Query psy2298
Match_columns 366
No_of_seqs 202 out of 536
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 21:07:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g60_A Adenine-specific methyl 98.2 2.1E-06 7.3E-11 80.1 8.0 96 139-249 22-126 (260)
2 1boo_A Protein (N-4 cytosine-s 98.1 9.5E-06 3.2E-10 78.4 10.2 108 138-249 31-154 (323)
3 1eg2_A Modification methylase 98.0 7.9E-06 2.7E-10 79.2 7.7 113 126-249 44-166 (319)
4 2zig_A TTHA0409, putative modi 97.9 3E-05 1E-09 73.6 8.2 214 101-319 4-266 (297)
5 3lpm_A Putative methyltransfer 90.0 0.75 2.6E-05 41.6 7.5 108 107-217 84-202 (259)
6 3evz_A Methyltransferase; NYSG 87.3 1.5 5.3E-05 38.2 7.5 96 112-210 96-201 (230)
7 3q87_B N6 adenine specific DNA 87.1 1.2 4.2E-05 37.7 6.5 79 123-211 64-145 (170)
8 4dzr_A Protein-(glutamine-N5) 81.2 2.9 0.0001 35.4 6.3 85 124-211 83-188 (215)
9 2oo3_A Protein involved in cat 79.6 0.76 2.6E-05 44.0 2.2 42 139-191 158-200 (283)
10 1yb2_A Hypothetical protein TA 79.0 12 0.0004 34.0 10.0 76 124-219 166-241 (275)
11 3tma_A Methyltransferase; thum 78.9 5 0.00017 38.1 7.7 92 106-211 239-335 (354)
12 1dus_A MJ0882; hypothetical pr 78.6 3.3 0.00011 34.3 5.7 80 112-205 91-173 (194)
13 1o54_A SAM-dependent O-methylt 76.8 4.7 0.00016 36.6 6.6 70 124-213 168-237 (277)
14 3grz_A L11 mtase, ribosomal pr 76.6 8 0.00027 33.0 7.7 80 113-211 101-181 (205)
15 1l3i_A Precorrin-6Y methyltran 75.4 6.2 0.00021 32.6 6.5 70 124-210 86-155 (192)
16 3p9n_A Possible methyltransfer 75.1 3 0.0001 35.4 4.5 70 112-191 84-155 (189)
17 2b3t_A Protein methyltransfera 74.6 3.9 0.00013 37.2 5.4 94 113-210 151-258 (276)
18 1wy7_A Hypothetical protein PH 74.1 7.3 0.00025 33.2 6.8 70 123-210 100-170 (207)
19 2frn_A Hypothetical protein PH 73.0 13 0.00045 34.0 8.6 79 113-210 166-252 (278)
20 1ixk_A Methyltransferase; open 72.7 12 0.00042 35.0 8.6 96 114-211 162-271 (315)
21 2pwy_A TRNA (adenine-N(1)-)-me 72.3 7.4 0.00025 34.3 6.5 71 124-213 152-222 (258)
22 3e23_A Uncharacterized protein 70.1 24 0.00082 30.0 9.2 80 123-217 88-184 (211)
23 3mb5_A SAM-dependent methyltra 69.9 7.3 0.00025 34.5 6.0 83 109-211 132-218 (255)
24 1ne2_A Hypothetical protein TA 68.3 4.3 0.00015 34.6 4.0 65 123-206 98-162 (200)
25 2ipx_A RRNA 2'-O-methyltransfe 67.9 4.2 0.00014 35.8 3.9 75 124-212 130-214 (233)
26 3cgg_A SAM-dependent methyltra 66.4 11 0.00037 31.1 6.0 77 123-212 92-172 (195)
27 3tm4_A TRNA (guanine N2-)-meth 65.9 16 0.00054 35.1 7.9 93 106-212 252-349 (373)
28 2yxd_A Probable cobalt-precorr 65.9 9.2 0.00031 31.3 5.4 78 113-211 75-153 (183)
29 1ej0_A FTSJ; methyltransferase 64.7 17 0.00057 29.2 6.7 78 124-204 66-151 (180)
30 3v97_A Ribosomal RNA large sub 64.1 2.3 8E-05 45.1 1.7 95 112-210 579-677 (703)
31 2ozv_A Hypothetical protein AT 63.5 38 0.0013 30.5 9.6 90 124-217 94-195 (260)
32 3bwc_A Spermidine synthase; SA 63.4 6 0.00021 37.0 4.2 80 124-211 153-236 (304)
33 1yzh_A TRNA (guanine-N(7)-)-me 62.9 31 0.0011 29.6 8.6 79 124-210 95-177 (214)
34 2yvl_A TRMI protein, hypotheti 61.5 66 0.0022 27.8 10.5 70 124-213 144-213 (248)
35 2qm3_A Predicted methyltransfe 61.4 28 0.00097 33.2 8.7 87 112-212 212-306 (373)
36 2xyq_A Putative 2'-O-methyl tr 58.4 16 0.00055 34.5 6.2 81 123-212 108-194 (290)
37 2yx1_A Hypothetical protein MJ 58.3 18 0.00061 34.2 6.6 76 112-209 233-311 (336)
38 1ws6_A Methyltransferase; stru 57.8 7.4 0.00025 31.7 3.4 59 122-192 90-150 (171)
39 2fhp_A Methylase, putative; al 56.9 4.3 0.00015 33.7 1.8 57 124-191 98-156 (187)
40 2kw5_A SLR1183 protein; struct 56.7 60 0.0021 27.1 9.1 25 121-147 77-101 (202)
41 3dmg_A Probable ribosomal RNA 56.3 18 0.00062 35.2 6.4 71 110-191 270-342 (381)
42 2qy6_A UPF0209 protein YFCK; s 55.1 16 0.00054 33.8 5.5 58 140-210 173-230 (257)
43 3r24_A NSP16, 2'-O-methyl tran 54.9 32 0.0011 33.6 7.6 115 121-262 153-273 (344)
44 2oyr_A UPF0341 protein YHIQ; a 53.6 4.3 0.00015 37.8 1.3 28 124-152 149-176 (258)
45 3a27_A TYW2, uncharacterized p 52.8 33 0.0011 31.3 7.2 49 124-191 173-221 (272)
46 3hm2_A Precorrin-6Y C5,15-meth 52.8 64 0.0022 26.1 8.5 82 113-211 67-149 (178)
47 1i9g_A Hypothetical protein RV 52.8 9.7 0.00033 34.1 3.5 69 124-211 157-226 (280)
48 2h00_A Methyltransferase 10 do 51.6 20 0.00068 31.7 5.4 41 112-152 106-152 (254)
49 1uwv_A 23S rRNA (uracil-5-)-me 51.2 47 0.0016 32.5 8.5 81 114-211 327-410 (433)
50 3dh0_A SAM dependent methyltra 50.3 63 0.0022 27.3 8.3 86 113-212 80-178 (219)
51 3c0k_A UPF0064 protein YCCW; P 48.6 16 0.00054 35.3 4.5 83 123-209 274-364 (396)
52 2qfm_A Spermine synthase; sper 48.5 9 0.00031 37.8 2.7 60 138-203 265-327 (364)
53 3ldg_A Putative uncharacterize 48.0 18 0.00061 35.4 4.8 44 106-152 267-312 (384)
54 1iy9_A Spermidine synthase; ro 47.6 24 0.00082 32.4 5.4 59 124-191 133-191 (275)
55 3kkz_A Uncharacterized protein 47.4 1.2E+02 0.0041 26.6 9.9 90 108-212 82-193 (267)
56 1xdz_A Methyltransferase GIDB; 47.1 69 0.0023 28.0 8.2 86 114-215 113-202 (240)
57 3h2b_A SAM-dependent methyltra 47.0 36 0.0012 28.5 6.1 78 123-212 87-179 (203)
58 3gdh_A Trimethylguanosine synt 45.3 12 0.00041 32.7 2.9 38 112-152 117-156 (241)
59 2jjq_A Uncharacterized RNA met 43.0 36 0.0012 33.6 6.2 53 120-191 337-389 (425)
60 2p8j_A S-adenosylmethionine-de 42.5 81 0.0028 26.3 7.7 26 121-148 72-97 (209)
61 3k0b_A Predicted N6-adenine-sp 41.9 25 0.00086 34.3 4.8 26 124-152 294-319 (393)
62 2ift_A Putative methylase HI07 41.8 19 0.00065 31.0 3.6 57 124-191 108-165 (201)
63 2esr_A Methyltransferase; stru 41.8 13 0.00045 30.7 2.4 69 112-192 71-141 (177)
64 3ll7_A Putative methyltransfer 41.2 5 0.00017 40.0 -0.4 29 123-152 146-175 (410)
65 3lcc_A Putative methyl chlorid 40.7 43 0.0015 28.9 5.7 73 124-211 119-203 (235)
66 2igt_A SAM dependent methyltra 39.5 14 0.00047 35.3 2.4 92 123-217 206-306 (332)
67 3dlc_A Putative S-adenosyl-L-m 39.5 88 0.003 26.0 7.4 63 112-188 83-147 (219)
68 3g89_A Ribosomal RNA small sub 37.4 67 0.0023 28.8 6.6 88 112-215 121-212 (249)
69 3dtn_A Putative methyltransfer 36.5 87 0.003 26.7 7.0 49 124-187 96-146 (234)
70 2fpo_A Methylase YHHF; structu 35.7 24 0.00084 30.3 3.3 56 124-191 107-162 (202)
71 3ldu_A Putative methylase; str 35.6 16 0.00055 35.6 2.3 26 124-152 288-313 (385)
72 3adn_A Spermidine synthase; am 35.0 20 0.00068 33.6 2.7 59 124-191 142-200 (294)
73 4dmg_A Putative uncharacterize 34.8 21 0.00071 35.0 2.9 38 113-151 254-291 (393)
74 2fca_A TRNA (guanine-N(7)-)-me 34.7 87 0.003 27.0 6.8 83 123-211 91-175 (213)
75 1g55_A DNA cytosine methyltran 34.6 32 0.0011 32.8 4.1 111 124-249 51-170 (343)
76 3e05_A Precorrin-6Y C5,15-meth 34.5 2E+02 0.0069 23.9 10.6 67 124-207 94-160 (204)
77 3njr_A Precorrin-6Y methylase; 34.3 1E+02 0.0036 26.3 7.2 80 113-211 95-176 (204)
78 2ih2_A Modification methylase 33.5 18 0.00061 34.5 2.2 26 124-152 85-110 (421)
79 3hnr_A Probable methyltransfer 33.4 92 0.0032 26.2 6.6 51 123-188 92-144 (220)
80 2zfu_A Nucleomethylin, cerebra 33.2 50 0.0017 28.0 4.8 74 123-211 100-175 (215)
81 3g2m_A PCZA361.24; SAM-depende 32.5 96 0.0033 27.9 6.9 21 123-146 136-156 (299)
82 3m70_A Tellurite resistance pr 32.3 40 0.0014 30.1 4.3 34 115-151 162-195 (286)
83 2b9e_A NOL1/NOP2/SUN domain fa 32.0 40 0.0014 31.8 4.3 39 113-151 145-185 (309)
84 3dou_A Ribosomal RNA large sub 32.0 88 0.003 26.7 6.3 27 124-150 66-101 (191)
85 1y8c_A S-adenosylmethionine-de 31.7 1.4E+02 0.0048 25.3 7.6 25 121-148 85-109 (246)
86 1o9g_A RRNA methyltransferase; 31.2 20 0.00067 31.8 1.9 67 120-192 144-216 (250)
87 3ntv_A MW1564 protein; rossman 30.7 60 0.002 28.4 5.0 60 112-187 112-174 (232)
88 1ri5_A MRNA capping enzyme; me 30.3 45 0.0015 29.6 4.2 25 123-148 117-141 (298)
89 3sm3_A SAM-dependent methyltra 30.3 1.2E+02 0.0042 25.4 6.9 26 124-151 87-112 (235)
90 2plw_A Ribosomal RNA methyltra 30.1 1E+02 0.0035 25.6 6.2 13 139-151 105-117 (201)
91 1wxx_A TT1595, hypothetical pr 29.8 22 0.00076 34.1 2.2 29 123-151 260-290 (382)
92 3o4f_A Spermidine synthase; am 28.7 41 0.0014 32.0 3.8 58 125-191 143-200 (294)
93 1inl_A Spermidine synthase; be 28.2 29 0.00099 32.2 2.6 59 124-191 148-207 (296)
94 2nxc_A L11 mtase, ribosomal pr 27.7 59 0.002 29.1 4.5 59 138-211 182-240 (254)
95 1vl5_A Unknown conserved prote 27.3 2.3E+02 0.0079 24.5 8.3 33 113-147 77-110 (260)
96 2b25_A Hypothetical protein; s 27.0 1E+02 0.0034 28.5 6.1 68 124-208 171-240 (336)
97 1jsx_A Glucose-inhibited divis 26.9 2.1E+02 0.007 23.8 7.7 69 123-213 118-186 (207)
98 2ex4_A Adrenal gland protein A 25.9 91 0.0031 26.9 5.3 76 124-213 132-223 (241)
99 1xxl_A YCGJ protein; structura 25.7 2.1E+02 0.0072 24.6 7.7 22 124-147 73-94 (239)
100 1sqg_A SUN protein, FMU protei 25.6 39 0.0013 32.9 3.1 37 115-151 290-326 (429)
101 2r6z_A UPF0341 protein in RSP 25.5 26 0.0009 32.1 1.7 29 124-152 143-173 (258)
102 3cc8_A Putative methyltransfer 25.5 1.4E+02 0.0048 24.9 6.3 26 123-148 76-101 (230)
103 3jwg_A HEN1, methyltransferase 25.3 79 0.0027 26.8 4.7 22 124-147 88-109 (219)
104 2pt6_A Spermidine synthase; tr 25.2 27 0.00091 33.0 1.7 60 124-192 174-233 (321)
105 3vc1_A Geranyl diphosphate 2-C 25.1 1.9E+02 0.0066 26.1 7.7 87 113-214 158-268 (312)
106 3eey_A Putative rRNA methylase 25.1 50 0.0017 27.5 3.3 26 124-150 78-103 (197)
107 3ocj_A Putative exported prote 24.8 92 0.0032 28.2 5.4 26 123-151 173-198 (305)
108 2as0_A Hypothetical protein PH 24.8 16 0.00056 35.1 0.2 29 123-151 270-300 (396)
109 3id6_C Fibrillarin-like rRNA/T 24.6 1.2E+02 0.0043 27.2 6.1 76 124-213 129-214 (232)
110 2a14_A Indolethylamine N-methy 24.6 96 0.0033 27.6 5.3 83 124-216 138-239 (263)
111 2okc_A Type I restriction enzy 24.5 76 0.0026 31.0 5.0 29 122-153 238-266 (445)
112 1vlm_A SAM-dependent methyltra 24.4 94 0.0032 26.5 5.1 77 122-212 86-185 (219)
113 2yxl_A PH0851 protein, 450AA l 24.3 66 0.0023 31.6 4.5 38 113-151 302-341 (450)
114 3bt7_A TRNA (uracil-5-)-methyl 24.3 42 0.0014 32.0 3.0 12 140-151 295-306 (369)
115 3jwh_A HEN1; methyltransferase 24.1 89 0.003 26.5 4.8 22 124-147 88-109 (217)
116 2xvm_A Tellurite resistance pr 24.0 81 0.0028 25.9 4.4 25 123-150 83-107 (199)
117 1nv8_A HEMK protein; class I a 23.9 82 0.0028 28.9 4.8 91 107-204 158-263 (284)
118 2h1r_A Dimethyladenosine trans 23.3 67 0.0023 29.7 4.1 24 124-151 94-117 (299)
119 3v97_A Ribosomal RNA large sub 23.1 57 0.002 34.4 4.0 21 283-303 529-549 (703)
120 1ve3_A Hypothetical protein PH 23.1 1.1E+02 0.0036 25.8 5.1 57 123-191 88-144 (227)
121 3ubt_Y Modification methylase 22.9 1.6E+02 0.0056 26.9 6.7 114 118-249 40-164 (331)
122 3l8d_A Methyltransferase; stru 22.9 1.2E+02 0.004 25.9 5.4 76 124-213 102-198 (242)
123 2b78_A Hypothetical protein SM 22.8 31 0.0011 33.3 1.7 82 123-208 266-355 (385)
124 3f4k_A Putative methyltransfer 22.7 3.5E+02 0.012 23.0 8.6 85 112-211 86-192 (257)
125 4hg2_A Methyltransferase type 22.3 1.1E+02 0.0038 27.6 5.3 53 124-191 85-137 (257)
126 3mgg_A Methyltransferase; NYSG 21.9 3.2E+02 0.011 23.7 8.3 24 124-149 91-114 (276)
127 2frx_A Hypothetical protein YE 21.8 57 0.0019 32.8 3.5 38 113-151 160-198 (479)
128 3m6w_A RRNA methylase; rRNA me 21.5 38 0.0013 34.1 2.1 39 112-151 143-181 (464)
129 3gjy_A Spermidine synthase; AP 21.4 53 0.0018 31.4 3.0 60 124-192 143-203 (317)
130 3vyw_A MNMC2; tRNA wobble urid 21.4 1.2E+02 0.0043 28.9 5.6 64 134-210 179-243 (308)
131 3g5l_A Putative S-adenosylmeth 21.3 70 0.0024 27.8 3.6 23 124-148 94-116 (253)
132 3ufb_A Type I restriction-modi 21.2 73 0.0025 32.4 4.2 14 139-152 301-314 (530)
133 3u81_A Catechol O-methyltransf 20.7 88 0.003 26.8 4.1 79 112-204 100-185 (221)
134 3dli_A Methyltransferase; PSI- 20.7 1E+02 0.0034 26.7 4.5 81 123-215 84-184 (240)
135 3ujc_A Phosphoethanolamine N-m 20.1 1.1E+02 0.0039 26.3 4.8 74 124-211 106-202 (266)
No 1
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=98.23 E-value=2.1e-06 Score=80.07 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=65.3
Q ss_pred CcccEEEECCCCcccccccccccCCCC-CH--------HHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEE
Q psy2298 139 VKFDVIHIEPPLEEYQRTLGVTNMQGW-SW--------DQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRR 209 (366)
Q Consensus 139 ~kFDVIliDPPW~~~s~~~G~~~Y~tm-s~--------~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ 209 (366)
.+||+|++|||+.... ..|..+ +. +-|.. +..++.++|.+|+++... .......++..+||.+
T Consensus 22 ~~vdlI~~DPPY~~~~-----~~~d~~~~~~~y~~~~~~~l~~--~~~~Lk~~g~i~v~~~d~-~~~~~~~~~~~~gf~~ 93 (260)
T 1g60_A 22 KSVQLAVIDPPYNLSK-----ADWDSFDSHNEFLAFTYRWIDK--VLDKLDKDGSLYIFNTPF-NCAFICQYLVSKGMIF 93 (260)
T ss_dssp TCEEEEEECCCCSSCS-----SGGGCCSSHHHHHHHHHHHHHH--HHHHEEEEEEEEEEECHH-HHHHHHHHHHHTTCEE
T ss_pred cccCEEEECCCCCCCc-----ccccccCCHHHHHHHHHHHHHH--HHHHhcCCeEEEEEcCcH-HHHHHHHHHHhhccce
Confidence 5899999999996421 113322 11 11222 346778999999997542 2334455788899999
Q ss_pred EeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCC
Q psy2298 210 CEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGT 249 (366)
Q Consensus 210 ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~ 249 (366)
..+++|.|.+..+. ....+...+|.||++.|+.
T Consensus 94 ~~~iiW~K~~~~~~-------~~~~~~~~hE~Il~~~K~~ 126 (260)
T 1g60_A 94 QNWITWDKRDGMGS-------AKRRFSTGQETILFFSKSK 126 (260)
T ss_dssp EEEEEECCCCSCCC-------CSSSCBCCCEEEEEEESST
T ss_pred eEEEEEEecCCCcc-------ccCccccCCcEEEEEEeCC
Confidence 99999999764321 1234788999999999874
No 2
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=98.12 E-value=9.5e-06 Score=78.35 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=69.2
Q ss_pred CCcccEEEECCCCcccccccccccCCCCCHHHHHc-----C-ChhhhccCCeEEEEecCCC--c--------chHHHHHH
Q psy2298 138 NVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQ-----L-EIGEVAAARSFVFLWCGSS--E--------GLDQGRNC 201 (366)
Q Consensus 138 ~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~-----L-PI~~L~a~~g~lFlWvTn~--~--------~L~~~~el 201 (366)
...||+|++|||+.... ...|..++.++... | .+.+++.++|.+|+++.+. . .+....++
T Consensus 31 ~~svDlI~tDPPY~~~~----~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~ 106 (323)
T 1boo_A 31 EESISLVMTSPPFALQR----KKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRM 106 (323)
T ss_dssp SSCEEEEEECCCCSSSC----SCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEECCHHHHHHHHH
T ss_pred CCCeeEEEECCCCCCCc----ccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcccccchHHHHHHH
Confidence 46899999999996421 11343332222111 0 2357788999999999874 1 13455567
Q ss_pred HHhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCC
Q psy2298 202 LRKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGT 249 (366)
Q Consensus 202 l~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~ 249 (366)
++..||.+..+++|.|.+..+............++..+|.||+..|+.
T Consensus 107 ~~~~Gf~~~~~iiW~k~~~~~~~~~~~~~~~~~~~~~hE~Il~~~K~~ 154 (323)
T 1boo_A 107 IDEVGFFLAEDFYWFNPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTE 154 (323)
T ss_dssp HHTTCCEEEEEEEEECSSCTTSCTCCCCCTCCSCCCCEEEEEEEESSS
T ss_pred HHhCCCEEEEEEEEecCCCCCCchhhhhhhccccCCCCceEEEEecCC
Confidence 889999999999999976422100000011335788999999999875
No 3
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=98.03 E-value=7.9e-06 Score=79.25 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=72.1
Q ss_pred ccCCcccccccc-CCcccEEEECCCCcccccccc-cccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcc-------hH
Q psy2298 126 KCDVKEFNLKEL-NVKFDVIHIEPPLEEYQRTLG-VTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEG-------LD 196 (366)
Q Consensus 126 ~~Dl~~~~l~~l-~~kFDVIliDPPW~~~s~~~G-~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~-------L~ 196 (366)
+.|...+ +..+ ...||+|++|||+......-. ...|-.|..+.|.. +.+++.++|.+|+|+..... |.
