RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2298
         (366 letters)



>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus
           subtilis [TaxId: 1423]}
          Length = 151

 Score = 29.8 bits (66), Expect = 0.27
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 162 MQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCE 211
            +G +   +  +           + L  GS    +  R     +GF+ CE
Sbjct: 84  RKGVAKQVLQHIIEEAEKRGYERLSLETGSMASFEPARKLYESFGFQYCE 133


>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 112

 Score = 27.0 bits (60), Expect = 1.6
 Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 17  NNL-KYVLGTAEKRCQQRKQRIVQADLEREDGEVYNELVYKDSSTFLKGTQSSNPHNDYC 75
           N L K ++   +KR ++  +R+   +    + ++  E+V     +  +G  ++    D  
Sbjct: 3   NKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMV----MSHSQGGAAAGSSEDLM 58

Query: 76  QHFVDTGQRPQNFIRDVGLADRFEEYPK-LRELIKLKDDLI 115
           +      +R +  +    LA   E+  + L E+++  D+L 
Sbjct: 59  KELYQRCERMRPTL--FRLASDTEDNDEALAEILQANDNLT 97


>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 338

 Score = 27.0 bits (59), Expect = 3.4
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 318 LTNSNFNAETYTSYFINGYISTGCTERIEALRP 350
           +  SNF  +  T + ++G+I  G    +  +  
Sbjct: 61  IKFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCK 93


>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Dog (Canis familiaris) [TaxId: 9615]}
          Length = 337

 Score = 26.7 bits (58), Expect = 5.3
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 318 LTNSNFNAETYTSYFINGYISTGCTERIEALR 349
           +  SNF  +  T + I+G+I  G    +  + 
Sbjct: 61  IGASNFQTDKKTRFIIHGFIDKGEENWLLDMC 92


>d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 297

 Score = 26.1 bits (57), Expect = 7.8
 Identities = 6/58 (10%), Positives = 18/58 (31%)

Query: 161 NMQGWSWDQIMQLEIGEVAAARSFVFLWCGSSEGLDQGRNCLRKWGFRRCEDICWIRT 218
             +      ++   +    A    + L         +    L++ G+++     WI+ 
Sbjct: 236 KAERRGLGGLLAAAMSREIARGEEITLTAWIVATNWRSEALLKRIGYQKDLVNEWIKL 293


>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 281

 Score = 25.8 bits (57), Expect = 9.1
 Identities = 8/31 (25%), Positives = 11/31 (35%)

Query: 2   NRAEMSSVEFGISDVNNLKYVLGTAEKRCQQ 32
           N  E S   F  ++V  L       EK   +
Sbjct: 192 NEREFSVFNFEEANVGLLFRHFDEYEKEFYR 222


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,438,798
Number of extensions: 69548
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 9
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)