Query psy23
Match_columns 386
No_of_seqs 226 out of 1373
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:10:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy23.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/23hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0246|consensus 100.0 8.9E-80 1.9E-84 611.8 29.6 272 74-345 257-547 (676)
2 KOG4280|consensus 100.0 6.4E-76 1.4E-80 598.9 18.6 276 73-356 50-353 (574)
3 KOG0243|consensus 100.0 3.6E-73 7.8E-78 601.4 20.8 314 33-353 42-404 (1041)
4 cd01373 KISc_KLP2_like Kinesin 100.0 1E-69 2.2E-74 536.0 30.9 264 74-339 40-337 (337)
5 cd01370 KISc_KIP3_like Kinesin 100.0 1.5E-69 3.2E-74 535.1 27.7 258 73-339 52-338 (338)
6 PLN03188 kinesin-12 family pro 100.0 3.6E-69 7.9E-74 576.1 29.7 277 73-351 130-446 (1320)
7 KOG0245|consensus 100.0 3.3E-70 7.2E-75 569.9 13.1 275 75-355 47-364 (1221)
8 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.5E-67 3.3E-72 523.8 31.5 270 73-347 46-351 (352)
9 cd01368 KISc_KIF23_like Kinesi 100.0 1.2E-67 2.7E-72 522.6 30.3 250 73-337 53-345 (345)
10 KOG0240|consensus 100.0 4.3E-69 9.3E-74 536.8 19.7 278 75-358 49-350 (607)
11 KOG0242|consensus 100.0 4.1E-69 8.9E-74 567.2 19.8 275 74-358 52-350 (675)
12 cd01367 KISc_KIF2_like Kinesin 100.0 6.4E-68 1.4E-72 520.3 26.9 254 74-337 50-322 (322)
13 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3E-67 6.6E-72 522.2 29.1 266 73-346 46-356 (356)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 1.3E-66 2.9E-71 514.9 30.8 296 41-340 2-341 (341)
15 cd01376 KISc_KID_like Kinesin 100.0 5.4E-66 1.2E-70 506.2 29.3 253 74-337 46-319 (319)
16 cd01371 KISc_KIF3 Kinesin moto 100.0 1.1E-65 2.3E-70 506.9 30.1 260 73-339 46-333 (333)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 1.5E-65 3.2E-70 503.5 29.9 256 73-339 38-321 (321)
18 cd01375 KISc_KIF9_like Kinesin 100.0 1.7E-65 3.7E-70 505.6 29.6 257 73-337 46-334 (334)
19 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4.2E-65 9.1E-70 501.1 30.1 261 73-339 41-325 (325)
20 cd01366 KISc_C_terminal Kinesi 100.0 7.8E-64 1.7E-68 492.9 29.2 260 73-341 43-328 (329)
21 PF00225 Kinesin: Kinesin moto 100.0 1.6E-64 3.5E-69 498.6 23.2 264 71-339 37-335 (335)
22 smart00129 KISc Kinesin motor, 100.0 8.5E-62 1.8E-66 479.4 30.1 266 72-346 43-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 1.7E-61 3.7E-66 475.8 31.0 257 73-337 43-328 (328)
24 KOG0241|consensus 100.0 3E-63 6.5E-68 510.6 17.0 276 72-355 50-367 (1714)
25 KOG0239|consensus 100.0 1.7E-62 3.8E-67 515.3 21.5 266 76-350 361-651 (670)
26 KOG0244|consensus 100.0 3.9E-58 8.4E-63 480.4 8.1 284 66-356 23-334 (913)
27 KOG0247|consensus 100.0 3.4E-56 7.4E-61 454.3 17.9 278 74-359 80-456 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 3.7E-55 8.1E-60 456.8 22.3 265 74-347 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.8E-41 4E-46 308.2 15.5 154 92-318 8-186 (186)
30 PRK06893 DNA replication initi 94.2 0.044 9.4E-07 51.3 3.5 53 70-128 6-58 (229)
31 PRK06620 hypothetical protein; 93.6 0.035 7.5E-07 51.6 1.7 55 69-127 5-62 (214)
32 PF00308 Bac_DnaA: Bacterial d 93.4 0.031 6.7E-07 52.1 1.0 51 75-128 3-53 (219)
33 COG2805 PilT Tfp pilus assembl 93.0 0.048 1E-06 53.1 1.7 31 97-127 113-143 (353)
34 COG0556 UvrB Helicase subunit 93.0 0.2 4.3E-06 52.2 6.1 93 75-178 3-101 (663)
35 PRK09087 hypothetical protein; 92.1 0.12 2.5E-06 48.5 2.9 54 68-127 9-62 (226)
36 PRK05642 DNA replication initi 91.8 0.14 2.9E-06 48.2 3.0 52 69-127 8-63 (234)
37 PRK08084 DNA replication initi 90.7 0.21 4.5E-06 47.0 3.1 53 70-128 12-64 (235)
