Query psy2298
Match_columns 366
No_of_seqs 202 out of 536
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:07:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2097|consensus 100.0 4E-111 9E-116 801.8 18.2 364 2-366 14-387 (397)
2 PF05063 MT-A70: MT-A70 ; Int 100.0 6.6E-55 1.4E-59 393.6 19.4 172 141-317 1-176 (176)
3 KOG2098|consensus 100.0 1.6E-49 3.4E-54 394.9 13.8 195 117-327 367-562 (591)
4 COG4725 IME4 Transcriptional a 100.0 3.3E-43 7.1E-48 312.0 14.2 182 123-322 2-183 (198)
5 KOG2356|consensus 100.0 9.9E-32 2.1E-36 257.8 7.1 191 117-320 157-355 (366)
6 PRK13699 putative methylase; P 98.0 0.00016 3.5E-09 68.4 13.9 164 138-319 18-194 (227)
7 PF01555 N6_N4_Mtase: DNA meth 97.5 0.00037 8.1E-09 62.9 7.3 103 142-251 2-114 (231)
8 PRK11524 putative methyltransf 96.5 0.0095 2.1E-07 57.9 7.9 112 125-248 12-130 (284)
9 PF10237 N6-adenineMlase: Prob 91.0 0.26 5.6E-06 44.8 3.9 57 137-211 83-141 (162)
10 TIGR01177 conserved hypothetic 90.6 0.91 2E-05 44.9 7.7 103 107-219 216-319 (329)
11 PF13659 Methyltransf_26: Meth 88.1 0.13 2.7E-06 42.1 -0.4 65 122-190 52-116 (117)
12 PF09445 Methyltransf_15: RNA 86.1 0.21 4.5E-06 45.5 -0.2 27 124-151 52-80 (163)
13 TIGR03534 RF_mod_PrmC protein- 84.6 5.4 0.00012 36.9 8.4 83 124-211 141-238 (251)
14 COG0742 N6-adenine-specific me 84.4 0.94 2E-05 42.2 3.2 56 124-191 97-156 (187)
15 TIGR00138 gidB 16S rRNA methyl 84.3 5.5 0.00012 36.2 8.2 79 113-211 84-166 (181)
16 TIGR03704 PrmC_rel_meth putati 84.0 2.3 4.9E-05 40.7 5.8 86 123-210 136-236 (251)
17 PRK09328 N5-glutamine S-adenos 83.9 5.4 0.00012 37.6 8.3 81 124-209 162-257 (275)
18 PRK10909 rsmD 16S rRNA m(2)G96 82.3 1.7 3.7E-05 40.4 4.1 79 98-191 82-161 (199)
19 PF03602 Cons_hypoth95: Conser 80.3 0.63 1.4E-05 42.7 0.4 89 90-191 63-155 (183)
20 COG1092 Predicted SAM-dependen 79.8 1.2 2.6E-05 46.0 2.3 83 105-192 250-338 (393)
21 PRK11783 rlmL 23S rRNA m(2)G24 78.7 3.3 7.3E-05 45.5 5.5 96 112-210 578-676 (702)
22 COG4123 Predicted O-methyltran 77.2 19 0.00041 35.0 9.6 160 103-291 76-244 (248)
23 COG2263 Predicted RNA methylas 77.1 1.4 3E-05 41.4 1.7 24 123-151 96-119 (198)
24 PF01861 DUF43: Protein of unk 74.1 3.2 7E-05 40.2 3.4 95 105-211 77-175 (243)
25 TIGR00537 hemK_rel_arch HemK-r 67.6 41 0.00089 29.8 8.9 83 122-210 68-161 (179)
26 PRK14968 putative methyltransf 67.3 40 0.00086 29.4 8.7 86 122-210 75-169 (188)
27 TIGR03533 L3_gln_methyl protei 66.8 28 0.00061 33.9 8.2 102 108-221 158-275 (284)
28 TIGR00095 RNA methyltransferas 61.7 12 0.00025 34.4 4.2 40 112-151 89-132 (189)
29 COG1041 Predicted DNA modifica 61.0 27 0.00058 35.7 7.0 94 106-212 230-328 (347)
30 COG0863 DNA modification methy 60.2 24 0.00052 33.5 6.3 43 177-220 87-129 (302)
31 PRK14966 unknown domain/N5-glu 57.3 30 0.00064 36.3 6.7 97 113-212 293-403 (423)
32 PF08445 FR47: FR47-like prote 56.2 22 0.00047 28.4 4.4 40 175-216 47-86 (86)
33 PRK03612 spermidine synthase; 56.2 26 0.00057 37.2 6.3 75 124-207 358-437 (521)
34 TIGR00536 hemK_fam HemK family 55.2 65 0.0014 31.1 8.4 94 112-210 155-265 (284)
35 KOG3420|consensus 54.8 7.6 0.00016 35.5 1.7 28 123-152 99-126 (185)
36 PF01170 UPF0020: Putative RNA 54.6 15 0.00033 33.3 3.7 47 104-152 70-118 (179)
37 KOG3350|consensus 54.4 5.4 0.00012 37.4 0.8 16 137-152 132-147 (217)
38 PF10672 Methyltrans_SAM: S-ad 54.1 6.4 0.00014 38.9 1.3 64 124-195 178-243 (286)
39 TIGR00479 rumA 23S rRNA (uraci 53.9 22 0.00048 36.4 5.2 70 124-210 344-416 (431)
40 PRK05031 tRNA (uracil-5-)-meth 53.4 23 0.00049 35.8 5.1 52 140-210 288-339 (362)
41 PRK14967 putative methyltransf 53.1 69 0.0015 29.6 8.0 92 114-210 78-180 (223)
42 TIGR00446 nop2p NOL1/NOP2/sun 52.4 45 0.00097 32.0 6.7 38 112-151 113-151 (264)
43 PRK10742 putative methyltransf 52.3 8.8 0.00019 37.4 1.9 20 135-154 159-178 (250)
44 PRK15128 23S rRNA m(5)C1962 me 51.3 12 0.00026 38.6 2.7 81 108-191 256-341 (396)
45 PRK11805 N5-glutamine S-adenos 49.6 94 0.002 30.7 8.7 100 108-219 170-285 (307)
46 TIGR02085 meth_trns_rumB 23S r 48.6 30 0.00065 35.1 5.1 68 124-210 285-352 (374)
47 PRK01581 speE spermidine synth 47.8 47 0.001 34.2 6.4 84 125-216 212-299 (374)
48 PRK00811 spermidine synthase; 47.3 17 0.00037 35.4 3.0 57 124-191 135-193 (283)
49 PRK13168 rumA 23S rRNA m(5)U19 44.6 62 0.0013 33.5 6.8 72 123-211 348-421 (443)
50 PF05175 MTS: Methyltransferas 43.7 31 0.00067 30.6 3.9 72 106-187 66-138 (170)
51 PHA03411 putative methyltransf 42.6 14 0.00031 36.5 1.7 82 124-210 113-210 (279)
52 PHA03412 putative methyltransf 40.1 26 0.00057 34.0 3.0 27 124-153 101-127 (241)
53 PF13847 Methyltransf_31: Meth 38.6 49 0.0011 28.4 4.2 45 105-150 38-83 (152)
54 PF05430 Methyltransf_30: S-ad 37.5 53 0.0011 28.5 4.2 64 134-210 44-107 (124)
55 PRK00377 cbiT cobalt-precorrin 36.9 2E+02 0.0043 26.0 8.2 75 124-216 96-171 (198)
56 PRK03522 rumB 23S rRNA methylu 35.9 29 0.00062 34.2 2.6 79 113-210 213-292 (315)
57 KOG2671|consensus 35.6 27 0.00059 36.0 2.4 40 112-153 254-297 (421)
58 KOG3191|consensus 34.8 1.2E+02 0.0026 28.8 6.3 70 139-210 109-189 (209)
59 PF04378 RsmJ: Ribosomal RNA s 33.3 22 0.00048 34.5 1.3 42 139-191 124-166 (245)
60 PF07669 Eco57I: Eco57I restri 33.2 25 0.00055 29.2 1.5 15 140-154 2-16 (106)
61 COG1568 Predicted methyltransf 32.2 31 0.00068 34.6 2.2 48 105-152 185-233 (354)
62 PLN02823 spermine synthase 31.3 58 0.0013 32.9 4.0 50 135-191 171-222 (336)
63 PRK01544 bifunctional N5-gluta 31.2 95 0.0021 33.0 5.7 72 139-211 205-290 (506)
64 TIGR00417 speE spermidine synt 29.5 64 0.0014 31.0 3.8 46 138-191 143-188 (270)
65 PTZ00146 fibrillarin; Provisio 26.1 2.1E+02 0.0045 28.6 6.8 77 124-214 185-271 (293)
66 COG2890 HemK Methylase of poly 25.3 42 0.0009 32.8 1.7 81 134-220 170-263 (280)
67 KOG1271|consensus 25.2 2.3E+02 0.005 27.1 6.5 91 106-212 102-203 (227)
68 TIGR00091 tRNA (guanine-N(7)-) 25.1 1E+02 0.0023 27.8 4.2 82 124-211 70-155 (194)
69 PRK11783 rlmL 23S rRNA m(2)G24 24.2 94 0.002 34.4 4.4 20 284-303 529-548 (702)
70 PRK10901 16S rRNA methyltransf 24.0 90 0.0019 32.2 3.9 37 115-151 288-324 (427)
71 cd00315 Cyt_C5_DNA_methylase C 23.2 80 0.0017 30.5 3.2 37 119-155 41-77 (275)
72 PLN02672 methionine S-methyltr 22.5 1.7E+02 0.0037 34.4 6.0 37 176-213 265-302 (1082)
73 PF05958 tRNA_U5-meth_tr: tRNA 21.2 1.4E+02 0.0031 30.0 4.7 53 139-210 277-329 (352)
74 COG1246 ArgA N-acetylglutamate 20.8 68 0.0015 29.2 2.0 56 140-211 67-122 (153)
75 COG2265 TrmA SAM-dependent met 20.4 2.9E+02 0.0063 29.0 6.8 70 123-208 344-414 (432)
76 PF02384 N6_Mtase: N-6 DNA Met 20.3 45 0.00098 32.3 0.9 16 138-153 123-138 (311)
77 PRK14902 16S rRNA methyltransf 20.0 1.2E+02 0.0025 31.4 3.8 38 113-151 293-331 (444)
No 1
>KOG2097|consensus
Probab=100.00 E-value=4.2e-111 Score=801.81 Aligned_cols=364 Identities=63% Similarity=1.054 Sum_probs=335.4
Q ss_pred chhchhhHHhCCCChhhhhhhhcchhHHHhhhh--hhhhhcchh------hccCCcccccccCCcccccCCCCCCCCCCc
Q psy2298 2 NRAEMSSVEFGISDVNNLKYVLGTAEKRCQQRK--QRIVQADLE------REDGEVYNELVYKDSSTFLKGTQSSNPHND 73 (366)
Q Consensus 2 ~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~f~~~~~~~~~~nd 73 (366)
.||.+||||||.+|++.++.+|+.+.|...++. ++....+.. +.++-|++|..|.+|++|++|+|+++|+||
T Consensus 14 ~~~~~la~tl~~~sad~~~~~l~~a~d~~~~rm~f~~p~~d~~~s~~~~q~~~~~P~~eti~~~s~~~~~gp~~~~p~ND 93 (397)
T KOG2097|consen 14 VRRPLLAQTLGWPSADGVDGNLLPAEDTNNPRMAFQDPTYDENDSRHSNQSHLQGPNQETIYMDSSTFLKGPQSDNPHND 93 (397)
T ss_pred hhccchhhhhCCCccccccccccccccCCCcccccCCCCcCcccccccccccccCCccccccccccccccCCCCcCCccc
Confidence 589999999999999999999999998644333 222211111 134567789999999999999999999999
Q ss_pred ccccccccCCCCcccccCCCCCCCCCcChhhHHHHHhHHHHHHhhCCCCCccccCCccccccccCCcccEEEECCCCccc
Q psy2298 74 YCQHFVDTGQRPQNFIRDVGLADRFEEYPKLRELIKLKDDLIAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEY 153 (366)
Q Consensus 74 y~~~~v~tg~~p~~~i~~~~~~~~~~~ypkl~~l~~lk~~~i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~ 153 (366)
|||||||||++||||||++++++||||||||++||++|+++|++.|++||||++||+.+++..|+.+||||+++|||+.|
T Consensus 94 Ysqnfvdtg~rPQnfir~~~l~nrve~YPKLreLiq~Kdk~I~~sataPmylk~di~si~~~~l~~kfdvil~~pp~eey 173 (397)
T KOG2097|consen 94 YSQNFVDTGSRPQNFIRDVGLANRVEEYPKLRELIQLKDKLINQSATAPMYLKADIDSIDPTLLGNKFDVILNEPPLEEY 173 (397)
T ss_pred hhhhccccCcCchhhhhhhhhhhhhcccHHHHHHHHHHHHHHhhccCCCceeecccceeehhhcccceeeeecCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccc--cCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEeeEEEEEeCCCCCCCcccccc
Q psy2298 154 QRTLGVT--NMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWIRTNASNPGHSKNIEA 231 (366)
Q Consensus 154 s~~~G~~--~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~~vWvK~t~~g~~~~~~~~~ 231 (366)
-+..|+. ....|+|++|.+|||+.|++++|||||||.++..+++++.||.+||||+||++||||+|++++++....++
T Consensus 174 v~~~g~~t~n~~fw~~~di~nL~id~iaa~psFlFlW~gs~egl~lgrnclkkwgfRRcEdicwvktnk~np~ptl~~d~ 253 (397)
T KOG2097|consen 174 VRMAGCLTENMQFWTWDDIQNLPIDEIAAKPSFLFLWCGSGEGLDLGRNCLKKWGFRRCEDICWVKTNKNNPGPTLDLDP 253 (397)
T ss_pred HHhccccccCceEecHHHhhcCchhhhccCCceEEEEecCchhHHHHHHHHHHhcccchhceEEEeccCCCCCCccCCCh
Confidence 8766743 34579999999999999999999999999999999999999999999999999999999999987667888
Q ss_pred ccccccCeeEEEEEEeCCCcCCCCCCcccccccccEEEEecccCCCCCCChHHHHHHHHhCCCCceEEEecCCCCCCCCc
Q psy2298 232 KAVFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLIISEEMEYGSLEKPVEIFHIMEHFCLGRRRLHIFGRDSTIRPGW 311 (366)
Q Consensus 232 g~~~r~~~E~cLmG~rG~vrrstd~~~ih~nvd~dvIi~~~p~~~HSrKP~eiy~lIE~~~p~~rrLELFAR~~~lRpGW 311 (366)