T Consensus 44 ~gD~l~~-L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~--~~rvLk~~G~i~i~~~~~~~~~~~~~~l~ 120 (319)
T 1eg2_A 44 VCDCLDT-LAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE--AERVLSPTGSIAIFGGLQYQGEAGSGDLI 120 (319)
T ss_dssp ECCHHHH-HHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH--HHHHEEEEEEEEEEECSCCCCCTTBCCHH
T ss_pred CCcHHHH-HHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHH--HHHHcCCCeEEEEEcCcccccccccccHH
Confidence 5664432 2233 358999999999964311000 01111122222332 35778899999999986421 25
Q ss_pred HHHHHHHhcC-cEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCC
Q psy2298 197 QGRNCLRKWG-FRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGT 249 (366)
Q Consensus 197 ~~~ell~~WG-Fr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~ 249 (366)
....++...| |.++..++|.|.+ ++. ....++..+|.||++.|+.
T Consensus 121 ~l~~~i~~~G~~~~~~~IIW~K~~--~~~------~~~~~~~~hE~ILvf~K~~ 166 (319)
T 1eg2_A 121 SIISHMRQNSKMLLANLIIWNYPN--GMS------AQRFFANRHEEIAWFAKTK 166 (319)
T ss_dssp HHHHHHHHHCCCEEEEEEEEECSC--CCC------CSSSCCCCEEEEEEEESST
T ss_pred HHHHHHhCcccceeEEEEEEECCC--Ccc------ccCeecCCCcEEEEEEeCc
Confidence 5556677789 9999999999976 221 2245788999999999975
No 4
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=97.86 E-value=3e-05 Score=73.63 Aligned_cols=214 Identities=20% Similarity=0.269 Sum_probs=104.1
Q ss_pred ChhhHHHHHhHHHHHHhhCCCCCccccCCcccccccc-CCcccEEEECCCCccccc---cccc----ccCCCCC--HHHH
Q psy2298 101 YPKLRELIKLKDDLIAETATPPMFLKCDVKEFNLKEL-NVKFDVIHIEPPLEEYQR---TLGV----TNMQGWS--WDQI 170 (366)
Q Consensus 101 ypkl~~l~~lk~~~i~~~a~pp~~i~~Dl~~~~l~~l-~~kFDVIliDPPW~~~s~---~~G~----~~Y~tms--~~eI 170 (366)
+|+.++-.+.-+..+... -.+++.|...+ +..+ ...||+|+.|||+..... ..+. ..|..+. +.++
T Consensus 4 ~~~~~~~~~~gd~~~~~~---~~i~~gD~~~~-l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~ 79 (297)
T 2zig_A 4 FPKAKEAFSEGEKVSFGV---HRLHVGDAREV-LASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRV 79 (297)
T ss_dssp -----------------C---EEEEESCHHHH-HTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHH
T ss_pred chhHHhhhCccccccccC---CEEEECcHHHH-HhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHH
Confidence 455555555544433221 12567776553 2233 368999999999963211 0000 0111010 1122
Q ss_pred HcCChhhhccCCeEEEEecCCCc--------c----h-HHHHHHHHhcCcEEEeeEEEEEeCCCCC---CC----ccccc
Q psy2298 171 MQLEIGEVAAARSFVFLWCGSSE--------G----L-DQGRNCLRKWGFRRCEDICWIRTNASNP---GH----SKNIE 230 (366)
Q Consensus 171 ~~LPI~~L~a~~g~lFlWvTn~~--------~----L-~~~~ell~~WGFr~ve~~vWvK~t~~g~---~~----~~~~~ 230 (366)
.. .+..++.++|.++|++.... + + ....++|...||.+...++|.|.+.... +. .....
T Consensus 80 ~~-~~~rvLk~~G~l~i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW~K~~~~~~~~~~~~~~~~~~~~ 158 (297)
T 2zig_A 80 WR-EVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIWHKHTNASLEVEGRGVFLGKPYE 158 (297)
T ss_dssp HH-HHHHHEEEEEEEEEEECCEEEECC----EEEECHHHHHHHHHHHTTCEEEEEEEEECC----------------CCC
T ss_pred HH-HHHHHcCCCcEEEEEECCCccccccCCcccccccHHHHHHHHHHcCCeeeccEEEeCCCCccccccccccccCCCCC
Confidence 22 35677789999999998531 0 1 3445688899999999999999752210 00 00112
Q ss_pred cccccccCeeEEEEEEeCCCcCC-CCCCcccccc--------cccEEE--EecccCCC-CCCChHHH-HHHHHhC-CCCc
Q psy2298 231 AKAVFQRTKEHCLMGIKGTVRRS-TDGDFIHANV--------DIDLII--SEEMEYGS-LEKPVEIF-HIMEHFC-LGRR 296 (366)
Q Consensus 231 ~g~~~r~~~E~cLmG~rG~vrrs-td~~~ih~nv--------d~dvIi--~~~p~~~H-SrKP~eiy-~lIE~~~-p~~r 296 (366)
++.++++.+|.||++.|+...+. .........+ -.+|.. .......| ..||.++. .+|+.+. ++..
T Consensus 159 ~~~~~~~~~E~il~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~h~~~~p~~l~~~~i~~~~~~~~~ 238 (297)
T 2zig_A 159 PGAIIKTEIEYILMQRKPGGYRKPTQEQREKSRLPKEDFHRFFRQIWDDIPGESTKDHPAPFPLELAERLVRMFSFVGDV 238 (297)
T ss_dssp TTCCCCCCEEEEEEEECCSCCCCCCHHHHHHHCCCHHHHHHHSSSEECSCC--------CCSCHHHHHHHHHHHCCTTCE
T ss_pred CcceeccCcceeEEeeccCCCCCcchhhccccccchhhhhhccCCeeecCCCccccCCCCCCCHHHHHHHHHHhCCCCCE
Confidence 34567889999999998642211 1000000000 012321 00011224 45898764 5566664 4668
Q ss_pred eEEEecCCC-----CCCCCceEEcCCCC
Q psy2298 297 RLHIFGRDS-----TIRPGWLTIGPDLT 319 (366)
Q Consensus 297 rLELFAR~~-----~lRpGW~swGnEv~ 319 (366)
.|++|+-.. ..+-|...+|-|+.
T Consensus 239 vlD~f~GsGt~~~~a~~~g~~~~g~e~~ 266 (297)
T 2zig_A 239 VLDPFAGTGTTLIAAARWGRRALGVELV 266 (297)
T ss_dssp EEETTCTTTHHHHHHHHTTCEEEEEESC
T ss_pred EEECCCCCCHHHHHHHHcCCeEEEEeCC
Confidence 999997521 13567788888876
No 5
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=90.01 E-value=0.75 Score=41.64 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=57.1
Q ss_pred HHHhHHHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCccccc---c-----cc-cccCCCCCHHHHHcCCh
Q psy2298 107 LIKLKDDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQR---T-----LG-VTNMQGWSWDQIMQLEI 175 (366)
Q Consensus 107 l~~lk~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~---~-----~G-~~~Y~tms~~eI~~LPI 175 (366)
.+++=.+.+....... .++++|+..+.-..-..+||+|++|||+..... . +. ..+....+++++.+ -+
T Consensus 84 ~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~-~~ 162 (259)
T 3lpm_A 84 LADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIR-VA 162 (259)
T ss_dssp HHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHH-HH
T ss_pred HHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHH-HH
Confidence 3333344455544443 378888877642111469999999999854310 0 00 01111112223322 23
Q ss_pred hhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEeeEEEEE
Q psy2298 176 GEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWIR 217 (366)
Q Consensus 176 ~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~~vWvK 217 (366)
..++.++|.+++-+.. ..+....+.+.+.||..+. +..+.
T Consensus 163 ~~~LkpgG~l~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~v~ 202 (259)
T 3lpm_A 163 ASLLKQGGKANFVHRP-ERLLDIIDIMRKYRLEPKR-IQFVH 202 (259)
T ss_dssp HHHEEEEEEEEEEECT-TTHHHHHHHHHHTTEEEEE-EEEEE
T ss_pred HHHccCCcEEEEEEcH-HHHHHHHHHHHHCCCceEE-EEEee
Confidence 4566688877774443 3577777889999997653 34444
No 6
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=87.30 E-value=1.5 Score=38.22 Aligned_cols=96 Identities=16% Similarity=0.078 Sum_probs=51.3
Q ss_pred HHHHHhhCCCCCccccCCcccc-ccccCCcccEEEECCCCccccccc--------ccccCCCCCHHHHHcCChhhhccCC
Q psy2298 112 DDLIAETATPPMFLKCDVKEFN-LKELNVKFDVIHIEPPLEEYQRTL--------GVTNMQGWSWDQIMQLEIGEVAAAR 182 (366)
Q Consensus 112 ~~~i~~~a~pp~~i~~Dl~~~~-l~~l~~kFDVIliDPPW~~~s~~~--------G~~~Y~tms~~eI~~LPI~~L~a~~ 182 (366)
.+.+......-.++.+|+..+. +. ..+||+|++|||+....... .......-.+..+.+ -+.+++.++
T Consensus 96 ~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~Lkpg 172 (230)
T 3evz_A 96 RRNIERNNSNVRLVKSNGGIIKGVV--EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLE-EAFDHLNPG 172 (230)
T ss_dssp HHHHHHTTCCCEEEECSSCSSTTTC--CSCEEEEEECCCCC---------------CCSSSCHHHHHHHH-HHGGGEEEE
T ss_pred HHHHHHhCCCcEEEeCCchhhhhcc--cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHH-HHHHHhCCC
Confidence 3444444444457888865442 22 36899999999986422100 000000000122221 234566789
Q ss_pred eEEEEecCCC-cchHHHHHHHHhcCcEEE
Q psy2298 183 SFVFLWCGSS-EGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 183 g~lFlWvTn~-~~L~~~~ell~~WGFr~v 210 (366)
|.+++.+... ...+...++++.-||...
T Consensus 173 G~l~~~~~~~~~~~~~~~~~l~~~g~~~~ 201 (230)
T 3evz_A 173 GKVALYLPDKEKLLNVIKERGIKLGYSVK 201 (230)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEEEecccHhHHHHHHHHHHHcCCceE
Confidence 9888876543 234566778899999554
No 7
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=87.08 E-value=1.2 Score=37.71 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=45.2
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccc---cccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHH
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRT---LGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGR 199 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~---~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ 199 (366)
.++++|+... +. ...||+|+++||+...... .+.... .-.+.++.+ .+ ++|.+++-+......+...
T Consensus 64 ~~~~~d~~~~-~~--~~~fD~i~~n~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~l--pgG~l~~~~~~~~~~~~l~ 133 (170)
T 3q87_B 64 NLVRADLLCS-IN--QESVDVVVFNPPYVPDTDDPIIGGGYLG-REVIDRFVD----AV--TVGMLYLLVIEANRPKEVL 133 (170)
T ss_dssp CEEECSTTTT-BC--GGGCSEEEECCCCBTTCCCTTTBCCGGG-CHHHHHHHH----HC--CSSEEEEEEEGGGCHHHHH
T ss_pred eEEECChhhh-cc--cCCCCEEEECCCCccCCccccccCCcch-HHHHHHHHh----hC--CCCEEEEEEecCCCHHHHH
Confidence 3778887652 22 2699999999998642211 000000 001122221 12 7888777654433456777
Q ss_pred HHHHhcCcEEEe
Q psy2298 200 NCLRKWGFRRCE 211 (366)
Q Consensus 200 ell~~WGFr~ve 211 (366)
++|+.-||+.++
T Consensus 134 ~~l~~~gf~~~~ 145 (170)
T 3q87_B 134 ARLEERGYGTRI 145 (170)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCcEEE
Confidence 899999997654
No 8
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=81.16 E-value=2.9 Score=35.38 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=44.8
Q ss_pred ccccCCccccccc---cCCcccEEEECCCCcccccccc----cccC----------CCCC-HHHHHcCChhhhccCCeE-
Q psy2298 124 FLKCDVKEFNLKE---LNVKFDVIHIEPPLEEYQRTLG----VTNM----------QGWS-WDQIMQLEIGEVAAARSF- 184 (366)
Q Consensus 124 ~i~~Dl~~~~l~~---l~~kFDVIliDPPW~~~s~~~G----~~~Y----------~tms-~~eI~~LPI~~L~a~~g~- 184 (366)
++.+|+.. .+.. ...+||+|++|||+........ ...| ..+. +..+.+ -+.+++.++|.
T Consensus 83 ~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l 160 (215)
T 4dzr_A 83 WAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAA-LPPYVLARGRAG 160 (215)
T ss_dssp CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHT-CCGGGBCSSSEE
T ss_pred EEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHH-HHHHHhcCCCeE
Confidence 55666554 2222 2369999999999854221000 0000 0000 123322 24566778998
Q ss_pred EEEecCCCcchHHHHHHHH--hcCcEEEe
Q psy2298 185 VFLWCGSSEGLDQGRNCLR--KWGFRRCE 211 (366)
Q Consensus 185 lFlWvTn~~~L~~~~ell~--~WGFr~ve 211 (366)
+++=+.. ...+...+++. .-||..++
T Consensus 161 ~~~~~~~-~~~~~~~~~l~~~~~gf~~~~ 188 (215)
T 4dzr_A 161 VFLEVGH-NQADEVARLFAPWRERGFRVR 188 (215)
T ss_dssp EEEECTT-SCHHHHHHHTGGGGGGTEECC
T ss_pred EEEEECC-ccHHHHHHHHHHhhcCCceEE
Confidence 6655554 34667778899 66776554
No 9
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=79.55 E-value=0.76 Score=43.97 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=27.3
Q ss_pred CcccEEEECCCCcccccccccccCCCCCHHH-HHcCChhhhccCCeEEEEecCC
Q psy2298 139 VKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQ-IMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 139 ~kFDVIliDPPW~~~s~~~G~~~Y~tms~~e-I~~LPI~~L~a~~g~lFlWvTn 191 (366)
.+||+|+||||.+... .++. +..|-=..+..+.|++.||-.-
T Consensus 158 ~~fdLVfiDPPYe~k~-----------~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 158 EKRGLIFIDPSYERKE-----------EYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp TSCEEEEECCCCCSTT-----------HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCccEEEECCCCCCCc-----------HHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 4799999999986311 1222 2233333445689999999875
No 10
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=78.97 E-value=12 Score=33.98 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=49.1
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
++.+|+... +. ...||+|++|+|=. .-.++++ .+++.++|.+++.+.+....+...+.|.
T Consensus 166 ~~~~d~~~~-~~--~~~fD~Vi~~~~~~------------~~~l~~~-----~~~LkpgG~l~i~~~~~~~~~~~~~~l~ 225 (275)
T 1yb2_A 166 TSRSDIADF-IS--DQMYDAVIADIPDP------------WNHVQKI-----ASMMKPGSVATFYLPNFDQSEKTVLSLS 225 (275)
T ss_dssp EECSCTTTC-CC--SCCEEEEEECCSCG------------GGSHHHH-----HHTEEEEEEEEEEESSHHHHHHHHHHSG
T ss_pred EEECchhcc-Cc--CCCccEEEEcCcCH------------HHHHHHH-----HHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 666776652 22 35899999987711 0122333 3445688998888876334455667788
Q ss_pred hcCcEEEeeEEEEEeC
Q psy2298 204 KWGFRRCEDICWIRTN 219 (366)
Q Consensus 204 ~WGFr~ve~~vWvK~t 219 (366)
.-||+.++.+.+....
T Consensus 226 ~~Gf~~~~~~~~~~~~ 241 (275)
T 1yb2_A 226 ASGMHHLETVELMKRR 241 (275)
T ss_dssp GGTEEEEEEEEEEECC
T ss_pred HCCCeEEEEEEEecce
Confidence 8999988877765543
No 11
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=78.88 E-value=5 Score=38.07 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=51.0
Q ss_pred HHHHhHHHHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCH----HHHHcCChhhhcc
Q psy2298 106 ELIKLKDDLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSW----DQIMQLEIGEVAA 180 (366)
Q Consensus 106 ~l~~lk~~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~----~eI~~LPI~~L~a 180 (366)
+.++.=.+.+...... -.|++.|+..+... ...||+|++||||-..... .... ..+.+ -+.+++.
T Consensus 239 ~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~--~~~~D~Ii~npPyg~r~~~-------~~~~~~~~~~~~~-~~~~~Lk 308 (354)
T 3tma_A 239 KRLGLAREAALASGLSWIRFLRADARHLPRF--FPEVDRILANPPHGLRLGR-------KEGLFHLYWDFLR-GALALLP 308 (354)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECCGGGGGGT--CCCCSEEEECCCSCC-----------CHHHHHHHHHHHH-HHHHTSC
T ss_pred HHHHHHHHHHHHcCCCceEEEeCChhhCccc--cCCCCEEEECCCCcCccCC-------cccHHHHHHHHHH-HHHHhcC
Confidence 3444444445555443 23777787766432 2469999999998532210 0011 11111 2345666
Q ss_pred CCeEEEEecCCCcchHHHHHHHHhcCcEEEe
Q psy2298 181 ARSFVFLWCGSSEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 181 ~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve 211 (366)
++|.+++.+.+ + +...++++ .||+...
T Consensus 309 pgG~l~i~t~~-~--~~~~~~~~-~g~~~~~ 335 (354)
T 3tma_A 309 PGGRVALLTLR-P--ALLKRALP-PGFALRH 335 (354)
T ss_dssp TTCEEEEEESC-H--HHHHHHCC-TTEEEEE
T ss_pred CCcEEEEEeCC-H--HHHHHHhh-cCcEEEE
Confidence 78988888776 2 44455666 8887653
No 12
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=78.56 E-value=3.3 Score=34.32 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=44.7
Q ss_pred HHHHHhhCCC---CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEe
Q psy2298 112 DDLIAETATP---PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLW 188 (366)
Q Consensus 112 ~~~i~~~a~p---p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlW 188 (366)
.+.+.....+ -.++.+|+.... . ...||+|+++||+..... ....+.+ -+.+++.++|.+++-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~~~~-~--~~~~D~v~~~~~~~~~~~----------~~~~~l~-~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 91 KENIKLNNLDNYDIRVVHSDLYENV-K--DRKYNKIITNPPIRAGKE----------VLHRIIE-EGKELLKDNGEIWVV 156 (194)
T ss_dssp HHHHHHTTCTTSCEEEEECSTTTTC-T--TSCEEEEEECCCSTTCHH----------HHHHHHH-HHHHHEEEEEEEEEE
T ss_pred HHHHHHcCCCccceEEEECchhccc-c--cCCceEEEECCCcccchh----------HHHHHHH-HHHHHcCCCCEEEEE
Confidence 3444444444 246777776532 1 468999999999752000 0111111 134566788988877
Q ss_pred cCCCcchHHHHHHHHhc
Q psy2298 189 CGSSEGLDQGRNCLRKW 205 (366)
Q Consensus 189 vTn~~~L~~~~ell~~W 205 (366)
+.+....+...+.|+..
T Consensus 157 ~~~~~~~~~~~~~l~~~ 173 (194)
T 1dus_A 157 IQTKQGAKSLAKYMKDV 173 (194)
T ss_dssp EESTHHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHH
Confidence 76643445455666654
No 13
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=76.77 E-value=4.7 Score=36.61 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=44.5
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
++..|+..+ +. ...||+|++|||-.. -.++.+ .+++.++|.+++-+.....+....+.|+
T Consensus 168 ~~~~d~~~~-~~--~~~~D~V~~~~~~~~------------~~l~~~-----~~~L~pgG~l~~~~~~~~~~~~~~~~l~ 227 (277)
T 1o54_A 168 IKVRDISEG-FD--EKDVDALFLDVPDPW------------NYIDKC-----WEALKGGGRFATVCPTTNQVQETLKKLQ 227 (277)
T ss_dssp EECCCGGGC-CS--CCSEEEEEECCSCGG------------GTHHHH-----HHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEECCHHHc-cc--CCccCEEEECCcCHH------------HHHHHH-----HHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 566666554 22 257999999987320 122333 3455688888887775334566677888
Q ss_pred hcCcEEEeeE
Q psy2298 204 KWGFRRCEDI 213 (366)
Q Consensus 204 ~WGFr~ve~~ 213 (366)
..||..++.+
T Consensus 228 ~~gf~~~~~~ 237 (277)
T 1o54_A 228 ELPFIRIEVW 237 (277)
T ss_dssp HSSEEEEEEE
T ss_pred HCCCceeEEE
Confidence 8999866543
No 14
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=76.57 E-value=8 Score=32.95 Aligned_cols=80 Identities=14% Similarity=0.005 Sum_probs=48.5
Q ss_pred HHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
+.+...... -.++.+|+..+ ...+||+|+++++.+. +..+.+ -+.+++.++|.+++-...
T Consensus 101 ~~~~~~~~~~v~~~~~d~~~~----~~~~fD~i~~~~~~~~--------------~~~~l~-~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 101 ENAALNGIYDIALQKTSLLAD----VDGKFDLIVANILAEI--------------LLDLIP-QLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp HHHHHTTCCCCEEEESSTTTT----CCSCEEEEEEESCHHH--------------HHHHGG-GSGGGEEEEEEEEEEEEE
T ss_pred HHHHHcCCCceEEEecccccc----CCCCceEEEECCcHHH--------------HHHHHH-HHHHhcCCCCEEEEEecC
Confidence 334444443 34677777553 2479999999987632 122221 233566788877773222
Q ss_pred CcchHHHHHHHHhcCcEEEe
Q psy2298 192 SEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 192 ~~~L~~~~ell~~WGFr~ve 211 (366)
....+...++|+..||+.++
T Consensus 162 ~~~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 162 YLQLPKIEQALAENSFQIDL 181 (205)
T ss_dssp GGGHHHHHHHHHHTTEEEEE
T ss_pred cccHHHHHHHHHHcCCceEE
Confidence 12456677899999998775
No 15
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=75.39 E-value=6.2 Score=32.56 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=42.1
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
++.+|+.. .+..+ ..||+|+++++.... ..-|.. +.+++.++|.+++-..+........++++
T Consensus 86 ~~~~d~~~-~~~~~-~~~D~v~~~~~~~~~-------------~~~l~~--~~~~l~~gG~l~~~~~~~~~~~~~~~~l~ 148 (192)
T 1l3i_A 86 LMEGDAPE-ALCKI-PDIDIAVVGGSGGEL-------------QEILRI--IKDKLKPGGRIIVTAILLETKFEAMECLR 148 (192)
T ss_dssp EEESCHHH-HHTTS-CCEEEEEESCCTTCH-------------HHHHHH--HHHTEEEEEEEEEEECBHHHHHHHHHHHH
T ss_pred EEecCHHH-hcccC-CCCCEEEECCchHHH-------------HHHHHH--HHHhcCCCcEEEEEecCcchHHHHHHHHH
Confidence 56666554 23322 389999998775310 111222 24556688888776655334566677899
Q ss_pred hcCcEEE
Q psy2298 204 KWGFRRC 210 (366)
Q Consensus 204 ~WGFr~v 210 (366)
+.||...
