RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2296
         (208 letters)



>d1q0qa1 a.69.3.1 (A:301-398) 1-deoxy-D-xylulose-5-phosphate
           reductoisomerase, C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 98

 Score = 25.9 bits (57), Expect = 1.6
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 124 EDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLFS 178
             FL +    +    L    LEK    +P  +  + +    A+E A +    L S
Sbjct: 44  AAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS 98


>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 69

 Score = 25.0 bits (55), Expect = 1.9
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 33 IELEKLAPKEKGIISQSVKEILQSLVDDGLVES 65
          +  + L  + K +   S+K+ +  L ++G + S
Sbjct: 24 LNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYS 56


>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga
          maritima [TaxId: 2336]}
          Length = 62

 Score = 24.3 bits (53), Expect = 3.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 41 KEKGIISQSVKEILQSLVDDGLVESEKIGTST 72
          +E G+   +V EI +  ++ G+V  EK     
Sbjct: 20 EELGLTKTTVGEIAKIFLEKGIVVEEKDSPKG 51


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 25.6 bits (55), Expect = 5.9
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 26/159 (16%)

Query: 17  LELFHEKEEFFQLKLIIELEKLAPKEK----------GIISQSVKEILQSLVDDGLVESE 66
           LE + ++++    +L  E+EK + + K           + ++    I+Q L + G     
Sbjct: 584 LEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFN 643

Query: 67  KIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDF 126
           K G   Y       A      +            ++   ++E  E  + G  +     ++
Sbjct: 644 KEGKPYYGSPNDEIA------EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEY 697

Query: 127 L----------QEVGNISKELELINKELEKYKNNDPDTL 155
           L          +    + K+ +    ELE         +
Sbjct: 698 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDI 736


>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase
           (SAMT) {Clarkia breweri [TaxId: 36903]}
          Length = 359

 Score = 25.3 bits (55), Expect = 6.3
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 31  LIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLE 90
           L    E  A  E  +I Q +   L  +V +GL+E EK+         P+           
Sbjct: 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSP---------T 260

Query: 91  KITAEIED 98
           ++ AEI  
Sbjct: 261 EVEAEILK 268


>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus
           [TaxId: 1422]}
          Length = 164

 Score = 24.7 bits (54), Expect = 7.5
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 5   KGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVE 64
             L++EE    +  +  ++E    +   I+L+KLA  E G + + ++ I++   D+GL  
Sbjct: 43  PDLTMEECIENVNRVISKREVQNAILTGIQLDKLA--EDGRLDEPLQSIIRR--DEGLYG 98

Query: 65  SEKI 68
            ++I
Sbjct: 99  VDEI 102


>d1r0ka1 a.69.3.1 (A:291-385) 1-deoxy-D-xylulose-5-phosphate
           reductoisomerase, C-terminal domain {Zymomonas mobilis
           [TaxId: 542]}
          Length = 95

 Score = 24.0 bits (52), Expect = 8.6
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 124 EDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDN 175
             FL +        +++ K L+ Y    P +L+ +      A+  A    ++
Sbjct: 44  AAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMES 95


>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 326

 Score = 24.7 bits (53), Expect = 9.8
 Identities = 5/38 (13%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 133 ISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAAN 170
           + + L  I +    +     +  ++++  A++A   A+
Sbjct: 276 VIETLRPIQERYHHWME-SEELDRVLDEGAEKANRVAS 312


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 761,199
Number of extensions: 34608
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 25
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.0 bits)