..+|++++|||||||+|+|+|||||||||||||+||||++.++.+.-+||.+||.+||+||.++||||||+|++++||||
T Consensus 254 ktvfqrtkeHClMgIkGTVrRSTDGh~IHaNVDtDliI~ee~~~gn~~kP~~iyrIiEhF~lgrRRLhlfg~ds~iRpGW 333 (397)
T KOG2097|consen 254 KTVFQRTKEHCLMGIKGTVRRSTDGHFIHANVDTDLIIEEEPETGNGEKPSEIYRIIEHFCLGRRRLHLFGRDSKIRPGW 333 (397)
T ss_pred HHHHHHHHHhhhhcccceEEeccCCceEEeecccceEeeccCCcCCCcChHHHHHHHHHHhcceeeeeeccCcCcccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCCCCCCChHhHHhhhhcCcccCCCcccccccCCCCCCCCCCCCCCCCCC
Q psy2298 312 LTIGPDLTNSNFNAETYTSYFINGYISTGCTERIEALRPKSPPPKNKTALSTRGR 366 (366)
Q Consensus 312 ~swGnEv~~~nf~~~~y~~~~~~~~~~~~~t~eie~lrpksp~~~~~~~~~~~~~ 366 (366)
+++|++|+.+||+|+.|.++|++.+.++|||+|||.||||||+++++ ..+|+||
T Consensus 334 ltVgp~lt~sNf~pe~Y~~~fa~~p~~~~~t~eIElLRPkSP~~ksq-~lrg~gr 387 (397)
T KOG2097|consen 334 LTVGPDLTNSNFNPERYKEYFANAPSLTGCTNEIELLRPKSPPPKSQ-SLRGAGR 387 (397)
T ss_pred EEeCccccccCCCHHHHHHHhccCcccccCchhhhhcCCCCCCcccc-ccccCCC
Confidence 99999999999999999999999999999999999999999999987 5555443
No 2
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=100.00 E-value=6.6e-55 Score=393.56 Aligned_cols=172 Identities=32% Similarity=0.616 Sum_probs=156.6
Q ss_pred ccEEEECCCCcccccccc---cccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHH-HHHHHhcCcEEEeeEEEE
Q psy2298 141 FDVIHIEPPLEEYQRTLG---VTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQG-RNCLRKWGFRRCEDICWI 216 (366)
Q Consensus 141 FDVIliDPPW~~~s~~~G---~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~-~ell~~WGFr~ve~~vWv 216 (366)
||||||||||++++.++. ..+|++|+.++|++|||++|++++|||||||||+ .+..+ .+||++|||+|+++|+|+
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWvTn~-~~~~~~~~l~~~WGf~~~~~~~Wv 79 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWVTNS-QLPEAKLELFPAWGFEYVTEWVWV 79 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhCCHHHhCCCCcEEEEEeccc-hhhHHHHHHHHhCCCEEEEEEEEE
Confidence 899999999999886322 5799999999999999999999999999999995 67777 999999999999999999
Q ss_pred EeCCCCCCCccccccccccccCeeEEEEEEeCCCcCCCCCCcccccccccEEEEecccCCCCCCChHHHHHHHHhCCCCc
Q psy2298 217 RTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLIISEEMEYGSLEKPVEIFHIMEHFCLGRR 296 (366)
Q Consensus 217 K~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~vrrstd~~~ih~nvd~dvIi~~~p~~~HSrKP~eiy~lIE~~~p~~r 296 (366)
|+|++|+......++|+++|+++|+||||+||++.++.+..++|++++++||++ +..+|||||+++|++||+|+++.+
T Consensus 80 K~~~~g~~~~~~~~~g~~~r~~~E~lLig~rg~~~~~~~~~~~~~~~~~~vi~~--~~~~HS~KP~~~~~~ie~~~~~~~ 157 (176)
T PF05063_consen 80 KITKNGEPVFPDLGLGYYFRKPYEHLLIGRRGKPRRSSDKDIIHCNVDTDVIIS--PPREHSRKPPELYELIERLCPDAP 157 (176)
T ss_pred EecCCCCccccccCCcccccCCcCeEEeeecCCCCccccccccccCCCCcEEEe--cCCCCCCCChHHHHHHHHhcCCCc
Confidence 999988643112478999999999999999999998888778899999999998 446899999999999999999999
Q ss_pred eEEEecCCCCCCCCceEEcCC
Q psy2298 297 RLHIFGRDSTIRPGWLTIGPD 317 (366)
Q Consensus 297 rLELFAR~~~lRpGW~swGnE 317 (366)
+|||||| ++||||++||||
T Consensus 158 ~LElFaR--~~rpGW~~wGnE 176 (176)
T PF05063_consen 158 RLELFAR--NLRPGWDSWGNE 176 (176)
T ss_pred EEEEEeC--CCCCCceEeCCC
Confidence 9999999 899999999998
No 3
>KOG2098|consensus
Probab=100.00 E-value=1.6e-49 Score=394.94 Aligned_cols=195 Identities=28% Similarity=0.637 Sum_probs=174.8
Q ss_pred hhCCCCCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchH
Q psy2298 117 ETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLD 196 (366)
Q Consensus 117 ~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~ 196 (366)
..+.||+||+|||++||+..|| +|.|||+||||..++ ...|.||+.+|+..|+|+.|. ++||+|||||- ..++
T Consensus 367 ~~l~p~QWI~CDiR~~dm~iLG-kFaVVmADPpWdIHM----eLPYGTm~DdEmr~L~vp~LQ-ddGlIFLWVTG-RAmE 439 (591)
T KOG2098|consen 367 DRLFPPQWICCDIRYLDMSILG-KFAVVMADPPWDIHM----ELPYGTMTDDEMRRLNVPVLQ-DDGLIFLWVTG-RAME 439 (591)
T ss_pred cccCCcceEEeeceeeeeeeec-eeEEEeeCCCcccee----ecCccccchHHhhcCCCcccc-cCcEEEEEEcc-hHHH
Confidence 3478999999999999999998 999999999999887 468999999999999999996 89999999998 4899
Q ss_pred HHHHHHHhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCCCcCCCCCCcccccccccEEEEecccCC
Q psy2298 197 QGRNCLRKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLIISEEMEYG 276 (366)
Q Consensus 197 ~~~ell~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~vrrstd~~~ih~nvd~dvIi~~~p~~~ 276 (366)
+|++||+-|||+++++++|||||.-+... ...-+|+|+.|.+||||||+||++. .++.++|+||||+++++
T Consensus 440 LGrecLnlWGY~rVdEiiWVKTNQLqRiI-rTGRTGHWLNH~KEHcLVG~KGNP~------~~Nr~iD~DvIVaevRe-- 510 (591)
T KOG2098|consen 440 LGRECLNLWGYERVDEIIWVKTNQLQRII-RTGRTGHWLNHGKEHCLVGVKGNPQ------GFNRGLDCDVIVAEVRE-- 510 (591)
T ss_pred HHHHHHHhhchhhhheeEEEeechhhhhe-ecCccccccccCcceeEeeeccChh------hhccCCCcceeehhhhh--
Confidence 99999999999999999999999876421 1235789999999999999999985 36779999999999975
Q ss_pred CCCCChHHHHHHHHhCCCCceEEEecCCCCCCCCceEEcCCCCCC-CCChHh
Q psy2298 277 SLEKPVEIFHIMEHFCLGRRRLHIFGRDSTIRPGWLTIGPDLTNS-NFNAET 327 (366)
Q Consensus 277 HSrKP~eiy~lIE~~~p~~rrLELFAR~~~lRpGW~swGnEv~~~-nf~~~~ 327 (366)
-||||+|||.|||++.|++|+||||||+||.+|||.++|||+... ..|++.
T Consensus 511 TS~KPDEiYgmiERlsp~tRKiElFgR~HN~~p~WiTlGNQL~Girlid~~l 562 (591)
T KOG2098|consen 511 TSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPNWITLGNQLDGIRLIDPDL 562 (591)
T ss_pred hcCCcHHHHHHHHHhCCCcceeeeecCccCCCCCeEEecccccceeecChhH
Confidence 699999999999999999999999999999999999999999764 344443
No 4
>COG4725 IME4 Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=3.3e-43 Score=311.98 Aligned_cols=182 Identities=29% Similarity=0.572 Sum_probs=163.1
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHH
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCL 202 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell 202 (366)
+++.||+++|||..++ +|.|+++||-|..+. ..+|++|+.+||.+|||++|++.+|++|+|+|+ ++++.+.+||
T Consensus 2 q~~~~~~r~~~~~v~~-~~~~~i~~~~~~~~~----~~pY~~m~~~EilaLPv~~L~d~g~~i~lw~T~-~hl~~~~ecL 75 (198)
T COG4725 2 QWIRCDVRKFDFRVLG-KFSVVIADMRALRKA----SAPYDVMSAEEILALPVGQLADMGCLIYLWATA-PHLAFTVECL 75 (198)
T ss_pred ceEEecceEEEEEEcC-ceEEEEcChhHhhhc----cCCCCccccHHHhcCchhHhhhCCcEEEEEecC-hHHHHHHHHH
Confidence 5799999999999887 999999999997543 479999999999999999999999999999999 6999999999
Q ss_pred HhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCCCcCCCCCCcccccccccEEEEecccCCCCCCCh
Q psy2298 203 RKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLIISEEMEYGSLEKPV 282 (366)
Q Consensus 203 ~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~vrrstd~~~ih~nvd~dvIi~~~p~~~HSrKP~ 282 (366)
++|||+|++.+.|.|+|+.|.. +.+|.|+|+|++.|||++|.+|+|+.+ |.-+++++|++.. ++|||||+
T Consensus 76 ~~WGf~~ks~~~W~Ktt~~G~k--v~~GtGhwlr~S~Eh~~vg~~GNpK~~------~~~~~i~li~S~~--RE~SRKP~ 145 (198)
T COG4725 76 KAWGFEYKSFMAWRKTTAAGRK--VRMGTGHWLRTSGEHVFVGTLGNPKQS------HVPPTISLIVSMT--RETSRKPD 145 (198)
T ss_pred HHhCcceeEEEEEeeecccCce--EEeecceeecCCCcEEEEEecCCchhh------cCCCceEEEEccc--hhhccCCH
Confidence 9999999999999999999852 368999999999999999999999843 4456678887754 57999999
Q ss_pred HHHHHHHHhCCCCceEEEecCCCCCCCCceEEcCCCCCCC
Q psy2298 283 EIFHIMEHFCLGRRRLHIFGRDSTIRPGWLTIGPDLTNSN 322 (366)
Q Consensus 283 eiy~lIE~~~p~~rrLELFAR~~~lRpGW~swGnEv~~~n 322 (366)
|+|.+.|++|+.-.+|||||| ..||||.+||||+..+-
T Consensus 146 E~y~i~ErL~~~~aKLEIF~R--d~R~GW~~~GnQ~~~~~ 183 (198)
T COG4725 146 ELYGIAERLAGTHAKLEIFGR--DHRPGWFTIGNQLTGNC 183 (198)
T ss_pred HHHHHHHHhCCccceeeeecc--cCCCCceeecccccccc
Confidence 999999999998789999999 45999999999998653
No 5
>KOG2356|consensus
Probab=99.97 E-value=9.9e-32 Score=257.78 Aligned_cols=191 Identities=17% Similarity=0.273 Sum_probs=153.6
Q ss_pred hhCCCCC--ccccCCcccc-cccc-CCcccEEEECCCCcccccccccccCCCCCHH-HHHcCChhhhccCCeEEEEecCC
Q psy2298 117 ETATPPM--FLKCDVKEFN-LKEL-NVKFDVIHIEPPLEEYQRTLGVTNMQGWSWD-QIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 117 ~~a~pp~--~i~~Dl~~~~-l~~l-~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~-eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
+|-+||+ |+..|+..++ +... ...+|||+|||||.|+++.+ +..|.+.+.. +|.+|||.+++++.|+|++||||
T Consensus 157 kYyIPpkSsF~~gDv~~~~qll~~H~llpdlIIiDPPW~NKSVkR-s~~Ysmlsnl~ql~~IPI~kl~~p~~lvA~WcTN 235 (366)
T KOG2356|consen 157 KYYIPPKSSFHVGDVKDIEQLLRAHDLLPDLIIIDPPWFNKSVKR-SRTYSMLSNLLQLLDIPIIKLHDPLCLVAFWCTN 235 (366)
T ss_pred eEEeCCccceecccHHHHHHHhHHHhhcCCeEEeCCCCCCccccc-ccceecccchhhhhcCCchhhcCCCceEEEEEcC
Confidence 6788998 9999999886 3333 35779999999999998753 4679888876 99999999999999999999999
Q ss_pred C-cchH-HHHHHHHhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCCCcCCCCCCcccccccccEEE
Q psy2298 192 S-EGLD-QGRNCLRKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLII 269 (366)
Q Consensus 192 ~-~~L~-~~~ell~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~vrrstd~~~ih~nvd~dvIi 269 (366)
+ .+++ .-.++|.+||.+.+..|.|+|++..|... +.....-.+.++|.+++|.+.+.-++- .+....+|
T Consensus 236 rqkhi~f~k~eLf~kWnl~lv~tw~wlKitt~gepv--~d~~~~~~k~P~E~L~~a~~s~s~y~~-------~ip~tf~i 306 (366)
T KOG2356|consen 236 RQKHIEFEKIELFDKWNLELVATWKWLKITTQGEPV--YDFDNQKHKVPFESLMLAKKSDSMYKF-------EIPETFVI 306 (366)
T ss_pred cHHHHHHHHHHHHHhhccceEEEEEEEEeccCCCcc--cCchhhhccCcHHHHhhhhcccccccc-------cCCCceEE
Confidence 7 4454 44679999999999999999999998642 221344567899999999987543322 24434444
Q ss_pred EecccCCCCCCChHHHHHHHHhCC-CCceEEEecCCCCCCCCceEEcCCCCC
Q psy2298 270 SEEMEYGSLEKPVEIFHIMEHFCL-GRRRLHIFGRDSTIRPGWLTIGPDLTN 320 (366)
Q Consensus 270 ~~~p~~~HSrKP~eiy~lIE~~~p-~~rrLELFAR~~~lRpGW~swGnEv~~ 320 (366)
+.+|...|||||+ +..+|++|.- ...+|||||| ++.|.|.+||-|++.