T Consensus 149 ~~g~~~~ 155 (192)
T 1l3i_A 149 DLGFDVN 155 (192)
T ss_dssp HTTCCCE
T ss_pred HCCCceE
Confidence 9999543
No 16
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=75.07 E-value=3 Score=35.40 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=37.8
Q ss_pred HHHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHH-HHHcCChhhhccCCeEEEEec
Q psy2298 112 DDLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWD-QIMQLEIGEVAAARSFVFLWC 189 (366)
Q Consensus 112 ~~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~-eI~~LPI~~L~a~~g~lFlWv 189 (366)
.+.+.....+ -.++++|+..+.......+||+|++|||+..... ..+ .|..+-=..++.++|.+++-.
T Consensus 84 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~----------~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 84 ARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSA----------DVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp HHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHH----------HHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred HHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchh----------hHHHHHHHHHhcCccCCCeEEEEEe
Confidence 3344444442 2377888776532112579999999999753100 111 122221123677889887755
Q ss_pred CC
Q psy2298 190 GS 191 (366)
Q Consensus 190 Tn 191 (366)
..
T Consensus 154 ~~ 155 (189)
T 3p9n_A 154 AT 155 (189)
T ss_dssp ET
T ss_pred cC
Confidence 44
No 17
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=74.56 E-value=3.9 Score=37.19 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=51.1
Q ss_pred HHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCccccc---ccccccC-CCCCH-------HHHHcC--Chhhh
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQR---TLGVTNM-QGWSW-------DQIMQL--EIGEV 178 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~---~~G~~~Y-~tms~-------~eI~~L--PI~~L 178 (366)
+.+..+..+ -.++.+|+... +. ..+||+|+++||+..... ..+..+| +...+ +.+..+ -+.++
T Consensus 151 ~n~~~~~~~~v~~~~~d~~~~-~~--~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~ 227 (276)
T 2b3t_A 151 RNAQHLAIKNIHILQSDWFSA-LA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA 227 (276)
T ss_dssp HHHHHHTCCSEEEECCSTTGG-GT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG
T ss_pred HHHHHcCCCceEEEEcchhhh-cc--cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 344444443 23677776543 11 458999999999863211 0011111 11111 111111 13455
Q ss_pred ccCCeEEEEecCCCcchHHHHHHHHhcCcEEE
Q psy2298 179 AAARSFVFLWCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 179 ~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~v 210 (366)
+.++|.+++-+... ..+...++|+.-||+.+
T Consensus 228 LkpgG~l~~~~~~~-~~~~~~~~l~~~Gf~~v 258 (276)
T 2b3t_A 228 LVSGGFLLLEHGWQ-QGEAVRQAFILAGYHDV 258 (276)
T ss_dssp EEEEEEEEEECCSS-CHHHHHHHHHHTTCTTC
T ss_pred cCCCCEEEEEECch-HHHHHHHHHHHCCCcEE
Confidence 66889888876653 45666778998899744
No 18
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=74.09 E-value=7.3 Score=33.21 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=38.3
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecC-CCcchHHHHHH
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCG-SSEGLDQGRNC 201 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvT-n~~~L~~~~el 201 (366)
.++.+|+..++ ..||+|++|||+..... + ....-|.. +.+++ |.+++=+. +....+...++
T Consensus 100 ~~~~~d~~~~~-----~~~D~v~~~~p~~~~~~--~------~~~~~l~~--~~~~l---~~~~~~~~~~~~~~~~~~~~ 161 (207)
T 1wy7_A 100 KVFIGDVSEFN-----SRVDIVIMNPPFGSQRK--H------ADRPFLLK--AFEIS---DVVYSIHLAKPEVRRFIEKF 161 (207)
T ss_dssp EEEESCGGGCC-----CCCSEEEECCCCSSSST--T------TTHHHHHH--HHHHC---SEEEEEEECCHHHHHHHHHH
T ss_pred EEEECchHHcC-----CCCCEEEEcCCCccccC--C------chHHHHHH--HHHhc---CcEEEEEeCCcCCHHHHHHH
Confidence 36667766543 48999999999864221 1 11122221 11222 44444442 32234556678
Q ss_pred HHhcCcEEE
Q psy2298 202 LRKWGFRRC 210 (366)
Q Consensus 202 l~~WGFr~v 210 (366)
+...||+..
T Consensus 162 l~~~g~~~~ 170 (207)
T 1wy7_A 162 SWEHGFVVT 170 (207)
T ss_dssp HHHTTEEEE
T ss_pred HHHCCCeEE
Confidence 888998754
No 19
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=72.96 E-value=13 Score=34.05 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=47.1
Q ss_pred HHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecC
Q psy2298 113 DLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCG 190 (366)
Q Consensus 113 ~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvT 190 (366)
+.+....... .|+++|+..+.. +.+||+|++|||.... -.++++ .+++.++|.+++-..
T Consensus 166 ~n~~~n~~~~~v~~~~~D~~~~~~---~~~fD~Vi~~~p~~~~-----------~~l~~~-----~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 166 ENIHLNKVEDRMSAYNMDNRDFPG---ENIADRILMGYVVRTH-----------EFIPKA-----LSIAKDGAIIHYHNT 226 (278)
T ss_dssp HHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEEECCCSSGG-----------GGHHHH-----HHHEEEEEEEEEEEE
T ss_pred HHHHHcCCCceEEEEECCHHHhcc---cCCccEEEECCchhHH-----------HHHHHH-----HHHCCCCeEEEEEEe
Confidence 3344444443 278888877754 5689999999994310 012222 235567786666443
Q ss_pred C------CcchHHHHHHHHhcCcEEE
Q psy2298 191 S------SEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 191 n------~~~L~~~~ell~~WGFr~v 210 (366)
. ...++...+.++.-||+..
T Consensus 227 ~~~~~~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 227 VPEKLMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp EEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred eccccccccHHHHHHHHHHHcCCeeE
Confidence 3 1234566778888898754
No 20
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=72.72 E-value=12 Score=35.03 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=47.4
Q ss_pred HHHhhCCCC-CccccCCccccccccCCcccEEEECCCCccccc-ccccccCCCCCHHHHHcC---------ChhhhccCC
Q psy2298 114 LIAETATPP-MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQR-TLGVTNMQGWSWDQIMQL---------EIGEVAAAR 182 (366)
Q Consensus 114 ~i~~~a~pp-~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~-~~G~~~Y~tms~~eI~~L---------PI~~L~a~~ 182 (366)
.++....+. .+++.|...+.. ....||+|++|||...... .+.......++.+++..+ -+.+++.++
T Consensus 162 ~~~~~g~~~v~~~~~D~~~~~~--~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG 239 (315)
T 1ixk_A 162 NLSRLGVLNVILFHSSSLHIGE--LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG 239 (315)
T ss_dssp HHHHHTCCSEEEESSCGGGGGG--GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHhCCCeEEEEECChhhccc--ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344444432 367778776643 3468999999999642110 000000011333333211 133455567
Q ss_pred eEEEE-ecCCCc--chHHHHHHHHhcCcEEEe
Q psy2298 183 SFVFL-WCGSSE--GLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 183 g~lFl-WvTn~~--~L~~~~ell~~WGFr~ve 211 (366)
|.+++ =|+-.+ .-+....++++-||+.+.
T Consensus 240 G~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~ 271 (315)
T 1ixk_A 240 GILVYSTCSLEPEENEFVIQWALDNFDVELLP 271 (315)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHSSEEEEC
T ss_pred CEEEEEeCCCChHHhHHHHHHHHhcCCCEEec
Confidence 75544 344321 123445678888988764
No 21
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=72.27 E-value=7.4 Score=34.25 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=45.8
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
++..|+..+.+. ...||+|++|+|=.. -.+.++ .+++.++|.+++.+.+...+....+.|+
T Consensus 152 ~~~~d~~~~~~~--~~~~D~v~~~~~~~~------------~~l~~~-----~~~L~~gG~l~~~~~~~~~~~~~~~~l~ 212 (258)
T 2pwy_A 152 FHLGKLEEAELE--EAAYDGVALDLMEPW------------KVLEKA-----ALALKPDRFLVAYLPNITQVLELVRAAE 212 (258)
T ss_dssp EEESCGGGCCCC--TTCEEEEEEESSCGG------------GGHHHH-----HHHEEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EEECchhhcCCC--CCCcCEEEECCcCHH------------HHHHHH-----HHhCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 667777665333 258999999876110 112222 3456688988888876434566667888
Q ss_pred hcCcEEEeeE
Q psy2298 204 KWGFRRCEDI 213 (366)
Q Consensus 204 ~WGFr~ve~~ 213 (366)
..||..++.+
T Consensus 213 ~~gf~~~~~~ 222 (258)
T 2pwy_A 213 AHPFRLERVL 222 (258)
T ss_dssp TTTEEEEEEE
T ss_pred HCCCceEEEE
Confidence 8999877644
No 22
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=70.10 E-value=24 Score=29.97 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=47.5
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEEecCCCc-------
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFLWCGSSE------- 193 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWvTn~~------- 193 (366)
.++.+|+..++ ....||+|++..... + +..+++..+ -+.+++.++|.+++=+....
T Consensus 88 ~~~~~d~~~~~---~~~~fD~v~~~~~l~----------~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 152 (211)
T 3e23_A 88 PVRTMLFHQLD---AIDAYDAVWAHACLL----------H--VPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKL 152 (211)
T ss_dssp CCEECCGGGCC---CCSCEEEEEECSCGG----------G--SCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTT
T ss_pred ceEEeeeccCC---CCCcEEEEEecCchh----------h--cCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccccc
Confidence 46777777665 457999999964332 1 222222211 24456667886665433211
Q ss_pred -------chHHHHHHHHhcC-cEEEeeEEEEE
Q psy2298 194 -------GLDQGRNCLRKWG-FRRCEDICWIR 217 (366)
Q Consensus 194 -------~L~~~~ell~~WG-Fr~ve~~vWvK 217 (366)
..+.-.++|+.=| |+.++....-.
T Consensus 153 ~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~ 184 (211)
T 3e23_A 153 ARYYNYPSEEWLRARYAEAGTWASVAVESSEG 184 (211)
T ss_dssp SCEECCCCHHHHHHHHHHHCCCSEEEEEEEEE
T ss_pred chhccCCCHHHHHHHHHhCCCcEEEEEEeccC
Confidence 2355667899999 99887655443
No 23
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=69.85 E-value=7.3 Score=34.46 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=51.6
Q ss_pred HhHHHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEE
Q psy2298 109 KLKDDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVF 186 (366)
Q Consensus 109 ~lk~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lF 186 (366)
+.=.+.++.+..+. .++..|+... +. ...||+|++|+|-.. -.++++ .+++.++|.++
T Consensus 132 ~~a~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~~D~v~~~~~~~~------------~~l~~~-----~~~L~~gG~l~ 191 (255)
T 3mb5_A 132 KLAWENIKWAGFDDRVTIKLKDIYEG-IE--EENVDHVILDLPQPE------------RVVEHA-----AKALKPGGFFV 191 (255)
T ss_dssp HHHHHHHHHHTCTTTEEEECSCGGGC-CC--CCSEEEEEECSSCGG------------GGHHHH-----HHHEEEEEEEE
T ss_pred HHHHHHHHHcCCCCceEEEECchhhc-cC--CCCcCEEEECCCCHH------------HHHHHH-----HHHcCCCCEEE
Confidence 33344455555554 3677777643 22 357999999988321 012223 34566899999
Q ss_pred EecCCCcchHHHHHHHHhcC--cEEEe
Q psy2298 187 LWCGSSEGLDQGRNCLRKWG--FRRCE 211 (366)
Q Consensus 187 lWvTn~~~L~~~~ell~~WG--Fr~ve 211 (366)
+.+.....++...+.|+.-| |.-++
T Consensus 192 ~~~~~~~~~~~~~~~l~~~g~~f~~~~ 218 (255)
T 3mb5_A 192 AYTPCSNQVMRLHEKLREFKDYFMKPR 218 (255)
T ss_dssp EEESSHHHHHHHHHHHHHTGGGBSCCE
T ss_pred EEECCHHHHHHHHHHHHHcCCCccccE
Confidence 98876444566777888888 86554
No 24
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=68.34 E-value=4.3 Score=34.65 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHH
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCL 202 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell 202 (366)
.++.+|+..++ ..||+|++||||..... | ....-|..+ -++. |.+++.+... ..+...+++
T Consensus 98 ~~~~~d~~~~~-----~~~D~v~~~~p~~~~~~--~------~~~~~l~~~--~~~~---g~~~~~~~~~-~~~~~~~~~ 158 (200)
T 1ne2_A 98 NFMVADVSEIS-----GKYDTWIMNPPFGSVVK--H------SDRAFIDKA--FETS---MWIYSIGNAK-ARDFLRREF 158 (200)
T ss_dssp EEEECCGGGCC-----CCEEEEEECCCC---------------CHHHHHHH--HHHE---EEEEEEEEGG-GHHHHHHHH
T ss_pred EEEECcHHHCC-----CCeeEEEECCCchhccC--c------hhHHHHHHH--HHhc---CcEEEEEcCc-hHHHHHHHH
Confidence 36777776643 58999999999964321 1 111112111 1122 7788888643 456666788
Q ss_pred HhcC
Q psy2298 203 RKWG 206 (366)
Q Consensus 203 ~~WG 206 (366)
...|
T Consensus 159 ~~~g 162 (200)
T 1ne2_A 159 SARG 162 (200)
T ss_dssp HHHE
T ss_pred HHCC
Confidence 8888
No 25
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=67.88 E-value=4.2 Score=35.76 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=43.2
Q ss_pred ccccCCcccc-ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCC-----cc---
Q psy2298 124 FLKCDVKEFN-LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSS-----EG--- 194 (366)
Q Consensus 124 ~i~~Dl~~~~-l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~-----~~--- 194 (366)
++.+|+.... +......||+|++|+|.. ......-.-+..++.++|.+++=+... ..
T Consensus 130 ~~~~d~~~~~~~~~~~~~~D~V~~~~~~~--------------~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 195 (233)
T 2ipx_A 130 PVIEDARHPHKYRMLIAMVDVIFADVAQP--------------DQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEA 195 (233)
T ss_dssp EECSCTTCGGGGGGGCCCEEEEEECCCCT--------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHH
T ss_pred EEEcccCChhhhcccCCcEEEEEEcCCCc--------------cHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHH
Confidence 6788887754 333456899999998821 111111112556677888777633221 00
Q ss_pred -hHHHHHHHHhcCcEEEee
Q psy2298 195 -LDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 195 -L~~~~ell~~WGFr~ve~ 212 (366)
+....++|++-||+.++.
T Consensus 196 ~~~~~~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 196 VFASEVKKMQQENMKPQEQ 214 (233)
T ss_dssp HHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHHHHHHHCCCceEEE
Confidence 222246777889987764
No 26
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=66.39 E-value=11 Score=31.07 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=46.7
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEEecCCCc--chHHH
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFLWCGSSE--GLDQG 198 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWvTn~~--~L~~~ 198 (366)
.++.+|+..+.+. ...||+|++.|+.-. + ++.+++..+ -+.+++.++|.+++-+.+.. ..+.-
T Consensus 92 ~~~~~d~~~~~~~--~~~~D~i~~~~~~~~---------~--~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~ 158 (195)
T 3cgg_A 92 RWVVGDLSVDQIS--ETDFDLIVSAGNVMG---------F--LAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDF 158 (195)
T ss_dssp EEEECCTTTSCCC--CCCEEEEEECCCCGG---------G--SCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHH
T ss_pred cEEEcccccCCCC--CCceeEEEECCcHHh---------h--cChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHH
Confidence 4677887776543 468999999865321 1 122221111 23456678888777655532 24566
Q ss_pred HHHHHhcCcEEEee
Q psy2298 199 RNCLRKWGFRRCED 212 (366)
Q Consensus 199 ~ell~~WGFr~ve~ 212 (366)
.++++.-||+.++.
T Consensus 159 ~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 159 LEVAERVGLELENA 172 (195)
T ss_dssp HHHHHHHTEEEEEE
T ss_pred HHHHHHcCCEEeee
Confidence 67888999987643
No 27
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=65.94 E-value=16 Score=35.14 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=47.8
Q ss_pred HHHHhHHHHHHhhCC--CCCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHH-HcC--Chhhhcc
Q psy2298 106 ELIKLKDDLIAETAT--PPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQI-MQL--EIGEVAA 180 (366)
Q Consensus 106 ~l~~lk~~~i~~~a~--pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI-~~L--PI~~L~a 180 (366)
+.++.=.+.+..... .-.++++|+..+.+. ...||+|++||||...... . -...++ .++ -+.+++
T Consensus 252 ~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~fD~Ii~npPyg~r~~~---~----~~~~~ly~~~~~~l~r~l- 321 (373)
T 3tm4_A 252 KHLIGAEMNALAAGVLDKIKFIQGDATQLSQY--VDSVDFAISNLPYGLKIGK---K----SMIPDLYMKFFNELAKVL- 321 (373)
T ss_dssp HHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT--CSCEEEEEEECCCC-------------CCHHHHHHHHHHHHHHHE-
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChhhCCcc--cCCcCEEEECCCCCcccCc---c----hhHHHHHHHHHHHHHHHc-
Confidence 444444444554444 234777887776532 3689999999999643211 0 012222 111 123333
Q ss_pred CCeEEEEecCCCcchHHHHHHHHhcCcEEEee
Q psy2298 181 ARSFVFLWCGSSEGLDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 181 ~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve~ 212 (366)
..+++|+ +++ .+...+++.+-||+....
T Consensus 322 ~g~~~~i-~~~---~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 322 EKRGVFI-TTE---KKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp EEEEEEE-ESC---HHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEE-ECC---HHHHHHHHHHcCCEEEEE
Confidence 3344444 343 244456888889987643
No 28
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=65.89 E-value=9.2 Score=31.28 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=44.6
Q ss_pred HHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
+.+.....+ -.++.+|+.. .+.. ..||+|+++++ .... -.+..+..+ ++|.+++-..+
T Consensus 75 ~~~~~~~~~~~~~~~~d~~~-~~~~--~~~D~i~~~~~-~~~~----------~~l~~~~~~-------~gG~l~~~~~~ 133 (183)
T 2yxd_A 75 QNLAKFNIKNCQIIKGRAED-VLDK--LEFNKAFIGGT-KNIE----------KIIEILDKK-------KINHIVANTIV 133 (183)
T ss_dssp HHHHHTTCCSEEEEESCHHH-HGGG--CCCSEEEECSC-SCHH----------HHHHHHHHT-------TCCEEEEEESC
T ss_pred HHHHHcCCCcEEEEECCccc-cccC--CCCcEEEECCc-ccHH----------HHHHHHhhC-------CCCEEEEEecc
Confidence 334444432 2367777665 3332 58999999988 1100 012333333 67766665544
Q ss_pred CcchHHHHHHHHhcCcEEEe
Q psy2298 192 SEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 192 ~~~L~~~~ell~~WGFr~ve 211 (366)
...+....+.|+..||++..
T Consensus 134 ~~~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 134 LENAAKIINEFESRGYNVDA 153 (183)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred cccHHHHHHHHHHcCCeEEE
Confidence 34566777899999976543
No 29
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=64.74 E-value=17 Score=29.16 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=37.3
Q ss_pred ccccCCcccc----ccc-c-CCcccEEEECCCCcccccccccccCCC--CCHHHHHcCChhhhccCCeEEEEecCCCcch
Q psy2298 124 FLKCDVKEFN----LKE-L-NVKFDVIHIEPPLEEYQRTLGVTNMQG--WSWDQIMQLEIGEVAAARSFVFLWCGSSEGL 195 (366)
Q Consensus 124 ~i~~Dl~~~~----l~~-l-~~kFDVIliDPPW~~~s~~~G~~~Y~t--ms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L 195 (366)
++.+|+..++ +.. + ...||+|++|+|....... ...+... +...-|. -+.+++.++|.+++-+......
T Consensus 66 ~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~~~L~~gG~l~~~~~~~~~~ 142 (180)
T 1ej0_A 66 FLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTP-AVDIPRAMYLVELALE--MCRDVLAPGGSFVVKVFQGEGF 142 (180)
T ss_dssp EEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCH-HHHHHHHHHHHHHHHH--HHHHHEEEEEEEEEEEESSTTH
T ss_pred EEEcccccchhhhhhhccCCCCceeEEEECCCccccCCC-ccchHHHHHHHHHHHH--HHHHHcCCCcEEEEEEecCCcH
Confidence 5666766553 111 1 3589999999996421100 0000000 0001111 1345667888777754443344
Q ss_pred HHHHHHHHh
Q psy2298 196 DQGRNCLRK 204 (366)
Q Consensus 196 ~~~~ell~~ 204 (366)
....+.+..
T Consensus 143 ~~~~~~~~~ 151 (180)
T 1ej0_A 143 DEYLREIRS 151 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555555
No 30
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=64.08 E-value=2.3 Score=45.06 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=49.1
Q ss_pred HHHHHhhCCC---CCccccCCccccccccCCcccEEEECCCCcccccccccccCCC-CCHHHHHcCChhhhccCCeEEEE
Q psy2298 112 DDLIAETATP---PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQG-WSWDQIMQLEIGEVAAARSFVFL 187 (366)
Q Consensus 112 ~~~i~~~a~p---p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~t-ms~~eI~~LPI~~L~a~~g~lFl 187 (366)
.+.++..... -.++++|+..+ +...+.+||+|++|||.-..+.. ....... -.+.+|... +.+++.++|+|++
T Consensus 579 ~~N~~~ngl~~~~v~~i~~D~~~~-l~~~~~~fD~Ii~DPP~f~~~~~-~~~~~~~~~~~~~ll~~-a~~~LkpgG~L~~ 655 (703)
T 3v97_A 579 ERNLRLNGLTGRAHRLIQADCLAW-LREANEQFDLIFIDPPTFSNSKR-MEDAFDVQRDHLALMKD-LKRLLRAGGTIMF 655 (703)
T ss_dssp HHHHHHTTCCSTTEEEEESCHHHH-HHHCCCCEEEEEECCCSBC--------CCBHHHHHHHHHHH-HHHHEEEEEEEEE
T ss_pred HHHHHHcCCCccceEEEecCHHHH-HHhcCCCccEEEECCccccCCcc-chhHHHHHHHHHHHHHH-HHHhcCCCcEEEE
Confidence 3444444443 23788887654 23345789999999997532211 0000000 012233322 3356678887774
Q ss_pred ecCCCcchHHHHHHHHhcCcEEE
Q psy2298 188 WCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 188 WvTn~~~L~~~~ell~~WGFr~v 210 (366)
=+.. .......+.|...||++.
