99 (107)
253 2x4h_A Hypothetical protein SS 43.1 89 0.003 22.3 7.5 53 6-67 10-65 (139)
254 2qib_A TETR-family transcripti 43.0 12 0.00042 29.2 2.3 54 4-82 6-59 (231)
255 2zdi_C Prefoldin subunit alpha 43.0 47 0.0016 25.3 5.6 45 68-112 86-130 (151)
256 4a5n_A Uncharacterized HTH-typ 42.9 34 0.0012 25.8 4.7 45 34-81 44-90 (131)
257 3j21_W 50S ribosomal protein L 42.8 77 0.0026 21.6 6.6 47 124-170 12-59 (72)
258 4esf_A PADR-like transcription 42.7 94 0.0032 22.5 8.2 68 15-86 15-87 (117)
259 3oja_B Anopheles plasmodium-re 42.5 1.9E+02 0.0066 26.0 11.4 32 80-111 463-494 (597)
260 2zjr_V 50S ribosomal protein L 42.1 76 0.0026 21.2 6.8 48 123-170 11-58 (67)
261 3lay_A Zinc resistance-associa 41.8 1.3E+02 0.0045 23.9 10.2 68 76-143 67-135 (175)
262 2wv0_A YVOA, HTH-type transcri 41.7 11 0.00037 31.1 1.8 30 43-73 44-73 (243)
263 2v7f_A RPS19, RPS19E SSU ribos 41.5 11 0.00039 29.3 1.9 22 45-66 93-114 (150)
264 3c7j_A Transcriptional regulat 41.1 1E+02 0.0034 24.9 7.7 28 43-70 59-87 (237)
265 2w53_A Repressor, SMet; antibi 41.1 4.7 0.00016 31.1 -0.5 57 1-82 1-57 (219)
266 2nx4_A Transcriptional regulat 41.1 5.6 0.00019 30.3 -0.0 51 7-82 6-56 (194)
267 1hw1_A FADR, fatty acid metabo 40.8 9.2 0.00032 30.7 1.3 28 43-70 41-69 (239)
268 1on2_A Transcriptional regulat 40.7 49 0.0017 24.0 5.3 48 13-68 10-57 (142)
269 2c5k_T Syntaxin TLG1, T-snare 40.3 99 0.0034 22.1 7.3 52 90-144 39-91 (95)
270 3sxy_A Transcriptional regulat 40.1 63 0.0021 25.4 6.2 29 43-71 45-74 (218)
271 3e3v_A Regulatory protein RECX 40.1 33 0.0011 27.0 4.4 46 19-68 25-70 (177)
272 1ik9_A DNA repair protein XRCC 40.0 58 0.002 26.8 6.0 20 124-143 156-175 (213)
273 3u06_A Protein claret segregat 39.8 1E+02 0.0035 27.6 8.2 53 91-149 7-59 (412)
274 2ke4_A CDC42-interacting prote 39.8 1E+02 0.0036 22.2 7.1 33 150-185 55-87 (98)
275 1vq8_V 50S ribosomal protein L 39.7 86 0.003 21.2 6.4 47 124-170 15-62 (71)
276 2lf0_A Uncharacterized protein 39.7 1.2E+02 0.0042 22.9 7.7 50 92-142 8-57 (123)
277 3d5a_X RF1, peptide chain rele 39.6 2E+02 0.0069 25.5 10.7 28 151-178 67-94 (354)
278 2hyj_A Putative TETR-family tr 39.5 15 0.0005 28.0 2.2 57 1-82 1-58 (200)
279 2gfn_A HTH-type transcriptiona 39.3 7.9 0.00027 29.9 0.6 55 1-82 1-55 (209)
280 2fxo_A Myosin heavy chain, car 39.1 1.2E+02 0.004 22.6 9.5 65 85-149 32-97 (129)
281 3kz9_A SMCR; transcriptional r 39.1 79 0.0027 23.1 6.3 54 4-82 10-63 (206)
282 1gd2_E Transcription factor PA 38.9 79 0.0027 21.5 5.6 22 126-147 48-69 (70)
283 3qh9_A Liprin-beta-2; coiled-c 38.7 1E+02 0.0035 21.8 7.4 25 125-149 23-47 (81)
284 1pb6_A Hypothetical transcript 38.5 13 0.00045 27.9 1.7 54 4-82 11-64 (212)
285 3q8t_A Beclin-1; autophagy, AT 37.7 1.1E+02 0.0038 21.8 9.0 11 128-138 39-49 (96)
286 3o0z_A RHO-associated protein 37.5 1.6E+02 0.0053 23.5 13.4 58 85-148 53-110 (168)
287 2xv5_A Lamin-A/C; structural p 37.3 99 0.0034 21.2 8.0 49 95-149 6-54 (74)
288 2h09_A Transcriptional regulat 37.0 58 0.002 24.0 5.2 25 43-67 64-88 (155)
289 1z6r_A MLC protein; transcript 37.0 26 0.0009 30.5 3.7 45 13-65 18-62 (406)
290 2ve7_A Kinetochore protein HEC 36.9 54 0.0018 28.3 5.6 35 120-154 184-218 (315)
291 2rn7_A IS629 ORFA; helix, all 36.8 39 0.0013 23.6 4.0 55 1-62 1-59 (108)
292 3hhh_A Transcriptional regulat 36.7 1.2E+02 0.0041 21.9 8.2 69 15-87 17-90 (116)
293 3nmd_A CGMP dependent protein 36.6 76 0.0026 21.9 5.2 39 61-110 11-49 (72)
294 3kfw_X Uncharacterized protein 36.2 33 0.0011 28.8 4.0 53 13-69 6-59 (247)
295 3elk_A Putative transcriptiona 36.0 95 0.0032 22.5 6.2 69 15-87 18-91 (117)
296 3l09_A Putative transcriptiona 35.9 33 0.0011 29.2 4.0 66 14-84 26-95 (266)
297 2f2e_A PA1607; transcription f 35.5 89 0.003 23.3 6.1 38 43-80 47-85 (146)
298 2d4y_A HAP1, flagellar HOOK-as 35.2 1.5E+02 0.005 26.6 8.5 81 99-186 42-122 (463)
299 4ioe_A Secreted protein ESXB; 34.7 1E+02 0.0035 20.6 9.5 56 130-185 25-81 (93)
300 3eet_A Putative GNTR-family tr 34.6 13 0.00045 31.2 1.3 28 43-70 63-91 (272)
301 3dfg_A Xcrecx, regulatory prot 34.5 18 0.00061 28.2 1.9 42 23-68 28-69 (162)
302 3k2z_A LEXA repressor; winged 34.4 49 0.0017 25.9 4.6 49 11-66 5-57 (196)
303 3ljl_A Transcriptional regulat 34.3 9.8 0.00033 28.0 0.4 57 1-82 4-60 (156)
304 3bwg_A Uncharacterized HTH-typ 34.1 15 0.00051 30.0 1.5 24 43-66 39-62 (239)
305 2lf0_A Uncharacterized protein 33.6 93 0.0032 23.6 5.7 45 127-171 9-54 (123)
306 3twe_A Alpha4H; unknown functi 33.0 64 0.0022 17.7 3.6 21 124-144 4-24 (27)
307 2c5k_T Syntaxin TLG1, T-snare 32.9 1.3E+02 0.0045 21.4 8.5 51 120-170 35-85 (95)
308 3d5l_A Regulatory protein RECX 32.9 39 0.0014 27.5 3.9 44 21-68 70-113 (221)
309 3edp_A LIN2111 protein; APC883 32.8 16 0.00056 29.9 1.5 28 43-70 43-71 (236)
310 1lrz_A FEMA, factor essential 32.7 1E+02 0.0035 27.1 6.9 53 86-145 246-298 (426)
311 4e81_A Chaperone protein DNAK; 32.5 1.8E+02 0.0062 23.5 7.9 7 60-66 93-99 (219)
312 3htk_A Structural maintenance 32.4 97 0.0033 19.6 8.0 17 128-144 40-56 (60)
313 3c1d_A Protein ORAA, regulator 32.4 47 0.0016 25.5 4.1 47 18-67 11-66 (159)
314 1cxz_B Protein (PKN); protein- 32.2 1.4E+02 0.0046 21.3 6.2 27 122-148 57-83 (86)
315 2f07_A YVDT; helix-turn-helix, 32.1 13 0.00044 28.2 0.7 49 10-83 9-57 (197)
316 3r8s_Y 50S ribosomal protein L 32.0 52 0.0018 21.8 3.7 47 123-169 11-57 (63)
317 1l8d_A DNA double-strand break 31.9 1.4E+02 0.0046 21.2 12.0 33 83-115 13-45 (112)
318 2fxa_A Protease production reg 31.6 50 0.0017 26.1 4.3 55 5-69 44-98 (207)
319 1tc3_C Protein (TC3 transposas 31.3 57 0.002 18.4 3.6 48 3-61 2-49 (51)
320 4emc_A Monopolin complex subun 31.0 2.1E+02 0.0073 23.2 8.8 25 165-189 60-84 (190)
321 1kd8_B GABH BLL, GCN4 acid bas 30.9 88 0.003 18.7 5.5 29 83-111 4-32 (36)
322 1u00_A HSC66, chaperone protei 30.9 2.1E+02 0.0071 23.0 8.7 7 60-66 90-96 (227)
323 1xd7_A YWNA; structural genomi 30.1 32 0.0011 25.8 2.7 39 43-82 33-71 (145)
324 1z05_A Transcriptional regulat 30.0 37 0.0013 29.9 3.5 46 13-66 41-86 (429)
325 2hyt_A TETR-family transcripti 29.8 28 0.00095 26.2 2.3 58 1-83 2-59 (197)
326 4ad8_A DNA repair protein RECN 29.8 3E+02 0.01 24.6 10.2 28 150-177 261-288 (517)
327 3gp4_A Transcriptional regulat 29.5 1.4E+02 0.0046 22.5 6.3 73 20-111 40-112 (142)
328 2rek_A Putative TETR-family tr 29.5 17 0.00058 27.3 1.0 54 4-83 9-62 (199)
329 1xn7_A Hypothetical protein YH 29.2 38 0.0013 23.3 2.7 43 14-64 5-47 (78)
330 1yke_B RNA polymerase II holoe 29.1 2E+02 0.0068 22.2 9.7 55 122-183 86-140 (151)
331 2l5g_B Putative uncharacterize 28.8 1.1E+02 0.0037 19.0 4.8 24 85-108 14-37 (42)
332 3g7r_A Putative transcriptiona 28.7 72 0.0025 24.3 4.7 54 5-83 29-82 (221)
333 3egq_A TETR family transcripti 28.6 31 0.001 25.1 2.3 31 43-82 20-50 (170)
334 1t2k_D Cyclic-AMP-dependent tr 28.6 1.2E+02 0.0041 19.5 5.5 19 124-142 39-57 (61)
335 3u06_A Protein claret segregat 28.5 63 0.0022 29.0 4.8 53 82-134 5-58 (412)
336 2di3_A Bacterial regulatory pr 28.5 62 0.0021 25.9 4.4 23 43-65 38-60 (239)
337 2zqm_A Prefoldin beta subunit 28.4 1.6E+02 0.0054 20.8 12.7 32 84-115 17-48 (117)
338 3t8r_A Staphylococcus aureus C 28.3 47 0.0016 25.0 3.4 61 15-82 15-77 (143)
339 1gax_A Valrs, valyl-tRNA synth 28.2 1.4E+02 0.0049 29.3 7.6 77 69-147 784-861 (862)
340 3etw_A Adhesin A; antiparallel 28.2 1.9E+02 0.0065 21.7 10.1 59 85-149 7-65 (119)
341 1ldd_A APC2WHB, anaphase promo 28.1 27 0.00092 24.2 1.8 22 44-65 44-65 (74)
342 3bbo_Z Ribosomal protein L29; 28.0 1.3E+02 0.0043 24.2 5.9 47 124-170 76-122 (173)
343 2zvf_A Alanyl-tRNA synthetase; 27.9 1.6E+02 0.0054 22.3 6.5 23 124-146 35-57 (171)
344 2hs5_A Putative transcriptiona 27.9 85 0.0029 25.3 5.1 28 43-70 61-89 (239)
345 2k02_A Ferrous iron transport 27.9 42 0.0014 23.8 2.8 46 14-67 5-50 (87)
346 3iz5_c 60S ribosomal protein L 27.6 1.3E+02 0.0045 22.7 5.7 48 124-171 17-64 (124)
347 1zbt_A RF-1, peptide chain rel 27.5 1.4E+02 0.0047 26.8 6.7 75 74-148 38-114 (371)
348 2xzm_7 Plectin/S10 domain cont 27.2 58 0.002 25.9 3.7 71 12-87 8-78 (162)
349 2e7s_A RAB guanine nucleotide 27.1 1.5E+02 0.005 22.8 6.0 40 99-144 44-83 (135)
350 3viq_A SWI5-dependent recombin 26.9 2E+02 0.0068 21.5 11.8 15 190-204 96-110 (122)
351 3mq9_A Bone marrow stromal ant 26.9 2.7E+02 0.0092 24.4 8.7 10 80-89 373-382 (471)
352 3a5t_A Transcription factor MA 26.7 5.9 0.0002 29.6 -2.0 44 44-104 12-55 (107)
353 1a93_B MAX protein, coiled coi 26.6 1.1E+02 0.0036 18.2 4.5 26 85-110 5-30 (34)
354 2dq0_A Seryl-tRNA synthetase; 26.5 2.1E+02 0.0073 25.8 8.0 29 121-149 38-66 (455)
355 3u5c_K 40S ribosomal protein S 26.3 74 0.0025 23.6 4.0 70 12-87 7-78 (105)
356 1yzm_A FYVE-finger-containing 26.3 1.3E+02 0.0045 19.3 5.4 41 100-141 8-48 (51)
357 3dpj_A Transcription regulator 26.0 35 0.0012 25.2 2.3 53 5-82 2-54 (194)
358 1bia_A BIRA bifunctional prote 26.0 63 0.0022 27.6 4.2 53 10-70 4-56 (321)
359 1fxk_A Prefoldin; archaeal pro 25.9 1.7E+02 0.0058 20.3 12.1 32 83-114 11-42 (107)
360 3dv8_A Transcriptional regulat 25.9 77 0.0026 24.0 4.3 53 7-66 146-202 (220)
361 1zhc_A Hypothetical protein HP 25.6 1.1E+02 0.0039 20.8 4.7 45 95-146 18-62 (76)
362 4e61_A Protein BIM1; EB1-like 25.6 87 0.003 23.2 4.2 48 83-136 7-54 (106)
363 3nqo_A MARR-family transcripti 25.6 2.2E+02 0.0075 21.6 9.8 55 6-69 38-93 (189)
364 1zhc_A Hypothetical protein HP 25.4 1.6E+02 0.0055 20.0 5.5 42 130-172 19-63 (76)
365 1zbt_A RF-1, peptide chain rel 25.3 2.8E+02 0.0094 24.8 8.3 54 124-177 56-111 (371)
366 4a17_U RPL35, 60S ribosomal pr 25.2 1.4E+02 0.0049 22.5 5.5 48 124-171 16-64 (124)
367 3d5a_X RF1, peptide chain rele 25.1 2.8E+02 0.0095 24.6 8.2 70 74-148 24-96 (354)
368 1use_A VAsp, vasodilator-stimu 25.0 1.3E+02 0.0046 18.9 5.7 27 153-185 15-41 (45)
369 4gkw_A Spindle assembly abnorm 25.0 2.4E+02 0.0082 21.8 9.5 25 89-113 13-37 (167)
370 3qne_A Seryl-tRNA synthetase, 24.8 3.7E+02 0.013 24.7 9.3 29 121-149 40-68 (485)
371 4aci_A HTH-type transcriptiona 24.7 9.9 0.00034 28.3 -1.1 56 4-84 7-62 (191)
372 3vib_A MTRR; helix-turn-helix 24.7 23 0.00078 26.9 1.0 56 1-82 1-56 (210)
373 2k48_A Nucleoprotein; viral pr 24.6 2.1E+02 0.0073 21.1 8.9 60 87-146 35-100 (107)
374 1z0k_B FYVE-finger-containing 24.5 1.2E+02 0.0042 20.6 4.6 42 99-141 25-66 (69)
375 2a3d_A Protein (de novo three- 24.4 67 0.0023 21.5 3.1 41 129-170 27-68 (73)
376 3qao_A LMO0526 protein, MERR-l 24.4 2.5E+02 0.0086 23.0 7.5 70 25-117 40-113 (249)
377 2fq4_A Transcriptional regulat 24.2 25 0.00086 26.3 1.1 30 44-82 29-58 (192)
378 3bjb_A Probable transcriptiona 24.2 31 0.0011 26.3 1.7 52 6-82 17-68 (207)
379 2p8t_A Hypothetical protein PH 24.1 39 0.0013 27.6 2.3 25 43-67 40-64 (200)
380 2lw1_A ABC transporter ATP-bin 23.9 1.8E+02 0.0062 20.0 8.2 49 125-173 26-80 (89)
381 4b8x_A SCO5413, possible MARR- 23.9 1.6E+02 0.0056 21.4 5.7 71 5-84 31-103 (147)
382 2ocy_A RAB guanine nucleotide 23.8 2.6E+02 0.009 21.8 7.0 66 83-148 75-142 (154)
383 2qlz_A Transcription factor PF 23.7 35 0.0012 28.2 2.0 31 43-73 188-218 (232)
384 1zk8_A Transcriptional regulat 23.7 1.9E+02 0.0067 20.7 6.1 31 43-82 24-54 (183)
385 1r8d_A Transcription activator 23.6 1.8E+02 0.0062 20.4 5.7 63 25-110 39-105 (109)
386 1jnm_A Proto-oncogene C-JUN; B 23.5 1.3E+02 0.0044 19.5 4.5 17 124-140 39-55 (62)
387 3b02_A Transcriptional regulat 23.3 60 0.002 24.5 3.2 58 7-67 110-173 (195)
388 1gk6_A Vimentin; intermediate 23.3 1.6E+02 0.0054 19.0 5.8 26 124-149 24-49 (59)
389 1kpt_A KP4 toxin; killer toxin 23.2 26 0.00091 26.0 1.0 29 43-74 59-87 (105)
390 3ljm_A Coil Ser L9C; de novo d 23.1 1.1E+02 0.0038 17.3 4.4 22 92-113 6-27 (31)
391 2d4y_A HAP1, flagellar HOOK-as 23.0 2.3E+02 0.0079 25.2 7.5 55 85-148 69-123 (463)
392 2zhg_A Redox-sensitive transcr 23.0 2.5E+02 0.0085 21.3 7.5 48 24-84 9-56 (154)
393 3aqt_A Bacterial regulatory pr 23.0 1.6E+02 0.0055 22.8 5.8 32 43-83 62-93 (245)
394 1deb_A APC protein, adenomatou 23.0 1.6E+02 0.0054 19.0 7.1 43 124-170 6-48 (54)
395 1wle_A Seryl-tRNA synthetase; 22.9 2.5E+02 0.0085 25.9 7.8 59 121-179 77-142 (501)
396 3mq7_A Bone marrow stromal ant 22.9 1.1E+02 0.0039 23.0 4.5 7 103-109 73-79 (121)
397 3hrs_A Metalloregulator SCAR; 22.9 81 0.0028 25.1 4.0 48 23-81 17-64 (214)
398 2hoe_A N-acetylglucosamine kin 22.6 26 0.00087 30.4 1.0 44 14-66 23-66 (380)
399 3ra3_A P1C; coiled coil domain 22.3 95 0.0032 17.2 2.9 16 97-112 10-25 (28)
400 2hku_A A putative transcriptio 22.1 2.5E+02 0.0084 20.9 10.5 30 43-82 36-65 (215)
401 1whz_A Hypothetical protein; a 22.0 74 0.0025 20.8 3.1 33 46-79 3-35 (70)
402 3gpv_A Transcriptional regulat 22.0 2.3E+02 0.008 21.2 6.4 71 25-112 53-127 (148)
403 2ra5_A Putative transcriptiona 21.9 19 0.00066 29.6 0.0 28 39-66 46-73 (247)
404 2ki0_A DS119; beta-alpha-beta, 21.8 15 0.0005 21.6 -0.5 24 151-174 13-36 (36)
405 2ibd_A Possible transcriptiona 21.6 1.2E+02 0.004 22.6 4.6 53 5-82 8-60 (204)
406 1q06_A Transcriptional regulat 21.6 2.3E+02 0.0079 20.8 6.2 69 25-110 37-109 (135)
407 3lwf_A LIN1550 protein, putati 21.6 62 0.0021 25.0 2.9 51 25-82 43-93 (159)
408 2zkr_v 60S ribosomal protein L 21.6 2.6E+02 0.0089 21.0 7.2 49 123-171 14-63 (123)
409 4ev0_A Transcription regulator 21.5 47 0.0016 25.2 2.2 31 36-67 167-197 (216)
410 2fxo_A Myosin heavy chain, car 21.4 2.5E+02 0.0086 20.7 11.7 15 97-111 16-30 (129)
411 1dlc_A Delta-endotoxin CRYIIIA 21.2 5E+02 0.017 24.1 10.1 62 105-166 48-114 (584)
412 3e98_A GAF domain of unknown f 21.2 2.5E+02 0.0087 23.1 6.9 29 163-191 109-137 (252)
413 2kho_A Heat shock protein 70; 21.2 4.9E+02 0.017 23.9 10.0 39 125-163 531-570 (605)
414 3ghg_A Fibrinogen alpha chain; 21.1 2.9E+02 0.01 26.0 7.8 21 97-117 60-80 (562)
415 3loc_A HTH-type transcriptiona 21.1 58 0.002 24.1 2.6 54 4-82 11-64 (212)
416 1hjb_A Ccaat/enhancer binding 21.1 2E+02 0.007 20.2 5.4 21 128-148 50-70 (87)
417 3m9b_A Proteasome-associated A 21.1 1.8E+02 0.0063 24.5 6.0 42 101-149 54-96 (251)
418 1ses_A Seryl-tRNA synthetase; 21.0 3.1E+02 0.011 24.4 7.9 56 121-179 35-90 (421)
419 2pnv_A Small conductance calci 20.9 1.6E+02 0.0054 18.2 4.7 25 86-110 15-39 (43)
420 3cve_A Homer protein homolog 1 20.9 2.1E+02 0.0072 19.6 9.0 34 84-117 4-37 (72)
421 3l9f_A Putative uncharacterize 20.8 3.2E+02 0.011 21.7 13.4 153 14-175 39-200 (204)
422 3gpv_A Transcriptional regulat 20.8 2.7E+02 0.0092 20.8 7.3 47 26-84 16-62 (148)
423 1sig_A Sigma70, RNA polymerase 20.7 3.8E+02 0.013 22.5 9.1 47 150-199 152-198 (339)
424 3dew_A Transcriptional regulat 20.7 25 0.00084 26.0 0.4 52 6-82 3-54 (206)
425 1ji6_A Pesticidial crystal pro 20.5 5.2E+02 0.018 24.1 9.6 61 105-165 46-111 (589)
426 2v9v_A Selenocysteine-specific 20.4 84 0.0029 22.6 3.4 65 11-80 66-131 (135)
427 2guh_A Putative TETR-family tr 20.4 46 0.0016 25.7 2.0 54 4-82 32-85 (214)
428 2zcw_A TTHA1359, transcription 20.0 70 0.0024 24.1 3.0 60 7-67 117-180 (202)
No 1
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=97.10 E-value=0.00093 Score=46.67 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=62.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|++-.|||..+ ..+|.++.. ...-+.. ||-.......|+.+-||--+|..|++.|+|...+.|-..+|....+.
T Consensus 1 m~~~~~lt~~e--~~vL~~L~~-~~~~t~~---ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~~~~~ 74 (82)
T 1p6r_A 1 MKKIPQISDAE--LEVMKVIWK-HSSINTN---EVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDE 74 (82)
T ss_dssp CCCCCCCCHHH--HHHHHHHHT-SSSEEHH---HHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESCSS
T ss_pred CCccCCCCHHH--HHHHHHHHc-CCCCCHH---HHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEeecCH
Confidence 76667899876 568888887 5567999 99988876568999999999999999999999999998888765554
No 2
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.28 E-value=0.0041 Score=43.30 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcc-chhhhcchHHHHhhcccc-cCCccchHHHHHHHhhhcCcccccccccceeE
Q psy2296 4 KKGLSVEEKRTGLLELFHEKE-EFFQLKLIIELEKLAPKE-KGIISQSVKEILQSLVDDGLVESEKIGTSTYF 74 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~-~~f~lK~~~ElEK~~pK~-~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~Y 74 (208)
.+|+-....|..||++|.+.. ..++.. ||-..+.+. .||+..||=-.|+.|++.|+|.....|....+
T Consensus 10 ~~g~~~t~~r~~IL~~l~~~~~~~~s~~---el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~ 79 (83)
T 2fu4_A 10 KAGLKVTLPRLKILEVLQEPDNHHVSAE---DLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSV 79 (83)
T ss_dssp HTTCCCCHHHHHHHHHHTSGGGSSBCHH---HHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEE
T ss_pred HcCCCcCHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceE
Confidence 367777788999999999887 799999 998887653 38999999999999999999998887544433
No 3
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=96.17 E-value=0.03 Score=42.65 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=59.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|++-+|||..| -.||.++......-+.+ ||-.......|+.+-||--+|+.|++.|+|...+.|-..+|....+.
T Consensus 1 m~~~~~lt~~e--~~vL~~L~~~~~~~t~~---el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~ 75 (138)
T 2g9w_A 1 MAKLTRLGDLE--RAVMDHLWSRTEPQTVR---QVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGR 75 (138)
T ss_dssp --CGGGCCHHH--HHHHHHHHTCSSCEEHH---HHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCH
T ss_pred CCccccCCHHH--HHHHHHHHhcCCCCCHH---HHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCH
Confidence 77668999875 56788888765678999 99998876578999999999999999999999999998888876664
Q ss_pred h
Q psy2296 81 A 81 (208)
Q Consensus 81 ~ 81 (208)
.
T Consensus 76 ~ 76 (138)
T 2g9w_A 76 D 76 (138)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=95.80 E-value=0.0088 Score=42.70 Aligned_cols=63 Identities=24% Similarity=0.490 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhh---ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 10 EEKRTGLLELFHE---KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 10 eEKr~~il~~f~~---~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
++=++.||+|+.. +++=|-+| ||.++.|. .-+..||-++..||.+|.+.-=-.||+++| ..|.
T Consensus 2 ee~K~~Ile~l~~k~~~KskfYf~---D~~k~~P~---~k~r~vKK~~~~LV~Eg~leywSSGSTTmy-glkg 67 (78)
T 1ucr_A 2 EEAKQKVVDFLNSKSGSKSKFYFN---DFTDLFPD---MKQREVKKILTALVNDEVLEYWSSGSTTMY-GLKG 67 (78)
T ss_dssp CHHHHHHHHHHSSHHHHSSCEEHH---HHHHHCTT---SCHHHHHHHHHHHHHTTSEEEEEETTEEEE-EETT
T ss_pred hHHHHHHHHHHHhcccccccchHH---HHHHHccc---cCHHHHHHHHHHHHhcCceEEEecCCeEEE-ecCC
Confidence 3557899999998 47788899 99999987 348899999999999999987777766655 3444
No 5
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.60 E-value=0.088 Score=37.97 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHH
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDR 84 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~ 84 (208)
-+.+||.++.. ..-+.. ||-+. .||+..+|--.|+.|.+.|+|...+.|...+ |++.......
T Consensus 22 ~r~~IL~~L~~--~~~~~~---ela~~----l~is~~tv~~~l~~L~~~gli~~~~~gr~~~-y~l~~~~~~~ 84 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSAS---SLATR----LPVSRQAIAKHLNALQACGLVESVKVGREIR-YRALGAELNK 84 (114)
T ss_dssp HHHHHHHHHHH--SCBCHH---HHHHH----SSSCHHHHHHHHHHHHHTTSEEEEEETTEEE-EEECSHHHHH
T ss_pred HHHHHHHHHHc--CCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeeEEecCCEEE-EEechHHHHH
Confidence 35667777732 235666 76553 4999999999999999999999998887544 4555444333
No 6
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=95.17 E-value=0.074 Score=49.73 Aligned_cols=155 Identities=14% Similarity=0.255 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc--------ccceeEeeccchhhH
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI--------GTSTYFWSFPNKASD 83 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi--------GtsN~YWsFps~~~~ 83 (208)
+-.||+.++...+. .+-| .+ ++.+||....|+.+|-.|.++|+|..-++ |.+.|+|.+-....
T Consensus 361 ~a~RI~r~L~~~~~-l~d~------~i-a~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~~- 431 (534)
T 2xub_A 361 RCARIFRLVLQKKH-IEQK------QV-EDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSA- 431 (534)
T ss_dssp HHHHHHHHHHHC----CHH------HH-HHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHHH-
T ss_pred HHHHHHHHHHHcCC-CCHH------HH-HHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHHH-
Confidence 34566666666552 3333 33 33389999999999999999999999988 55678888875533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy2296 84 RVDCKLEKITAEIEDVTKELAQ----NNEALEKSMVGRGDSKNREDFL-QEVGNISKELELINKELEKYKNNDPDTLKLI 158 (208)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~~i~~----l~~~ie~~~~~r~~~~eR~~ll-~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~ 158 (208)
...-++.+.+-+..+..++.- ...-+++. +|.+.+ +.++.=....+++.++-+.+...+-+.+++.
T Consensus 432 -~~~l~~~~~k~l~nl~~Rl~~E~~~~~~lL~k~--------eR~d~~~~~vk~~~~~~~~~~e~~e~lt~~e~~~l~~~ 502 (534)
T 2xub_A 432 -ARMLLHRCYKSIANLIERRQFETKENKRLLEKS--------QRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETL 502 (534)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH--------HHHHHHHHCCC--------CHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------HhhhhHHHHhhccccchhhhHHHHHhcCHHHHHHHHHH
Confidence 222233333333333222221 11111111 111110 0000000111111111111222233456677
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2296 159 ENTAQRAKEAANRWTDNLFSLKSWCK 184 (208)
Q Consensus 159 ~~~~~~~k~aanrwTDNI~~l~~~~~ 184 (208)
+.....+-.+..|-=|-|+++.+|+.
T Consensus 503 ~~~~~~L~~~~~~lD~~i~vl~dy~~ 528 (534)
T 2xub_A 503 KRNVNKLDASEIQVDETIFLLESYIE 528 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 77888888899999999999999975
No 7
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.79 E-value=0.13 Score=37.74 Aligned_cols=74 Identities=14% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchh
Q psy2296 2 SKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKA 81 (208)
Q Consensus 2 skkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~ 81 (208)
.+..|||..| -.+|.++.+.. .-+.+ ||-.......|+.+-||--+|+.|++.|+|...+.|-...|....+..
T Consensus 3 ~~~~~Lt~~q--~~vL~~L~~~~-~~t~~---el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~~~~~~ 76 (126)
T 1sd4_A 3 NKQVEISMAE--WDVMNIIWDKK-SVSAN---EIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKED 76 (126)
T ss_dssp --CCCCCHHH--HHHHHHHHHSS-SEEHH---HHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHH
T ss_pred CCCCCCCHHH--HHHHHHHHhcC-CCCHH---HHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCeEEEEEecCHH
Confidence 4457899876 46788887754 46889 999998876799999999999999999999999999888887766543
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=94.74 E-value=0.017 Score=39.29 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeec
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSF 77 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsF 77 (208)
++.+.+||++|.+...+.+.. ||= .. .||+..+|--.|+.|.++|+|...+-| ||+.
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~---eLA---~~-lglsr~tv~~~l~~L~~~G~I~~~~~G----~y~l 65 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIF---QLV---KK-CQVPKKTLNQVLYRLKKEDRVSSPSPK----YWSI 65 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHH---HHH---HH-HCSCHHHHHHHHHHHHHTTSEEEEETT----EEEE
T ss_pred cHHHHHHHHHHHHcCCCcCHH---HHH---HH-HCcCHHHHHHHHHHHHHCCcEecCCCc----eEee
Confidence 456788999998766678888 743 33 799999999999999999999876654 6654
No 9
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=94.65 E-value=0.12 Score=37.85 Aligned_cols=76 Identities=12% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCCC-CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 1 MSKK-KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 1 Mskk-kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
|.++ .|+|..+ ..+|.++.. ...-+.+ ||-.......|++..||--+|..|++.|+|...+.|-...|.+.-.
T Consensus 1 m~~~~~~lt~~~--~~vL~~l~~-~~~~t~~---ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~ 74 (123)
T 1okr_A 1 MDNKTYEISSAE--WEVMNIIWM-KKYASAN---NIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVE 74 (123)
T ss_dssp ---CCCCCCHHH--HHHHHHHHH-HSSEEHH---HHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSC
T ss_pred CCcccccCCHHH--HHHHHHHHh-CCCcCHH---HHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecC
Confidence 5544 6888866 568888877 4457889 9988877656899999999999999999999998887767766665
Q ss_pred hhh
Q psy2296 80 KAS 82 (208)
Q Consensus 80 ~~~ 82 (208)
.+.
T Consensus 75 ~g~ 77 (123)
T 1okr_A 75 ESD 77 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 10
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=94.59 E-value=0.072 Score=37.78 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEee
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWS 76 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWs 76 (208)
-|.+||.++.+ ...+.. ||-.. -||+..+|--.|+.|.+.|+|..++-|...||.-
T Consensus 24 ~r~~Il~~L~~--~~~~~~---ela~~----l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 24 RRLQILCMLHN--QELSVG---ELCAK----LQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp HHHHHHHHTTT--SCEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEE
T ss_pred HHHHHHHHHhc--CCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 46677777766 456666 66544 3999999999999999999999999998766644
No 11
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=94.56 E-value=0.043 Score=40.38 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeec
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSF 77 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsF 77 (208)
.|||..| ..||.++.+ ...-+.+ ||-.......|+.+-||--+|..|++.|+|..++.|-..+|.+.
T Consensus 31 ~~LT~~e--~~VL~~L~~-~~~~t~~---eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~p~ 97 (99)
T 2k4b_A 31 FNVSNAE--LIVMRVIWS-LGEARVD---EIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRPL 97 (99)
T ss_dssp CCCCCSC--SHHHHHHHH-HSCEEHH---HHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEECC
T ss_pred CCCCHHH--HHHHHHHHh-CCCCCHH---HHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEEEe
Confidence 4555543 467888887 4467889 99988887679999999999999999999999999999998763
No 12
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.52 E-value=0.027 Score=41.01 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc-----ccccceeEeeccchhh
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE-----KIGTSTYFWSFPNKAS 82 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E-----KiGtsN~YWsFps~~~ 82 (208)
+.+-+|+..+....+..+.. ||-. . -||+..+|-+.|+.|.++|+|... .-|...+||++.....
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~---eLa~---~-lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i 87 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDE---EIAN---Q-LNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQI 87 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHH---HHHH---T-TTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHH
Confidence 35677888887666556777 6433 3 799999999999999999999987 5677788898876543
No 13
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=94.36 E-value=1.1 Score=32.89 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc-cccceeEeecc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK-IGTSTYFWSFP 78 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK-iGtsN~YWsFp 78 (208)
-|+|.-+ .++|.++.-...--++. ||-.. .|++..+|-.+|+.|++.|+|...+ -|....|+..+
T Consensus 22 ~gl~~~~--~~il~~L~~~~~~~t~~---ela~~----l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 22 HGLNKSV--GAVYAILYLSDKPLTIS---DIMEE----LKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp TTCCHHH--HHHHHHHHHCSSCEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred cCCChhH--HHHHHHHHHcCCCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 4677654 45666664333457888 77554 5899999999999999999999876 34444455544
No 14
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=93.98 E-value=0.041 Score=41.83 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=59.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccc-cCCccchHHHHHHHhhhcCcccccccccceeEee
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKE-KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWS 76 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~-~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWs 76 (208)
|-+.+|+-+-.-|..||++|.++...++.. ||-..+.+. .+|+..||=-.|+.|++.|+|..-..|.+..+..
T Consensus 1 ~l~~~g~r~T~qR~~Il~~l~~~~~~~sa~---ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 1 MASAAGVRSTRQRAAISTLLETLDDFRSAQ---ELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp -CTTTHHHHHHHHHHHHHHHHHCCSCEEHH---HHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEE
T ss_pred ChhhccCCCCHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 344567777788999999999998999999 998877653 4899999999999999999999888866544433
No 15
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=93.71 E-value=0.18 Score=35.94 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchh
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKA 81 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~ 81 (208)
.-|-+||..+.+. ..+.. ||-.. .||+..+|-..|..|.+.|+|...+.|...| |+.....
T Consensus 23 ~~r~~Il~~L~~~--~~~~~---ela~~----l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~-y~l~~~~ 83 (102)
T 3pqk_A 23 PVRLMLVCTLVEG--EFSVG---ELEQQ----IGIGQPTLSQQLGVLRESGIVETRRNIKQIF-YRLTEAK 83 (102)
T ss_dssp HHHHHHHHHHHTC--CBCHH---HHHHH----HTCCTTHHHHHHHHHHHTTSEEEECSSSCCE-EEECSST
T ss_pred HHHHHHHHHHHhC--CCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEE-EEECcHH
Confidence 3566777777552 25666 65443 4999999999999999999999999998655 4554443
No 16
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.57 E-value=0.085 Score=36.49 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc-ceeEeeccc
Q psy2296 13 RTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT-STYFWSFPN 79 (208)
Q Consensus 13 r~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt-sN~YWsFps 79 (208)
+.+||+++.... ..+.. ||-.. .||+..+|...|+.|+++|+|.....|. ...||.+..
T Consensus 2 r~~Il~~L~~~~-~~s~~---eLa~~----lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~ 61 (81)
T 2htj_A 2 KNEILEFLNRHN-GGKTA---EIAEA----LAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKG 61 (81)
T ss_dssp HHHHHHHHHHSC-CCCHH---HHHHH----HTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESS
T ss_pred HHHHHHHHHHcC-CCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEECh
Confidence 467888887654 36777 76553 5999999999999999999998553322 335666554
No 17
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=93.30 E-value=0.63 Score=33.32 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKY 147 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 147 (208)
-+.++.++.|...|+.++.++..++..+..-..-..+...=..+..++..++.++..+......+
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999988886543322344445667777777777777776665444
No 18
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.17 E-value=0.38 Score=33.65 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc-----cceeEeeccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG-----TSTYFWSFPN 79 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG-----tsN~YWsFps 79 (208)
.|+|..+ ...|+.++ ......+.. ||-.. .||+..+|-.+|+.|++.|+|.....+ --.+++++..
T Consensus 17 ~~l~~~~-~~~l~~l~-~~~~~~t~~---ela~~----l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~ 87 (109)
T 2d1h_A 17 YKITDTD-VAVLLKMV-EIEKPITSE---ELADI----FKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISS 87 (109)
T ss_dssp HTCCHHH-HHHHHHHH-HHCSCEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECT
T ss_pred hcCCHHH-HHHHHHHH-HcCCCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCH
Confidence 4777653 33444444 434557888 77653 599999999999999999999987653 3345566655
Q ss_pred hhh
Q psy2296 80 KAS 82 (208)
Q Consensus 80 ~~~ 82 (208)
...