T Consensus 307 ~svP~~vHShKPp-Ll~~lrhf~~~~~~~LElFaR--sL~P~~~s~G~Epll 355 (366)
T KOG2356|consen 307 ASVPMSVHSHKPP-LLDLLRHFGIEFTEPLELFAR--SLLPSTHSVGYEPLL 355 (366)
T ss_pred EecchhhhcCCCc-hHHHHHHhCCCCCcHHHHHHh--hcCcccccccchhHH
Confidence 5667678999999 7788898854 5789999999 999999999999874
No 6
>PRK13699 putative methylase; Provisional
Probab=97.98 E-value=0.00016 Score=68.40 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=94.7
Q ss_pred CCcccEEEECCCCccccc-ccccccCCCCCHHHHH---cCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEeeE
Q psy2298 138 NVKFDVIHIEPPLEEYQR-TLGVTNMQGWSWDQIM---QLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDI 213 (366)
Q Consensus 138 ~~kFDVIliDPPW~~~s~-~~G~~~Y~tms~~eI~---~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~~ 213 (366)
...+|+|+.|||+..... ..|..... ....+.. ---+..++.++|.+++|++.. .+..-..++++=||.+...+
T Consensus 18 d~SVDLIiTDPPY~i~~~~~~~~~~~~-~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 18 DNAVDFILTDPPYLVGFRDRQGRTIAG-DKTDEWLQPACNEMYRVLKKDALMVSFYGWN-RVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred ccccceEEeCCCcccccccCCCccccc-ccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-cHHHHHHHHHHCCCEEeeEE
Confidence 478999999999963111 11110000 1111111 112335666788999988863 34433456777899999999
Q ss_pred EEEEeCCCCCCCccccccccccccCeeEEEEEEeCCCcCCCCCCcccccccccEEEEec-ccCCC-CCCChHHHH-HHHH
Q psy2298 214 CWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLIISEE-MEYGS-LEKPVEIFH-IMEH 290 (366)
Q Consensus 214 vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~vrrstd~~~ih~nvd~dvIi~~~-p~~~H-SrKP~eiy~-lIE~ 290 (366)
+|.|.+... +.+++..+|.+++..||..+.. .. ++ .+|..... ....| ..||.++.+ +|+.
T Consensus 96 iW~K~~~~~---------~~~~~~~~E~i~~~~k~k~~~~-~~-----~~-~~v~~~~~~~~~~hp~~kP~~l~~~~i~~ 159 (227)
T PRK13699 96 VFTKNYTSK---------AAYVGYRHECAYILAKGRPALP-QN-----PL-PDVLGWKYSGNRHHPTEKPVTSLQPLIES 159 (227)
T ss_pred EEECCCCCC---------CCCCccceeEEEEEECCCCCcc-cc-----cC-CCcccccCCCCCCCCCCCcHHHHHHHHHH
Confidence 999977421 1234578999999999864321 11 11 13322221 11234 579998654 6677
Q ss_pred hC-CCCceEEEecCC-----CCCCCCceEEcCCCC
Q psy2298 291 FC-LGRRRLHIFGRD-----STIRPGWLTIGPDLT 319 (366)
Q Consensus 291 ~~-p~~rrLELFAR~-----~~lRpGW~swGnEv~ 319 (366)
++ +|--.|.-|+=. ...+-|=..+|-|+.
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~ 194 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELL 194 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecC
Confidence 76 455688999531 012334556677775
No 7
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.45 E-value=0.00037 Score=62.91 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=56.0
Q ss_pred cEEEECCCCccccc-ccccccCCCCCHHHHHc------CChhhhccCCeEEEEecCCCcchH--HHHHHHHhcC-cEEEe
Q psy2298 142 DVIHIEPPLEEYQR-TLGVTNMQGWSWDQIMQ------LEIGEVAAARSFVFLWCGSSEGLD--QGRNCLRKWG-FRRCE 211 (366)
Q Consensus 142 DVIliDPPW~~~s~-~~G~~~Y~tms~~eI~~------LPI~~L~a~~g~lFlWvTn~~~L~--~~~ell~~WG-Fr~ve 211 (366)
|+|++|||...... ..+......++.++-.+ --+.+++.++|.+|+++... .+. ....+++..| |.+..
T Consensus 2 dliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~-~~~~~~~~~~~~~~g~~~~~~ 80 (231)
T PF01555_consen 2 DLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDR-EIAGFLFELALEIFGGFFLRN 80 (231)
T ss_dssp EEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CC-EECTHHHHHHHHHHTT-EEEE
T ss_pred CEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecch-hhhHHHHHHHHHHhhhhheec
Confidence 89999999875322 00001111222222211 12446678999999999986 333 3444566667 99999
Q ss_pred eEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCCCc
Q psy2298 212 DICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGTVR 251 (366)
Q Consensus 212 ~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~vr 251 (366)
.++|.|.+..+ ...+..+...+|.+|++.|+...
T Consensus 81 ~iiW~K~~~~~------~~~~~~~~~~~E~il~~~K~~~~ 114 (231)
T PF01555_consen 81 EIIWNKPNGMP------KSNKKRFSNSHEYILVFSKDKKK 114 (231)
T ss_dssp EEEEE-SSSTT------SSTCCS-B--EEEEEEEESSTT-
T ss_pred cceeEecCccc------cccccccccchhhhhcccccccc
Confidence 99999985221 12223578999999999998765
No 8
>PRK11524 putative methyltransferase; Provisional
Probab=96.48 E-value=0.0095 Score=57.85 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=64.5
Q ss_pred cccCCcccccccc-CCcccEEEECCCCcccc---ccccc---ccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHH
Q psy2298 125 LKCDVKEFNLKEL-NVKFDVIHIEPPLEEYQ---RTLGV---TNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQ 197 (366)
Q Consensus 125 i~~Dl~~~~l~~l-~~kFDVIliDPPW~~~s---~~~G~---~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~ 197 (366)
++.|...+ +..+ ...||+|++|||..... ...+. ..|..+ +++... -+.+++.++|.++|++... .+..
T Consensus 12 ~~gD~~~~-l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~-l~~~l~-~~~rvLK~~G~i~i~~~~~-~~~~ 87 (284)
T PRK11524 12 IHGDALTE-LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDW-LYEWID-ECHRVLKKQGTMYIMNSTE-NMPF 87 (284)
T ss_pred EeccHHHH-HHhcccCcccEEEECCCcccccccccccccccHHHHHHH-HHHHHH-HHHHHhCCCcEEEEEcCch-hhhH
Confidence 44554432 1222 46899999999985311 00000 011111 112222 2445777899999987763 4443
Q ss_pred HHHHHHhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeC
Q psy2298 198 GRNCLRKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKG 248 (366)
Q Consensus 198 ~~ell~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG 248 (366)
..++..-||.+...++|.|.+.... ....+...+|.+|++.|+
T Consensus 88 -~~~~~~~~f~~~~~iiW~k~~~~~~-------~~~~~~~~~e~i~~~~K~ 130 (284)
T PRK11524 88 -IDLYCRKLFTIKSRIVWSYDSSGVQ-------AKKYFGSMYEPILMMVKD 130 (284)
T ss_pred -HHHHHhcCcceEEEEEEEeCCCCCc-------ccCcCCCCccEEEEEEcC
Confidence 3345556999999999999643211 112456778999988876
No 9
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.04 E-value=0.26 Score=44.79 Aligned_cols=57 Identities=26% Similarity=0.420 Sum_probs=34.5
Q ss_pred cCCcccEEEECCCCcccccccccccCCCCCHHHH--HcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEe
Q psy2298 137 LNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQI--MQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 137 l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI--~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve 211 (366)
+..+||+|+||||+-.. +-+ .+.-|..|+ +++.=.||||...+-+.+.++| |++.+.
T Consensus 83 l~~~~d~vv~DPPFl~~--------------ec~~k~a~ti~~L~-k~~~kii~~Tg~~~~~~~~~ll---~~~~~~ 141 (162)
T PF10237_consen 83 LKGKFDVVVIDPPFLSE--------------ECLTKTAETIRLLL-KPGGKIILCTGEEMEELIKKLL---GLRMCD 141 (162)
T ss_pred cCCCceEEEECCCCCCH--------------HHHHHHHHHHHHHh-CccceEEEecHHHHHHHHHHHh---CeeEEe
Confidence 35699999999999321 111 122333343 4567778999742224566677 777664
No 10
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=90.61 E-value=0.91 Score=44.92 Aligned_cols=103 Identities=11% Similarity=0.138 Sum_probs=58.8
Q ss_pred HHHhHHHHHHhhCCCC-CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEE
Q psy2298 107 LIKLKDDLIAETATPP-MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFV 185 (366)
Q Consensus 107 l~~lk~~~i~~~a~pp-~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~l 185 (366)
.++.-.+.++.+..+. .++.+|+..+.+. ...||+|++|||+-......+. ....+ +.++.+- +.+++.++|.+
T Consensus 216 ~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--~~~~D~Iv~dPPyg~~~~~~~~-~~~~l-~~~~l~~-~~r~Lk~gG~l 290 (329)
T TIGR01177 216 MVAGARINLEHYGIEDFFVKRGDATKLPLS--SESVDAIATDPPYGRSTTAAGD-GLESL-YERSLEE-FHEVLKSEGWI 290 (329)
T ss_pred HHHHHHHHHHHhCCCCCeEEecchhcCCcc--cCCCCEEEECCCCcCcccccCC-chHHH-HHHHHHH-HHHHccCCcEE
Confidence 3333344455555543 4667777766543 4689999999998543221110 00000 1222221 34556689999
Q ss_pred EEecCCCcchHHHHHHHHhcCcEEEeeEEEEEeC
Q psy2298 186 FLWCGSSEGLDQGRNCLRKWGFRRCEDICWIRTN 219 (366)
Q Consensus 186 FlWvTn~~~L~~~~ell~~WGFr~ve~~vWvK~t 219 (366)
.+|+++...+ .++++.-|| +...+.+++.
T Consensus 291 v~~~~~~~~~---~~~~~~~g~--i~~~~~~~~h 319 (329)
T TIGR01177 291 VYAVPTRIDL---ESLAEDAFR--VVKRFEVRVH 319 (329)
T ss_pred EEEEcCCCCH---HHHHhhcCc--chheeeeeee
Confidence 9999874222 357888899 6666666654
No 11
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=88.14 E-value=0.13 Score=42.07 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=33.6
Q ss_pred CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecC
Q psy2298 122 PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCG 190 (366)
Q Consensus 122 p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvT 190 (366)
..++..|+..+.-.....+||+|+.||||-...... ..+.. ...++.. -+.+++.++|.+++|+.
T Consensus 52 ~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~--~~~~~-~~~~~~~-~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 52 VEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDK--AALRR-LYSRFLE-AAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT------GGC-HHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred EEEEECchhhchhhccCceeEEEEECCCCccccccc--hhhHH-HHHHHHH-HHHHHcCCCeEEEEEeC
Confidence 347788876664112247999999999997432110 00111 2222221 23456678898888764
No 12
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=86.12 E-value=0.21 Score=45.46 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=12.5
Q ss_pred ccccCCcccccccc--CCcccEEEECCCCc
Q psy2298 124 FLKCDVKEFNLKEL--NVKFDVIHIEPPLE 151 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l--~~kFDVIliDPPW~ 151 (366)
|+++|...+- ..+ ...||+|.++|||-
T Consensus 52 ~i~gD~~~~~-~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 52 FICGDFFELL-KRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEES-HHHHG-GGB------SEEEE---BS
T ss_pred EEeCCHHHHH-hhccccccccEEEECCCCC
Confidence 6777765542 112 12299999999994
No 13
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=84.55 E-value=5.4 Score=36.89 Aligned_cols=83 Identities=24% Similarity=0.299 Sum_probs=47.0
Q ss_pred ccccCCccccccccCCcccEEEECCCCccccccc---c-cccC----------CCCC-HHHHHcCChhhhccCCeEEEEe
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTL---G-VTNM----------QGWS-WDQIMQLEIGEVAAARSFVFLW 188 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~---G-~~~Y----------~tms-~~eI~~LPI~~L~a~~g~lFlW 188 (366)
++++|+... +. ..+||+|++|||+-...... . ...| ..+. +..+.. -+.+++.++|.+++.
T Consensus 141 ~~~~d~~~~-~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~-~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 141 FLQSDWFEP-LP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIA-QAPRLLKPGGWLLLE 216 (251)
T ss_pred EEECchhcc-Cc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHH-HHHHhcccCCEEEEE
Confidence 566676432 21 36899999999986422100 0 0000 0000 111111 134456789999998
Q ss_pred cCCCcchHHHHHHHHhcCcEEEe
Q psy2298 189 CGSSEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 189 vTn~~~L~~~~ell~~WGFr~ve 211 (366)
+... ..+...++|.+-||+.++
T Consensus 217 ~~~~-~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 217 IGYD-QGEAVRALFEAAGFADVE 238 (251)
T ss_pred ECcc-HHHHHHHHHHhCCCCceE
Confidence 8763 456667788888997665
No 14
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=84.38 E-value=0.94 Score=42.21 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=35.4
Q ss_pred ccccCCccccccccCCc--ccEEEECCCCcccccccccccCCCCC--HHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVK--FDVIHIEPPLEEYQRTLGVTNMQGWS--WDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~k--FDVIliDPPW~~~s~~~G~~~Y~tms--~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
.++.|...+ +..++.+ ||+|++|||... | +. ...+..+.-..++.+++++++=...
T Consensus 97 ~~~~da~~~-L~~~~~~~~FDlVflDPPy~~-----~------l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 97 VLRNDALRA-LKQLGTREPFDLVFLDPPYAK-----G------LLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeecHHHH-HHhcCCCCcccEEEeCCCCcc-----c------hhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 455555522 4556655 999999999862 1 22 2334444455677889988876654
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=84.33 E-value=5.5 Score=36.25 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=48.6
Q ss_pred HHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
+.+++...+ -.++++|+..+. ....||+|+++. +. .++++.+. +.+++.++|.+++|...