T Consensus 656 s~~~-~~~~~~~~~l~~~g~~~~ 677 (703)
T 3v97_A 656 SNNK-RGFRMDLDGLAKLGLKAQ 677 (703)
T ss_dssp EECC-TTCCCCHHHHHHTTEEEE
T ss_pred EECC-cccccCHHHHHHcCCcee
Confidence 4443 233344578888898743
No 31
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=63.52 E-value=38 Score=30.50 Aligned_cols=90 Identities=13% Similarity=0.176 Sum_probs=44.4
Q ss_pred ccccCCcccccc----cc-CCcccEEEECCCCcccccc------cc-cccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLK----EL-NVKFDVIHIEPPLEEYQRT------LG-VTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~----~l-~~kFDVIliDPPW~~~s~~------~G-~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
+++.|+..+.-. .+ ..+||+|++|||+...... +. ..+.....++++.+. +..++.++|.+++-...
T Consensus 94 ~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 94 VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRT-ASAIMVSGGQLSLISRP 172 (260)
T ss_dssp EEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHH-HHHHEEEEEEEEEEECG
T ss_pred EEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHH-HHHHcCCCCEEEEEEcH
Confidence 677887766210 11 4689999999999743110 00 011111223343322 34566688877765544
Q ss_pred CcchHHHHHHHHhcCcEEEeeEEEEE
Q psy2298 192 SEGLDQGRNCLRKWGFRRCEDICWIR 217 (366)
Q Consensus 192 ~~~L~~~~ell~~WGFr~ve~~vWvK 217 (366)
..++...++|.+ .|..+ .+..+.
T Consensus 173 -~~~~~~~~~l~~-~~~~~-~i~~v~ 195 (260)
T 2ozv_A 173 -QSVAEIIAACGS-RFGGL-EITLIH 195 (260)
T ss_dssp -GGHHHHHHHHTT-TEEEE-EEEEEE
T ss_pred -HHHHHHHHHHHh-cCCce-EEEEEc
Confidence 346666667766 35433 344444
No 32
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=63.45 E-value=6 Score=37.02 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=44.5
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCc----chHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSE----GLDQGR 199 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~----~L~~~~ 199 (366)
++..|...+.......+||+|++|++-.... ....++.+-+. -+.+++.++|.+++++.+.. ......
T Consensus 153 ~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~------~~~l~~~~~l~--~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 224 (304)
T 3bwc_A 153 VRVGDGLAFVRQTPDNTYDVVIIDTTDPAGP------ASKLFGEAFYK--DVLRILKPDGICCNQGESIWLDLELIEKMS 224 (304)
T ss_dssp EEESCHHHHHHSSCTTCEEEEEEECC---------------CCHHHHH--HHHHHEEEEEEEEEEECCTTTCHHHHHHHH
T ss_pred EEECcHHHHHHhccCCceeEEEECCCCcccc------chhhhHHHHHH--HHHHhcCCCcEEEEecCCcccchHHHHHHH
Confidence 5666665543211246899999998753211 00111222222 23466779999999988631 123445
Q ss_pred HHHHhcCcEEEe
Q psy2298 200 NCLRKWGFRRCE 211 (366)
Q Consensus 200 ell~~WGFr~ve 211 (366)
+.|++-||..+.
T Consensus 225 ~~l~~~GF~~v~ 236 (304)
T 3bwc_A 225 RFIRETGFASVQ 236 (304)
T ss_dssp HHHHHHTCSEEE
T ss_pred HHHHhCCCCcEE
Confidence 677788998664
No 33
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=62.95 E-value=31 Score=29.57 Aligned_cols=79 Identities=5% Similarity=0.130 Sum_probs=44.9
Q ss_pred ccccCCcccc--ccccCCcccEEEECCCCc--ccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHH
Q psy2298 124 FLKCDVKEFN--LKELNVKFDVIHIEPPLE--EYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGR 199 (366)
Q Consensus 124 ~i~~Dl~~~~--l~~l~~kFDVIliDPPW~--~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ 199 (366)
++.+|+..+. +. ...||+|++++|-. ...... ..+....+.+. +.+++.++|.+++=+.+....+...
T Consensus 95 ~~~~d~~~~~~~~~--~~~~D~i~~~~~~~~~~~~~~~-----~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~ 166 (214)
T 1yzh_A 95 LLWVDGSDLTDYFE--DGEIDRLYLNFSDPWPKKRHEK-----RRLTYKTFLDT-FKRILPENGEIHFKTDNRGLFEYSL 166 (214)
T ss_dssp EEECCSSCGGGTSC--TTCCSEEEEESCCCCCSGGGGG-----GSTTSHHHHHH-HHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred EEeCCHHHHHhhcC--CCCCCEEEEECCCCccccchhh-----hccCCHHHHHH-HHHHcCCCcEEEEEeCCHHHHHHHH
Confidence 7888887653 22 35799999997632 211000 00122333221 3456678888777554433345566
Q ss_pred HHHHhcCcEEE
Q psy2298 200 NCLRKWGFRRC 210 (366)
Q Consensus 200 ell~~WGFr~v 210 (366)
++|..-||+.+
T Consensus 167 ~~~~~~g~~~~ 177 (214)
T 1yzh_A 167 VSFSQYGMKLN 177 (214)
T ss_dssp HHHHHHTCEEE
T ss_pred HHHHHCCCeee
Confidence 78888798754
No 34
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=61.54 E-value=66 Score=27.76 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=42.9
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
++..|+....+. ...||+|++|||-.. -.++.+ .+++.++|.+++.+.+...+....+.|+
T Consensus 144 ~~~~d~~~~~~~--~~~~D~v~~~~~~~~------------~~l~~~-----~~~L~~gG~l~~~~~~~~~~~~~~~~l~ 204 (248)
T 2yvl_A 144 FFNVDFKDAEVP--EGIFHAAFVDVREPW------------HYLEKV-----HKSLMEGAPVGFLLPTANQVIKLLESIE 204 (248)
T ss_dssp EECSCTTTSCCC--TTCBSEEEECSSCGG------------GGHHHH-----HHHBCTTCEEEEEESSHHHHHHHHHHST
T ss_pred EEEcChhhcccC--CCcccEEEECCcCHH------------HHHHHH-----HHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 566776654212 358999999987210 122333 3556789999988886434555566666
Q ss_pred hcCcEEEeeE
Q psy2298 204 KWGFRRCEDI 213 (366)
Q Consensus 204 ~WGFr~ve~~ 213 (366)
.. |.-++.+
T Consensus 205 ~~-f~~~~~~ 213 (248)
T 2yvl_A 205 NY-FGNLEVV 213 (248)
T ss_dssp TT-EEEEEEE
T ss_pred hh-CCcceEE
Confidence 66 7655543
No 35
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=61.44 E-value=28 Score=33.23 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=47.2
Q ss_pred HHHHHhhCCC-CCccccCCcc-ccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCe-E-EEE
Q psy2298 112 DDLIAETATP-PMFLKCDVKE-FNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARS-F-VFL 187 (366)
Q Consensus 112 ~~~i~~~a~p-p~~i~~Dl~~-~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g-~-lFl 187 (366)
.+.+.+.... -.|+.+|+.. +.. .....||+|++|||+... + ...+.+- +.+++.++| + +|.
T Consensus 212 ~~~~~~~g~~~v~~~~~D~~~~l~~-~~~~~fD~Vi~~~p~~~~----~--------~~~~l~~-~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 212 EKAANEIGYEDIEIFTFDLRKPLPD-YALHKFDTFITDPPETLE----A--------IRAFVGR-GIATLKGPRCAGYFG 277 (373)
T ss_dssp HHHHHHHTCCCEEEECCCTTSCCCT-TTSSCBSEEEECCCSSHH----H--------HHHHHHH-HHHTBCSTTCEEEEE
T ss_pred HHHHHHcCCCCEEEEEChhhhhchh-hccCCccEEEECCCCchH----H--------HHHHHHH-HHHHcccCCeEEEEE
Confidence 3444444442 2377888776 321 124589999999997421 0 1222211 334556778 4 555
Q ss_pred ecCCCcch---HHHHHHHH-hcCcEEEee
Q psy2298 188 WCGSSEGL---DQGRNCLR-KWGFRRCED 212 (366)
Q Consensus 188 WvTn~~~L---~~~~ell~-~WGFr~ve~ 212 (366)
.+...... ....+++. ..||+....
T Consensus 278 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 306 (373)
T 2qm3_A 278 ITRRESSLDKWREIQKLLLNEFNVVITDI 306 (373)
T ss_dssp ECTTTCCHHHHHHHHHHHHHTSCCEEEEE
T ss_pred EecCcCCHHHHHHHHHHHHHhcCcchhhh
Confidence 55411223 44556777 889877643
No 36
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=58.38 E-value=16 Score=34.47 Aligned_cols=81 Identities=12% Similarity=-0.071 Sum_probs=43.0
Q ss_pred Cc-cccCCccccccccCCcccEEEECCC--CcccccccccccCCCCC-HHHHHcCChhhhccCCeEEEE--ecCCCcchH
Q psy2298 123 MF-LKCDVKEFNLKELNVKFDVIHIEPP--LEEYQRTLGVTNMQGWS-WDQIMQLEIGEVAAARSFVFL--WCGSSEGLD 196 (366)
Q Consensus 123 ~~-i~~Dl~~~~l~~l~~kFDVIliDPP--W~~~s~~~G~~~Y~tms-~~eI~~LPI~~L~a~~g~lFl--WvTn~~~L~ 196 (366)
.| ++.|+..+.+. .+||+|+.|++ |.-.. . ..+..... ++++.+ -+.+++.++|.+++ |... ..+
T Consensus 108 ~~~i~gD~~~~~~~---~~fD~Vvsn~~~~~~g~~-~--~d~~~~~~l~~~~l~-~a~r~LkpGG~~v~~~~~~~--~~~ 178 (290)
T 2xyq_A 108 DSTLIGDCATVHTA---NKWDLIISDMYDPRTKHV-T--KENDSKEGFFTYLCG-FIKQKLALGGSIAVKITEHS--WNA 178 (290)
T ss_dssp SEEEESCGGGCCCS---SCEEEEEECCCCCC---C-C--SCCCCCCTHHHHHHH-HHHHHEEEEEEEEEEECSSS--CCH
T ss_pred EEEEECccccCCcc---CcccEEEEcCCccccccc-c--ccccchHHHHHHHHH-HHHHhcCCCcEEEEEEeccC--CHH
Confidence 36 77777665433 58999999954 31000 0 01111111 112211 13455667786655 4443 345
Q ss_pred HHHHHHHhcCcEEEee
Q psy2298 197 QGRNCLRKWGFRRCED 212 (366)
Q Consensus 197 ~~~ell~~WGFr~ve~ 212 (366)
...++|++-||..++.
T Consensus 179 ~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 179 DLYKLMGHFSWWTAFV 194 (290)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHcCCcEEEE
Confidence 6667899888876543
No 37
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=58.33 E-value=18 Score=34.24 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=42.3
Q ss_pred HHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEec
Q psy2298 112 DDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWC 189 (366)
Q Consensus 112 ~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWv 189 (366)
.+.++...... .+++.|+..+. .+||+|++|||.... --++.+ -+++.++|.+++-+
T Consensus 233 ~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~Vi~dpP~~~~-----------~~l~~~-----~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 233 KKNIKLNKLEHKIIPILSDVREVD-----VKGNRVIMNLPKFAH-----------KFIDKA-----LDIVEEGGVIHYYT 291 (336)
T ss_dssp HHHHHHTTCTTTEEEEESCGGGCC-----CCEEEEEECCTTTGG-----------GGHHHH-----HHHEEEEEEEEEEE
T ss_pred HHHHHHcCCCCcEEEEECChHHhc-----CCCcEEEECCcHhHH-----------HHHHHH-----HHHcCCCCEEEEEE
Confidence 34444444432 37788877663 689999999995310 011222 23455788666644
Q ss_pred CCCcchHHHHHHHHhc-CcEE
Q psy2298 190 GSSEGLDQGRNCLRKW-GFRR 209 (366)
Q Consensus 190 Tn~~~L~~~~ell~~W-GFr~ 209 (366)
.+.. .+...+.+..- ||+.
T Consensus 292 ~~~~-~~~~~~~l~~~~~~~i 311 (336)
T 2yx1_A 292 IGKD-FDKAIKLFEKKCDCEV 311 (336)
T ss_dssp EESS-SHHHHHHHHHHSEEEE
T ss_pred eecC-chHHHHHHHHhcCCcE
Confidence 4322 55555666655 5554
No 38
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=57.84 E-value=7.4 Score=31.67 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCccccCCcccc--ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCC
Q psy2298 122 PMFLKCDVKEFN--LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSS 192 (366)
Q Consensus 122 p~~i~~Dl~~~~--l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~ 192 (366)
-.++..|+..+. +..-+.+||+|++|||+. ... .-..+.+.+ .+++.++|.+++=+...
T Consensus 90 ~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~--------~~~~~~~~~---~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 90 ARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDL--------AALFGELLA---SGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCT--------THHHHHHHH---HTCEEEEEEEEEEEETT
T ss_pred eEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhH--------HHHHHHHHh---hcccCCCcEEEEEeCCc
Confidence 346777766531 221134899999999985 110 012233433 35666888776655543
No 39
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=56.89 E-value=4.3 Score=33.72 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=31.9
Q ss_pred ccccCCcccc--ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFN--LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~--l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
++.+|+..+. +.....+||+|++|||+.... ..+.+..+-..+++.++|.+++=+.+
T Consensus 98 ~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~-----------~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 98 VRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE-----------IVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC-----------HHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred EEECcHHHHHHHHHhcCCCCCEEEECCCCCchh-----------HHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 6777766542 111146899999999964210 11222222224556688877765554
No 40
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=56.70 E-value=60 Score=27.09 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=17.2
Q ss_pred CCCccccCCccccccccCCcccEEEEC
Q psy2298 121 PPMFLKCDVKEFNLKELNVKFDVIHIE 147 (366)
Q Consensus 121 pp~~i~~Dl~~~~l~~l~~kFDVIliD 147 (366)
.-.++.+|+..+.+. ...||+|++.
T Consensus 77 ~~~~~~~d~~~~~~~--~~~fD~v~~~ 101 (202)
T 2kw5_A 77 KITTVQSNLADFDIV--ADAWEGIVSI 101 (202)
T ss_dssp CEEEECCBTTTBSCC--TTTCSEEEEE
T ss_pred ceEEEEcChhhcCCC--cCCccEEEEE
Confidence 334777887776533 4689999983
No 41
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=56.34 E-value=18 Score=35.19 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=40.6
Q ss_pred hHHHHHHhhCCCCCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEE
Q psy2298 110 LKDDLIAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFL 187 (366)
Q Consensus 110 lk~~~i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFl 187 (366)
.-.+.+......-.++.+|+..+... ...||+|++|||+.... ....+++.++ -+.+++.++|.+++
T Consensus 270 ~A~~n~~~~~~~v~~~~~D~~~~~~~--~~~fD~Ii~npp~~~~~---------~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 270 SLQKGLEANALKAQALHSDVDEALTE--EARFDIIVTNPPFHVGG---------AVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp HHHHHHHHTTCCCEEEECSTTTTSCT--TCCEEEEEECCCCCTTC---------SSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEcchhhcccc--CCCeEEEEECCchhhcc---------cccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 33344444444455788887766432 46999999999986311 0122222222 23456678887777
Q ss_pred ecCC
Q psy2298 188 WCGS 191 (366)
Q Consensus 188 WvTn 191 (366)
=+..
T Consensus 339 v~n~ 342 (381)
T 3dmg_A 339 VSNP 342 (381)
T ss_dssp EECT
T ss_pred EEcC
Confidence 5543
No 42
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=55.06 E-value=16 Score=33.76 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=36.7
Q ss_pred cccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEE
Q psy2298 140 KFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 140 kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~v 210 (366)
.||+|++|| |.- ..+-..|+.+-+. -+.+++.++|.+..|+.++ ..+..|..=||++.
T Consensus 173 ~~D~iflD~-fsp------~~~p~lw~~~~l~--~l~~~L~pGG~l~tysaa~----~vrr~L~~aGF~v~ 230 (257)
T 2qy6_A 173 KVDAWFLDG-FAP------AKNPDMWTQNLFN--AMARLARPGGTLATFTSAG----FVRRGLQEAGFTMQ 230 (257)
T ss_dssp CEEEEEECS-SCT------TTCGGGCCHHHHH--HHHHHEEEEEEEEESCCBH----HHHHHHHHHTEEEE
T ss_pred eEEEEEECC-CCc------ccChhhcCHHHHH--HHHHHcCCCcEEEEEeCCH----HHHHHHHHCCCEEE
Confidence 799999996 321 1122334544443 2566778999999999863 23445666699854
No 43
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=54.87 E-value=32 Score=33.58 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=63.1
Q ss_pred CCCccccCCccccccccCCcccEEEECCCCccccccccc-ccC--CCCCHHHH-HcCChhhhccCCeEEEEecCCCcchH
Q psy2298 121 PPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGV-TNM--QGWSWDQI-MQLEIGEVAAARSFVFLWCGSSEGLD 196 (366)
Q Consensus 121 pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~-~~Y--~tms~~eI-~~LPI~~L~a~~g~lFlWvTn~~~L~ 196 (366)
++++|+.|...+.. +.+|||||-|=- ++ ..|. ... ..+.+-|+ ..+-.. .+++.|-+.+=+..+..-+
T Consensus 153 a~~~IqGD~~~~~~---~~k~DLVISDMA-PN---tTG~~D~d~~Rs~~L~ElALdfA~~-~LkpGGsFvVKVFQGsg~~ 224 (344)
T 3r24_A 153 ADSTLIGDCATVHT---ANKWDLIISDMY-DP---RTKHVTKENDSKEGFFTYLCGFIKQ-KLALGGSIAVKITEHSWNA 224 (344)
T ss_dssp SSEEEESCGGGEEE---SSCEEEEEECCC-CT---TSCSSCSCCCCCCTHHHHHHHHHHH-HEEEEEEEEEEECSSSCCH
T ss_pred CCeEEEcccccccc---CCCCCEEEecCC-CC---cCCccccchhHHHHHHHHHHHHHHH-hCcCCCEEEEEEecCCCHH
Confidence 34567777654332 479999999921 01 2231 111 23444443 233333 3457887777777665544
Q ss_pred HHHHHHHhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEE--EeCCCcCCCCCCccccc
Q psy2298 197 QGRNCLRKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMG--IKGTVRRSTDGDFIHAN 262 (366)
Q Consensus 197 ~~~ell~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG--~rG~vrrstd~~~ih~n 262 (366)
.-.++++ -|..+..+ |.... .++.|.-|+| .||.....-||+.+|+|
T Consensus 225 ~L~~lrk--~F~~VK~f---K~ASR--------------a~SsEvYLVG~gfKg~~~~~idg~~~han 273 (344)
T 3r24_A 225 DLYKLMG--HFSWWTAF---VTNVN--------------ASSSEAFLIGANYLGKPKEQIDGYTMHAN 273 (344)
T ss_dssp HHHHHHT--TEEEEEEE---EEGGG--------------TTSSCEEEEEEEECSSCSSCCCHHHHHHH
T ss_pred HHHHHHh--hCCeEEEE---CCCCC--------------CCCeeEEEEeeeccCCCceeeccceeeee
Confidence 4444553 56666555 32111 2578999987 45765445577666654
No 44
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=53.55 E-value=4.3 Score=37.76 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=19.3
Q ss_pred ccccCCccccccccCCcccEEEECCCCcc
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
+++.|...+ +..+...||+|++|||+..
T Consensus 149 ~~~~D~~~~-L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 149 LIHASSLTA-LTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp EEESCHHHH-STTCSSCCSEEEECCCCCC
T ss_pred EEECCHHHH-HHhCcccCCEEEEcCCCCC
Confidence 567776554 2333347999999999964
No 45
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=52.83 E-value=33 Score=31.27 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=30.9
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
|++.|+..+. . ..+||+|++|||-.. . -.+.++ -.++.++|++++-|..
T Consensus 173 ~~~~d~~~~~--~-~~~~D~Vi~d~p~~~----------~-~~l~~~-----~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 173 PILADNRDVE--L-KDVADRVIMGYVHKT----------H-KFLDKT-----FEFLKDRGVIHYHETV 221 (272)
T ss_dssp EEESCGGGCC--C-TTCEEEEEECCCSSG----------G-GGHHHH-----HHHEEEEEEEEEEEEE
T ss_pred EEECChHHcC--c-cCCceEEEECCcccH----------H-HHHHHH-----HHHcCCCCEEEEEEcC
Confidence 7888887762 1 568999999999511 0 011221 1334578888877765
No 46
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=52.79 E-value=64 Score=26.08 Aligned_cols=82 Identities=9% Similarity=-0.020 Sum_probs=46.1
Q ss_pred HHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
+.+.....+ ..++.+|... .+......||+|+++.+... .-.+.++. +++.++|.+++=...
T Consensus 67 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~D~i~~~~~~~~-----------~~~l~~~~-----~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 67 SNAINLGVSDRIAVQQGAPR-AFDDVPDNPDVIFIGGGLTA-----------PGVFAAAW-----KRLPVGGRLVANAVT 129 (178)
T ss_dssp HHHHTTTCTTSEEEECCTTG-GGGGCCSCCSEEEECC-TTC-----------TTHHHHHH-----HTCCTTCEEEEEECS
T ss_pred HHHHHhCCCCCEEEecchHh-hhhccCCCCCEEEECCcccH-----------HHHHHHHH-----HhcCCCCEEEEEeec
Confidence 334444444 2256666643 34444368999999765431 01223332 456688877664443
Q ss_pred CcchHHHHHHHHhcCcEEEe
Q psy2298 192 SEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 192 ~~~L~~~~ell~~WGFr~ve 211 (366)
.+......++++..|++...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 130 VESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp HHHHHHHHHHHHHHCCEEEE
T ss_pred cccHHHHHHHHHHcCCeeEE
Confidence 23456667789999976643
No 47
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=52.78 E-value=9.7 Score=34.15 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=42.1
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
++..|+....+. ...||+|++|+|=.. -.++++ .+++.++|.+++.+.+...+....+.|.
T Consensus 157 ~~~~d~~~~~~~--~~~~D~v~~~~~~~~------------~~l~~~-----~~~L~pgG~l~~~~~~~~~~~~~~~~l~ 217 (280)
T 1i9g_A 157 LVVSDLADSELP--DGSVDRAVLDMLAPW------------EVLDAV-----SRLLVAGGVLMVYVATVTQLSRIVEALR 217 (280)
T ss_dssp EECSCGGGCCCC--TTCEEEEEEESSCGG------------GGHHHH-----HHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEECchHhcCCC--CCceeEEEECCcCHH------------HHHHHH-----HHhCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 667777665432 458999999876110 012222 3456688998888876444555555566
Q ss_pred h-cCcEEEe
Q psy2298 204 K-WGFRRCE 211 (366)
Q Consensus 204 ~-WGFr~ve 211 (366)
. .||.-.+
T Consensus 218 ~~~~f~~~~ 226 (280)
T 1i9g_A 218 AKQCWTEPR 226 (280)
T ss_dssp HHSSBCCCE
T ss_pred hcCCcCCcE
Confidence 5 7876544
No 48
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=51.64 E-value=20 Score=31.69 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHhhCCCC--CccccCCccc---ccccc-CCcccEEEECCCCcc
Q psy2298 112 DDLIAETATPP--MFLKCDVKEF---NLKEL-NVKFDVIHIEPPLEE 152 (366)
Q Consensus 112 ~~~i~~~a~pp--~~i~~Dl~~~---~l~~l-~~kFDVIliDPPW~~ 152 (366)
.+.+....... .++++|+... .+... ..+||+|++|||+..
