BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy23
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/264 (72%), Positives = 216/264 (81%), Gaps = 17/264 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFE GMATCFAYGQTGSGKTHTMGGDF GK QDC KGIYA+AA+DVF +
Sbjct: 157 YRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLM 216
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
LK P Y+ L L V A+FFEIYSGKVFDLL K KLRVLEDGKQQVQ+VGL E+ V VE+
Sbjct: 217 LKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQEREVKCVED 276
Query: 213 VLKLIQHGNS------------ASINNICFSFL-----QVHGKFSLIDLAGNERGADTSS 255
VLKLI GNS +S ++ F + ++HGKFSLIDLAGNERGADTSS
Sbjct: 277 VLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHGKFSLIDLAGNERGADTSS 336
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTR+EGAEINKSLLALKECIRALGR H PFRASKLTQVLRDSFIG+ SRTCMIA
Sbjct: 337 ADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIAT 396
Query: 316 ISPGMSSCEHSLNTLRYADRVKEL 339
ISPGM+SCE++LNTLRYA+RVKEL
Sbjct: 397 ISPGMASCENTLNTLRYANRVKEL 420
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 217/265 (81%), Gaps = 17/265 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFEGG ATCFAYGQTGSGKTHTMGGD GK+Q+ KGIYAMA++DVF L
Sbjct: 139 YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLL 198
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
P+YR LNL V +FFEIY+GKVFDLL +KAKLRVLED +QQVQ+VGL E +V ++
Sbjct: 199 KNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADD 258
Query: 213 VLKLIQHGNS------------ASINNICFSFL-----QVHGKFSLIDLAGNERGADTSS 255
V+K+I G++ +S ++ CF L ++HGKFSL+DLAGNERGADTSS
Sbjct: 259 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSS 318
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTRMEGAEINKSLLALKECIRALG+ AH PFR SKLTQVLRDSFIG+ SRTCMIAM
Sbjct: 319 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 378
Query: 316 ISPGMSSCEHSLNTLRYADRVKELA 340
ISPG+SSCE++LNTLRYADRVKEL+
Sbjct: 379 ISPGISSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 217/265 (81%), Gaps = 17/265 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFEGG ATCFAYGQTGSGKTHTMGGD GK+Q+ KGIYAMA++DVF L
Sbjct: 67 YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLL 126
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
P+YR LNL V +FFEIY+GKVFDLL +KAKLRVLED +QQVQ+VGL E +V ++
Sbjct: 127 KNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADD 186
Query: 213 VLKLIQHGNS------------ASINNICFSFL-----QVHGKFSLIDLAGNERGADTSS 255
V+K+I G++ +S ++ CF L ++HGKFSL+DLAGNERGADTSS
Sbjct: 187 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSS 246
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTRMEGAEINKSLLALKECIRALG+ AH PFR SKLTQVLRDSFIG+ SRTCMIAM
Sbjct: 247 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 306
Query: 316 ISPGMSSCEHSLNTLRYADRVKELA 340
ISPG+SSCE++LNTLRYADRVKEL+
Sbjct: 307 ISPGISSCEYTLNTLRYADRVKELS 331
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/265 (68%), Positives = 216/265 (81%), Gaps = 17/265 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFEGG ATCFAYGQTGSGKTHTMGGD GK Q+ KGIYAMA++DVF L
Sbjct: 119 YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLL 178
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
P YR L L V +FFEIY+GK+FDLL +KAKLRVLEDGKQQVQ+VGL E +V+S ++
Sbjct: 179 KNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADD 238
Query: 213 VLKLIQHGNS------------ASINNICFSFL-----QVHGKFSLIDLAGNERGADTSS 255
V+K+I G++ +S ++ CF + ++HGKFSL+DLAGNERGADTSS
Sbjct: 239 VIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSS 298
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTRMEGAEINKSLLALKECIRALG+ AH PFR SKLTQVLRDSFIG+ SRTCMIA
Sbjct: 299 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAT 358
Query: 316 ISPGMSSCEHSLNTLRYADRVKELA 340
ISPG+SSCE++LNTLRYADRVKEL+
Sbjct: 359 ISPGISSCEYTLNTLRYADRVKELS 383
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 170/280 (60%), Gaps = 26/280 (9%)
Query: 93 FRFSAKPLVKTIFEGG-MATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFK 151
+ + KPL+ ++E G + +CFAYGQTGSGKT+TM G Q Q GI+ AA D+F
Sbjct: 68 YENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGS-QPYGQSDTPGIFQYAAGDIFT 126
Query: 152 LLKSPKYRGLNLH-VSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGL-TEQVVDS 209
L Y N + SF+EIY GK++DLL ++ + LE+GK++V + L +V+
Sbjct: 127 FLNI--YDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTK 184
Query: 210 VEEVLKLI---------------QHGNSASINNICFSFLQVH---GKFSLIDLAGNERGA 251
E +LK+I + S +I NI + + GK + IDLAG+ERGA
Sbjct: 185 EELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGA 244
Query: 252 DTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTC 311
DT S N+QT+ +GA IN+SLLALKECIRA+ H+PFR S+LT+VLRD F+G KS++
Sbjct: 245 DTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVG-KSKSI 303
Query: 312 MIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPP 351
MIA ISP +S CE +LNTLRY+ RVK EG P P
Sbjct: 304 MIANISPTISCCEQTLNTLRYSSRVKN-KGNSKLEGKPIP 342
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 151/281 (53%), Gaps = 40/281 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
++ +PL++ FEG AT FAYGQTGSGKT+TMG + ++GI A + FKL
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLL---AEKAKLRVLEDGKQQVQIVGLTEQVVDS 209
+ L+ V S+ E+Y + DLL +++ ED + V + G+ E V+
Sbjct: 128 IDENDL--LDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEG 185
Query: 210 VEEVLKLIQHGNSA------------SINNICFSF-LQVHG-----------------KF 239
++EVL L++ GN+A S ++ F+ L+ G KF
Sbjct: 186 LDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKF 245
Query: 240 SLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG---RKGAHLPFRASKLT 296
+DLAG+ER T S + + E +IN SLLAL I ALG R+G+H+P+R SK+T
Sbjct: 246 HFVDLAGSERVLKTGSTGERLK-ESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKIT 304
Query: 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
++L+DS +G ++T MIA +SP S + +LNTL YA R +
Sbjct: 305 RILKDS-LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 151/281 (53%), Gaps = 40/281 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
++ +PL++ FEG AT FAYGQTGSGKT+TMG + ++GI A + FKL
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLL---AEKAKLRVLEDGKQQVQIVGLTEQVVDS 209
+ L+ V S+ E+Y + DLL +++ ED + V + G+ E V+
Sbjct: 128 IDENDL--LDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEG 185
Query: 210 VEEVLKLIQHGNSA------------SINNICFSF-LQVHG-----------------KF 239
++EVL L++ GN+A S ++ F+ L+ G KF
Sbjct: 186 LDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKF 245
Query: 240 SLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG---RKGAHLPFRASKLT 296
+DLAG+ER T S + R E +IN SLLAL I ALG R+G+++P+R SK+T
Sbjct: 246 HFVDLAGSERVLKTGSTG-ELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKIT 304
Query: 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