T Consensus 88 ~~~ 90 (109)
T 2d1h_A 88 NIL 90 (109)
T ss_dssp THH
T ss_pred HHH
Confidence 433
No 19
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=93.01 E-value=0.12 Score=39.65 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhccc-ccCCccchHHHHHHHhhhcCcccccccccceeEe
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPK-EKGIISQSVKEILQSLVDDGLVESEKIGTSTYFW 75 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK-~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YW 75 (208)
+.|+-+=--|..||++|.++....+.. ||-..+.+ ..+|+..||=-.|+.|++.|+|+.-..|.+..++
T Consensus 7 ~~g~r~T~qR~~Il~~L~~~~~h~sa~---eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 7 PVKGRATRQRAAVSAALQEVEEFRSAQ---ELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp ---CHHHHHHHHHHHHHTTCSSCEEHH---HHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred CCCCccCHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 467777778999999999998999999 99766644 3589999999999999999999887775543333
No 20
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=92.92 E-value=0.1 Score=40.30 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccc-cCCccchHHHHHHHhhhcCcccccccccceeEee
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKE-KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWS 76 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~-~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWs 76 (208)
+|+-+-.-|..||++|.++...++.. ||-..+.+. .+|+..||=-.|..|++.|+|..-..|.+..++.
T Consensus 16 ~g~r~T~qR~~Il~~L~~~~~~~sa~---ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 16 TGVRITPQRHAILEYLVNSMAHPTAD---DIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHCSSCCCHH---HHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 56666678999999999988899999 998887653 4899999999999999999999888876544433
No 21
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=92.80 E-value=0.29 Score=34.06 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
-+.+||.++.. ...-+.. ||-.. .||+..+|--.|+.|++.|+|...+-|...+|.--|.
T Consensus 25 ~~~~il~~l~~-~~~~s~~---ela~~----l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~ 84 (99)
T 3cuo_A 25 KRLLILCMLSG-SPGTSAG---ELTRI----TGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNE 84 (99)
T ss_dssp HHHHHHHHHTT-CCSEEHH---HHHHH----HCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCH
T ss_pred HHHHHHHHHHh-CCCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChH
Confidence 45677777765 3345777 76554 4899999999999999999999999888766655443
No 22
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=91.73 E-value=0.38 Score=34.98 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=42.5
Q ss_pred HHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchh
Q psy2296 13 RTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKA 81 (208)
Q Consensus 13 r~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~ 81 (208)
|.+||.++.. ...+.. ||-.. .||+..+|--.|..|.+.|+|..++-|...+| +.....
T Consensus 27 r~~IL~~L~~--~~~s~~---eLa~~----lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y-~l~~~~ 85 (108)
T 2kko_A 27 RLQILDLLAQ--GERAVE---AIATA----TGMNLTTASANLQALKSGGLVEARREGTRQYY-RIAGED 85 (108)
T ss_dssp THHHHHHHTT--CCEEHH---HHHHH----HTCCHHHHHHHHHHHHHHTSEEEEEETTEEEE-EESCHH
T ss_pred HHHHHHHHHc--CCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE-EEChHH
Confidence 4456666653 234666 65432 59999999999999999999999998886655 444443
No 23
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=91.33 E-value=2 Score=31.03 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCHHHHhhh
Q psy2296 122 NREDFLQEVGNISKELELINKELEKYKN----NDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCKNKFGLEETALNKH 197 (208)
Q Consensus 122 eR~~ll~~l~~L~~~~~~l~~el~~~~~----~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~~~k~~~~~~~i~~~ 197 (208)
+++.+-.++..|+.+..+|..++..+.. .||+.+- ++-+..++ ..|-.-|---.|..-+...-|+...++..+
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~--~~hI~~Lh-~YNeiKD~gq~L~g~iA~~rgv~~~~v~~e 78 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTV--QKHIDLLH-TYNEIRDIALGMIGKVAEHEKCTSVELFDR 78 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSCGGGGHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH--HHHHHHHH-HHhHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3466777788888888888888877653 4665532 22222222 234444555567788888899999999999
Q ss_pred cCCCCC
Q psy2296 198 FSIPEE 203 (208)
Q Consensus 198 f~Ip~d 203 (208)
||+..+
T Consensus 79 ~g~~~~ 84 (85)
T 3viq_B 79 FGVNGS 84 (85)
T ss_dssp HTCCTT
T ss_pred hCCCCC
Confidence 999753
No 24
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=91.27 E-value=0.16 Score=38.76 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHhhhcc-chhhhcchHHHHhhcccc-cCCccchHHHHHHHhhhcCcccccccccce
Q psy2296 5 KGLSVEEKRTGLLELFHEKE-EFFQLKLIIELEKLAPKE-KGIISQSVKEILQSLVDDGLVESEKIGTST 72 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~-~~f~lK~~~ElEK~~pK~-~GI~~~~VKdvlq~LVDDglV~~EKiGtsN 72 (208)
+|+-+-.-|..||++|.++. ...+.. ||-..+.+. .+|+..||=-.|..|++.|+|+.-..|.+.
T Consensus 12 ~g~r~T~qR~~Il~~L~~~~~~~~sa~---ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~ 78 (136)
T 1mzb_A 12 AGLKVTLPRVKILQMLDSAEQRHMSAE---DVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGH 78 (136)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHH---HHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSS
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCHH---HHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCc
Confidence 56666667999999999988 899999 998887653 489999999999999999999988875543
No 25
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.15 E-value=0.85 Score=31.67 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
|+|.. +.+||.++.... ..+.. ||-+. .||+..+|-.+|+.|++.|+|.....
T Consensus 17 ~l~~~--~~~il~~l~~~~-~~s~~---ela~~----l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 17 SFKPS--DVRIYSLLLERG-GMRVS---EIARE----LDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CCCHH--HHHHHHHHHHHC-CBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHH--HHHHHHHHHHcC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 55543 567888886643 36777 77554 49999999999999999999998776
No 26
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=91.09 E-value=0.2 Score=38.95 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHhhhcc-chhhhcchHHHHhhcccc-cCCccchHHHHHHHhhhcCcccccccccceeEeec
Q psy2296 5 KGLSVEEKRTGLLELFHEKE-EFFQLKLIIELEKLAPKE-KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSF 77 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~-~~f~lK~~~ElEK~~pK~-~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsF 77 (208)
+|+-+-.-|..||++|.++. ..++.. ||-..+.+. .+|+..||=-.|+.|++.|+|..-..|.+..++.+
T Consensus 11 ~g~r~T~qR~~Il~~L~~~~~~h~sa~---ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 11 AGLKVTLPRLKILEVLQQPECQHISAE---ELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp TTCCCCHHHHHHHHHHTSGGGSSEEHH---HHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 56666667999999999988 899999 998887653 48999999999999999999998887655444443
No 27
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=90.85 E-value=0.49 Score=34.78 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHH
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDR 84 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~ 84 (208)
.-|-+||.++.. ...+.. ||-.. -||+..+|--.|..|.+.|+|..++.|...|| +........
T Consensus 18 ~~R~~Il~~L~~--~~~~~~---eLa~~----l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y-~l~~~~~~~ 81 (118)
T 3f6o_A 18 PTRRAVLGRLSR--GPATVS---ELAKP----FDMALPSFMKHIHFLEDSGWIRTHKQGRVRTC-AIEKEPFTA 81 (118)
T ss_dssp HHHHHHHHHHHT--CCEEHH---HHHTT----CCSCHHHHHHHHHHHHHTTSEEEEEETTEEEE-EECSHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHH---HHHHH----hCcCHHHHHHHHHHHHHCCCeEEEecCCEEEE-EECHHHHHH
Confidence 356778888874 334777 76543 59999999999999999999999999976655 454444433
No 28
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=90.83 E-value=0.25 Score=38.38 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccc-cCCccchHHHHHHHhhhcCcccccccccceeEeec
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKE-KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSF 77 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~-~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsF 77 (208)
+|+-+-.-|..||++|.++...++.. ||-..+.+. .+|+..||=-.|+.|++.|+|+.-..|.+..++.+
T Consensus 21 ~g~r~T~qR~~IL~~l~~~~~~~sa~---ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 21 NGLKNSKQREEVVSVLYRSGTHLSPE---EITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CC--CHHHHHHHHHHHHHCSSCBCHH---HHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 56666778999999999988899999 997777553 48999999999999999999998777665444443
No 29
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=90.47 E-value=0.089 Score=37.41 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccc-hHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 7 LSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQ-SVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~-~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
++..+=+.+||.++..... -+.+ ||= +..||+.+ .|--.|+.|-.||+|...-.|- -+|+....+.
T Consensus 7 ~~~~~~~~~IL~~Lk~~g~-~ta~---eiA----~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gR--P~w~LT~~g~ 73 (79)
T 1xmk_A 7 LDMAEIKEKICDYLFNVSD-SSAL---NLA----KNIGLTKARDINAVLIDMERQGDVYRQGTTP--PIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHTCC-EEHH---HHH----HHHCGGGHHHHHHHHHHHHHTTSEEEECSSS--CEEEECHHHH
T ss_pred ccchhHHHHHHHHHHHcCC-cCHH---HHH----HHcCCCcHHHHHHHHHHHHHCCCEEecCCCC--CCeEeCHhHH
Confidence 4566778999988887654 4566 543 34799999 9999999999999999665554 4999877654
No 30
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=90.18 E-value=0.33 Score=34.26 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|.+||.++ . ...+.. ||-.. .||+..+|--.|+.|.+.|+|...+ |
T Consensus 32 ~r~~Il~~L-~--~~~~~~---eLa~~----l~is~~tv~~~L~~L~~~Glv~~~~-g 78 (96)
T 1y0u_A 32 VRRKILRML-D--KGRSEE---EIMQT----LSLSKKQLDYHLKVLEAGFCIERVG-E 78 (96)
T ss_dssp HHHHHHHHH-H--TTCCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEET-T
T ss_pred HHHHHHHHH-c--CCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEEC-C
Confidence 456777777 2 346667 75443 4999999999999999999999988 7
No 31
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=89.67 E-value=0.85 Score=32.76 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
-|-+||.++.. .-.+.. ||-.. .||+..+|--.|+.|.+.|+|...+.|... ||+....
T Consensus 27 ~r~~IL~~L~~--~~~~~~---ela~~----l~is~stvs~~L~~L~~~Glv~~~~~gr~~-~y~l~~~ 85 (106)
T 1r1u_A 27 NRIRIMELLSV--SEASVG---HISHQ----LNLSQSNVSHQLKLLKSVHLVKAKRQGQSM-IYSLDDI 85 (106)
T ss_dssp HHHHHHHHHHH--CCBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEETTEE-EEEESSH
T ss_pred HHHHHHHHHHh--CCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeEEEEeCCEE-EEEEChH
Confidence 45566666652 224555 54332 599999999999999999999999998654 4454444
No 32
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=89.65 E-value=1.9 Score=32.02 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=50.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC----------------hhHHHHHHHHHHHHHHHHHHH
Q psy2296 78 PNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDS----------------KNREDFLQEVGNISKELELIN 141 (208)
Q Consensus 78 ps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~----------------~eR~~ll~~l~~L~~~~~~l~ 141 (208)
.+.....++.+++.|..+...+..++..|+.+++..- .|++. .-+...-+.++.|+.+++.|+
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~-l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA-LQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLR 88 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888888888887632 22221 234555677888888888888
Q ss_pred HHHHHHhc
Q psy2296 142 KELEKYKN 149 (208)
Q Consensus 142 ~el~~~~~ 149 (208)
..+..+.+
T Consensus 89 ~~v~~lEe 96 (100)
T 1go4_E 89 GLLRAMER 96 (100)
T ss_dssp HHHTTCC-
T ss_pred HHHHHHhc
Confidence 77776665
No 33
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=89.34 E-value=1.8 Score=29.78 Aligned_cols=61 Identities=13% Similarity=0.221 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc---cccceeEeeccchh
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK---IGTSTYFWSFPNKA 81 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK---iGtsN~YWsFps~~ 81 (208)
-+-+||..+.... .-+.. ||-+. .||+..+|--.|+.|.+.|+|...+ -|.. .|++.....
T Consensus 17 ~~~~iL~~L~~~~-~~~~~---ela~~----l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~-~~~~lt~~g 80 (100)
T 1ub9_A 17 VRLGIMIFLLPRR-KAPFS---QIQKV----LDLTPGNLDSHIRVLERNGLVKTYKVIADRPR-TVVEITDFG 80 (100)
T ss_dssp HHHHHHHHHHHHS-EEEHH---HHHHH----TTCCHHHHHHHHHHHHHTTSEEEEEECSSSCE-EEEEECHHH
T ss_pred HHHHHHHHHHhcC-CcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEEecCCCcce-EEEEECHHH
Confidence 4667888776433 35666 76554 4999999999999999999999776 4443 344444443
No 34
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=89.01 E-value=0.43 Score=35.23 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeec
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSF 77 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsF 77 (208)
.-|-+||.++... ..+.. ||-.. -||+..+|--.|..|.+.|+|...+-|...||.--
T Consensus 21 ~~r~~IL~~L~~~--~~~~~---eLa~~----lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~ 78 (118)
T 2jsc_A 21 PTRCRILVALLDG--VCYPG---QLAAH----LGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALA 78 (118)
T ss_dssp HHHHHHHHHHHTT--CCSTT---THHHH----HSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEES
T ss_pred HHHHHHHHHHHcC--CCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence 4567888888742 35777 77543 59999999999999999999999998876555443
No 35
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=88.89 E-value=5.4 Score=29.18 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc--cceeEeeccchh
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG--TSTYFWSFPNKA 81 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG--tsN~YWsFps~~ 81 (208)
+-|||..+ -.+|.+++.... -+.+ ||-.. .|+++.+|--+|..|++.|+|...... --.+++++...+
T Consensus 26 ~~~lt~~q--~~iL~~l~~~~~-~t~~---eLa~~----l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G 95 (145)
T 3g3z_A 26 QQDLNYNL--FAVLYTLATEGS-RTQK---HIGEK----WSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETG 95 (145)
T ss_dssp TTTCCHHH--HHHHHHHHHHCS-BCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHH
T ss_pred HcCCCHHH--HHHHHHHHHCCC-CCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhH
Confidence 35788776 677777766554 6777 77543 599999999999999999999975542 233455555544
Q ss_pred h
Q psy2296 82 S 82 (208)
Q Consensus 82 ~ 82 (208)
.
T Consensus 96 ~ 96 (145)
T 3g3z_A 96 K 96 (145)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=88.37 E-value=6.6 Score=29.90 Aligned_cols=56 Identities=23% Similarity=0.189 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
+-|||..+ -.+|.++.....--+++ ||-.. .||...+|--+|..|++.|+|.....
T Consensus 48 ~~glt~~q--~~vL~~L~~~~~~~t~~---eLa~~----l~i~~~tvs~~l~~Le~~GlV~r~~~ 103 (166)
T 3deu_A 48 PLELTQTH--WVTLHNIHQLPPDQSQI---QLAKA----IGIEQPSLVRTLDQLEDKGLISRQTC 103 (166)
T ss_dssp TTTCCHHH--HHHHHHHHHSCSSEEHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred hcCCCHHH--HHHHHHHHHcCCCCCHH---HHHHH----HCCCHhhHHHHHHHHHHCCCEEeeCC
Confidence 46888876 67888887755557888 87543 59999999999999999999998764
No 37
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.36 E-value=0.62 Score=33.34 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchh
Q psy2296 7 LSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKA 81 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~ 81 (208)
+....=+.+||.++.... .+.+ ||=+. -||+.++|--.|..|.++|+|... +...--|..+...
T Consensus 13 ~~~~~~~~~IL~lL~~~g--~sa~---eLAk~----LgiSk~aVr~~L~~Le~eG~I~~~--~~~PP~W~~~~~~ 76 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGIEG--ATAA---QLTRQ----LNMEKREVNKALYDLQRSAMVYSS--DDIPPRWFMTTEA 76 (82)
T ss_dssp CCSHHHHHHHHHHHSSST--EEHH---HHHHH----SSSCHHHHHHHHHHHHHHTSSEEC--SSSSCEEESCC--
T ss_pred cchHHHHHHHHHHHHHcC--CCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEeC--CCCCCcceeccCc
Confidence 344566788999999655 7888 76443 599999999999999999999886 6666777766653
No 38
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=88.36 E-value=5.9 Score=29.93 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccc-eeEeeccchhhH
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTS-TYFWSFPNKASD 83 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGts-N~YWsFps~~~~ 83 (208)
-|||..+ -.+|.++......-+.+ ||-. ..||.+.+|--+|..|+..|+|.......- -.+.-....+..
T Consensus 27 ~gLt~~q--~~vL~~L~~~~~~~~~~---eLa~----~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~ 97 (151)
T 4aik_A 27 LELTQTH--WVTLYNINRLPPEQSQI---QLAK----AIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSS 97 (151)
T ss_dssp GCCCHHH--HHHHHHHHHSCTTSCHH---HHHH----HHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGH
T ss_pred cCCCHHH--HHHHHHHHHcCCCCcHH---HHHH----HHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHH
Confidence 5788764 56777777666666677 7643 269999999999999999999987766442 233334444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 84 RVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELE 145 (208)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~ 145 (208)
.....+... -..+.......=+.+++..+..-|..+...+.+++.+++
T Consensus 98 ~~~~~~~~~--------------~~~~~~~~~~~l~~ee~~~l~~~L~kl~~nl~~l~~k~E 145 (151)
T 4aik_A 98 PIIEQVDGV--------------ISSTRKEILGGISSDEIAVLSGLIDKLEKNIIQLQTKLE 145 (151)
T ss_dssp HHHHHHHHH--------------HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHH--------------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 322222111 111111112222446777777777777766666665554
No 39
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=88.28 E-value=5.9 Score=32.17 Aligned_cols=48 Identities=29% Similarity=0.385 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-+-+||.+++. ...+.. ||-+.. ||++.+|--.|..|.+.|+|...+.
T Consensus 16 ~rl~IL~~L~~--~~~s~~---eLa~~l----~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 16 TRRRILFLLTK--RPYFVS---ELSREL----GVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHHHHHHH--SCEEHH---HHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--CCCCHH---HHHHHH----CcCHHHHHHHHHHHHHCCceEEEee
Confidence 45677777753 234555 665443 8999999999999999999999887
No 40
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=88.21 E-value=1.1 Score=33.09 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
.-|-+||.++.... -.+.. ||-.. -||+..+|--.|..|.+.|+|...+-|...+|.--+.
T Consensus 42 ~~rl~IL~~L~~~~-~~s~~---eLa~~----l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 102 (122)
T 1u2w_A 42 ENRAKITYALCQDE-ELCVC---DIANI----LGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDE 102 (122)
T ss_dssp HHHHHHHHHHHHSS-CEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred HHHHHHHHHHHHCC-CcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence 34567777776432 35667 66543 4999999999999999999999999998666555443
No 41
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=88.08 E-value=1.2 Score=34.61 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHH
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRV 85 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~ 85 (208)
.-|-+||.++.. .-.+.. ||-.. .||+..+|--.|+.|.+.|+|...+-|...| |++.......+
T Consensus 58 p~R~~IL~~L~~--~~~t~~---eLa~~----lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~-y~lt~~~~~~l 122 (151)
T 3f6v_A 58 PTRRRLVQLLTS--GEQTVN---NLAAH----FPASRSAISQHLRVLTEAGLVTPRKDGRFRY-YRLDPQGLAQL 122 (151)
T ss_dssp HHHHHHHHHGGG--CCEEHH---HHHTT----SSSCHHHHHHHHHHHHHTTSEEEEEETTEEE-EEECHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE-EEEChHHHHHH
Confidence 457888988873 335667 66543 5999999999999999999999999999855 45555444433
No 42
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=88.01 E-value=2.4 Score=29.52 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhH
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASD 83 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~ 83 (208)
.-|||..+ -.+|.++... .-.+.. ||-+......||+..+|--+|+.|++.|+|.....+ -..+.+. .....
T Consensus 3 ~~~lt~~q--~~iL~~l~~~-~~~~~~---el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~-r~~~~~L-T~~G~ 74 (99)
T 1tbx_A 3 STPFFYPE--AIVLAYLYDN-EGIATY---DLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER-GEKRLYL-TEKGK 74 (99)
T ss_dssp CCSSBCHH--HHHHHHHTTC-TTCBHH---HHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEE-CHHHH
T ss_pred CCCCCHHH--HHHHHHHHHc-CCcCHH---HHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC-CceEEEE-CHHHH
Confidence 45777665 4577777764 446778 885444444899999999999999999999988777 3444444 44443
Q ss_pred H
Q psy2296 84 R 84 (208)
Q Consensus 84 ~ 84 (208)
.
T Consensus 75 ~ 75 (99)
T 1tbx_A 75 L 75 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=87.27 E-value=6.9 Score=32.62 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc-ccccc-----ceeEe
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES-EKIGT-----STYFW 75 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~-EKiGt-----sN~YW 75 (208)
.-|.+||.++.. ...+.. ||-. ..||+..+|--.|..|.+.|+|.. .+.|. ..||.
T Consensus 12 ~~R~~IL~~L~~--g~~s~~---ELa~----~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~ 73 (232)
T 2qlz_A 12 KVRRDLLSHLTC--MECYFS---LLSS----KVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYK 73 (232)
T ss_dssp HHHHHHHHHHTT--TTTCSS---SSCT----TCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEE
T ss_pred HHHHHHHHHHHh--CCCCHH---HHHH----HHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEE
Confidence 357788888875 345666 5433 269999999999999999999999 78887 66665
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.09 E-value=3.3 Score=28.90 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 126 FLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 126 ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
+-.++.+...++..|+.+|.+|+.
T Consensus 45 LEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345567777788888888888865
No 45
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=87.07 E-value=4.1 Score=29.76 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc--ccceeEeeccchh
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI--GTSTYFWSFPNKA 81 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi--GtsN~YWsFps~~ 81 (208)
.-|+|+.+ -.||.++.... -+.. ||-.. .|++..+|-.+|..|++.|+|..... .--.++++....+
T Consensus 33 ~~~lt~~~--~~iL~~l~~~~--~t~~---eLa~~----l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g 101 (146)
T 3tgn_A 33 EVALTNTQ--EHILMLLSEES--LTNS---ELARR----LNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLA 101 (146)
T ss_dssp SSCCCHHH--HHHHHHHTTCC--CCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGG
T ss_pred ccCCCHHH--HHHHHHHHhCC--CCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhH
Confidence 35788775 56888888776 8888 77655 49999999999999999999988664 2333455554444
Q ss_pred h
Q psy2296 82 S 82 (208)
Q Consensus 82 ~ 82 (208)
.
T Consensus 102 ~ 102 (146)
T 3tgn_A 102 R 102 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 46
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=87.04 E-value=0.32 Score=38.82 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhc-----CCCHHHHhhhcCCCCCC
Q psy2296 164 RAKEAANRWTDNLFSLKSWCKNKF-----GLEETALNKHFSIPEEM 204 (208)
Q Consensus 164 ~~k~aanrwTDNI~~l~~~~~~k~-----~~~~~~i~~~f~Ip~d~ 204 (208)
.+..|||-. ||-.|.+++|+.. |.++++||+.||||.||
T Consensus 108 eLi~AAnyL--dIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~ 151 (169)
T 3v7d_A 108 EIILAANYL--NIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDF 151 (169)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCC
T ss_pred HHHHHHHHh--CcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 456677765 7888899988875 99999999999999997
No 47
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=86.93 E-value=0.54 Score=36.23 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhccc-ccCCccchHHHHHHHhhhcCcccccccccceeEee
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPK-EKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWS 76 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK-~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWs 76 (208)
.+|+-+=.-|..||++|.++. ..+-- ||-..+.+ ..+|+..||=-.|..|++.|+|+.=-.|.+..++.
T Consensus 12 ~~g~r~T~qR~~Il~~l~~~~-h~ta~---ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~ 81 (145)
T 3eyy_A 12 QRGYRLTPQRQLVLEAVDTLE-HATPD---DILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYH 81 (145)
T ss_dssp TTTCCCCHHHHHHHHHHHHHS-SBCHH---HHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred HcCCCcCHHHHHHHHHHHhcC-CCCHH---HHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 356666667999999999887 88888 87555443 34899999999999999999998766665544333
No 48
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=86.46 E-value=0.35 Score=40.40 Aligned_cols=62 Identities=24% Similarity=0.215 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
.+.=..+|+++... ..+-|.- +|-.. -|++.--.+++|..++.+|+++.|--+.. .|| |||-
T Consensus 152 ~~~~~~~il~~~~~-~g~vt~~---~la~~----l~ws~~~a~e~L~~~e~~G~l~~D~~~eg-~~y-~pn~ 213 (218)
T 3cuq_B 152 EEEMVASALETVSE-KGSLTSE---EFAKL----VGMSVLLAKERLLLAEKMGHLCRDDSVEG-LRF-YPNL 213 (218)
T ss_dssp GGGGHHHHHHHHHH-TSCBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEESSSC-EEE-EECG
T ss_pred hHHHHHHHHHHHHH-CCCcCHH---HHHHH----hCCCHHHHHHHHHHHHHcCCEEEECCCCc-eEE-ehhh
Confidence 33345677777764 2344444 44332 49999999999999999999999986655 666 7763
No 49
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=86.39 E-value=1.1 Score=37.96 Aligned_cols=66 Identities=17% Similarity=0.380 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc-cccceeEeeccch
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK-IGTSTYFWSFPNK 80 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK-iGtsN~YWsFps~ 80 (208)
+..+|.+..+ +|++.. ...|.|.- +|... -|+..--.+++|..|+.+|++..|- .+.-..|| |||-
T Consensus 149 p~el~~D~~~--vLela~-~~g~vt~~---~L~~~----l~W~~~Ra~~~L~~l~~~GllwvD~q~~ge~~Yw-~P~l 215 (234)
T 3cuq_A 149 PAELNMDHTV--VLQLAE-KNGYVTVS---EIKAS----LKWETERARQVLEHLLKEGLAWLDLQAPGEAHYW-LPAL 215 (234)
T ss_dssp CCCCCHHHHH--HHHHHT-TTSEECHH---HHHHH----HTCCHHHHHHHHHHHHHHTSCEEESSSSSSCEEE-CTTS
T ss_pred CCccchHHHH--HHHHHH-hcCcCcHH---HHHHH----hCCCHHHHHHHHHHHHhCCCEEEeCCCCCcceee-cchh
Confidence 4557777665 677665 56778877 77632 5999999999999999999999995 33235699 8874
No 50
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=85.98 E-value=1.1 Score=34.97 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=32.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhh-----cCCCHHHHhhhcCCCCCCc
Q psy2296 164 RAKEAANRWTDNLFSLKSWCKNK-----FGLEETALNKHFSIPEEMD 205 (208)
Q Consensus 164 ~~k~aanrwTDNI~~l~~~~~~k-----~~~~~~~i~~~f~Ip~d~d 205 (208)
.+..|||.. ||-.|.++|++. -|.++++||+.||||.||-
T Consensus 101 eLl~AAnyL--~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t 145 (159)
T 2ast_A 101 ELILAANYL--DIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFT 145 (159)
T ss_dssp HHHHHHHHH--TCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSC
T ss_pred HHHHHHHHH--hHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 456777766 577888888775 3899999999999999973
No 51
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=85.97 E-value=0.42 Score=36.84 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhc-----CCCHHHHhhhcCCCCCC
Q psy2296 149 NNDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCKNKF-----GLEETALNKHFSIPEEM 204 (208)
Q Consensus 149 ~~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~~~k~-----~~~~~~i~~~f~Ip~d~ 204 (208)
+.|++.+- .+..|||-. ||-.|.++|++.. |.++++||+.||||.||
T Consensus 88 ~vd~~~l~-------eLi~AAnyL--~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~ 139 (141)
T 1fs1_B 88 KVDQGTLF-------ELILAANYL--DIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139 (141)
T ss_dssp CSCHHHHH-------HHHHHHHHH--TCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-----
T ss_pred hCCHHHHH-------HHHHHHHHH--hhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 45666665 446677766 5888888888773 88999999999999998
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.50 E-value=7.2 Score=30.19 Aligned_cols=8 Identities=38% Similarity=0.492 Sum_probs=3.4
Q ss_pred HHHHHhhh
Q psy2296 52 EILQSLVD 59 (208)
Q Consensus 52 dvlq~LVD 59 (208)
+.|+.+.+
T Consensus 28 e~L~~vA~ 35 (138)
T 3hnw_A 28 EYLQRVAS 35 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 53
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=85.46 E-value=8.2 Score=27.68 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
.-|+|..+ -.+|.++... .--+.. ||-+. .|++..+|-.+|+.|++.|+|.....+
T Consensus 24 ~~~l~~~~--~~iL~~l~~~-~~~~~~---ela~~----l~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 24 HLNLTDAQ--VACLLRIHRE-PGIKQD---ELATF----FHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp GGTCCHHH--HHHHHHHHHS-TTCBHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hcCCCHHH--HHHHHHHHHc-CCCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 35777664 5677777765 445777 77654 489999999999999999999987654
No 54
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=85.31 E-value=1.4 Score=31.04 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=46.1
Q ss_pred CCHH-HHHHHHHHHhhhcc--chhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeecc
Q psy2296 7 LSVE-EKRTGLLELFHEKE--EFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFP 78 (208)
Q Consensus 7 lS~e-EKr~~il~~f~~~~--~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFp 78 (208)
||.. +...+||+++.+.. +..+.+ ||-+. -||+.-+|...|..|.++|+|... |...=||...
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~---eLA~~----Lgvsr~tV~~~L~~Le~~G~I~~~--g~~~~~W~i~ 70 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAH---DLSGK----LGTPKKEINRVLYSLAKKGKLQKE--AGTPPLWKIA 70 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEE--SSSSCEEEEC
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEec--CCCCCeeEEe
Confidence 4544 45778999999766 478888 76543 588899999999999999999764 4444455443
No 55
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=85.30 E-value=9 Score=28.01 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|+|..+ -.+|.++.... --+.. ||-+. .||+..+|-.+|+.|++.|+|.....
T Consensus 36 ~~lt~~~--~~iL~~l~~~~-~~t~~---ela~~----l~~~~~~vs~~l~~Le~~Glv~r~~~ 89 (152)
T 3bj6_A 36 EGVTVGQ--RAILEGLSLTP-GATAP---QLGAA----LQMKRQYISRILQEVQRAGLIERRTN 89 (152)
T ss_dssp TTCCHHH--HHHHHHHHHST-TEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred cCCCHHH--HHHHHHHHhCC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCeeecCC
Confidence 4777654 56777776654 45777 76554 59999999999999999999998754
No 56
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=84.42 E-value=0.52 Score=37.16 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhccc---ccCCccchHHHHHHHhhhcCcccccccccceeEee
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPK---EKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWS 76 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK---~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWs 76 (208)
+|+-+=--|..||++|.++...++-- ||-..+.+ ..+|+..||=-.|..|++.|+|+.=-.|.++.++.
T Consensus 27 ~g~r~T~qR~~IL~~L~~~~~h~sA~---eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~ 98 (162)
T 4ets_A 27 GGLKYTKQREVLLKTLYHSDTHYTPE---SLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYE 98 (162)
T ss_dssp HTCCCCHHHHHHHHHHHSCCSCBCHH---HHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHH---HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 34444557899999999999999999 98766554 35799999999999999999998776676665443
No 57
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=84.26 E-value=2.2 Score=31.63 Aligned_cols=58 Identities=26% Similarity=0.321 Sum_probs=41.3
Q ss_pred HHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 13 RTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 13 r~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
|-+||..+.+ .-.+.. ||-.. -||+..+|--.|+.|.+.|+|..++-|...||..-+.
T Consensus 48 rl~IL~~L~~--~~~s~~---ela~~----lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~ 105 (122)
T 1r1t_A 48 RLRLLSLLAR--SELCVG---DLAQA----IGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHTT--CCBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred HHHHHHHHHc--CCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 3455555543 223444 44332 5999999999999999999999999998776655443
No 58
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=84.18 E-value=0.63 Score=39.42 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc-cccceeEeeccch
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK-IGTSTYFWSFPNK 80 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK-iGtsN~YWsFps~ 80 (208)
..+|.+. .++|++.. ...|.|.- +|... -|...--.+++|..|+.+|++..|- .+.-..|| |||-
T Consensus 163 ~el~~D~--~~vLe~a~-~~g~vt~~---~L~~~----lgW~~~Ra~~~L~~l~~~G~lwvD~q~~~e~~Yw-~P~l 228 (233)
T 1u5t_A 163 NELTSDQ--TKILEICS-ILGYSSIS---LLKAN----LGWEAVRSKSALDEMVANGLLWIDYQGGAEALYW-DPSW 228 (233)
T ss_dssp SCCCTTH--HHHHHTTT-TTSCCBHH---HHHHH----HCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEE-CGGG
T ss_pred CccchHH--HHHHHHHH-hcCcCcHH---HHHHH----hCCCHHHHHHHHHHHHHCCCEEEeCCCCCcccee-chhh
Confidence 3455553 45566554 46777777 77632 5899999999999999999999995 42246799 8874
No 59
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=83.67 E-value=3.9 Score=30.23 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHhhhccch-hhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEF-FQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~-f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
|||.- ..+||..+.+.... .+.. ||=+. .|++.-||--.|+.|++.|+|.....
T Consensus 23 gLt~~--e~~il~~L~~~~~~~~t~~---eLa~~----l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 23 NLTKA--DLNVMKSFLNEPDRWIDTD---ALSKS----LKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp TCCHH--HHHHHHHHHHSTTCCEEHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHH--HHHHHHHHHHCCCCCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 67754 56789999887776 7888 87333 58999999999999999999988654
No 60
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=83.06 E-value=0.94 Score=40.26 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=41.9
Q ss_pred HHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 14 TGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 14 ~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
.+|++.+... .+++.. ++.+. .||+.+|+.-.|..|++.|+|...+.|-+ -||.++.
T Consensus 300 ~~ll~~l~~~-p~~t~~---~~~~~----~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~-~~y~~~~ 356 (373)
T 2qc0_A 300 HELVQVIFEQ-PYCRIQ---NLVES----GLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHPK 356 (373)
T ss_dssp HHHHHHHHHC-SEEEHH---HHHHT----SSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECHH
T ss_pred HHHHHHHHhC-CcccHH---HHHHH----hCCCHHHHHHHHHHHHHCCcEEEecCCCc-eEEehHH
Confidence 3466666643 466777 76654 59999999999999999999998888865 6777654
No 61
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=83.06 E-value=11 Score=27.18 Aligned_cols=68 Identities=15% Similarity=0.330 Sum_probs=45.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Q psy2296 79 NKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELEL-INKELEKYKN 149 (208)
Q Consensus 79 s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~-l~~el~~~~~ 149 (208)
+.....+...+..++..++++..-+.+..-++..+. .++..|..+..++.+.+.++.. ++.++.++.+
T Consensus 26 ~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~---~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 26 SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI---GDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333445666667777777766666666555554442 2456688888888888888888 8888887754
No 62
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=82.85 E-value=11 Score=27.17 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|+|..+ -.+|.++.... .-+.. ||-.. .|++..+|-.+|+.|++.|+|.....+
T Consensus 29 ~~l~~~~--~~iL~~l~~~~-~~~~~---~la~~----l~~s~~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 29 FGITPAQ--FDILQKIYFEG-PKRPG---ELSVL----LGVAKSTVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp HTCCHHH--HHHHHHHHHHC-CBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCCHHH--HHHHHHHHHcC-CCCHH---HHHHH----HCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 3677654 66777777633 45677 66543 599999999999999999999987653
No 63
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=82.36 E-value=3.5 Score=29.35 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeecc
Q psy2296 7 LSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFP 78 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFp 78 (208)
-.+++-.++||++.+..+.==+-+ +|++..| +|.....-.+|..|+..|.|..-|-| +.+||.+.
T Consensus 10 ~~~~~ie~~IL~l~~~~P~GItd~---~L~~~~p---~~~~~~r~~aIN~LL~~gkiel~K~~-~~liYr~k 74 (81)
T 2dk8_A 10 ADPVEIENRIIELCHQFPHGITDQ---VIQNEMP---HIEAQQRAVAINRLLSMGQLDLLRSN-TGLLYRIK 74 (81)
T ss_dssp SCHHHHHHHHHHHHHHCSSCEEHH---HHHHHCT---TSCHHHHHHHHHHHHHHTSEEEEECS-SSEEEEEC
T ss_pred ccHHHHHHHHHHHHHhCCCCCCHH---HHHHHCC---CCCHHHHHHHHHHHHHcCCeEEEecC-CeEEEEec
Confidence 346677888999999999999999 9999996 58889999999999999999999998 55555544
No 64
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=82.29 E-value=10 Score=27.98 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|||..+ -.+|.++.... --+.+ ||-.. .|+.+.+|--+|..|+..|+|.....
T Consensus 37 ~~lt~~q--~~iL~~l~~~~-~~~~~---eLa~~----l~~~~~~vs~~l~~L~~~Glv~r~~~ 90 (149)
T 4hbl_A 37 FGITYSQ--YLVMLTLWEEN-PQTLN---SIGRH----LDLSSNTLTPMLKRLEQSGWVKRERQ 90 (149)
T ss_dssp TTCCHHH--HHHHHHHHHSS-SEEHH---HHHHH----HTCCHHHHHHHHHHHHHHTSEEC---
T ss_pred cCCCHHH--HHHHHHHHHCC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 5777765 56777776653 45777 77554 59999999999999999999998754
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.61 E-value=14 Score=28.48 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2296 125 DFLQEVGNISKELELINKEL 144 (208)
Q Consensus 125 ~ll~~l~~L~~~~~~l~~el 144 (208)
.+-.++..|+.++..|++++
T Consensus 114 ~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 114 ELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 66
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=81.59 E-value=7.8 Score=28.47 Aligned_cols=55 Identities=11% Similarity=0.188 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|||..+ -.||.+++... .-+.. ||-.. -|++..+|--+|+.|++.|+|.....+
T Consensus 33 ~~l~~~~--~~iL~~l~~~~-~~t~~---ela~~----l~~s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 33 QGVTPAQ--LFVLASLKKHG-SLKVS---EIAER----MEVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp TTCCHHH--HHHHHHHHHHS-EEEHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCHHH--HHHHHHHHHcC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 4777665 56777777643 35777 77553 599999999999999999999887653
No 67
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.55 E-value=13 Score=26.90 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
.-|+|..+ -.+|.++. ....+.. ||-.. .|++..+|-.+|+.|++.|+|.....