T Consensus 106 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~ 152 (254)
T 2h00_A 106 KKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFA 152 (254)
T ss_dssp HHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred HHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCcc
Confidence 34444455543 3788887652 12211 158999999999863
No 49
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=51.22 E-value=47 Score=32.54 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHhhCCC-CCccccCCcccc--ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecC
Q psy2298 114 LIAETATP-PMFLKCDVKEFN--LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCG 190 (366)
Q Consensus 114 ~i~~~a~p-p~~i~~Dl~~~~--l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvT 190 (366)
.......+ -.|+..|+..+- +.....+||+|++|||.. | +. +.+..| ..+ .+.+++++=|.
T Consensus 327 n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~------g------~~-~~~~~l--~~~-~p~~ivyvsc~ 390 (433)
T 1uwv_A 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA------G------AA-GVMQQI--IKL-EPIRIVYVSCN 390 (433)
T ss_dssp HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTT------C------CH-HHHHHH--HHH-CCSEEEEEESC
T ss_pred HHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCc------c------HH-HHHHHH--Hhc-CCCeEEEEECC
Confidence 33334443 237888877631 111235899999999963 2 11 222222 122 36778888665
Q ss_pred CCcchHHHHHHHHhcCcEEEe
Q psy2298 191 SSEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 191 n~~~L~~~~ell~~WGFr~ve 211 (366)
. ..+..-..+|..=||+...
T Consensus 391 p-~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 391 P-ATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp H-HHHHHHHHHHHHTTCEEEE
T ss_pred h-HHHHhhHHHHHHCCcEEEE
Confidence 4 2344444456555887654
No 50
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=50.31 E-value=63 Score=27.26 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=47.7
Q ss_pred HHHHhhCCC-CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEec--
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWC-- 189 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWv-- 189 (366)
+.+.....+ -.++.+|+..+.+. ...||+|++.-.... .. ....+.+ -+.+++.++|.+++-.
T Consensus 80 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~v~~~~~l~~---------~~--~~~~~l~-~~~~~LkpgG~l~i~~~~ 145 (219)
T 3dh0_A 80 EKVNKLGLKNVEVLKSEENKIPLP--DNTVDFIFMAFTFHE---------LS--EPLKFLE-ELKRVAKPFAYLAIIDWK 145 (219)
T ss_dssp HHHHHHTCTTEEEEECBTTBCSSC--SSCEEEEEEESCGGG---------CS--SHHHHHH-HHHHHEEEEEEEEEEEEC
T ss_pred HHHHHcCCCcEEEEecccccCCCC--CCCeeEEEeehhhhh---------cC--CHHHHHH-HHHHHhCCCeEEEEEEec
Confidence 333444443 23778888766533 468999999643321 00 1111111 1335566888776643
Q ss_pred CCCc----------chHHHHHHHHhcCcEEEee
Q psy2298 190 GSSE----------GLDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 190 Tn~~----------~L~~~~ell~~WGFr~ve~ 212 (366)
.... ..+...++|+.-||+.++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 146 KEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp SSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 2210 1355667899999998865
No 51
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=48.63 E-value=16 Score=35.28 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=41.9
Q ss_pred CccccCCcccc--ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcch-----
Q psy2298 123 MFLKCDVKEFN--LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGL----- 195 (366)
Q Consensus 123 ~~i~~Dl~~~~--l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L----- 195 (366)
.|+..|+..+. +...+.+||+|++|||....+.. ...-..-.+.++... +-.++.++|+|++=+... .+
T Consensus 274 ~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~--~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~-~~~~~~~ 349 (396)
T 3c0k_A 274 EFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKS--QLMGACRGYKDINML-AIQLLNEGGILLTFSCSG-LMTSDLF 349 (396)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSS--SSSCCCTHHHHHHHH-HHHTEEEEEEEEEEECCT-TCCHHHH
T ss_pred EEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChh--HHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC-cCCHHHH
Confidence 37777876552 11124689999999997532211 000000112333222 224556788877765543 22
Q ss_pred -HHHHHHHHhcCcEE
Q psy2298 196 -DQGRNCLRKWGFRR 209 (366)
Q Consensus 196 -~~~~ell~~WGFr~ 209 (366)
+...+.+...|+++
T Consensus 350 ~~~i~~~~~~~g~~~ 364 (396)
T 3c0k_A 350 QKIIADAAIDAGRDV 364 (396)
T ss_dssp HHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCeE
Confidence 12234566677544
No 52
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=48.52 E-value=9 Score=37.75 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=33.1
Q ss_pred CCcccEEEECCCC-cccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 138 NVKFDVIHIEPPL-EEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 138 ~~kFDVIliDPPW-~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
+.+||||++|||= +... +..+ ..+.+-+..+ -+.+++.++|++++++.+ ..+.....+++
T Consensus 265 ~~~fDvII~D~~d~P~~~---~p~~--L~t~eFy~~~~~~~~~~L~pgGilv~qs~s-~~~~e~~~~~~ 327 (364)
T 2qfm_A 265 GREFDYVINDLTAVPIST---SPEE--DSTWEFLRLILDLSMKVLKQDGKYFTQGNC-VNLTEALSLYE 327 (364)
T ss_dssp TCCEEEEEEECCSSCCCC---C------CHHHHHHHHHHHHHHTEEEEEEEEEEEEE-TTCHHHHHHHH
T ss_pred CCCceEEEECCCCcccCc---Cchh--hhHHHHHHHHHHHHHhhCCCCcEEEEEcCC-cchHHHHHHHH
Confidence 5689999999964 2111 0101 1122212111 124566799999999987 45655554444
No 53
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=47.99 E-value=18 Score=35.40 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=26.4
Q ss_pred HHHHhHHHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcc
Q psy2298 106 ELIKLKDDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 106 ~l~~lk~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
+.+++=.+.+......- .+++.|+..+... ..||+|++||||-.
T Consensus 267 ~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~---~~fD~Iv~NPPYG~ 312 (384)
T 3ldg_A 267 RMVEIARKNAREVGLEDVVKLKQMRLQDFKTN---KINGVLISNPPYGE 312 (384)
T ss_dssp HHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC---CCSCEEEECCCCTT
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChHHCCcc---CCcCEEEECCchhh
Confidence 33444444444444432 3666676665432 48999999999954
No 54
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=47.62 E-value=24 Score=32.41 Aligned_cols=59 Identities=8% Similarity=0.005 Sum_probs=34.5
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
++..|...+ +.....+||+|++|++-.... .....+.+-+.. +.+++.++|++.+++.+
T Consensus 133 v~~~D~~~~-l~~~~~~fD~Ii~d~~~~~~~------~~~l~~~~~~~~--~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 133 VQVDDGFMH-IAKSENQYDVIMVDSTEPVGP------AVNLFTKGFYAG--IAKALKEDGIFVAQTDN 191 (275)
T ss_dssp EEESCSHHH-HHTCCSCEEEEEESCSSCCSC------CCCCSTTHHHHH--HHHHEEEEEEEEEECCC
T ss_pred EEECcHHHH-HhhCCCCeeEEEECCCCCCCc------chhhhHHHHHHH--HHHhcCCCcEEEEEcCC
Confidence 566665543 223357899999999864211 011122222222 23566799999999876
No 55
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=47.39 E-value=1.2e+02 Score=26.64 Aligned_cols=90 Identities=10% Similarity=0.199 Sum_probs=52.0
Q ss_pred HHhHHHHHHhhCCCCC--ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEE
Q psy2298 108 IKLKDDLIAETATPPM--FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFV 185 (366)
Q Consensus 108 ~~lk~~~i~~~a~pp~--~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~l 185 (366)
++.-.+.++....++. ++.+|+..+.+. ...||+|++...... +....+.+ -+.+++.++|.+
T Consensus 82 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~i~~~~~~~~------------~~~~~~l~-~~~~~LkpgG~l 146 (267)
T 3kkz_A 82 IDIFNRNARQSGLQNRVTGIVGSMDDLPFR--NEELDLIWSEGAIYN------------IGFERGLN-EWRKYLKKGGYL 146 (267)
T ss_dssp HHHHHHHHHHTTCTTTEEEEECCTTSCCCC--TTCEEEEEESSCGGG------------TCHHHHHH-HHGGGEEEEEEE
T ss_pred HHHHHHHHHHcCCCcCcEEEEcChhhCCCC--CCCEEEEEEcCCcee------------cCHHHHHH-HHHHHcCCCCEE
Confidence 3333445555556543 888898776543 468999999755421 13333222 234566688877
Q ss_pred EE----ecCCCc----------------chHHHHHHHHhcCcEEEee
Q psy2298 186 FL----WCGSSE----------------GLDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 186 Fl----WvTn~~----------------~L~~~~ell~~WGFr~ve~ 212 (366)
++ |..... ..+.-.++|++=||+.++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 147 AVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred EEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 66 443321 1233446778889988765
No 56
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=47.06 E-value=69 Score=28.00 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=49.5
Q ss_pred HHHhhCCCC-CccccCCcccccc-ccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 114 LIAETATPP-MFLKCDVKEFNLK-ELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 114 ~i~~~a~pp-~~i~~Dl~~~~l~-~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
.+.....+. .++.+|+..+.+. .....||+|+++.. ...+.+.+. +..++.++|.++++...
T Consensus 113 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~---------------~~~~~~l~~-~~~~LkpgG~l~~~~g~ 176 (240)
T 1xdz_A 113 LSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV---------------ARLSVLSEL-CLPLVKKNGLFVALKAA 176 (240)
T ss_dssp HHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC---------------SCHHHHHHH-HGGGEEEEEEEEEEECC
T ss_pred HHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc---------------CCHHHHHHH-HHHhcCCCCEEEEEeCC
Confidence 344444432 3677787766532 23468999999531 123333332 33556788988887654
Q ss_pred Cc--chHHHHHHHHhcCcEEEeeEEE
Q psy2298 192 SE--GLDQGRNCLRKWGFRRCEDICW 215 (366)
Q Consensus 192 ~~--~L~~~~ell~~WGFr~ve~~vW 215 (366)
.. .++...+.++.-||+.++...+
T Consensus 177 ~~~~~~~~~~~~l~~~g~~~~~~~~~ 202 (240)
T 1xdz_A 177 SAEEELNAGKKAITTLGGELENIHSF 202 (240)
T ss_dssp -CHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CchHHHHHHHHHHHHcCCeEeEEEEE
Confidence 21 1233456778889988775544
No 57
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=47.01 E-value=36 Score=28.54 Aligned_cols=78 Identities=10% Similarity=0.036 Sum_probs=43.3
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCc---------
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSE--------- 193 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~--------- 193 (366)
.|+.+|+..+.+. ...||+|++.-.... ...-....+.+ -+.+++.++|.+++=+.+..
T Consensus 87 ~~~~~d~~~~~~~--~~~fD~v~~~~~l~~---------~~~~~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~~ 154 (203)
T 3h2b_A 87 TFHHGTITDLSDS--PKRWAGLLAWYSLIH---------MGPGELPDALV-ALRMAVEDGGGLLMSFFSGPSLEPMYHPV 154 (203)
T ss_dssp EEECCCGGGGGGS--CCCEEEEEEESSSTT---------CCTTTHHHHHH-HHHHTEEEEEEEEEEEECCSSCEEECCSS
T ss_pred eEEeCcccccccC--CCCeEEEEehhhHhc---------CCHHHHHHHHH-HHHHHcCCCcEEEEEEccCCchhhhhchh
Confidence 3778888776533 469999999533221 00001111111 23455667886665332211
Q ss_pred ------chHHHHHHHHhcCcEEEee
Q psy2298 194 ------GLDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 194 ------~L~~~~ell~~WGFr~ve~ 212 (366)
..+.-.++|+.=||+.++.
T Consensus 155 ~~~~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 155 ATAYRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp SCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred hhhccCCHHHHHHHHHHCCCcEEEE
Confidence 1355667899999988764
No 58
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=45.27 E-value=12 Score=32.69 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHHHhhCCC--CCccccCCccccccccCCcccEEEECCCCcc
Q psy2298 112 DDLIAETATP--PMFLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 112 ~~~i~~~a~p--p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
.+.+...... -.|+.+|+..+. ....||+|++|||+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 117 RNNAEVYGIADKIEFICGDFLLLA---SFLKADVVFLSPPWGG 156 (241)
T ss_dssp HHHHHHTTCGGGEEEEESCHHHHG---GGCCCSEEEECCCCSS
T ss_pred HHHHHHcCCCcCeEEEECChHHhc---ccCCCCEEEECCCcCC
Confidence 3334444442 236777776654 2369999999999974
No 59
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=42.99 E-value=36 Score=33.62 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 120 TPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 120 ~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
..-.|+..|+..+. . .+||+|++|||.. | +...-+..|- . +.++|+|++=|..
T Consensus 337 l~v~~~~~d~~~~~-~---~~fD~Vv~dPPr~------g------~~~~~~~~l~--~-l~p~givyvsc~p 389 (425)
T 2jjq_A 337 VDAEFEVASDREVS-V---KGFDTVIVDPPRA------G------LHPRLVKRLN--R-EKPGVIVYVSCNP 389 (425)
T ss_dssp CCEEEEECCTTTCC-C---TTCSEEEECCCTT------C------SCHHHHHHHH--H-HCCSEEEEEESCH
T ss_pred CcEEEEECChHHcC-c---cCCCEEEEcCCcc------c------hHHHHHHHHH--h-cCCCcEEEEECCh
Confidence 33347788877653 1 2899999999952 2 1212233331 2 3578999887643
No 60
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=42.46 E-value=81 Score=26.26 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=18.4
Q ss_pred CCCccccCCccccccccCCcccEEEECC
Q psy2298 121 PPMFLKCDVKEFNLKELNVKFDVIHIEP 148 (366)
Q Consensus 121 pp~~i~~Dl~~~~l~~l~~kFDVIliDP 148 (366)
.-.++.+|+..+.+. ...||+|++.-
T Consensus 72 ~~~~~~~d~~~~~~~--~~~fD~v~~~~ 97 (209)
T 2p8j_A 72 KLNISKGDIRKLPFK--DESMSFVYSYG 97 (209)
T ss_dssp CCCEEECCTTSCCSC--TTCEEEEEECS
T ss_pred ceEEEECchhhCCCC--CCceeEEEEcC
Confidence 345788888776532 46899999853
No 61
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=41.90 E-value=25 Score=34.35 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=18.9
Q ss_pred ccccCCccccccccCCcccEEEECCCCcc
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
++++|+..+.. ...||+|++|||+-.
T Consensus 294 ~~~~D~~~~~~---~~~fD~Iv~NPPYg~ 319 (393)
T 3k0b_A 294 FRQLQVADFQT---EDEYGVVVANPPYGE 319 (393)
T ss_dssp EEECCGGGCCC---CCCSCEEEECCCCCC
T ss_pred EEECChHhCCC---CCCCCEEEECCCCcc
Confidence 66667665543 248999999999854
No 62
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=41.81 E-value=19 Score=30.98 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=31.1
Q ss_pred ccccCCccccccccCCc-ccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVK-FDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~k-FDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
++..|+..+........ ||+|++|||+.. + .+. -.+..+.+ ..++.++|.+++-+..
T Consensus 108 ~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~-----~--~~~-~~l~~~~~---~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 108 VINQSSLDFLKQPQNQPHFDVVFLDPPFHF-----N--LAE-QAISLLCE---NNWLKPNALIYVETEK 165 (201)
T ss_dssp EECSCHHHHTTSCCSSCCEEEEEECCCSSS-----C--HHH-HHHHHHHH---TTCEEEEEEEEEEEES
T ss_pred EEECCHHHHHHhhccCCCCCEEEECCCCCC-----c--cHH-HHHHHHHh---cCccCCCcEEEEEECC
Confidence 67777665421111457 999999999631 1 000 01122222 3456688877766554
No 63
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=41.76 E-value=13 Score=30.70 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEec
Q psy2298 112 DDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWC 189 (366)
Q Consensus 112 ~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWv 189 (366)
.+.++....++ .++..|+..+ +......||+|++|||+...... -.+..|.+ .+++.++|.+++-+
T Consensus 71 ~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~i~~~~~~~~~~~~--------~~~~~l~~---~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 71 QDNIIMTKAENRFTLLKMEAERA-IDCLTGRFDLVFLDPPYAKETIV--------ATIEALAA---KNLLSEQVMVVCET 138 (177)
T ss_dssp HHHHHTTTCGGGEEEECSCHHHH-HHHBCSCEEEEEECCSSHHHHHH--------HHHHHHHH---TTCEEEEEEEEEEE
T ss_pred HHHHHHcCCCCceEEEECcHHHh-HHhhcCCCCEEEECCCCCcchHH--------HHHHHHHh---CCCcCCCcEEEEEE
Confidence 34444444432 2667776553 22234579999999997321000 01223332 35566888777766
Q ss_pred CCC
Q psy2298 190 GSS 192 (366)
Q Consensus 190 Tn~ 192 (366)
...
T Consensus 139 ~~~ 141 (177)
T 2esr_A 139 DKT 141 (177)
T ss_dssp ETT
T ss_pred CCc
Confidence 553
No 64
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=41.23 E-value=5 Score=40.05 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=20.3
Q ss_pred CccccCCcccccccc-CCcccEEEECCCCcc
Q psy2298 123 MFLKCDVKEFNLKEL-NVKFDVIHIEPPLEE 152 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l-~~kFDVIliDPPW~~ 152 (366)
.++++|+..+ +..+ +..||+|++|||+..
T Consensus 146 ~~i~~Da~~~-L~~~~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 146 NILTGDFKEY-LPLIKTFHPDYIYVDPARRS 175 (410)
T ss_dssp EEEESCGGGS-HHHHHHHCCSEEEECCEEC-
T ss_pred EEEECcHHHh-hhhccCCCceEEEECCCCcC
Confidence 3788887764 2222 358999999999975
No 65
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=40.72 E-value=43 Score=28.93 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=42.1
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEEecCCCc--------
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFLWCGSSE-------- 193 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWvTn~~-------- 193 (366)
|+.+|+..+.. ...||+|++-... ++ +..++..++ -+.+++.++|.+++..-...
T Consensus 119 ~~~~d~~~~~~---~~~fD~v~~~~~l----------~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 183 (235)
T 3lcc_A 119 FVKEDVFTWRP---TELFDLIFDYVFF----------CA--IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPY 183 (235)
T ss_dssp EECCCTTTCCC---SSCEEEEEEESST----------TT--SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSC
T ss_pred EEECchhcCCC---CCCeeEEEEChhh----------hc--CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCc
Confidence 77788777652 3489999984322 11 221121111 23456678887776443210
Q ss_pred --chHHHHHHHHhcCcEEEe
Q psy2298 194 --GLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 194 --~L~~~~ell~~WGFr~ve 211 (366)
..+...++|+.-||+.++
T Consensus 184 ~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 184 KVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp CCCHHHHHHHHGGGTEEEEE
T ss_pred cCCHHHHHHHHHHcCCeEEE
Confidence 135566799999997654
No 66
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=39.48 E-value=14 Score=35.27 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=45.6
Q ss_pred CccccCCccccc--cccCCcccEEEECCCCcccccccccccCCCC-CHHHHHcCChhhhccCCeEEEEecCCCcch--HH
Q psy2298 123 MFLKCDVKEFNL--KELNVKFDVIHIEPPLEEYQRTLGVTNMQGW-SWDQIMQLEIGEVAAARSFVFLWCGSSEGL--DQ 197 (366)
Q Consensus 123 ~~i~~Dl~~~~l--~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tm-s~~eI~~LPI~~L~a~~g~lFlWvTn~~~L--~~ 197 (366)
.+++.|+..+.- ...+.+||+|++|||--..+.. +. ..... .+.++... +.+++.++|++++=++.+..+ +.
T Consensus 206 ~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~-~~-~~~~~~~~~~ll~~-~~~~LkpgG~lli~~~~~~~~~~~~ 282 (332)
T 2igt_A 206 RWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTH-GE-VWQLFDHLPLMLDI-CREILSPKALGLVLTAYSIRASFYS 282 (332)
T ss_dssp EEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTT-CC-EEEHHHHHHHHHHH-HHHTBCTTCCEEEEEECCTTSCHHH
T ss_pred EEEECcHHHHHHHHHhcCCCceEEEECCccccCCch-HH-HHHHHHHHHHHHHH-HHHhcCcCcEEEEEECCCCCCCHHH
Confidence 477788766521 1114689999999994321100 00 00000 11222211 235667889877666554322 22
Q ss_pred HH----HHHHhcCcEEEeeEEEEE
Q psy2298 198 GR----NCLRKWGFRRCEDICWIR 217 (366)
Q Consensus 198 ~~----ell~~WGFr~ve~~vWvK 217 (366)
-. +.+...|+++...-+.+.
T Consensus 283 ~~~~l~~a~~~~g~~v~~~e~~~p 306 (332)
T 2igt_A 283 MHELMRETMRGAGGVVASGELVIR 306 (332)
T ss_dssp HHHHHHHHTTTSCSEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEEecc
Confidence 22 344578988764333344
No 67
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=39.47 E-value=88 Score=25.99 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=35.9
Q ss_pred HHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEe
Q psy2298 112 DDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLW 188 (366)
Q Consensus 112 ~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlW 188 (366)
.+.+......+ .++.+|+..+.+. ...||+|++......- -....+.+ -+.+++.++|.+++-
T Consensus 83 ~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~-----------~~~~~~l~-~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 83 LKNIADANLNDRIQIVQGDVHNIPIE--DNYADLIVSRGSVFFW-----------EDVATAFR-EIYRILKSGGKTYIG 147 (219)
T ss_dssp HHHHHHTTCTTTEEEEECBTTBCSSC--TTCEEEEEEESCGGGC-----------SCHHHHHH-HHHHHEEEEEEEEEE
T ss_pred HHHHHhccccCceEEEEcCHHHCCCC--cccccEEEECchHhhc-----------cCHHHHHH-HHHHhCCCCCEEEEE
Confidence 34444444443 3788888776543 4689999997554321 11122211 134566788888775
No 68
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=37.36 E-value=67 Score=28.83 Aligned_cols=88 Identities=10% Similarity=-0.041 Sum_probs=51.9
Q ss_pred HHHHHhhCCC-CCccccCCcccccc-ccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEec
Q psy2298 112 DDLIAETATP-PMFLKCDVKEFNLK-ELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWC 189 (366)
Q Consensus 112 ~~~i~~~a~p-p~~i~~Dl~~~~l~-~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWv 189 (366)
.+.+...... -.++++|+..+... .....||+|++. . ...++.+... +..++.++|.++++.