++L+DS +G ++T MIA +SP S + +LNTL YA R +
Sbjct: 305 RILKDS-LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 145/271 (53%), Gaps = 33/271 (12%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F+ S KPL+ + EG +T FAYGQTG+GKT TMGG+ + + G + K +F
Sbjct: 74 FQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKE------EPGAIPNSFKHLFDA 127
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
+ S N V S+ E+Y+ ++ DL+ KL + ED + + + GL+ V + E
Sbjct: 128 INSSS-SNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAE 186
Query: 213 VLKLIQHG-----------NSASINNICFSFLQVH-------------GKFSLIDLAGNE 248
+ L+ G N S + +++ GK +L+DLAG+E
Sbjct: 187 LSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSE 246
Query: 249 RGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKS 308
R + T A +T +EGA+IN SL AL I L H+P+R SKLT++L+DS +G S
Sbjct: 247 RQSKT-GATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDS-LGGNS 304
Query: 309 RTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
+T M A ISP ++ + +++TLRYADR K++
Sbjct: 305 KTLMCANISPASTNYDETMSTLRYADRAKQI 335
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 142/275 (51%), Gaps = 37/275 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F + KP++++ G T AYG TG+GKTHTM G + G+ + ++K
Sbjct: 90 FEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSAD------EPGVMYLTMLHLYKC 143
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
+ K + + S+ E+Y+ ++ DLL L V ED ++ V + GLT S EE
Sbjct: 144 MDEIKEEKI-CSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEE 202
Query: 213 VLKLIQHGNS---------ASINNICFSFLQVH----------------GKFSLIDLAGN 247
+L L+ +GN + ++ + Q++ K SLIDLAG+
Sbjct: 203 ILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGS 262
Query: 248 ERGADTSSANRQTRMEGAEINKSLLALKECIRALG---RKGAHLPFRASKLTQVLRDSFI 304
ER A TS A +EG IN+SLLAL I AL RK H+P+R SKLT++L+DS +
Sbjct: 263 ER-ASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDS-L 320
Query: 305 GDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
G +T MIA +SP + + NTL+YA+R K++
Sbjct: 321 GGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 148/284 (52%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKK-----GIYAMAAK 147
+R P++ + G AT FAYGQTG+GKT TM G+ + C + GI
Sbjct: 82 YRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIPRTLH 141
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 142 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 257
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 317 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 40/282 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+ PL++ + G T FAYGQTG+GKTHTM G+ + + D GI A
Sbjct: 85 YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALS 144
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLA--EKAKLRVLEDG--KQQVQIVGLT 203
+F L+ + + + S+ E+Y+ ++ DLL+ + K+R+ +D K V I GL
Sbjct: 145 HLFDELRMME---VEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLE 201
Query: 204 EQVVDSVEEVLKLIQHGNS------------ASINNICFSFLQVH--------------G 237
E V S ++V KL++ G +S ++ FS + VH G
Sbjct: 202 EIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIV-VHIRENGIEGEDMLKIG 260
Query: 238 KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQ 297
K +L+DLAG+E + + E IN+SLL L I AL + H+P+R SKLT+
Sbjct: 261 KLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTR 320
Query: 298 VLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
+L++S +G +++T +IA ISPG E +L+TL YA R K +
Sbjct: 321 LLQES-LGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNI 361
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + D GI
Sbjct: 81 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLH 140
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 141 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 197
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 198 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 256
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 257 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 315
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 316 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + D GI
Sbjct: 84 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLH 143
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 144 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 200
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 201 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 259
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 260 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 318
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 319 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + D GI
Sbjct: 82 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIPRTLH 141
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 142 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 257
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 317 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + D GI
Sbjct: 82 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLH 141
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 142 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 257
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 317 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + D GI
Sbjct: 82 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLH 141
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 142 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 257
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 317 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + D GI
Sbjct: 67 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLH 126
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 127 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 183
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 184 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 242
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 243 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 301
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 302 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + D GI
Sbjct: 73 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLH 132
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 133 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 189
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 190 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 248
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 249 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 307
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 308 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 133/270 (49%), Gaps = 31/270 (11%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCK-KGIYAMAAKDVFKLLKS 155
