RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2296
(208 letters)
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 193 bits (494), Expect = 3e-63
Identities = 98/191 (51%), Positives = 139/191 (72%), Gaps = 3/191 (1%)
Query: 16 LLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFW 75
+LE+F E + F+ LK ELEKLAPK KGI S SVKE+LQSLVDDGLV +EKIGTS Y+W
Sbjct: 1 ILEIFQETKTFYTLK---ELEKLAPKVKGISSMSVKEVLQSLVDDGLVRTEKIGTSNYYW 57
Query: 76 SFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISK 135
SFP++A +++ +LEK+ E+E++ + +A+ +EK GR +++ R + L+E+ + K
Sbjct: 58 SFPSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEK 117
Query: 136 ELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCKNKFGLEETALN 195
EL+ + ELEKY+ NDP+ ++ ++ + AKEAANRWTDN+FSLKS+ KFGL+E L
Sbjct: 118 ELKKLKAELEKYEKNDPERIEKLKEETKVAKEAANRWTDNIFSLKSYLSKKFGLDEAQLR 177
Query: 196 KHFSIPEEMDY 206
K F IPE+ DY
Sbjct: 178 KEFGIPEDFDY 188
>gnl|CDD|227453 COG5124, COG5124, Protein predicted to be involved in meiotic
recombination [Cell division and chromosome partitioning
/ General function prediction only].
Length = 209
Score = 122 bits (307), Expect = 7e-35
Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 14/210 (6%)
Query: 5 KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVE 64
KGLS+ EKR L +FH+ ++FFQLK E+EKL K K I+ +VK++LQ LVDDG+V
Sbjct: 4 KGLSLAEKRRRLEAIFHDSKDFFQLK---EVEKLGSK-KQIVLMTVKDLLQQLVDDGVVS 59
Query: 65 SEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGD----- 119
EK GTS +WSF ++ ++ E + +I++V +++A E ++K R
Sbjct: 60 VEKCGTSNIYWSFKSQTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEG 119
Query: 120 --SKNREDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLF 177
+ NRE L++ KE + I K+L + +P + ++ K N+ TDN+
Sbjct: 120 QKNYNREALLEK---RKKEQDEIKKKLNSLQKIEPIRWDAAKIQEKKKKVHLNKTTDNIE 176
Query: 178 SLKSWCKNKFGLEETALNKHFSIPEEMDYI 207
L + KF L+ + K F IPE++D
Sbjct: 177 ILIDYLCKKFFLKPEQIRKEFGIPEDLDEF 206
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 31.4 bits (72), Expect = 0.34
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 24/161 (14%)
Query: 33 IELEKLAPKE-----KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDC 87
++L L + G + + E L+ D VE +
Sbjct: 134 LDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKEL---- 189
Query: 88 KLEKITAEIEDVTKELAQNN-EALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEK 146
++V +EL + E LE G S+ + +E+ I KE E + +EL++
Sbjct: 190 --------SDEVEEELKKLGFERLELEEEGT-PSELIREIKEELEEIEKERESLLEELKE 240
Query: 147 YKNNDPDTLK----LIENTAQRAKEAAN-RWTDNLFSLKSW 182
+ L +E +RA+ + TD F+++ W
Sbjct: 241 LAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGW 281
>gnl|CDD|233080 TIGR00665, DnaB, replicative DNA helicase. This model describes
the helicase DnaB, a homohexameric protein required for
DNA replication. The homohexamer can form a ring around
a single strand of DNA near a replication fork. An
intein of > 400 residues is found at a conserved
location in DnaB of Synechocystis PCC6803, Rhodothermus
marinus (both experimentally confirmed), and
Mycobacterium tuberculosis. The intein removes itself by
a self-splicing reaction. The seed alignment contains
inteins so that the model built from the seed alignment
will model a low cost at common intein insertion sites
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 434
Score = 30.1 bits (69), Expect = 0.80
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 114 MVGRGDSKNREDFLQEVGNISKELELINKELE 145
M G G S+NR+ QEV IS+ L+ + KEL
Sbjct: 317 MSGSGRSENRQ---QEVSEISRSLKALAKELN 345
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 30.1 bits (67), Expect = 1.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 75 WSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDS 120
KA D ++E A +E L Q +E+L+ S+ RG S
Sbjct: 250 ALGAGKALAGGDVQVEAAPAALELHCPSLVQADESLDLSIQNRGGS 295
>gnl|CDD|238042 cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and
similar prokaryotic, metal regulated homodimeric
repressors. ARSR subfamily of helix-turn-helix
bacterial transcription regulatory proteins (winged
helix topology). Includes several proteins that appear
to dissociate from DNA in the presence of metal ions.
