RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2298
(366 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 6e-05
Identities = 71/389 (18%), Positives = 109/389 (28%), Gaps = 160/389 (41%)
Query: 40 ADLEREDGEVYNELV---YKDSSTFLKG--------TQSSNPHNDY-------------C 75
DL + E +EL+ F +G S+ P DY
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 76 Q--HFVDT----GQRPQNF----------IRDVGLA---------DRFEE---------- 100
Q H+V T G P + + A + F
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 101 ---------YPKLR-ELIKLKDDLIAETATP-PMFLKCDVKEFNLKELNVKFDVIHIEPP 149
YP L+D L P PM L++ ++
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-------------LSIS-NL-----T 345
Query: 150 LEEYQRTLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSE---------------- 193
E+ Q + TN + Q+ EI V A++ V G +
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQV---EISLVNGAKNLVV--SGPPQSLYGLNLTLRKAKAPS 400
Query: 194 GLDQGR--NCLRK----WGFRRCEDICWIRTNASNPGHSK-NIEAKAVFQR--TKEHCL- 243
GLDQ R RK F + + P HS + A + + K +
Sbjct: 401 GLDQSRIPFSERKLKFSNRF--------LPVAS--PFHSHLLVPASDLINKDLVKNNVSF 450
Query: 244 ----MGIKGTVRRSTDG-DFIHANVDIDLIISEEMEYGSLEKPVEIFHIMEHF--CLGRR 296
+ I V + DG D + I I + + + PV + +
Sbjct: 451 NAKDIQI--PVYDTFDGSDLRVLSGSISERIVDCI----IRLPV-------KWETTTQFK 497
Query: 297 RLHI--FGRDSTIRPGWLT-IGPDLTNSN 322
HI FG PG + +G LT+ N
Sbjct: 498 ATHILDFG------PGGASGLGV-LTHRN 519
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.003
Identities = 45/316 (14%), Positives = 90/316 (28%), Gaps = 80/316 (25%)
Query: 10 EFGISDVNN-LKYVLGTAE-KRCQQRKQRIVQAD-----LEREDGEVYNELV---YKDSS 59
F DV + K +L E K + L + E+ + V + +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 60 TFLKG---TQSSNPHNDYCQHFVDTGQRPQN----FI-RDVGLADRFEEYPKLRE-LIKL 110
FL T+ P + +++ R N F +V R + Y KLR+ L++L
Sbjct: 92 KFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLEL 147
Query: 111 KDD---------------LIAETATPPMFLKCDVKEFNLKELNVKFDVIHIEPPLEEYQR 155
+ + + +F + LN+K
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK--MDFKIFWLNLK-----------NCNS 194
Query: 156 TLGVTNMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRC----E 211
V M + Q++ + + + + R L+ + C
Sbjct: 195 PETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 212 DICWIRTNASNPGHSKNIEAKAVFQRTKEHC--LMGIKGTVRRSTDGDFIHANVDIDLII 269
++ ++K A F C L+ T R DF+ A + +
Sbjct: 252 NVQ----------NAKAWNA---F---NLSCKILL----TTRFKQVTDFLSAATTTHISL 291
Query: 270 SEEMEYGSLEKPVEIF 285
+ ++ +
Sbjct: 292 DHHSMTLTPDEVKSLL 307
Score = 37.5 bits (86), Expect = 0.008
Identities = 48/362 (13%), Positives = 99/362 (27%), Gaps = 88/362 (24%)
Query: 31 QQRKQRIVQADLEREDGEVYNELVYKDSSTFLKGTQSSNPHND----------------- 73
Q+ +I R D +L L+ S P+ +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 74 --YCQHFVDTGQRPQNFIRDVGLADRFEEYPKLRELIKLKDDLIAETATPPMFLKC-DVK 130
C+ + T R + D + + + LK D +
Sbjct: 263 NLSCKILLTT--------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 131 EFNLKELNVKFDVIHIEPPLEEYQRTLGV--TNMQGW--SWDQIMQLEIGEVAAARSFVF 186
+L + + P L + +++ +WD + ++
Sbjct: 315 PQDLPREVLT---TN---PR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIE--- 360
Query: 187 LWCGSSEGLDQG--RNCLRKWG-FRRCED---------ICWIRTNASNPGH--SKNIEAK 232
S L+ R + F + W S+ +K +
Sbjct: 361 ---SSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 233 AVFQRTKE--HCLMGIKGTVRRSTDGDF-IHANVDID-LIISEEMEYGSLEKPVE---IF 285
V ++ KE + I ++ + ++ +H ++ +D I + + L P +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 286 -HIMEHFCLGRR--RLHIFGR--------DSTIR---PGWLTIGPDLTNSNFNAETYTSY 331
HI H R+ +F + IR W G + N+ + Y Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS-ILNTLQQLKFYKPY 533
Query: 332 FI 333
Sbjct: 534 IC 535
Score = 29.4 bits (65), Expect = 2.5
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 16 VNNLKYVLGTAEKRCQQRKQ-RIVQADLEREDGEVYNE 52
VN + L E+ K +++ L ED ++ E
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 29.1 bits (66), Expect = 2.3
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 135 KELNVKFDVIHIEPPLEEYQRTLG 158
++L + + VI+I+P ++ + L
Sbjct: 72 EKLGIGYKVINIKPIVDSFVENLE 95
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 28.3 bits (64), Expect = 3.6
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 135 KELNVKFDVIHIEPPLEEYQRTLG 158
+LN+++ +I I+ L+ + +
Sbjct: 77 ADLNLEYKIIEIQSILDAFIKQSE 100
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.4 bits (60), Expect = 6.6
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 6 MSSVEFGISDVNNLKYVLGTAE 27
+S +E + K+++ E
Sbjct: 148 VSGLELSDTKQKGKKFLVIAYE 169
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 27.6 bits (62), Expect = 7.1
Identities = 2/24 (8%), Positives = 8/24 (33%)
Query: 135 KELNVKFDVIHIEPPLEEYQRTLG 158
++ ++ + I P +
Sbjct: 76 EKFSIPYTEYSIAPYDAIFSSHFK 99
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid
biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm,
lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Length = 343
Score = 27.3 bits (61), Expect = 8.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 17 NNLKYVLGTAEKRCQQRKQRIVQADLEREDGE 48
+LK L + K ++V D E+E
Sbjct: 193 KDLKDCLEEVIFQSVNIKAQVVVQD-EKEQNI 223
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein,
cysteine-rich motif, GTPase activation; 2.00A
{Cryptosporidium parvum iowa II}
Length = 138
Score = 26.3 bits (58), Expect = 9.3
Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 155 RTLGV-------TNMQGWSWDQIMQLEIGEVAAARSF 184
R +GV +++ ++ Q+++++IG AR++
Sbjct: 67 RKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNY 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,789,720
Number of extensions: 348207
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 15
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)