AK +VK + EG T FAYGQT SGKTHTM +GK D + GI +D+F + S
Sbjct: 66 AKKIVKDVLEGYNGTIFAYGQTSSGKTHTM----EGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVL 214
L H+ S+FEIY K+ DLL K L V ED + + G TE+ V S +EV+
Sbjct: 122 MD-ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 215 KLIQHGNS---ASINNICFSFLQVH-------------------GKFSLIDLAGNERGAD 252
I G S ++ N+ + H GK L+DLAG+E+ +
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 253 TSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
T A E INKSL AL I AL ++P+R SK+T++L+DS +G RT +
Sbjct: 241 T-GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS-LGGNCRTTI 298
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKELAAT 342
+ SP + + +TL + R K + T
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKTIKNT 328
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 143/290 (49%), Gaps = 46/290 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+R + +++ FEG FAYGQTG+GK++TM GK + ++GI +D+F
Sbjct: 90 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM----MGKQEKDQQGIIPQLCEDLFSR 145
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK--LRVLEDGKQQVQIVGLTEQVVDSV 210
+ ++ V S+ EIY +V DLL K K LRV E + L++ V S
Sbjct: 146 INDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSY 205
Query: 211 EEVLKLIQHGNSA----------------SINNICFS----------FLQVHGKFSLIDL 244
++ L+ GN A ++ NI F+ + K SL+DL
Sbjct: 206 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 265
Query: 245 AGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA------------HLPFRA 292
AG+ER AD++ A EGA INKSL L + I AL + +P+R
Sbjct: 266 AGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 324
Query: 293 SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAAT 342
S LT +LR++ +G SRT M+A +SP + + +L+TLRYADR K++ T
Sbjct: 325 SVLTWLLREN-LGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNT 373
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 143/290 (49%), Gaps = 46/290 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+R + +++ FEG FAYGQTG+GK++TM GK + ++GI +D+F
Sbjct: 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM----MGKQEKDQQGIIPQLCEDLFSR 129
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK--LRVLEDGKQQVQIVGLTEQVVDSV 210
+ ++ V S+ EIY +V DLL K K LRV E + L++ V S
Sbjct: 130 INDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSY 189
Query: 211 EEVLKLIQHGNSA----------------SINNICFS----------FLQVHGKFSLIDL 244
++ L+ GN A ++ NI F+ + K SL+DL
Sbjct: 190 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 245 AGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA------------HLPFRA 292
AG+ER AD++ A EGA INKSL L + I AL + +P+R
Sbjct: 250 AGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 293 SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAAT 342
S LT +LR++ +G SRT M+A +SP + + +L+TLRYADR K++ T
Sbjct: 309 SVLTWLLREN-LGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNT 357
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 132/267 (49%), Gaps = 31/267 (11%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCK-KGIYAMAAKDVFKLLKS 155
AK +VK + EG T FAYGQT SGKTHTM +GK D + GI +D+F + S
Sbjct: 66 AKKIVKDVLEGYNGTIFAYGQTSSGKTHTM----EGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVL 214
L H+ S+FEIY K+ DLL K L V ED + + G TE+ V S +EV+
Sbjct: 122 MD-ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 215 KLIQHGNS---ASINNICFSFLQVH-------------------GKFSLIDLAGNERGAD 252
I G S ++ N+ + H GK L+DLAG+E+ +
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 253 TSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
T A E INKSL AL I AL ++P+R SK+T++L+DS +G RT +
Sbjct: 241 T-GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS-LGGNCRTTI 298
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKEL 339
+ SP + + +TL + R K +
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 143/290 (49%), Gaps = 46/290 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+R + +++ FEG FAYGQTG+GK++TM GK + ++GI +D+F
Sbjct: 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM----MGKQEKDQQGIIPQLCEDLFSR 129
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK--LRVLEDGKQQVQIVGLTEQVVDSV 210
+ ++ V S+ EIY +V DLL K K LRV E + L++ V S
Sbjct: 130 INDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSY 189
Query: 211 EEVLKLIQHGNSA----------------SINNICFS----------FLQVHGKFSLIDL 244
++ L+ GN A ++ NI F+ + K SL+DL
Sbjct: 190 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 245 AGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA------------HLPFRA 292
AG+ER AD++ A EGA INKSL L + I AL + +P+R
Sbjct: 250 AGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 293 SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAAT 342
S LT +LR++ +G SRT M+A +SP + + +L+TLRYADR K++ T
Sbjct: 309 SVLTWLLREN-LGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNT 357
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 146/284 (51%), Gaps = 43/284 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKK-----GIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + + GI
Sbjct: 82 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIPRTLH 141
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL + +L++ +D K+ V I G
Sbjct: 142 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 202 LTEQVVDSVEEVLKLIQHG-----NSASINNI-------CFSFLQVH------------- 236
L E V + +EV ++++ G +A++ N FS + +H
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS-VTIHMKETTIDGEELVK 257
Query: 237 -GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKL 295
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKL 316
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T++L+DS +G ++RT +IA ISP + E +L+TL YA R K +
Sbjct: 317 TRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 132/270 (48%), Gaps = 31/270 (11%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCK-KGIYAMAAKDVFKLLKS 155
AK +VK + EG T FAYGQT SGK HTM +GK D + GI +D+F + S
Sbjct: 66 AKKIVKDVLEGYNGTIFAYGQTSSGKNHTM----EGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVL 214
L H+ S+FEIY K+ DLL K L V ED + + G TE+ V S +EV+
Sbjct: 122 MD-ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 215 KLIQHGNS---ASINNICFSFLQVH-------------------GKFSLIDLAGNERGAD 252
I G S ++ N+ + H GK L+DLAG+E+ +
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 253 TSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
T A E INKSL AL I AL ++P+R SK+T++L+DS +G RT +
Sbjct: 241 T-GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS-LGGNCRTTI 298
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKELAAT 342
+ SP + + +TL + R K + T
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKTIKNT 328
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 143/290 (49%), Gaps = 46/290 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+R + +++ FEG FAYGQTG+GK++TM GK + ++GI +D+F