T Consensus 84 ~~~~~~~~~~i~~i~~d~~~~~---~~~~fD~I~s~~-~~--------------~~~~~~~~-~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 84 EVKAELGLNNVEIVNGRAEDFQ---HEEQFDVITSRA-LA--------------SLNVLLEL-TLNLLKVGGYFLAYKGK 144 (181)
T ss_pred HHHHHhCCCCeEEEecchhhcc---ccCCccEEEehh-hh--------------CHHHHHHH-HHHhcCCCCEEEEEcCC
Confidence 334444443 237888887752 246999999974 21 12222221 24566799999999876
Q ss_pred CcchHHHHHHHHh---cCcEEEe
Q psy2298 192 SEGLDQGRNCLRK---WGFRRCE 211 (366)
Q Consensus 192 ~~~L~~~~ell~~---WGFr~ve 211 (366)
. .......+.+. |||+.++
T Consensus 145 ~-~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 145 K-YLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred C-cHHHHHHHHHhhhhcCceEee
Confidence 3 45555555555 9998774
No 16
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=84.02 E-value=2.3 Score=40.75 Aligned_cols=86 Identities=7% Similarity=0.025 Sum_probs=47.0
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccc----c-ccCCCCC----------HHHHHcCChhhhccCCeEEEE
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLG----V-TNMQGWS----------WDQIMQLEIGEVAAARSFVFL 187 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G----~-~~Y~tms----------~~eI~~LPI~~L~a~~g~lFl 187 (366)
.+++.|+....-..+..+||+|+.|||+-....... . .+.+.+. +.+|.. -...++.++|.++|
T Consensus 136 ~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~-~a~~~L~~gG~l~l 214 (251)
T TIGR03704 136 TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAA-GAPDWLAPGGHLLV 214 (251)
T ss_pred EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHH-HHHHhcCCCCEEEE
Confidence 567888754321122357999999999963211000 0 0100011 112221 24466778887776
Q ss_pred ecCCCcchHHHHHHHHhcCcEEE
Q psy2298 188 WCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 188 WvTn~~~L~~~~ell~~WGFr~v 210 (366)
=... ...+...++|++-||+..
T Consensus 215 ~~~~-~~~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 215 ETSE-RQAPLAVEAFARAGLIAR 236 (251)
T ss_pred EECc-chHHHHHHHHHHCCCCce
Confidence 5555 356677788988887543
No 17
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=83.93 E-value=5.4 Score=37.64 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=44.7
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccc---c-ccCCC-C-------C---HHHHHcCChhhhccCCeEEEEe
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLG---V-TNMQG-W-------S---WDQIMQLEIGEVAAARSFVFLW 188 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G---~-~~Y~t-m-------s---~~eI~~LPI~~L~a~~g~lFlW 188 (366)
++.+|+... +. ..+||+|+.|||+-....... . ..|.. . . +..|.. -+.+++.++|.+++-
T Consensus 162 ~~~~d~~~~-~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~-~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 162 FLQGDWFEP-LP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIE-QAPRYLKPGGWLLLE 237 (275)
T ss_pred EEEccccCc-CC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHH-HHHHhcccCCEEEEE
Confidence 666665221 11 368999999999853221000 0 00000 0 0 111211 234667789999887
Q ss_pred cCCCcchHHHHHHHHhcCcEE
Q psy2298 189 CGSSEGLDQGRNCLRKWGFRR 209 (366)
Q Consensus 189 vTn~~~L~~~~ell~~WGFr~ 209 (366)
+... ..+...++|.+.||.-
T Consensus 238 ~g~~-~~~~~~~~l~~~gf~~ 257 (275)
T PRK09328 238 IGYD-QGEAVRALLAAAGFAD 257 (275)
T ss_pred ECch-HHHHHHHHHHhCCCce
Confidence 7653 3456677899999973
No 18
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=82.27 E-value=1.7 Score=40.44 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=42.8
Q ss_pred CCcChhhHHHHHhHHHHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChh
Q psy2298 98 FEEYPKLRELIKLKDDLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIG 176 (366)
Q Consensus 98 ~~~ypkl~~l~~lk~~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~ 176 (366)
+|-.|..-++.+ +.++..... -.+++.|+..+ +......||+|++|||+.. | +..+.|..|--.
T Consensus 82 vE~~~~a~~~a~---~Nl~~~~~~~v~~~~~D~~~~-l~~~~~~fDlV~~DPPy~~-----g------~~~~~l~~l~~~ 146 (199)
T PRK10909 82 LEMDRAVAQQLI---KNLATLKAGNARVVNTNALSF-LAQPGTPHNVVFVDPPFRK-----G------LLEETINLLEDN 146 (199)
T ss_pred EECCHHHHHHHH---HHHHHhCCCcEEEEEchHHHH-HhhcCCCceEEEECCCCCC-----C------hHHHHHHHHHHC
Confidence 344555554433 344444332 23667776543 2223447999999999742 2 222333444334
Q ss_pred hhccCCeEEEEecCC
Q psy2298 177 EVAAARSFVFLWCGS 191 (366)
Q Consensus 177 ~L~a~~g~lFlWvTn 191 (366)
.++.++++|++=+..
T Consensus 147 ~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 147 GWLADEALIYVESEV 161 (199)
T ss_pred CCcCCCcEEEEEecC
Confidence 455678888876554
No 19
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=80.32 E-value=0.63 Score=42.73 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred cCCCCCCCCCcChhhHHHHHhHHHHHHhhCCCC--CccccCCcccc--ccccCCcccEEEECCCCcccccccccccCCCC
Q psy2298 90 RDVGLADRFEEYPKLRELIKLKDDLIAETATPP--MFLKCDVKEFN--LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGW 165 (366)
Q Consensus 90 ~~~~~~~~~~~ypkl~~l~~lk~~~i~~~a~pp--~~i~~Dl~~~~--l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tm 165 (366)
|++....-+|--++.-++++-. +++..... .-+++|...+- +..-+.+||+|++|||..... .
T Consensus 63 RGA~~v~fVE~~~~a~~~i~~N---~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~----------~ 129 (183)
T PF03602_consen 63 RGAKSVVFVEKNRKAIKIIKKN---LEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL----------Y 129 (183)
T ss_dssp TT-SEEEEEES-HHHHHHHHHH---HHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH----------H
T ss_pred cCCCeEEEEECCHHHHHHHHHH---HHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch----------H
Confidence 4444344455566666555433 33333322 23556643331 222368999999999986311 0
Q ss_pred CHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 166 SWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 166 s~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
..+-|..|-=..++.++|+|.+=...
T Consensus 130 ~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 130 YEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 12233444334677788877665544
No 20
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=79.82 E-value=1.2 Score=45.96 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHhhCCCC---CccccCCccc--cccccCCcccEEEECCCCcccccccccccCC-CCCHHHHHcCChhhh
Q psy2298 105 RELIKLKDDLIAETATPP---MFLKCDVKEF--NLKELNVKFDVIHIEPPLEEYQRTLGVTNMQ-GWSWDQIMQLEIGEV 178 (366)
Q Consensus 105 ~~l~~lk~~~i~~~a~pp---~~i~~Dl~~~--~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~-tms~~eI~~LPI~~L 178 (366)
++-++.=.+...-..+++ .||+.|+=.+ .....|.+||||++|||=--++. ++. .+ .-.+.+|+.+-+. |
T Consensus 250 ~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k-~~~--~~~~rdy~~l~~~~~~-i 325 (393)
T COG1092 250 KRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSK-KQE--FSAQRDYKDLNDLALR-L 325 (393)
T ss_pred HHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCc-ccc--hhHHHHHHHHHHHHHH-H
Confidence 344445555555555543 3888886555 13444679999999999542221 110 00 0123455555444 5
Q ss_pred ccCCeEEEEecCCC
Q psy2298 179 AAARSFVFLWCGSS 192 (366)
Q Consensus 179 ~a~~g~lFlWvTn~ 192 (366)
++++|.+++ +||+
T Consensus 326 L~pgG~l~~-~s~~ 338 (393)
T COG1092 326 LAPGGTLVT-SSCS 338 (393)
T ss_pred cCCCCEEEE-EecC
Confidence 567775444 4544
No 21
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=78.72 E-value=3.3 Score=45.50 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=51.9
Q ss_pred HHHHHhhCCC---CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEe
Q psy2298 112 DDLIAETATP---PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLW 188 (366)
Q Consensus 112 ~~~i~~~a~p---p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlW 188 (366)
.+.++..... -.|+++|+..+ +..++.+||+|++|||--..+..........-.+.+|... +.+++.++|++++-
T Consensus 578 ~~N~~~ng~~~~~v~~i~~D~~~~-l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~ 655 (702)
T PRK11783 578 ERNFALNGLSGRQHRLIQADCLAW-LKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHHhCCCccceEEEEccHHHH-HHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEE
Confidence 4444444443 24788887553 2334678999999999643211000000000123444443 34566789987664
Q ss_pred cCCCcchHHHHHHHHhcCcEEE
Q psy2298 189 CGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 189 vTn~~~L~~~~ell~~WGFr~v 210 (366)
+ +...+....+.+..=||++.
T Consensus 656 ~-~~~~~~~~~~~~~~~g~~~~ 676 (702)
T PRK11783 656 N-NKRGFKMDEEGLAKLGLKAE 676 (702)
T ss_pred e-CCccCChhHHHHHhCCCeEE
Confidence 4 44456655667776676654
No 22
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=77.23 E-value=19 Score=35.05 Aligned_cols=160 Identities=17% Similarity=0.203 Sum_probs=91.2
Q ss_pred hhHHHHHhHHHHHHhhCCCCC--ccccCCccccccccCCcccEEEECCCCcccccc------cc-cccCCCCCHHHHHcC
Q psy2298 103 KLRELIKLKDDLIAETATPPM--FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRT------LG-VTNMQGWSWDQIMQL 173 (366)
Q Consensus 103 kl~~l~~lk~~~i~~~a~pp~--~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~------~G-~~~Y~tms~~eI~~L 173 (366)
..+++.++=.+.|+......+ +++.|+..+.-.....+||+|+++||.-..... +. +.|..+.+++++.+-
T Consensus 76 iq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~ 155 (248)
T COG4123 76 IQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA 155 (248)
T ss_pred eCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH
Confidence 345666666667766555544 788888888533334479999999998742111 11 123334456666543
Q ss_pred ChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCCCcCC
Q psy2298 174 EIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGTVRRS 253 (366)
Q Consensus 174 PI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~vrrs 253 (366)
-.+++.++|.+++=.-. ..+..-.++|.+-+|... .++.|-.+.. +..+-.++-+++|.-..
T Consensus 156 -a~~~lk~~G~l~~V~r~-erl~ei~~~l~~~~~~~k-~i~~V~p~~~--------------k~A~~vLv~~~k~~~~~- 217 (248)
T COG4123 156 -AAKLLKPGGRLAFVHRP-ERLAEIIELLKSYNLEPK-RIQFVYPKIG--------------KAANRVLVEAIKGGKSG- 217 (248)
T ss_pred -HHHHccCCCEEEEEecH-HHHHHHHHHHHhcCCCce-EEEEecCCCC--------------CcceEEEEEEecCCCCC-
Confidence 23455678866664443 356666778888777654 4455544432 22344566677764211
Q ss_pred CCCCcccccccccEEEEecccCCCCCCChHHHHHHHHh
Q psy2298 254 TDGDFIHANVDIDLIISEEMEYGSLEKPVEIFHIMEHF 291 (366)
Q Consensus 254 td~~~ih~nvd~dvIi~~~p~~~HSrKP~eiy~lIE~~ 291 (366)
+ -+.+.+||.... +| --| ++.++...|
T Consensus 218 ----l---~~~ppLii~~e~--g~-yt~-e~~~i~~~~ 244 (248)
T COG4123 218 ----L---KVLPPLIIHDED--GE-YTE-EVKEIYQGF 244 (248)
T ss_pred ----c---eecCCEEEECCC--CC-cCH-HHHHHHhhH
Confidence 1 255678876432 33 113 466665544
No 23
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.14 E-value=1.4 Score=41.38 Aligned_cols=24 Identities=38% Similarity=0.779 Sum_probs=20.3
Q ss_pred CccccCCccccccccCCcccEEEECCCCc
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
.|+.||++.|+ .+||+++|||||=
T Consensus 96 ~f~~~dv~~~~-----~~~dtvimNPPFG 119 (198)
T COG2263 96 EFVVADVSDFR-----GKFDTVIMNPPFG 119 (198)
T ss_pred EEEEcchhhcC-----CccceEEECCCCc
Confidence 37888888875 7999999999994
No 24
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=74.12 E-value=3.2 Score=40.20 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=46.2
Q ss_pred HHHHHhHHHHHHhhCCCCCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeE
Q psy2298 105 RELIKLKDDLIAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSF 184 (366)
Q Consensus 105 ~~l~~lk~~~i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~ 184 (366)
++|+..-++.-.+...+=.-+.+|++.===..+..+|||++.||||.... +....+--|..|-.+.|.
T Consensus 77 eRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G------------~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 77 ERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEG------------LKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SSHHH------------HHHHHHHHHHTB-STT-E
T ss_pred HHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCCHHH------------HHHHHHHHHHHhCCCCce
Confidence 57888888888888887445666776532234557999999999996421 122333344445545556
Q ss_pred EEEecCCCc-chHH---HHHHHHhcCcEEEe
Q psy2298 185 VFLWCGSSE-GLDQ---GRNCLRKWGFRRCE 211 (366)
Q Consensus 185 lFlWvTn~~-~L~~---~~ell~~WGFr~ve 211 (366)
+|+=.+..+ .... ..+.+-.-||-..+
T Consensus 145 gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 145 GYFGFTHKEASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp EEEEE-TTT--HHHHHHHHHHHHTS--EEEE
T ss_pred EEEEEecCcCcHHHHHHHHHHHHHCCcCHHH
Confidence 666666543 2332 23455577876554
No 25
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=67.58 E-value=41 Score=29.82 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=44.3
Q ss_pred CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCC----------CHHHHHcCChhhhccCCeE-EEEecC
Q psy2298 122 PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGW----------SWDQIMQLEIGEVAAARSF-VFLWCG 190 (366)
Q Consensus 122 p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tm----------s~~eI~~LPI~~L~a~~g~-lFlWvT 190 (366)
..++.+|+.... ..+||+|+.+|||..........++..+ ..+.+.. -+..++.++|. +++..+
T Consensus 68 ~~~~~~d~~~~~----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 68 LDVVMTDLFKGV----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLD-ELPEILKEGGRVQLIQSS 142 (179)
T ss_pred eEEEEccccccc----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHH-hHHHhhCCCCEEEEEEec
Confidence 345677764432 3489999999999643211000011000 0112211 23456667774 444444
Q ss_pred CCcchHHHHHHHHhcCcEEE
Q psy2298 191 SSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 191 n~~~L~~~~ell~~WGFr~v 210 (366)
. .......++|++=||...