T Consensus 32 ~~~l~~~~--~~iL~~l~--~~~~~~~---ela~~----l~~s~~tvs~~l~~Le~~glv~r~~~ 85 (146)
T 2gxg_A 32 ELNLSYLD--FLVLRATS--DGPKTMA---YLANR----YFVTQSAITASVDKLEEMGLVVRVRD 85 (146)
T ss_dssp TTTCCHHH--HHHHHHHT--TSCBCHH---HHHHH----TTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hcCCCHHH--HHHHHHHh--cCCcCHH---HHHHH----hCCCchhHHHHHHHHHHCCCEEeecC
Confidence 35777664 55777777 4556788 77553 59999999999999999999998765
No 68
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.49 E-value=22 Score=29.60 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=16.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 119 DSKNREDFLQEVGNISKELELINKELEKY 147 (208)
Q Consensus 119 ~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 147 (208)
+..+...+..++..+..++..+..++..+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666655555554443
No 69
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=81.28 E-value=7.7 Score=28.26 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc--ceeEeeccch
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT--STYFWSFPNK 80 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt--sN~YWsFps~ 80 (208)
|+|+.+ -.+|.+++.... +.+ ||-.. .|+++.+|--+|+.|++.|+|.....+. -.++.++...
T Consensus 34 ~lt~~~--~~iL~~l~~~~~--~~~---~la~~----l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~ 99 (144)
T 3f3x_A 34 NLSYLD--FSILKATSEEPR--SMV---YLANR----YFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPK 99 (144)
T ss_dssp SCCHHH--HHHHHHHHHSCE--EHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred CCCHHH--HHHHHHHHHCCC--CHH---HHHHH----HCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHH
Confidence 777765 578888887776 888 88654 5999999999999999999999876543 2334444433
No 70
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.19 E-value=3.7 Score=30.90 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 83 DRVDCKLEKITAEIEDVTK---ELAQNNEALEKSMVGRG-DSKNREDFLQEVGNISKELELINKELEKY 147 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~---~i~~l~~~ie~~~~~r~-~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 147 (208)
..++..|++++++++..+. .|.-|+..++--+.... +-..|+.+-.+.++|..++..|+.++..|
T Consensus 41 ~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 41 VAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3355555555555555544 33333333322221110 11357777788888888888887776543
No 71
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=80.68 E-value=19 Score=28.29 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2296 121 KNREDFLQEVGNISKELELINKELEKYKN---NDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCK 184 (208)
Q Consensus 121 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~~ 184 (208)
+.-..+...+.+...++..+..+|..|.+ .||++++.+...+..+...+-+|...+.-|..|..
T Consensus 87 ~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~ 153 (175)
T 4abx_A 87 ETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGA 153 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34567888888899999999999998876 69999999999999888888888877877777754
No 72
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=80.62 E-value=0.94 Score=30.47 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=38.2
Q ss_pred HHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc
Q psy2296 14 TGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 14 ~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
..+|+++..+.-|..+. ..+.+ -||....|.++|..|-..|||..|
T Consensus 13 ~~lL~yIr~sGGildI~------~~a~k-ygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIE------HFSKV-YGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEEHH------HHHHH-HCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCEEeHH------HHHHH-hCCCHHHHHHHHHHHHHCCCeecc
Confidence 35788889988887555 55555 899999999999999999999765
No 73
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=80.35 E-value=6.2 Score=29.09 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
+-|+|..+ -.+|.+++.....-+.+ ||-.. .||++.+|--+|+.|++.|+|......
T Consensus 34 ~~glt~~q--~~vL~~l~~~~~~~t~~---eLa~~----l~i~~~tvs~~l~~Le~~Glv~r~~~~ 90 (150)
T 3fm5_A 34 PTGLRVRS--YSVLVLACEQAEGVNQR---GVAAT----MGLDPSQIVGLVDELEERGLVVRTLDP 90 (150)
T ss_dssp GGTCCHHH--HHHHHHHHHSTTCCCSH---HHHHH----HTCCHHHHHHHHHHHHTTTSEEC----
T ss_pred HcCCCHHH--HHHHHHHHhCCCCcCHH---HHHHH----HCCCHhHHHHHHHHHHHCCCEEeeCCc
Confidence 35788765 56788887766667888 87543 589999999999999999999876543
No 74
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=80.20 E-value=16 Score=27.35 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHhhhc-cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc--ceeEeeccchh
Q psy2296 5 KGLSVEEKRTGLLELFHEK-EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT--STYFWSFPNKA 81 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~-~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt--sN~YWsFps~~ 81 (208)
-|||..+ -.+|.+++.. ..--+.+ ||-.. .||...+|--+|..|+..|+|....... =.++.++-..+
T Consensus 42 ~glt~~q--~~vL~~l~~~~~~~~t~~---eLa~~----l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G 112 (168)
T 3u2r_A 42 FELSAQQ--YNTLRLLRSVHPEGMATL---QIADR----LISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAG 112 (168)
T ss_dssp TTCCHHH--HHHHHHHHHHTTSCEEHH---HHHHH----C---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHH
T ss_pred cCCCHHH--HHHHHHHHhcCCCCcCHH---HHHHH----HCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHH
Confidence 5788765 5577777775 3567888 87554 5999999999999999999999876542 23444444443
No 75
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.11 E-value=25 Score=29.30 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHHH
Q psy2296 151 DPDTLKLIENTAQRAK 166 (208)
Q Consensus 151 Dp~~i~~~~~~~~~~k 166 (208)
+|..+..+.+++..++
T Consensus 88 ~~kE~~aL~kEie~~~ 103 (256)
T 3na7_A 88 SERELRSLNIEEDIAK 103 (256)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 76
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=79.96 E-value=15 Score=26.87 Aligned_cols=51 Identities=24% Similarity=0.445 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
|+|+.+ -.+|.++ ....-+.+ ||-.. -|+++.+|--+|..|++.|+|..+|
T Consensus 35 ~lt~~q--~~iL~~l--~~~~~t~~---eLa~~----l~~~~~~vs~~l~~Le~~Glv~r~~ 85 (151)
T 3kp7_A 35 GISAEQ--SHVLNML--SIEALTVG---QITEK----QGVNKAAVSRRVKKLLNAELVKLEK 85 (151)
T ss_dssp TCCHHH--HHHHHHH--HHSCBCHH---HHHHH----HCSCSSHHHHHHHHHHHTTSEEC--
T ss_pred CCCHHH--HHHHHHH--HcCCcCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 566654 4567777 45557777 76443 5999999999999999999999865
No 77
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=79.84 E-value=15 Score=26.69 Aligned_cols=54 Identities=11% Similarity=0.277 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
|||..+ -.+|.++.... --+.+ ||-.. .|+++.+|--+|+.|++.|+|..+...
T Consensus 37 ~l~~~~--~~iL~~l~~~~-~~t~~---ela~~----l~~~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 37 GIGMTE--WRIISVLSSAS-DCSVQ---KISDI----LGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp TCCHHH--HHHHHHHHHSS-SBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHH--HHHHHHHHcCC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 777764 46777777655 56777 76443 699999999999999999999987653
No 78
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=79.19 E-value=3 Score=29.67 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeecc
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFP 78 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFp 78 (208)
.++-.++||+.|.+.....+-. ||-+. +||..--|--++..|=.+|.|.+.| -.||+..
T Consensus 17 ~~d~eekVLe~LkeaG~Plkag---eIae~----~GvdKKeVdKaik~LKkEgkI~SPk----RCyw~~~ 75 (80)
T 2lnb_A 17 EGHLEQRILQVLTEAGSPVKLA---QLVKE----CQAPKRELNQVLYRMKKELKVSLTS----PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHHHHTSCEEHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEEEEE----TTEEEES
T ss_pred cchHHHHHHHHHHHcCCCCCHH---HHHHH----HCCCHHHHHHHHHHHHHcCCccCCC----CceeeCC
Confidence 4567899999999999998888 77553 7888899999999999999999883 2499875
No 79
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=78.91 E-value=1.4 Score=34.49 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhc-----CCCHHHHhhhcCCCCCCc
Q psy2296 160 NTAQRAKEAANRWTDNLFSLKSWCKNKF-----GLEETALNKHFSIPEEMD 205 (208)
Q Consensus 160 ~~~~~~k~aanrwTDNI~~l~~~~~~k~-----~~~~~~i~~~f~Ip~d~d 205 (208)
..+..+..|||.. ||-.|.++|++.. |.+++++|+.||||.||-
T Consensus 96 ~~l~eLi~AAnyL--~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t 144 (160)
T 2p1m_A 96 ATLFELILAANYL--NIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT 144 (160)
T ss_dssp -----CHHHHHHT--TCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 3344567788776 5888888888773 779999999999999973
No 80
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=78.89 E-value=3 Score=29.52 Aligned_cols=67 Identities=10% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHH
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDC 87 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~ 87 (208)
..|-+||..+.... --+.. ||-.. .|++..+|--.|+.|.+. +|..++-|...| |+...........
T Consensus 27 ~~Rl~IL~~l~~~~-~~~~~---ela~~----l~is~stvs~hL~~L~~~-lv~~~~~gr~~~-y~l~~~~~~~~~~ 93 (99)
T 2zkz_A 27 PMRLKIVNELYKHK-ALNVT---QIIQI----LKLPQSTVSQHLCKMRGK-VLKRNRQGLEIY-YSINNPKVEGIIK 93 (99)
T ss_dssp HHHHHHHHHHHHHS-CEEHH---HHHHH----HTCCHHHHHHHHHHHBTT-TBEEEEETTEEE-EECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CcCHH---HHHHH----HCcCHHHHHHHHHHHHHH-hhhheEeCcEEE-EEEChHHHHHHHH
Confidence 35666774444322 24555 55432 599999999999999999 999999998755 4555555444333
No 81
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=78.87 E-value=16 Score=26.37 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|||..+ -.+|.++.... .-+.. ||-.. -|++..+|--+|+.|++.|+|.....+
T Consensus 25 ~~lt~~~--~~iL~~l~~~~-~~t~~---~la~~----l~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 25 LSLTRGQ--YLYLVRVCENP-GIIQE---KIAEL----IKVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp GTCTTTH--HHHHHHHHHST-TEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCHHH--HHHHHHHHHCc-CcCHH---HHHHH----HCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 4666554 45677776654 45677 66554 489999999999999999999987654
No 82
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=78.64 E-value=6.6 Score=28.85 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHhhhcc-chhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKE-EFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~-~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|+|..+ -.+|.+++... .--+.+ ||-.. .|+.+.+|--+|..|++.|+|.....
T Consensus 37 ~glt~~q--~~vL~~l~~~~~~~~t~~---eLa~~----l~~~~~~vs~~l~~L~~~Glv~r~~~ 92 (148)
T 3jw4_A 37 LGLNSQQ--GRMIGYIYENQESGIIQK---DLAQF----FGRRGASITSMLQGLEKKGYIERRIP 92 (148)
T ss_dssp TTCCHHH--HHHHHHHHHHTTTCCCHH---HHHHC----------CHHHHHHHHHHTTSBCCC--
T ss_pred CCCCHHH--HHHHHHHHhCCCCCCCHH---HHHHH----HCCChhHHHHHHHHHHHCCCEEeeCC
Confidence 4777665 56777777653 567888 77654 59999999999999999999998764
No 83
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=78.24 E-value=9.8 Score=34.81 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 80 KASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 80 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
+....+..+...++.+++.++.+...+..+|..++... +++..++++..+|+.+++.+.+++..+.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG---EPVDELLAKSREIVKRIGELENEVEELK 96 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777788888888888888887765433 3456777777777777777777766654
No 84
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.24 E-value=11 Score=35.05 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 80 KASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGD-----SKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 80 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~-----~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
+....+..+...++.+++.++.+...+..+|...+...+. .++++.++++..+|+.+++.+.+++..+.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777888888887777777765543221 24677888888888888888877776655
No 85
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=78.02 E-value=3 Score=31.07 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
+.-..+||+++.+.. .-+.. ||-.... -||++++|-..|+.|.+.|+|... |.. +|+.-....
T Consensus 12 d~~d~~IL~~L~~~g-~~s~~---eLA~~l~--~giS~~aVs~rL~~Le~~GLV~~~--~rg--~Y~LT~~G~ 74 (111)
T 3b73_A 12 TIWDDRILEIIHEEG-NGSPK---ELEDRDE--IRISKSSVSRRLKKLADHDLLQPL--ANG--VYVITEEGE 74 (111)
T ss_dssp CHHHHHHHHHHHHHS-CBCHH---HHHTSTT--CCSCHHHHHHHHHHHHHTTSEEEC--STT--CEEECHHHH
T ss_pred CHHHHHHHHHHHHcC-CCCHH---HHHHHHh--cCCCHHHHHHHHHHHHHCCCEEec--CCc--eEEECchHH
Confidence 445688999997743 56777 7765321 199999999999999999999875 444 777766554
No 86
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.12 E-value=2.2 Score=29.79 Aligned_cols=58 Identities=19% Similarity=0.362 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhc-----cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc-ceeEee
Q psy2296 12 KRTGLLELFHEK-----EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT-STYFWS 76 (208)
Q Consensus 12 Kr~~il~~f~~~-----~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt-sN~YWs 76 (208)
-...||+|+.+. ..+.+.. ||-.. -||+++||...|..|...|+|...--|- +--+|-
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~---EIa~~----lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~ 68 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTR---DIADA----AGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHH---HHHHH----HCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHHH
Confidence 467899999887 4667777 76443 6999999999999999999998875331 344553
No 87
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=77.07 E-value=14 Score=26.34 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
|+|..+ -.+|.++.... .-+.+ ||-.. -|++..+|--+|+.|++.|+|.....
T Consensus 35 ~l~~~~--~~iL~~l~~~~-~~t~~---ela~~----l~~~~~tvs~~l~~L~~~glv~r~~~ 87 (140)
T 2nnn_A 35 GLTPTQ--WAALVRLGETG-PCPQN---QLGRL----TAMDAATIKGVVERLDKRGLIQRSAD 87 (140)
T ss_dssp CCCHHH--HHHHHHHHHHS-SBCHH---HHHHH----TTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHH--HHHHHHHHHcC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 788764 56777776644 56777 77553 59999999999999999999998654
No 88
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=76.90 E-value=3.8 Score=32.75 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHhhhcc--chhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEe
Q psy2296 8 SVEEKRTGLLELFHEKE--EFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFW 75 (208)
Q Consensus 8 S~eEKr~~il~~f~~~~--~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YW 75 (208)
+.|+=.++|+++.+... +.+++= ..++.++.+ -|++.--.+++|+.++++|+++.|.-.++..||
T Consensus 96 ~~d~~~~~il~~~~~~~g~d~~~vt--~~~~~la~~-~~ws~~~a~e~L~~~e~~G~l~~D~~~~G~~y~ 162 (169)
T 1u5t_B 96 KFDVVKEKLVDLIGDNPGSDLLRLT--QILSSNNSK-SNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYY 162 (169)
T ss_dssp CSHHHHHHHHHHHHHSCSBCHHHHH--HHHHTSCTT-CCCCHHHHHHHHHHHHHHTSEEEEECSSCEEEE
T ss_pred ChhHHHHHHHHHHHhcCCCCccccc--HHHHHHHHH-hCCCHHHHHHHHHHHHHcCCEEEECCCCcceEE
Confidence 45554567888887542 333332 122556666 899999999999999999999999644456676
No 89
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=76.65 E-value=19 Score=26.44 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
|+|..+ -.+|.+++.....-+.+ ||-+. .||+..+|--+|+.|++.|+|.....+
T Consensus 44 ~l~~~~--~~iL~~L~~~~~~~~~~---ela~~----l~i~~~tvs~~l~~Le~~Gli~r~~~~ 98 (160)
T 3boq_A 44 GLSLAK--FDAMAQLARNPDGLSMG---KLSGA----LKVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp SCCHHH--HHHHHHHHHCTTCEEHH---HHHHH----CSSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred CCCHHH--HHHHHHHHHcCCCCCHH---HHHHH----HCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 566553 45777775444557788 77654 599999999999999999999987653
No 90
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=76.26 E-value=9.6 Score=27.72 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|+|+.+ -.+|.+++... --+.+ ||-.. .||++.+|--+|..|++.|+|......
T Consensus 33 ~~lt~~~--~~vL~~l~~~~-~~t~~---eLa~~----l~~~~~tvs~~l~~L~~~Glv~r~~~~ 87 (142)
T 3ech_A 33 LDLTPPD--VHVLKLIDEQR-GLNLQ---DLGRQ----MCRDKALITRKIRELEGRNLVRRERNP 87 (142)
T ss_dssp CCCCHHH--HHHHHHHHHTT-TCCHH---HHHHH----HC---CHHHHHHHHHHHTTSEEC----
T ss_pred CCCCHHH--HHHHHHHHhCC-CcCHH---HHHHH----hCCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 4777765 57788887755 46788 77543 599999999999999999999987653
No 91
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=76.25 E-value=20 Score=26.56 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|||..+ -.+|.++.... --+.. ||-.. .|+.+.+|--+|..|++.|+|.....
T Consensus 46 ~~lt~~q--~~vL~~l~~~~-~~t~~---eLa~~----l~~~~~tvs~~l~~Le~~Glv~r~~~ 99 (159)
T 3s2w_A 46 YGIGSGQ--FPFLMRLYRED-GINQE---SLSDY----LKIDKGTTARAIQKLVDEGYVFRQRD 99 (159)
T ss_dssp GTCCTTT--HHHHHHHHHSC-SEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCHHH--HHHHHHHHHCC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 3566544 45666666543 34667 76433 59999999999999999999988764
No 92
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=76.04 E-value=1.4 Score=39.38 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=32.0
Q ss_pred cchHHHHHHHhhhcCcccccccccceeEeeccchh
Q psy2296 47 SQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKA 81 (208)
Q Consensus 47 ~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~ 81 (208)
--.+.+.++.||.+|+|..||+.+.|.=|.|||..
T Consensus 226 ~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~ 260 (359)
T 1m6e_X 226 WQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPT 260 (359)
T ss_dssp THHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSH
T ss_pred HHHHHHHHHHHHHccccchhhhhccCCCccCCCHH
Confidence 34689999999999999999999999999999973
No 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=75.89 E-value=27 Score=35.37 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy2296 153 DTLKLIENTAQRAKEAANRWT 173 (208)
Q Consensus 153 ~~i~~~~~~~~~~k~aanrwT 173 (208)
+.+..++++...+.+.++.-.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544443333
No 94
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=75.85 E-value=10 Score=27.37 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc--ccceeEeeccch
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI--GTSTYFWSFPNK 80 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi--GtsN~YWsFps~ 80 (208)
-|||..+ -.+|.++.... -.+.+ ||-.. .|++..+|-.+|..|++.|+|..... +.-.+|.+....
T Consensus 33 ~~l~~~~--~~iL~~l~~~~-~~~~~---ela~~----l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~ 100 (142)
T 2bv6_A 33 YNLTYPQ--FLVLTILWDES-PVNVK---KVVTE----LALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 100 (142)
T ss_dssp HTCCHHH--HHHHHHHHHSS-EEEHH---HHHHH----TTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHH
T ss_pred cCCCHHH--HHHHHHHHHcC-CcCHH---HHHHH----HCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChH
Confidence 4677654 45777777654 36778 77554 48999999999999999999998776 233444444433
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=75.77 E-value=20 Score=25.90 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=46.6
Q ss_pred CccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHH
Q psy2296 45 IISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNRE 124 (208)
Q Consensus 45 I~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~ 124 (208)
++.|+|+|+.+.|- -||.+....++..--.|+....+.......+....+-+ .+..
T Consensus 3 Lv~msVreLN~~L~-----------------gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE-------~e~~ 58 (90)
T 2wt7_B 3 LVSMSVRELNRHLR-----------------GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLE-------NEKT 58 (90)
T ss_dssp HHHSCHHHHHTTCT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred cccCCHHHHHHHHc-----------------CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 56899999998871 35666666777776777776666666555554332211 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 125 DFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 125 ~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
.+..+++.|..++..+..++..|+
T Consensus 59 ~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 59 QLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544443
No 96
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=75.77 E-value=12 Score=27.26 Aligned_cols=62 Identities=10% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
..++..+..++..++++..-+.+..-++... +...|..+..++.+.+.++..|+.++..+..
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~-----p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREI-----PPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----CTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555544444433322221 4567999999999999999999998887654
No 97
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=75.53 E-value=4.2 Score=27.98 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=42.5
Q ss_pred HHHHHHHhhhcc--chhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeec
Q psy2296 13 RTGLLELFHEKE--EFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSF 77 (208)
Q Consensus 13 r~~il~~f~~~~--~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsF 77 (208)
..+||.++.+.. +-.+.+ ||=+. -||+.-+|.-.|..|.++|+|... |+..=||..
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~---eLA~~----Lgvs~~tV~~~L~~L~~~G~I~~~--g~~~~~W~i 73 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAH---DLSGK----LGTPKKEINRVLYSLAKKGKLQKE--AGTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHH---HHHHH----HCCCHHHHHHHHHHHHHHTSEEEE--CSSSCEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEec--CCCCCceEe
Confidence 478999998876 477888 66433 588889999999999999999654 554455543
No 98
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=75.45 E-value=20 Score=25.65 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=35.1
Q ss_pred HHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 15 GLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 15 ~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
.||..+.. .--+.. ||-+..| ||+..+|-..|..|.+.|+|.....+
T Consensus 26 ~IL~~L~~--~~~~~~---eLa~~l~---~is~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 26 SLMDELFQ--GTKRNG---ELMRALD---GITQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp HHHHHHHH--SCBCHH---HHHHHST---TCCHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred HHHHHHHh--CCCCHH---HHHHHhc---cCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 45555543 234556 7766554 89999999999999999999988764
No 99
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=75.32 E-value=4.6 Score=29.84 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccc
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVE 64 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~ 64 (208)
+...+||..++.... -+.. ||-+. -|++..+|-..|+.|.++|+|.
T Consensus 4 ~~~~~il~~L~~~~~-~~~~---ela~~----lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 4 ERDKIILEILEKDAR-TPFT---EIAKK----LGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp SHHHHHHHHHHHCTT-CCHH---HHHHH----HTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCC-CCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEe
Confidence 345678888876543 3677 76543 4999999999999999999996
No 100
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.03 E-value=22 Score=26.05 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 80 KASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKEL 144 (208)
Q Consensus 80 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el 144 (208)
+....++..+..|+.+......++..|...+..... -|...-.+...+..+++.|...|
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~------~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE------LRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888877755 34555556666666666666655
No 101
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=74.59 E-value=8.7 Score=27.34 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=25.0
Q ss_pred cCCccchHHHHHHHhhhcCcccccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
.|+++-+|..++..|++-|+|.....|
T Consensus 30 ~~ls~~~~~~~l~~L~~~GLI~~~~~~ 56 (95)
T 1r7j_A 30 ANLSYALTGRYIKMLMDLEIIRQEGKQ 56 (95)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred hCcCHHHHHHHHHHHHHCCCeEEECCe
Confidence 899999999999999999999988654
No 102
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=74.48 E-value=15 Score=34.08 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 81 ASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 81 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
....+..+...++.+++.++.+...+..+|..++...+ +...++++..+|+.+++.+.+++..+.
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~---~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE---DAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666777777777777777777766655333 345677777777777777777666554
No 103
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=74.20 E-value=22 Score=25.72 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
.-|||..+ -.+|.++.... .-+.. ||-+. .|++..+|--+|+.|++.|+|.....
T Consensus 37 ~~~l~~~~--~~iL~~l~~~~-~~t~~---ela~~----l~~~~~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 37 NYPITPPQ--FVALQWLLEEG-DLTVG---ELSNK----MYLACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp TSSSCHHH--HHHHHHHHHHC-SBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHH--HHHHHHHHHcC-CCCHH---HHHHH----HCCCchhHHHHHHHHHHCCCeeecCC
Confidence 35777654 56777776643 45667 76543 59999999999999999999998765
No 104
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=74.00 E-value=22 Score=25.63 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc--ceeEeeccchh
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT--STYFWSFPNKA 81 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt--sN~YWsFps~~ 81 (208)
+-|+|..+ -.+|.++... ..-+.+ ||-.. .|+++.+|--+|+.|++.|+|....... -.++.++...+
T Consensus 32 ~~~lt~~~--~~iL~~l~~~-~~~t~~---eLa~~----l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G 101 (143)
T 3oop_A 32 SYDVTPEQ--WSVLEGIEAN-EPISQK---EIALW----TKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKG 101 (143)
T ss_dssp TSSSCHHH--HHHHHHHHHH-SSEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHH
T ss_pred hCCCCHHH--HHHHHHHHHc-CCcCHH---HHHHH----HCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHH
Confidence 45788776 5667777665 445777 76443 5999999999999999999998766432 23444444433
No 105
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=73.91 E-value=22 Score=25.48 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHhhhcc-chhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKE-EFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~-~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|+|..+ -.+|.+++... ..-+.. ||-.. .|+++.+|--+|..|++.|+|......
T Consensus 27 ~~lt~~~--~~vL~~l~~~~~~~~t~~---ela~~----l~~~~~tvs~~l~~Le~~Gli~r~~~~ 83 (139)
T 3eco_A 27 FDITNEQ--GHTLGYLYAHQQDGLTQN---DIAKA----LQRTGPTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp GTCCHHH--HHHHHHHHHSTTTCEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred cCCCHHH--HHHHHHHHhcCCCCcCHH---HHHHH----hCCCcccHHHHHHHHHHCCCEeecCCC
Confidence 4777654 56777777765 567888 77544 599999999999999999999987653
No 106
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=73.62 E-value=23 Score=25.65 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=49.8
Q ss_pred HHHHHHHhhh-ccchhhhcchHHHHhhcccccC--Ccc-chHHHHHHHhhhcCccccccc---ccceeEeeccchhhHHH
Q psy2296 13 RTGLLELFHE-KEEFFQLKLIIELEKLAPKEKG--IIS-QSVKEILQSLVDDGLVESEKI---GTSTYFWSFPNKASDRV 85 (208)
Q Consensus 13 r~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~G--I~~-~~VKdvlq~LVDDglV~~EKi---GtsN~YWsFps~~~~~~ 85 (208)
+-.||.++.+ ...+|.|. .+|+..+ - .+ |++ -+|=-+|..|.++|+|..... |-..-|++.-.......
T Consensus 15 ~~~IL~~L~~~~~~gyel~--~~l~~~g-~-~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l 90 (118)
T 2esh_A 15 ASTILLLVAEKPSHGYELA--ERLAEFG-I-EIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYL 90 (118)
T ss_dssp HHHHHHHHHHSCBCHHHHH--HHHHTTC-C-SSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHH--HHHHHhC-C-cccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHH
Confidence 3456677654 55677663 1565522 1 24 889 999999999999999998874 44455668877766555
Q ss_pred HHHHHH
Q psy2296 86 DCKLEK 91 (208)
Q Consensus 86 ~~~~~~ 91 (208)
......
T Consensus 91 ~~~~~~ 96 (118)
T 2esh_A 91 REILRS 96 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 107
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=73.32 E-value=17 Score=26.02 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
|||..+ -.+|.++.... --+.. ||-+. .||+..+|-.+|+.|++.|+|.....
T Consensus 28 ~l~~~~--~~iL~~l~~~~-~~~~~---ela~~----l~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 28 GISLTR--YSILQTLLKDA-PLHQL---ALQER----LQIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp SSCHHH--HHHHHHHHHHC-SBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHH--HHHHHHHHhCC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 666654 56777776643 35677 76553 59999999999999999999998765
No 108
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=73.25 E-value=11 Score=26.97 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=29.3
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeEeec
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSF 77 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsF 77 (208)
.||+..+|--.|+.|.+.|+|..++-|-..+|-.-
T Consensus 55 l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~ 89 (119)
T 2lkp_A 55 IGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLY 89 (119)
T ss_dssp HSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEES
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEc
Confidence 59999999999999999999999997765544433
No 109
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=72.71 E-value=16 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.3
Q ss_pred cCCccchHHHHHHHhhhcCccccc-cccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE-KIGT 70 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E-KiGt 70 (208)
-||+..||.+.++.|.++|+|... ..||
T Consensus 48 ~gVSr~tVReAl~~L~~eGlv~~~~g~G~ 76 (134)
T 4ham_A 48 IGVNPNTVSKAYQELERQEVIITVKGKGT 76 (134)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HCCCHHHHHHHHHHHHHCCcEEEEcCcEE
Confidence 699999999999999999999875 3444
No 110
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.71 E-value=23 Score=25.15 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 89 LEKITAEIEDVTKELAQNNEALEKSM 114 (208)
Q Consensus 89 ~~~l~~~i~~~~~~i~~l~~~ie~~~ 114 (208)
+++|.++|..+-..|.-|+.+++.++
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444444443
No 111
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=72.66 E-value=8.8 Score=30.64 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=48.0
Q ss_pred CCCCCCCCH--HHHHHHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeec
Q psy2296 1 MSKKKGLSV--EEKRTGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSF 77 (208)
Q Consensus 1 MskkkglS~--eEKr~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsF 77 (208)
|| +|+|- =|-+.+||+++.+ ..+.|.+= |.-|++--.|.=+|-.|--||+|..-|+|-.. |||.
T Consensus 1 MP--rk~Td~v~erk~~ILE~Lk~G~~~t~~Ia----------k~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~a-yw~L 67 (165)
T 2vxz_A 1 MP--IGHSREVLVRLRDILALLADGCKTTSLIQ----------QRLGLSHGRAKALIYVLEKEGRVTRVAFGNVA-LVCL 67 (165)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCCEEHHHHH----------HHHTCCHHHHHHHHHHHHHTTSCEEEEETTEE-EEES
T ss_pred CC--cchhHHHHHHHHHHHHHHHhCCccHHHHH----------HHhCCcHHHHHHHHHHHHhcCceEEEEEccEE-EEEe
Confidence 55 34554 4678899999983 23333332 33699999999999999999999999999987 7999
Q ss_pred c
Q psy2296 78 P 78 (208)
Q Consensus 78 p 78 (208)
.
T Consensus 68 ~ 68 (165)
T 2vxz_A 68 S 68 (165)
T ss_dssp C
T ss_pred c
Confidence 4
No 112
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=72.54 E-value=2.5 Score=35.29 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
..++..=+|--+||++|.....-.++. ||-.. .|++.-||--+|+.|++.|+|..+.-|
T Consensus 16 ~~~v~sl~r~l~iL~~l~~~~~~~~~~---eia~~----~gl~kstv~r~l~tL~~~G~v~~~~~~ 74 (260)
T 2o0y_A 16 DAGVRSVTRVIDLLELFDAAHPTRSLK---ELVEG----TKLPKTTVVRLVATMCARSVLTSRADG 74 (260)
T ss_dssp --CCHHHHHHHHHHTTCBTTBSSBCHH---HHHHH----HCCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred CcccHHHHHHHHHHHHHhhCCCCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEECCCC
Confidence 356667778889999998767778999 87653 599999999999999999999987543
No 113
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=72.51 E-value=23 Score=25.23 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhhccc-hhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEE-FFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~-~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|+|..+ -.+|.++..... .-+.. ||-+. .|++..+|-.+|+.|++.|+|.....
T Consensus 30 ~~lt~~~--~~iL~~l~~~~~~~~~~~---ela~~----l~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 30 YDLTGTQ--MTIIDYLSRNKNKEVLQR---DLESE----FSIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp TTCCHHH--HHHHHHHHHTTTSCCBHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCHHH--HHHHHHHHHCCCCCcCHH---HHHHH----HCCCcchHHHHHHHHHHCCCEEeeCC
Confidence 5788764 557777776542 45778 77543 59999999999999999999988765
No 114
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=71.89 E-value=11 Score=33.03 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=33.3
Q ss_pred ccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 40 PKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 40 pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
.+..||+.-+|=++|++|.+-|+|.... |.-..|.+-|..
T Consensus 39 a~~~gv~~~~Vy~~L~~L~~~GlV~~~~-g~p~~y~av~p~ 78 (342)
T 3qph_A 39 STKSGIPYNRVYDTISSLKLRGFVTEIE-GTPKVYAAYSPR 78 (342)
T ss_dssp SSSTTSSSCSCCHHHHHHHHHTSEEEEC-CTTCEEEECCHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEEEc-CceeEEEEcCHH
Confidence 3447999999999999999999999885 666777777754
No 115
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=71.63 E-value=11 Score=26.09 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=38.3
Q ss_pred HHHHHHHHhhhccch---hhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccccee
Q psy2296 12 KRTGLLELFHEKEEF---FQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTY 73 (208)
Q Consensus 12 Kr~~il~~f~~~~~~---f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~ 73 (208)
+...+|..+.....- -+.+ ||-.. .||...+|--+|..|+..|+|..+.=|-..+
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~---eLa~~----l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~ 70 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQ---YIASK----VNSPHSYVWLIIKKFEEAKMVECELEGRTKI 70 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHH---HHHHH----SSSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred hHHHHHHHHHHccCCCCCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCcCccCCCCCCeEE
Confidence 445566666554444 6777 77554 5999999999999999999995444444333
No 116
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=71.52 E-value=7.5 Score=29.28 Aligned_cols=65 Identities=17% Similarity=0.408 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc-------cccccc--eeE-eecc
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES-------EKIGTS--TYF-WSFP 78 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~-------EKiGts--N~Y-WsFp 78 (208)
+++...+||..++... --+.. ||-+ . .|+++.+|-..++.|.+.|+|.. .+.|-. .++ |..|
T Consensus 5 ld~~~~~il~~L~~~~-~~s~~---ela~---~-lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~ 76 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDG-KAPLR---EISK---I-TGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVK 76 (151)
T ss_dssp CCHHHHHHHHHHHHCT-TCCHH---HHHH---H-HCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred cCHHHHHHHHHHHHcC-CCCHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEEC
Confidence 4556678999998764 35666 6533 2 69999999999999999999975 788864 333 5666
Q ss_pred chh
Q psy2296 79 NKA 81 (208)
Q Consensus 79 s~~ 81 (208)
...
T Consensus 77 ~~~ 79 (151)
T 2cyy_A 77 AGK 79 (151)
T ss_dssp TTC
T ss_pred ccc
Confidence 443
No 117
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=71.37 E-value=11 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 127 LQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 127 l~~l~~L~~~~~~l~~el~~~~~ 149 (208)
-.+|.+....+..|+.++.+|+.
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666554
No 118
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=71.19 E-value=5.3 Score=32.89 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
|++.=+|--+||++|.......++. ||-.. .|++.-||--+|+.|++.|+|..+
T Consensus 3 ~v~sl~r~l~iL~~l~~~~~~~~~~---ela~~----~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 3 HMNTLKKAFEILDFIVKNPGDVSVS---EIAEK----FNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp -CTTHHHHHHHHHHHHHCSSCBCHH---HHHHH----TTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCcEEEC
Confidence 4555568889999998876678999 87543 599999999999999999999988
No 119
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=70.90 E-value=18 Score=27.50 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=60.8
Q ss_pred CCCCCCHHHHHHHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc-----ccceeEee
Q psy2296 3 KKKGLSVEEKRTGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI-----GTSTYFWS 76 (208)
Q Consensus 3 kkkglS~eEKr~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi-----GtsN~YWs 76 (208)
+++.++.+.-.--||.++.+ ...+|.+. .+|+...+ .-+|+.-+|=-+|..|.++|+|..... |-..-|++
T Consensus 26 ~~~~l~~~~~~~~IL~lL~~~~~~Gyei~--k~l~~~~~-~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~ 102 (138)
T 2e1n_A 26 PPHYLSKELAVCYVLAVLRHEDSYGTELI--QHLETHWP-NYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQ 102 (138)
T ss_dssp CCEECCHHHHHHHHHHHHTTSCEEHHHHH--HHHHHHST-TEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEE
T ss_pred ccccccchHHHHHHHHHHHhCCCcHHHHH--HHHHHHcC-CCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEE
Confidence 44567777666668888864 55677653 27777663 358999999999999999999998753 44567888
Q ss_pred ccchhhHHHHHHHH
Q psy2296 77 FPNKASDRVDCKLE 90 (208)
Q Consensus 77 Fps~~~~~~~~~~~ 90 (208)
.-......+.....
T Consensus 103 LT~~Gr~~l~~~~~ 116 (138)
T 2e1n_A 103 LAQANDDRSRDLAQ 116 (138)
T ss_dssp ESCSCCHHHHHHHH
T ss_pred ECHHHHHHHHHHHH
Confidence 88877655444433
No 120
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=70.81 E-value=24 Score=35.71 Aligned_cols=14 Identities=7% Similarity=0.060 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHh
Q psy2296 135 KELELINKELEKYK 148 (208)
Q Consensus 135 ~~~~~l~~el~~~~ 148 (208)
..+..|+++...++
T Consensus 1023 ~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 121
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.78 E-value=24 Score=25.07 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALE 111 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie 111 (208)
.++..+++.+-..|.-++-++.+|+++-.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544444444444444444433
No 122
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=70.78 E-value=22 Score=25.76 Aligned_cols=52 Identities=6% Similarity=0.124 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHhhh
Q psy2296 121 KNREDFLQEVGNISKELELINKELEK-YKNNDPDTLKLIENTAQRAKEAANRW 172 (208)
Q Consensus 121 ~eR~~ll~~l~~L~~~~~~l~~el~~-~~~~Dp~~i~~~~~~~~~~k~aanrw 172 (208)
++|...+.+.+..-.+-.+|-.+++- ....+|..=..+...+..++..++++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~l 97 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555544444444333333322 12224444444455555555555444
No 123
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=70.51 E-value=30 Score=26.76 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy2296 89 LEKITAEIEDVTKELAQNNEALEKSMVGR--GDSKNREDFLQEVGNISKELELINKELEKYKNNDP 152 (208)
Q Consensus 89 ~~~l~~~i~~~~~~i~~l~~~ie~~~~~r--~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp 152 (208)
+++|+++++....+..+..+.|..+...- .++.+....-.+...+..++..|...|....-.||
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~vi~~ 77 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVILEE 77 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 55677777776667777777888777643 34556777777888889999999999998776665
No 124
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.28 E-value=27 Score=25.00 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|+|..+ -.+|.++......-+.. ||-.. .|++..+|-.+|+.|++.|+|.....+
T Consensus 33 ~~l~~~~--~~iL~~l~~~~~~~t~~---~la~~----l~~s~~~vs~~l~~L~~~glv~r~~~~ 88 (146)
T 2fbh_A 33 LGLSQAR--WLVLLHLARHRDSPTQR---ELAQS----VGVEGPTLARLLDGLESQGLVRRLAVA 88 (146)
T ss_dssp GCCTTTH--HHHHHHHHHCSSCCBHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEECCB
T ss_pred CCCCHHH--HHHHHHHHHcCCCCCHH---HHHHH----hCCChhhHHHHHHHHHHCCCeeecCCC
Confidence 4666654 45777773344556777 77553 599999999999999999999987653
No 125
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=69.83 E-value=2.9 Score=33.11 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCc-ccccc
Q psy2296 7 LSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGL-VESEK 67 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDgl-V~~EK 67 (208)
|+..+.+.+||.++.+...+.+.+ ||-.. -||+..||..-|+.|.+.|+ |....