Sbjct: 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM----MGKQEKDQQGIIPQLCEDLFSR 129
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK--LRVLEDGKQQVQIVGLTEQVVDSV 210
+ ++ V S+ EIY +V DLL K K LRV E + L++ V S
Sbjct: 130 INDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSY 189
Query: 211 EEVLKLIQHGN----------------SASINNICFS----------FLQVHGKFSLIDL 244
++ L+ GN S ++ NI F+ + K SL+DL
Sbjct: 190 NDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 245 AGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA------------HLPFRA 292
AG+ER AD++ A EGA INKSL L + I AL + +P+R
Sbjct: 250 AGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 293 SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAAT 342
S LT +LR++ +G SRT M+A +SP + + +L+TLRYADR K++ T
Sbjct: 309 SVLTWLLREN-LGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNT 357
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 141/269 (52%), Gaps = 35/269 (13%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSP 156
+ LV + +G FAYGQTG+GKT+TM G + GI A + +F ++
Sbjct: 69 VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE------NPGINQRALQLLFSEVQE- 121
Query: 157 KYRGLNLHVSASFFEIYSGKVFDLLA----EKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
K ++ S EIY+ + DLL EK ++R+ DG Q+ + GLTE V SV++
Sbjct: 122 KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDD 181
Query: 213 VLKLIQHGNS---ASINNI-------------------CFSFLQVHGKFSLIDLAGNERG 250
+ K+ + G++ N+ C + L+ GK +L+DLAG+ER
Sbjct: 182 INKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERV 241
Query: 251 ADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRT 310
+ + + R E INKSL AL + I AL + H+PFR SKLT +L+DS GD S+T
Sbjct: 242 GKSGAEGSRLR-EAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGD-SKT 299
Query: 311 CMIAMISPGMSSCEHSLNTLRYADRVKEL 339
M+ +SP + +L +L++A+RV+ +
Sbjct: 300 LMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 141/275 (51%), Gaps = 37/275 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG----DFQGKTQDCKKGIYAMAAKD 148
F FS KP V I G T FAYGQTG+GK++TM G D G +G+ +
Sbjct: 65 FDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG------RGVIPRIVEQ 118
Query: 149 VFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLA-EKAKLRVLEDGKQQVQIVGLTEQVV 207
+F + S + V S+ EIY ++ DLLA + L V E+ + V + GL E V
Sbjct: 119 IFTSILSSA-ANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYV 177
Query: 208 DSVEEVLKLIQHGNSA----------------SINNICFSFLQVH------GKFSLIDLA 245
SV+EV ++++ G +A SI I + V G+ L+DLA
Sbjct: 178 SSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLA 237
Query: 246 GNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR-KGAHLPFRASKLTQVLRDSFI 304
G+E+ T A+ QT E +INKSL AL I AL K +H+P+R SKLT++L++S +
Sbjct: 238 GSEKVGKT-GASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQES-L 295
Query: 305 GDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
G SRT +I SP + +L+TLR+ R K +
Sbjct: 296 GGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSI 330
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 142/270 (52%), Gaps = 35/270 (12%)
Query: 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
+PLV ++ +G T FAYGQTG+GKT+TM G +G + K+G+ + +F + +
Sbjct: 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG-IRGDPE--KRGVIPNSFDHIFTHIS--R 145
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLA--EKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLK 215
+ V AS+ EIY ++ DLL+ + +L + E V + L+ V SV+E+
Sbjct: 146 SQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEH 205
Query: 216 LIQHGN----------------SASINNICFSFLQVH---------GKFSLIDLAGNERG 250
++ GN S +I I +V GK +L+DLAG+ER
Sbjct: 206 VMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQ 265
Query: 251 ADTSSANRQTRMEGAEINKSLLALKECIRAL-GRKGAHLPFRASKLTQVLRDSFIGDKSR 309
A T + + + E +IN SL AL I AL K H+P+R SKLT++L+DS +G ++
Sbjct: 266 AKTGAQGERLK-EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS-LGGNAK 323
Query: 310 TCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T M+A + P + E +L TLRYA+R K +
Sbjct: 324 TVMVANVGPASYNVEETLTTLRYANRAKNI 353
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 141/280 (50%), Gaps = 43/280 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F+ + +++ F+G A FAYGQTGSGK++TM G T D + G+ +F+
Sbjct: 77 FKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG-----TAD-QPGLIPRLCSGLFER 130
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQV---QIVGLTEQVVDS 209
+ + + V S+ EIY+ KV DLL K + L+ + V + GL++ V S
Sbjct: 131 TQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTS 190
Query: 210 VEEVLKLIQHGN------------SASINNICFSFLQVH--------------GKFSLID 243
+++ L+ GN +S ++ F H GK SL+D
Sbjct: 191 YKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVD 250
Query: 244 LAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA------HLPFRASKLTQ 297
LAG+ER T +A + + EG+ INKSL L I AL + A +P+R S LT
Sbjct: 251 LAGSERATKTGAAGDRLK-EGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTW 309
Query: 298 VLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
+L+DS +G S+T M+A +SP + + +L+TLRYADR K
Sbjct: 310 LLKDS-LGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 36/286 (12%)
Query: 87 NTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAA 146
N D K LV++ +G FAYGQTGSGKT T+ G D G+ A
Sbjct: 58 NATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG------ADSNPGLTPRAM 111
Query: 147 KDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLL----AEKAKLRVLEDGKQQVQIVGL 202
++F+++K + + + A E+Y + DLL A++ KL + +D K V + +
Sbjct: 112 SELFRIMKKDSNK-FSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENV 170
Query: 203 TEQVVDSVEEVLKLIQHGNS------------ASINNICFSF------LQVH----GKFS 240
T + + EE+ +IQ G+ +S +++ S LQ GK S
Sbjct: 171 TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLS 230
Query: 241 LIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLR 300
+DLAG+ER + SA Q + E INKSL AL + I AL H+P+R KLT ++
Sbjct: 231 FVDLAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMS 289
Query: 301 DSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTE 346
DS +G ++T M ISP S+ + + N+L YA RV+ + DP++
Sbjct: 290 DS-LGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI-VNDPSK 333
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 133/272 (48%), Gaps = 36/272 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ +AK +V + G T FAYGQT SGKTHTM G K+GI D+F
Sbjct: 69 YNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVI---GDSVKQGIIPRIVNDIFNH 125
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ + + L H+ S++EIY K+ DLL K L V ED + + G TE+ V S E
Sbjct: 126 IYAMEV-NLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPE 184
Query: 212 EVLKLIQHGNSASINNICFSFLQVH------------------------GKFSLIDLAGN 247