T Consensus 143 ~-~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 143 L-NGEPDTFDKLDERGFRYE 161 (179)
T ss_pred c-CChHHHHHHHHhCCCeEE
Confidence 3 236777888988898654
No 26
>PRK14968 putative methyltransferase; Provisional
Probab=67.33 E-value=40 Score=29.44 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=46.0
Q ss_pred CCccccCCccccccccCCcccEEEECCCCcccccc-c---c---cccCCCCCHHHHHcC--ChhhhccCCeEEEEecCCC
Q psy2298 122 PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRT-L---G---VTNMQGWSWDQIMQL--EIGEVAAARSFVFLWCGSS 192 (366)
Q Consensus 122 p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~-~---G---~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWvTn~ 192 (366)
..++.+|+... +. ...||+|+.+||....... . . ..+....+...+.++ .+..++.++|.+++.+..-
T Consensus 75 ~~~~~~d~~~~-~~--~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 75 VEVIRSDLFEP-FR--GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred eEEEecccccc-cc--ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 44677776442 21 2389999999997421100 0 0 000000111111111 2335566889888887653
Q ss_pred cchHHHHHHHHhcCcEEE
Q psy2298 193 EGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 193 ~~L~~~~ell~~WGFr~v 210 (366)
...+...++|..=||+..
T Consensus 152 ~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 152 TGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred CCHHHHHHHHHHCCCeee
Confidence 335666778888898654
No 27
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=66.83 E-value=28 Score=33.89 Aligned_cols=102 Identities=13% Similarity=0.203 Sum_probs=54.0
Q ss_pred HHhHHHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccc---c-ccCCCC---------C-HHHHH
Q psy2298 108 IKLKDDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLG---V-TNMQGW---------S-WDQIM 171 (366)
Q Consensus 108 ~~lk~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G---~-~~Y~tm---------s-~~eI~ 171 (366)
++.=.+.++.+.... .|+++|+... +. ..+||+|+.|||+-....... . .+.+.+ . +..|.
T Consensus 158 l~~A~~n~~~~~~~~~i~~~~~D~~~~-~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il 234 (284)
T TIGR03533 158 LAVAEINIERHGLEDRVTLIQSDLFAA-LP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRIL 234 (284)
T ss_pred HHHHHHHHHHcCCCCcEEEEECchhhc-cC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHH
Confidence 333344455554432 2677776321 11 347999999999853221000 0 000000 0 11222
Q ss_pred cCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEeeEEEEEeCCC
Q psy2298 172 QLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWIRTNAS 221 (366)
Q Consensus 172 ~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~~vWvK~t~~ 221 (366)
+ -+.+++.++|.+++-+.++ . +...++|..=| +.|+-....
T Consensus 235 ~-~a~~~L~~gG~l~~e~g~~-~-~~v~~~~~~~~------~~~~~~~~~ 275 (284)
T TIGR03533 235 A-EAADHLNENGVLVVEVGNS-M-EALEEAYPDVP------FTWLEFENG 275 (284)
T ss_pred H-HHHHhcCCCCEEEEEECcC-H-HHHHHHHHhCC------CceeeecCC
Confidence 2 2345667899999999874 3 66677887644 456555443
No 28
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=61.73 E-value=12 Score=34.41 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=22.5
Q ss_pred HHHHHhhCCCC--CccccCCccc-c-ccccCCcccEEEECCCCc
Q psy2298 112 DDLIAETATPP--MFLKCDVKEF-N-LKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 112 ~~~i~~~a~pp--~~i~~Dl~~~-~-l~~l~~kFDVIliDPPW~ 151 (366)
.+.++...... .+++.|+..+ . +..-...||||++|||..
T Consensus 89 ~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 89 KENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFF 132 (189)
T ss_pred HHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCC
Confidence 34444443332 3677887443 1 111123599999999974
No 29
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=61.04 E-value=27 Score=35.67 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=57.2
Q ss_pred HHHHhHHHHHHhhCCCCC-cccc-CCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCC---hhhhcc
Q psy2298 106 ELIKLKDDLIAETATPPM-FLKC-DVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLE---IGEVAA 180 (366)
Q Consensus 106 ~l~~lk~~~i~~~a~pp~-~i~~-Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LP---I~~L~a 180 (366)
++++--...++.|.+..+ .+.. |.+.++|.+ ..||.|.-|||.=. ...+....+++|-.== ..+.+.
T Consensus 230 ~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~--~~vdaIatDPPYGr------st~~~~~~l~~Ly~~~le~~~evLk 301 (347)
T COG1041 230 RMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD--NSVDAIATDPPYGR------STKIKGEGLDELYEEALESASEVLK 301 (347)
T ss_pred HHHhhhhhhhhhhCcCceeEEEecccccCCCCC--CccceEEecCCCCc------ccccccccHHHHHHHHHHHHHHHhh
Confidence 444455566677776666 4555 888888542 36999999999743 2234444555543222 234455
Q ss_pred CCeEEEEecCCCcchHHHHHHHHhcCcEEEee
Q psy2298 181 ARSFVFLWCGSSEGLDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 181 ~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~ 212 (366)
+.|++.+|+.-.+ . ..+..=||++...
T Consensus 302 ~gG~~vf~~p~~~-~----~~~~~~~f~v~~~ 328 (347)
T COG1041 302 PGGRIVFAAPRDP-R----HELEELGFKVLGR 328 (347)
T ss_pred cCcEEEEecCCcc-h----hhHhhcCceEEEE
Confidence 6789999988421 2 3445557877764
No 30
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=60.17 E-value=24 Score=33.51 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=32.9
Q ss_pred hhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEeeEEEEEeCC
Q psy2298 177 EVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWIRTNA 220 (366)
Q Consensus 177 ~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~~vWvK~t~ 220 (366)
.++-+.|.+++.++. +........++.-||.+...++|.|.+.
T Consensus 87 rvl~~~~~~~v~~~~-~~~~~~~~~~~~~gf~~~~~iiw~k~~~ 129 (302)
T COG0863 87 RVLKPGGSLYVIDPF-SNLARIEDIAKKLGFEILGKIIWKKPSP 129 (302)
T ss_pred heecCCCEEEEECCc-hhhhHHHHHHHhCCCeEeeeEEEeCCCC
Confidence 344567788888886 3455555677779999999999999876
No 31
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=57.28 E-value=30 Score=36.27 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHHHhhCCCCCccccCCccccccccCCcccEEEECCCCcccccc---cccccC-CCC-------C---HHHHHcCChhhh
Q psy2298 113 DLIAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRT---LGVTNM-QGW-------S---WDQIMQLEIGEV 178 (366)
Q Consensus 113 ~~i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~---~G~~~Y-~tm-------s---~~eI~~LPI~~L 178 (366)
+.++.....-.++++|+....+.. ..+||+|+.|||.-..... .....| +.+ . +..|.. -++++
T Consensus 293 eNa~~~g~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~-~a~~~ 370 (423)
T PRK14966 293 KNAADLGARVEFAHGSWFDTDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQ-GAPDR 370 (423)
T ss_pred HHHHHcCCcEEEEEcchhcccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHH-HHHHh
Confidence 334444333347777875443321 3479999999997422110 000000 000 0 112221 23456
Q ss_pred ccCCeEEEEecCCCcchHHHHHHHHhcCcEEEee
Q psy2298 179 AAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 179 ~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~ 212 (366)
+.++|++++=+... ..+...++|++=||..++.
T Consensus 371 LkpgG~lilEiG~~-Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 371 LAEGGFLLLEHGFD-QGAAVRGVLAENGFSGVET 403 (423)
T ss_pred cCCCcEEEEEECcc-HHHHHHHHHHHCCCcEEEE
Confidence 67889877655553 4566677888878865543
No 32
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=56.19 E-value=22 Score=28.37 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=29.3
Q ss_pred hhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEeeEEEE
Q psy2298 175 IGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWI 216 (366)
Q Consensus 175 I~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~~vWv 216 (366)
+.++.+..-..++++.. ....+..++++=||+.+++-.||
T Consensus 47 ~~~~~~~g~~~~l~v~~--~N~~s~~ly~klGf~~~~~~~wv 86 (86)
T PF08445_consen 47 ARELLERGKTPFLYVDA--DNEASIRLYEKLGFREIEEEYWV 86 (86)
T ss_dssp HHHHHHTTSEEEEEEET--T-HHHHHHHHHCT-EEEEEEEEE
T ss_pred HHHHHhCCCcEEEEEEC--CCHHHHHHHHHcCCEEEEEEEeC
Confidence 34555555577777765 25778889999999999999997
No 33
>PRK03612 spermidine synthase; Provisional
Probab=56.18 E-value=26 Score=37.23 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=43.5
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcc-----hHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEG-----LDQG 198 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~-----L~~~ 198 (366)
.+..|.+.+ +.....+||+|++|+|-.... .....++ .|+.+. +.+++.++|.+.+++++ +. +...
T Consensus 358 vi~~Da~~~-l~~~~~~fDvIi~D~~~~~~~-----~~~~L~t-~ef~~~-~~~~L~pgG~lv~~~~~-~~~~~~~~~~i 428 (521)
T PRK03612 358 VVNDDAFNW-LRKLAEKFDVIIVDLPDPSNP-----ALGKLYS-VEFYRL-LKRRLAPDGLLVVQSTS-PYFAPKAFWSI 428 (521)
T ss_pred EEEChHHHH-HHhCCCCCCEEEEeCCCCCCc-----chhccch-HHHHHH-HHHhcCCCeEEEEecCC-cccchHHHHHH
Confidence 455666554 233456999999998743211 0011123 333322 33566799999998875 33 2334
Q ss_pred HHHHHhcCc
Q psy2298 199 RNCLRKWGF 207 (366)
Q Consensus 199 ~ell~~WGF 207 (366)
.+.+++=||
T Consensus 429 ~~~l~~~gf 437 (521)
T PRK03612 429 EATLEAAGL 437 (521)
T ss_pred HHHHHHcCC
Confidence 566777788
No 34
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=55.24 E-value=65 Score=31.15 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=47.2
Q ss_pred HHHHHhhCCC--CCccccCCccccccccCCcccEEEECCCCcccccc--c-ccccCCC----------C-CHHHHHcCCh
Q psy2298 112 DDLIAETATP--PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRT--L-GVTNMQG----------W-SWDQIMQLEI 175 (366)
Q Consensus 112 ~~~i~~~a~p--p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~--~-G~~~Y~t----------m-s~~eI~~LPI 175 (366)
.+.++.+... -.|+++|+... +. +.+||+|+.|||+-..... . ....|.. + .+..|.+ -+
T Consensus 155 ~~n~~~~~~~~~v~~~~~d~~~~-~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~-~a 230 (284)
T TIGR00536 155 EENAEKNQLEHRVEFIQSNLFEP-LA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIE-LA 230 (284)
T ss_pred HHHHHHcCCCCcEEEEECchhcc-Cc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHH-HH
Confidence 3344444443 23677775431 11 2389999999998643210 0 0001110 0 0112222 13
Q ss_pred hhhccCCeEEEEecCCCcchHHHHHHHH-hcCcEEE
Q psy2298 176 GEVAAARSFVFLWCGSSEGLDQGRNCLR-KWGFRRC 210 (366)
Q Consensus 176 ~~L~a~~g~lFlWvTn~~~L~~~~ell~-~WGFr~v 210 (366)
..++.++|++++=+++. +-+...++|. +-||..+
T Consensus 231 ~~~L~~gG~l~~e~g~~-q~~~~~~~~~~~~~~~~~ 265 (284)
T TIGR00536 231 PDYLKPNGFLVCEIGNW-QQKSLKELLRIKFTWYDV 265 (284)
T ss_pred HHhccCCCEEEEEECcc-HHHHHHHHHHhcCCCcee
Confidence 45566888887777763 3445566776 3466433
No 35
>KOG3420|consensus
Probab=54.84 E-value=7.6 Score=35.55 Aligned_cols=28 Identities=36% Similarity=0.710 Sum_probs=22.8
Q ss_pred CccccCCccccccccCCcccEEEECCCCcc
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
-+++||+....+. ++.||+.+||||+-.
T Consensus 99 dlLqcdildle~~--~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 99 DLLQCDILDLELK--GGIFDTAVINPPFGT 126 (185)
T ss_pred heeeeeccchhcc--CCeEeeEEecCCCCc
Confidence 4689998887655 479999999999953
No 36
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=54.63 E-value=15 Score=33.28 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=24.1
Q ss_pred hHHHHHhHHHHHHhhCCCCC--ccccCCccccccccCCcccEEEECCCCcc
Q psy2298 104 LRELIKLKDDLIAETATPPM--FLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 104 l~~l~~lk~~~i~~~a~pp~--~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
-.+.++.-.+.+..+...-. +.++|...+. .....||+|+.||||-.
T Consensus 70 ~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~--~~~~~~d~IvtnPPyG~ 118 (179)
T PF01170_consen 70 DPKAVRGARENLKAAGVEDYIDFIQWDARELP--LPDGSVDAIVTNPPYGR 118 (179)
T ss_dssp SHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG--GTTSBSCEEEEE--STT
T ss_pred CHHHHHHHHHHHHhcccCCceEEEecchhhcc--cccCCCCEEEECcchhh
Confidence 34444444444554444322 4555666655 22358999999999954
No 37
>KOG3350|consensus
Probab=54.37 E-value=5.4 Score=37.40 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=13.1
Q ss_pred cCCcccEEEECCCCcc
Q psy2298 137 LNVKFDVIHIEPPLEE 152 (366)
Q Consensus 137 l~~kFDVIliDPPW~~ 152 (366)
+..+||+|++|||.-.