T Consensus 17 m~~~~R~~~Il~~L~~~~~~~s~~---eLa~~----l~vS~~Ti~rdi~~L~~~G~~I~~~~ 71 (187)
T 1j5y_A 17 TVRQERLKSIVRILERSKEPVSGA---QLAEE----LSVSRQVIVQDIAYLRSLGYNIVATP 71 (187)
T ss_dssp HHHHHHHHHHHHHHHHCSSCBCHH---HHHHH----HTSCHHHHHHHHHHHHHHTCCCEEET
T ss_pred hhHHHHHHHHHHHHHHcCCCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCeEEEEC
Confidence 445678889999999877788999 87543 59999999999999999999 86543
No 126
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=69.77 E-value=4.6 Score=38.31 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcc----cccCCccchHHHHHHHhhhcCcccccccccceeEee
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAP----KEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWS 76 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~p----K~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWs 76 (208)
+.=..+||++..+ ..+-+.- +|-+... + +|++.-..+++|+.++++|++..|.-..+.|||-
T Consensus 493 ~~~~~~il~l~~~-~g~vT~~---~la~~lg~~~~~-~~Ws~~~A~e~L~~~e~eG~l~rDd~~~G~~yyp 558 (566)
T 1w7p_D 493 DVVKEKLVDLIGD-NPGSDLL---RLTQILSSNNSK-SNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYK 558 (566)
T ss_dssp HHHHHHHHHHHTT-STTCCHH---HHHHHHSCSSSC-CCBCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHh-cCCcCHH---HHHHHhCCcccc-CcccHHHHHHHHHHHHHcCCEEEECCCCceEEeh
Confidence 4446788888765 4555666 6665443 3 6799999999999999999999996444565653
No 127
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=69.45 E-value=11 Score=27.86 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=22.5
Q ss_pred cCCccchHHHHHHHhhhcCccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
-||+..+|.+.++.|+++|+|...
T Consensus 47 ~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 47 LAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCcCHHHHHHHHHHHHHCCeEEEe
Confidence 699999999999999999999765
No 128
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.18 E-value=52 Score=30.34 Aligned_cols=100 Identities=12% Similarity=0.192 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALEKSMVGRG-DSKNREDFLQEVGNISKELELINKELEKYKNN-DPDTLKLIENTA 162 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~-~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~-Dp~~i~~~~~~~ 162 (208)
+...++.|+..++.+..........+...+..-. ...........+++...++++++..++..-.. -|..|..++..+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~ 177 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVI 177 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 4445566666666655554443333333332211 01122333334555555666655555544332 377888888888
Q ss_pred HHHHHHHhhhhhhHHHHHHHHH
Q psy2296 163 QRAKEAANRWTDNLFSLKSWCK 184 (208)
Q Consensus 163 ~~~k~aanrwTDNI~~l~~~~~ 184 (208)
..+...+.....-+..+...|.
T Consensus 178 ~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 178 DSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888888887777777764
No 129
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.04 E-value=8.7 Score=28.72 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc-------cccccc--ee-Eeecc
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES-------EKIGTS--TY-FWSFP 78 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~-------EKiGts--N~-YWsFp 78 (208)
+++...+||.+++... .-+.. ||=+ . .|+++.+|-..|+.|.+.|+|.. .+.|-. .+ .|..|
T Consensus 3 ld~~d~~il~~L~~~~-~~s~~---ela~---~-lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~ 74 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDS-RLSMR---ELGR---K-IKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVK 74 (144)
T ss_dssp CCHHHHHHHHHHHHCS-CCCHH---HHHH---H-HTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEG
T ss_pred CCHHHHHHHHHHHHcC-CCCHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEEC
Confidence 3455668999998753 35666 6533 2 69999999999999999999974 577854 23 34455
Q ss_pred ch
Q psy2296 79 NK 80 (208)
Q Consensus 79 s~ 80 (208)
..
T Consensus 75 ~~ 76 (144)
T 2cfx_A 75 NA 76 (144)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 130
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=68.91 E-value=14 Score=27.33 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|||..+ -.+|.++... ...+.+ ||-.. .||+..+|--+|+.|++.|+|.....
T Consensus 45 ~~lt~~~--~~iL~~l~~~-~~~t~~---ela~~----l~is~~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 45 YGMAIPE--WRVITILALY-PGSSAS---EVSDR----TAMDKVAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp HCCCHHH--HHHHHHHHHS-TTCCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred cCCCHHH--HHHHHHHHhC-CCCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEeeecC
Confidence 3677665 4567777663 356777 77543 58999999999999999999987653
No 131
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=68.66 E-value=17 Score=26.65 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES 65 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~ 65 (208)
|+|..+ -.+|.+++... .-+.. ||-+. .|+++.+|--+|..|++.|+|..
T Consensus 38 ~lt~~~--~~iL~~l~~~~-~~t~~---eLa~~----l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 38 GLTIQQ--LAMINVIYSTP-GISVA---DLTKR----LIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TCCHHH--HHHHHHHHHST-TEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHH--HHHHHHHHHCC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEe
Confidence 666654 46677777654 35667 66554 48999999999999999999988
No 132
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=68.57 E-value=10 Score=27.80 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhc--cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc-ceeEeeccch
Q psy2296 11 EKRTGLLELFHEK--EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT-STYFWSFPNK 80 (208)
Q Consensus 11 EKr~~il~~f~~~--~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt-sN~YWsFps~ 80 (208)
+.--++|.++... ....+.. ||=. . -||++.+|..+++.|+..|+|.+.+ |. +-|.-+-|..
T Consensus 9 ~~al~iL~~la~~~~~~~~s~~---ela~---~-~~i~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~~~~ 73 (129)
T 2y75_A 9 RYGLTIMIELAKKHGEGPTSLK---SIAQ---T-NNLSEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGSEPD 73 (129)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHH---HHHH---H-TTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCGG
T ss_pred HHHHHHHHHHHhCCCCCcCCHH---HHHH---H-HCcCHHHHHHHHHHHHHCCceEecC-CCCCceEeCCCHH
Confidence 3445677777654 3567888 6633 2 5999999999999999999998876 63 4555555443
No 133
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=68.48 E-value=24 Score=32.65 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALEKSMV 115 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~ 115 (208)
..+..+...++.+++.++.+...+..+|...+.
T Consensus 40 ~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 40 IEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555666666666666666655544
No 134
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=67.05 E-value=8.3 Score=27.47 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=35.0
Q ss_pred HHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 14 TGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 14 ~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-.||..+.. ..-+.. ||-+..| ||++.+|-..|+.|.+.|+|.....+
T Consensus 17 ~~IL~~L~~--~~~~~~---eLa~~l~---~is~~tls~~L~~Le~~GlI~r~~~~ 64 (107)
T 2hzt_A 17 XVILXHLTH--GKKRTS---ELKRLMP---NITQKMLTQQLRELEADGVINRIVYN 64 (107)
T ss_dssp HHHHHHHTT--CCBCHH---HHHHHCT---TSCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHh--CCCCHH---HHHHHhc---CCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 345655542 234555 6665543 99999999999999999999987663
No 135
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=66.77 E-value=38 Score=25.39 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=35.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|++++.-..+++|.+||+- -...|.- +|...-||.||.+.. -|+.+++|+-|||+
T Consensus 4 M~r~~~~~~~~~r~~Il~a---A~~lf~~-------------~G~~~~s~~~Ia~~a---------gvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 4 MARTRSADYENIRDTIIER---AAAMFAR-------------QGYSETSIGDIARAC---------ECSKSRLYHYFDSK 58 (203)
T ss_dssp --------CTTHHHHHHHH---HHHHHHH-------------TCTTTSCHHHHHHHT---------TCCGGGGTTTCSCH
T ss_pred ccccchhhhhhHHHHHHHH---HHHHHHH-------------cCcccCCHHHHHHHh---------CCCcCeeeeeeCCH
Confidence 6665555667788888663 2233333 499999999987753 47778999999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 59 e~ 60 (203)
T 3ccy_A 59 EA 60 (203)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 136
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.64 E-value=33 Score=24.65 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
|+|.. .-.+|.+++....--+.+ ||-.. .||+..+|-.+|+.|++.|+|.....
T Consensus 32 ~l~~~--~~~iL~~l~~~~~~~~~~---~la~~----l~i~~~~vs~~l~~Le~~glv~r~~~ 85 (147)
T 2hr3_A 32 PVQFS--QLVVLGAIDRLGGDVTPS---ELAAA----ERMRSSNLAALLRELERGGLIVRHAD 85 (147)
T ss_dssp HHHHH--HHHHHHHHHHTTSCBCHH---HHHHH----TTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred CCCHH--HHHHHHHHHHcCCCCCHH---HHHHH----hCCChhhHHHHHHHHHHCCCEeeCCC
Confidence 44443 356777777633446777 77654 59999999999999999999987644
No 137
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.39 E-value=32 Score=24.43 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|+|..+ -.+|.++.... .-+.. ||-.. -||+..+|--+|+.|++.|+|.....
T Consensus 32 ~~lt~~~--~~iL~~l~~~~-~~t~~---ela~~----l~~s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 32 HGLTEQQ--WRVIRILRQQG-EMESY---QLANQ----ACILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp HTCCHHH--HHHHHHHHHHC-SEEHH---HHHHH----TTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCHHH--HHHHHHHHHcC-CCCHH---HHHHH----HCCCHhHHHHHHHHHHHCCCEEeecC
Confidence 3666653 45677776644 35777 77543 59999999999999999999987654
No 138
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=65.76 E-value=5.5 Score=35.44 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=40.2
Q ss_pred HHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 15 GLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 15 ~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
++++.+.+.. +++.+ ++.+. .|++..|+.-.|+.||+.|++..-+.|-+ -+|.+|.
T Consensus 301 ~ll~~l~~~p-~~t~~---~~~~~----~~~S~~TA~r~L~~L~e~GiL~~~~~gR~-~~y~~~~ 356 (373)
T 3eqx_A 301 ELVQVIFEQP-YCRIQ---NLVES----GLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHPK 356 (373)
T ss_dssp HHHHHHHHCS-EEEHH---HHHHT----SSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECHH
T ss_pred HHHHHHHHCC-CccHH---HHHHH----hCcCHHHHHHHHHHHHHCCcEEEeCCCCc-eEeehHH
Confidence 4566665543 56777 76654 59999999999999999999987777755 4567763
No 139
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.71 E-value=87 Score=35.69 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALEK 112 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~ 112 (208)
...+......+++++....+++..++.+++
T Consensus 1972 e~~k~~v~~~~~~~~~~~~ei~~~k~~~e~ 2001 (3245)
T 3vkg_A 1972 EIKQKDARELQVQLDVRNKEIAVQKVKAYA 2001 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544443
No 140
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=65.19 E-value=1.3 Score=41.86 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeE
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYF 74 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~Y 74 (208)
+|+.+..-+..|++++.+.... +-+ |+-.+ +|+++.++.-+|..||++|+|...-.|.+..|
T Consensus 510 ~~~~~~~~~~~I~~~l~~~g~i-t~~---di~~l----~~ls~~qa~~~L~~Lv~~G~l~~~G~gr~t~Y 571 (583)
T 3lmm_A 510 LSTDQAELTNAAMLWLSEVGDL-ATS---DLMAM----CGVSRGTAKACVDGLVDEERVVAVGGGRSRRY 571 (583)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccCChhHHHHHHHHHHHHcCCc-CHH---HHHHH----HCCCHHHHHHHHHHHHHCCcEEEeCCCCceEE
Confidence 3455555567789999886553 666 66554 78999999999999999999977767766666
No 141
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=64.95 E-value=22 Score=22.07 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=26.4
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 106 NNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKY 147 (208)
Q Consensus 106 l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 147 (208)
++.+++..+...-..++-..+-.+++.|.+.+..|+..|+.+
T Consensus 5 lkselqalkkegfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 5 LKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444433334566777778888888888887777655
No 142
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=64.83 E-value=35 Score=25.56 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
|||..+ -.+|.++.... --+.+ ||-.. .||+..+|--+|+.|++.|+|.....
T Consensus 42 ~lt~~~--~~iL~~L~~~~-~~t~~---eLa~~----l~is~~tvs~~l~~Le~~GlV~r~~~ 94 (168)
T 2nyx_A 42 NITIPQ--FRTLVILSNHG-PINLA---TLATL----LGVQPSATGRMVDRLVGAELIDRLPH 94 (168)
T ss_dssp SCCHHH--HHHHHHHHHHC-SEEHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHH--HHHHHHHHHcC-CCCHH---HHHHH----hCCCHHHHHHHHHHHHHCCCEEeccC
Confidence 666653 45677776644 45677 76543 59999999999999999999988655
No 143
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=64.67 E-value=2.1 Score=38.60 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=30.9
Q ss_pred hHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 49 SVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 49 ~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
.+.++++.||.+|+|..+|+.+.|+=|.|||.
T Consensus 240 ~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~ 271 (384)
T 2efj_A 240 LLEMSINDLVIEGHLEEEKLDSFNVPIYAPST 271 (384)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCH
T ss_pred HHHHHHHHHHHhCCcchhhhcccCCcccCCCH
Confidence 89999999999999999999999999999996
No 144
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=63.99 E-value=38 Score=24.35 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 84 RVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
.++.++..|+.+.+....+...++..+..+ ...+..+-.++..|+..+..+..++..+..
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~------e~~~~~~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQA------EDRCKQLEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444 234566777888899999988888888776
No 145
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=63.98 E-value=12 Score=27.86 Aligned_cols=54 Identities=15% Similarity=0.312 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc-------cccccc
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES-------EKIGTS 71 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~-------EKiGts 71 (208)
++.+.+||..++... --+.. ||-+. -|+++.+|-..|+.|.+.|+|.. .+.|-.
T Consensus 2 d~~~~~il~~L~~~~-~~~~~---ela~~----lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~ 62 (150)
T 2pn6_A 2 DEIDLRILKILQYNA-KYSLD---EIARE----IRIPKATLSYRIKKLEKDGVIKGYYAYINPASLNLD 62 (150)
T ss_dssp CHHHHHHHHHHTTCT-TSCHH---HHHHH----HTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCC
T ss_pred ChHHHHHHHHHHHcC-CCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCc
Confidence 356778999988654 35666 65433 69999999999999999999975 678854
No 146
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.93 E-value=29 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy2296 87 CKLEKITAEIEDVTKELAQNNEALEKSMVGR 117 (208)
Q Consensus 87 ~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r 117 (208)
.++..+..+-..++.++..++..++..+..|
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q 43 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAER 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777777777766533
No 147
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=63.80 E-value=37 Score=24.25 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=38.8
Q ss_pred HHHHHHhhhccchhh--hcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 14 TGLLELFHEKEEFFQ--LKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 14 ~~il~~f~~~~~~f~--lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
-.||..+.. ...+ .. ||-+..| ||++.+|-..|..|.++|+|..... -..++++-..
T Consensus 30 l~IL~~L~~--g~~~~~~~---eL~~~l~---gis~~~ls~~L~~Le~~GlV~r~~~--r~~~y~LT~~ 88 (111)
T 3df8_A 30 MLIISVLGN--GSTRQNFN---DIRSSIP---GISSTILSRRIKDLIDSGLVERRSG--QITTYALTEK 88 (111)
T ss_dssp HHHHHHHTS--SSSCBCHH---HHHHTST---TCCHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHH
T ss_pred HHHHHHHhc--CCCCCCHH---HHHHHcc---CCCHHHHHHHHHHHHHCCCEEEeec--CcEEEEECcc
Confidence 345555553 2223 56 6665443 8999999999999999999998766 3444455443
No 148
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=63.78 E-value=6.5 Score=32.55 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
+.+++.=+|--+||+.|.......++. ||-.. .|++.-||--+|+.|++.|+|..+
T Consensus 7 ~~~v~s~~r~l~iL~~l~~~~~~~~~~---eia~~----~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 7 RDYIQSIERGFAVLLAFDAQRPNPTLA---ELATE----AGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp CCCCHHHHHHHHHHHTCSSSCSSCBHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEeC
Confidence 356777789999999998877788999 87653 599999999999999999999886
No 149
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=63.49 E-value=5.1 Score=33.41 Aligned_cols=56 Identities=13% Similarity=0.283 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
+.+++.=+|--+||++|.....-.++. ||-.. .|++.-||--+|+.|++.|+|..+
T Consensus 14 ~~~v~sl~r~l~iL~~l~~~~~~~~~~---eia~~----~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 14 PDYVQSLARGLAVIRCFDHRNQRRTLS---DVARA----TDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp --CCHHHHHHHHHHHTCCSSCSSEEHH---HHHHH----HTCCHHHHHHHHHHHHHHTSEEES
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEec
Confidence 456666778889999998777778999 87543 699999999999999999999887
No 150
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=63.47 E-value=8.5 Score=28.67 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHhh--h-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 4 KKGLSVEEKRTGLLELFH--E-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~--~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
+-|||..|=. -++-++. + ...|-+.. + +|.. .|+++.+|..+|+.|++.|+|..+.
T Consensus 27 ~lgLt~~e~~-vll~L~~~~~~~~~~ps~~---~---LA~~-l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 27 QLGLGEGELV-LLLHMQSFFEEGVLFPTPA---E---LAER-MTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TTTCCHHHHH-HHHHHHHHHTTTCSSCCHH---H---HHHT-SSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HcCCCHHHHH-HHHHHHHHHhcCCCCCCHH---H---HHHH-HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3488888776 3333332 2 23444555 4 4444 7999999999999999999998753
No 151
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=63.46 E-value=12 Score=23.53 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccc-cCCccchHHHHHHHhhhcCcccccccccceeEe
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKE-KGIISQSVKEILQSLVDDGLVESEKIGTSTYFW 75 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~-~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YW 75 (208)
..+.+..|+.++ ..+.+.+.. ||-....+. .||+..||--.|. +-|+|.+ ..|...+++
T Consensus 3 ~~~R~~~i~~ll-~~~~~~t~~---el~~~l~~~~~~vs~~Tv~R~L~---~lg~v~~-~~~~~~~~Y 62 (64)
T 2p5k_A 3 KGQRHIKIREII-TSNEIETQD---ELVDMLKQDGYKVTQATVSRDIK---ELHLVKV-PTNNGSYKY 62 (64)
T ss_dssp HHHHHHHHHHHH-HHSCCCSHH---HHHHHHHHTTCCCCHHHHHHHHH---HHTCEEE-EETTTEEEE
T ss_pred HHHHHHHHHHHH-HcCCCCCHH---HHHHHHHHhCCCcCHHHHHHHHH---HcCCEEE-ecCCCceee
Confidence 344555566665 456789999 998777653 3889999998888 4588843 344444433
No 152
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=63.44 E-value=12 Score=29.23 Aligned_cols=64 Identities=17% Similarity=0.417 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc-------cccccc--eeE-eecc
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES-------EKIGTS--TYF-WSFP 78 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~-------EKiGts--N~Y-WsFp 78 (208)
+++...+||..++... --+.. ||=+ . .|+++.+|-.-|+.|.+.|+|.. .+.|-. .|+ |.++
T Consensus 25 ld~~d~~IL~~L~~~~-~~s~~---eLA~---~-lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~ 96 (171)
T 2e1c_A 25 LDEIDKKIIKILQNDG-KAPLR---EISK---I-TGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVK 96 (171)
T ss_dssp CCHHHHHHHHHHHHCT-TCCHH---HHHH---H-HTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHcC-CCCHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEEC
Confidence 4567778999998754 35566 6533 3 69999999999999999999975 788964 233 4666
Q ss_pred ch
Q psy2296 79 NK 80 (208)
Q Consensus 79 s~ 80 (208)
..
T Consensus 97 ~~ 98 (171)
T 2e1c_A 97 AG 98 (171)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 153
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=63.13 E-value=21 Score=32.22 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 80 KASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 80 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
+....+......+..+++.++.+...+..+|.. ...+++..++++..+|+.+++.+.+++..+.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK-----APPEEKEALIARGKALGEEAKRLEEALREKE 91 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666655543 1225667777878777777777777766554
No 154
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=62.94 E-value=3.3 Score=30.21 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=26.5
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
-||+..+|.+.++.|.++|+|.... | .-+|=+-++
T Consensus 43 ~~vSr~tvr~al~~L~~~Gli~~~~-~-~G~~V~~~~ 77 (113)
T 3tqn_A 43 YQINPLTVSKAYQSLLDDNVIEKRR-G-LGMLVKAGA 77 (113)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEET-T-TEEEECTTH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEec-C-CeEEEeCCc
Confidence 5999999999999999999986542 2 234545444
No 155
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.92 E-value=42 Score=24.54 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
|||.. .-.||.++.... --+.. ||-.. .||+..+|--+|+.|++.|+|.....
T Consensus 41 ~lt~~--~~~iL~~l~~~~-~~t~~---ela~~----l~is~~tvs~~l~~Le~~Gli~r~~~ 93 (154)
T 2eth_A 41 DMKTT--ELYAFLYVALFG-PKKMK---EIAEF----LSTTKSNVTNVVDSLEKRGLVVREMD 93 (154)
T ss_dssp HSBHH--HHHHHHHHHHHC-CBCHH---HHHHH----TTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHH--HHHHHHHHHHcC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 55554 345677776644 45677 77553 58999999999999999999998764
No 156
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=62.86 E-value=19 Score=26.12 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
+-|+|..+ -.+|.+++... --+.+ ||-.. .|+.+.+|--+|+.|++.|+|.....
T Consensus 31 ~~glt~~q--~~vL~~l~~~~-~~t~~---eLa~~----l~~~~~tvs~~l~~L~~~Glv~r~~~ 85 (140)
T 3hsr_A 31 EYDLTYTG--YIVLMAIENDE-KLNIK---KLGER----VFLDSGTLTPLLKKLEKKDYVVRTRE 85 (140)
T ss_dssp GGTCCHHH--HHHHHHSCTTC-EEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HcCCCHHH--HHHHHHHHHcC-CcCHH---HHHHH----HCCChhhHHHHHHHHHHCCCeEecCC
Confidence 35788765 67788887643 46777 76554 58999999999999999999998754
No 157
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=62.71 E-value=14 Score=21.27 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 90 EKITAEIEDVTKELAQNNEALEKSM 114 (208)
Q Consensus 90 ~~l~~~i~~~~~~i~~l~~~ie~~~ 114 (208)
..|.++|+.++++|..|+=+|...+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
No 158
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=62.62 E-value=52 Score=25.52 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2296 155 LKLIENTAQRAKEAANRWTDNLFSLKSWCK 184 (208)
Q Consensus 155 i~~~~~~~~~~k~aanrwTDNI~~l~~~~~ 184 (208)
+..+...+..+....+++...+..+..++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 282 (284)
T 1c1g_A 253 IDDLEDELYAQKLKYKAISEELDHALNDMT 282 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555555566666666665554
No 159
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=62.53 E-value=12 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=24.0
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTS 71 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGts 71 (208)
-||+..+|.+.++.|..+|+|.... |.+
T Consensus 45 ~~vSr~tvr~Al~~L~~~Gli~~~~-g~G 72 (126)
T 3by6_A 45 EKINPNTVAKAYKELEAQKVIRTIP-GKG 72 (126)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEET-TTE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEec-CCe
Confidence 6999999999999999999997642 444
No 160
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=62.48 E-value=3.5 Score=30.78 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=22.3
Q ss_pred cccCCccchHHHHHHHhhhcCccccc
Q psy2296 41 KEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 41 K~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
..-||+..+|.+.++.|.++|+|...
T Consensus 43 ~~~~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 43 SIVEVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp TCC-CCSGGGHHHHHHHHTTTSEEEE
T ss_pred HHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 33799999999999999999999765
No 161
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=61.49 E-value=4.1 Score=31.27 Aligned_cols=57 Identities=9% Similarity=0.204 Sum_probs=38.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|+++..-..+++|.+||+- ....|.-+ |....||.||-... -|+.+.+|+-|||+
T Consensus 4 m~~~~~~~~~~~r~~Il~a---A~~lf~~~-------------G~~~~s~~~IA~~a---------gvsk~tlY~yF~sK 58 (199)
T 3crj_A 4 MAGPSDRTFSDQTEEIMQA---TYRALREH-------------GYADLTIQRIADEY---------GKSTAAVHYYYDTK 58 (199)
T ss_dssp ------CCHHHHHHHHHHH---HHHHHHHH-------------TTTTCCHHHHHHHH---------TSCHHHHHTTCSSH
T ss_pred cCCCccccchhHHHHHHHH---HHHHHHHc-------------CcccCCHHHHHHHh---------CCChhHHhhhcCCH
Confidence 5555666778888887653 33444444 99999999987753 46778999999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 59 e~ 60 (199)
T 3crj_A 59 DD 60 (199)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 162
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=61.19 E-value=38 Score=24.00 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
+-|+|..+ -.+|.++.... .-+.. ||- ...|++..+|--+|+.|+..|+|.....+
T Consensus 29 ~~~lt~~~--~~iL~~l~~~~-~~~~~---~la----~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 29 PLDITAAQ--FKVLCSIRCAA-CITPV---ELK----KVLSVDLGALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp TTTSCHHH--HHHHHHHHHHS-SBCHH---HHH----HHHTCCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred hcCCCHHH--HHHHHHHHhcC-CCCHH---HHH----HHHCCChHHHHHHHHHHHHCCCEEecCCc
Confidence 45788765 45677776543 34677 765 23699999999999999999999986543
No 163
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=60.99 E-value=12 Score=25.80 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=43.7
Q ss_pred HHHHHHHhhhccchhhhcchHHHHhhcccccCCccch-HHHHHHHhhhcCcccccccccceeEeeccchhhHHHH
Q psy2296 13 RTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQS-VKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVD 86 (208)
Q Consensus 13 r~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~-VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~ 86 (208)
.-.+|.+++....--+.+ ||-+. .||++.+ |--+|+.|++.|+|..+.-+--..+.+ ........-
T Consensus 17 ~l~~L~~l~~~~~~~t~~---eLa~~----l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~-LT~~G~~~~ 83 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLA---EIVKA----SGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLK-LTEKGRRLA 83 (95)
T ss_dssp HHHHHHHHHHTTCCCCHH---HHHHH----HCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEE-ECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHH---HHHHH----HCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEE-ECHhHHHHH
Confidence 345566666665457888 77543 5899999 999999999999999443333334444 444444433
No 164
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=60.92 E-value=2.6 Score=32.25 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=38.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|+ ++++..+++|.+||+- ....|.- .|+...||.||-... -|+.+++|+-|||+
T Consensus 2 M~-~~~~~~~~~r~~Il~a---A~~lf~~-------------~G~~~~s~~~IA~~a---------gvs~~t~Y~~F~sK 55 (212)
T 2ras_A 2 MA-SSGTEHDAMRARLVDV---AQAIVEE-------------RGGAGLTLSELAARA---------GISQANLSRYFETR 55 (212)
T ss_dssp -----CHHHHHHHHHHHHH---HHHHHHH-------------HTSSCCCHHHHHHHH---------TSCHHHHTTTCSSH
T ss_pred CC-CCCccchHHHHHHHHH---HHHHHHH-------------hCcccCcHHHHHHHh---------CCCHHHHHHHcCCH
Confidence 66 4567778888888753 2333433 499999999987754 57778899999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 56 ~~ 57 (212)
T 2ras_A 56 ED 57 (212)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 165
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=60.78 E-value=43 Score=25.43 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=47.6
Q ss_pred HHHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc----ccceeEeeccchhhHH
Q psy2296 13 RTGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI----GTSTYFWSFPNKASDR 84 (208)
Q Consensus 13 r~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi----GtsN~YWsFps~~~~~ 84 (208)
+-.||.++.+ ...+|.|. .+|+....-..+|++-+|=-+|..|.++|+|..... |--..|++.-......
T Consensus 43 ~~~IL~~L~~~~~~gyeI~--~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~ 117 (145)
T 1xma_A 43 DTIILSLLIEGDSYGYEIS--KNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKY 117 (145)
T ss_dssp HHHHHHHHHHCCEEHHHHH--HHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH--HHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHH
Confidence 3456676654 45677653 156655444357999999999999999999998765 3345566777665544
No 166
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=60.69 E-value=2.9 Score=32.10 Aligned_cols=57 Identities=23% Similarity=0.484 Sum_probs=37.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|+++.....+++|.+||+ .-...|.-+ |....||.||.... -|+.+++|+-|||+
T Consensus 1 M~~~~~~~~~~~r~~Il~---aA~~lf~~~-------------G~~~~s~~~IA~~a---------GvskgtlY~~F~sK 55 (210)
T 2xdn_A 1 MVRRTKEEAQETRAQIIE---AAERAFYKR-------------GVARTTLADIAELA---------GVTRGAIYWHFNNK 55 (210)
T ss_dssp ----CCHHHHHHHHHHHH---HHHHHHHHH-------------CSTTCCHHHHHHHH---------TCCTTHHHHHCSSH
T ss_pred CCCchHHHHHHHHHHHHH---HHHHHHHHc-------------CcccCcHHHHHHHH---------CCChHHHHHHhCCH
Confidence 665544456677777754 333444444 99999999987754 47788999999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 56 e~ 57 (210)
T 2xdn_A 56 AE 57 (210)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 167
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=60.36 E-value=9.6 Score=27.47 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=24.6
Q ss_pred cCCccchHHHHHHHhhhcCcccccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-||+..+|.+.|+.|.++|+|....=|
T Consensus 53 lgVSr~tVr~al~~L~~~GlI~~~~gG 79 (102)
T 2b0l_A 53 VGITRSVIVNALRKLESAGVIESRSLG 79 (102)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEeCC
Confidence 699999999999999999999887744
No 168
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=59.61 E-value=47 Score=23.98 Aligned_cols=59 Identities=8% Similarity=0.218 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
++.++..|+.+.+....+...++..+..+ ...+...-.++..|+..+..+..+|+.+..
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~------e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAA------EERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554444 235667778899999999999999988875
No 169
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=59.48 E-value=12 Score=28.11 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccc-------ccccccc
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVE-------SEKIGTS 71 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~-------~EKiGts 71 (208)
+++...+||..++... .-+.. ||-+. .|+++.+|-..|+.|.+.|+|. -.+.|-.
T Consensus 5 ld~~~~~iL~~L~~~~-~~s~~---ela~~----lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~ 66 (150)
T 2w25_A 5 LDDIDRILVRELAADG-RATLS---ELATR----AGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHL 66 (150)
T ss_dssp CCHHHHHHHHHHHHCT-TCCHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCC
T ss_pred cCHHHHHHHHHHHHcC-CCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEEEeccChhHcccc
Confidence 4456678999997653 46777 66443 6999999999999999999994 6678864
No 170
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=59.43 E-value=47 Score=24.01 Aligned_cols=70 Identities=13% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc----ccceeEeeccchhhHHHH
Q psy2296 15 GLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI----GTSTYFWSFPNKASDRVD 86 (208)
Q Consensus 15 ~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi----GtsN~YWsFps~~~~~~~ 86 (208)
-||.++.+ ....|.|. .+|+......-+|++-+|=-+|..|.++|+|..... |-..-|++.-......+.
T Consensus 16 ~IL~~L~~~~~~Gyei~--~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 90 (116)
T 3f8b_A 16 ILLNVLKQGDNYVYGII--KQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMR 90 (116)
T ss_dssp HHHHHHHHCCBCHHHHH--HHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHH--HHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHH
Confidence 35666654 44566664 367766554468999999999999999999998753 445667777776654433
No 171
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=59.37 E-value=48 Score=24.04 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc-----ccceeEeeccch
Q psy2296 7 LSVEEKRTGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI-----GTSTYFWSFPNK 80 (208)
Q Consensus 7 lS~eEKr~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi-----GtsN~YWsFps~ 80 (208)
|+.+=.-.-||.++.+ ....|.|. .+|+...+ .-+|++-+|=-+|..|.++|+|..... |-..-|++.-..
T Consensus 18 l~~~l~~~~IL~lL~~~~~~Gyei~--~~l~~~~~-~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~ 94 (115)
T 2dql_A 18 LCQEVAICYILYVLLQGESYGTELI--QQLETEHP-TYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPE 94 (115)
T ss_dssp CCHHHHHHHHHHHHTTSCBCHHHHH--HHHHHHCT-TEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGG
T ss_pred hhhhHHHHHHHHHHHhCCCCHHHHH--HHHHHHcC-CCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHH
Confidence 5555455557777775 55677653 27776653 358999999999999999999998753 334577788777
Q ss_pred hhHHHHHHHHH
Q psy2296 81 ASDRVDCKLEK 91 (208)
Q Consensus 81 ~~~~~~~~~~~ 91 (208)
....+...+..
T Consensus 95 G~~~l~~~~~~ 105 (115)
T 2dql_A 95 WQHQAEDLARL 105 (115)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76555444433
No 172
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=59.20 E-value=12 Score=27.95 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=38.2
Q ss_pred HHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc--ceeEeeccch
Q psy2296 15 GLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT--STYFWSFPNK 80 (208)
Q Consensus 15 ~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt--sN~YWsFps~ 80 (208)
.||..+.. ..-+.. ||-+..+ ||++.+|-..|..|.++|+|.....+. -.+|++.-..
T Consensus 39 ~IL~~L~~--g~~~~~---eLa~~l~---gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~ 98 (131)
T 1yyv_A 39 LILVALRD--GTHRFS---DLRRXMG---GVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPL 98 (131)
T ss_dssp HHHHHGGG--CCEEHH---HHHHHST---TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHH
T ss_pred HHHHHHHc--CCCCHH---HHHHHhc---cCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECcc
Confidence 45555542 233445 6655442 899999999999999999999877642 2344455443
No 173
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=59.05 E-value=20 Score=27.15 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc-------cccccc--e-eEeec
Q psy2296 8 SVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES-------EKIGTS--T-YFWSF 77 (208)
Q Consensus 8 S~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~-------EKiGts--N-~YWsF 77 (208)
.+++...+||.+++.... -+.+ ||-+. .|+++.+|-..|+.|.+.|+|.. .+.|-. . +.|..
T Consensus 7 ~ld~~~~~il~~L~~~~~-~s~~---ela~~----lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~ 78 (162)
T 2p5v_A 7 TLDKTDIKILQVLQENGR-LTNV---ELSER----VALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSI 78 (162)
T ss_dssp CCCHHHHHHHHHHHHCTT-CCHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHcCC-CCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEE
Confidence 356677799999987654 4777 76442 69999999999999999999974 577854 2 23455
Q ss_pred cch
Q psy2296 78 PNK 80 (208)
Q Consensus 78 ps~ 80 (208)
+..
T Consensus 79 ~~~ 81 (162)
T 2p5v_A 79 RKA 81 (162)
T ss_dssp CSS
T ss_pred cCC
Confidence 554
No 174
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=59.00 E-value=4.2 Score=33.77 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=26.0
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeE
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYF 74 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~Y 74 (208)
-||+.+||...|+.|+++|+|.. -|.++|-
T Consensus 46 ~~vSr~tvr~Al~~L~~~G~i~~--~g~Gt~V 75 (248)
T 3f8m_A 46 FEVARETVRQALRELLIDGRVER--RGRTTVV 75 (248)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEE--ETTEEEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEe--CCCEEEE
Confidence 69999999999999999999999 5555544
No 175
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=58.94 E-value=11 Score=34.19 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 80 KASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKY 147 (208)
Q Consensus 80 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 147 (208)
+....+......++.+++.++.+...+..+|..++...+ ++..++++..+|+.+++.+.+++..+
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGK---DTTEIQNRVKELKEEIDRLEEELRKV 94 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCS---CTTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777777777777766544322 23344444555555554444444433
No 176
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=58.53 E-value=12 Score=27.06 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
.-|+|..+ -.+|.+++... .-+.. ||-.. .||+..+|--+|..|++.|+|.....
T Consensus 35 ~~~l~~~~--~~iL~~l~~~~-~~~~~---~la~~----l~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 35 KLNITYPQ--YLALLLLWEHE-TLTVK---KMGEQ----LYLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp TTCCCHHH--HHHHHHHHHHS-EEEHH---HHHHT----TTCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred HcCCCHHH--HHHHHHHHHCC-CCCHH---HHHHH----HCCCcCcHHHHHHHHHHCCCEEeccC
Confidence 35788764 46777777654 45777 77654 59999999999999999999988765
No 177
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.42 E-value=1e+02 Score=27.41 Aligned_cols=11 Identities=0% Similarity=0.184 Sum_probs=6.9
Q ss_pred eeEeeccchhh
Q psy2296 72 TYFWSFPNKAS 82 (208)
Q Consensus 72 N~YWsFps~~~ 82 (208)
-|||+-..+..
T Consensus 346 gyC~s~~~~~~ 356 (487)
T 3oja_A 346 EQYRTVIDQVT 356 (487)
T ss_dssp HHTCCCCCHHH
T ss_pred HHhcChHHHHH
Confidence 37787666544
No 178
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=57.55 E-value=3.1 Score=32.01 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=34.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|++++.-..++.|.+||+-. ..+... +|+..-||.||-... -|+.+.+||-|||+
T Consensus 2 M~~~~~~~~~~tr~~Il~aA---------------~~l~~e-~G~~~~s~~~IA~~a---------gvs~~t~Y~hF~~K 56 (198)
T 3cjd_A 2 MAGKVEARKAALREKLIDLA---------------EAQIEA-EGLASLRARELARQA---------DCAVGAIYTHFQDL 56 (198)
T ss_dssp --------CHHHHHHHHHHH---------------HHHHHH-HCGGGCCHHHHHHHH---------TSCHHHHHHHCSSH
T ss_pred CCcchhhhHHHHHHHHHHHH---------------HHHHHh-CChhhcCHHHHHHHh---------CCCccHHHHHhCCH
Confidence 66555555566777776532 222332 599999999987754 46788999999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 57 e~ 58 (198)
T 3cjd_A 57 NA 58 (198)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 179
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=57.49 E-value=17 Score=27.16 Aligned_cols=55 Identities=16% Similarity=0.385 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc-------cccccc
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES-------EKIGTS 71 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~-------EKiGts 71 (208)
+++...+||..++... .-+.. ||-+ . .|+++.+|-..|+.|.+.|+|.. .+.|-.
T Consensus 6 ld~~d~~il~~L~~~~-~~s~~---ela~---~-lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~ 67 (152)
T 2cg4_A 6 IDNLDRGILEALMGNA-RTAYA---ELAK---Q-FGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYD 67 (152)
T ss_dssp CCHHHHHHHHHHHHCT-TSCHH---HHHH---H-HTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCC
T ss_pred cCHHHHHHHHHHHHcC-CCCHH---HHHH---H-HCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCe
Confidence 4455668999998764 35666 6543 3 69999999999999999999974 678864
No 180
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=57.49 E-value=47 Score=23.39 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
.-|+|..+ -.+|.++.... .-+.+ ||-.. .|++..+|--+|+.|++.|+|.....
T Consensus 28 ~~~l~~~~--~~iL~~l~~~~-~~~~~---ela~~----l~~~~~tvs~~l~~L~~~gli~r~~~ 82 (139)
T 3bja_A 28 QYDISYVQ--FGVIQVLAKSG-KVSMS---KLIEN----MGCVPSNMTTMIQRMKRDGYVMTEKN 82 (139)
T ss_dssp GGTCCHHH--HHHHHHHHHSC-SEEHH---HHHHH----CSSCCTTHHHHHHHHHHTTSEEEEEC
T ss_pred hcCCCHHH--HHHHHHHHHcC-CcCHH---HHHHH----HCCChhHHHHHHHHHHHCCCeeeccC
Confidence 35777654 56777776644 45777 77543 59999999999999999999987654
No 181
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=57.38 E-value=55 Score=24.14 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|||..+ -.+|.++.... --+.+ ||-.. .||.+.+|--+|..|++.|+|.....