+V ++I+ G S +I + + H GK L+DLAG+
Sbjct: 185 DVFEVIEEGKSN--RHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242
Query: 248 ERGADTSSANRQTRMEGAEINKSLLALKECIRAL--GRKGAHLPFRASKLTQVLRDSFIG 305
E+ + T A E INKSL AL I AL G K H+P+R SKLT++L++S +G
Sbjct: 243 EKVSKT-GAEGTVLDEAKNINKSLSALGNVISALADGNK-THIPYRDSKLTRILQES-LG 299
Query: 306 DKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
+RT ++ SP + + +TL + R K
Sbjct: 300 GNARTTIVICCSPASFNESETKSTLDFGRRAK 331
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 139/276 (50%), Gaps = 36/276 (13%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSP 156
K LV++ +G FAYGQTGSGKT T+ G + G+ A K++F +LK
Sbjct: 76 TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG------HESNPGLTPRATKELFNILKRD 129
Query: 157 KYRGLNLHVSASFFEIYSGKVFDLL----AEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
R + + A E+Y + DLL A + KL + +D K V + +T + ++EE
Sbjct: 130 SKR-FSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEE 188
Query: 213 VLKLIQHGNS------------ASINNICFSFL----------QVHGKFSLIDLAGNERG 250
+ +++ G+ +S +++ S + GK S +DLAG+ER
Sbjct: 189 LRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAGSERV 248
Query: 251 ADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRT 310
+ SA Q + E INKSL AL + I AL H+P+R KLT ++ DS +G ++T
Sbjct: 249 KKSGSAGNQLK-EAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDS-LGGNAKT 306
Query: 311 CMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTE 346
M +SP S+ + + N+L YA RV+ + DP++
Sbjct: 307 LMFVNVSPAESNLDETYNSLLYASRVRTI-VNDPSK 341
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 144/291 (49%), Gaps = 66/291 (22%)
Query: 105 FEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYRGLNL- 163
FEG FAYGQTGSGK++TM G T D + G+ +D+F+ + S + N+
Sbjct: 133 FEGYHTCIFAYGQTGSGKSYTMMG-----TPD-QPGLIPRTCEDLFQRIASAQDETPNIS 186
Query: 164 -HVSASFFEIYSGKVFDLLAEKAK------LRVLEDGKQQVQIVGLTEQVVDSVEEVLKL 216
+V S+FE+Y+ V DLLA L+V E + + LTE V +EE+++
Sbjct: 187 YNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRW 246
Query: 217 IQHG------------NSASINNICFSFL--QVH------------GKFSLIDLAGNERG 250
++ G +++S ++ F+ + Q+H + L+DLAG+ER
Sbjct: 247 MRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERA 306
Query: 251 ADTSSANRQTRMEGAEINKSLLALKECIRAL----------------------GRKGAHL 288
T + ++ R EG+ INKSL L I AL G + +
Sbjct: 307 KSTEATGQRLR-EGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVV 365
Query: 289 PFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
P+R S LT +L+DS +G S+T MIA ISP + + +L+TLRYAD+ K +
Sbjct: 366 PYRDSVLTWLLKDS-LGGNSKTAMIACISP--TDYDETLSTLRYADQAKRI 413
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 57/311 (18%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
+ +PL+ ++ +G T FAYGQTG+GKT+TM G + + +G+ A + +F +
Sbjct: 89 TVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTW---VEPELRGVIPNAFEHIFTHIS- 144
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLAEKA--KLRVLEDGKQQVQIVGLTEQVVDSVEEV 213
+ + V AS+ EIY ++ DLL+++ +L + E+ + V I L+ V +V+E+
Sbjct: 145 -RSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVTKNVKEI 203
Query: 214 LKLIQHGN------SASINNICFS----FL------------QVH---GKFSLIDLAGNE 248
++ GN S +N + F+ Q H GK +L+DLAG+E
Sbjct: 204 EHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSE 263
Query: 249 R----GADTSSA-------------------NRQTRMEGAEINKSLLALKECIRAL-GRK 284
R G +T+ + E ++IN SL AL I AL G +
Sbjct: 264 RQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNR 323
Query: 285 GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDP 344
H+P+R SKLT++L+DS +G ++T M+A + P S + SL+TLR+A+R K +
Sbjct: 324 STHIPYRDSKLTRLLQDS-LGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPR 382
Query: 345 TEGPPPPTIIQ 355
P T+++
Sbjct: 383 VNEDPKDTLLR 393
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 140/278 (50%), Gaps = 44/278 (15%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSP 156
A P++ + +G T FAYGQT SGKT+TM G ++D G+ A D+F+ +K
Sbjct: 66 AAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG-----SED-HLGVIPRAIHDIFQKIKKF 119
Query: 157 KYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVL---EDGKQQVQIVGLTEQVVDSVEEV 213
R L V S+ EIY+ + DLL K++ L ED + V + LTE+VV + E
Sbjct: 120 PDREFLLRV--SYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMA 177
Query: 214 LKLIQHGN-------------SASINNICFSFLQVHGK--------------FSLIDLAG 246
LK I G S+ + I L+ K +L+DLAG
Sbjct: 178 LKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAG 237
Query: 247 NERGADTSSANRQTRMEGAEINKSLLALKECIRAL--GRKGAHLPFRASKLTQVLRDSFI 304
+ER A T +A + + EG IN+SL L + I+ L G+ G + +R SKLT++L++S +
Sbjct: 238 SERAAQTGAAGVRLK-EGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNS-L 295
Query: 305 GDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAAT 342
G ++T +I I+P S + +L L++A K + T
Sbjct: 296 GGNAKTRIICTITP--VSFDETLTALQFASTAKYMKNT 331
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
S +P+++ + EG A+ AYG TG+GKTHTM G + + G+ A D+ +L +
Sbjct: 86 SVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPE------QPGVIPRALMDLLQLTRE 139
Query: 156 PKYRG--LNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
G L V+ S+ EIY KV DLL L + ED + + I GL+++ + S +
Sbjct: 140 EGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFAD 199
Query: 213 VLKLIQHGNSASINNICFS--------------------------FLQVHGKFSLIDLAG 246
+ H AS N + F Q GK LIDLAG
Sbjct: 200 FER---HFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAG 256
Query: 247 NERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGD 306
+E T + + + GA IN SL L + + AL + +P+R SKLT++L+DS +G
Sbjct: 257 SEDNRRTGNKGLRLKESGA-INTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDS-LGG 314
Query: 307 KSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
+ + +IA I+P +++ L +A R KE+
Sbjct: 315 SAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 42/280 (15%)
Query: 91 LDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCK-KGIYAMAAKDV 149
L + AK +V +G T YGQTG+GKT+TM G T++ K +GI A + V
Sbjct: 87 LVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM----MGATENYKHRGILPRALQQV 142
Query: 150 FKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLA-------EKAKLRVLEDGKQQVQIVGL 202
F++++ + + V S+ EIY+ +FDLL+ + ++E+ Q V I GL
Sbjct: 143 FRMIEERPTHAITVRV--SYLEIYNESLFDLLSTLPYVGPSVTPMTIVEN-PQGVFIKGL 199
Query: 203 TEQVVDSVEEVLKLIQHG-------------NSASINNICFSFLQVH-----------GK 238
+ + E+ L+ G NS+ + I +L+ H K
Sbjct: 200 SVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSK 259
Query: 239 FSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG-RKGAHLPFRASKLTQ 297
+L+DLAG+ER + S Q E INKSL L++ I ALG +K H+PFR KLT
Sbjct: 260 INLVDLAGSERLGKSGSEG-QVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTH 318
Query: 298 VLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
