RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2298
         (366 letters)



>gnl|CDD|218409 pfam05063, MT-A70, MT-A70.  MT-A70 is the
           S-adenosylmethionine-binding subunit of human mRNA:m6A
           methyl-transferase (MTase), an enzyme that
           sequence-specifically methylates adenines in pre-mRNAs.
          Length = 176

 Score =  213 bits (543), Expect = 1e-68
 Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 141 FDVIHIEPPLEEYQR---TLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQ 197
           FDVI  +PP                   + D+++ L I E+A   S +FLWC + EG + 
Sbjct: 1   FDVIIADPPWRNKMVARLKKPELPYGTMNDDELLALPIPELADKGSLIFLWCTNREGEEG 60

Query: 198 GRNCLRKWGFRRCEDICWIRTNA-SNPGHSKNIEAKAVFQRTKEHCLMGIKGTVRRSTDG 256
           GR CL+KWG+R  E+I W++TN    P     + +    +  KEHCL+G+KG  +RS  G
Sbjct: 61  GRECLKKWGYRLVEEITWLKTNTLGEPIFP-TLRSGHWLRHPKEHCLVGVKGNPKRSYGG 119

Query: 257 DFIHANVDIDLIISEEMEYGSLEKPVEIFHIMEHFCLGRRRLHIFGRDSTIRPGWLTIGP 316
           DFI+AN+D DLIIS E E     KP E+F I+EH C G R+L +F RD  +RPGWLT G 
Sbjct: 120 DFINANIDTDLIISPERE--HSRKPDELFEIIEHLCPGLRKLELFARD--LRPGWLTWGN 175


>gnl|CDD|227069 COG4725, IME4, Transcriptional activator, adenine-specific DNA
           methyltransferase [Signal transduction mechanisms /
           Transcription].
          Length = 198

 Score = 85.4 bits (211), Expect = 1e-19
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 13/151 (8%)

Query: 169 QIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWIRTNASNPGHSKN 228
           +I+ L +G++A     ++LW  ++  L     CL+ WGF     + W +T A+  G    
Sbjct: 43  EILALPVGQLADMGCLIYLWA-TAPHLAFTVECLKAWGFEYKSFMAWRKTTAA--GRKVR 99

Query: 229 IEAKAVFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLIISEEMEYGSLEKPVEIFHIM 288
           +      + + EH  +G  G  ++       H    I LI+S   E     KP E++ I 
Sbjct: 100 MGTGHWLRTSGEHVFVGTLGNPKQ------SHVPPTISLIVSMTRETS--RKPDELYGIA 151

Query: 289 EHFCLGRRRLHIFGRDSTIRPGWLTIGPDLT 319
           E       +L IFGRD   RPGW TIG  LT
Sbjct: 152 ERLAGTHAKLEIFGRDH--RPGWFTIGNQLT 180


>gnl|CDD|226972 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal
           domain [General function prediction only].
          Length = 411

 Score = 29.8 bits (67), Expect = 2.5
 Identities = 32/126 (25%), Positives = 45/126 (35%), Gaps = 21/126 (16%)

Query: 6   MSSVEFGISDVNNLKYVLGTAEKRCQQR-----KQRIVQADLEREDGEVYNELVYKDSST 60
           ++S E     + + K VL   E     +         V+A L  E G    E V    S 
Sbjct: 43  ITSCEVKAISLQSGKKVLEELEDLFCDKIVLVSNAPSVRAALAEEFGLSEGEAVAVLMSF 102

Query: 61  FLKGTQSSNPHNDYCQHFVDTGQRPQNFIRDVGLADRFEEYPKLRELIKLKDDLIAETAT 120
           FLK               VDT     NF  D+ +    EE  +  E +K  DDL   T+ 
Sbjct: 103 FLKKLG--------FDKVVDT-----NFGADMVI---MEEAAEFLERVKKNDDLPLFTSC 146

Query: 121 PPMFLK 126
            P ++ 
Sbjct: 147 CPGWVN 152


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,817,043
Number of extensions: 1815807
Number of successful extensions: 1297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1289
Number of HSP's successfully gapped: 8
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)