T Consensus 42 ~glt~~q--~~iL~~l~~~~-~~t~~---eLa~~----l~~~~~tvs~~l~~Le~~Glv~r~~~ 95 (162)
T 3k0l_A 42 LEISLPQ--FTALSVLAAKP-NLSNA---KLAER----SFIKPQSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp TTCCHHH--HHHHHHHHHCT-TCCHH---HHHHH----HTSCGGGHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCHHH--HHHHHHHHHCC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCcCeEecCC
Confidence 5788765 67777777654 46777 77443 59999999999999999999997765
No 182
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=57.27 E-value=21 Score=26.03 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 82 SDRVDCKLEKITAEIEDVT---KELAQNNEALEKSMVGR-GDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~---~~i~~l~~~ie~~~~~r-~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
...++..+++|.+++...+ ..+.-|+..++--+..- .+-..|+.+-.+.++|..++..|+.++..+.
T Consensus 18 L~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 18 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566665555555 22233333332221100 0013567777777777777777777766554
No 183
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=57.25 E-value=15 Score=26.04 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=31.7
Q ss_pred HHHhhcccccCCccchHHHHHHHhhhcCccccccccc--ceeEeeccchh
Q psy2296 34 ELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT--STYFWSFPNKA 81 (208)
Q Consensus 34 ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt--sN~YWsFps~~ 81 (208)
||-+..+ ||++.+|-..|..|.++|+|.....++ -..|++.-..+
T Consensus 43 eL~~~l~---gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 89 (107)
T 2fsw_A 43 ELKRAIP---GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLG 89 (107)
T ss_dssp HHHHHST---TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred HHHHHcc---cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccH
Confidence 5544332 799999999999999999999876643 23444544443
No 184
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.13 E-value=1e+02 Score=28.98 Aligned_cols=98 Identities=13% Similarity=0.255 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCC---hhHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy2296 84 RVDCKLEKITAEIEDVTKELAQNNEALEKSMVG-RGDS---KNREDFLQEVG-NISKELELINKELEKYKNNDPDTLKLI 158 (208)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~-r~~~---~eR~~ll~~l~-~L~~~~~~l~~el~~~~~~Dp~~i~~~ 158 (208)
-+.+.|++|..+++++++...+...-+...... |..- .+-.....++. +|+..+.-|+.++..-- ..|..|
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl----snIrvL 136 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV----QHIQLL 136 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 345556666666666655555544444333321 2111 12233444554 77777777777776543 577888
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHh
Q psy2296 159 ENTAQRAKEAANRWTDNLFSLKSWCKN 185 (208)
Q Consensus 159 ~~~~~~~k~aanrwTDNI~~l~~~~~~ 185 (208)
+..+...+..+-|.-=.|.+-+.||+-
T Consensus 137 QsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 137 QKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888888888888889999999864
No 185
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=56.87 E-value=21 Score=26.24 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 3 KKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 3 kkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
+++.-..+++|.+|++- ..+.|.- .|+...||.||-... -|+.+++|+-|||+..
T Consensus 4 ~~~~~~~~~~r~~Il~a---A~~lf~~-------------~G~~~~t~~~IA~~a---------gvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 4 AEQPYHHGSLRRVLLAR---AESTLEK-------------DGVDGLSLRQLAREA---------GVSHAAPSKHFRDRQA 58 (199)
T ss_dssp CCCTTCCCCHHHHHHHH---HHHHHHH-------------HCGGGCCHHHHHHHT---------C-----CCCSSSSHHH
T ss_pred CCCchHHHHHHHHHHHH---HHHHHHh-------------cChhhhhHHHHHHHh---------CCChHHHHHHhCCHHH
Confidence 34566667788887653 3334433 499999999987654 5788899999999764
Q ss_pred H
Q psy2296 83 D 83 (208)
Q Consensus 83 ~ 83 (208)
-
T Consensus 59 L 59 (199)
T 3on2_A 59 L 59 (199)
T ss_dssp H
T ss_pred H
Confidence 3
No 186
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.78 E-value=1.1e+02 Score=27.58 Aligned_cols=34 Identities=9% Similarity=0.199 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 82 SDRVDCKLEKITAEIEDVTKELAQNNEALEKSMV 115 (208)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~ 115 (208)
...+...+..+++++...++.++..+..+++.+.
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445556666666666666666666666665543
No 187
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=56.61 E-value=26 Score=27.10 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc-----ccceeEeec
Q psy2296 4 KKGLSVEEKRTGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI-----GTSTYFWSF 77 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi-----GtsN~YWsF 77 (208)
++.++.+.-.--||.++.+ ...+|.|. .+|+...+ .-+|+.-+|=-+|..|.++|+|..... |-..-|++.
T Consensus 37 ~~~l~~~~~~~~IL~lL~~~p~~GYeI~--k~l~~~~~-~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~L 113 (148)
T 2zfw_A 37 PHYLSKELAVCYVLAVLRHEDSYGTELI--QHLETHWP-NYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQL 113 (148)
T ss_dssp CEECCHHHHHHHHHHHHTTCCEEHHHHH--HHHHHHCT-TEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEE
T ss_pred ccccchHHHHHHHHHHHHhCCCcHHHHH--HHHHHHcC-CCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEE
Confidence 4556666555567888754 56677763 17777663 257999999999999999999998753 334567787
Q ss_pred cchhhHHHHHHH
Q psy2296 78 PNKASDRVDCKL 89 (208)
Q Consensus 78 ps~~~~~~~~~~ 89 (208)
-......+...+
T Consensus 114 T~~Gr~~l~~~~ 125 (148)
T 2zfw_A 114 AQANDDRSRDLA 125 (148)
T ss_dssp SSSSCSTTHHHH
T ss_pred CHHHHHHHHHHH
Confidence 776665544433
No 188
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=56.58 E-value=57 Score=24.04 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
|+|..+ -.+|.+++... --+.. ||-.. .||...+|--+|..|++.|+|.....
T Consensus 50 glt~~q--~~vL~~l~~~~-~~t~~---eLa~~----l~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 50 KLPTPK--LRLLSSLSAYG-ELTVG---QLATL----GVMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp TCCHHH--HHHHHHHHHHS-EEEHH---HHHHH----TTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred CCCHHH--HHHHHHHHhCC-CCCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 666653 56777776654 45677 77542 69999999999999999999998765
No 189
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=56.56 E-value=38 Score=21.96 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhh
Q psy2296 130 VGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWT 173 (208)
Q Consensus 130 l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aanrwT 173 (208)
+.+|..++..|..++..++. .+..++.++..+++.|.|-.
T Consensus 6 i~~Lss~V~~L~~kVdqLss----dV~al~~~v~~ak~eA~RAN 45 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASN----DANAARSDAQAAKDDAARAN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554 44455567777777776654
No 190
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=56.13 E-value=3.9 Score=36.54 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=30.3
Q ss_pred chHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 48 QSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 48 ~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
-.+.++++.||.+|+|..++.++.|+=|.|||.
T Consensus 245 ~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~ 277 (374)
T 3b5i_A 245 THFQDAWDDLVREGLVAAEKRDGFNIPVYAPSL 277 (374)
T ss_dssp SHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCH
T ss_pred HHHHHHHHHHHHhCCcchhhcccCCccccCCCH
Confidence 358888999999999999999999999999996
No 191
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=55.95 E-value=54 Score=23.80 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|||..+ -.+|.+++... .-+.+ ||-.. .||+..+|--+|..|++.|+|.....
T Consensus 39 ~~lt~~~--~~iL~~l~~~~-~~t~~---ela~~----l~i~~~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 39 QGLRVPE--WRVLACLVDND-AMMIT---RLAKL----SLMEQSRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp TTCCHHH--HHHHHHHSSCS-CBCHH---HHHHH----TTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred cCCCHHH--HHHHHHHHHCC-CcCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEeccC
Confidence 4677654 46777777643 45777 77553 59999999999999999999987643
No 192
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=55.84 E-value=64 Score=24.38 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHhhhccch--hhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEF--FQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~--f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|||..+ -.||.+++..... -+.+ ||-.. .||+..+|--+|..|+..|+|.....
T Consensus 65 ~glt~~~--~~iL~~L~~~~~~~~~t~~---eLa~~----l~is~~tvs~~l~~Le~~GlV~r~~~ 121 (181)
T 2fbk_A 65 SGLNAAG--WDLLLTLYRSAPPEGLRPT---ELSAL----AAISGPSTSNRIVRLLEKGLIERRED 121 (181)
T ss_dssp TTCCHHH--HHHHHHHHHHCCSSCBCHH---HHHHH----CSCCSGGGSSHHHHHHHHTSEECCC-
T ss_pred cCCCHHH--HHHHHHHHHcCCCCCCCHH---HHHHH----HCCCHHHHHHHHHHHHHCcCEEecCC
Confidence 5777754 5677788776543 5777 77553 59999999999999999999988754
No 193
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=55.13 E-value=59 Score=23.79 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
-|||..+ -.+|.+++... .-+.+ ||-.. .||+..+|-.+|+.|++.|+|.....
T Consensus 48 ~~lt~~~--~~iL~~l~~~~-~~t~~---ela~~----l~is~~tvs~~l~~Le~~Gli~r~~~ 101 (162)
T 3cjn_A 48 LGLSTAK--MRALAILSAKD-GLPIG---TLGIF----AVVEQSTLSRALDGLQADGLVRREVD 101 (162)
T ss_dssp HTCCHHH--HHHHHHHHHSC-SEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCHHH--HHHHHHHHHCC-CCCHH---HHHHH----HCCChhHHHHHHHHHHHCCCEEecCC
Confidence 3666653 56777777644 35777 77543 59999999999999999999987643
No 194
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=55.05 E-value=66 Score=24.30 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=46.6
Q ss_pred HHHHhhhccchhhhcchHHHHhh-cccccCCccchHHHHHHHhhhcCccccccc---ccce---eEeeccchhhH
Q psy2296 16 LLELFHEKEEFFQLKLIIELEKL-APKEKGIISQSVKEILQSLVDDGLVESEKI---GTST---YFWSFPNKASD 83 (208)
Q Consensus 16 il~~f~~~~~~f~lK~~~ElEK~-~pK~~GI~~~~VKdvlq~LVDDglV~~EKi---GtsN---~YWsFps~~~~ 83 (208)
||.++.+ ...|-.-.+.+|... .+-.-.|+.-||==+|-.|.+||+|.+++. |..- -|.++......
T Consensus 23 IL~ll~~-~p~YGYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~ 96 (122)
T 1bm9_A 23 MITMTEQ-ERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAA 96 (122)
T ss_dssp HHHHHHT-TCCBSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHH
T ss_pred HHHHHcc-CCchHHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhh
Confidence 5555533 666666655578654 333358889999999999999999999988 4442 66677664443
No 195
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=55.02 E-value=76 Score=24.99 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 86 DCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 86 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
...+..|+.++..++.++.++.+.+..-. ..=+.+..++..|+-+...++..+.++++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~------K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKN------KNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777777776664321 12234445566666666666666555554
No 196
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=54.85 E-value=60 Score=25.19 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy2296 89 LEKITAEIEDVT-KELAQNNEALEKSMVG--RGDSKNREDFLQEVGNISKELELINKELEKYKNNDP 152 (208)
Q Consensus 89 ~~~l~~~i~~~~-~~i~~l~~~ie~~~~~--r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp 152 (208)
+++|+++++.+. .+..++.+.|..+... +.+..+=...-+++..+..++..|...|....=.||
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~vid~ 77 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDY 77 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCeecCC
Confidence 566778888874 4677777788777763 334444444556678888888888888887665554
No 197
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=54.55 E-value=21 Score=29.11 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 7 LSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
++.=+|--+||+.|.......++. ||-.. .|++.-||--+|+.|++.|+|..+.
T Consensus 2 v~sl~r~l~iL~~l~~~~~~~s~~---ela~~----~gl~~stv~r~l~~L~~~G~v~~~~ 55 (241)
T 2xrn_A 2 IQVIARAASIMRALGSHPHGLSLA---AIAQL----VGLPRSTVQRIINALEEEFLVEALG 55 (241)
T ss_dssp -CHHHHHHHHHHHHHTCTTCEEHH---HHHHH----TTSCHHHHHHHHHHHHTTTSEEECG
T ss_pred ccHHHHHHHHHHHHHhCCCCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 444567889999998877778999 87553 6999999999999999999998863
No 198
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.53 E-value=42 Score=30.02 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 90 EKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 90 ~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
..++.+++.++++..++++.++.+.. +...+-+++...+.....|..++..++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTEL------GMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444444444444444444444432 2333444455555556666666666543
No 199
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=54.17 E-value=8.4 Score=32.02 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
|++.=+|--.||+.|.+...-.++. ||=.. .|++.-||--+|+.|++.|+|..+.
T Consensus 1 gi~sl~Ral~IL~~l~~~~~~lsl~---eia~~----lgl~ksT~~RlL~tL~~~G~v~~~~ 55 (260)
T 3r4k_A 1 GMGTVSKALTLLTYFNHGRLEIGLS---DLTRL----SGMNKATVYRLMSELQEAGFVEQVE 55 (260)
T ss_dssp -CCHHHHHHHHHTTCBTTBSEEEHH---HHHHH----HCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CccHHHHHHHHHHHHhhCCCCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 5667788899999999988889999 87543 6999999999999999999998763
No 200
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=54.00 E-value=60 Score=25.10 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhccC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy2296 89 LEKITAEIEDVTK-ELAQNNEALEKSMVGR--GDSKNREDFLQEVGNISKELELINKELEKYKNNDPD 153 (208)
Q Consensus 89 ~~~l~~~i~~~~~-~i~~l~~~ie~~~~~r--~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~ 153 (208)
+++|+++++.+.. +.-++...+..+.... .+..+=...-++...+..++..|...|..+.-.||.
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~vid~~ 78 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVT 78 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECGG
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCeecCcc
Confidence 5567777887776 6677777887777643 233333444456777888899999999888766654
No 201
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=53.95 E-value=60 Score=23.54 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhc
Q psy2296 130 VGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCKNKF 187 (208)
Q Consensus 130 l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~~~k~ 187 (208)
...|+.+...|......++.|..+.-.+-.+....+...+++..|+..--+-|++.+-
T Consensus 22 ~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i 79 (94)
T 3fx7_A 22 KELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERI 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHH
Confidence 3445566666666666666566666666666666666666666666666666666543
No 202
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=53.41 E-value=3.7 Score=31.66 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=31.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|+++..-..+++|.+||+ .-...|.-+ |...-||.||-... -|+.+++|+-|||+
T Consensus 1 M~r~~~~~~~~~r~~Il~---aA~~lf~~~-------------G~~~~s~~~IA~~a---------GvskgtlY~~F~sK 55 (210)
T 2wui_A 1 MARKTKEESQKTRDGILD---AAERVFLEK-------------GVGTTAMADLADAA---------GVSRGAVYGHYKNK 55 (210)
T ss_dssp --------CTHHHHHHHH---HHHHHHHHS-------------CTTTCCHHHHHHHH---------TSCHHHHHHHCSSH
T ss_pred CCCCchhhhHHHHHHHHH---HHHHHHHHc-------------CccccCHHHHHHHh---------CCCHHHHHHHcCCH
Confidence 665433344566777654 333444434 88888888876653 46667788888886
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 56 e~ 57 (210)
T 2wui_A 56 IE 57 (210)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 203
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=53.23 E-value=55 Score=24.97 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy2296 89 LEKITAEIEDVTKELAQNNEALEKSMVGR 117 (208)
Q Consensus 89 ~~~l~~~i~~~~~~i~~l~~~ie~~~~~r 117 (208)
+..|+..++.++.+++.++..+..+...|
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~~ 91 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEENN 91 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667777777777777777777666544
No 204
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.62 E-value=27 Score=22.59 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 82 SDRVDCKLEKITAEIEDVTKELAQNNEAL 110 (208)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~i 110 (208)
...++.....|+.+++.+..++++++.++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 205
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=52.54 E-value=3.9 Score=28.95 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=23.0
Q ss_pred cCCccchHHHHHHHhhhcCcccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
-||+..+|...|+.|.++|+|....
T Consensus 45 ~~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 45 FGVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp SSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 6999999999999999999998754
No 206
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=52.29 E-value=11 Score=28.66 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=29.2
Q ss_pred cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 24 EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 24 ~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
..|-+.. + +|.. -|+++.+|-.+|++|++.|+|..+.
T Consensus 49 ~~~ps~~---~---LA~~-~~~s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 49 SYFPTPN---Q---LQEG-MSISVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp CCSCCHH---H---HHTT-SSSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCCHH---H---HHHH-HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3445555 4 4444 7999999999999999999999853
No 207
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=51.98 E-value=59 Score=23.02 Aligned_cols=65 Identities=11% Similarity=0.222 Sum_probs=45.2
Q ss_pred HHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc---ccceeEeeccchhhHH
Q psy2296 14 TGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI---GTSTYFWSFPNKASDR 84 (208)
Q Consensus 14 ~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi---GtsN~YWsFps~~~~~ 84 (208)
-.||.++.+ ...+|.+. .+|+. ..+|++-+|=-+|..|.++|+|..... |-...|++.-......
T Consensus 12 ~~IL~~L~~~~~~gyel~--~~l~~----~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~ 80 (108)
T 3l7w_A 12 YLILAIVSKHDSYGYDIS--QTIKL----IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKH 80 (108)
T ss_dssp HHHHHHHHHSCEEHHHHH--HHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHH--HHHHH----HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHH
Confidence 346666765 44566553 15544 368999999999999999999998764 3345677776665443
No 208
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=50.91 E-value=40 Score=25.00 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=22.4
Q ss_pred cCCccchHHHHHHHhhhcCccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
-||+..+|.+.++.|.++|+|...
T Consensus 38 ~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 38 HRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp TTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HCcCHHHHHHHHHHHHHCCcEEEe
Confidence 699999999999999999999765
No 209
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=50.78 E-value=32 Score=26.91 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhcc-chhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc-------ccceeEeeccchhh
Q psy2296 11 EKRTGLLELFHEKE-EFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI-------GTSTYFWSFPNKAS 82 (208)
Q Consensus 11 EKr~~il~~f~~~~-~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi-------GtsN~YWsFps~~~ 82 (208)
.-|.+||..+.... ...++. ||-... .||+.-||--.|..|++.|+|..-.. |----||+.-....
T Consensus 29 ~tR~~IL~~Ll~~p~~~~ta~---eL~~~l---~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr 102 (151)
T 3u1d_A 29 ETRLDVLHQILAQPDGVLSVE---ELLYRN---PDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGI 102 (151)
T ss_dssp HHHHHHHHHHHHSTTSCBCHH---HHHHHC---TTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHH
T ss_pred hHHHHHHHHHHcCCCCCCCHH---HHHHhc---CCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHH
Confidence 35777888887654 457888 876432 24999999999999999999986533 44455777777666
Q ss_pred HHH
Q psy2296 83 DRV 85 (208)
Q Consensus 83 ~~~ 85 (208)
...
T Consensus 103 ~~l 105 (151)
T 3u1d_A 103 ALL 105 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 210
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.59 E-value=1.2e+02 Score=30.76 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALE 111 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie 111 (208)
+..++..+++.+..++..+.+++..+.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~ 888 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHT 888 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 211
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=50.58 E-value=36 Score=25.85 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccc-------ccccccc-e--eEeeccc
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVE-------SEKIGTS-T--YFWSFPN 79 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~-------~EKiGts-N--~YWsFps 79 (208)
++.-.+||..+++.... +.+ ||=+ . -|+++.+|-.-++.|.+.|+|. -.+.|-. + +.|..+.
T Consensus 2 D~~d~~il~~L~~~~~~-s~~---~la~---~-lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~ 73 (162)
T 3i4p_A 2 DRLDRKILRILQEDSTL-AVA---DLAK---K-VGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTAS 73 (162)
T ss_dssp CHHHHHHHHHHTTCSCS-CHH---HHHH---H-HTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCS
T ss_pred CHHHHHHHHHHHHCCCC-CHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcC
Confidence 34567889999876544 666 5532 3 6999999999999999999976 3577853 2 3455655
Q ss_pred h
Q psy2296 80 K 80 (208)
Q Consensus 80 ~ 80 (208)
.
T Consensus 74 ~ 74 (162)
T 3i4p_A 74 H 74 (162)
T ss_dssp C
T ss_pred C
Confidence 4
No 212
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=50.56 E-value=26 Score=26.04 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=36.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|++++.-..+++|.+|++-. ...|.- .|+...||.||-+.. -|+.+++|.-|||+
T Consensus 2 m~~~~~~~~~~~r~~Il~aa---~~l~~~-------------~G~~~~t~~~Ia~~a---------gvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 2 MPIPLEKQNKERRQKILTCS---LDLFIE-------------KGYYNTSIRDIIALS---------EVGTGTFYNYFVDK 56 (202)
T ss_dssp -------CHHHHHHHHHHHH---HHHHHH-------------HCTTTCCHHHHHHHH---------CSCHHHHHHHCSSH
T ss_pred CCcccccccHHHHHHHHHHH---HHHHHH-------------cCcccCCHHHHHHHh---------CCCchhHHHHcCCH
Confidence 55556667788888887643 233333 499899999987653 46778999999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 57 ~~ 58 (202)
T 3lwj_A 57 ED 58 (202)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 213
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=49.57 E-value=11 Score=28.73 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchh
Q psy2296 15 GLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKA 81 (208)
Q Consensus 15 ~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~ 81 (208)
++|-++.. .....+.+ || +.. .||++..|..+++.|+..|+|.+.+ |.+-|.-+-|...
T Consensus 18 ~~L~~La~~~~~~~~~~---~i---A~~-~~i~~~~l~kil~~L~~~Glv~s~r-G~GGy~L~~~p~~ 77 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSD---YM---AES-VNTNPVVIRKIMSYLKQAGFVYVNR-GPGGAGLLKDLHE 77 (149)
T ss_dssp HHHHHHHHSCGGGCCHH---HH---HHH-HTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHHhCCCCCcCHH---HH---HHH-HCcCHHHHHHHHHHHHHCCcEEEcc-CCCceEeCCChhh
Confidence 44444443 34567777 54 333 7999999999999999999999876 6566666666544
No 214
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=49.40 E-value=53 Score=23.44 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=22.9
Q ss_pred cCcccccccccceeEeecc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 60 DGLVESEKIGTSTYFWSFP-NKASDRVDCKLEKITAEIEDVTKELAQNNEALE 111 (208)
Q Consensus 60 DglV~~EKiGtsN~YWsFp-s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie 111 (208)
++-..--.|| .+|-..| ..+...+..+.+.+...++.+..++..++..++
T Consensus 51 ~d~~vy~~iG--~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~ 101 (117)
T 2zqm_A 51 DDAVVYKTVG--TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLK 101 (117)
T ss_dssp TTCCEEEEET--TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHhHHHhh--HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333446677 3343333 344444444455555444444444444444433
No 215
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=49.25 E-value=32 Score=25.51 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccc-------cccccc
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVE-------SEKIGT 70 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~-------~EKiGt 70 (208)
+++...+||..++... .-+.+ ||=+ . .|+++.+|-..++.|.+.|+|. -.+.|-
T Consensus 7 ld~~d~~il~~L~~~~-~~s~~---ela~---~-lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~ 67 (151)
T 2dbb_A 7 LDRVDMQLVKILSENS-RLTYR---ELAD---I-LNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGY 67 (151)
T ss_dssp CCHHHHHHHHHHHHCT-TCCHH---HHHH---H-TTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTE
T ss_pred CCHHHHHHHHHHHHcC-CCCHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCC
Confidence 4555668999998753 35666 6533 3 6999999999999999999996 467885
No 216
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=49.25 E-value=15 Score=27.69 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|++++.-..+++|.+|++-.. ..|.= +|+...||.||.... .|+.+++|+-|||+
T Consensus 1 M~~~~~~~~~~~r~~Il~aA~---~lf~~-------------~G~~~~ti~~Ia~~a---------gvs~~t~Y~~F~sK 55 (216)
T 3f0c_A 1 MTDNKIKNEDGKLELIINAAQ---KRFAH-------------YGLCKTTMNEIASDV---------GMGKASLYYYFPDK 55 (216)
T ss_dssp ---------CCHHHHHHHHHH---HHHHH-------------HCSSSCCHHHHHHHH---------TCCHHHHHHHCSSH
T ss_pred CCCccccccHHHHHHHHHHHH---HHHHH-------------cCCCcCCHHHHHHHh---------CCCHHHHHHHcCCH
Confidence 665555556677887766432 23333 499999999987653 46788999999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 56 ~~ 57 (216)
T 3f0c_A 56 ET 57 (216)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 217
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=48.78 E-value=97 Score=24.38 Aligned_cols=29 Identities=34% Similarity=0.530 Sum_probs=25.2
Q ss_pred cCCccchHHHHHHHhhhcCccccc-ccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE-KIGTS 71 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E-KiGts 71 (208)
-||+..+|.|.|+.|..+|||.+. ..|+.
T Consensus 49 lgVSRtpVREAl~~L~~eGlv~~~~~~G~~ 78 (222)
T 3ihu_A 49 FGVGRNSVREALQRLAAEGIVDLQRHRGAV 78 (222)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECSTTCEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEecCCCeE
Confidence 699999999999999999999875 44543
No 218
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=48.59 E-value=10 Score=27.36 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCCCHHHHhhhcCCCCCC
Q psy2296 178 SLKSWCKNKFGLEETALNKHFSIPEEM 204 (208)
Q Consensus 178 ~l~~~~~~k~~~~~~~i~~~f~Ip~d~ 204 (208)
+|..|+...+||.+++-+.-||+|.|+
T Consensus 33 ~LkRHL~~~hgltpeeYR~kwGlp~dy 59 (87)
T 2jsp_A 33 SLKRHLTTHHSMTPEEYREKWDLPVDY 59 (87)
T ss_dssp BHHHHHHHTTCSCHHHHHHHTTCGGGC
T ss_pred HHHHHHHHccCCCHHHHHHHhCCCCCC
Confidence 467899988999999999999999986
No 219
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=48.37 E-value=1.1e+02 Score=24.76 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=55.1
Q ss_pred cCCccchHHHHHHHhhhc-CcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q psy2296 43 KGIISQSVKEILQSLVDD-GLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSK 121 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDD-glV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~ 121 (208)
.++...|..|+-+-|-|+ +++.. |.=.+|+ ....+..++.+...++.+. +++..++..+ .
T Consensus 33 ~~L~~LS~~eL~~LL~~~~dlL~~-------~v~~l~~--~q~~~~~~e~l~s~ae~ll----~l~~~Le~~r------~ 93 (192)
T 2p22_C 33 EGINLLSSKEIIDLIQTHRHQLEL-------YVTKFNP--LTDFAGKIHAFRDQFKQLE----ENFEDLHEQK------D 93 (192)
T ss_dssp SGGGSCTTHHHHHHHHHCHHHHHH-------HGGGGSC--CHHHHHHHHHHHHHHHHHH----HHHHHHHHHH------H
T ss_pred HHHHhCCHHHHHHHHhChHHHHHH-------HHHhchh--HHHHHHHHHHHHHHHHHHH----HHhhhHHHHH------H
Confidence 378888888866666666 66542 1223443 3334444444433333332 2222222111 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHH-hcCCHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy2296 122 NREDFLQEVGNISKELELINKEL-EKY-KNNDPDTLKLIENTAQRAKEAANRWTDNL 176 (208)
Q Consensus 122 eR~~ll~~l~~L~~~~~~l~~el-~~~-~~~Dp~~i~~~~~~~~~~k~aanrwTDNI 176 (208)
.=..++.+++.|..+......++ ..+ +.+.|..+-. .+..+...++-=+++|
T Consensus 94 ~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~---~L~~a~~e~eeeS~~l 147 (192)
T 2p22_C 94 KVQALLENARILESKYVASWQDYHSEFSKKYGDIALKK---KLEQNTKKLDEESSQL 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 11344555666666665555555 345 4588887743 3444444444444444
No 220
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=48.14 E-value=9.7 Score=26.44 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=35.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCc
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGL 62 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDgl 62 (208)
|+ ++..|.+.|...+..+... .=.++. ++-+ .-||++.||--.+...-..|.
T Consensus 1 M~-r~~ys~e~k~~~v~~~~~~--~g~s~~---~ia~----~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 1 MP-TKTYSEEFKRDAVALYENS--DGASLQ---QIAN----DLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CC-CCCCCHHHHHHHHHHHTTG--GGSCHH---HHHH----HHTSCHHHHHHHHHHHCCCST
T ss_pred CC-CCCCCHHHHHHHHHHHHHc--CCChHH---HHHH----HHCcCHHHHHHHHHHHhhcCc
Confidence 77 4679999988776555433 024566 5432 269999999999887766654
No 221
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.94 E-value=2.9e+02 Score=31.68 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=9.0
Q ss_pred HHHHHhhhhhhHHHHH
Q psy2296 165 AKEAANRWTDNLFSLK 180 (208)
Q Consensus 165 ~k~aanrwTDNI~~l~ 180 (208)
+-..-.||+..+..+.
T Consensus 2082 L~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2082 LNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHH
Confidence 3344457776665554
No 222
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.01 E-value=46 Score=20.70 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALEKS 113 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 113 (208)
+-.+++++..+|+..+.+|.+++.++..+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777776665443
No 223
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=46.86 E-value=38 Score=25.05 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=37.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|+++ .-..+++|.+|++-. ...|.- .|+...||.||.+.. -|+.+++|.-|||+
T Consensus 2 M~r~-~~~~~~~r~~Il~aA---~~lf~~-------------~G~~~~s~~~Ia~~a---------gvs~~t~Y~~F~sK 55 (203)
T 3b81_A 2 MSRT-NINFNNKRTELANKI---WDIFIA-------------NGYENTTLAFIINKL---------GISKGALYHYFSSK 55 (203)
T ss_dssp ------CCHHHHHHHHHHHH---HHHHHH-------------HCSTTCCHHHHHHHH---------TCCHHHHHTTCSSH
T ss_pred CCcc-ccChHHHHHHHHHHH---HHHHHH-------------cCcccCcHHHHHHHh---------CCCchhHHHHcCCH
Confidence 6643 345778888887633 333333 499999999988754 57788999999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 56 ~~ 57 (203)
T 3b81_A 56 EE 57 (203)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 224
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=46.47 E-value=23 Score=29.60 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
.++..=+|--.||+.|.....-.++. ||=.. .|++.-||--+|+.|++.|+|..+.
T Consensus 24 ~~v~sl~Ral~IL~~l~~~~~~ltl~---eia~~----lgl~ksTv~RlL~tL~~~G~v~~~~ 79 (275)
T 3mq0_A 24 DTVPALRRAVRILDLVAGSPRDLTAA---ELTRF----LDLPKSSAHGLLAVMTELDLLARSA 79 (275)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCEEHH---HHHHH----HTCC--CHHHHHHHHHHTTSEEECT
T ss_pred CcchHHHHHHHHHHHHhhCCCCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEECC
Confidence 44556678899999999988889999 87443 6999999999999999999998874
No 225
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=46.45 E-value=47 Score=24.53 Aligned_cols=45 Identities=9% Similarity=0.205 Sum_probs=30.0
Q ss_pred cccceeEeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 68 IGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEK 112 (208)
Q Consensus 68 iGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~ 112 (208)
+|+.-|-..=..++..-+.++++.++..++.++..+..+++.+..
T Consensus 76 lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~ 120 (133)
T 1fxk_C 76 VGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120 (133)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 787555555555677777777777777777777777666655543
No 226
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=46.34 E-value=35 Score=24.60 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHhhhc-cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEK-EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~-~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|||..+ -.+|.++... ..-.+.+ ||-.. -|+.+.+|--+|+.|++.|+|......
T Consensus 33 ~~lt~~q--~~vL~~l~~~~~~~~t~~---eLa~~----l~~~~~tvs~~l~~Le~~Glv~r~~~~ 89 (127)
T 2frh_A 33 FSISFEE--FAVLTYISENKEKEYYLK---DIINH----LNYKQPQVVKAVKILSQEDYFDKKRNE 89 (127)
T ss_dssp TCCCHHH--HHHHHHHHHTCCSEEEHH---HHHHH----SSSHHHHHHHHHHHHHHTTSSCCBCCS
T ss_pred cCCCHHH--HHHHHHHHhccCCCcCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 4777765 4567777654 2456788 76553 589999999999999999999886543
No 227
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.25 E-value=94 Score=23.50 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy2296 95 EIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRA 165 (208)
Q Consensus 95 ~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 165 (208)
+-..++.-+..|...+++.+... ..++++|+.+++.|..+|...+ +.+++++.+....
T Consensus 47 QAaTCNqTV~tL~~SL~~ekaq~---------q~~vqeLqgEI~~Lnq~Lq~a~----ae~erlr~~~~~~ 104 (121)
T 3mq7_A 47 QAATANHTVMALMASLDAEKAQG---------QKKVEELEGEITTLNHKLQDAS----AEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhchhh
Confidence 33444555555666665554321 4457777777777777776654 3566666655533
No 228
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.21 E-value=13 Score=25.66 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=30.3
Q ss_pred HHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhc
Q psy2296 17 LELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDD 60 (208)
Q Consensus 17 l~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDD 60 (208)
|.=++..+-+-+=. ||++++.+ .+++.+.|||-.-+..-+
T Consensus 21 L~~Yy~~hk~L~Ee---Dl~~L~~k-skms~qqvkdwFa~k~~E 60 (70)
T 2ys9_A 21 LERYWAAHQQLRET---DIPQLSQA-SRLSTQQVLDWFDSRLPQ 60 (70)
T ss_dssp HHHHHHHTCCCCTT---HHHHHHHH-TTCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcccchh---hHHHHHHH-hCCCHHHHHHHHHhcccc
Confidence 33334444555667 99999999 999999999998776654
No 229
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=46.01 E-value=81 Score=22.74 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=46.5
Q ss_pred HHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc----ccceeEeeccchhhHH
Q psy2296 15 GLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI----GTSTYFWSFPNKASDR 84 (208)
Q Consensus 15 ~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi----GtsN~YWsFps~~~~~ 84 (208)
-||.++.+ ...+|.|. ..|+. .. ..+|++-+|=-+|..|.++|+|..... |-..-|++.-......
T Consensus 13 ~IL~~L~~~~~~Gyei~--~~l~~-~~-~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~ 83 (115)
T 4esb_A 13 CILYIISQEEVYGYELS--TKLNK-HG-FTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQ 83 (115)
T ss_dssp HHHHHHHHSCEEHHHHH--HHHHH-TT-CTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHH
T ss_pred HHHHHHHcCCCCHHHHH--HHHHH-cC-CCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHH
Confidence 46666654 56677775 25665 22 247899999999999999999998753 4456677877666544
No 230
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=45.91 E-value=10 Score=28.04 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=27.5
Q ss_pred hcccccCCccchHHHHHHHhhhcCcccccccccc
Q psy2296 38 LAPKEKGIISQSVKEILQSLVDDGLVESEKIGTS 71 (208)
Q Consensus 38 ~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGts 71 (208)
+.|+.-||+-----++++.|+|+|+|..-.+...
T Consensus 21 is~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~ 54 (102)
T 2hgc_A 21 LSENDIGVTEDQFDDAVNFLKREGYIIGVHYSDD 54 (102)
T ss_dssp CCHHHHTSCHHHHHHHHHHHHHHTSEECCEESSS
T ss_pred CCHHhcCCCHHHHHHHHHHHHHCCCccceEEEeC
Confidence 5555449999999999999999999988776433
No 231
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=45.54 E-value=38 Score=26.16 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccc-------ccccccceeEe--eccc
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVE-------SEKIGTSTYFW--SFPN 79 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~-------~EKiGtsN~YW--sFps 79 (208)
++-..+||..++.... -+.+ ||=+ . .|+++.+|-..|+.|.+.|+|. -.+.|-.+.|| ..+.
T Consensus 16 d~~d~~IL~~L~~~~~-~s~~---eLA~---~-lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~ 86 (171)
T 2ia0_A 16 DDLDRNILRLLKKDAR-LTIS---ELSE---Q-LKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGK 86 (171)
T ss_dssp CHHHHHHHHHHHHCTT-CCHH---HHHH---H-HTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESC
T ss_pred CHHHHHHHHHHHHcCC-CCHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECC
Confidence 3444588999987543 4666 6533 3 6999999999999999999996 45777544443 4444
No 232
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=45.50 E-value=60 Score=22.15 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy2296 124 EDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aan 170 (208)
+++.+++.+|+.++-.|.-+...=+-.+|..|...+.++...+..++
T Consensus 19 eEL~~~L~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 65 (72)
T 3v2d_2 19 VELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLN 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 55666667777777766666554333569999999999988877655
No 233
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=45.45 E-value=27 Score=25.48 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
.-|||..+ -.+|.++.... ..+.+ ||-.. .||+..+|--+|+.|++.|+|.....
T Consensus 42 ~~~l~~~~--~~iL~~l~~~~-~~t~~---ela~~----l~~s~~tvs~~l~~Le~~glv~r~~~ 96 (153)
T 2pex_A 42 ALDLTYPQ--YLVMLVLWETD-ERSVS---EIGER----LYLDSATLTPLLKRLQAAGLVTRTRA 96 (153)
T ss_dssp TTTCCHHH--HHHHHHHHHSC-SEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HCCCCHHH--HHHHHHHHhCC-CcCHH---HHHHH----hCCCcccHHHHHHHHHHCCCEeecCC
Confidence 45787754 45777777643 46778 77553 58999999999999999999998764
No 234
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=45.27 E-value=89 Score=31.66 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2296 129 EVGNISKELELINKELEK 146 (208)
Q Consensus 129 ~l~~L~~~~~~l~~el~~ 146 (208)
++.+++.++..+..+++.
T Consensus 921 ~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 921 KKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 235
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.05 E-value=93 Score=23.11 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 82 SDRVDCKLEKITAEIEDVTKELAQNNEALEKSM 114 (208)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~ 114 (208)
...+++.+..|+.+++.+......|+..|..+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344566667777777777777777776666553
No 236
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=44.99 E-value=12 Score=28.27 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=36.8
Q ss_pred CCC--CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhccccc--CCccchHHHHHHH
Q psy2296 1 MSK--KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEK--GIISQSVKEILQS 56 (208)
Q Consensus 1 Msk--kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~--GI~~~~VKdvlq~ 56 (208)
||+ ++.||.++|+.-+ +++++.+.-.+.. +|=+.+...- ||+..||-++|..
T Consensus 4 m~~~~R~~lT~~qK~~i~-~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 4 MGKIKRRAITEHEKRALR-HYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCCCSSSCCCSHHHHHHH-HHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCCCcCccCCHHHHHHHH-HHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 655 6889999988754 5554544556777 8877554444 7888899888876
No 237
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=44.62 E-value=12 Score=28.29 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=34.0
Q ss_pred CC-HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 7 LS-VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 7 lS-~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
|+ .+++|.+|++-.. ..|. . +|....||.||.+.. -|+.+++|.-|||+..