L+DS +G ++ I + E +L++LR+A R+K
Sbjct: 319 ALKDS-LGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 54/280 (19%)
Query: 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM--GGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
+ LV++ +G FAYGQTGSGKT+TM GD G+ M +FK +
Sbjct: 75 RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD----------GMIPMTLSHIFKWTAN 124
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLL--------------AEKAKLRVLEDGKQQVQIVG 201
K RG N + + EIY+ + DLL ++K +R + KQ I
Sbjct: 125 LKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIR-HDHEKQGTYITN 183
Query: 202 LTEQVVDSVEEVLKLIQHGN---------SASINNICFSFLQVH-------------GKF 239
+T + S +V +++ + S ++ S VH GK
Sbjct: 184 VTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKL 243
Query: 240 SLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA---HLPFRASKLT 296
+L+DLAG+ER ++S+ + E INKSL L + I AL A ++PFR SKLT
Sbjct: 244 NLVDLAGSER-INSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLT 302
Query: 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
+L+ S +GD S+T M I P + +LN+LR+A +V
Sbjct: 303 YLLQYSLVGD-SKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 39/270 (14%)
Query: 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
PL+++ +G FAYGQTGSGKT+TM G + G+ +F ++ +
Sbjct: 123 PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES------VGVIPRTVDLLFDSIRGYRN 176
Query: 159 RGLNLHVSASFFEIYSGKVFDLLAEKAK---LRVLEDGKQQVQIVGLTEQVVDSVEEVLK 215
G + A+F EIY+ ++DLL+ + K +R+ ++ K + + +TE+ V +
Sbjct: 177 LGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRH 236
Query: 216 LIQ-----------HGNSASINNICFSFLQVHGK-----------FSLIDLAGNERGADT 253
L+ GN S + + L++ G+ +L+DLAG+E
Sbjct: 237 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----- 291
Query: 254 SSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
S TRM E IN+SL L I AL +K H+P+R SKLT +L S +G S+T M
Sbjct: 292 -SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS-LGGNSKTLM 349
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKELAAT 342
+SP + S+ +LR+A V T
Sbjct: 350 FINVSPFQDCFQESVKSLRFAASVNSCKMT 379
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 39/270 (14%)
Query: 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
PL+++ +G FAYGQTGSGKT+TM G + G+ +F ++ +
Sbjct: 129 PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES------VGVIPRTVDLLFDSIRGYRN 182
Query: 159 RGLNLHVSASFFEIYSGKVFDLLAEKAK---LRVLEDGKQQVQIVGLTEQVVDSVEEVLK 215
G + A+F EIY+ ++DLL+ + K +R+ ++ K + + +TE+ V +
Sbjct: 183 LGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRH 242
Query: 216 LIQ-----------HGNSASINNICFSFLQVHGK-----------FSLIDLAGNERGADT 253
L+ GN S + + L++ G+ +L+DLAG+E
Sbjct: 243 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----- 297
Query: 254 SSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
S TRM E IN+SL L I AL +K H+P+R SKLT +L S +G S+T M
Sbjct: 298 -SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS-LGGNSKTLM 355
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKELAAT 342
+SP + S+ +LR+A V T
Sbjct: 356 FINVSPFQDCFQESVKSLRFAASVNSCKMT 385
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 39/270 (14%)
Query: 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
PL+++ +G FAYGQTGSGKT+TM G + G+ +F ++ +
Sbjct: 137 PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES------VGVIPRTVDLLFDSIRGYRN 190
Query: 159 RGLNLHVSASFFEIYSGKVFDLLAEKAK---LRVLEDGKQQVQIVGLTEQVVDSVEEVLK 215
G + A+F EIY+ ++DLL+ + K +R+ ++ K + + +TE+ V +
Sbjct: 191 LGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRH 250
Query: 216 LIQ-----------HGNSASINNICFSFLQVHGK-----------FSLIDLAGNERGADT 253
L+ GN S + + L++ G+ +L+DLAG+E
Sbjct: 251 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----- 305
Query: 254 SSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
S TRM E IN+SL L I AL +K H+P+R SKLT +L S +G S+T M
Sbjct: 306 -SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS-LGGNSKTLM 363
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKELAAT 342
+SP + S+ +LR+A V T
Sbjct: 364 FINVSPFQDCFQESVKSLRFAASVNSCKMT 393
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 129/270 (47%), Gaps = 39/270 (14%)
Query: 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
PL+++ +G FAYGQ+GSGKT+TM G + G+ +F ++ +
Sbjct: 126 PLIQSALDGYNICIFAYGQSGSGKTYTMDGVPES------VGVIPRTVDLLFDSIRGYRN 179
Query: 159 RGLNLHVSASFFEIYSGKVFDLLAEKAK---LRVLEDGKQQVQIVGLTEQVVDSVEEVLK 215
G + A+F EIY+ ++DLL+ + K +R+ ++ K + + +TE+ V +
Sbjct: 180 LGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRH 239
Query: 216 LIQ-----------HGNSASINNICFSFLQVHGK-----------FSLIDLAGNERGADT 253
L+ GN S + + L++ G+ +L+DLAG+E
Sbjct: 240 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----- 294
Query: 254 SSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
S TRM E IN+SL L I AL +K H+P+R SKLT +L S +G S+T M
Sbjct: 295 -SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS-LGGNSKTLM 352
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKELAAT 342
+SP + S+ +LR+A V T
Sbjct: 353 FINVSPFQDCFQESVKSLRFAASVNSCKMT 382
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 126/267 (47%), Gaps = 42/267 (15%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYR 159
L++ +G FAYGQTGSGKT TM G+ ++ K +F ++ K +
Sbjct: 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM--------SHPTNGMIPLSLKKIFNDIEELKEK 505
Query: 160 GLNLHVSASFFEIYSGKVFDLLAEK----AKLRVLED---GKQQVQIVGLTEQVVDSVEE 212
G + V F EIY+ + DLL K K + D GK V V + + S E+
Sbjct: 506 GWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTID--IKSPEQ 563
Query: 213 VLKLIQHGN-------------SASINNICFSFLQ---------VHGKFSLIDLAGNERG 250
+ ++ N S+ ++I LQ +G +LIDLAG+ER
Sbjct: 564 AITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSER- 622
Query: 251 ADTSSANRQTRMEGAEINKSLLALKECIRALGRK-GAHLPFRASKLTQVLRDSFIGDKSR 309
+ S A E INKSL L + I +L K G+H+P+R SKLT +L+ S +G S+
Sbjct: 623 LNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHS-LGGNSK 681
Query: 310 TCMIAMISPGMSSCEHSLNTLRYADRV 336
T M ISP ++N+LR+A +V
Sbjct: 682 TLMFVNISPLTKDLNETINSLRFATKV 708
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 127/275 (46%), Gaps = 50/275 (18%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTM--GGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
LV++ +G FAYGQTGSGKT TM GD GI +F + K
Sbjct: 132 LVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD----------GIIPSTISHIFNWINKLK 181
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLAEK----------AKLRVLEDGKQQVQIVGLTEQVV 207
+G + V+A F EIY+ + DLL K + D + + + V
Sbjct: 182 TKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVK 241
Query: 208 DSVEEVLKLI----------------QHGN-SASINNICFS------FLQVHGKFSLIDL 244
EE++++I +H + S SI I S +G +L+DL
Sbjct: 242 LESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDL 301