T Consensus 132 lk~~fdiivaDPPfL~ 147 (217)
T KOG3350|consen 132 LKAHFDIIVADPPFLS 147 (217)
T ss_pred HHhcccEEEeCCcccc
Confidence 3468999999999853
No 38
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=54.09 E-value=6.4 Score=38.92 Aligned_cols=64 Identities=20% Similarity=0.435 Sum_probs=31.0
Q ss_pred ccccCCccccccc--cCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcch
Q psy2298 124 FLKCDVKEFNLKE--LNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGL 195 (366)
Q Consensus 124 ~i~~Dl~~~~l~~--l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L 195 (366)
|+..|+-.+ +.. -+.+||+|++|||=-.++. .. . .-.+.+|... .-+|+.++|+|+ =|+++.++
T Consensus 178 ~~~~Dvf~~-l~~~~~~~~fD~IIlDPPsF~k~~-~~-~---~~~y~~L~~~-a~~ll~~gG~l~-~~scs~~i 243 (286)
T PF10672_consen 178 FIQGDVFKF-LKRLKKGGRFDLIILDPPSFAKSK-FD-L---ERDYKKLLRR-AMKLLKPGGLLL-TCSCSHHI 243 (286)
T ss_dssp EEES-HHHH-HHHHHHTT-EEEEEE--SSEESST-CE-H---HHHHHHHHHH-HHHTEEEEEEEE-EEE--TTS
T ss_pred EEecCHHHH-HHHHhcCCCCCEEEECCCCCCCCH-HH-H---HHHHHHHHHH-HHHhcCCCCEEE-EEcCCccc
Confidence 777887553 222 2469999999999332211 00 0 0123455443 336777899875 45555444
No 39
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=53.90 E-value=22 Score=36.40 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=38.9
Q ss_pred ccccCCccccccc---cCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHH
Q psy2298 124 FLKCDVKEFNLKE---LNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRN 200 (366)
Q Consensus 124 ~i~~Dl~~~~l~~---l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~e 200 (366)
|+..|+..+ +.. .+..||+|++|||.. | +..+-|.. +.++ .+.+++++=|.- ..+..-.+
T Consensus 344 ~~~~d~~~~-l~~~~~~~~~~D~vi~dPPr~------G------~~~~~l~~--l~~l-~~~~ivyvsc~p-~tlard~~ 406 (431)
T TIGR00479 344 FLAGTLETV-LPKQPWAGQIPDVLLLDPPRK------G------CAAEVLRT--IIEL-KPERIVYVSCNP-ATLARDLE 406 (431)
T ss_pred EEeCCHHHH-HHHHHhcCCCCCEEEECcCCC------C------CCHHHHHH--HHhc-CCCEEEEEcCCH-HHHHHHHH
Confidence 667776543 122 134799999999942 3 22222222 2223 356777774442 23444455
Q ss_pred HHHhcCcEEE
Q psy2298 201 CLRKWGFRRC 210 (366)
Q Consensus 201 ll~~WGFr~v 210 (366)
.|.+.||+..
T Consensus 407 ~l~~~gy~~~ 416 (431)
T TIGR00479 407 FLCKEGYGIT 416 (431)
T ss_pred HHHHCCeeEE
Confidence 6778888644
No 40
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=53.41 E-value=23 Score=35.83 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=29.9
Q ss_pred cccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEE
Q psy2298 140 KFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 140 kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~v 210 (366)
+||+|++|||- .| +..+-|..| +..+++|++=|.-. .+..-...|.. ||+..
T Consensus 288 ~~D~v~lDPPR------~G------~~~~~l~~l-----~~~~~ivyvSC~p~-tlarDl~~L~~-gY~l~ 339 (362)
T PRK05031 288 NFSTIFVDPPR------AG------LDDETLKLV-----QAYERILYISCNPE-TLCENLETLSQ-THKVE 339 (362)
T ss_pred CCCEEEECCCC------CC------CcHHHHHHH-----HccCCEEEEEeCHH-HHHHHHHHHcC-CcEEE
Confidence 69999999993 13 232333332 12377888877752 34433344544 88655
No 41
>PRK14967 putative methyltransferase; Provisional
Probab=53.12 E-value=69 Score=29.58 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHhhCCCCCccccCCccccccccCCcccEEEECCCCcccccc----cccc-cCC-----CCCHHHHHcCChhhhccCCe
Q psy2298 114 LIAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRT----LGVT-NMQ-----GWSWDQIMQLEIGEVAAARS 183 (366)
Q Consensus 114 ~i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~----~G~~-~Y~-----tms~~eI~~LPI~~L~a~~g 183 (366)
.+......-.++..|+... + ...+||+|++|||+...+.. ++.. .+. ...++.+.+ -+.+++.++|
T Consensus 78 n~~~~~~~~~~~~~d~~~~-~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~Lk~gG 153 (223)
T PRK14967 78 NALLAGVDVDVRRGDWARA-V--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCD-AAPALLAPGG 153 (223)
T ss_pred HHHHhCCeeEEEECchhhh-c--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHH-HHHHhcCCCc
Confidence 3333333333556665432 1 13589999999998643211 0100 000 000122221 2345566777
Q ss_pred EEEE-ecCCCcchHHHHHHHHhcCcEEE
Q psy2298 184 FVFL-WCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 184 ~lFl-WvTn~~~L~~~~ell~~WGFr~v 210 (366)
.+++ -.+. .......+.++.=||.+.
T Consensus 154 ~l~~~~~~~-~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 154 SLLLVQSEL-SGVERTLTRLSEAGLDAE 180 (223)
T ss_pred EEEEEEecc-cCHHHHHHHHHHCCCCeE
Confidence 5443 2332 235677778887787644
No 42
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=52.36 E-value=45 Score=32.01 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=22.7
Q ss_pred HHHHHhhCCCC-CccccCCccccccccCCcccEEEECCCCc
Q psy2298 112 DDLIAETATPP-MFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 112 ~~~i~~~a~pp-~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
.+.+++..... ..+..|.+.+. .....||+|++|||-.
T Consensus 113 ~~n~~~~g~~~v~~~~~D~~~~~--~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 113 IANINRCGVLNVAVTNFDGRVFG--AAVPKFDAILLDAPCS 151 (264)
T ss_pred HHHHHHcCCCcEEEecCCHHHhh--hhccCCCEEEEcCCCC
Confidence 34445554433 24566665543 2234699999999965
No 43
>PRK10742 putative methyltransferase; Provisional
Probab=52.27 E-value=8.8 Score=37.40 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=15.3
Q ss_pred cccCCcccEEEECCCCcccc
Q psy2298 135 KELNVKFDVIHIEPPLEEYQ 154 (366)
Q Consensus 135 ~~l~~kFDVIliDPPW~~~s 154 (366)
..+...|||||+|||.+...
T Consensus 159 ~~~~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 159 TDITPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred hhCCCCCcEEEECCCCCCCc
Confidence 34445899999999998643
No 44
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=51.34 E-value=12 Score=38.56 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=41.5
Q ss_pred HHhHHHHHHhhCCC-C--CccccCCccc--cccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCC
Q psy2298 108 IKLKDDLIAETATP-P--MFLKCDVKEF--NLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAAR 182 (366)
Q Consensus 108 ~~lk~~~i~~~a~p-p--~~i~~Dl~~~--~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~ 182 (366)
+++=.+.++...+. . .++++|+..+ .+..-+.+||+|++|||--..+. .......-.+.+|..+-. +++.++
T Consensus 256 l~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k--~~l~~~~~~y~~l~~~a~-~lLk~g 332 (396)
T PRK15128 256 LDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENK--SQLMGACRGYKDINMLAI-QLLNPG 332 (396)
T ss_pred HHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCCh--HHHHHHHHHHHHHHHHHH-HHcCCC
Confidence 33444555555553 2 3788887654 12222468999999999632211 000000013445544433 466678
Q ss_pred eEEEEecCC
Q psy2298 183 SFVFLWCGS 191 (366)
Q Consensus 183 g~lFlWvTn 191 (366)
|+++.=.++
T Consensus 333 G~lv~~scs 341 (396)
T PRK15128 333 GILLTFSCS 341 (396)
T ss_pred eEEEEEeCC
Confidence 866644443
No 45
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=49.63 E-value=94 Score=30.72 Aligned_cols=100 Identities=12% Similarity=0.192 Sum_probs=50.6
Q ss_pred HHhHHHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccc---c-ccCCC---------CC-HHHHH
Q psy2298 108 IKLKDDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLG---V-TNMQG---------WS-WDQIM 171 (366)
Q Consensus 108 ~~lk~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G---~-~~Y~t---------ms-~~eI~ 171 (366)
++.=.+.++.+.... .++++|+... +. ..+||+|+.|||.-....... . .+.+. +. +..|.
T Consensus 170 l~~A~~n~~~~~l~~~i~~~~~D~~~~-l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~ 246 (307)
T PRK11805 170 LAVAEINIERHGLEDRVTLIESDLFAA-LP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRIL 246 (307)
T ss_pred HHHHHHHHHHhCCCCcEEEEECchhhh-CC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHH
Confidence 333344455554432 2677776331 11 347999999999753211000 0 00010 00 11222
Q ss_pred cCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEeeEEEEEeC
Q psy2298 172 QLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWIRTN 219 (366)
Q Consensus 172 ~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~~vWvK~t 219 (366)
+ -+.+++.++|.+++-+... .+...++|..=| ++|+...
T Consensus 247 ~-~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~~------~~~~~~~ 285 (307)
T PRK11805 247 A-EAPDYLTEDGVLVVEVGNS--RVHLEEAYPDVP------FTWLEFE 285 (307)
T ss_pred H-HHHHhcCCCCEEEEEECcC--HHHHHHHHhhCC------CEEEEec
Confidence 2 2335567899999888764 344566776533 5565543
No 46
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=48.64 E-value=30 Score=35.09 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=37.8
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
|+.+|+..+. .....+||+|++|||.. | +..+-|..|- .+ +++++|++=|... .+..=...|
T Consensus 285 ~~~~d~~~~~-~~~~~~~D~vi~DPPr~------G------~~~~~l~~l~--~~-~p~~ivyvsc~p~-TlaRDl~~L- 346 (374)
T TIGR02085 285 FAALDSAKFA-TAQMSAPELVLVNPPRR------G------IGKELCDYLS--QM-APKFILYSSCNAQ-TMAKDIAEL- 346 (374)
T ss_pred EEECCHHHHH-HhcCCCCCEEEECCCCC------C------CcHHHHHHHH--hc-CCCeEEEEEeCHH-HHHHHHHHh-
Confidence 7778876653 22234699999999952 3 2222223321 23 4678888887642 232222234
Q ss_pred hcCcEEE
Q psy2298 204 KWGFRRC 210 (366)
Q Consensus 204 ~WGFr~v 210 (366)
=||+..
T Consensus 347 -~gy~l~ 352 (374)
T TIGR02085 347 -SGYQIE 352 (374)
T ss_pred -cCceEE
Confidence 367654
No 47
>PRK01581 speE spermidine synthase; Validated
Probab=47.83 E-value=47 Score=34.25 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=44.6
Q ss_pred cccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchH----HHHH
Q psy2298 125 LKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLD----QGRN 200 (366)
Q Consensus 125 i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~----~~~e 200 (366)
+.+|...+ +.....+||||++|.|-.... ......+ .++.+. +.+.+.++|++.+|.++..... ....
T Consensus 212 vi~Da~~f-L~~~~~~YDVIIvDl~DP~~~-----~~~~LyT-~EFy~~-~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~ 283 (374)
T PRK01581 212 HVCDAKEF-LSSPSSLYDVIIIDFPDPATE-----LLSTLYT-SELFAR-IATFLTEDGAFVCQSNSPADAPLVYWSIGN 283 (374)
T ss_pred EECcHHHH-HHhcCCCccEEEEcCCCcccc-----chhhhhH-HHHHHH-HHHhcCCCcEEEEecCChhhhHHHHHHHHH
Confidence 33444433 233456899999998743211 0011112 233332 3455679999999987631111 1234
Q ss_pred HHHhcCcEEEeeEEEE
Q psy2298 201 CLRKWGFRRCEDICWI 216 (366)
Q Consensus 201 ll~~WGFr~ve~~vWv 216 (366)
.|++=||....-.+++
T Consensus 284 tL~~af~~v~~y~t~v 299 (374)
T PRK01581 284 TIEHAGLTVKSYHTIV 299 (374)
T ss_pred HHHHhCCceEEEEEec
Confidence 5666677665555543
No 48
>PRK00811 spermidine synthase; Provisional
Probab=47.32 E-value=17 Score=35.39 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=33.6
Q ss_pred ccccCCccccccccCCcccEEEECC--CCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEP--PLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDP--PW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
.+..|...+- .....+||||++|. ||.. .....+ .++.+. +.+++.++|++.+|+.+
T Consensus 135 v~~~Da~~~l-~~~~~~yDvIi~D~~dp~~~--------~~~l~t-~ef~~~-~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 135 LVIGDGIKFV-AETENSFDVIIVDSTDPVGP--------AEGLFT-KEFYEN-CKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEECchHHHH-hhCCCcccEEEECCCCCCCc--------hhhhhH-HHHHHH-HHHhcCCCcEEEEeCCC
Confidence 5566655542 22356899999994 5411 001112 333222 44667899999999886
No 49
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=44.62 E-value=62 Score=33.48 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=40.1
Q ss_pred CccccCCcccc--ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHH
Q psy2298 123 MFLKCDVKEFN--LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRN 200 (366)
Q Consensus 123 ~~i~~Dl~~~~--l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~e 200 (366)
.|+++|+...- +......||+|++|||+. | +. +.+.. +.++ ..++++++=|.-. .+..=..