T Consensus 8 m~~~~~~r~~Il~aa~---~lf~------------~-~G~~~~tv~~Ia~~a---------gvs~~t~Y~~F~sK~~ 59 (195)
T 2iu5_A 8 MEKSIITQKIIAKAFK---DLMQ------------S-NAYHQISVSDIMQTA---------KIRRQTFYNYFQNQEE 59 (195)
T ss_dssp CCTTSHHHHHHHHHHH---HHHH------------H-SCGGGCCHHHHHHHH---------TSCGGGGGGTCSSHHH
T ss_pred ccccHHHHHHHHHHHH---HHHH------------h-CCCCeeCHHHHHHHh---------CCCHHHHHHHcCCHHH
Confidence 44 4567787766432 2222 2 488888888887654 4678888999998754
No 238
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.52 E-value=28 Score=31.21 Aligned_cols=53 Identities=8% Similarity=0.142 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCChhHHHHHHHHHHHH
Q psy2296 82 SDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVG-RGDSKNREDFLQEVGNIS 134 (208)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~-r~~~~eR~~ll~~l~~L~ 134 (208)
...+..++..++++..+++..+.+++..++.+... +.....|..+-+++.+|+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567777777777777777777777777666542 233345777766666654
No 239
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=44.50 E-value=39 Score=24.19 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhc---cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHH
Q psy2296 12 KRTGLLELFHEK---EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDC 87 (208)
Q Consensus 12 Kr~~il~~f~~~---~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~ 87 (208)
..--||.++... .++|.+. .+|++... -.+++-||=-+|..|.++|+|.+.. |-..-|++.-......+..
T Consensus 10 ~~~~IL~lL~~~~~~~~g~~i~--~ei~~~~~--~~is~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~iT~~Gr~~l~~ 83 (99)
T 2co5_A 10 NYYIILKVLVINGSRLEKKRLR--SEILKRFD--IDISDGVLYPLIDSLIDDKILREEE-APDGKVLFLTEKGMKEFEE 83 (99)
T ss_dssp HHHHHHHHHHHTTTEEEGGGHH--HHHHHHHC--CBCCHHHHHHHHHHHHHTTSEEEEC-CTTSCEEEECHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHH--HHHHHHhC--CCCCCCcHHHHHHHHHHCCCEEEee-CCCcEEEEECHHHHHHHHH
Confidence 334477777532 3444332 27766543 2688999999999999999999987 6666666666665544433
No 240
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.47 E-value=96 Score=23.13 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 82 SDRVDCKLEKITAEIEDVTKELAQNNEALEKSM 114 (208)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~ 114 (208)
...+++.+..|+.+++.+......|+..|..+.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344566667777777777766666666665553
No 241
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=44.45 E-value=18 Score=24.81 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 8 SVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 8 S~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
+-++=+..|...| +.+.+|+|| +|...... +.+=+||||... -...|-|...-.|.+..+
T Consensus 5 ~~~~l~d~lF~~F-ek~~yw~lK---~L~~~t~Q----P~~yLKeiL~~I-----a~~~k~g~~~~~weLKpE 64 (69)
T 1bby_A 5 DKQHVLDMLFSAF-EKHQYYNLK---DLVDITKQ----PVVYLKEILKEI-----GVQNVKGIHKNTWELKPE 64 (69)
T ss_dssp HHHHHHHHHHHHH-HHCSCBCHH---HHHHHCCS----CHHHHHHHHHHH-----CCCBCCTTCCCBBCCCCS
T ss_pred CHHHHHHHHHHHH-hhcCCCcHH---HHHHHHcC----cHHHHHHHHHHH-----HHHHcCCCCCCeeeCcHH
Confidence 3444456666666 678999999 99887654 678899999876 345678888788887754
No 242
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.27 E-value=47 Score=21.38 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=19.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 118 GDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 118 ~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
++..+=+++..++.+|+.++..|.++++.+.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666665554
No 243
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=44.25 E-value=16 Score=31.93 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=47.7
Q ss_pred HHHHHHHHHHH----hhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccc
Q psy2296 9 VEEKRTGLLEL----FHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTS 71 (208)
Q Consensus 9 ~eEKr~~il~~----f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGts 71 (208)
++|.+..||+. +-.+..+=..+ +|-+..+= |+++.||.-.+..|-+.|++..---|.+
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~---~La~~~~l--~VS~aTIRrDL~~LE~~GlL~r~HgsAg 76 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQ---RVLEVSNI--EFSSATIRNDMKKLEYLGYIYQPHTSAG 76 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHH---HHHHHSCC--CSCHHHHHHHHHHHHHTTSEECCSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHhCC--CCCHHHHHHHHHHHHHCCCEEEccCcce
Confidence 46899999995 44567777888 88776655 9999999999999999999988766654
No 244
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=43.99 E-value=70 Score=21.37 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy2296 124 EDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aan 170 (208)
+++.+++.+|+.++-.|.-+...=+-.+|..|...+.++...+.-++
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 58 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILR 58 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCccCcHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777766665222579999999999888776554
No 245
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=43.90 E-value=42 Score=25.23 Aligned_cols=49 Identities=10% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhH
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASD 83 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~ 83 (208)
+++|.+| +..-...|.-| |....||.||.+.. -|+.+++|.-|||+..-
T Consensus 11 ~~~r~~I---l~aA~~lf~~~-------------Gy~~ts~~~IA~~a---------gvs~gtlY~yF~sKe~L 59 (205)
T 1rkt_A 11 DKRQAEI---LEAAKTVFKRK-------------GFELTTMKDVVEES---------GFSRGGVYLYFSSTEEM 59 (205)
T ss_dssp HHHHHHH---HHHHHHHHHHH-------------CSTTCCHHHHHHHH---------TSCHHHHHTTCSCHHHH
T ss_pred HHHHHHH---HHHHHHHHHHc-------------CcccCCHHHHHHHH---------CCCcchhhhhCCCHHHH
Confidence 4455554 45555666655 99999999988753 47788999999997643
No 246
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=43.76 E-value=25 Score=28.00 Aligned_cols=53 Identities=25% Similarity=0.473 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc---cccc
Q psy2296 9 VEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE---KIGT 70 (208)
Q Consensus 9 ~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E---KiGt 70 (208)
.++-+.+||.+++. ..-+.. ||-.. .|+++.+|-..|+.|.+.|+|... +.|.
T Consensus 18 ~d~~~~~IL~~L~~--~~~s~~---eLA~~----lglS~stv~~~l~~Le~~GlI~~~~~~~~~~ 73 (192)
T 1uly_A 18 LEDTRRKILKLLRN--KEMTIS---QLSEI----LGKTPQTIYHHIEKLKEAGLVEVKRTEMKGN 73 (192)
T ss_dssp HSHHHHHHHHHHTT--CCBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEEEEEETT
T ss_pred CCHHHHHHHHHHHc--CCCCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 35677889999984 346777 76432 699999999999999999999887 5665
No 247
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=43.63 E-value=11 Score=28.09 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=38.8
Q ss_pred CCC-CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 1 MSK-KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 1 Msk-kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
|++ ++..+.++.|.+|++-.. ..|.- .|+...||.||.... -|+.+++|.-|||
T Consensus 3 m~~~~~~~~~~~~r~~Il~aa~---~l~~~-------------~G~~~~ti~~Ia~~a---------gvs~~t~Y~~F~s 57 (203)
T 3f1b_A 3 MAGGTKRLPRAVREQQMLDAAV---DVFSD-------------RGFHETSMDAIAAKA---------EISKPMLYLYYGS 57 (203)
T ss_dssp ------CCCHHHHHHHHHHHHH---HHHHH-------------HCTTTCCHHHHHHHT---------TSCHHHHHHHCCS
T ss_pred CCCCCCCCChHHHHHHHHHHHH---HHHHH-------------cCcccccHHHHHHHh---------CCchHHHHHHhCC
Confidence 543 567889999999876543 23332 488899999987653 4678889999999
Q ss_pred hhh
Q psy2296 80 KAS 82 (208)
Q Consensus 80 ~~~ 82 (208)
+..
T Consensus 58 K~~ 60 (203)
T 3f1b_A 58 KDE 60 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 248
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.60 E-value=95 Score=24.73 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHH
Q psy2296 134 SKELELINKELEKYK---NNDPDTLKLIENTAQRAKEAA 169 (208)
Q Consensus 134 ~~~~~~l~~el~~~~---~~Dp~~i~~~~~~~~~~k~aa 169 (208)
+.++...+.||..+- ..||++|..+.+++..++..+
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333444444444433 257778887777777776654
No 249
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=43.44 E-value=96 Score=22.83 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=45.4
Q ss_pred HHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc---cceeEeeccchhhHH
Q psy2296 15 GLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG---TSTYFWSFPNKASDR 84 (208)
Q Consensus 15 ~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG---tsN~YWsFps~~~~~ 84 (208)
.||.++......|.|. .+|+..+ .+|++-||=-+|..|.++|+|...... -..-|++.-......
T Consensus 25 ~IL~lL~~p~~GYei~--~~l~~~~---~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~ 92 (123)
T 3ri2_A 25 LVLSQLREPAYGYALV--KSLADHG---IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRV 92 (123)
T ss_dssp HHHHHTTSCEEHHHHH--HHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHH
T ss_pred HHHHHHcCCCCHHHHH--HHHHHhC---CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHH
Confidence 4677777555566554 2677664 689999999999999999999987532 234566665555433
No 250
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=43.35 E-value=83 Score=22.04 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 92 ITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 92 l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
+.+.+...+.++..|...=+.++.| ...+-.-+..|+.+...+.+.++.|++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G------~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKG------HQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444443 355666677777777778777777763
No 251
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.23 E-value=78 Score=21.70 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
++.++..|..+.+....+...++..+..+. ..+...-.++..|+..+..+..+++.+.+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e------~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAE------ERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666665555442 24566678888888888888888888774
No 252
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.10 E-value=83 Score=22.01 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=29.4
Q ss_pred hcCcccccccccceeEeeccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 59 DDGLVESEKIGTSTYFWSFPN-KASDRVDCKLEKITAEIEDVTKELAQNNEALEKSM 114 (208)
Q Consensus 59 DDglV~~EKiGtsN~YWsFps-~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~ 114 (208)
||+-..--.||. +|-..|- ++...+..+.+.+...++.++.++..++..+++.+
T Consensus 45 ~~d~~vy~~iG~--vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 45 ADDAEVYKSSGN--ILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp CTTCCEEEEETT--EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHhH--HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434467773 3433333 44555566666666666666666666665555443
No 253
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=43.10 E-value=89 Score=22.34 Aligned_cols=53 Identities=26% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhh---hccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 6 GLSVEEKRTGLLELFH---EKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 6 glS~eEKr~~il~~f~---~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
++|..+- .+|..+. .....-+++ ||-+. -||+..+|-..|+.|++.|+|....
T Consensus 10 ~lt~~~~--~~L~~l~~l~~~~~~~s~~---ela~~----l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 10 NLSRREF--SYLLTIKRYNDSGEGAKIN---RIAKD----LKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp -CCHHHH--HHHHHHHHHHTTTSCBCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred hcCHHHH--HHHHHHHHHHhcCCCcCHH---HHHHH----hCCChHHHHHHHHHHHHCCCEEecC
Confidence 4554433 3344443 344556777 76543 6999999999999999999999876
No 254
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=43.03 E-value=12 Score=29.22 Aligned_cols=54 Identities=26% Similarity=0.423 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
++....+++|.+|++-.. ..|.- +|+...||.||.+.. -|+.+++|+-|+|+..
T Consensus 6 ~~~~~~~~~r~~Il~AA~---~l~~~-------------~G~~~~tv~~IA~~a---------gvs~~t~Y~~F~sK~~ 59 (231)
T 2qib_A 6 RRRMGVEERRQQLIGVAL---DLFSR-------------RSPDEVSIDEIASAA---------GISRPLVYHYFPGKLS 59 (231)
T ss_dssp ---CCHHHHHHHHHHHHH---HHHHH-------------SCGGGCCHHHHHHHH---------TSCHHHHHHHCSSHHH
T ss_pred CCCcCHHHHHHHHHHHHH---HHHHH-------------cCchhcCHHHHHHHh---------CCCHHHHHHHCCCHHH
Confidence 466888999999876432 23332 489899999987764 4778889999999754
No 255
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=43.00 E-value=47 Score=25.32 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=32.4
Q ss_pred cccceeEeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 68 IGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEK 112 (208)
Q Consensus 68 iGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~ 112 (208)
+|+.-|-..=..+|..-+.++++.++..++.++..+..+++.+..
T Consensus 86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~ 130 (151)
T 2zdi_C 86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGE 130 (151)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677655555566777778888888888888877777777766543
No 256
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=42.91 E-value=34 Score=25.76 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=32.5
Q ss_pred HHHhhcccccCCccchHHHHHHHhhhcCcccccccccc--eeEeeccchh
Q psy2296 34 ELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTS--TYFWSFPNKA 81 (208)
Q Consensus 34 ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGts--N~YWsFps~~ 81 (208)
||-+..| ||++.++-..|..|.++|||......+. .++++.-..+
T Consensus 44 eL~~~l~---gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G 90 (131)
T 4a5n_A 44 EFRRICP---SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFG 90 (131)
T ss_dssp HHHHHCT---TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG
T ss_pred HHHHHhc---ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhH
Confidence 5555543 8999999999999999999987765431 3455554443
No 257
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.84 E-value=77 Score=21.57 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHh
Q psy2296 124 EDFLQEVGNISKELELINKELEKYK-NNDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~~-~~Dp~~i~~~~~~~~~~k~aan 170 (208)
+++..++.+|+.++-.|.-+...=. -.+|..|...+.++...+.-++
T Consensus 12 ~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~ 59 (72)
T 3j21_W 12 EEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKK 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777776666555 4569999998888888776655
No 258
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=42.73 E-value=94 Score=22.51 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=47.3
Q ss_pred HHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc----ccceeEeeccchhhHHHH
Q psy2296 15 GLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI----GTSTYFWSFPNKASDRVD 86 (208)
Q Consensus 15 ~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi----GtsN~YWsFps~~~~~~~ 86 (208)
-||.++.+ ....|.|. ..|+..+ ..+|++-+|=-+|..|.++|+|..... |-..-|++.-......+.
T Consensus 15 ~IL~lL~~~p~~Gyei~--~~l~~~g--~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~ 87 (117)
T 4esf_A 15 CVLEIISRRETYGYEIT--RHLNDLG--FTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELE 87 (117)
T ss_dssp HHHHHHHHSCBCHHHHH--HHHHHHT--CTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHH--HHHHHcC--CCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHH
Confidence 35666654 55677765 2666652 258999999999999999999998753 444567787777654433
No 259
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.53 E-value=1.9e+02 Score=26.04 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 80 KASDRVDCKLEKITAEIEDVTKELAQNNEALE 111 (208)
Q Consensus 80 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie 111 (208)
.....++.+....++.+.....++.+......
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 66777777777777777777777776655544
No 260
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=42.12 E-value=76 Score=21.25 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy2296 123 REDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 123 R~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aan 170 (208)
-+++..++.+|+.++-.|.-+...=.-.+|..|...+.++...+.-++
T Consensus 11 ~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 58 (67)
T 2zjr_V 11 ATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKA 58 (67)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888877766223579999999999988876554
No 261
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.81 E-value=1.3e+02 Score=23.90 Aligned_cols=68 Identities=6% Similarity=0.133 Sum_probs=47.0
Q ss_pred eccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCChhHHHHHHHHHHHHHHHHHHHHH
Q psy2296 76 SFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGR-GDSKNREDFLQEVGNISKELELINKE 143 (208)
Q Consensus 76 sFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r-~~~~eR~~ll~~l~~L~~~~~~l~~e 143 (208)
.+..+...+++.-.++...+...+..++...+.++..+...- .|...=.++..++.+|+.++.....+
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777788888888888888898888887654 34444566666677666665554443
No 262
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=41.66 E-value=11 Score=31.05 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=24.9
Q ss_pred cCCccchHHHHHHHhhhcCccccccccccee
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTY 73 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~ 73 (208)
-||+.+||...|+.|+++|+|... -|.+.|
T Consensus 44 ~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~ 73 (243)
T 2wv0_A 44 FGISRMTVRQALSNLVNEGLLYRL-KGRGTF 73 (243)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEC-TTSCEE
T ss_pred HCcCHHHHHHHHHHHHHCCcEEEe-CCCeEE
Confidence 699999999999999999999764 354443
No 263
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=41.52 E-value=11 Score=29.33 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=21.1
Q ss_pred CccchHHHHHHHhhhcCccccc
Q psy2296 45 IISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 45 I~~~~VKdvlq~LVDDglV~~E 66 (208)
++..+|.+.||.|..+|+|...
T Consensus 93 vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 93 AGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHHHHCCCEEEe
Confidence 9999999999999999999876
No 264
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=41.15 E-value=1e+02 Score=24.90 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=25.0
Q ss_pred cCCccchHHHHHHHhhhcCccccc-cccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE-KIGT 70 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E-KiGt 70 (208)
-||+..+|.+-|..|..+|+|... ..|+
T Consensus 59 lgVSr~~VReAL~~L~~~Glv~~~~~~G~ 87 (237)
T 3c7j_A 59 FGVSRMPVREALRQLEAQSLLRVETHKGA 87 (237)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEeCCCce
Confidence 699999999999999999999987 4554
No 265
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=41.14 E-value=4.7 Score=31.10 Aligned_cols=57 Identities=23% Similarity=0.461 Sum_probs=35.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|+++..-..+++|.+||+ .-...|.-+ |...-||.||.... -|+.+++|+-|||+
T Consensus 1 M~~~~~~~~~~~r~~Il~---aA~~lf~~~-------------G~~~~s~~~IA~~a---------GvskgtlY~~F~sK 55 (219)
T 2w53_A 1 MARKTKEDTQATREGILD---AAEACFHEH-------------GVARTTLEMIGARA---------GYTRGAVYWHFKNK 55 (219)
T ss_dssp ------CGGGCCHHHHHH---HHHHHHHHH-------------CTTTCCHHHHHHHH---------TSCHHHHHTTCSSH
T ss_pred CCcchhhHHHHHHHHHHH---HHHHHHHHh-------------CcccCCHHHHHHHh---------CCCchHHhhcCCCH
Confidence 554444445566777654 333444444 99999999987754 56778999999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 56 e~ 57 (219)
T 2w53_A 56 SE 57 (219)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 266
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=41.11 E-value=5.6 Score=30.27 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 7 LSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
.+.+++|.+||+ .-...|.-+ |....||.||-... -|+.+++|+-|||+..
T Consensus 6 ~~~~~~r~~Il~---aA~~lf~~~-------------G~~~~s~~~IA~~a---------Gvs~gtlY~yF~sKe~ 56 (194)
T 2nx4_A 6 VDHDERRRSITA---AAWRLIAAR-------------GIEAANMRDIATEA---------GYTNGALSHYFAGKDE 56 (194)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHH-------------CTTTCCHHHHHHHH---------TCCHHHHHHHCSSHHH
T ss_pred CCHHHHHHHHHH---HHHHHHHhc-------------CcccCCHHHHHHHh---------CCCcchHHHhCcCHHH
Confidence 456777777654 344445444 99999999988754 4677899999999764
No 267
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=40.79 E-value=9.2 Score=30.72 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=24.4
Q ss_pred cCCccchHHHHHHHhhhcCccccc-cccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE-KIGT 70 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E-KiGt 70 (208)
-||+-.+|.+.|+.|+.+|+|... ..||
T Consensus 41 ~gVSR~tVReAL~~L~~eGlv~~~~g~G~ 69 (239)
T 1hw1_A 41 IGVTRTTLREVLQRLARDGWLTIQHGKPT 69 (239)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHCCcEEEecCCCc
Confidence 699999999999999999999875 3444
No 268
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=40.67 E-value=49 Score=23.98 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=34.4
Q ss_pred HHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 13 RTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 13 r~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
...|+.++.. ...-++. ||-+ .-||++.+|-.+|+.|++.|+|...+.
T Consensus 10 L~~i~~l~~~-~~~~~~~---ela~----~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 10 IEQIYMLIEE-KGYARVS---DIAE----ALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHHHHH-HSSCCHH---HHHH----HHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHhh-cCCCCHH---HHHH----HhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 3344444433 3346677 6544 269999999999999999999988754
No 269
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=40.34 E-value=99 Score=22.08 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 90 EKITAEIEDVTKELAQNNEALEKSMVG-RGDSKNREDFLQEVGNISKELELINKEL 144 (208)
Q Consensus 90 ~~l~~~i~~~~~~i~~l~~~ie~~~~~-r~~~~eR~~ll~~l~~L~~~~~~l~~el 144 (208)
..++.-+++++..+.+|.+.|.-.... ..+-..|...+.+ ++.++..++.++
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~---l~~~i~~lk~~~ 91 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKN---IKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345555555555666666666664443 2233456665543 445555555554
No 270
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=40.14 E-value=63 Score=25.44 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=24.7
Q ss_pred cCCccchHHHHHHHhhhcCccccc-ccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE-KIGTS 71 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E-KiGts 71 (208)
-||+..+|.|.|+.|..+|+|... .-|+.
T Consensus 45 lgVSRtpVREAL~~L~~eGlv~~~~~~G~~ 74 (218)
T 3sxy_A 45 LGISFTPVRDALLQLATEGLVKVVPRVGFF 74 (218)
T ss_dssp HTCCHHHHHHHHHHHHHHTSEEEETTTEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEeCCCceE
Confidence 699999999999999999999865 34443
No 271
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=40.08 E-value=33 Score=26.99 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=38.1
Q ss_pred HhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 19 LFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 19 ~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
+-+=+.--+|-+ ||.....+ +|+.+..|..||..|...|+|+=+.-
T Consensus 25 l~~Ls~r~~S~~---EL~~KL~~-kg~~~~~ie~vl~~L~~~g~ldD~rf 70 (177)
T 3e3v_A 25 LNYLSYQLRTRK---EVEDKLRS-LDIHEDYISEIINKLIDLDLINDKNY 70 (177)
T ss_dssp HHHHHSSCCCHH---HHHTTSGG-GTCCHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHhccccccHH---HHHHHHHH-cCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 333456678888 99988887 89999999999999999999987654
No 272
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=39.97 E-value=58 Score=26.78 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2296 124 EDFLQEVGNISKELELINKE 143 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~e 143 (208)
..+.++++++-....+.+.+
T Consensus 156 ~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 156 NDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444
No 273
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.82 E-value=1e+02 Score=27.62 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 91 KITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 91 ~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
.|.+++..+++++.++++.++.... +...+-++|.+...+...|..++..++.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~------~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAA------ELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444444444444444322 3344445566667777778888877765
No 274
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=39.75 E-value=1e+02 Score=22.19 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Q psy2296 150 NDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCKN 185 (208)
Q Consensus 150 ~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~~~ 185 (208)
.||..++ ..+..+..-++...-|++-+.+|+..
T Consensus 55 GD~~s~~---~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 55 GDPASLE---PQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp CCGGGSH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888874 45556666777788889999999864
No 275
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=39.72 E-value=86 Score=21.23 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHh
Q psy2296 124 EDFLQEVGNISKELELINKELEK-YKNNDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~-~~~~Dp~~i~~~~~~~~~~k~aan 170 (208)
.++..++.+|+.++-.|.-+... =+-.+|..|...+.++...+.-++
T Consensus 15 ~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~ 62 (71)
T 1vq8_V 15 AEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHH
Confidence 55666677777777776655544 122468899988888887776543
No 276
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=39.69 E-value=1.2e+02 Score=22.93 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy2296 92 ITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINK 142 (208)
Q Consensus 92 l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~ 142 (208)
+..+|..+..++..++..+..+ ..|+|.+-=.....+.+.|.+++..++.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa-~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADL-SLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-CTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443 4566666556666666666666666554
No 277
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=39.63 E-value=2e+02 Score=25.47 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy2296 151 DPDTLKLIENTAQRAKEAANRWTDNLFS 178 (208)
Q Consensus 151 Dp~~i~~~~~~~~~~k~aanrwTDNI~~ 178 (208)
||+..+....++..+...+..+...+..
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~l~~ 94 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKELER 94 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666666666665554443
No 278
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.54 E-value=15 Score=28.03 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=36.8
Q ss_pred CCCC-CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 1 MSKK-KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 1 Mskk-kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
|+++ +.-..++.|.+||+ .-...|.-+ |...-||.||.... -|+.+++|+-|||
T Consensus 1 m~~~~~~~~~~~~r~~Il~---aA~~lf~~~-------------G~~~~s~~~IA~~a---------Gvsk~tlY~hF~s 55 (200)
T 2hyj_A 1 MSPRRSAAEAQATRGRILG---RAAEIASEE-------------GLDGITIGRLAEEL---------EMSKSGVHKHFGT 55 (200)
T ss_dssp -------CTHHHHHHHHHH---HHHHHHHHH-------------CGGGCCHHHHHHHH---------TCCHHHHHTTCSS
T ss_pred CCCCcccchhhccHHHHHH---HHHHHHHHc-------------CcccCCHHHHHHHh---------CCChHHHHHHcCC
Confidence 6553 33456777877764 334444444 99999999987654 4677889999999
Q ss_pred hhh
Q psy2296 80 KAS 82 (208)
Q Consensus 80 ~~~ 82 (208)
+..
T Consensus 56 Ke~ 58 (200)
T 2hyj_A 56 KET 58 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 279
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.35 E-value=7.9 Score=29.90 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|++ ..+.+++|.+||+ .....|.-+ |+...||.||.+.. -|+.+.+|+.|||+
T Consensus 1 Mp~--~~~~~~~r~~Il~---aA~~lf~~~-------------G~~~~s~~~IA~~a---------Gvs~gtlY~yF~sK 53 (209)
T 2gfn_A 1 VPK--IVDHDERRRALAD---AVLALIARE-------------GISAVTTRAVAEES---------GWSTGVLNHYFGSR 53 (209)
T ss_dssp -----CCCCCHHHHHHHH---HHHHHHHHH-------------CGGGCCHHHHHHHH---------SSCHHHHHHHTSSH
T ss_pred CCC--cccHHHHHHHHHH---HHHHHHHHh-------------CcccCCHHHHHHHH---------CCCcchHHhcCCCH
Confidence 653 3566788888764 333444444 99999999988764 46778899999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 54 e~ 55 (209)
T 2gfn_A 54 HE 55 (209)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 280
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.06 E-value=1.2e+02 Score=22.59 Aligned_cols=65 Identities=9% Similarity=0.204 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKN-REDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~e-R~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
.......|......+......|+..++.....-.+.++ +..+...-.+|...+..+...++...+
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777776666543323333 455556666777777777777766654
No 281
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=39.06 E-value=79 Score=23.11 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
++..+.++.|.+||+-.. ..|.- .|+...||.+|-... .|..+++|+-|||+..
T Consensus 10 ~~~~~~~~~r~~Il~aa~---~l~~~-------------~G~~~~s~~~Ia~~a---------gvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 10 RTRLSPLKRKQQLMEIAL---EVFAR-------------RGIGRGGHADIAEIA---------QVSVATVFNYFPTRED 63 (206)
T ss_dssp CCCCCHHHHHHHHHHHHH---HHHHH-------------SCCSSCCHHHHHHHH---------TSCHHHHHHHCCSHHH
T ss_pred CCcCCHHHHHHHHHHHHH---HHHHh-------------cCcccccHHHHHHHh---------CCCHHHHHHHcCCHHH
Confidence 456788999999877433 23322 499999999987654 5677889999999754
No 282
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.94 E-value=79 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2296 126 FLQEVGNISKELELINKELEKY 147 (208)
Q Consensus 126 ll~~l~~L~~~~~~l~~el~~~ 147 (208)
+..+...|...+..|..|+..|
T Consensus 48 l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666777777777776654
No 283
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.66 E-value=1e+02 Score=21.76 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 125 DFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 125 ~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
.++++++.|+-.+.++..|-.+|..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEk 47 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEW 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666555553
No 284
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=38.54 E-value=13 Score=27.95 Aligned_cols=54 Identities=19% Similarity=0.389 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
+++-..+++|.+|++-.. ..|. . .|+...||.||.+.. .|+.+++|.-|||+..
T Consensus 11 ~~~~~~~~~r~~Il~aa~---~l~~------------~-~G~~~~s~~~Ia~~a---------gvs~~t~Y~~F~sK~~ 64 (212)
T 1pb6_A 11 KRSRAVSAKKKAILSAAL---DTFS------------Q-FGFHGTRLEQIAELA---------GVSKTNLLYYFPSKEA 64 (212)
T ss_dssp ----CHHHHHHHHHHHHH---HHHH------------H-HCTTTCCHHHHHHHT---------TSCHHHHHHHSSSHHH
T ss_pred cccCchHHHHHHHHHHHH---HHHH------------H-cCcchhhHHHHHHHH---------CCChhHHHHhCCCHHH
Confidence 455667788888876432 2222 2 488899999987653 5778899999999754
No 285
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.70 E-value=1.1e+02 Score=21.85 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy2296 128 QEVGNISKELE 138 (208)
Q Consensus 128 ~~l~~L~~~~~ 138 (208)
.++..++.+..
T Consensus 39 ~el~~le~E~~ 49 (96)
T 3q8t_A 39 ENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 286
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=37.46 E-value=1.6e+02 Score=23.52 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
++.++..|+.....+++.+..|+..++..+.+| ...-+...+|+.++..|..+++...
T Consensus 53 Lq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r------~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 53 LQERNRILENSKSQTDKDYYQLQAILEAERRDR------GHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666677777777776666544 2222333344444444444444433
No 287
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.30 E-value=99 Score=21.20 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 95 EIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 95 ~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
+.+..+..+..++..+..++. +-+..+.++++|-.-.-.|..|+..|..
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~------e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRA------RMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444432 3345577788887778888888888875
No 288
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=37.02 E-value=58 Score=23.99 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.9
Q ss_pred cCCccchHHHHHHHhhhcCcccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
-||+..+|-..|+.|.+.|+|....
T Consensus 64 l~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 64 LGVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred hCcCHHHHHHHHHHHHHCCCEEEec
Confidence 6999999999999999999997664
No 289
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=36.98 E-value=26 Score=30.46 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=36.4
Q ss_pred HHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccc
Q psy2296 13 RTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVES 65 (208)
Q Consensus 13 r~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~ 65 (208)
+.+||++++.... -+-. ||-+. .|++..||-.+++.|+++|+|..
T Consensus 18 ~~~il~~l~~~~~-~sr~---~la~~----~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 18 AGAVYRLIDQLGP-VSRI---DLSRL----AQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHSSCS-CCHH---HHHHH----TTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCC-cCHH---HHHHH----HCCCHHHHHHHHHHHHHCCcEEe
Confidence 4568998887543 5777 66543 79999999999999999999976
No 290
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=36.87 E-value=54 Score=28.34 Aligned_cols=35 Identities=6% Similarity=0.149 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy2296 120 SKNREDFLQEVGNISKELELINKELEKYKNNDPDT 154 (208)
Q Consensus 120 ~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~ 154 (208)
..+.+.+.++...|++++++|+++.++.....+++
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r 218 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAER 218 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 34566666666666666666666555555433333
No 291
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=36.78 E-value=39 Score=23.59 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccc----hhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCc
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEE----FFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGL 62 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~----~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDgl 62 (208)
|++++..|.|.|...+..++....+ -.++. ++ |.. -||++.||---+...-.+|.
T Consensus 1 M~~~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~---~v---a~~-~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 1 MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATIC---SI---APK-IGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH---HH---HHH-HTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccccccccccHH---HH---HHH-HCcCHHHHHHHHHHHHhccc
Confidence 8877889999988766555443211 14555 43 333 69999999998888766654
No 292
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=36.71 E-value=1.2e+02 Score=21.94 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=47.2
Q ss_pred HHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc----ccceeEeeccchhhHHHHH
Q psy2296 15 GLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI----GTSTYFWSFPNKASDRVDC 87 (208)
Q Consensus 15 ~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi----GtsN~YWsFps~~~~~~~~ 87 (208)
-||.++.+ ....|.|. ..|+. .. ..+|++-+|=-+|..|.++|+|..... |-..-|++.-......+..
T Consensus 17 ~IL~lL~~~p~~Gyei~--~~l~~-~g-~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~ 90 (116)
T 3hhh_A 17 LVLAIIQRKETYGYEIT--KILND-QG-FTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELAD 90 (116)
T ss_dssp HHHHHHHHSCBCHHHHH--HHHHT-TS-CSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHH--HHHHH-cC-CCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHH
Confidence 46676664 44566665 25665 22 247899999999999999999998763 3445677877766554433
No 293
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.60 E-value=76 Score=21.93 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=13.9
Q ss_pred CcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 61 GLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEAL 110 (208)
Q Consensus 61 glV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~i 110 (208)
|+...|-+|| ...++..+..-.++|......|.+++..|
T Consensus 11 ~~~~~~~mgt-----------i~eLq~~L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 11 GMASIEGRGS-----------LRDLQYALQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp --------CH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666676 34444444444444444444444444433
No 294
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=36.24 E-value=33 Score=28.76 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=44.5
Q ss_pred HHHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 13 RTGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 13 r~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
|+-|+.+|.. ...--.+. .|=.++.- -||+..+|-=-|--||.+|.+..+++|
T Consensus 6 rSlIlsll~g~~g~~i~~~---~Li~l~~~-~Gi~e~avRtAlsRL~~~G~L~~~~~G 59 (247)
T 3kfw_X 6 RSVVLSVLLGAHPAWATAS---ELIQLTAD-FGIKETTLRVALTRMVGAGDLVRSADG 59 (247)
T ss_dssp HHHHHHHHTTTTTSCBCHH---HHHHHHTT-TTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred ceeeEeeecCCCCCcccHH---HHHHHHHH-cCCChHHHHHHHHHHHHcCCeeccCCc
Confidence 5778887744 44566777 77777776 799999999999999999999999999
No 295
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=36.03 E-value=95 Score=22.49 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=46.7
Q ss_pred HHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc----ccceeEeeccchhhHHHHH
Q psy2296 15 GLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI----GTSTYFWSFPNKASDRVDC 87 (208)
Q Consensus 15 ~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi----GtsN~YWsFps~~~~~~~~ 87 (208)
.||.++.+ ...+|.|. .+|+....- .|++-+|=-.|..|.++|+|..... |-..-|++.-......+..
T Consensus 18 ~IL~lL~~~p~~gyel~--~~l~~~~~~--~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 18 YILKELVKRPMHGYELQ--KSMFETTGQ--ALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCD 91 (117)
T ss_dssp HHHHHHHHSCEEHHHHH--HHHHHHHSC--CCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHH--HHHHHHhCC--CCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHH
Confidence 46777754 56677765 256654432 4788999999999999999998875 3334556766665544333
No 296
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=35.92 E-value=33 Score=29.24 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=50.4
Q ss_pred HHHHHHh----hhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHH
Q psy2296 14 TGLLELF----HEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDR 84 (208)
Q Consensus 14 ~~il~~f----~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~ 84 (208)
+-|+.+| .....--.+. +|=.++.- -||+..+|-=-|.-|+.+|.+..++.|-.. |+++.......
T Consensus 26 Sli~tl~Gd~~~~~g~~i~~~---~Li~l~~~-~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~-~Y~Lt~~g~~~ 95 (266)
T 3l09_A 26 SVLVTCLGDVSRDGVIEVSGV---ALSSFVER-MGLQPQAMRVALHRLKRDGWVESRRLGRVG-FHRLSDSALTQ 95 (266)
T ss_dssp HHHHHHHHHHHHTTCCCEEHH---HHHHHHHH-TTCCHHHHHHHHHHHHHTTSEEEEEETTEE-EEEECHHHHHH
T ss_pred HHHHHHHHHHhccCCCcccHH---HHHHHHHH-cCCCchHHHHHHHHHHHCCCeeeeecCCcc-eEEECHHHHHH
Confidence 4566666 3334455667 77777766 799999999999999999999999999777 67776655443
No 297
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=35.52 E-value=89 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=28.6
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccc-eeEeeccch
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTS-TYFWSFPNK 80 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGts-N~YWsFps~ 80 (208)
-||+..+|-..|..|++.|+|.......- .+++++-..
T Consensus 47 lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~ 85 (146)
T 2f2e_A 47 LGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDK 85 (146)
T ss_dssp HCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHH
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECch
Confidence 49999999999999999999998764221 344455443
No 298
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=35.16 E-value=1.5e+02 Score=26.59 Aligned_cols=81 Identities=9% Similarity=0.164 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy2296 99 VTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLFS 178 (208)
Q Consensus 99 ~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aanrwTDNI~~ 178 (208)
+...+.+.-..+..+-..=.+...|..++.+-+.|-.....+...|..++. ....++....+.+|..+..|-.
T Consensus 42 l~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~-------~~n~~i~~~V~~iN~l~~qIa~ 114 (463)
T 2d4y_A 42 LSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDK-------QVNIAIGSSVAQINNYAKQIAN 114 (463)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554456678999999999999999999999999884 5666777888888988888888
Q ss_pred HHHHHHhh
Q psy2296 179 LKSWCKNK 186 (208)
Q Consensus 179 l~~~~~~k 186 (208)
|=.=|.+-
T Consensus 115 LN~qI~~~ 122 (463)
T 2d4y_A 115 LNDQISRM 122 (463)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777653
No 299
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=34.71 E-value=1e+02 Score=20.58 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Q psy2296 130 VGNISKELELINKELEKYK-NNDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCKN 185 (208)
Q Consensus 130 l~~L~~~~~~l~~el~~~~-~~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~~~ 185 (208)
-.+++..+..|...+..+. .|....-+.-......+..++.+|.+.+..+..+|.+
T Consensus 25 ~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (93)
T 4ioe_A 25 AGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKR 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666664 3666666666666667777777777777777666654
No 300
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=34.57 E-value=13 Score=31.21 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=23.1
Q ss_pred cCCccchHHHHHHHhhhcCccccc-cccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE-KIGT 70 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E-KiGt 70 (208)
-||+.+||...|+.|+++|+|... ..||
T Consensus 63 ~~vSr~tvr~Al~~L~~~G~i~~~~g~G~ 91 (272)
T 3eet_A 63 YGVSDTVALEARKVLMAEGLVEGRSGSGT 91 (272)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECCC--E
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEecCceE
Confidence 699999999999999999999764 3444
No 301
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=34.54 E-value=18 Score=28.15 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=35.1
Q ss_pred ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 23 KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 23 ~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
+.--||-+ ||.....+ +|+.+..|..||..|...|+|+=+.-
T Consensus 28 s~r~~s~~---EL~~KL~~-kg~~~e~Ie~vl~~l~~~g~ldD~rf 69 (162)
T 3dfg_A 28 VHREHSKK---ELNRKLQA-RGIEPEAAQAAVERLAGEGWQDDVRF 69 (162)
T ss_dssp HHSCCCHH---HHHHHHHH-TTCCHHHHHHHHHHHHHTTSCCHHHH
T ss_pred hchhhhHH---HHHHHHHh-cCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 44567777 88877777 79999999999999999999987753
No 302
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=34.35 E-value=49 Score=25.86 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhc----cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc
Q psy2296 11 EKRTGLLELFHEK----EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 11 EKr~~il~~f~~~----~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
.+...||+++.+. ...-+.+ ||-+. -|+++.+|...|+.|..+|+|..+
T Consensus 5 ~~q~~il~~I~~~~~~~g~~~s~~---eia~~----lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 5 ERQRKVLLFIEEFIEKNGYPPSVR---EIARR----FRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHH---HHHHH----cCCCcHHHHHHHHHHHHCCCEEec
Confidence 3666788877652 2345777 77543 599999999999999999999876
No 303
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=34.28 E-value=9.8 Score=28.02 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|+++..-..++.|.+|++-.. +.|.- .|+..-||.+|.... -|+.+.+|.-|||+
T Consensus 4 M~~~~~~~~~~~r~~Il~aa~---~lf~~-------------~G~~~~ti~~Ia~~a---------gvs~~t~Y~~F~sK 58 (156)
T 3ljl_A 4 MPKRSKEDTEITIQKIMDAVV---DQLLR-------------LGYDKMSYTTLSQQT---------GVSRTGISHHFPKK 58 (156)
T ss_dssp ----CCSHHHHHHHHHHHHHH---HHHHH-------------THHHHCCHHHHHHHH---------TCCHHHHHHHCSST
T ss_pred CccccchhhHhHHHHHHHHHH---HHHHH-------------hChhhcCHHHHHHHH---------CCCHHHHHHHCCCH
Confidence 565555567788888876432 23322 488888888886643 45677899999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 59 ~~ 60 (156)
T 3ljl_A 59 TD 60 (156)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 304
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=34.13 E-value=15 Score=30.04 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=22.3
Q ss_pred cCCccchHHHHHHHhhhcCccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
-||+.+||.+.|+.|+++|+|...