T Consensus 121 ~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~----------a-----~~~~~~ll~~-~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 121 ERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR----------A-----VAPLCVLSEL-LLPFLEVGGAAVAMK 184 (249)
T ss_dssp HHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE----------S-----SCCHHHHHHH-HGGGEEEEEEEEEEE
T ss_pred HHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC----------C-----cCCHHHHHHH-HHHHcCCCeEEEEEe
Confidence 3344444443 23677787766432 234689999983 1 1234444443 345666899888887
Q ss_pred CCCc--chHHHHHHHHhcCcEEEeeEEE
Q psy2298 190 GSSE--GLDQGRNCLRKWGFRRCEDICW 215 (366)
Q Consensus 190 Tn~~--~L~~~~ell~~WGFr~ve~~vW 215 (366)
.... .+......++..||+..+...+
T Consensus 185 g~~~~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 185 GPRVEEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp CSCCHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 6531 1334556778889988775544
No 69
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=36.49 E-value=87 Score=26.74 Aligned_cols=49 Identities=6% Similarity=0.186 Sum_probs=30.0
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHH-cC-ChhhhccCCeEEEE
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIM-QL-EIGEVAAARSFVFL 187 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~-~L-PI~~L~a~~g~lFl 187 (366)
++.+|+..+.+. ..||+|++...... +..++.. .| -+.+++.++|.+++
T Consensus 96 ~~~~d~~~~~~~---~~fD~v~~~~~l~~------------~~~~~~~~~l~~~~~~LkpgG~l~~ 146 (234)
T 3dtn_A 96 YIEADYSKYDFE---EKYDMVVSALSIHH------------LEDEDKKELYKRSYSILKESGIFIN 146 (234)
T ss_dssp EEESCTTTCCCC---SCEEEEEEESCGGG------------SCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeCchhccCCC---CCceEEEEeCcccc------------CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 778888777655 69999999754432 2333221 11 24456667887766
No 70
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=35.73 E-value=24 Score=30.30 Aligned_cols=56 Identities=9% Similarity=0.300 Sum_probs=31.2
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
++++|+..+. ......||+|++|||+.. + .+. -.+..|.. ..++.++|++++-+..
T Consensus 107 ~~~~D~~~~~-~~~~~~fD~V~~~~p~~~-----~--~~~-~~l~~l~~---~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 107 VVNSNAMSFL-AQKGTPHNIVFVDPPFRR-----G--LLE-ETINLLED---NGWLADEALIYVESEV 162 (202)
T ss_dssp EECSCHHHHH-SSCCCCEEEEEECCSSST-----T--THH-HHHHHHHH---TTCEEEEEEEEEEEEG
T ss_pred EEECCHHHHH-hhcCCCCCEEEECCCCCC-----C--cHH-HHHHHHHh---cCccCCCcEEEEEECC
Confidence 6777766531 223468999999999531 1 000 01222322 2346678877766554
No 71
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=35.57 E-value=16 Score=35.57 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=17.7
Q ss_pred ccccCCccccccccCCcccEEEECCCCcc
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
|.++|+..+.. ...||+|++|||+-.
T Consensus 288 ~~~~D~~~l~~---~~~~D~Iv~NPPyg~ 313 (385)
T 3ldu_A 288 FNVGDATQFKS---EDEFGFIITNPPYGE 313 (385)
T ss_dssp EEECCGGGCCC---SCBSCEEEECCCCCC
T ss_pred EEECChhhcCc---CCCCcEEEECCCCcC
Confidence 45555554432 258999999999853
No 72
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=35.01 E-value=20 Score=33.55 Aligned_cols=59 Identities=12% Similarity=-0.004 Sum_probs=31.1
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
++..|...+ +.....+||||++|++=.... .....+.+-+.. +.+++.++|++.+++++
T Consensus 142 ~~~~D~~~~-l~~~~~~fDvIi~D~~~p~~~------~~~l~~~~f~~~--~~~~LkpgG~lv~~~~s 200 (294)
T 3adn_A 142 LVIDDGVNF-VNQTSQTFDVIISDCTDPIGP------GESLFTSAFYEG--CKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EECSCSCC----CCCCCEEEEEECC----------------CCHHHHHH--HHHTEEEEEEEEEEEEE
T ss_pred EEEChHHHH-HhhcCCCccEEEECCCCccCc------chhccHHHHHHH--HHHhcCCCCEEEEecCC
Confidence 566676555 222356899999998743211 011123333322 35667799999998764
No 73
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=34.76 E-value=21 Score=35.00 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHhhCCCCCccccCCccccccccCCcccEEEECCCCc
Q psy2298 113 DLIAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 113 ~~i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
+.++.......+.++|+..+ +..+...||+|++|||.-
T Consensus 254 ~n~~~ng~~~~~~~~D~~~~-l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 254 QAALRLGLRVDIRHGEALPT-LRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp HHHHHHTCCCEEEESCHHHH-HHTCCCCEEEEEECCCCC
T ss_pred HHHHHhCCCCcEEEccHHHH-HHHhcCCCCEEEECCCcC
Confidence 33444444445666676554 222233499999999964
No 74
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=34.74 E-value=87 Score=27.00 Aligned_cols=83 Identities=7% Similarity=0.095 Sum_probs=46.9
Q ss_pred CccccCCccccccccCCcccEEEEC--CCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHH
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIE--PPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRN 200 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliD--PPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~e 200 (366)
.++.+|+..+.-.--...||+|++. .||....... ..+....+.+. +..++.++|.+++-+.+....+...+
T Consensus 91 ~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~-----~rl~~~~~l~~-~~~~LkpgG~l~~~td~~~~~~~~~~ 164 (213)
T 2fca_A 91 KLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEK-----RRLTYSHFLKK-YEEVMGKGGSIHFKTDNRGLFEYSLK 164 (213)
T ss_dssp EEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGG-----GSTTSHHHHHH-HHHHHTTSCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccc-----cccCcHHHHHH-HHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence 3788888765300113579999886 3575321110 11222222221 34556789999888766333456677
Q ss_pred HHHhcCcEEEe
Q psy2298 201 CLRKWGFRRCE 211 (366)
Q Consensus 201 ll~~WGFr~ve 211 (366)
+|..-||+.++
T Consensus 165 ~~~~~g~~~~~ 175 (213)
T 2fca_A 165 SFSEYGLLLTY 175 (213)
T ss_dssp HHHHHTCEEEE
T ss_pred HHHHCCCcccc
Confidence 88887886543
No 75
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=34.59 E-value=32 Score=32.85 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=52.4
Q ss_pred ccccCCccccccccC-CcccEEEECCCCcccccc---ccccc-CCCCCHHHHHcCChhhhcc-CCeEEE--EecC-CCcc
Q psy2298 124 FLKCDVKEFNLKELN-VKFDVIHIEPPLEEYQRT---LGVTN-MQGWSWDQIMQLEIGEVAA-ARSFVF--LWCG-SSEG 194 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~-~kFDVIliDPPW~~~s~~---~G~~~-Y~tms~~eI~~LPI~~L~a-~~g~lF--lWvT-n~~~ 194 (366)
+++.||..++...+. ..+|||+++||-+-.|.. +|... -..+-++-+.-+ ..+.. +.-||+ +-.- ++..
T Consensus 51 ~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i--~~~~~~P~~~~~ENV~~l~~~~~ 128 (343)
T 1g55_A 51 LLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDIL--PRLQKLPKYILLENVKGFEVSST 128 (343)
T ss_dssp EECSCGGGCCHHHHHHHCCSEEEECCC------------------CHHHHHHHHG--GGCSSCCSEEEEEEETTGGGSHH
T ss_pred cccCCHHHccHhHcCcCCcCEEEEcCCCcchhhcCCcCCccCccchHHHHHHHHH--HHhcCCCCEEEEeCCccccCHHH
Confidence 578899888643332 279999999998865531 12100 001111111111 11111 333333 2221 1233
Q ss_pred hHHHHHHHHhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCC
Q psy2298 195 LDQGRNCLRKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGT 249 (366)
Q Consensus 195 L~~~~ell~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~ 249 (366)
++...+.|+..||.. .|.-++... +| .=++-.-..+||.+..
T Consensus 129 ~~~i~~~l~~~GY~v----~~~vl~a~~------~G---vPQ~R~R~~iv~~~~~ 170 (343)
T 1g55_A 129 RDLLIQTIENCGFQY----QEFLLSPTS------LG---IPNSRLRYFLIAKLQS 170 (343)
T ss_dssp HHHHHHHHHHTTEEE----EEEEECGGG------GT---CSCCCCEEEEEEEESS
T ss_pred HHHHHHHHHHCCCee----EEEEEEHHH------CC---CCCcccEEEEEEEeCC
Confidence 556667889999964 455566431 11 2245567788898854
No 76
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=34.53 E-value=2e+02 Score=23.94 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=40.8
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
++..|+... +..+ ..||+|+++++.. ....+.+ -+.+++.++|.+++-+......+...+.++
T Consensus 94 ~~~~d~~~~-~~~~-~~~D~i~~~~~~~--------------~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~ 156 (204)
T 3e05_A 94 LVEAFAPEG-LDDL-PDPDRVFIGGSGG--------------MLEEIID-AVDRRLKSEGVIVLNAVTLDTLTKAVEFLE 156 (204)
T ss_dssp EEECCTTTT-CTTS-CCCSEEEESCCTT--------------CHHHHHH-HHHHHCCTTCEEEEEECBHHHHHHHHHHHH
T ss_pred EEeCChhhh-hhcC-CCCCEEEECCCCc--------------CHHHHHH-HHHHhcCCCeEEEEEecccccHHHHHHHHH
Confidence 566666433 1122 5799999987642 2222222 133456788988876554334566778899
Q ss_pred hcCc
Q psy2298 204 KWGF 207 (366)
Q Consensus 204 ~WGF 207 (366)
+.||
T Consensus 157 ~~g~ 160 (204)
T 3e05_A 157 DHGY 160 (204)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 9999
No 77
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=34.27 E-value=1e+02 Score=26.35 Aligned_cols=80 Identities=11% Similarity=-0.061 Sum_probs=47.3
Q ss_pred HHHHhhCCC--CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecC
Q psy2298 113 DLIAETATP--PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCG 190 (366)
Q Consensus 113 ~~i~~~a~p--p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvT 190 (366)
+.++....+ -.++..|+... +..+ ..||+|++++.. ..+ +.+ -+.+++.++|.+++=+.
T Consensus 95 ~~~~~~g~~~~v~~~~~d~~~~-~~~~-~~~D~v~~~~~~---------------~~~-~l~-~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 95 KNIDTYGLSPRMRAVQGTAPAA-LADL-PLPEAVFIGGGG---------------SQA-LYD-RLWEWLAPGTRIVANAV 155 (204)
T ss_dssp HHHHHTTCTTTEEEEESCTTGG-GTTS-CCCSEEEECSCC---------------CHH-HHH-HHHHHSCTTCEEEEEEC
T ss_pred HHHHHcCCCCCEEEEeCchhhh-cccC-CCCCEEEECCcc---------------cHH-HHH-HHHHhcCCCcEEEEEec
Confidence 344444444 23677787662 2222 479999997532 222 211 12345568887777666
Q ss_pred CCcchHHHHHHHHhcCcEEEe
Q psy2298 191 SSEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 191 n~~~L~~~~ell~~WGFr~ve 211 (366)
+...+....+.+++.||+.+.
T Consensus 156 ~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 156 TLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp SHHHHHHHHHHHHHHCSEEEE
T ss_pred CcccHHHHHHHHHhCCCcEEE
Confidence 534566777889999977654
No 78
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=33.49 E-value=18 Score=34.52 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=18.5
Q ss_pred ccccCCccccccccCCcccEEEECCCCcc
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~ 152 (366)
++++|+..+.. ..+||+|+++|||-.
T Consensus 85 ~~~~D~~~~~~---~~~fD~Ii~NPPy~~ 110 (421)
T 2ih2_A 85 GILADFLLWEP---GEAFDLILGNPPYGI 110 (421)
T ss_dssp EEESCGGGCCC---SSCEEEEEECCCCCC
T ss_pred EEeCChhhcCc---cCCCCEEEECcCccC
Confidence 45666655431 358999999999964
No 79
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=33.38 E-value=92 Score=26.22 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=30.3
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHH--HcCChhhhccCCeEEEEe
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQI--MQLEIGEVAAARSFVFLW 188 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI--~~LPI~~L~a~~g~lFlW 188 (366)
.++.+|+..+.+. ..||+|++.-... + +...+. .=--+.+++.++|.+++=
T Consensus 92 ~~~~~d~~~~~~~---~~fD~v~~~~~l~----------~--~~~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 92 SITEGDFLSFEVP---TSIDTIVSTYAFH----------H--LTDDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp CEESCCSSSCCCC---SCCSEEEEESCGG----------G--SCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEeCChhhcCCC---CCeEEEEECcchh----------c--CChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4788888877654 6999999963332 1 222221 111234566788877664
No 80
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=33.18 E-value=50 Score=27.99 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=43.1
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCC--cchHHHHH
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSS--EGLDQGRN 200 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~--~~L~~~~e 200 (366)
.++.+|+..+.+. ...||+|++.... |. .....+.+ -+.+++.++|.+++-.... ...+...+
T Consensus 100 ~~~~~d~~~~~~~--~~~fD~v~~~~~l----------~~--~~~~~~l~-~~~~~L~~gG~l~i~~~~~~~~~~~~~~~ 164 (215)
T 2zfu_A 100 RVTVCDMAQVPLE--DESVDVAVFCLSL----------MG--TNIRDFLE-EANRVLKPGGLLKVAEVSSRFEDVRTFLR 164 (215)
T ss_dssp TEEESCTTSCSCC--TTCEEEEEEESCC----------CS--SCHHHHHH-HHHHHEEEEEEEEEEECGGGCSCHHHHHH
T ss_pred eEEEeccccCCCC--CCCEeEEEEehhc----------cc--cCHHHHHH-HHHHhCCCCeEEEEEEcCCCCCCHHHHHH
Confidence 4566776665432 4589999985443 21 12222211 2345667888777633321 12456677
Q ss_pred HHHhcCcEEEe
Q psy2298 201 CLRKWGFRRCE 211 (366)
Q Consensus 201 ll~~WGFr~ve 211 (366)
+|+.-||+.++
T Consensus 165 ~l~~~Gf~~~~ 175 (215)
T 2zfu_A 165 AVTKLGFKIVS 175 (215)
T ss_dssp HHHHTTEEEEE
T ss_pred HHHHCCCEEEE
Confidence 89999998765
No 81
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=32.53 E-value=96 Score=27.90 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=16.4
Q ss_pred CccccCCccccccccCCcccEEEE
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHI 146 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIli 146 (366)
.|+.+|+..+.+ ...||+|++
T Consensus 136 ~~~~~d~~~~~~---~~~fD~v~~ 156 (299)
T 3g2m_A 136 TLVQGDMSAFAL---DKRFGTVVI 156 (299)
T ss_dssp EEEECBTTBCCC---SCCEEEEEE
T ss_pred EEEeCchhcCCc---CCCcCEEEE
Confidence 478889888765 468998886
No 82
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=32.26 E-value=40 Score=30.13 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=22.9
Q ss_pred HHhhCCCCCccccCCccccccccCCcccEEEECCCCc
Q psy2298 115 IAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 115 i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
+......-.++.+|+..+.+ ...||+|++.....
T Consensus 162 ~~~~~~~~~~~~~d~~~~~~---~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 162 KEKENLNISTALYDINAANI---QENYDFIVSTVVFM 195 (286)
T ss_dssp HHHTTCCEEEEECCGGGCCC---CSCEEEEEECSSGG
T ss_pred HHHcCCceEEEEeccccccc---cCCccEEEEccchh
Confidence 33333334477888877655 57999999987654
No 83
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=32.02 E-value=40 Score=31.76 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=22.9
Q ss_pred HHHHhhCCCC-CccccCCcccccccc-CCcccEEEECCCCc
Q psy2298 113 DLIAETATPP-MFLKCDVKEFNLKEL-NVKFDVIHIEPPLE 151 (366)
Q Consensus 113 ~~i~~~a~pp-~~i~~Dl~~~~l~~l-~~kFDVIliDPPW~ 151 (366)
+.+++....- .++..|...+..... ..+||+|++|||-.
T Consensus 145 ~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcS 185 (309)
T 2b9e_A 145 TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCS 185 (309)
T ss_dssp HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCC
T ss_pred HHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCCcC
Confidence 3444444432 356777666542211 14799999999964
No 84
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=31.95 E-value=88 Score=26.73 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=17.6
Q ss_pred ccccCCcccccc-----ccC----CcccEEEECCCC
Q psy2298 124 FLKCDVKEFNLK-----ELN----VKFDVIHIEPPL 150 (366)
Q Consensus 124 ~i~~Dl~~~~l~-----~l~----~kFDVIliDPPW 150 (366)
+++.|+...... .++ .+||+|+.|++-
T Consensus 66 ~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~ 101 (191)
T 3dou_A 66 FIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMA 101 (191)
T ss_dssp EEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCC
T ss_pred EEEccccCHHHHHHHHHHhhcccCCcceEEecCCCc
Confidence 677777665421 111 389999999864
No 85
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=31.72 E-value=1.4e+02 Score=25.26 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.5
Q ss_pred CCCccccCCccccccccCCcccEEEECC
Q psy2298 121 PPMFLKCDVKEFNLKELNVKFDVIHIEP 148 (366)
Q Consensus 121 pp~~i~~Dl~~~~l~~l~~kFDVIliDP 148 (366)
.-.++.+|+..+.+. ..||+|++..
T Consensus 85 ~~~~~~~d~~~~~~~---~~fD~v~~~~ 109 (246)
T 1y8c_A 85 KPRLACQDISNLNIN---RKFDLITCCL 109 (246)
T ss_dssp CCEEECCCGGGCCCS---CCEEEEEECT
T ss_pred CeEEEecccccCCcc---CCceEEEEcC
Confidence 344788888776644 6899999975
No 86
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=31.17 E-value=20 Score=31.78 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=35.9
Q ss_pred CCCC-ccccCCcccccc---ccCCcccEEEECCCCcccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEEecCCC
Q psy2298 120 TPPM-FLKCDVKEFNLK---ELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFLWCGSS 192 (366)
Q Consensus 120 ~pp~-~i~~Dl~~~~l~---~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWvTn~ 192 (366)
.+|. |+++|+...... ..+.+||+|+.+||+-..... .+ .-..+.+.++ -+.+++.++|.+++ +.++
T Consensus 144 ~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~---~~--~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~ 216 (250)
T 1o9g_A 144 ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHW---EG--QVPGQPVAGLLRSLASALPAHAVIAV-TDRS 216 (250)
T ss_dssp SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSS---SS--CCCHHHHHHHHHHHHHHSCTTCEEEE-EESS
T ss_pred ccccceeecccccccccccccCCCCceEEEeCCCeeccccc---cc--cccccHHHHHHHHHHHhcCCCcEEEE-eCcc
Confidence 3444 788887653210 023489999999998642210 00 0011221111 13456678998888 6554
No 87
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=30.73 E-value=60 Score=28.36 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHHHhhCCCC--CccccCCcccccc-ccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEE
Q psy2298 112 DDLIAETATPP--MFLKCDVKEFNLK-ELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFL 187 (366)
Q Consensus 112 ~~~i~~~a~pp--~~i~~Dl~~~~l~-~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFl 187 (366)
.+.+.....++ .++..|...+ +. .+...||+|++|+++.. +..+.+. +.+++.++|++++
T Consensus 112 ~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~fD~V~~~~~~~~--------------~~~~l~~-~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 112 KQNLATYHFENQVRIIEGNALEQ-FENVNDKVYDMIFIDAAKAQ--------------SKKFFEI-YTPLLKHQGLVIT 174 (232)
T ss_dssp HHHHHHTTCTTTEEEEESCGGGC-HHHHTTSCEEEEEEETTSSS--------------HHHHHHH-HGGGEEEEEEEEE
T ss_pred HHHHHHcCCCCcEEEEECCHHHH-HHhhccCCccEEEEcCcHHH--------------HHHHHHH-HHHhcCCCeEEEE
Confidence 44455555543 3777887655 33 34579999999977542 1222111 1255668898877
No 88
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=30.34 E-value=45 Score=29.61 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=17.6
Q ss_pred CccccCCccccccccCCcccEEEECC
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEP 148 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDP 148 (366)
.++.+|+..+.+. ....||+|++.-
T Consensus 117 ~~~~~d~~~~~~~-~~~~fD~v~~~~ 141 (298)
T 1ri5_A 117 FFRAQDSYGRHMD-LGKEFDVISSQF 141 (298)
T ss_dssp EEEESCTTTSCCC-CSSCEEEEEEES
T ss_pred EEEECCccccccC-CCCCcCEEEECc
Confidence 3678888776542 246899999963
No 89
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=30.31 E-value=1.2e+02 Score=25.42 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=18.0
Q ss_pred ccccCCccccccccCCcccEEEECCCCc
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
++.+|+..+.+. ...||+|++.....
T Consensus 87 ~~~~d~~~~~~~--~~~~D~v~~~~~l~ 112 (235)
T 3sm3_A 87 FKVENASSLSFH--DSSFDFAVMQAFLT 112 (235)
T ss_dssp EEECCTTSCCSC--TTCEEEEEEESCGG
T ss_pred EEEecccccCCC--CCceeEEEEcchhh
Confidence 667777766533 46899999975543
No 90
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=30.09 E-value=1e+02 Score=25.59 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=10.5
Q ss_pred CcccEEEECCCCc
Q psy2298 139 VKFDVIHIEPPLE 151 (366)
Q Consensus 139 ~kFDVIliDPPW~ 151 (366)
..||+|++|+...
T Consensus 105 ~~fD~v~~~~~~~ 117 (201)
T 2plw_A 105 KKIDIILSDAAVP 117 (201)
T ss_dssp CCEEEEEECCCCC
T ss_pred CcccEEEeCCCcC
Confidence 5899999997643
No 91
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=29.80 E-value=22 Score=34.09 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=19.6
Q ss_pred CccccCCcccc--ccccCCcccEEEECCCCc
Q psy2298 123 MFLKCDVKEFN--LKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 123 ~~i~~Dl~~~~--l~~l~~kFDVIliDPPW~ 151 (366)
.|+.+|+..+. +...+.+||+|++|||..