T Consensus 348 ~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~------g------~~-~~~~~--l~~~-~~~~ivyvSCnp~-tlaRDl~ 410 (443)
T PRK13168 348 TFYHANLEEDFTDQPWALGGFDKVLLDPPRA------G------AA-EVMQA--LAKL-GPKRIVYVSCNPA-TLARDAG 410 (443)
T ss_pred EEEEeChHHhhhhhhhhcCCCCEEEECcCCc------C------hH-HHHHH--HHhc-CCCeEEEEEeChH-HhhccHH
Confidence 47788876531 111235799999999974 2 11 22222 2223 4688888877542 2333233
Q ss_pred HHHhcCcEEEe
Q psy2298 201 CLRKWGFRRCE 211 (366)
Q Consensus 201 ll~~WGFr~ve 211 (366)
.|..=||+...
T Consensus 411 ~L~~~gY~l~~ 421 (443)
T PRK13168 411 VLVEAGYRLKR 421 (443)
T ss_pred HHhhCCcEEEE
Confidence 56556886653
No 50
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=43.65 E-value=31 Score=30.62 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHhHHHHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeE
Q psy2298 106 ELIKLKDDLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSF 184 (366)
Q Consensus 106 ~l~~lk~~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~ 184 (366)
+.+++-.+.+...... -.++.+|+... +. ..+||+|+++||+..... .| .....++..- ..+++.++|.
T Consensus 66 ~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~--~~~fD~Iv~NPP~~~~~~-~~-----~~~~~~~i~~-a~~~Lk~~G~ 135 (170)
T PF05175_consen 66 DALELAKRNAERNGLENVEVVQSDLFEA-LP--DGKFDLIVSNPPFHAGGD-DG-----LDLLRDFIEQ-ARRYLKPGGR 135 (170)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEESSTTTT-CC--TTCEEEEEE---SBTTSH-CH-----HHHHHHHHHH-HHHHEEEEEE
T ss_pred HHHHHHHHHHHhcCcccccccccccccc-cc--ccceeEEEEccchhcccc-cc-----hhhHHHHHHH-HHHhccCCCE
Confidence 3344445555555554 34566675332 11 479999999999753110 00 0122333322 3456678887
Q ss_pred EEE
Q psy2298 185 VFL 187 (366)
Q Consensus 185 lFl 187 (366)
+++
T Consensus 136 l~l 138 (170)
T PF05175_consen 136 LFL 138 (170)
T ss_dssp EEE
T ss_pred EEE
Confidence 755
No 51
>PHA03411 putative methyltransferase; Provisional
Probab=42.59 E-value=14 Score=36.47 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=45.9
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccc--c-------ccccCCCCCHHHHHcCChhhhccCCe-EEEEecCCCc
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRT--L-------GVTNMQGWSWDQIMQLEIGEVAAARS-FVFLWCGSSE 193 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~--~-------G~~~Y~tms~~eI~~LPI~~L~a~~g-~lFlWvTn~~ 193 (366)
++++|+..+.. ..+||+|++||||-..... . |...+..++.+.+.+ ++..++.+.| +.|+.-+. +
T Consensus 113 ~v~~D~~e~~~---~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~-~v~~~L~p~G~~~~~yss~-~ 187 (279)
T PHA03411 113 WITSDVFEFES---NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA-DVGYFIVPTGSAGFAYSGR-P 187 (279)
T ss_pred EEECchhhhcc---cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHh-hhHheecCCceEEEEEecc-c
Confidence 77888876642 3689999999999753221 0 111222233332221 3444554555 66665553 3
Q ss_pred c----h--HHHHHHHHhcCcEEE
Q psy2298 194 G----L--DQGRNCLRKWGFRRC 210 (366)
Q Consensus 194 ~----L--~~~~ell~~WGFr~v 210 (366)
. | +.-+.+++.=||...
T Consensus 188 ~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 188 YYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred cccccCCHHHHHHHHHhcCcEec
Confidence 2 2 233568999999754
No 52
>PHA03412 putative methyltransferase; Provisional
Probab=40.06 E-value=26 Score=33.99 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=21.2
Q ss_pred ccccCCccccccccCCcccEEEECCCCccc
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEY 153 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~ 153 (366)
++.+|+..+++ ..+||+|+.+||.-..
T Consensus 101 ~~~~D~~~~~~---~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 101 WINADALTTEF---DTLFDMAISNPPFGKI 127 (241)
T ss_pred EEEcchhcccc---cCCccEEEECCCCCCc
Confidence 78888876553 3589999999998753
No 53
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=38.59 E-value=49 Score=28.39 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=30.2
Q ss_pred HHHHHhHHHHHHhhCCC-CCccccCCccccccccCCcccEEEECCCC
Q psy2298 105 RELIKLKDDLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPL 150 (366)
Q Consensus 105 ~~l~~lk~~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW 150 (366)
.+.++.=.+.+++...+ -.|+.+|+..++-. +..+||+|+.++++
T Consensus 38 ~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I~~~~~l 83 (152)
T PF13847_consen 38 EEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDIIISNGVL 83 (152)
T ss_dssp HHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEEEEESTG
T ss_pred HHHHHHhhcccccccccccceEEeehhccccc-cCCCeeEEEEcCch
Confidence 45555555555555555 23888999887622 22699999998776
No 54
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=37.51 E-value=53 Score=28.46 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=40.2
Q ss_pred ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEE
Q psy2298 134 LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 134 l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~v 210 (366)
+..+...||+|+.|+==+ ..+-.+|+.+-+.+| ..++.++|.+.-++.++ ..++-|..=||.+.
T Consensus 44 l~~l~~~~Da~ylDgFsP-------~~nPelWs~e~~~~l--~~~~~~~~~l~Tys~a~----~Vr~~L~~aGF~v~ 107 (124)
T PF05430_consen 44 LPQLDARFDAWYLDGFSP-------AKNPELWSEELFKKL--ARLSKPGGTLATYSSAG----AVRRALQQAGFEVE 107 (124)
T ss_dssp HHHB-T-EEEEEE-SS-T-------TTSGGGSSHHHHHHH--HHHEEEEEEEEES--BH----HHHHHHHHCTEEEE
T ss_pred HHhCcccCCEEEecCCCC-------cCCcccCCHHHHHHH--HHHhCCCcEEEEeechH----HHHHHHHHcCCEEE
Confidence 455668999999996211 122246787777655 57788888888888863 35667888899764
No 55
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=36.94 E-value=2e+02 Score=25.97 Aligned_cols=75 Identities=24% Similarity=0.247 Sum_probs=42.2
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEE-ecCCCcchHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFL-WCGSSEGLDQGRNCL 202 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFl-WvTn~~~L~~~~ell 202 (366)
++..|...+ +..+...||+|+++.... ...++.. -+.+++.+.|.+++ |++- ..+..+.++|
T Consensus 96 ~~~~d~~~~-l~~~~~~~D~V~~~~~~~--------------~~~~~l~-~~~~~LkpgG~lv~~~~~~-~~~~~~~~~l 158 (198)
T PRK00377 96 LIKGEAPEI-LFTINEKFDRIFIGGGSE--------------KLKEIIS-ASWEIIKKGGRIVIDAILL-ETVNNALSAL 158 (198)
T ss_pred EEEechhhh-HhhcCCCCCEEEECCCcc--------------cHHHHHH-HHHHHcCCCcEEEEEeecH-HHHHHHHHHH
Confidence 455565443 233446899999964221 1222222 12234557775554 7665 4577888899
Q ss_pred HhcCcEEEeeEEEE
Q psy2298 203 RKWGFRRCEDICWI 216 (366)
Q Consensus 203 ~~WGFr~ve~~vWv 216 (366)
+.=|| -.+.+-|.
T Consensus 159 ~~~g~-~~~~~~~~ 171 (198)
T PRK00377 159 ENIGF-NLEITEVI 171 (198)
T ss_pred HHcCC-CeEEEEEe
Confidence 88899 34444444
No 56
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=35.90 E-value=29 Score=34.19 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=42.0
Q ss_pred HHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
+.++..... -.|++.|+..+... ....||+|++|||.. |. . . ...+.|.. + .++.++++=|..
T Consensus 213 ~n~~~~~l~~v~~~~~D~~~~~~~-~~~~~D~Vv~dPPr~------G~-~-~-~~~~~l~~-----~-~~~~ivyvsc~p 276 (315)
T PRK03522 213 QSAAELGLTNVQFQALDSTQFATA-QGEVPDLVLVNPPRR------GI-G-K-ELCDYLSQ-----M-APRFILYSSCNA 276 (315)
T ss_pred HHHHHcCCCceEEEEcCHHHHHHh-cCCCCeEEEECCCCC------Cc-c-H-HHHHHHHH-----c-CCCeEEEEECCc
Confidence 334444443 34788888766422 234799999999942 31 0 0 01122322 2 346788877765
Q ss_pred CcchHHHHHHHHhcCcEEE
Q psy2298 192 SEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 192 ~~~L~~~~ell~~WGFr~v 210 (366)
. .+..-.+.|. ||+..
T Consensus 277 ~-t~~rd~~~l~--~y~~~ 292 (315)
T PRK03522 277 Q-TMAKDLAHLP--GYRIE 292 (315)
T ss_pred c-cchhHHhhcc--CcEEE
Confidence 3 3444334452 66654
No 57
>KOG2671|consensus
Probab=35.63 E-value=27 Score=35.97 Aligned_cols=40 Identities=28% Similarity=0.433 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCCccccCCcccccccc----CCcccEEEECCCCccc
Q psy2298 112 DDLIAETATPPMFLKCDVKEFNLKEL----NVKFDVIHIEPPLEEY 153 (366)
Q Consensus 112 ~~~i~~~a~pp~~i~~Dl~~~~l~~l----~~kFDVIliDPPW~~~ 153 (366)
.+..++|...|+|+ |+-.+|+++- +..||.|+.|||.-.+
T Consensus 254 ~aNFkQYg~~~~fl--dvl~~D~sn~~~rsn~~fDaIvcDPPYGVR 297 (421)
T KOG2671|consen 254 KANFKQYGSSSQFL--DVLTADFSNPPLRSNLKFDAIVCDPPYGVR 297 (421)
T ss_pred hHhHHHhCCcchhh--heeeecccCcchhhcceeeEEEeCCCcchh
Confidence 45567888888875 4444443322 5799999999998653
No 58
>KOG3191|consensus
Probab=34.77 E-value=1.2e+02 Score=28.80 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=45.9
Q ss_pred CcccEEEECCCCccccc-ccc--------cccCCCCCHHHHHcCC--hhhhccCCeEEEEecCCCcchHHHHHHHHhcCc
Q psy2298 139 VKFDVIHIEPPLEEYQR-TLG--------VTNMQGWSWDQIMQLE--IGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGF 207 (366)
Q Consensus 139 ~kFDVIliDPPW~~~s~-~~G--------~~~Y~tms~~eI~~LP--I~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGF 207 (366)
.+-||++-+||.--.+. ..| ...+..| +-+..|. |++|++++|++++=+..+-..+..++.|++-||
T Consensus 109 ~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr--~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 109 ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGR--EVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGY 186 (209)
T ss_pred CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchH--HHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccc
Confidence 79999999999864322 111 0112223 2234444 889999999888776654456777889998888
Q ss_pred EEE
Q psy2298 208 RRC 210 (366)
Q Consensus 208 r~v 210 (366)
...
T Consensus 187 ~~~ 189 (209)
T KOG3191|consen 187 GVR 189 (209)
T ss_pred cee
Confidence 654
No 59
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=33.29 E-value=22 Score=34.48 Aligned_cols=42 Identities=12% Similarity=0.329 Sum_probs=18.9
Q ss_pred CcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhh-ccCCeEEEEecCC
Q psy2298 139 VKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEV-AAARSFVFLWCGS 191 (366)
Q Consensus 139 ~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L-~a~~g~lFlWvTn 191 (366)
.+=.+|+||||++..+ .++.+...=..-+ --..|.+.||-.-
T Consensus 124 ~rRglVLIDPpYE~~~-----------dy~~v~~~l~~a~kR~~~G~~~iWYPi 166 (245)
T PF04378_consen 124 ERRGLVLIDPPYEQKD-----------DYQRVVDALAKALKRWPTGVYAIWYPI 166 (245)
T ss_dssp TS-EEEEE-----STT-----------HHHHHHHHHHHHHHH-TTSEEEEEEEE
T ss_pred CCCeEEEECCCCCCch-----------HHHHHHHHHHHHHHhcCCcEEEEEeec
Confidence 4567999999998543 2233322111111 1257899999765
No 60
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=33.17 E-value=25 Score=29.15 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=13.0
Q ss_pred cccEEEECCCCcccc
Q psy2298 140 KFDVIHIEPPLEEYQ 154 (366)
Q Consensus 140 kFDVIliDPPW~~~s 154 (366)
+||||+-+|||-...
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 799999999998644
No 61
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=32.15 E-value=31 Score=34.64 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=32.4
Q ss_pred HHHHHhHHHHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcc
Q psy2298 105 RELIKLKDDLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 105 ~~l~~lk~~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
.+|+++-.+.+++.... ---+..|++.-==..+..+|||++-|||-..
T Consensus 185 ERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi 233 (354)
T COG1568 185 ERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETI 233 (354)
T ss_pred HHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchhhH
Confidence 58888888888887764 1123445544322344589999999999754
No 62
>PLN02823 spermine synthase
Probab=31.31 E-value=58 Score=32.89 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=28.7
Q ss_pred cccCCcccEEEECCC--CcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 135 KELNVKFDVIHIEPP--LEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 135 ~~l~~kFDVIliDPP--W~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
.....+||||++|.+ +.. | ..+...+.+-+..+ +.+++.++|++.+|++.