T Consensus 39 ~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 39 FEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCcEEEe
Confidence 699999999999999999999764
No 305
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=33.64 E-value=93 Score=23.58 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhh
Q psy2296 127 LQEVGNISKELELINKELEKYKN-NDPDTLKLIENTAQRAKEAANR 171 (208)
Q Consensus 127 l~~l~~L~~~~~~l~~el~~~~~-~Dp~~i~~~~~~~~~~k~aanr 171 (208)
-++++.|..++..++-.+..... .|++.|.+..+++..+...+++
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~ 54 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIAR 54 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777654 7899998887777666555444
No 306
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.96 E-value=64 Score=17.74 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2296 124 EDFLQEVGNISKELELINKEL 144 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el 144 (208)
.++-.+++.|++++..|.+.|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666554
No 307
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.94 E-value=1.3e+02 Score=21.38 Aligned_cols=51 Identities=8% Similarity=0.209 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy2296 120 SKNREDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 120 ~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aan 170 (208)
..-|.++..-+++|+..+..|..-+.-.+.++|..|..-++-+..+...++
T Consensus 35 ~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~ 85 (95)
T 2c5k_T 35 DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLD 85 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999888899988888877777776644
No 308
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=32.91 E-value=39 Score=27.48 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=36.9
Q ss_pred hhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc
Q psy2296 21 HEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI 68 (208)
Q Consensus 21 ~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi 68 (208)
+=+.--||-+ ||.....+ +|+.+..|..||..|.+.|+|+=+.-
T Consensus 70 ~Ls~r~~S~~---EL~~KL~~-kg~~~e~i~~vl~~L~~~g~ldD~rf 113 (221)
T 3d5l_A 70 YLSYQMRTES---DIVKKLKE-IDTPEEFVEPILKKLRGQQLIDDHAY 113 (221)
T ss_dssp HHTTSCCCHH---HHHHHHHH-TTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HhccccccHH---HHHHHHHh-cCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 3366778888 99887776 79999999999999999999976654
No 309
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=32.82 E-value=16 Score=29.86 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.1
Q ss_pred cCCccchHHHHHHHhhhcCccccc-cccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESE-KIGT 70 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~E-KiGt 70 (208)
-||+.+||...|+.|+++|+|... .-||
T Consensus 43 ~~vSr~tvr~Al~~L~~~G~i~~~~g~G~ 71 (236)
T 3edp_A 43 YSSSRTTIRRAVDLLVEEGLVVRKNGVGL 71 (236)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEECCceE
Confidence 699999999999999999999775 3444
No 310
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.68 E-value=1e+02 Score=27.11 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 86 DCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELE 145 (208)
Q Consensus 86 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~ 145 (208)
..-++.++++++.+.+++.+++..++ +.+++ .+...++.++++++..+++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIE----KRPEN---KKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HCTTC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hCccc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777776663 22222 3444555556666655555444
No 311
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=32.53 E-value=1.8e+02 Score=23.46 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=4.4
Q ss_pred cCccccc
Q psy2296 60 DGLVESE 66 (208)
Q Consensus 60 DglV~~E 66 (208)
+|++++.
T Consensus 93 nGiL~V~ 99 (219)
T 4e81_A 93 DGILHVS 99 (219)
T ss_dssp TCCEEEE
T ss_pred CCCEeee
Confidence 5776654
No 312
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=32.40 E-value=97 Score=19.63 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2296 128 QEVGNISKELELINKEL 144 (208)
Q Consensus 128 ~~l~~L~~~~~~l~~el 144 (208)
+.++.....+..++.++
T Consensus 40 ~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 40 EKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 313
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.38 E-value=47 Score=25.47 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=34.8
Q ss_pred HHhhhccchhhhcchHHHHhhcccc----cC-----CccchHHHHHHHhhhcCcccccc
Q psy2296 18 ELFHEKEEFFQLKLIIELEKLAPKE----KG-----IISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 18 ~~f~~~~~~f~lK~~~ElEK~~pK~----~G-----I~~~~VKdvlq~LVDDglV~~EK 67 (208)
.+-+=+.--||-+ ||.....+. .| +.+..|..||..|.+.|+|+=+.
T Consensus 11 Al~~Ls~r~~S~~---EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~r 66 (159)
T 3c1d_A 11 AVRILAVRDHSEQ---ELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSR 66 (159)
T ss_dssp HHHHHTTSCCCHH---HHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHhhcccccHH---HHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHH
Confidence 3334456677888 888765552 47 99999999999999999997654
No 314
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=32.20 E-value=1.4e+02 Score=21.27 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 122 NREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 122 eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
.|..+-.+|......+..|+.+|..+.
T Consensus 57 ~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 57 SLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777778888888888888887764
No 315
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=32.13 E-value=13 Score=28.23 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhH
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASD 83 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~ 83 (208)
+++|.+||+- -...|.-| |....||.||.... -|+.+++|+-|||+..-
T Consensus 9 ~~~r~~Il~a---A~~lf~~~-------------G~~~~s~~~Ia~~A---------gvskgt~Y~yF~sKe~L 57 (197)
T 2f07_A 9 SGKYEKILQA---AIEVISEK-------------GLDKASISDIVKKA---------GTAQGTFYLYFSSKNAL 57 (197)
T ss_dssp CSHHHHHHHH---HHHHHHHH-------------CTTTCCHHHHHHHH---------TSCHHHHHHHCSSSTTH
T ss_pred hHHHHHHHHH---HHHHHHHh-------------CcccCCHHHHHHHh---------CCCchHHHHhCCCHHHH
Confidence 4577776553 33344444 99999999987754 46778999999998653
No 316
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=31.95 E-value=52 Score=21.80 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy2296 123 REDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAA 169 (208)
Q Consensus 123 R~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aa 169 (208)
-+++.+++.+|+.++-.|.-+...=+-.+|..|...+.++...+.-+
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl 57 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLL 57 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTCCSCGGGTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776665533356999999999888776544
No 317
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.87 E-value=1.4e+02 Score=21.17 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALEKSMV 115 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~ 115 (208)
......+..|...+..+..++..+...+.....
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556666777777777777777777777655
No 318
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.57 E-value=50 Score=26.07 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
-|||..+ -.+|.+++... --+.+ ||-.. .||...+|--+|+.|+..|+|......
T Consensus 44 ~gLt~~q--~~iL~~L~~~~-~~t~~---eLa~~----l~i~~stvs~~l~~Le~~GlV~r~~~~ 98 (207)
T 2fxa_A 44 YDLNINE--HHILWIAYQLN-GASIS---EIAKF----GVMHVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp GTCCHHH--HHHHHHHHHHT-SEEHH---HHHHH----TTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred cCCCHHH--HHHHHHHHHCC-CcCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 4666665 34566665543 35666 66554 589999999999999999999987763
No 319
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.34 E-value=57 Score=18.37 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcC
Q psy2296 3 KKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDG 61 (208)
Q Consensus 3 kkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDg 61 (208)
+++.+|.+++..- +..+.+. ++.+ |+- +..||+..||.-++...-..|
T Consensus 2 R~~~l~~~~~~~i-~~~~~~g---~s~~---~IA----~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 2 RGSALSDTERAQL-DVMKLLN---VSLH---EMS----RKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp CSCCCCHHHHHHH-HHHHHTT---CCHH---HHH----HHHTCCHHHHHHHHHCSTTTT
T ss_pred CCCCCCHHHHHHH-HHHHHcC---CCHH---HHH----HHHCcCHHHHHHHHhhHHhcC
Confidence 3467888876544 4444332 4677 653 336999999999887654433
No 320
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.00 E-value=2.1e+02 Score=23.19 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=13.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhcCC
Q psy2296 165 AKEAANRWTDNLFSLKSWCKNKFGL 189 (208)
Q Consensus 165 ~k~aanrwTDNI~~l~~~~~~k~~~ 189 (208)
..+....=..||.++.+-+.--.|+
T Consensus 60 ~~~~~~~~~e~i~i~~DL~e~LTGl 84 (190)
T 4emc_A 60 LKTQTSQQAENSEVIKDLYEYLCNV 84 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred hhhHHHHHHHhhhHHHHHHHHccCc
Confidence 3333344456777766665544444
No 321
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.94 E-value=88 Score=18.73 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALE 111 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie 111 (208)
+++..+.++|-.+...++.++..|+.-+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34455555555555555555555554443
No 322
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=30.93 E-value=2.1e+02 Score=23.04 Aligned_cols=7 Identities=43% Similarity=0.772 Sum_probs=4.8
Q ss_pred cCccccc
Q psy2296 60 DGLVESE 66 (208)
Q Consensus 60 DglV~~E 66 (208)
+|+++++
T Consensus 90 nGiL~V~ 96 (227)
T 1u00_A 90 DGLLSVT 96 (227)
T ss_dssp TCCEEEE
T ss_pred CCcEEEE
Confidence 6777764
No 323
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=30.08 E-value=32 Score=25.82 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=32.8
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
.||++..|..|++.|+.-|+|.+-+ |.+-|.-+-|....
T Consensus 33 ~~i~~~~l~kIl~~L~~aGlv~s~r-G~GGy~Lar~p~~I 71 (145)
T 1xd7_A 33 VNTNPVVVRRMISLLKKADILTSRA-GVPGASLKKDPADI 71 (145)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEECCS-SSSSCEESSCGGGC
T ss_pred HCcCHHHHHHHHHHHHHCCceEeec-CCCCceecCCHHHC
Confidence 7999999999999999999999887 66667777666543
No 324
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=29.99 E-value=37 Score=29.92 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=36.2
Q ss_pred HHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc
Q psy2296 13 RTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 13 r~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
+.+||+.++... .-+-. ||-+ ..|++..||-.++..|+++|+|...
T Consensus 41 ~~~il~~l~~~~-~~sr~---ela~----~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 41 AGRVYKLIDQKG-PISRI---DLSK----ESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHC-SBCHH---HHHH----HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC-CcCHH---HHHH----HHCCCHHHHHHHHHHHHHCCCEEec
Confidence 456888888754 45666 6644 3799999999999999999999764
No 325
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=29.83 E-value=28 Score=26.19 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=38.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|++++.-..+++|.+|| ....+.|.-+ |....||.||.... -|+.+++|+-|||+
T Consensus 2 M~~~~~~~~~~~r~~Il---~aA~~lf~~~-------------G~~~~s~~~IA~~a---------Gvs~~tlY~~F~sK 56 (197)
T 2hyt_A 2 MVRRTRAEMEETRATLL---ATARKVFSER-------------GYADTSMDDLTAQA---------SLTRGALYHHFGDK 56 (197)
T ss_dssp ---CCHHHHHHHHHHHH---HHHHHHHHHH-------------CTTTCCHHHHHHHH---------TCCTTHHHHHHSSH
T ss_pred CCchHHHhHHHHHHHHH---HHHHHHHHHh-------------CcccCCHHHHHHHh---------CCCHHHHHHHcCCH
Confidence 66543334455565554 4445555555 99999999988764 57888999999997
Q ss_pred hhH
Q psy2296 81 ASD 83 (208)
Q Consensus 81 ~~~ 83 (208)
..-
T Consensus 57 e~L 59 (197)
T 2hyt_A 57 KGL 59 (197)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 326
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=29.80 E-value=3e+02 Score=24.59 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy2296 150 NDPDTLKLIENTAQRAKEAANRWTDNLF 177 (208)
Q Consensus 150 ~Dp~~i~~~~~~~~~~k~aanrwTDNI~ 177 (208)
.||+.+..+...+..+.....++...+.
T Consensus 261 ~d~~~l~~i~~rl~~l~~l~~k~~~~~~ 288 (517)
T 4ad8_A 261 ADPEALDRVEARLSALSKLKNKYGPTLE 288 (517)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3565555555444444333333333333
No 327
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.54 E-value=1.4e+02 Score=22.48 Aligned_cols=73 Identities=7% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHH
Q psy2296 20 FHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDV 99 (208)
Q Consensus 20 f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~ 99 (208)
++...++..|. -|-.+ +..|++...|++++...-+.+ .-+......+...+..+.++++.+
T Consensus 40 ~Y~~~dl~~l~---~I~~l--r~~G~sL~eIk~~l~~~~~~~--------------~~~~~~~~~L~~~~~~l~~~i~~L 100 (142)
T 3gp4_A 40 KFGAEDLRWIL---FTRQM--RRAGLSIEALIDYLALFREGE--------------HTLEARAELLKKQRIELKNRIDVM 100 (142)
T ss_dssp CBCHHHHHHHH---HHHHH--HHTTCCHHHHHHHHHHHHHCG--------------GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHH---HHHHH--HHcCCCHHHHHHHHHHHhccC--------------CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q psy2296 100 TKELAQNNEALE 111 (208)
Q Consensus 100 ~~~i~~l~~~ie 111 (208)
+.....+...++
T Consensus 101 ~~~~~~L~~~i~ 112 (142)
T 3gp4_A 101 QEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 328
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=29.48 E-value=17 Score=27.27 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhH
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASD 83 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~ 83 (208)
++....+++|.+||+-. ...|.- .|. .-||.||-... -|+.+++|+-|||+..-
T Consensus 9 ~~~~~~~~~r~~Il~aA---~~lf~~-------------~G~-~~s~~~Ia~~a---------gvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 9 PKRADARRNYDRIIEAA---AAEVAR-------------HGA-DASLEEIARRA---------GVGSATLHRHFPSRWGL 62 (199)
T ss_dssp ---CHHHHHHHHHHHHH---HHHHHH-------------HGG-GCCHHHHHHHH---------TCCHHHHHHHCSSHHHH
T ss_pred ccccchHHHHHHHHHHH---HHHHHh-------------cCC-CCCHHHHHHHh---------CCchHHHHHHCCCHHHH
Confidence 34456677788876632 233333 388 78888887653 46778899999997643
No 329
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.20 E-value=38 Score=23.29 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=32.1
Q ss_pred HHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccc
Q psy2296 14 TGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVE 64 (208)
Q Consensus 14 ~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~ 64 (208)
..|++++.+.. .-++. ||-+ . -||+++||.--|..|.+.|+|.
T Consensus 5 ~~Il~~L~~~g-~vsv~---eLa~---~-l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRG-RMEAA---QISQ---T-LNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSC-SBCHH---HHHH---H-TTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcC-CCcHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCEE
Confidence 46777776543 44555 5433 3 5999999999999999999984
No 330
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.15 E-value=2e+02 Score=22.24 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2296 122 NREDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWC 183 (208)
Q Consensus 122 eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~ 183 (208)
.-+..++++.+|+.++.....++. +.+.+....+..+.+++...+|++...+.+.
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~-------~~v~eae~ll~~v~~~l~~ia~~~l~~r~~~ 140 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKI-------EAIKKKEKLLRHVDSLIEDFVDGIANSKKST 140 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTCCCC-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 346778889999999999999884 4667778888888899999999987766553
No 331
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.80 E-value=1.1e+02 Score=19.02 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNE 108 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~ 108 (208)
..+.+.+..++|..++.+..+|++
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554443
No 332
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=28.66 E-value=72 Score=24.32 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhH
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASD 83 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~ 83 (208)
++-..++.|.+||+- ....|.- .|...-||.||-... -|+.+.+|+-|||+..-
T Consensus 29 ~~~~~~~~r~~Il~a---A~~lf~~-------------~G~~~~t~~~IA~~A---------Gvs~~tlY~~F~sKe~L 82 (221)
T 3g7r_A 29 AARTPSEARARLLGT---ATRIFYA-------------EGIHSVGIDRITAEA---------QVTRATLYRHFSGKDDL 82 (221)
T ss_dssp -----CHHHHHHHHH---HHHHHHH-------------HCSTTSCHHHHHHHH---------TCCHHHHHHHCSSHHHH
T ss_pred ccCcchhHHHHHHHH---HHHHHHH-------------hCcccCCHHHHHHHh---------CCCHHHHHHHCCCHHHH
Confidence 334456677777653 3333433 499999999987653 46778999999997653
No 333
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=28.63 E-value=31 Score=25.06 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.7
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
.|+...||.||-... -|+.+++|+-|||+..
T Consensus 20 ~G~~~~t~~~Ia~~a---------gvs~~t~Y~~F~sK~~ 50 (170)
T 3egq_A 20 KPPHEVSIEEIAREA---------KVSKSLIFYHFESKQK 50 (170)
T ss_dssp SCGGGCCHHHHHHHH---------TSCHHHHHHHCSSHHH
T ss_pred cCCccCcHHHHHHHh---------CCCchhHHHHcCCHHH
Confidence 599999999987765 4688899999999764
No 334
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.58 E-value=1.2e+02 Score=19.52 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2296 124 EDFLQEVGNISKELELINK 142 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~ 142 (208)
..|-.++..|+.++..|+.
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555544443
No 335
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.46 E-value=63 Score=29.05 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCChhHHHHHHHHHHHH
Q psy2296 82 SDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVG-RGDSKNREDFLQEVGNIS 134 (208)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~-r~~~~eR~~ll~~l~~L~ 134 (208)
...+...+.++.+.++++..++.+++..++..... .....+|..+-+++.+|+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35566667777777777777777766666655432 223345666666666654
No 336
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=28.45 E-value=62 Score=25.87 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=22.3
Q ss_pred cCCccchHHHHHHHhhhcCcccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVES 65 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~ 65 (208)
-||+..+|.|.|+.|..+|+|.+
T Consensus 38 lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 38 LGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCeEe
Confidence 69999999999999999999998
No 337
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.38 E-value=1.6e+02 Score=20.80 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 84 RVDCKLEKITAEIEDVTKELAQNNEALEKSMV 115 (208)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~ 115 (208)
..+.++..+..++..++..+.++...++....
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444555555555555555555554443
No 338
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=28.29 E-value=47 Score=24.96 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=42.6
Q ss_pred HHHHHhhhc--cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 15 GLLELFHEK--EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 15 ~il~~f~~~--~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
++|-++... ....+.+ || |.. .||++..|..+++.|..-|+|.+-+=-.+-|+-+=|....
T Consensus 15 ~~L~~La~~~~~~~~s~~---~I---A~~-~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~I 77 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLK---SI---AEE-NNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEI 77 (143)
T ss_dssp HHHHHHHTTTTSCCEEHH---HH---HHH-TTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGGC
T ss_pred HHHHHHHhCCCCCCcCHH---HH---HHH-HCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcccC
Confidence 345555432 2467777 55 333 7999999999999999999999865444567666665543
No 339
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=28.21 E-value=1.4e+02 Score=29.31 Aligned_cols=77 Identities=9% Similarity=0.004 Sum_probs=46.0
Q ss_pred ccceeEeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 69 GTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSM-VGRGDSKNREDFLQEVGNISKELELINKELEKY 147 (208)
Q Consensus 69 GtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~-~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 147 (208)
+...+|=.+ ...........+|.+++..+++.+..++..+.... ..+.+.+-.+.--+++.+++.+++.+++.|+.+
T Consensus 784 ~~~~~~~~~--~~~~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 784 PRVTARMPL--EGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861 (862)
T ss_dssp SSEEEEEEC--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEe--ccccCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555433 33444566677788888888888877776665432 123233334444455667777777777777654
No 340
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=28.16 E-value=1.9e+02 Score=21.69 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
....++.|.+++..+.+.-. .++...+... +.....|....++...+..--.++....+
T Consensus 7 i~~~l~~Leae~q~L~~~E~---qry~~eka~A---E~A~~~La~~~~l~~~i~er~~~i~~~~~ 65 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQEE---ARFNEERAQA---DAARQALAQNEQVYNELSQRAQRLQAEAN 65 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555533322 2333332221 34455666666666666666666666554
No 341
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=28.11 E-value=27 Score=24.22 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.1
Q ss_pred CCccchHHHHHHHhhhcCcccc
Q psy2296 44 GIISQSVKEILQSLVDDGLVES 65 (208)
Q Consensus 44 GI~~~~VKdvlq~LVDDglV~~ 65 (208)
.|+...+++.|+.||.||.+.+
T Consensus 44 ~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 44 RITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC
T ss_pred cCCHHHHHHHHHHHHhCCeEEE
Confidence 3678999999999999998864
No 342
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.03 E-value=1.3e+02 Score=24.20 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy2296 124 EDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aan 170 (208)
++|.++|.+|++++-.|.-+...=+-.+|..|...++++...+.-++
T Consensus 76 eEL~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLr 122 (173)
T 3bbo_Z 76 EQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKR 122 (173)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555544333567788877777777666443
No 343
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=27.92 E-value=1.6e+02 Score=22.29 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 124 EDFLQEVGNISKELELINKELEK 146 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~ 146 (208)
+.+++++.++++++++++.++..
T Consensus 35 ~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 344
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=27.88 E-value=85 Score=25.29 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.5
Q ss_pred cCCccchHHHHHHHhhhcCcccccc-ccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEK-IGT 70 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EK-iGt 70 (208)
-||+..+|.|.|+.|..+|||.... -|+
T Consensus 61 lgVSRtpVREAL~~L~~eGlv~~~~~~G~ 89 (239)
T 2hs5_A 61 LDVSRNTVREAFQILIEDRLVAHELNRGV 89 (239)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEeCCCee
Confidence 6999999999999999999998763 343
No 345
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=27.86 E-value=42 Score=23.77 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=33.7
Q ss_pred HHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 14 TGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 14 ~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
..|++++.+.. .-++. ||-+ . -||+++||.--|..|...|+|.-..
T Consensus 5 ~~Il~~L~~~g-~vsv~---eLA~---~-l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQG-RMEAK---QLSA---R-LQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSC-SEEHH---HHHH---H-TTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcC-CCcHH---HHHH---H-HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45777776543 44555 5433 3 5999999999999999999987653
No 346
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=27.62 E-value=1.3e+02 Score=22.73 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy2296 124 EDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANR 171 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aanr 171 (208)
++|.++|.+|+.++-.|.-+...=+-.+|..|...+.++...+..++.
T Consensus 17 eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~e 64 (124)
T 3iz5_c 17 DDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINA 64 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777666554334688999999888888776653
No 347
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=27.52 E-value=1.4e+02 Score=26.77 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=36.7
Q ss_pred Eeeccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 74 FWSFPNKAS--DRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 74 YWsFps~~~--~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
+|+=|..+. .+....+..+-..+..+.....++.+..+-+.....|.+-+....+++..|..++..+..+|..+-
T Consensus 38 ~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~~lL 114 (371)
T 1zbt_A 38 VVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLL 114 (371)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677654332 222333444444555555555555544443322123445577788889999999999998877654
No 348
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=27.24 E-value=58 Score=25.90 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHH
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDC 87 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~ 87 (208)
-|..|.+.+....-..--| |.. .-|--++|.--.|--++|||.+-|.|. |..-=.-|||.+-++...=++.
T Consensus 8 nR~~IYe~LFkeGV~VaKK---D~~-kHpel~~vpNL~ViKamqSLkSRGyVk-EqFaWrhyYw~LTnEGIeYLR~ 78 (162)
T 2xzm_7 8 TKIRIYKQLLQDGVFVLKK---DFE-GHHEETGVPNLHCYILVRSLKDRGFLE-EIFNWGFTYYYLNKEGCEYLKT 78 (162)
T ss_dssp HHHHHHHHHHHHTEEEEES---CSS-SBCTTTCCBHHHHHHHHHHHHHHTSEE-EEEETTEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcEEEec---ccc-CCCcccCcCcHHHHHHHhccccccccc-ceeeeEEEEEEEchHHHHHHHH
Confidence 4666777666644333333 333 122224677788999999999999986 4445567999998877654443
No 349
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.15 E-value=1.5e+02 Score=22.84 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 99 VTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKEL 144 (208)
Q Consensus 99 ~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el 144 (208)
...++..|...+..++. -|...-.+...+..+++.|...|
T Consensus 44 ~~~e~~~L~~~l~eE~~------~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENE------LRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHTHHHHHHHTTS------HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333 34444445555555555555544
No 350
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=26.95 E-value=2e+02 Score=21.52 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=10.2
Q ss_pred CHHHHhhhcCCCCCC
Q psy2296 190 EETALNKHFSIPEEM 204 (208)
Q Consensus 190 ~~~~i~~~f~Ip~d~ 204 (208)
.-..+=+.||||.++
T Consensus 96 Tm~~mLk~L~Id~~l 110 (122)
T 3viq_A 96 TMSMFLNQFGVPVHL 110 (122)
T ss_dssp CHHHHHHHTTCCTTT
T ss_pred cHHHHHHHcCCCHHH
Confidence 345666788888763
No 351
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.93 E-value=2.7e+02 Score=24.38 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=3.8
Q ss_pred hhhHHHHHHH
Q psy2296 80 KASDRVDCKL 89 (208)
Q Consensus 80 ~~~~~~~~~~ 89 (208)
++......++
T Consensus 373 eal~~~~~~i 382 (471)
T 3mq9_A 373 EALKDAQTRI 382 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 352
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=26.73 E-value=5.9 Score=29.59 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=25.5
Q ss_pred CCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 44 GIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELA 104 (208)
Q Consensus 44 GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~ 104 (208)
-|+.|+|+|+.+-| - | +|.+....++..--.++....+...+..
T Consensus 12 ~Lv~m~v~elN~~L--~--------~-------Ls~~e~~~lK~~RR~lKNR~yAq~CR~r 55 (107)
T 3a5t_A 12 ELVTMSVRELNQHL--R--------G-------LSKEEIIQLKQRRRTLKNRGYAASCRVK 55 (107)
T ss_dssp HHHHSCHHHHHHTT--T--------T-------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHH--h--------C-------CCHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35678888888876 1 2 5565555555555555555544444333
No 353
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=26.57 E-value=1.1e+02 Score=18.21 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEAL 110 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~i 110 (208)
+.++....+++|++++.+-..|+++|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 45566667777777777777766665
No 354
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.54 E-value=2.1e+02 Score=25.80 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 121 KNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 121 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
.+|..++.++++|+.+...+.+++.++..
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~ 66 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRK 66 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47889999999999999999999988655
No 355
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=26.35 E-value=74 Score=23.55 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhccchhhhcchHHHHhhccccc--CCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHH
Q psy2296 12 KRTGLLELFHEKEEFFQLKLIIELEKLAPKEK--GIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDC 87 (208)
Q Consensus 12 Kr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~--GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~ 87 (208)
.|..|.+.+....-..--| |. -+|+.. .|.--.|.-.+|||.+-|.|. |.--=.-|||.+-++...-++.
T Consensus 7 ~r~~IYe~LFkEGV~vakK---D~--~~~kH~el~vpNL~Vik~mqSLkSrGyVk-eqFaWrh~Yw~LTnEGieyLR~ 78 (105)
T 3u5c_K 7 DRNKIHQYLFQEGVVVAKK---DF--NQAKHEEIDTKNLYVIKALQSLTSKGYVK-TQFSWQYYYYTLTEEGVEYLRE 78 (105)
T ss_dssp HHHHHHHHHHHHSEEECCS---CS--CCSSCSSSSSCHHHHHHHHHHHHHTSSEE-EECTTTCCEEEECHHHHHHHHH
T ss_pred hHHHHHHHHhhCCcEEEEc---CC--CCCCCCccCccchhHHHHHhcccccceec-cEecceEEEEEEchhhHHHHHH
Confidence 5677777776654444444 44 234432 466678999999999999986 4555567899999987655443
No 356
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=26.33 E-value=1.3e+02 Score=19.29 Aligned_cols=41 Identities=2% Similarity=0.114 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHH
Q psy2296 100 TKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELIN 141 (208)
Q Consensus 100 ~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~ 141 (208)
...+..++.-|..++..| ..++=..|-..|.+|+.++..++
T Consensus 8 ~EQ~~~I~~~I~qAk~~~-r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 8 LQQIHNITSFIRQAKAAG-RMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666644 24555555566666666665554
No 357
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=26.00 E-value=35 Score=25.16 Aligned_cols=53 Identities=17% Similarity=0.404 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
+.+..++.|.+||+-- ...|.- .|+...||.+|-... .|+.+.+|+-|||+..
T Consensus 2 ~~~~~~~~r~~Il~aA---~~l~~~-------------~G~~~~t~~~IA~~A---------gvs~~tly~~F~sK~~ 54 (194)
T 3dpj_A 2 NAMVQAQTRDQIVAAA---DELFYR-------------QGFAQTSFVDISAAV---------GISRGNFYYHFKTKDE 54 (194)
T ss_dssp CSSSHHHHHHHHHHHH---HHHHHH-------------HCTTTCCHHHHHHHH---------TCCHHHHHHHCSSHHH
T ss_pred CccchhhHHHHHHHHH---HHHHHH-------------cCcccCCHHHHHHHH---------CCChHHHHHHcCCHHH
Confidence 4567788888887632 222222 499999999987654 5778899999999764
No 358
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=25.96 E-value=63 Score=27.56 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc
Q psy2296 10 EEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT 70 (208)
Q Consensus 10 eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt 70 (208)
.+.+.+||+++. ...+.+.+ ||-.. -||+..||.--|+.|-+.|++-...-|.
T Consensus 4 ~~r~~~Il~~L~-~~~~~s~~---eLa~~----l~vS~~ti~r~l~~L~~~G~~i~~~~g~ 56 (321)
T 1bia_A 4 NTVPLKLIALLA-NGEFHSGE---QLGET----LGMSRAAINKHIQTLRDWGVDVFTVPGK 56 (321)
T ss_dssp CHHHHHHHHHHT-TSSCBCHH---HHHHH----HTSCHHHHHHHHHHHHHTTCCCEEETTT
T ss_pred chHHHHHHHHHH-cCCCcCHH---HHHHH----HCCCHHHHHHHHHHHHhCCCcEEEecCC
Confidence 467889999996 45678888 76443 5999999999999999999987555554
No 359
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.87 E-value=1.7e+02 Score=20.32 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALEKSM 114 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~ 114 (208)
...+.++..+..++..++..+.++...++...
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666555555544
No 360
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=25.85 E-value=77 Score=24.00 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhhhccc----hhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc
Q psy2296 7 LSVEEKRTGLLELFHEKEE----FFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~----~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
.|++++....|.-+..... .++.+ + +|.- .|+++.+|--++..|.++|+|...
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~---~---lA~~-lg~sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHE---T---IANH-LGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHH---H---HHHH-HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHH---H---HHHH-hCCCHHHHHHHHHHHHHCCCEEeC
Confidence 3555555555554444322 23334 3 3443 799999999999999999999875
No 361
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=25.59 E-value=1.1e+02 Score=20.82 Aligned_cols=45 Identities=11% Similarity=0.240 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 95 EIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEK 146 (208)
Q Consensus 95 ~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 146 (208)
.++.+..+..+|..+|..+..+...+. ++..|+++.-.|+-++..
T Consensus 18 ~f~~L~~eH~~LD~~I~~le~~~~~~~-------~l~~LKk~KL~LKDeI~~ 62 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAEQQNASDA-------EVSHMKKQKLKLKDEIHS 62 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChH-------HHHHHHHHHHHhHHHHHH
Confidence 344444444555555554433322211 444444444444444433
No 362
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.57 E-value=87 Score=23.19 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q psy2296 83 DRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKE 136 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~ 136 (208)
..++..+...+.+++++..++.+++..++.+.. +|.=-...|..+.--
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk------ERDFYF~KLRdIEiL 54 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEI------EREFYFNKLRDIEIL 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777654 455444444444333
No 363
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=25.57 E-value=2.2e+02 Score=21.57 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHhhhc-cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccc
Q psy2296 6 GLSVEEKRTGLLELFHEK-EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIG 69 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~-~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiG 69 (208)
|||..+ -.+|.+++.. ...-+++ ||-.. .|+++.+|--+|..|+..|+|......
T Consensus 38 ~lt~~q--~~vL~~L~~~~~~~~t~~---eLa~~----l~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 38 ILTSRQ--YMTILSILHLPEEETTLN---NIARK----MGTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp SSCHHH--HHHHHHHHHSCGGGCCHH---HHHHH----HTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCHHH--HHHHHHHHhccCCCcCHH---HHHHH----HCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 455553 4566666653 4566777 77443 599999999999999999999987654
No 364
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=25.42 E-value=1.6e+02 Score=19.99 Aligned_cols=42 Identities=7% Similarity=0.231 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHhhh
Q psy2296 130 VGNISKELELINKELEKYKN---NDPDTLKLIENTAQRAKEAANRW 172 (208)
Q Consensus 130 l~~L~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~~k~aanrw 172 (208)
+..|..+...|..++..+.. .|+ .+..|+++--.+|+.+.+.
T Consensus 19 f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~l 63 (76)
T 1zhc_A 19 FDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSM 63 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHH
Confidence 45566666666666666655 355 8888888888888876553
No 365
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=25.34 E-value=2.8e+02 Score=24.76 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy2296 124 EDFLQEVGNISKELELINKELEKYK--NNDPDTLKLIENTAQRAKEAANRWTDNLF 177 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~~--~~Dp~~i~~~~~~~~~~k~aanrwTDNI~ 177 (208)
...+..+..+......+..-.+-+. +.||+..+....++..+...+..+...+.
T Consensus 56 ~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~ 111 (371)
T 1zbt_A 56 RETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLR 111 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444333333 35888777777777777776666554433
No 366
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=25.24 E-value=1.4e+02 Score=22.54 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhh
Q psy2296 124 EDFLQEVGNISKELELINKELEKY-KNNDPDTLKLIENTAQRAKEAANR 171 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~-~~~Dp~~i~~~~~~~~~~k~aanr 171 (208)
+++.++|.+|+.++-.|.-+...= +-.+|..|...+.++...+..++.
T Consensus 16 eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~e 64 (124)
T 4a17_U 16 EQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINE 64 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777776666554 224589999999999888876653
No 367
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=25.10 E-value=2.8e+02 Score=24.57 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=39.2
Q ss_pred EeeccchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 74 FWSFPNKASDRVDCKLEKITA---EIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 74 YWsFps~~~~~~~~~~~~l~~---~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
+|+=|..+ +.+-..+..|.. .+..+.....++.+..+-+ .|.+-+.....++..|..++..+..+|..+-
T Consensus 24 ~~~d~~~~-~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~----~D~e~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 24 VLKDKGRY-QSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL----DDPELKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp TTSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45544332 333344444443 3333333344433333222 1445577778889999999999998877654
No 368
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.03 E-value=1.3e+02 Score=18.85 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Q psy2296 153 DTLKLIENTAQRAKEAANRWTDNLFSLKSWCKN 185 (208)
Q Consensus 153 ~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~~~ 185 (208)
+-+++++++++.+|+.+ |.++.+.+++
T Consensus 15 EIL~E~RkElqK~K~EI------IeAi~~El~~ 41 (45)
T 1use_A 15 ELLEEVKKELQKVKEEI------IEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHh
Confidence 34555555555555543 4556666554
No 369
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.02 E-value=2.4e+02 Score=21.83 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 89 LEKITAEIEDVTKELAQNNEALEKS 113 (208)
Q Consensus 89 ~~~l~~~i~~~~~~i~~l~~~ie~~ 113 (208)
+..|++.+++++.+..+.++.++-.
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iV 37 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIV 37 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777776666666543
No 370
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.82 E-value=3.7e+02 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 121 KNREDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 121 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
.+|..+..++++|+.+...+.+++.++..
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46888888899999998888888877654
No 371
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=24.69 E-value=9.9 Score=28.29 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhH
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASD 83 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~ 83 (208)
+++-..+++|.+|++-. ...|.- .|+...||.||.... -|+.+++|+-|||+..-
T Consensus 7 ~~~~~~~~~r~~Il~aA---~~l~~~-------------~G~~~~t~~~IA~~a---------gvs~~t~Y~~F~sK~~L 61 (191)
T 4aci_A 7 AAGDKPTNSRQEILEGA---RRCFAE-------------HGYEGATVRRLEEAT---------GKSRGAIFHHFGDKENL 61 (191)
T ss_dssp -------CHHHHHHHHH---HHHHHH-------------HHHHHCCHHHHHHHH---------TCCHHHHHHHHSSHHHH
T ss_pred ccccchHHHHHHHHHHH---HHHHHH-------------hCcccCCHHHHHHHH---------CCCchHHHHHCCCHHHH
Confidence 34445566777766533 233333 388888888887654 57788899999997654
Q ss_pred H
Q psy2296 84 R 84 (208)
Q Consensus 84 ~ 84 (208)
-
T Consensus 62 ~ 62 (191)
T 4aci_A 62 F 62 (191)
T ss_dssp H
T ss_pred H
Confidence 3
No 372
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=24.67 E-value=23 Score=26.85 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=34.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 1 MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 1 MskkkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
|.+++ -..++.|++||+ .-...|.-+ |....||.||.... -|+.+++|+-|||+
T Consensus 1 Mrr~~-~~~~~tR~~Il~---aA~~lf~~~-------------G~~~~s~~~IA~~a---------Gvs~~t~Y~~F~sK 54 (210)
T 3vib_A 1 MRKTK-TEALKTKEHLML---AALETFYRK-------------GIARTSLNEIAQAA---------GVTRDALYWHFKNK 54 (210)
T ss_dssp --------CHHHHHHHHH---HHHHHHHHH-------------CTTTCCHHHHHHHH---------TSCHHHHHHHCSSH
T ss_pred CCCCc-hhHHHHHHHHHH---HHHHHHHHh-------------CcccCCHHHHHHHH---------CcCHHHHHHHCCCH
Confidence 55433 344567777654 333444444 99999999987653 46778899999997
Q ss_pred hh
Q psy2296 81 AS 82 (208)
Q Consensus 81 ~~ 82 (208)
..