T Consensus 260 ~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~ 290 (382)
T 1wxx_A 260 RVLEANAFDLLRRLEKEGERFDLVVLDPPAF 290 (382)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred eEEECCHHHHHHHHHhcCCCeeEEEECCCCC
Confidence 36777766542 111256899999999964
No 92
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=28.75 E-value=41 Score=31.95 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=33.9
Q ss_pred cccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 125 LKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 125 i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
+..|-..| +.....+||||++|.+=.. |. .....+.+=+.. +.+.+.++|++..|+++
T Consensus 143 ~~~Dg~~~-l~~~~~~yDvIi~D~~dp~-----~~-~~~L~t~eFy~~--~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 143 VIDDGVNF-VNQTSQTFDVIISDCTDPI-----GP-GESLFTSAFYEG--CKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EESCTTTT-TSCSSCCEEEEEESCCCCC-----CT-TCCSSCCHHHHH--HHHTEEEEEEEEEEEEE
T ss_pred EechHHHH-HhhccccCCEEEEeCCCcC-----CC-chhhcCHHHHHH--HHHHhCCCCEEEEecCC
Confidence 44455544 3444579999999975221 11 112223222222 34566799999999987
No 93
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=28.21 E-value=29 Score=32.19 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=31.5
Q ss_pred ccccCCccccccccCCcccEEEECCCCc-ccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLE-EYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~-~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
++..|...+ +.....+||+|++|+|-. . |. .....+.+-+.. +.+++.++|++.+++.+
T Consensus 148 ~~~~D~~~~-l~~~~~~fD~Ii~d~~~~~~-----~~-~~~l~~~~~l~~--~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 148 IVIANGAEY-VRKFKNEFDVIIIDSTDPTA-----GQ-GGHLFTEEFYQA--CYDALKEDGVFSAETED 207 (296)
T ss_dssp EEESCHHHH-GGGCSSCEEEEEEEC----------------CCSHHHHHH--HHHHEEEEEEEEEECCC
T ss_pred EEECcHHHH-HhhCCCCceEEEEcCCCccc-----Cc-hhhhhHHHHHHH--HHHhcCCCcEEEEEccC
Confidence 556665443 222346899999998632 1 10 001112222222 34667799999999876
No 94
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=27.66 E-value=59 Score=29.09 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=36.1
Q ss_pred CCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEEe
Q psy2298 138 NVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 138 ~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~ve 211 (366)
..+||+|+++++... ...+.. .+.+++.++|.+++=.......+...+++++.||+.++
T Consensus 182 ~~~fD~Vv~n~~~~~--------------~~~~l~-~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 182 FGPFDLLVANLYAEL--------------HAALAP-RYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp GCCEEEEEEECCHHH--------------HHHHHH-HHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCCEEEECCcHHH--------------HHHHHH-HHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEE
Confidence 358999999865321 111111 13455668887776322223456777899999998765
No 95
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=27.33 E-value=2.3e+02 Score=24.53 Aligned_cols=33 Identities=9% Similarity=0.346 Sum_probs=20.2
Q ss_pred HHHHhhCCC-CCccccCCccccccccCCcccEEEEC
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIE 147 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~~kFDVIliD 147 (366)
+.+.....+ -.|+.+|+..+.+. ...||+|++.
T Consensus 77 ~~~~~~~~~~v~~~~~d~~~l~~~--~~~fD~V~~~ 110 (260)
T 1vl5_A 77 AFIEGNGHQQVEYVQGDAEQMPFT--DERFHIVTCR 110 (260)
T ss_dssp HHHHHTTCCSEEEEECCC-CCCSC--TTCEEEEEEE
T ss_pred HHHHhcCCCceEEEEecHHhCCCC--CCCEEEEEEh
Confidence 334444433 23788888776543 4689999985
No 96
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=26.99 E-value=1e+02 Score=28.53 Aligned_cols=68 Identities=7% Similarity=0.042 Sum_probs=35.0
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHH
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLR 203 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~ 203 (366)
++..|+..+...-....||+|++|+|=. ...++++ .+++.++|.+++.+.+...+....+.|.
T Consensus 171 ~~~~d~~~~~~~~~~~~fD~V~~~~~~~------------~~~l~~~-----~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 233 (336)
T 2b25_A 171 FIHKDISGATEDIKSLTFDAVALDMLNP------------HVTLPVF-----YPHLKHGGVCAVYVVNITQVIELLDGIR 233 (336)
T ss_dssp EEESCTTCCC-------EEEEEECSSST------------TTTHHHH-----GGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEECChHHcccccCCCCeeEEEECCCCH------------HHHHHHH-----HHhcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 5666766542111134799999987621 0123333 2445688888877765333444445555
Q ss_pred --hcCcE
Q psy2298 204 --KWGFR 208 (366)
Q Consensus 204 --~WGFr 208 (366)
.++|.
T Consensus 234 ~~~~~~~ 240 (336)
T 2b25_A 234 TCELALS 240 (336)
T ss_dssp HHTCCEE
T ss_pred hcCCCcc
Confidence 35554
No 97
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=26.94 E-value=2.1e+02 Score=23.75 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=39.6
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHH
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCL 202 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell 202 (366)
.++.+|+..+. ....||+|++..- -.+..+.+. +.+++.++|.+++..... ..+...+++
T Consensus 118 ~~~~~d~~~~~---~~~~~D~i~~~~~---------------~~~~~~l~~-~~~~L~~gG~l~~~~~~~-~~~~~~~~~ 177 (207)
T 1jsx_A 118 EPVQSRVEEFP---SEPPFDGVISRAF---------------ASLNDMVSW-CHHLPGEQGRFYALKGQM-PEDEIALLP 177 (207)
T ss_dssp EEEECCTTTSC---CCSCEEEEECSCS---------------SSHHHHHHH-HTTSEEEEEEEEEEESSC-CHHHHHTSC
T ss_pred EEEecchhhCC---ccCCcCEEEEecc---------------CCHHHHHHH-HHHhcCCCcEEEEEeCCC-chHHHHHHh
Confidence 36777776653 1358999998521 112222211 234566889888877653 344444555
Q ss_pred HhcCcEEEeeE
Q psy2298 203 RKWGFRRCEDI 213 (366)
Q Consensus 203 ~~WGFr~ve~~ 213 (366)
. ||+.+...
T Consensus 178 ~--g~~~~~~~ 186 (207)
T 1jsx_A 178 E--EYQVESVV 186 (207)
T ss_dssp T--TEEEEEEE
T ss_pred c--CCceeeee
Confidence 5 88776543
No 98
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=25.88 E-value=91 Score=26.94 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=43.0
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEEec----------CC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFLWC----------GS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWv----------Tn 191 (366)
++.+|+..+.+. ...||+|+++-.. ++ +..+++.++ -+.+++.++|.+++-. ..
T Consensus 132 ~~~~d~~~~~~~--~~~fD~v~~~~~l----------~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 197 (241)
T 2ex4_A 132 YFCCGLQDFTPE--PDSYDVIWIQWVI----------GH--LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDV 197 (241)
T ss_dssp EEECCGGGCCCC--SSCEEEEEEESCG----------GG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETT
T ss_pred EEEcChhhcCCC--CCCEEEEEEcchh----------hh--CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceeccc
Confidence 677777666533 3589999996322 11 232222111 2345666888777611 11
Q ss_pred Cc----chHHHHHHHHhcCcEEEeeE
Q psy2298 192 SE----GLDQGRNCLRKWGFRRCEDI 213 (366)
Q Consensus 192 ~~----~L~~~~ell~~WGFr~ve~~ 213 (366)
.. ..+.-.++|+.-||+.++..
T Consensus 198 ~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 198 DSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp TTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred CCcccCCHHHHHHHHHHcCCeEEEee
Confidence 10 24556678999999877543
No 99
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=25.74 E-value=2.1e+02 Score=24.62 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=16.1
Q ss_pred ccccCCccccccccCCcccEEEEC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIE 147 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliD 147 (366)
++.+|+..+.+. ...||+|++.
T Consensus 73 ~~~~d~~~~~~~--~~~fD~v~~~ 94 (239)
T 1xxl_A 73 FQQGTAESLPFP--DDSFDIITCR 94 (239)
T ss_dssp EEECBTTBCCSC--TTCEEEEEEE
T ss_pred EEecccccCCCC--CCcEEEEEEC
Confidence 677787765433 4689999985
No 100
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=25.56 E-value=39 Score=32.94 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=22.4
Q ss_pred HHhhCCCCCccccCCccccccccCCcccEEEECCCCc
Q psy2298 115 IAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 115 i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
+......-.++..|...+.-..-+.+||+|++|||..
T Consensus 290 ~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 326 (429)
T 1sqg_A 290 LKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCS 326 (429)
T ss_dssp HHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCC
T ss_pred HHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCC
Confidence 3333333346667766653101135899999999975
No 101
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=25.54 E-value=26 Score=32.07 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=18.4
Q ss_pred ccccCCcccc--ccccCCcccEEEECCCCcc
Q psy2298 124 FLKCDVKEFN--LKELNVKFDVIHIEPPLEE 152 (366)
Q Consensus 124 ~i~~Dl~~~~--l~~l~~kFDVIliDPPW~~ 152 (366)
+++.|...+- +...+..||+|++||||..
T Consensus 143 ~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 143 LHFGNAAEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp EEESCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred EEECCHHHHHHhhhccCCCccEEEECCCCCC
Confidence 6777776541 2211158999999999964
No 102
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=25.48 E-value=1.4e+02 Score=24.92 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=17.8
Q ss_pred CccccCCccccccccCCcccEEEECC
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEP 148 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDP 148 (366)
.++.+|+..+.+......||+|++.-
T Consensus 76 ~~~~~d~~~~~~~~~~~~fD~v~~~~ 101 (230)
T 3cc8_A 76 HVVLGDIETMDMPYEEEQFDCVIFGD 101 (230)
T ss_dssp EEEESCTTTCCCCSCTTCEEEEEEES
T ss_pred cEEEcchhhcCCCCCCCccCEEEECC
Confidence 46788887654333346899999853
No 103
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=25.26 E-value=79 Score=26.79 Aligned_cols=22 Identities=5% Similarity=0.110 Sum_probs=15.3
Q ss_pred ccccCCccccccccCCcccEEEEC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIE 147 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliD 147 (366)
++.+|+...++. ..+||+|++.
T Consensus 88 ~~~~d~~~~~~~--~~~fD~V~~~ 109 (219)
T 3jwg_A 88 LFQSSLVYRDKR--FSGYDAATVI 109 (219)
T ss_dssp EEECCSSSCCGG--GTTCSEEEEE
T ss_pred EEeCcccccccc--cCCCCEEEEH
Confidence 677787554432 3689999984
No 104
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=25.15 E-value=27 Score=33.02 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=32.1
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSS 192 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~ 192 (366)
++..|...+ +.....+||+|++|++-.. +.. ....+.+-+.. +.+++.++|++.+++.+.
T Consensus 174 ~~~~D~~~~-l~~~~~~fDvIi~d~~~p~-----~~~-~~l~~~~~l~~--~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 174 VFIEDASKF-LENVTNTYDVIIVDSSDPI-----GPA-ETLFNQNFYEK--IYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EEESCHHHH-HHHCCSCEEEEEEECCCSS-----SGG-GGGSSHHHHHH--HHHHEEEEEEEEEEECCT
T ss_pred EEEccHHHH-HhhcCCCceEEEECCcCCC-----Ccc-hhhhHHHHHHH--HHHhcCCCcEEEEEcCCc
Confidence 445554432 1223468999999984211 100 00112222222 346677999999998763
No 105
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=25.11 E-value=1.9e+02 Score=26.10 Aligned_cols=87 Identities=5% Similarity=-0.099 Sum_probs=47.3
Q ss_pred HHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEec-
Q psy2298 113 DLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWC- 189 (366)
Q Consensus 113 ~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWv- 189 (366)
+.+.....++ .|+.+|+..+.+. ...||+|++.- ..++ +....+.+ -+.+++.++|.+++-.
T Consensus 158 ~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~~----------~l~~--~~~~~~l~-~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 158 RRARELRIDDHVRSRVCNMLDTPFD--KGAVTASWNNE----------STMY--VDLHDLFS-EHSRFLKVGGRYVTITG 222 (312)
T ss_dssp HHHHHTTCTTTEEEEECCTTSCCCC--TTCEEEEEEES----------CGGG--SCHHHHHH-HHHHHEEEEEEEEEEEE
T ss_pred HHHHHcCCCCceEEEECChhcCCCC--CCCEeEEEECC----------chhh--CCHHHHHH-HHHHHcCCCcEEEEEEc
Confidence 3344444443 3788888766533 46999999831 1222 22333322 2345666888666543
Q ss_pred -CCCc--------------------chHHHHHHHHhcCcEEEeeEE
Q psy2298 190 -GSSE--------------------GLDQGRNCLRKWGFRRCEDIC 214 (366)
Q Consensus 190 -Tn~~--------------------~L~~~~ell~~WGFr~ve~~v 214 (366)
.... ..+.-.++|++-||+.++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 223 CWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp EECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred cccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 2210 112335678888998776544
No 106
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=25.06 E-value=50 Score=27.54 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=19.4
Q ss_pred ccccCCccccccccCCcccEEEECCCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPL 150 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW 150 (366)
++..|+..+. .....+||+|++|||+
T Consensus 78 ~~~~d~~~~~-~~~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 78 LIKDGHQNMD-KYIDCPVKAVMFNLGY 103 (197)
T ss_dssp EECSCGGGGG-GTCCSCEEEEEEEESB
T ss_pred EEECCHHHHh-hhccCCceEEEEcCCc
Confidence 7788876664 1234689999999987
No 107
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=24.84 E-value=92 Score=28.23 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=19.5
Q ss_pred CccccCCccccccccCCcccEEEECCCCc
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
.|+.+|+..+.+. ..||+|++..+..
T Consensus 173 ~~~~~d~~~~~~~---~~fD~v~~~~~~~ 198 (305)
T 3ocj_A 173 TLHRQDAWKLDTR---EGYDLLTSNGLNI 198 (305)
T ss_dssp EEEECCGGGCCCC---SCEEEEECCSSGG
T ss_pred EEEECchhcCCcc---CCeEEEEECChhh
Confidence 3788888877654 6999999976553
No 108
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=24.83 E-value=16 Score=35.12 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=19.5
Q ss_pred CccccCCcccc--ccccCCcccEEEECCCCc
Q psy2298 123 MFLKCDVKEFN--LKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 123 ~~i~~Dl~~~~--l~~l~~kFDVIliDPPW~ 151 (366)
.|+.+|+..+. +...+.+||+|++|||..
T Consensus 270 ~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~ 300 (396)
T 2as0_A 270 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAF 300 (396)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred eEEECCHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 36777765542 111256899999999964
No 109
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=24.61 E-value=1.2e+02 Score=27.22 Aligned_cols=76 Identities=14% Similarity=0.041 Sum_probs=42.7
Q ss_pred ccccCCccccc-cccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC-------C--c
Q psy2298 124 FLKCDVKEFNL-KELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS-------S--E 193 (366)
Q Consensus 124 ~i~~Dl~~~~l-~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn-------~--~ 193 (366)
++.+|+...+. ..+...||+|++|-+-. ...++..--+..++.++|.+.+=+-. . +
T Consensus 129 ~i~~Da~~~~~~~~~~~~~D~I~~d~a~~--------------~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e 194 (232)
T 3id6_C 129 PLLADARFPQSYKSVVENVDVLYVDIAQP--------------DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKE 194 (232)
T ss_dssp EEECCTTCGGGTTTTCCCEEEEEECCCCT--------------THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSS
T ss_pred EEEcccccchhhhccccceEEEEecCCCh--------------hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHH
Confidence 57788876542 23346899999994421 12222222234356678865554311 1 1
Q ss_pred chHHHHHHHHhcCcEEEeeE
Q psy2298 194 GLDQGRNCLRKWGFRRCEDI 213 (366)
Q Consensus 194 ~L~~~~ell~~WGFr~ve~~ 213 (366)
..+...+.|++=||+..+.+
T Consensus 195 ~~~~~~~~L~~~gf~~~~~~ 214 (232)
T 3id6_C 195 IYKTEVEKLENSNFETIQII 214 (232)
T ss_dssp STTHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 22445566777799988765
No 110
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=24.58 E-value=96 Score=27.57 Aligned_cols=83 Identities=16% Similarity=0.042 Sum_probs=46.3
Q ss_pred ccccCCcccc-ccc-cCCcccEEEECCCCcccccccccccCCCCCHHHHHc-C-ChhhhccCCeEEEEec-CCCc-----
Q psy2298 124 FLKCDVKEFN-LKE-LNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQ-L-EIGEVAAARSFVFLWC-GSSE----- 193 (366)
Q Consensus 124 ~i~~Dl~~~~-l~~-l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~-L-PI~~L~a~~g~lFlWv-Tn~~----- 193 (366)
++++|+...+ +.. ...+||+|++- ...++-..+++++.+ | -|.+++.++|.+++=. .+..
T Consensus 138 ~~~~D~~~~~~~~~~~~~~fD~V~~~----------~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g 207 (263)
T 2a14_A 138 VLKCDVHLGNPLAPAVLPLADCVLTL----------LAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG 207 (263)
T ss_dssp EEECCTTSSSTTTTCCCCCEEEEEEE----------SCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET
T ss_pred EEeccccCCCCCCccccCCCCEeeeh----------HHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeC
Confidence 6788988753 221 13489999992 222321123333322 2 2456666777554432 1100
Q ss_pred ---------chHHHHHHHHhcCcEEEeeEEEE
Q psy2298 194 ---------GLDQGRNCLRKWGFRRCEDICWI 216 (366)
Q Consensus 194 ---------~L~~~~ell~~WGFr~ve~~vWv 216 (366)
..+.-.++|.+=||+.++...|-
T Consensus 208 ~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 208 KREFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred CeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 12455678999999988877663
No 111
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=24.49 E-value=76 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=19.8
Q ss_pred CCccccCCccccccccCCcccEEEECCCCccc
Q psy2298 122 PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEY 153 (366)
Q Consensus 122 p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~ 153 (366)
+.++++|....+.. .+||+|+++||+...
T Consensus 238 ~~i~~gD~l~~~~~---~~fD~Iv~NPPf~~~ 266 (445)
T 2okc_A 238 SPIVCEDSLEKEPS---TLVDVILANPPFGTR 266 (445)
T ss_dssp CSEEECCTTTSCCS---SCEEEEEECCCSSCC
T ss_pred CCEeeCCCCCCccc---CCcCEEEECCCCCCc
Confidence 44566665544322 389999999999753
No 112
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=24.37 E-value=94 Score=26.47 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=42.2
Q ss_pred CCccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCc--------
Q psy2298 122 PMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSE-------- 193 (366)
Q Consensus 122 p~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~-------- 193 (366)
-.++.+|+..+.+. ...||+|++.-... +- -....+.+ -+.+++.++|.+++-+.+..
T Consensus 86 ~~~~~~d~~~~~~~--~~~fD~v~~~~~l~----------~~-~~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 151 (219)
T 1vlm_A 86 VFVLKGTAENLPLK--DESFDFALMVTTIC----------FV-DDPERALK-EAYRILKKGGYLIVGIVDRESFLGREYE 151 (219)
T ss_dssp CEEEECBTTBCCSC--TTCEEEEEEESCGG----------GS-SCHHHHHH-HHHHHEEEEEEEEEEEECSSSHHHHHHH
T ss_pred CEEEEcccccCCCC--CCCeeEEEEcchHh----------hc-cCHHHHHH-HHHHHcCCCcEEEEEEeCCccHHHHHHH
Confidence 34677887766532 45899999963322 11 01121111 13455667886666433211
Q ss_pred ---------------chHHHHHHHHhcCcEEEee
Q psy2298 194 ---------------GLDQGRNCLRKWGFRRCED 212 (366)
Q Consensus 194 ---------------~L~~~~ell~~WGFr~ve~ 212 (366)
..+.-.++|+.-||+.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 152 KNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp HTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 1234456888889987653
No 113
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=24.35 E-value=66 Score=31.60 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=23.1
Q ss_pred HHHHhhCCC-CCccccCCccccccccC-CcccEEEECCCCc
Q psy2298 113 DLIAETATP-PMFLKCDVKEFNLKELN-VKFDVIHIEPPLE 151 (366)
Q Consensus 113 ~~i~~~a~p-p~~i~~Dl~~~~l~~l~-~kFDVIliDPPW~ 151 (366)
+.+.....+ -.++.+|...+.- .+. ..||+|++|||-.
T Consensus 302 ~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcs 341 (450)
T 2yxl_A 302 DFVKRMGIKIVKPLVKDARKAPE-IIGEEVADKVLLDAPCT 341 (450)
T ss_dssp HHHHHTTCCSEEEECSCTTCCSS-SSCSSCEEEEEEECCCC
T ss_pred HHHHHcCCCcEEEEEcChhhcch-hhccCCCCEEEEcCCCC
Confidence 334444443 2366777766541 122 5799999999974
No 114
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=24.33 E-value=42 Score=32.01 Aligned_cols=12 Identities=25% Similarity=0.730 Sum_probs=10.7
Q ss_pred cccEEEECCCCc
Q psy2298 140 KFDVIHIEPPLE 151 (366)
Q Consensus 140 kFDVIliDPPW~ 151 (366)
.||+|++|||..
T Consensus 295 ~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 295 QCETIFVDPPRS 306 (369)
T ss_dssp CEEEEEECCCTT
T ss_pred CCCEEEECcCcc
Confidence 799999999963
No 115
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=24.10 E-value=89 Score=26.47 Aligned_cols=22 Identities=5% Similarity=0.099 Sum_probs=15.3
Q ss_pred ccccCCccccccccCCcccEEEEC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIE 147 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliD 147 (366)
++.+|+...+.. ...||+|++.
T Consensus 88 ~~~~d~~~~~~~--~~~fD~v~~~ 109 (217)
T 3jwh_A 88 LIQGALTYQDKR--FHGYDAATVI 109 (217)
T ss_dssp EEECCTTSCCGG--GCSCSEEEEE
T ss_pred EEeCCccccccc--CCCcCEEeeH
Confidence 677787554432 3689999985
No 116
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=24.03 E-value=81 Score=25.89 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.5
Q ss_pred CccccCCccccccccCCcccEEEECCCC
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPL 150 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW 150 (366)
.++.+|+..+.+ ...||+|++....
T Consensus 83 ~~~~~d~~~~~~---~~~~D~v~~~~~l 107 (199)
T 2xvm_A 83 HTRVVDLNNLTF---DRQYDFILSTVVL 107 (199)
T ss_dssp EEEECCGGGCCC---CCCEEEEEEESCG
T ss_pred EEEEcchhhCCC---CCCceEEEEcchh
Confidence 377888877654 5689999997554
No 117
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=23.87 E-value=82 Score=28.87 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=45.6
Q ss_pred HHHhHHHHHHhhCCCC--CccccCCccccccccCCcc---cEEEECCCCccccccc-ccccCCC-C-------CHHHHHc
Q psy2298 107 LIKLKDDLIAETATPP--MFLKCDVKEFNLKELNVKF---DVIHIEPPLEEYQRTL-GVTNMQG-W-------SWDQIMQ 172 (366)
Q Consensus 107 l~~lk~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kF---DVIliDPPW~~~s~~~-G~~~Y~t-m-------s~~eI~~ 172 (366)
.++.=.+.+..+.... .|+++|+... + ..+| |+|+.|||+-...... ....|.. . .++-+..