T Consensus 171 ~~~~~~yDvIi~D~~dp~~~-----~-~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 171 EKRDEKFDVIIGDLADPVEG-----G-PCYQLYTKSFYERI-VKPKLNPGGIFVTQAGP 222 (336)
T ss_pred hhCCCCccEEEecCCCcccc-----C-cchhhccHHHHHHH-HHHhcCCCcEEEEeccC
Confidence 334578999999963 211 1 12223343322212 23566799999999875
No 63
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=31.25 E-value=95 Score=33.00 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=39.7
Q ss_pred CcccEEEECCCCcccccccc----cccCC-CC-------CHHHHHcC--ChhhhccCCeEEEEecCCCcchHHHHHHHHh
Q psy2298 139 VKFDVIHIEPPLEEYQRTLG----VTNMQ-GW-------SWDQIMQL--EIGEVAAARSFVFLWCGSSEGLDQGRNCLRK 204 (366)
Q Consensus 139 ~kFDVIliDPPW~~~s~~~G----~~~Y~-tm-------s~~eI~~L--PI~~L~a~~g~lFlWvTn~~~L~~~~ell~~ 204 (366)
.+||+|+.+||+-....... ...|. .+ .++.+..| .+..++.++|.+++=++.+ +-+...++|.+
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~-q~~~v~~~~~~ 283 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK-QEEAVTQIFLD 283 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc-hHHHHHHHHHh
Confidence 58999999999864322100 00110 00 11112211 3456777889877645443 34556678888
Q ss_pred cCcEEEe
Q psy2298 205 WGFRRCE 211 (366)
Q Consensus 205 WGFr~ve 211 (366)
-||..++
T Consensus 284 ~g~~~~~ 290 (506)
T PRK01544 284 HGYNIES 290 (506)
T ss_pred cCCCceE
Confidence 8886543
No 64
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=29.52 E-value=64 Score=30.99 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=28.0
Q ss_pred CCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 138 NVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 138 ~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
..+||||++|++-.... ....++ .+..+. +.+++.++|++.+++.+
T Consensus 143 ~~~yDvIi~D~~~~~~~------~~~l~~-~ef~~~-~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGP------AETLFT-KEFYEL-LKKALNEDGIFVAQSES 188 (270)
T ss_pred CCCccEEEEeCCCCCCc------ccchhH-HHHHHH-HHHHhCCCcEEEEcCCC
Confidence 46999999998743211 011122 232222 34667899999999775
No 65
>PTZ00146 fibrillarin; Provisional
Probab=26.13 E-value=2.1e+02 Score=28.60 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=43.9
Q ss_pred ccccCCcccc-ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEE-ecCCC----cchH-
Q psy2298 124 FLKCDVKEFN-LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFL-WCGSS----EGLD- 196 (366)
Q Consensus 124 ~i~~Dl~~~~-l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFl-WvTn~----~~L~- 196 (366)
+|.+|++.-+ +..+...||+|++|-. +.....+..+-+..++.+.|.+++ |-..+ +-.+
T Consensus 185 ~I~~Da~~p~~y~~~~~~vDvV~~Dva--------------~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~ 250 (293)
T PTZ00146 185 PIIEDARYPQKYRMLVPMVDVIFADVA--------------QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEV 250 (293)
T ss_pred EEECCccChhhhhcccCCCCEEEEeCC--------------CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHH
Confidence 5778876421 2222247999999832 112233444556777777886555 55442 1112
Q ss_pred ---HHHHHHHhcCcEEEeeEE
Q psy2298 197 ---QGRNCLRKWGFRRCEDIC 214 (366)
Q Consensus 197 ---~~~ell~~WGFr~ve~~v 214 (366)
...+.|++=||+.++.+.
T Consensus 251 ~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 251 VFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred HHHHHHHHHHHcCCceEEEEe
Confidence 224668888999776543
No 66
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=25.33 E-value=42 Score=32.84 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=43.9
Q ss_pred ccccCCcccEEEECCCCccccc---ccccccCCC--------CCHHHHHcC--ChhhhccCCeEEEEecCCCcchHHHHH
Q psy2298 134 LKELNVKFDVIHIEPPLEEYQR---TLGVTNMQG--------WSWDQIMQL--EIGEVAAARSFVFLWCGSSEGLDQGRN 200 (366)
Q Consensus 134 l~~l~~kFDVIliDPPW~~~s~---~~G~~~Y~t--------ms~~eI~~L--PI~~L~a~~g~lFlWvTn~~~L~~~~e 200 (366)
|..+..+||+|+.+||+=.... ..+...|.. =-++-+..+ .++.+..+.|++.+=+.-. ..+...+
T Consensus 170 f~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-q~~~v~~ 248 (280)
T COG2890 170 FEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-QGEAVKA 248 (280)
T ss_pred ccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-cHHHHHH
Confidence 4455569999999999964330 000000100 001111111 3445555677777777753 4566677
Q ss_pred HHHhcCcEEEeeEEEEEeCC
Q psy2298 201 CLRKWGFRRCEDICWIRTNA 220 (366)
Q Consensus 201 ll~~WGFr~ve~~vWvK~t~ 220 (366)
+|.+=|| +.|+++-+
T Consensus 249 ~~~~~~~-----~~~v~~~~ 263 (280)
T COG2890 249 LFEDTGF-----FEIVETLK 263 (280)
T ss_pred HHHhcCC-----ceEEEEEe
Confidence 8888776 45555544
No 67
>KOG1271|consensus
Probab=25.24 E-value=2.3e+02 Score=27.09 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=51.8
Q ss_pred HHHHhHHHHHHhhCCCC---CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCH--HHHHc------CC
Q psy2298 106 ELIKLKDDLIAETATPP---MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSW--DQIMQ------LE 174 (366)
Q Consensus 106 ~l~~lk~~~i~~~a~pp---~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~--~eI~~------LP 174 (366)
+-+.| ++.|+.+.-=+ .|-..||-.=+ .+..+|||||=-=-| +.|++ +.+.. =-
T Consensus 102 ~AV~L-A~niAe~~~~~n~I~f~q~DI~~~~--~~~~qfdlvlDKGT~------------DAisLs~d~~~~r~~~Y~d~ 166 (227)
T KOG1271|consen 102 KAVEL-AQNIAERDGFSNEIRFQQLDITDPD--FLSGQFDLVLDKGTL------------DAISLSPDGPVGRLVVYLDS 166 (227)
T ss_pred HHHHH-HHHHHHhcCCCcceeEEEeeccCCc--ccccceeEEeecCce------------eeeecCCCCcccceeeehhh
Confidence 33444 44555544322 26666765532 234689988853222 22222 11111 13
Q ss_pred hhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEee
Q psy2298 175 IGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 175 I~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~ 212 (366)
|+++++++|++.|=..| --.++-.+-++.-||.+..+
T Consensus 167 v~~ll~~~gifvItSCN-~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 167 VEKLLSPGGIFVITSCN-FTKDELVEEFENFNFEYLST 203 (227)
T ss_pred HhhccCCCcEEEEEecC-ccHHHHHHHHhcCCeEEEEe
Confidence 66778899988877777 34566677889999877644
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=25.13 E-value=1e+02 Score=27.84 Aligned_cols=82 Identities=10% Similarity=0.067 Sum_probs=46.5
Q ss_pred ccccCCcccccccc-CCcccEEEECC--CCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHH
Q psy2298 124 FLKCDVKEFNLKEL-NVKFDVIHIEP--PLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRN 200 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l-~~kFDVIliDP--PW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~e 200 (366)
++++|+..+.-..+ ...||.|++++ ||......+ ..+..+++.+. +.+++.++|.|++-+.+....+...+
T Consensus 70 ~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~-----~r~~~~~~l~~-~~r~LkpgG~l~~~td~~~~~~~~~~ 143 (194)
T TIGR00091 70 VLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNK-----RRITQPHFLKE-YANVLKKGGVIHFKTDNEPLFEDMLK 143 (194)
T ss_pred EEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccc-----cccCCHHHHHH-HHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 67888866531112 24799999985 775432110 11233333322 34566789988887766433455566
Q ss_pred HHH-hcCcEEEe
Q psy2298 201 CLR-KWGFRRCE 211 (366)
Q Consensus 201 ll~-~WGFr~ve 211 (366)
+|. .+||+...
T Consensus 144 ~~~~~~~f~~~~ 155 (194)
T TIGR00091 144 VLSENDLFENTS 155 (194)
T ss_pred HHHhCCCeEecc
Confidence 554 56687764
No 69
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=24.20 E-value=94 Score=34.37 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCceEEEecC
Q psy2298 284 IFHIMEHFCLGRRRLHIFGR 303 (366)
Q Consensus 284 iy~lIE~~~p~~rrLELFAR 303 (366)
...++..++.+.+-|+||+-
T Consensus 529 ~R~~~~~~~~g~rVLDlf~g 548 (702)
T PRK11783 529 TRRMIGQMAKGKDFLNLFAY 548 (702)
T ss_pred HHHHHHHhcCCCeEEEcCCC
Confidence 35778888888899999975
No 70
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=24.00 E-value=90 Score=32.17 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=21.9
Q ss_pred HHhhCCCCCccccCCccccccccCCcccEEEECCCCc
Q psy2298 115 IAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 115 i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
+++....-.+++.|...+.-..-...||+|++|||-.
T Consensus 288 ~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 288 LQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred HHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 3444333346777776542111135799999999953
No 71
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=23.22 E-value=80 Score=30.54 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=28.2
Q ss_pred CCCCCccccCCccccccccCCcccEEEECCCCccccc
Q psy2298 119 ATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQR 155 (366)
Q Consensus 119 a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~ 155 (366)
..|...+..||..++...+...+|+|+++||-+..|.
T Consensus 41 N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 41 NFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSI 77 (275)
T ss_pred hCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhH
Confidence 4454568889999875553458999999999997664
No 72
>PLN02672 methionine S-methyltransferase
Probab=22.49 E-value=1.7e+02 Score=34.42 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=26.6
Q ss_pred hhhccCCeEEEEecCCCcchHHHH-HHHHhcCcEEEeeE
Q psy2298 176 GEVAAARSFVFLWCGSSEGLDQGR-NCLRKWGFRRCEDI 213 (366)
Q Consensus 176 ~~L~a~~g~lFlWvTn~~~L~~~~-ell~~WGFr~ve~~ 213 (366)
..++.++|++++=++.. +-+... ++|+.-||+.++-|
T Consensus 265 ~~~L~pgG~l~lEiG~~-q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 265 ISVIKPMGIMIFNMGGR-PGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred HHhccCCCEEEEEECcc-HHHHHHHHHHHHCCCCeeEEe
Confidence 34566889999888874 345555 59999998886544
No 73
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=21.24 E-value=1.4e+02 Score=29.98 Aligned_cols=53 Identities=23% Similarity=0.518 Sum_probs=25.3
Q ss_pred CcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEE
Q psy2298 139 VKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 139 ~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~v 210 (366)
.+||+|++|||= +| +.-.-|..+ .++ +=+|++=|--+ .|..=..+|.+ ||+..
T Consensus 277 ~~~d~vilDPPR------~G------~~~~~~~~~--~~~---~~ivYvSCnP~-tlaRDl~~L~~-~y~~~ 329 (352)
T PF05958_consen 277 FKFDAVILDPPR------AG------LDEKVIELI--KKL---KRIVYVSCNPA-TLARDLKILKE-GYKLE 329 (352)
T ss_dssp TTESEEEE---T------T-------SCHHHHHHH--HHS---SEEEEEES-HH-HHHHHHHHHHC-CEEEE
T ss_pred cCCCEEEEcCCC------CC------chHHHHHHH--hcC---CeEEEEECCHH-HHHHHHHHHhh-cCEEE
Confidence 378999999993 35 222222222 222 34777777642 34333345665 88754
No 74
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=20.78 E-value=68 Score=29.17 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=32.0
Q ss_pred cccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEe
Q psy2298 140 KFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 140 kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve 211 (366)
-+-.|-+||.|..... |. +--.-...+-.++-|. =+|+|+|.++ +.|.+|||..++
T Consensus 67 E~~~laV~pd~r~~G~--G~-~Ll~~~~~~Ar~~gi~-------~lf~LTt~~~------~~F~~~GF~~vd 122 (153)
T COG1246 67 ELRSLAVHPDYRGSGR--GE-RLLERLLADARELGIK-------ELFVLTTRSP------EFFAERGFTRVD 122 (153)
T ss_pred eEEEEEECHHhcCCCc--HH-HHHHHHHHHHHHcCCc-------eeeeeecccH------HHHHHcCCeECc
Confidence 5667888998875321 10 0000011112222222 4899998654 699999999885
No 75
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.36 E-value=2.9e+02 Score=28.97 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=39.6
Q ss_pred CccccCCccccccc-cCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHH
Q psy2298 123 MFLKCDVKEFNLKE-LNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNC 201 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~-l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~el 201 (366)
.|+..|...|-... -+..||+|++|||= +|... -.++.|.++. +.-+|++=|-- .-|..=...
T Consensus 344 ~f~~~~ae~~~~~~~~~~~~d~VvvDPPR------~G~~~---~~lk~l~~~~------p~~IvYVSCNP-~TlaRDl~~ 407 (432)
T COG2265 344 EFIAGDAEEFTPAWWEGYKPDVVVVDPPR------AGADR---EVLKQLAKLK------PKRIVYVSCNP-ATLARDLAI 407 (432)
T ss_pred EEEeCCHHHHhhhccccCCCCEEEECCCC------CCCCH---HHHHHHHhcC------CCcEEEEeCCH-HHHHHHHHH
Confidence 35555665553221 24689999999993 45311 0233444432 44467776654 234444457
Q ss_pred HHhcCcE
Q psy2298 202 LRKWGFR 208 (366)
Q Consensus 202 l~~WGFr 208 (366)
|..-||+
T Consensus 408 L~~~gy~ 414 (432)
T COG2265 408 LASTGYE 414 (432)
T ss_pred HHhCCeE
Confidence 8888887
No 76
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=20.35 E-value=45 Score=32.27 Aligned_cols=16 Identities=50% Similarity=0.694 Sum_probs=10.5
Q ss_pred CCcccEEEECCCCccc
Q psy2298 138 NVKFDVIHIEPPLEEY 153 (366)
Q Consensus 138 ~~kFDVIliDPPW~~~ 153 (366)
..+||+|+++|||-..
T Consensus 123 ~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSK 138 (311)
T ss_dssp T--EEEEEEE--CTCE
T ss_pred ccccccccCCCCcccc
Confidence 4699999999999865
No 77
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=20.04 E-value=1.2e+02 Score=31.45 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHhhCCCC-CccccCCccccccccCCcccEEEECCCCc
Q psy2298 113 DLIAETATPP-MFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 113 ~~i~~~a~pp-~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
+.+++..... .++..|...+. ..+...||+|++|||..
T Consensus 293 ~n~~~~g~~~v~~~~~D~~~~~-~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 293 ENAKRLGLTNIETKALDARKVH-EKFAEKFDKILVDAPCS 331 (444)
T ss_pred HHHHHcCCCeEEEEeCCccccc-chhcccCCEEEEcCCCC
Confidence 3444444432 35667766542 12235899999999964
Done!