Length = 78
Score = 27.6 bits (62), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 46 ISQS-VKEILQSLVDDGLVESEKIGTSTYF 74
+SQS V L+ L + GLVES + G Y+
Sbjct: 32 LSQSTVSRHLKKLEEAGLVESRREGRRVYY 61
>gnl|CDD|183111 PRK11382, frlB, fructoselysine-6-P-deglycase; Provisional.
Length = 340
Score = 29.2 bits (65), Expect = 1.3
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 124 EDFLQEVGNI-SKELELINKELEKYKNNDPDTLKLIE-----NTAQRAKEAANRWTD-NL 176
E+ +QEV + S ++ L++ +E+ D D + + N AQ AK A+R++D +
Sbjct: 15 ENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQV 74
Query: 177 FSLKSW--CKN 185
+++ W C N
Sbjct: 75 YAISGWEFCDN 85
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 29.3 bits (66), Expect = 1.4
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 88 KLEKITAEIEDVTKELAQNNEA---LEKSMVGRGDSKNREDF----LQEVGNISKELELI 140
+++K+ +IE++ EL + L S +R + L+ + NI K+ E I
Sbjct: 390 EIKKLRNKIEELESELQTKEQLYKQLLDEYENAPKSVSRSAYTRRILEIIKNIKKQKEDI 449
Query: 141 NKELEKYKN 149
+K L ++
Sbjct: 450 DKILSDTRS 458
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 28.8 bits (65), Expect = 1.5
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 43 KGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKE 102
G+ +V++ L LVD+G + ++ G + ++ D +L K+ EIE++ +E
Sbjct: 28 NGLGKTAVQKALDELVDEGKIICKEYGKQKIYLCNQDQFELPSDEELNKLDMEIEELREE 87
Query: 103 ---LAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN-NDPDTLKLI 158
L Q+ LE + E+ +E+ + KE+ I ++LE + P T + +
Sbjct: 88 VQLLKQDCSTLEIELKSLTSDLTTEELQEEIQELKKEVREIEEKLESLEEGWKPVTPEEM 147
Query: 159 ENTAQRAKEAANRWT 173
E + K+ W
Sbjct: 148 EKVKKEYKDLHKEWK 162
>gnl|CDD|217733 pfam03796, DnaB_C, DnaB-like helicase C terminal domain. The
hexameric helicase DnaB unwinds the DNA duplex at the
Escherichia coli chromosome replication fork. Although
the mechanism by which DnaB both couples ATP hydrolysis
to translocation along DNA and denatures the duplex is
unknown, a change in the quaternary structure of the
protein involving dimerisation of the N-terminal domain
has been observed and may occur during the enzymatic
cycle. This C-terminal domain contains an ATP-binding
site and is therefore probably the site of ATP
hydrolysis.
Length = 260
Score = 28.3 bits (64), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 114 MVGRGDSKNREDFLQEVGNISKELELINKELE 145
M G S+NR+ QE+ IS+ L+ + KEL
Sbjct: 141 MQGSKKSENRQ---QEISEISRSLKALAKELN 169
>gnl|CDD|224414 COG1497, COG1497, Predicted transcriptional regulator
[Transcription].
Length = 260
Score = 28.5 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 41 KEKGIISQSVKEILQSLVDDGLVESEK 67
K+ GI Q+V E ++ LV +GL+E E
Sbjct: 33 KKLGITLQAVSEHIKELVKEGLIEKEG 59
>gnl|CDD|168658 PRK06749, PRK06749, replicative DNA helicase; Provisional.