Query: 245 AGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA---HLPFRASKLTQVLRD 301
AG+ER + + R E INKSL AL + I ALG+ + H+PFR SKLT +L+
Sbjct: 302 AGSERINVSQVVGDRLR-ETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQY 360
Query: 302 SFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
S GD S+T M ISP S +LN+LR+A +V
Sbjct: 361 SLTGD-SKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 39/270 (14%)
Query: 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
PL+++ +G FAYGQTGSGKT+TM G + G+ +F ++ +
Sbjct: 126 PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES------VGVIPRTVDLLFDSIRGYRN 179
Query: 159 RGLNLHVSASFFEIYSGKVFDLLAEKAK---LRVLEDGKQQVQIVGLTEQVVDSVEEVLK 215
G + A+F EIY+ ++DLL+ + K +R+ ++ K + + +TE+ V +
Sbjct: 180 LGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRH 239
Query: 216 LIQ-----------HGNSASINNICFSFLQVHGK-----------FSLIDLAGNERGADT 253
L+ GN S + + L++ G+ +L+DLAG+E
Sbjct: 240 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----- 294
Query: 254 SSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
S TRM E I +SL L I AL +K H+P+R SKLT +L S +G S+T M
Sbjct: 295 -SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS-LGGNSKTLM 352
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKELAAT 342
+SP + S+ +LR+A V T
Sbjct: 353 FINVSPFQDCFQESVKSLRFAASVNSCKMT 382
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 125/272 (45%), Gaps = 36/272 (13%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYR 159
LV++ +G FAYGQTGSGKT TM G G Q +G+ A + +F + + +
Sbjct: 107 LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ--LEGLIPRALRHLFSVAQELSGQ 164
Query: 160 GLNLHVSASFFEIYSGKVFDLLAE--------KAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
G AS+ EIY+ V DLLA + ++R G +++ + V +
Sbjct: 165 GWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEK 224
Query: 212 EVLKLIQ------------HGNSASINNICFSF----------LQVHGKFSLIDLAGNER 249
EV L+ +S ++ F LQ SL+DLAG+ER
Sbjct: 225 EVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSER 284
Query: 250 ---GADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGD 306
G R+ E IN SL L I AL K +H+P+R SKLT +L++S +G
Sbjct: 285 LDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNS-LGG 343
Query: 307 KSRTCMIAMISPGMSSCEHSLNTLRYADRVKE 338
++ M ISP + SLN+LR+A +V +
Sbjct: 344 SAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 129/278 (46%), Gaps = 54/278 (19%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTM--GGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
L+++ +G FAYGQTGSGKT+TM GD GI +F +
Sbjct: 98 LIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD----------GIVPATINHIFSWIDKLA 147
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLE----DGKQQVQ---------IVGLTE 204
RG + VS F EIY+ + DLL A + D K +++ I +T
Sbjct: 148 ARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNITT 207
Query: 205 QVVDSVEEVLKLIQHGN------SASIN---NICFSFLQVH-------------GKFSLI 242
V+DS + V K+++ N S + N + S +H G +L+
Sbjct: 208 CVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLV 267
Query: 243 DLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL----GRKGAHLPFRASKLTQV 298
DLAG+ER + + R E INKSL L + I AL G+K H+PFR SKLT +
Sbjct: 268 DLAGSERLNSSMVVGERLR-ETQSINKSLSCLGDVIHALNSPDGQK-RHIPFRNSKLTYL 325
Query: 299 LRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
L+ S IG S+T M ISP ++N+LR+A +V
Sbjct: 326 LQYSLIG-SSKTLMFVNISPAALHLNETINSLRFASKV 362
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 124/255 (48%), Gaps = 18/255 (7%)
Query: 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
PLV + EG T AYGQTG+GK+++MG G+ GI A D+F+ + + +
Sbjct: 85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQE 144
Query: 159 RGLN-LHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKL- 216
+ + V ASF EIY+ K FDLL + ++ Q+ + L Q + +L+L
Sbjct: 145 NNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQA--DLHHILELG 202
Query: 217 -----IQHGNSASINNICFSFLQVHGK-------FSLIDLAGNERGADTSSANRQTRMEG 264
++ N S ++ + + +H K +++DLAG+E G + R EG
Sbjct: 203 TRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSE-GVRRTGHEGVARQEG 261
Query: 265 AEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCE 324
IN LL++ + + ++ +P+R S LT VL+ S +S +A ISP
Sbjct: 262 VNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTA-QSYLTFLACISPHQCDLS 320
Query: 325 HSLNTLRYADRVKEL 339
+L+TLR+ K+L
Sbjct: 321 ETLSTLRFGTSAKKL 335
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 126/282 (44%), Gaps = 64/282 (22%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTM--GGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
LV++ +G FAYGQTGSGKT TM GD GI +F + K
Sbjct: 76 LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----------GIIPSTISHIFNWINKLK 125
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQV----------- 206
+G + V+ F EIY+ + DL LR + K+ I GL ++
Sbjct: 126 TKGWDYKVNCEFIEIYNENIVDL------LRSDNNNKEDTSI-GLKHEIRHDQETKTTTI 178
Query: 207 -------VDSVEEVLKLIQHGN---------SASINNICFSFLQVH-------------G 237
++S E V +++ N S ++ S +H G
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG 238
Query: 238 KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA---HLPFRASK 294
+L+DLAG+ER + + R E INKSL L + I ALG+ + H+PFR SK
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 297
Query: 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
LT +L+ S GD S+T M ISP S +LN+LR+A +V
Sbjct: 298 LTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 123/256 (48%), Gaps = 18/256 (7%)
Query: 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
PLV + EG T AYGQTG+GK+++MG G+ GI A D+F+ + + +
Sbjct: 85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQE 144
Query: 159 RGLN-LHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKL- 216
+ + V ASF EIY+ K FDLL + ++ Q+ + L Q + +L+L
Sbjct: 145 NNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQA--DLHHILELG 202
Query: 217 -----IQHGNSASINNICFSFLQVHGK-------FSLIDLAGNERGADTSSANRQTRMEG 264
++ N S ++ + + +H K +++DLAG+E G + R EG
Sbjct: 203 TRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSE-GVRRTGHEGVARQEG 261
Query: 265 AEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCE 324
IN LL++ + + ++ +P+R S LT VL+ S +S +A ISP
Sbjct: 262 VNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTA-QSYLTFLACISPHQCDLS 320
Query: 325 HSLNTLRYADRVKELA 340
+L+TLR+ K A
Sbjct: 321 ETLSTLRFGTSAKAAA 336
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 126/282 (44%), Gaps = 64/282 (22%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTM--GGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
LV++ +G FAYGQTGSGKT TM GD GI +F + K
Sbjct: 87 LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----------GIIPSTISHIFNWINKLK 136
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQV----------- 206