T Consensus 158 al~~A~~n~~~~~l~~~v~~~~~D~~~~-~---~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~ 233 (284)
T 1nv8_A 158 AVEIARKNAERHGVSDRFFVRKGEFLEP-F---KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYRE 233 (284)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEESSTTGG-G---GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCceEEEECcchhh-c---ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHH
Confidence 3333344455555543 3778887653 2 2478 9999999986322100 0000100 0 0011111
Q ss_pred CChh-hhccCCeEEEEecCCCcchHHHHHHHHh
Q psy2298 173 LEIG-EVAAARSFVFLWCGSSEGLDQGRNCLRK 204 (366)
Q Consensus 173 LPI~-~L~a~~g~lFlWvTn~~~L~~~~ell~~ 204 (366)
+ - ..+.++|.+++-+... ..+...++|.+
T Consensus 234 i--~~~~l~pgG~l~~e~~~~-q~~~v~~~~~~ 263 (284)
T 1nv8_A 234 F--FGRYDTSGKIVLMEIGED-QVEELKKIVSD 263 (284)
T ss_dssp H--HHHCCCTTCEEEEECCTT-CHHHHTTTSTT
T ss_pred H--HHhcCCCCCEEEEEECch-HHHHHHHHHHh
Confidence 1 2 3345889888877763 44445555554
No 118
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=23.33 E-value=67 Score=29.69 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=16.2
Q ss_pred ccccCCccccccccCCcccEEEECCCCc
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
++.+|+..+++. .||+|++|||+.
T Consensus 94 ~~~~D~~~~~~~----~~D~Vv~n~py~ 117 (299)
T 2h1r_A 94 VYEGDAIKTVFP----KFDVCTANIPYK 117 (299)
T ss_dssp C----CCSSCCC----CCSEEEEECCGG
T ss_pred EEECchhhCCcc----cCCEEEEcCCcc
Confidence 778888777643 799999999985
No 119
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=23.12 E-value=57 Score=34.39 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCCceEEEecC
Q psy2298 283 EIFHIMEHFCLGRRRLHIFGR 303 (366)
Q Consensus 283 eiy~lIE~~~p~~rrLELFAR 303 (366)
+...++..+..+.+.|+||+=
T Consensus 529 ~~r~~l~~~~~g~~VLDlg~G 549 (703)
T 3v97_A 529 IARRMLGQMSKGKDFLNLFSY 549 (703)
T ss_dssp HHHHHHHHHCTTCEEEEESCT
T ss_pred HHHHHHHHhcCCCcEEEeeec
Confidence 456778888888899999975
No 120
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=23.12 E-value=1.1e+02 Score=25.82 Aligned_cols=57 Identities=12% Similarity=0.339 Sum_probs=32.9
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
.++.+|+..+.+. ...||+|++.++...... -....+.+ -+.+++.++|.+++-..+
T Consensus 88 ~~~~~d~~~~~~~--~~~~D~v~~~~~~~~~~~---------~~~~~~l~-~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 88 EFIVGDARKLSFE--DKTFDYVIFIDSIVHFEP---------LELNQVFK-EVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp EEEECCTTSCCSC--TTCEEEEEEESCGGGCCH---------HHHHHHHH-HHHHHEEEEEEEEEEEEC
T ss_pred eEEECchhcCCCC--CCcEEEEEEcCchHhCCH---------HHHHHHHH-HHHHHcCCCcEEEEEecC
Confidence 4788888776532 358999999877322110 01111111 234566788888776655
No 121
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=22.89 E-value=1.6e+02 Score=26.91 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=62.4
Q ss_pred hCCCCCccccCCccccccccCCcccEEEECCCCccccc---ccccccCC-CCCHHHHHcCChhhhccCCeEEEEecC---
Q psy2298 118 TATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQR---TLGVTNMQ-GWSWDQIMQLEIGEVAAARSFVFLWCG--- 190 (366)
Q Consensus 118 ~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~---~~G~~~Y~-tms~~eI~~LPI~~L~a~~g~lFlWvT--- 190 (366)
+..|...+..||..++...+. +.|||+.-||=+-.|. .+|...-. .+ +.++..+ |..+ .+. +++|==.
T Consensus 40 ~N~~~~~~~~DI~~i~~~~~~-~~D~l~ggpPCQ~fS~ag~~~g~~d~R~~L-~~~~~r~-i~~~-~Pk-~~~~ENV~gl 114 (331)
T 3ubt_Y 40 SNHSAKLIKGDISKISSDEFP-KCDGIIGGPPSQSWSEGGSLRGIDDPRGKL-FYEYIRI-LKQK-KPI-FFLAENVKGM 114 (331)
T ss_dssp HHCCSEEEESCGGGCCGGGSC-CCSEEECCCCGGGTEETTEECCTTCGGGHH-HHHHHHH-HHHH-CCS-EEEEEECCGG
T ss_pred HHCCCCcccCChhhCCHhhCC-cccEEEecCCCCCcCCCCCccCCCCchhHH-HHHHHHH-Hhcc-CCe-EEEeeeeccc
Confidence 345666788999999876665 7999999999996654 22211000 11 1122211 2222 233 3222111
Q ss_pred ----CCcchHHHHHHHHhcCcEEEeeEEEEEeCCCCCCCccccccccccccCeeEEEEEEeCC
Q psy2298 191 ----SSEGLDQGRNCLRKWGFRRCEDICWIRTNASNPGHSKNIEAKAVFQRTKEHCLMGIKGT 249 (366)
Q Consensus 191 ----n~~~L~~~~ell~~WGFr~ve~~vWvK~t~~g~~~~~~~~~g~~~r~~~E~cLmG~rG~ 249 (366)
....+....+.|+.-||.. .|.-++...=| +=++-.-..+||.+..
T Consensus 115 ~~~~~~~~~~~i~~~l~~~GY~v----~~~vlna~~yG---------vPQ~R~Rvfivg~r~~ 164 (331)
T 3ubt_Y 115 MAQRHNKAVQEFIQEFDNAGYDV----HIILLNANDYG---------VAQDRKRVFYIGFRKE 164 (331)
T ss_dssp GGCTTSHHHHHHHHHHHHHTEEE----EEEEEEGGGTT---------CSBCCEEEEEEEEEGG
T ss_pred ccccccchhhhhhhhhccCCcEE----EEEecccccCC---------CCcccceEEEEEEcCC
Confidence 1123455567788899954 56666653211 2245566778898843
No 122
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=22.85 E-value=1.2e+02 Score=25.88 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=43.0
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCc----------
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSE---------- 193 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~---------- 193 (366)
++.+|+..+.+. ...||+|++.-... +- -....+.+ -+.+++.++|.+++=+.+..
T Consensus 102 ~~~~d~~~~~~~--~~~fD~v~~~~~l~----------~~-~~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 167 (242)
T 3l8d_A 102 FIKGDLSSLPFE--NEQFEAIMAINSLE----------WT-EEPLRALN-EIKRVLKSDGYACIAILGPTAKPRENSYPR 167 (242)
T ss_dssp EEECBTTBCSSC--TTCEEEEEEESCTT----------SS-SCHHHHHH-HHHHHEEEEEEEEEEEECTTCGGGGGGGGG
T ss_pred EEEcchhcCCCC--CCCccEEEEcChHh----------hc-cCHHHHHH-HHHHHhCCCeEEEEEEcCCcchhhhhhhhh
Confidence 777787766543 46899999843322 11 11112211 23455667887766442210
Q ss_pred -----------chHHHHHHHHhcCcEEEeeE
Q psy2298 194 -----------GLDQGRNCLRKWGFRRCEDI 213 (366)
Q Consensus 194 -----------~L~~~~ell~~WGFr~ve~~ 213 (366)
..+.-.++|+.-||+.++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 168 LYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp GGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 11345678999999998743
No 123
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=22.78 E-value=31 Score=33.30 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=39.4
Q ss_pred CccccCCccc-c-ccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcch--HH-
Q psy2298 123 MFLKCDVKEF-N-LKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGL--DQ- 197 (366)
Q Consensus 123 ~~i~~Dl~~~-~-l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L--~~- 197 (366)
.|+++|+..+ . +...+.+||+|++|||....+. +......-.+.+|... +..++.++|+|++=+... .+ +.
T Consensus 266 ~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~--~~~~~~~~~~~~ll~~-~~~~L~pgG~l~~~~~~~-~~~~~~~ 341 (385)
T 2b78_A 266 QLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNK--KEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAA-NMTVSQF 341 (385)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCC-------CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCT-TSCHHHH
T ss_pred EEEECCHHHHHHHHHHhCCCccEEEECCCCCCCCh--hhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC-cCCHHHH
Confidence 3778887653 1 2222468999999999842110 1000000011222222 235566888776655442 22 22
Q ss_pred ---HHHHHHhcCcE
Q psy2298 198 ---GRNCLRKWGFR 208 (366)
Q Consensus 198 ---~~ell~~WGFr 208 (366)
..+.+..-|++
T Consensus 342 ~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 342 KKQIEKGFGKQKHT 355 (385)
T ss_dssp HHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHcCCc
Confidence 22345566776
No 124
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=22.67 E-value=3.5e+02 Score=23.05 Aligned_cols=85 Identities=12% Similarity=0.217 Sum_probs=48.6
Q ss_pred HHHHHhhCCCC--CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEE--
Q psy2298 112 DDLIAETATPP--MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFL-- 187 (366)
Q Consensus 112 ~~~i~~~a~pp--~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFl-- 187 (366)
.+.+.....+. .++.+|+..+.+. ...||+|++.-... + +..+.+.+ -+.+++.++|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~v~~~~~l~----------~--~~~~~~l~-~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 86 NENAVKANCADRVKGITGSMDNLPFQ--NEELDLIWSEGAIY----------N--IGFERGMN-EWSKYLKKGGFIAVSE 150 (257)
T ss_dssp HHHHHHTTCTTTEEEEECCTTSCSSC--TTCEEEEEEESCSC----------C--CCHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred HHHHHHcCCCCceEEEECChhhCCCC--CCCEEEEEecChHh----------h--cCHHHHHH-HHHHHcCCCcEEEEEE
Confidence 34445555553 3788888766543 46899999963332 1 23333322 23455667887766
Q ss_pred --ecCCCc----------------chHHHHHHHHhcCcEEEe
Q psy2298 188 --WCGSSE----------------GLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 188 --WvTn~~----------------~L~~~~ell~~WGFr~ve 211 (366)
|..... ..+.-.++|++=||+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 151 ASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp EEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred eeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 444321 123345678888998776
No 125
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=22.33 E-value=1.1e+02 Score=27.65 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=34.0
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGS 191 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn 191 (366)
|+.+|...+.+. ...||+|++- ...|+ +..+...+ -+.+++.++|.|.+|+-+
T Consensus 85 ~~~~~~e~~~~~--~~sfD~v~~~----------~~~h~--~~~~~~~~-e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 85 YAVAPAEDTGLP--PASVDVAIAA----------QAMHW--FDLDRFWA-ELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp EEECCTTCCCCC--SSCEEEEEEC----------SCCTT--CCHHHHHH-HHHHHEEEEEEEEEEEEC
T ss_pred eehhhhhhhccc--CCcccEEEEe----------eehhH--hhHHHHHH-HHHHHcCCCCEEEEEECC
Confidence 777887777654 5689999983 13343 34443322 256677889988777654
No 126
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=21.88 E-value=3.2e+02 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=17.1
Q ss_pred ccccCCccccccccCCcccEEEECCC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPP 149 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPP 149 (366)
|+.+|+..+.+. ...||+|++.-.
T Consensus 91 ~~~~d~~~~~~~--~~~fD~v~~~~~ 114 (276)
T 3mgg_A 91 FLQANIFSLPFE--DSSFDHIFVCFV 114 (276)
T ss_dssp EEECCGGGCCSC--TTCEEEEEEESC
T ss_pred EEEcccccCCCC--CCCeeEEEEech
Confidence 677787766543 468999999533
No 127
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=21.77 E-value=57 Score=32.77 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHhhCCCC-CccccCCccccccccCCcccEEEECCCCc
Q psy2298 113 DLIAETATPP-MFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 113 ~~i~~~a~pp-~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
+.+++...+- .++++|...+... ....||+|++|||-.
T Consensus 160 ~n~~r~g~~nv~~~~~D~~~~~~~-~~~~fD~Il~D~PcS 198 (479)
T 2frx_A 160 ANISRCGISNVALTHFDGRVFGAA-VPEMFDAILLDAPCS 198 (479)
T ss_dssp HHHHHHTCCSEEEECCCSTTHHHH-STTCEEEEEEECCCC
T ss_pred HHHHHcCCCcEEEEeCCHHHhhhh-ccccCCEEEECCCcC
Confidence 3344444432 2667777665421 345899999999964
No 128
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=21.46 E-value=38 Score=34.08 Aligned_cols=39 Identities=8% Similarity=0.210 Sum_probs=24.5
Q ss_pred HHHHHhhCCCCCccccCCccccccccCCcccEEEECCCCc
Q psy2298 112 DDLIAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLE 151 (366)
Q Consensus 112 ~~~i~~~a~pp~~i~~Dl~~~~l~~l~~kFDVIliDPPW~ 151 (366)
.+.+++....-.+++.|...+. ......||+|++|||-.
T Consensus 143 ~~n~~r~G~~v~~~~~Da~~l~-~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 143 LENVERWGAPLAVTQAPPRALA-EAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp HHHHHHHCCCCEEECSCHHHHH-HHHCSCEEEEEEECCCC
T ss_pred HHHHHHcCCeEEEEECCHHHhh-hhccccCCEEEECCCcC
Confidence 3444555554336677766553 11356899999999963
No 129
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=21.40 E-value=53 Score=31.38 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=33.1
Q ss_pred ccccCCcccccccc-CCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCC
Q psy2298 124 FLKCDVKEFNLKEL-NVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSS 192 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l-~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~ 192 (366)
++..|...+ +..+ ..+||+|++|..-.... .....+ .++.+. +.+++.++|++.+++...
T Consensus 143 v~~~Da~~~-l~~~~~~~fDvIi~D~~~~~~~------~~~L~t-~efl~~-~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 143 IRVDDARMV-AESFTPASRDVIIRDVFAGAIT------PQNFTT-VEFFEH-CHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp EEESCHHHH-HHTCCTTCEEEEEECCSTTSCC------CGGGSB-HHHHHH-HHHHEEEEEEEEEEEEEC
T ss_pred EEECcHHHH-HhhccCCCCCEEEECCCCcccc------chhhhH-HHHHHH-HHHhcCCCcEEEEEecCC
Confidence 455565544 2223 46899999996432111 001112 233222 345677999999999853
No 130
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=21.39 E-value=1.2e+02 Score=28.88 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=43.1
Q ss_pred cccc-CCcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeEEEEecCCCcchHHHHHHHHhcCcEEE
Q psy2298 134 LKEL-NVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRC 210 (366)
Q Consensus 134 l~~l-~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~lFlWvTn~~~L~~~~ell~~WGFr~v 210 (366)
+..+ +.+||+|+.|+==+ ..+-.+|+.+-+.+ |..++.++|.+.-||.++ .++.-|.+=||.+.
T Consensus 179 l~~l~~~~~Da~flDgFsP-------~kNPeLWs~e~f~~--l~~~~~pgg~laTYtaag----~VRR~L~~aGF~V~ 243 (308)
T 3vyw_A 179 IKEVENFKADAVFHDAFSP-------YKNPELWTLDFLSL--IKERIDEKGYWVSYSSSL----SVRKSLLTLGFKVG 243 (308)
T ss_dssp GGGCCSCCEEEEEECCSCT-------TTSGGGGSHHHHHH--HHTTEEEEEEEEESCCCH----HHHHHHHHTTCEEE
T ss_pred HhhhcccceeEEEeCCCCc-------ccCcccCCHHHHHH--HHHHhCCCcEEEEEeCcH----HHHHHHHHCCCEEE
Confidence 4444 35899999996111 11224577666655 466788999999998873 45567888899864
No 131
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=21.26 E-value=70 Score=27.79 Aligned_cols=23 Identities=4% Similarity=0.237 Sum_probs=16.8
Q ss_pred ccccCCccccccccCCcccEEEECC
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEP 148 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDP 148 (366)
|+.+|+..+.+. ...||+|++.-
T Consensus 94 ~~~~d~~~~~~~--~~~fD~v~~~~ 116 (253)
T 3g5l_A 94 YEQKAIEDIAIE--PDAYNVVLSSL 116 (253)
T ss_dssp EEECCGGGCCCC--TTCEEEEEEES
T ss_pred EEEcchhhCCCC--CCCeEEEEEch
Confidence 778887766532 46899999953
No 132
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=21.23 E-value=73 Score=32.38 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=12.3
Q ss_pred CcccEEEECCCCcc
Q psy2298 139 VKFDVIHIEPPLEE 152 (366)
Q Consensus 139 ~kFDVIliDPPW~~ 152 (366)
.+||+||++|||-.
T Consensus 301 ~~fD~Il~NPPf~~ 314 (530)
T 3ufb_A 301 DRVDVILTNPPFGG 314 (530)
T ss_dssp GCBSEEEECCCSSC
T ss_pred ccceEEEecCCCCc
Confidence 58999999999963
No 133
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=20.69 E-value=88 Score=26.82 Aligned_cols=79 Identities=8% Similarity=0.072 Sum_probs=39.5
Q ss_pred HHHHHhhCCCC--CccccCCccccccccC-----CcccEEEECCCCcccccccccccCCCCCHHHHHcCChhhhccCCeE
Q psy2298 112 DDLIAETATPP--MFLKCDVKEFNLKELN-----VKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSF 184 (366)
Q Consensus 112 ~~~i~~~a~pp--~~i~~Dl~~~~l~~l~-----~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~LPI~~L~a~~g~ 184 (366)
.+.+....... .++..|...+ +..+. ..||+|++|.....+.. ..+.+..+ .++.++|+
T Consensus 100 ~~~~~~~~~~~~v~~~~~d~~~~-l~~~~~~~~~~~fD~V~~d~~~~~~~~----------~~~~~~~~---~~LkpgG~ 165 (221)
T 3u81_A 100 QQMLNFAGLQDKVTILNGASQDL-IPQLKKKYDVDTLDMVFLDHWKDRYLP----------DTLLLEKC---GLLRKGTV 165 (221)
T ss_dssp HHHHHHHTCGGGEEEEESCHHHH-GGGTTTTSCCCCCSEEEECSCGGGHHH----------HHHHHHHT---TCCCTTCE
T ss_pred HHHHHHcCCCCceEEEECCHHHH-HHHHHHhcCCCceEEEEEcCCcccchH----------HHHHHHhc---cccCCCeE
Confidence 34444444432 2667776443 22222 58999999975432110 11223333 56678887
Q ss_pred EEEecCCCcchHHHHHHHHh
Q psy2298 185 VFLWCGSSEGLDQGRNCLRK 204 (366)
Q Consensus 185 lFlWvTn~~~L~~~~ell~~ 204 (366)
+++=-...+......+.+..
T Consensus 166 lv~~~~~~~~~~~~~~~l~~ 185 (221)
T 3u81_A 166 LLADNVIVPGTPDFLAYVRG 185 (221)
T ss_dssp EEESCCCCCCCHHHHHHHHH
T ss_pred EEEeCCCCcchHHHHHHHhh
Confidence 76533322334444455443
No 134
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=20.67 E-value=1e+02 Score=26.66 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=41.8
Q ss_pred CccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEEecCCCcc------
Q psy2298 123 MFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFLWCGSSEG------ 194 (366)
Q Consensus 123 ~~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWvTn~~~------ 194 (366)
.++.+|+..+...-....||+|++.-- .++ +..+++..+ -+.+++.++|.+++=+.+...
T Consensus 84 ~~~~~d~~~~~~~~~~~~fD~i~~~~~----------l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 151 (240)
T 3dli_A 84 NVVKSDAIEYLKSLPDKYLDGVMISHF----------VEH--LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLIN 151 (240)
T ss_dssp EEECSCHHHHHHTSCTTCBSEEEEESC----------GGG--SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHH
T ss_pred ceeeccHHHHhhhcCCCCeeEEEECCc----------hhh--CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHH
Confidence 356666655411112468999998411 111 222211111 244566788876664433211
Q ss_pred ------------hHHHHHHHHhcCcEEEeeEEE
Q psy2298 195 ------------LDQGRNCLRKWGFRRCEDICW 215 (366)
Q Consensus 195 ------------L~~~~ell~~WGFr~ve~~vW 215 (366)
.+.-.++|++=||+.++...+
T Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 184 (240)
T 3dli_A 152 FYIDPTHKKPVHPETLKFILEYLGFRDVKIEFF 184 (240)
T ss_dssp HTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEE
T ss_pred HhcCccccccCCHHHHHHHHHHCCCeEEEEEEe
Confidence 133456788889987765554
No 135
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=20.14 E-value=1.1e+02 Score=26.27 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=40.7
Q ss_pred ccccCCccccccccCCcccEEEECCCCcccccccccccCCCCCHHHHHcC--ChhhhccCCeEEEEecC--CC-------
Q psy2298 124 FLKCDVKEFNLKELNVKFDVIHIEPPLEEYQRTLGVTNMQGWSWDQIMQL--EIGEVAAARSFVFLWCG--SS------- 192 (366)
Q Consensus 124 ~i~~Dl~~~~l~~l~~kFDVIliDPPW~~~s~~~G~~~Y~tms~~eI~~L--PI~~L~a~~g~lFlWvT--n~------- 192 (366)
++.+|+..+.+. ...||+|++.-... + ++.++...+ -+.+++.++|.+++=.. ..
T Consensus 106 ~~~~d~~~~~~~--~~~fD~v~~~~~l~----------~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 171 (266)
T 3ujc_A 106 FEANDILTKEFP--ENNFDLIYSRDAIL----------A--LSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDE 171 (266)
T ss_dssp EEECCTTTCCCC--TTCEEEEEEESCGG----------G--SCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHH
T ss_pred EEECccccCCCC--CCcEEEEeHHHHHH----------h--cChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHH
Confidence 677787776543 46899999853221 1 221222211 24456667886665331 11
Q ss_pred ------------cchHHHHHHHHhcCcEEEe
Q psy2298 193 ------------EGLDQGRNCLRKWGFRRCE 211 (366)
Q Consensus 193 ------------~~L~~~~ell~~WGFr~ve 211 (366)
...+.-.++|+.-||+.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 172 FKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 0123445677888888765
Done!