Length = 428
Score = 28.4 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 118 GDSKNREDFLQEVGNISKELELINKEL 144
GD K++ + QE+ IS++L+L+ +EL
Sbjct: 313 GDPKHKGNRFQEISEISRKLKLLAREL 339
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 28.4 bits (64), Expect = 3.1
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 66 EKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNRED 125
EKI + ++D + K ++ I++ ++ E L+ + D RED
Sbjct: 25 EKI--KAEYPELEALSNDELRAKTDEFKQYIKEAVADIDAKIEELKAEAIESLDIDERED 82
Query: 126 FLQEVGNISKELELINKELEKYKNND-PDTLKLIENTAQRAKE 167
++ + KE + LEK + P+ +++ TA+R E
Sbjct: 83 IYAQIDKLEKE---AYEILEKVLDEILPEAFAIVKETARRFAE 122
>gnl|CDD|151390 pfam10943, DUF2632, Protein of unknown function (DUF2632). This
is a family of membrane proteins with unknown function.
Length = 233
Score = 28.1 bits (62), Expect = 3.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 72 TYFWSFPNKASDRVDCKLEKITA 94
T FW FP++A D +++K++A
Sbjct: 4 TNFWPFPDQAPDPFKAQIDKLSA 26
>gnl|CDD|180232 PRK05748, PRK05748, replicative DNA helicase; Provisional.
Length = 448
Score = 28.4 bits (64), Expect = 3.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 114 MVGRGDSK-NREDFLQEVGNISKELELINKELE 145
+ G G S NR+ QEV IS+ L+ + KEL+
Sbjct: 326 IQGSGRSGENRQ---QEVSEISRSLKALAKELK 355
>gnl|CDD|221609 pfam12502, DUF3710, Protein of unknown function (DUF3710). This
family of proteins is found in bacteria. Proteins in
this family are typically between 237 and 284 amino
acids in length. There are two conserved sequence
motifs: DLG and DGPRW.
Length = 178
Score = 27.5 bits (62), Expect = 3.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 39 APKEKGIISQSVKEILQSLVDDGL 62
APK G+ + E+ +SL DG
Sbjct: 62 APKSGGLWDEVRAELAESLRKDGG 85
>gnl|CDD|197713 smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance
Operon Repressor.
Length = 66
Score = 26.0 bits (58), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 46 ISQS-VKEILQSLVDDGLVESEKIGTSTYF 74
+SQS V L+ L + GLVES + G Y+
Sbjct: 22 LSQSTVSHHLKKLREAGLVESRREGKRVYY 51
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 27.8 bits (62), Expect = 4.7
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 88 KLEKITAEIEDVTKELAQNNEALE------KSMVGRGDSKNREDFLQEV--GNISKELEL 139
EK+ EIE+ KE+++ AL+ +++ E+ L V + +EL
Sbjct: 809 AAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRK 868
Query: 140 INKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLFSLKS 181
LE+ L L A+ A + L L
Sbjct: 869 RIAALERTLVRAGGGLSLEALVAEAAALDPDELPARLEELAR 910
>gnl|CDD|99868 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath) peroxisomal
(Per) CS_like. CS catalyzes the condensation of acetyl
coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate
and coenzyme A (CoA), the first step in the citric acid
cycle (TCA or Krebs cycle). The overall CS reaction is
thought to proceed through three partial reactions and
involves both closed and open conformational forms of
the enzyme: a) the carbanion or equivalent is generated
from AcCoA by base abstraction of a proton, b) the
nucleophilic attack of this carbanion on OAA to generate
citryl-CoA, and c) the hydrolysis of citryl-CoA to
produce citrate and CoA. This group contains three
Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3
which are involved in the glyoxylate cycle. AthCYS1, in
addition to a peroxisomal targeting sequence, has a
predicted secretory signal peptide; it may be targeted
to both the secretory pathway and the peroxisomes and is
thought to be located in the extracellular matrix.
AthCSY1 is expressed only in siliques and specifically
in developing seeds. AthCSY2 and 3 are active during
seed germination and seedling development and are
thought to participate in the beta-oxidation of fatty
acids.
Length = 410
Score = 27.8 bits (62), Expect = 4.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 107 NEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTA 162
NEA+ + + G +N F++ V N ++ +L YKN DP K+I+ A
Sbjct: 258 NEAVLRMLAEIGTVENIPAFIEGVKN--RKRKLSGFGHRVYKNYDPRA-KIIKKLA 310
>gnl|CDD|225222 COG2345, COG2345, Predicted transcriptional regulator
[Transcription].