T Consensus 55 e~ 56 (210)
T 3vib_A 55 ED 56 (210)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 373
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.59 E-value=2.1e+02 Score=21.08 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cC-CCChhHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy2296 87 CKLEKITAEIEDVTKELAQNNEALEKSMV--GR-GDSKNREDFLQ---EVGNISKELELINKELEK 146 (208)
Q Consensus 87 ~~~~~l~~~i~~~~~~i~~l~~~ie~~~~--~r-~~~~eR~~ll~---~l~~L~~~~~~l~~el~~ 146 (208)
..+++|++++...+..+.....++..+.. ++ +|.-+...+-+ ....|+..+.+|+..|+.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777776666666666666655544 23 33333333332 245566666666666644
No 374
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=24.53 E-value=1.2e+02 Score=20.65 Aligned_cols=42 Identities=2% Similarity=0.126 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHH
Q psy2296 99 VTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELIN 141 (208)
Q Consensus 99 ~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~ 141 (208)
+.+.+..++.-|..++..| ..+|=..|-..|.+|+.++..++
T Consensus 25 L~EQ~~~I~~yI~qAk~~~-r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAG-RMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555566666666644 24455555555666665555543
No 375
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=24.36 E-value=67 Score=21.47 Aligned_cols=41 Identities=22% Similarity=0.503 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHh
Q psy2296 129 EVGNISKELELINKELEKYKN-NDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 129 ~l~~L~~~~~~l~~el~~~~~-~Dp~~i~~~~~~~~~~k~aan 170 (208)
+|....+++.....+|+.|+- .+|+ ++.++++..-.++.+.
T Consensus 27 elaafekeiaafeselqaykgkgnpe-vealrkeaaairdelq 68 (73)
T 2a3d_A 27 ELAAFEKEIAAFESELQAYKGKGNPE-VEALRKEAAAIRDELQ 68 (73)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCCSST-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHH
Confidence 466778888888899998886 4564 4556665555555443
No 376
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=24.36 E-value=2.5e+02 Score=23.04 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=48.0
Q ss_pred chhhhcchHHHHhhc----ccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHHH
Q psy2296 25 EFFQLKLIIELEKLA----PKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVT 100 (208)
Q Consensus 25 ~~f~lK~~~ElEK~~----pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~ 100 (208)
-+|+-. +|+.+. -+..|++...|+++|..- +......+...+..|.++++.++
T Consensus 40 R~Y~~~---dl~~L~~I~~lr~~G~sL~eIk~~l~~~--------------------~~~~~~~L~~~~~~L~~~~~~L~ 96 (249)
T 3qao_A 40 RIYSEK---DVDKLQQILFFKELDFPLKKIQQILDDP--------------------LFDKNVALDMQRHLLIEKKQRIE 96 (249)
T ss_dssp EEBCHH---HHHHHHHHHHHHHTTCCHHHHHHHHHCT--------------------TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCHH---HHHHHHHHHHHHHCCCCHHHHHHHhccC--------------------chHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 666542 244688888888877510 11345567788888899999999
Q ss_pred HHHHHHHHHHHHHhccC
Q psy2296 101 KELAQNNEALEKSMVGR 117 (208)
Q Consensus 101 ~~i~~l~~~ie~~~~~r 117 (208)
..+..+...++....+.
T Consensus 97 ~~~~~l~~~i~~~~~~~ 113 (249)
T 3qao_A 97 TMLATLDLTIKNEKGEI 113 (249)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 88888888887766543
No 377
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=24.23 E-value=25 Score=26.32 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=18.3
Q ss_pred CCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 44 GIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 44 GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
|....||.||-... -|+.+++|+-|||+..
T Consensus 29 G~~~~t~~~IA~~a---------gvsk~tlY~~F~sKe~ 58 (192)
T 2fq4_A 29 GFKAVTVDKIAERA---------KVSKATIYKWWPNKAA 58 (192)
T ss_dssp CTTTCCHHHHHHHH---------TCCHHHHHHHCSSHHH
T ss_pred CcccccHHHHHHHc---------CCCHHHHHHHCCCHHH
Confidence 66666666665542 3555666777777543
No 378
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=24.23 E-value=31 Score=26.31 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
.-..+++|.+||+-- .+.|.-+ |...-||.||.... -|+.+++|+-|||+..
T Consensus 17 ~~~~~~~r~~Il~AA---~~lf~e~-------------G~~~~s~~~IA~~A---------GVsk~tlY~~F~sKe~ 68 (207)
T 3bjb_A 17 SEEQRARHVRMLEAA---IELATEK-------------ELARVQMHEVAKRA---------GVAIGTLYRYFPSKTH 68 (207)
T ss_dssp CCHHHHHHHHHHHHH---HHHHHHS-------------CGGGCCHHHHHHHH---------TCCHHHHHHHCSSHHH
T ss_pred ccchHHHHHHHHHHH---HHHHHHc-------------CcccCCHHHHHHHh---------CCCHHHHHHHCCCHHH
Confidence 345667888876532 2333333 77777777776542 3566678888888654
No 379
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=24.10 E-value=39 Score=27.63 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=23.1
Q ss_pred cCCccchHHHHHHHhhhcCcccccc
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
-|+++-||-+.++-|-+.|||..++
T Consensus 40 LgvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 40 LELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4899999999999999999999999
No 380
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.92 E-value=1.8e+02 Score=20.03 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHH----HHhhhh
Q psy2296 125 DFLQEVGNISKELELINKELEK--YKNNDPDTLKLIENTAQRAKE----AANRWT 173 (208)
Q Consensus 125 ~ll~~l~~L~~~~~~l~~el~~--~~~~Dp~~i~~~~~~~~~~k~----aanrwT 173 (208)
.+-.++..|..++..|..++.. +-..||+.+..+..+...+.. +..||.
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666554 112477777777666655544 445664
No 381
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=23.86 E-value=1.6e+02 Score=21.39 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccccc-ceeEeeccchhh
Q psy2296 5 KGLSVEEKRTGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGT-STYFWSFPNKAS 82 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGt-sN~YWsFps~~~ 82 (208)
-|||..+ -.+|.+++. ....-+.. ||-.. .||.+.+|--+|..|+..|+|......+ --.++-+.....
T Consensus 31 ~gLt~~q--~~vL~~L~~~~~~~~t~~---eLa~~----l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G 101 (147)
T 4b8x_A 31 YGLTFAR--YEALVLLTFSKSGELPMS---KIGER----LMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKG 101 (147)
T ss_dssp GTCCHHH--HHHHHHHHTSGGGEEEHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHH
T ss_pred cCCCHHH--HHHHHHHHHCCCCCcCHH---HHHHH----HCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHH
Confidence 4677654 455665543 33445667 66432 6999999999999999999999887643 233444445544
Q ss_pred HH
Q psy2296 83 DR 84 (208)
Q Consensus 83 ~~ 84 (208)
..
T Consensus 102 ~~ 103 (147)
T 4b8x_A 102 RE 103 (147)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 382
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.80 E-value=2.6e+02 Score=21.82 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q psy2296 83 DRVDCKLEKITAEIEDVTKEL-AQNNEALEKSMVGRGDSKNREDFL-QEVGNISKELELINKELEKYK 148 (208)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~~~i-~~l~~~ie~~~~~r~~~~eR~~ll-~~l~~L~~~~~~l~~el~~~~ 148 (208)
.........+..+++++...+ .+...-+..++..|...+.|...| .++.+-...+..++.+|..++
T Consensus 75 ~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 383
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.70 E-value=35 Score=28.25 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=27.2
Q ss_pred cCCccchHHHHHHHhhhcCccccccccccee
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTY 73 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~ 73 (208)
-|+++-+|...|..|.+.|+|...|-|...+
T Consensus 188 ~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 188 LNLKEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp HTCCHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred hCcCHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 6999999999999999999999777776543
No 384
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=23.69 E-value=1.9e+02 Score=20.69 Aligned_cols=31 Identities=10% Similarity=0.260 Sum_probs=25.4
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
.|....||.||-... -|+.+++|+-|||+..
T Consensus 24 ~G~~~~t~~~Ia~~a---------gvs~~t~Y~~F~sK~~ 54 (183)
T 1zk8_A 24 NGVQEVTLASLAQTL---------GVRSPSLYNHVKGLQD 54 (183)
T ss_dssp HCGGGCCHHHHHHHH---------TSCHHHHTTTCSSHHH
T ss_pred cCccccCHHHHHHHc---------CCCchHHHHHcCCHHH
Confidence 488899999987764 5778899999999754
No 385
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=23.58 E-value=1.8e+02 Score=20.39 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=33.8
Q ss_pred chhhhcchHHHHhhcc----cccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHHH
Q psy2296 25 EFFQLKLIIELEKLAP----KEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVT 100 (208)
Q Consensus 25 ~~f~lK~~~ElEK~~p----K~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~ 100 (208)
-+|+-. +++.+.- +..|++...|++++.. . .......+...++.+.++++.++
T Consensus 39 R~Y~~~---dl~~l~~I~~l~~~G~~l~~I~~~l~~---~-----------------~~~~~~~l~~~~~~l~~~i~~l~ 95 (109)
T 1r8d_A 39 RLYSDA---DLERLQQILFFKEIGFRLDEIKEMLDH---P-----------------NFDRKAALQSQKEILMKKKQRMD 95 (109)
T ss_dssp EEBCHH---HHHHHHHHHHHHHTTCCHHHHHHHHHC---T-----------------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCHH---HHHHHHHHHHHHHCCCCHHHHHHHHhC---C-----------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666 5554322 3358877777777652 0 01223445555566666666665
Q ss_pred HHHHHHHHHH
Q psy2296 101 KELAQNNEAL 110 (208)
Q Consensus 101 ~~i~~l~~~i 110 (208)
..+..+...+
T Consensus 96 ~~~~~l~~~~ 105 (109)
T 1r8d_A 96 EMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 386
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.45 E-value=1.3e+02 Score=19.45 Aligned_cols=17 Identities=0% Similarity=0.210 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2296 124 EDFLQEVGNISKELELI 140 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l 140 (208)
..|-.++..|..++..|
T Consensus 39 ~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 39 SELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 387
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=23.30 E-value=60 Score=24.46 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHhhhccch------hhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 7 LSVEEKRTGLLELFHEKEEF------FQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~~------f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
.|++++....|-.+.....- +.+. .-.+-+|.- .|+++.+|--++..|.++|+|..++
T Consensus 110 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~--~t~~~lA~~-lg~sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 110 GELRARIARYLLFLADTPLSARDRQGIYVT--VSHEEIADA-TASIRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEE--CCHHHHHHT-TTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCeeecc--CCHHHHHHH-hCCCHHHHHHHHHHHHHCCCEEecC
Confidence 56777766666554432110 1111 123344444 7999999999999999999998764
No 388
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.27 E-value=1.6e+02 Score=19.04 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 124 EDFLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
+..+.++++|-.-.-.|..|+..|..
T Consensus 24 ~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 24 ARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44456677777777777777777764
No 389
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=23.19 E-value=26 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=25.4
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeE
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYF 74 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~Y 74 (208)
.+++...+++.+|.|+|-| +.+|||.-||
T Consensus 59 ~~~~g~~~~~~~~~L~~hG---Ck~CGSvp~~ 87 (105)
T 1kpt_A 59 NCISGTEACRHLTNLVNHG---CRVCGSDPLY 87 (105)
T ss_dssp CCEEHHHHHHHHHHHHHHT---CSSCEEEESS
T ss_pred CCcCHHHHHHHHHHHHhcC---ccccCCcccc
Confidence 3558899999999999998 7899998887
No 390
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.11 E-value=1.1e+02 Score=17.26 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2296 92 ITAEIEDVTKELAQNNEALEKS 113 (208)
Q Consensus 92 l~~~i~~~~~~i~~l~~~ie~~ 113 (208)
|+++++.++.+++.++..++..
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444
No 391
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=23.05 E-value=2.3e+02 Score=25.23 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2296 85 VDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYK 148 (208)
Q Consensus 85 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 148 (208)
.-.+-+.|...+..+...+..++..+. .+-...+.+++.|-+++..|..++....
T Consensus 69 vl~~a~~La~~~n~~~~~L~~~~~~~n---------~~i~~~V~~iN~l~~qIa~LN~qI~~~~ 123 (463)
T 2d4y_A 69 LIGKAEGLVNQFKTTDQYLRDQDKQVN---------IAIGSSVAQINNYAKQIANLNDQISRMT 123 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555666666666666665553 2456677888888888888888887764
No 392
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.03 E-value=2.5e+02 Score=21.26 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=31.1
Q ss_pred cchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHH
Q psy2296 24 EEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDR 84 (208)
Q Consensus 24 ~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~ 84 (208)
..+|+++ |+-++ .||++.|+.=+ .+.||+...+.. |=|..|.......
T Consensus 9 ~~~~~i~---e~A~~----~gvs~~TLR~y----e~~Gll~p~r~~--~g~R~Y~~~dl~~ 56 (154)
T 2zhg_A 9 KALLTPG---EVAKR----SGVAVSALHFY----ESKGLITSIRNS--GNQRRYKRDVLRY 56 (154)
T ss_dssp -CCBCHH---HHHHH----HTSCHHHHHHH----HHTTSSCCEECT--TSCEEBCTTHHHH
T ss_pred ccCCCHH---HHHHH----HCcCHHHHHHH----HHcCCCCcccCC--CCCEEeCHHHHHH
Confidence 3578888 76554 69999888765 446999877643 3355566555443
No 393
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=22.97 E-value=1.6e+02 Score=22.77 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=26.2
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhH
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASD 83 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~ 83 (208)
.|+...||.||-+.. -|+.+++|+-|+|+..-
T Consensus 62 ~G~~~~t~~~IA~~a---------Gvs~~t~Y~~F~sKe~L 93 (245)
T 3aqt_A 62 RGVDNVGIAEITEGA---------NIGTGTFYNYFPDREQL 93 (245)
T ss_dssp HCGGGCCHHHHHHHT---------TSCGGGGGGTCSSHHHH
T ss_pred cCcccCcHHHHHHHh---------CCChHHHHHHcCCHHHH
Confidence 499999999987764 57888999999997643
No 394
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.96 E-value=1.6e+02 Score=19.01 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy2296 124 EDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAAN 170 (208)
Q Consensus 124 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aan 170 (208)
..++.+.+.|+.+...|+.||+.-+ ..+.++..++...++-+-
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS----~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNS----NHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhH----HHHHHHHhhhhhHHHHHH
Confidence 4677888889999999988887643 356677777766666543
No 395
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.94 E-value=2.5e+02 Score=25.87 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CH------HHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy2296 121 KNREDFLQEVGNISKELELINKELEKYKNN-DP------DTLKLIENTAQRAKEAANRWTDNLFSL 179 (208)
Q Consensus 121 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~-Dp------~~i~~~~~~~~~~k~aanrwTDNI~~l 179 (208)
.+|..+..++++|+.+...+.+++.++... ++ +..+.++.+...+++.+.........+
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~ 142 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQL 142 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888888876532 11 344555555555555554444433333
No 396
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.94 E-value=1.1e+02 Score=23.04 Aligned_cols=7 Identities=0% Similarity=0.031 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy2296 103 LAQNNEA 109 (208)
Q Consensus 103 i~~l~~~ 109 (208)
+++|+.+
T Consensus 73 vqeLqgE 79 (121)
T 3mq7_A 73 VEELEGE 79 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 397
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=22.88 E-value=81 Score=25.12 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=35.0
Q ss_pred ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchh
Q psy2296 23 KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKA 81 (208)
Q Consensus 23 ~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~ 81 (208)
....-+.+ ||-.. -||++.||-..|+.|.++|+|..++.+ ++++-.+.
T Consensus 17 ~~~~~~~~---~lA~~----l~vs~~tvs~~l~~Le~~GlV~r~~~~----~i~LT~~G 64 (214)
T 3hrs_A 17 RHNKITNK---EIAQL----MQVSPPAVTEMMKKLLAEELLIKDKKA----GYLLTDLG 64 (214)
T ss_dssp SCSCCCHH---HHHHH----HTCCHHHHHHHHHHHHHTTSEEEETTT----EEEECHHH
T ss_pred cCCCcCHH---HHHHH----HCCChhHHHHHHHHHHHCCCEEEecCC----CeEECHHH
Confidence 34455666 55332 599999999999999999999998753 45554443
No 398
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=22.56 E-value=26 Score=30.41 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=34.5
Q ss_pred HHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccc
Q psy2296 14 TGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 14 ~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
.+||+.++ +..-+-. ||-+. .|++..||-.+++.|+++|+|...
T Consensus 23 ~~il~~l~--~~~~sr~---~la~~----~gls~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 23 SRILKRIM--KSPVSRV---ELAEE----LGLTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CCSHHHHH--HSCBCHH---HHHHH----HTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH--cCCcCHH---HHHHH----HCcCHHHHHHHHHHHHHCCCEEee
Confidence 35777777 4455667 66543 799999999999999999999764
No 399
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.29 E-value=95 Score=17.17 Aligned_cols=16 Identities=6% Similarity=0.289 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2296 97 EDVTKELAQNNEALEK 112 (208)
Q Consensus 97 ~~~~~~i~~l~~~ie~ 112 (208)
+.++++|..++..|..
T Consensus 10 daleqkiaalkqkias 25 (28)
T 3ra3_A 10 DALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 400
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.06 E-value=2.5e+02 Score=20.86 Aligned_cols=30 Identities=10% Similarity=0.167 Sum_probs=24.4
Q ss_pred cCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 43 ~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
.| ...||.||-... -|+.+++|+.|||+..
T Consensus 36 ~G-~~~s~~~IA~~a---------Gvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 36 HG-EGVPITQICAAA---------GAHPNQVTYYYGSKER 65 (215)
T ss_dssp HC-TTSCHHHHHHHH---------TCCHHHHHHHHSSHHH
T ss_pred hC-CCcCHHHHHHHh---------CCCHHHHHHHcCCHHH
Confidence 38 999999987754 4677899999999765
No 401
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=22.05 E-value=74 Score=20.80 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=24.3
Q ss_pred ccchHHHHHHHhhhcCcccccccccceeEeeccc
Q psy2296 46 ISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPN 79 (208)
Q Consensus 46 ~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps 79 (208)
.|++.+|++..|-.+|-+..- .|.|-..|.-|.
T Consensus 3 mp~~~~elik~L~~~G~~~~r-~~GSH~~~~~~~ 35 (70)
T 1whz_A 3 MPPRPEEVARKLRRLGFVERM-AKGGHRLYTHPD 35 (70)
T ss_dssp CCCCHHHHHHHHHHTTCEEEE-EETTEEEEECTT
T ss_pred CCCCHHHHHHHHHHCCCEEeC-CCCCCceEecCC
Confidence 478999999999999987654 455555555444
No 402
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.04 E-value=2.3e+02 Score=21.18 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=37.6
Q ss_pred chhhhcchHHHHhhc----ccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHHH
Q psy2296 25 EFFQLKLIIELEKLA----PKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVT 100 (208)
Q Consensus 25 ~~f~lK~~~ElEK~~----pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~ 100 (208)
-+|+-. +|+.+. -+..|++...|++++... ++|- .+ ..+....+...+..+.++++.++
T Consensus 53 R~Y~~~---dl~~l~~I~~lr~~G~sL~eIk~~l~~~-~~~~--------~~-----~~~~~~~l~~~~~~l~~~i~~L~ 115 (148)
T 3gpv_A 53 RIFNEE---ALKYLEMILCLKNTGMPIQKIKQFIDWS-MEGD--------ST-----ILHRLKLMKQQEANVLQLIQDTE 115 (148)
T ss_dssp EEBCHH---HHHHHHHHHHHHTTTCCHHHHHHHHHHH-HHCG--------GG-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCHH---HHHHHHHHHHHHHcCCCHHHHHHHHHhh-hcCC--------CC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666 555432 134688888888888743 3221 00 12233445555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy2296 101 KELAQNNEALEK 112 (208)
Q Consensus 101 ~~i~~l~~~ie~ 112 (208)
..+..+...++.
T Consensus 116 ~~~~~L~~~i~~ 127 (148)
T 3gpv_A 116 KNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 403
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=21.90 E-value=19 Score=29.57 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=4.7
Q ss_pred cccccCCccchHHHHHHHhhhcCccccc
Q psy2296 39 APKEKGIISQSVKEILQSLVDDGLVESE 66 (208)
Q Consensus 39 ~pK~~GI~~~~VKdvlq~LVDDglV~~E 66 (208)
....-||+.+||...++.|+++|+|...
T Consensus 46 La~~~~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 46 LAARLGLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp ----------------------CEEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3343699999999999999999999764
No 404
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=21.79 E-value=15 Score=21.63 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhh
Q psy2296 151 DPDTLKLIENTAQRAKEAANRWTD 174 (208)
Q Consensus 151 Dp~~i~~~~~~~~~~k~aanrwTD 174 (208)
.|+.+.+++++.+.+.-.+-.|.|
T Consensus 13 tpeelkklkeeakkanirvtfwgd 36 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRVTFWGD 36 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCCCBCCC
T ss_pred CHHHHHHHHHHHHhccEEEEeecC
Confidence 588888888887766544444543
No 405
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=21.64 E-value=1.2e+02 Score=22.59 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 5 kglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
+|.+.+++|.+||+- -...|.-+ |+...||.||.+.. -|+.+++|+-|||+..
T Consensus 8 ~~~~~~~~r~~Il~a---A~~lf~~~-------------G~~~~s~~~IA~~a---------gvs~~tlY~~F~sKe~ 60 (204)
T 2ibd_A 8 DTSGKSGRRTELLDI---AATLFAER-------------GLRATTVRDIADAA---------GILSGSLYHHFDSKES 60 (204)
T ss_dssp ---CHHHHHHHHHHH---HHHHHHHH-------------CSTTCCHHHHHHHT---------TSCHHHHHHHCSCHHH
T ss_pred cccccchhHHHHHHH---HHHHHHHc-------------CchhcCHHHHHHHh---------CCCchhHHHhcCCHHH
Confidence 567788888887653 33444444 99999999988764 5778899999999764
No 406
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.59 E-value=2.3e+02 Score=20.83 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=37.5
Q ss_pred chhhhcchHHHHhhcc----cccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHHHHHHHHHHHHHHHHHH
Q psy2296 25 EFFQLKLIIELEKLAP----KEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVT 100 (208)
Q Consensus 25 ~~f~lK~~~ElEK~~p----K~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~~~~~~~~l~~~i~~~~ 100 (208)
-+|+.. +|+.+.- +..|++...|++++... ++|-.. ..+....+...+..+.++++.++
T Consensus 37 R~Y~~~---dl~~l~~I~~lr~~G~sl~eI~~~l~~~-~~~~~~-------------~~~~~~~l~~~~~~l~~~i~~L~ 99 (135)
T 1q06_A 37 RTYTQQ---HLNELTLLRQARQVGFNLEESGELVNLF-NDPQRH-------------SADVKRRTLEKVAEIERHIEELQ 99 (135)
T ss_dssp EECCHH---HHHHHHHHHHHHHTTCCHHHHHHHHHHH-HCTTCC-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCHH---HHHHHHHHHHHHHCCCCHHHHHHHHHhh-hcCCch-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777 6664432 44699888888888754 332110 11223445555555555555555
Q ss_pred HHHHHHHHHH
Q psy2296 101 KELAQNNEAL 110 (208)
Q Consensus 101 ~~i~~l~~~i 110 (208)
.....+...+
T Consensus 100 ~~~~~L~~~~ 109 (135)
T 1q06_A 100 SMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 407
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=21.56 E-value=62 Score=25.03 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=37.8
Q ss_pred chhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 25 EFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 25 ~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
...+.+ || |.. .||++..|..+++.|..-|+|.+-+=..+-|.-+=|....
T Consensus 43 ~~~s~~---eI---A~~-~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~eI 93 (159)
T 3lwf_A 43 GPISLR---SI---AQD-KNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKI 93 (159)
T ss_dssp CCBCHH---HH---HHH-HTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTTC
T ss_pred CCcCHH---HH---HHH-HCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHHC
Confidence 456666 54 333 6999999999999999999999886444566666665443
No 408
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.55 E-value=2.6e+02 Score=20.98 Aligned_cols=49 Identities=12% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhh
Q psy2296 123 REDFLQEVGNISKELELINKELEKYK-NNDPDTLKLIENTAQRAKEAANR 171 (208)
Q Consensus 123 R~~ll~~l~~L~~~~~~l~~el~~~~-~~Dp~~i~~~~~~~~~~k~aanr 171 (208)
-+++.++|.+|+.++-.|.-+...=+ -.+|..|...+.++...+.-++.
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~e 63 (123)
T 2zkr_v 14 KEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 63 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888877766542 35799999999998888776543
No 409
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=21.49 E-value=47 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=25.9
Q ss_pred HhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 36 EKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 36 EK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
+-+|.- .|+++.+|--++..|.++|+|..++
T Consensus 167 ~~lA~~-lg~sr~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 167 HELAAL-AGTSRETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp HHHHHH-HTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHH-hCCCHHHHHHHHHHHHHCCCEEecC
Confidence 344444 7999999999999999999998764
No 410
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.42 E-value=2.5e+02 Score=20.71 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy2296 97 EDVTKELAQNNEALE 111 (208)
Q Consensus 97 ~~~~~~i~~l~~~ie 111 (208)
.....++..++..++
T Consensus 16 ~~~~eel~~lke~l~ 30 (129)
T 2fxo_A 16 ASMKEEFTRLKEALE 30 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 411
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=21.22 E-value=5e+02 Score=24.13 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHH
Q psy2296 105 QNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN-----NDPDTLKLIENTAQRAK 166 (208)
Q Consensus 105 ~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~-----~Dp~~i~~~~~~~~~~k 166 (208)
++.+.++++-..+=+...|..++.+|+.|+...+.-...++.+.+ ++|...+.++.....+.
T Consensus 48 ~~~~~ve~LIdqkI~~~~~~~a~~~l~gL~~~~~~Y~~al~~w~~np~~~~~~~~~~~vr~~f~~l~ 114 (584)
T 1dlc_A 48 AFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYVSALSSWQKNPVSSRNPHSQGRIRELFSQAE 114 (584)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCChHHHHHHHHHHHHHH
Confidence 344455555555666678899999999999999888888888776 34444455555444433
No 412
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.17 E-value=2.5e+02 Score=23.15 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhhcCCCH
Q psy2296 163 QRAKEAANRWTDNLFSLKSWCKNKFGLEE 191 (208)
Q Consensus 163 ~~~k~aanrwTDNI~~l~~~~~~k~~~~~ 191 (208)
....-++....|=+..|..+++..|+++.
T Consensus 109 ~l~LL~a~sl~~l~~~L~~~l~~~F~l~~ 137 (252)
T 3e98_A 109 VLDLLDATSLEDVVSTVEDSLRHEFQVPY 137 (252)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHTSCCSE
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHCCCCe
Confidence 33334444555555667777777777764
No 413
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=21.16 E-value=4.9e+02 Score=23.95 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q psy2296 125 DFLQEVGNISKELELINKELEKYKN-NDPDTLKLIENTAQ 163 (208)
Q Consensus 125 ~ll~~l~~L~~~~~~l~~el~~~~~-~Dp~~i~~~~~~~~ 163 (208)
+..+..++|+.-+..++..|+.+.+ .+++..+.+...+.
T Consensus 531 ~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 570 (605)
T 2kho_A 531 ELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALT 570 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHH
Confidence 3333444444444444444544443 34444444433333
No 414
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.14 E-value=2.9e+02 Score=25.96 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q psy2296 97 EDVTKELAQNNEALEKSMVGR 117 (208)
Q Consensus 97 ~~~~~~i~~l~~~ie~~~~~r 117 (208)
.++...|.+|+..++.....+
T Consensus 60 rDltkrINELKnqLEdlsKns 80 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNN 80 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhc
Confidence 444555555665655554443
No 415
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=21.08 E-value=58 Score=24.11 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
++.-..+++|++||+ .....|.-+ |....||.||-... -|+.+++|+-|||+..
T Consensus 11 ~r~~~~~~~R~~Il~---aA~~lf~~~-------------G~~~~s~~~IA~~a---------Gvs~~tlY~~F~sKe~ 64 (212)
T 3loc_A 11 KRSRAVSAKKKAILS---AALDTFSQF-------------GFHGTRLEQIAELA---------GVSKTNLLYYFPSKEA 64 (212)
T ss_dssp -CCHHHHHHHHHHHH---HHHHHHHHH-------------HHHHCCHHHHHHHH---------TSCHHHHHHHSSSHHH
T ss_pred CCccchHHHHHHHHH---HHHHHHHHh-------------CcccCCHHHHHHHH---------CcCHHHHhhhCCCHHH
Confidence 344556778887765 334444444 88889999887653 4677889999999743
No 416
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.07 E-value=2e+02 Score=20.22 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy2296 128 QEVGNISKELELINKELEKYK 148 (208)
Q Consensus 128 ~~l~~L~~~~~~l~~el~~~~ 148 (208)
.+-..|+.++..|+.|+..+.
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444
No 417
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.07 E-value=1.8e+02 Score=24.54 Aligned_cols=42 Identities=10% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q psy2296 101 KELAQNNEALEKSMVGRGDSKNRED-FLQEVGNISKELELINKELEKYKN 149 (208)
Q Consensus 101 ~~i~~l~~~ie~~~~~r~~~~eR~~-ll~~l~~L~~~~~~l~~el~~~~~ 149 (208)
.++.+++.++..+ ..|.. +...+++++.++..|+.|++.++.
T Consensus 54 ~~l~eL~~ql~~L-------~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSL-------AARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHH-------TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 418
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.03 E-value=3.1e+02 Score=24.40 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy2296 121 KNREDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLFSL 179 (208)
Q Consensus 121 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l 179 (208)
.+|..+..++++|+.+...+.+++.+ -+.+..+.++.+...+++.+.........+
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888888766 233445555555555555444444433333
No 419
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.87 E-value=1.6e+02 Score=18.20 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2296 86 DCKLEKITAEIEDVTKELAQNNEAL 110 (208)
Q Consensus 86 ~~~~~~l~~~i~~~~~~i~~l~~~i 110 (208)
..+.+.|++.|..++.++..|++.+
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444
No 420
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.86 E-value=2.1e+02 Score=19.59 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy2296 84 RVDCKLEKITAEIEDVTKELAQNNEALEKSMVGR 117 (208)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~~~~r 117 (208)
....+++.+..+-..++.++..++..++..+..|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q 37 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQ 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888888888776543
No 421
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=20.84 E-value=3.2e+02 Score=21.74 Aligned_cols=153 Identities=11% Similarity=0.152 Sum_probs=82.5
Q ss_pred HHHHHHhhh-ccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCccccccc---c-cceeEeeccchhhHHHHHH
Q psy2296 14 TGLLELFHE-KEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKI---G-TSTYFWSFPNKASDRVDCK 88 (208)
Q Consensus 14 ~~il~~f~~-~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKi---G-tsN~YWsFps~~~~~~~~~ 88 (208)
-.||.++.+ ....|.|+ ..|+....-..+|++.+|=-.|..|.++|+|.+... | -..-|++.-......+..-
T Consensus 39 ~~IL~lL~~~p~~GYeL~--~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~ 116 (204)
T 3l9f_A 39 DIILGILSKKERSGYEIN--DILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASY 116 (204)
T ss_dssp HHHHHHTSSCCEEHHHHH--HHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHH--HHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHH
Confidence 457777764 56777774 267665544457999999999999999999998754 1 2345666666554443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy2296 89 LEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFL-QEVGNISKELELINKELEKYKNN---DPDTLKLIENTAQR 164 (208)
Q Consensus 89 ~~~l~~~i~~~~~~i~~l~~~ie~~~~~r~~~~eR~~ll-~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~~~~~~~ 164 (208)
+...-.. .....++--.+ .-.+.-+.+++..+| .++..++.+++.+...+...... +|-..-.+.-. ..
T Consensus 117 l~~~~~~----~~~~~~f~~kl--~f~~~l~~~~~~~~L~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~le~~-i~ 189 (204)
T 3l9f_A 117 LQSDVND----EIFKSDFLMRL--FFGNSLNDDDLEQLIREEIERKEEKIKRLSENLEIWKKKGELTPTQEITIKYG-LA 189 (204)
T ss_dssp HHSCCCC----CEEECHHHHHH--HTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH-HH
T ss_pred HhcccCC----CCCccHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHH-HH
Confidence 2211000 00000111111 111223334444444 55777788888887776665542 33333222222 23
Q ss_pred HHHHHhhhhhh
Q psy2296 165 AKEAANRWTDN 175 (208)
Q Consensus 165 ~k~aanrwTDN 175 (208)
..++--+|.|.
T Consensus 190 ~~eael~Wl~~ 200 (204)
T 3l9f_A 190 QYKSTKKVLEE 200 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445567664
No 422
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.81 E-value=2.7e+02 Score=20.83 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=30.7
Q ss_pred hhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhhHH
Q psy2296 26 FFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDR 84 (208)
Q Consensus 26 ~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~~~ 84 (208)
+|+++ |+-++ +||++.|+.=+ ...||+.--..+. |=|..|.......
T Consensus 16 ~~~I~---evA~~----~gvs~~tLR~Y----e~~Gll~p~~r~~-~g~R~Y~~~dl~~ 62 (148)
T 3gpv_A 16 YYTIG---QVAKM----QHLTISQIRYY----DKQGLFPFLQRNE-KGDRIFNEEALKY 62 (148)
T ss_dssp CBCHH---HHHHH----TTCCHHHHHHH----HHTTCCTTCEECT-TCCEEBCHHHHHH
T ss_pred ceeHH---HHHHH----HCcCHHHHHHH----HHCCCCCCCcCCC-CCCeecCHHHHHH
Confidence 68888 77554 69999888765 4479997444443 3356666555443
No 423
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=20.72 E-value=3.8e+02 Score=22.52 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCHHHHhhhcC
Q psy2296 150 NDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCKNKFGLEETALNKHFS 199 (208)
Q Consensus 150 ~Dp~~i~~~~~~~~~~k~aanrwTDNI~~l~~~~~~k~~~~~~~i~~~f~ 199 (208)
..|..|+.+-..+. ..+.+...+=-.|...|.+..||+..+|-+.|.
T Consensus 152 l~~k~id~Lv~~lr---~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~ 198 (339)
T 1sig_A 152 LVPKQFDYLVNSMR---VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFT 198 (339)
T ss_dssp ECHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcc
Confidence 46888887766544 444555556667788888999999999999773
No 424
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=20.68 E-value=25 Score=25.98 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 6 GLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 6 glS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
.++.+++|++|++-.. ..|.- .|+...||.||.+.. .|+.+++|.-|||+..
T Consensus 3 ~~~~~~~r~~Il~aa~---~l~~~-------------~G~~~~t~~~Ia~~a---------gvs~~t~Y~~F~sK~~ 54 (206)
T 3dew_A 3 AMTRADCRSRLMEVAT---ELFAQ-------------KGFYGVSIRELAQAA---------GASISMISYHFGGKEG 54 (206)
T ss_dssp -----CHHHHHHHHHH---HHHHH-------------HCGGGCCHHHHHHHH---------TCCHHHHHHHSCHHHH
T ss_pred CCCchHHHHHHHHHHH---HHHhc-------------CCcccCcHHHHHHHh---------CCCHHHHHHHcCCHHH
Confidence 3566778888766432 22322 488888888876653 5677888999998754
No 425
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=20.48 E-value=5.2e+02 Score=24.10 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHH
Q psy2296 105 QNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN-----NDPDTLKLIENTAQRA 165 (208)
Q Consensus 105 ~l~~~ie~~~~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~-----~Dp~~i~~~~~~~~~~ 165 (208)
++.+.++++-..+=+...|..++.+|+.|+...+.-...++.+.+ +||...+.++.....+
T Consensus 46 ~~~~~ve~LIdqkI~~~~~~~a~~~l~gL~~~~~~Y~~al~~w~~np~~~~~~~~~~~v~~~f~~~ 111 (589)
T 1ji6_A 46 AFMAQVEVLIDKKIEEYAKSKALAELQGLQNNFEDYVNALNSWKKTPLSLRSKRSQDRIRELFSQA 111 (589)
T ss_dssp HHHHHTHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCChhHHHHHHHHHHHH
Confidence 334445555555656678899999999999999998888888776 3444445555544443
No 426
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=20.44 E-value=84 Score=22.63 Aligned_cols=65 Identities=9% Similarity=0.096 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhccchhhhcchHHHHhhcccc-cCCccchHHHHHHHhhhcCcccccccccceeEeeccch
Q psy2296 11 EKRTGLLELFHEKEEFFQLKLIIELEKLAPKE-KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNK 80 (208)
Q Consensus 11 EKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~-~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~ 80 (208)
+-+.+|++.+.+-|.=|.++.=+.-|.+..+. .++.+..+.-+|+.|+.+|.|..+.= +++.|+.
T Consensus 66 ~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~~-----~v~Lp~h 131 (135)
T 2v9v_A 66 AWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAAN-----TVALAGF 131 (135)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECSS-----EEEETTC
T ss_pred HHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecCC-----EEECCCC
Confidence 34455555555555555555322233333322 24677788999999999999988742 5666653
No 427
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=20.40 E-value=46 Score=25.69 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHhhhccchhhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccccccceeEeeccchhh
Q psy2296 4 KKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAS 82 (208)
Q Consensus 4 kkglS~eEKr~~il~~f~~~~~~f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EKiGtsN~YWsFps~~~ 82 (208)
++.-..++.|.+||+-.. ..|.- .|....||.+|-+.. -|+.+.+|.-|||+..
T Consensus 32 ~~~~~~~~~r~~Il~AA~---~lf~e-------------~G~~~~tv~~IA~~A---------Gvs~~tlY~~F~sKe~ 85 (214)
T 2guh_A 32 PVKRTAEQSRSLIVDAAG---RAFAT-------------RPYREITLKDIAEDA---------GVSAPLIIKYFGSKEQ 85 (214)
T ss_dssp ---CCHHHHHHHHHHHHH---HHHHH-------------SCGGGCCHHHHHHHH---------TSCHHHHHHHHSSHHH
T ss_pred ccccchhhHHHHHHHHHH---HHHHH-------------cChhhcCHHHHHHHh---------CCCHHHHHHHcCCHHH
Confidence 455667888888876432 22222 488888888876643 4566778999998654
No 428
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=20.02 E-value=70 Score=24.15 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhhhccch----hhhcchHHHHhhcccccCCccchHHHHHHHhhhcCcccccc
Q psy2296 7 LSVEEKRTGLLELFHEKEEF----FQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEK 67 (208)
Q Consensus 7 lS~eEKr~~il~~f~~~~~~----f~lK~~~ElEK~~pK~~GI~~~~VKdvlq~LVDDglV~~EK 67 (208)
.|++++....|-.+.....- ..+.+..-.+-+|.- .|++..+|--++..|.++|+|..++
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~-lg~sr~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAA-VGSVRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHH-HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHH-hCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 45666666655554432110 011111123344444 7999999999999999999998764
Done!