+G + V+ F EIY+ + DLL R + K+ I GL ++
Sbjct: 137 TKGWDYKVNCEFIEIYNENIVDLL------RSDNNNKEDTSI-GLKHEIRHDQETKTTTI 189
Query: 207 -------VDSVEEVLKLIQHGN---------SASINNICFSFLQVH-------------G 237
++S E V +++ N S ++ S +H G
Sbjct: 190 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 249
Query: 238 KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA---HLPFRASK 294
+L+DLAG+ER + + R E INKSL L + I ALG+ + H+PFR SK
Sbjct: 250 TLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 308
Query: 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
LT +L+ S GD S+T M ISP S +LN+LR+A +V
Sbjct: 309 LTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 126/282 (44%), Gaps = 64/282 (22%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTM--GGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
LV++ +G FAYGQTGSGKT TM GD GI +F + K
Sbjct: 75 LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----------GIIPSTISHIFNWINKLK 124
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQV----------- 206
+G + V+ F EIY+ + DLL R + K+ I GL ++
Sbjct: 125 TKGWDYKVNCEFIEIYNENIVDLL------RSDNNNKEDTSI-GLKHEIRHDQETKTTTI 177
Query: 207 -------VDSVEEVLKLIQHGN---------SASINNICFSFLQVH-------------G 237
++S E V +++ N S ++ S +H G
Sbjct: 178 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 237
Query: 238 KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA---HLPFRASK 294
+L+DLAG+ER + + R E INKSL L + I ALG+ + H+PFR SK
Sbjct: 238 TLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 296
Query: 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
LT +L+ S GD S+T M ISP S +LN+LR+A +V
Sbjct: 297 LTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 125/282 (44%), Gaps = 64/282 (22%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTM--GGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
LV++ +G FAYGQTGSGKT TM GD GI +F + K
Sbjct: 76 LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----------GIIPSTISHIFNWINKLK 125
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQV----------- 206
+G + V+ F EIY+ + DLL R + K+ I GL ++
Sbjct: 126 TKGWDYKVNCEFIEIYNENIVDLL------RSDNNNKEDTSI-GLKHEIRHDQETKTTTI 178
Query: 207 -------VDSVEEVLKLIQHGN---------SASINNICFSFLQVH-------------G 237
++S E V +++ N S ++ S +H G
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 238
Query: 238 KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA---HLPFRASK 294
+L+DLAG+ER + + R E I KSL L + I ALG+ + H+PFR SK
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLR-ETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSK 297
Query: 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
LT +L+ S GD S+T M ISP S +LN+LR+A +V
Sbjct: 298 LTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 125/282 (44%), Gaps = 64/282 (22%)
Query: 100 LVKTIFEGGMATCFAYGQTGSGKTHTM--GGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
LV++ +G FAYGQTGSGKT TM GD GI +F + K
Sbjct: 76 LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----------GIIPSTISHIFNWINKLK 125
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQV----------- 206
+G + V+ F EIY+ + DLL R + K+ I GL ++
Sbjct: 126 TKGWDYKVNCEFIEIYNENIVDLL------RSDNNNKEDTSI-GLKHEIRHDQETKTTTI 178
Query: 207 -------VDSVEEVLKLIQHGN---------SASINNICFSFLQVH-------------G 237
++S E V +++ N S ++ S +H G
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 238
Query: 238 KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA---HLPFRASK 294
+L+DLAG+ R + + R E INKSL L + I ALG+ + H+PFR SK
Sbjct: 239 TLNLVDLAGSARINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 297
Query: 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
LT +L+ S GD S+T M ISP S +LN+LR+A +V
Sbjct: 298 LTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 94/193 (48%), Gaps = 29/193 (15%)
Query: 81 KVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCK-K 139
+VL T + AK +VK + EG T FAYGQT SGKTHTM +GK D +
Sbjct: 50 RVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTM----EGKLHDPQLM 105
Query: 140 GIYAMAAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQ 198
GI A D+F + S L H+ S+FEIY K+ DLL K L V ED +
Sbjct: 106 GIIPRIAHDIFDHIYSMD-ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPY 164
Query: 199 IVGLTEQVVDSVEEVLKLIQHGNS---ASINNICFS-------FL------------QVH 236
+ G TE+ V S EEV+ +I G + ++ N+ FL ++
Sbjct: 165 VKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLS 224
Query: 237 GKFSLIDLAGNER 249
GK L+DLAG+E+
Sbjct: 225 GKLYLVDLAGSEK 237
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 267 INKSLLALKECIRALGR-KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEH 325
INKSL AL I AL H+P+R SK+T++L+DS G+ RT ++ SP + +
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGN-CRTTIVICCSPSVFNEAE 62
Query: 326 SLNTLRYADRVKELAAT 342
+ +TL + R K + T
Sbjct: 63 TKSTLMFGQRAKTIKNT 79
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 268 NKSLLALKECIRALGR-KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHS 326
NKSL AL I AL H+P+R SK+T++L+DS +G RT ++ SP + + +
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDS-LGGNCRTTIVICCSPSVFNEAET 59
Query: 327 LNTLRYADRVKELAAT 342
+TL + R K + T
Sbjct: 60 KSTLMFGQRAKTIKNT 75
>pdb|2JNZ|A Chain A, Solution Structure Of Phl P 3, A Major Allergen From
Timothy Grass Pollen
Length = 108
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 59 ENSQYNNCRSMPLSGNKLSRCWKVLSLKNTV-PLDFRFSAKPLVKTIFEGGMATCFAYGQ 117
E Q+ + PL+ K W+V S K V P +FRF +K ++ +F+ + T F+ G+
Sbjct: 45 ELRQHGSEEWEPLT--KKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGK 102
Query: 118 T 118
T
Sbjct: 103 T 103
>pdb|3FT1|A Chain A, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|B Chain B, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|C Chain C, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|D Chain D, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT9|A Chain A, X-Ray Crystal Structure Of Pollen Allergen - Phl P 3
Length = 100
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 70 PLSGNKLSRCWKVLSLKNTV-PLDFRFSAKPLVKTIFEGGMATCFAYGQT 118
PL+ K W+V S K V P +FRF +K ++ +F+ + T F+ G+T
Sbjct: 45 PLT--KKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKT 92
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 107 GGMATCFAYGQTGSGKTHTMG--GDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYRGLNLH 164
G F YG G GKTH + G++ + + + +Y + K + L+ S K LN
Sbjct: 128 GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-- 185
Query: 165 VSASFFEIYSGKVFDLLAEKAKLRVLEDGKQ 195
F E Y KV LL + + + + G Q
Sbjct: 186 ---EFREKYRKKVDILLIDDVQFLIGKTGVQ 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,964,587
Number of Sequences: 62578
Number of extensions: 436497
Number of successful extensions: 1412
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 74
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)