Length = 218
Score = 27.3 bits (61), Expect = 5.4
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 41 KEKGIISQSVKEILQSLVDDGLVESE----KIGTSTYFWSFPNKASDRVDCKLEKITA-- 94
+E GI +V+ L L +GLVE E G + K ++ + ++
Sbjct: 33 EELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFPKRYGELALAL 92
Query: 95 --EIEDVTKELAQNN----------EALEKSMVGRGDSKNREDFLQEV 130
+E+ E A N +M G D + + + L E+
Sbjct: 93 LDALEETGGEEALNAFLEKRAQAIGAQYRPAMGGDADLEEKVERLVEL 140
>gnl|CDD|236093 PRK07773, PRK07773, replicative DNA helicase; Validated.
Length = 886
Score = 27.0 bits (60), Expect = 8.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 114 MVGRGDSKNREDFLQEVGNISKELELINKELE 145
M +NR+ QEV IS+ L+L+ KELE
Sbjct: 339 MTSGKKYENRQ---QEVSEISRHLKLLAKELE 367
>gnl|CDD|224768 COG1855, COG1855, ATPase (PilT family) [General function prediction
only].
Length = 604
Score = 26.9 bits (60), Expect = 9.4
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 18/137 (13%)
Query: 34 ELEKLAPKEKGIISQSVKEI--LQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEK 91
ELE A + + I ++E+ L+ L D+G +E E +G S +D + +
Sbjct: 42 ELEAQANRGREIGFAGLEELKKLRDLADEGKIELEFVGERPTLEEIKRAKSGEIDAMIRE 101
Query: 92 ITAEIED--VTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKN 149
+ E VT + Q + A K + EV + E +E++ +
Sbjct: 102 VALEYGATLVTSDRVQRDVARAKGI--------------EVEYLEPVEEPEEVRIEEFFD 147
Query: 150 NDPDTLKLIENTAQRAK 166
+ ++ L E AK
Sbjct: 148 EETMSVHLKEGVPPMAK 164
>gnl|CDD|238484 cd00984, DnaB_C, DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA
and denatures the duplex is unknown, a change in the
quaternary structure of the protein involving
dimerization of the N-terminal domain has been observed
and may occur during the enzymatic cycle. This
C-terminal domain contains an ATP-binding site and is
therefore probably the site of ATP hydrolysis.
Length = 242
Score = 26.7 bits (60), Expect = 9.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 114 MVGRGDSKNREDFLQEVGNISKELELINKELE 145
M G NR+ QEV IS+ L+L+ KEL
Sbjct: 135 MSGSKKKGNRQ---QEVAEISRSLKLLAKELN 163
>gnl|CDD|218486 pfam05188, MutS_II, MutS domain II. This domain is found in
proteins of the MutS family (DNA mismatch repair
proteins) and is found associated with pfam00488,
pfam01624, pfam05192 and pfam05190. The MutS family of
proteins is named after the Salmonella typhimurium MutS
protein involved in mismatch repair; other members of
the family included the eukaryotic MSH 1,2,3, 4,5 and 6
proteins. These have various roles in DNA repair and
recombination. Human MSH has been implicated in
non-polyposis colorectal carcinoma (HNPCC) and is a
mismatch binding protein. This domain corresponds to
domain II in Thermus aquaticus MutS as characterized
in, and has similarity resembles RNAse-H-like domains
(see pfam00075).
Length = 133
Score = 26.2 bits (58), Expect = 9.5
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 30 KLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRV 85
+L+ EL +L+PKE ++ +S+ + L ++G + A + +
Sbjct: 36 ELLAELSRLSPKEL-LLPESLSSSTVAESQKLLELRLRVGRRPTWLFELEHAYEDL 90
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 27.0 bits (59), Expect = 9.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 118 GDSKNREDFLQEVGNISKELELINKELEKYKNNDPDT 154
GD+K RE L+E G K+ I+ ELE + + P+T
Sbjct: 333 GDAKPREVVLEEKG---KDWRKIDLELEHRRVDRPET 366
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.130 0.355
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,483,078
Number of extensions: 991367
Number of successful extensions: 1442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1385
Number of HSP's successfully gapped: 191
Length of query: 208
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 115
Effective length of database: 6,812,680
Effective search space: 783458200
Effective search space used: 783458200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (25.8 bits)