38 COG2804 PulE Type II secretory 90.3 0.12 2.5E-06 53.6 1.0 31 98-128 247-277 (500)
39 COG5059 KIP1 Kinesin-like prot 89.2 0.0022 4.7E-08 68.1 -12.9 193 75-282 353-566 (568)
40 PRK12377 putative replication 88.9 0.33 7.1E-06 46.2 2.9 50 77-128 71-120 (248)
41 PRK14086 dnaA chromosomal repl 88.9 0.36 7.8E-06 51.6 3.5 52 74-128 282-333 (617)
42 PRK14088 dnaA chromosomal repl 88.4 0.26 5.6E-06 50.8 2.0 51 73-128 98-149 (440)
43 TIGR03420 DnaA_homol_Hda DnaA 88.4 0.43 9.3E-06 43.9 3.3 49 72-126 7-55 (226)
44 PRK08903 DnaA regulatory inact 88.2 0.4 8.7E-06 44.4 3.0 54 69-127 7-60 (227)
45 PRK08727 hypothetical protein; 87.8 0.4 8.7E-06 45.0 2.7 51 70-128 9-60 (233)
46 PRK08116 hypothetical protein; 87.7 0.37 8.1E-06 46.3 2.5 51 75-127 80-132 (268)
47 PRK06526 transposase; Provisio 87.7 0.25 5.3E-06 47.2 1.2 45 79-128 73-117 (254)
48 PF04851 ResIII: Type III rest 87.6 0.29 6.4E-06 42.7 1.6 31 98-128 13-44 (184)
49 cd00009 AAA The AAA+ (ATPases 87.5 0.36 7.9E-06 39.8 2.0 28 99-126 9-36 (151)
50 PF13245 AAA_19: Part of AAA d 87.3 0.27 5.9E-06 37.9 1.0 27 101-128 3-29 (76)
51 TIGR00362 DnaA chromosomal rep 87.2 0.33 7.2E-06 49.3 1.9 51 74-127 104-154 (405)
52 TIGR02928 orc1/cdc6 family rep 85.5 0.62 1.3E-05 46.2 2.8 26 101-126 31-57 (365)
53 PRK00149 dnaA chromosomal repl 85.1 0.47 1E-05 49.0 1.8 52 73-127 115-166 (450)
54 COG1474 CDC6 Cdc6-related prot 84.7 0.66 1.4E-05 46.7 2.5 26 101-126 33-59 (366)
55 PRK07952 DNA replication prote 84.6 0.8 1.7E-05 43.5 3.0 51 76-128 68-118 (244)
56 PRK08181 transposase; Validate 84.2 0.86 1.9E-05 43.9 3.0 21 106-128 105-125 (269)
57 PRK14087 dnaA chromosomal repl 84.1 0.52 1.1E-05 48.8 1.6 49 76-127 111-159 (450)
58 COG0593 DnaA ATPase involved i 84.0 0.56 1.2E-05 47.8 1.7 50 72-127 79-131 (408)
59 PRK10436 hypothetical protein; 84.0 0.47 1E-05 49.3 1.2 29 100-128 209-237 (462)
60 PRK06835 DNA replication prote 82.8 0.74 1.6E-05 45.7 2.0 31 97-128 172-202 (329)
61 PF13604 AAA_30: AAA domain; P 82.8 0.59 1.3E-05 42.6 1.2 29 99-127 8-36 (196)
62 PRK00411 cdc6 cell division co 82.7 0.97 2.1E-05 45.4 2.9 25 102-126 47-72 (394)
63 cd00046 DEXDc DEAD-like helica 82.7 0.43 9.3E-06 38.9 0.2 17 112-128 3-19 (144)
64 TIGR02533 type_II_gspE general 82.7 0.63 1.4E-05 48.6 1.5 29 100-128 233-261 (486)
65 TIGR02538 type_IV_pilB type IV 82.6 0.58 1.3E-05 49.8 1.2 29 100-128 307-335 (564)
66 KOG0989|consensus 82.3 0.91 2E-05 44.4 2.3 43 85-127 32-75 (346)
67 TIGR01420 pilT_fam pilus retra 81.6 0.69 1.5E-05 46.1 1.3 29 99-127 112-140 (343)
68 TIGR02525 plasmid_TraJ plasmid 81.3 0.76 1.6E-05 46.4 1.5 28 99-127 140-167 (372)
69 PRK08939 primosomal protein Dn 81.2 0.96 2.1E-05 44.4 2.1 51 77-128 124-175 (306)
70 PF05673 DUF815: Protein of un 81.0 1.3 2.8E-05 42.1 2.8 118 73-231 20-145 (249)
71 PF13401 AAA_22: AAA domain; P 80.7 0.44 9.4E-06 39.6 -0.4 18 109-126 4-21 (131)
72 COG5008 PilU Tfp pilus assembl 80.5 1 2.3E-05 43.3 2.0 54 73-127 81-145 (375)
73 cd01129 PulE-GspE PulE/GspE Th 80.5 0.91 2E-05 43.5 1.7 28 100-127 71-98 (264)
74 smart00382 AAA ATPases associa 80.4 0.56 1.2E-05 38.1 0.1 18 110-127 3-20 (148)
75 cd01131 PilT Pilus retraction 80.4 0.56 1.2E-05 42.8 0.2 18 110-127 2-19 (198)
76 TIGR02524 dot_icm_DotB Dot/Icm 80.4 0.81 1.8E-05 45.9 1.3 25 103-127 128-152 (358)
77 PF00437 T2SE: Type II/IV secr 80.2 0.66 1.4E-05 44.2 0.6 29 98-126 113-144 (270)
78 PF01935 DUF87: Domain of unkn 80.2 0.56 1.2E-05 43.4 0.1 16 111-126 25-40 (229)
79 PF00270 DEAD: DEAD/DEAH box h 80.1 0.79 1.7E-05 39.6 1.0 27 100-128 7-33 (169)
80 TIGR03015 pepcterm_ATPase puta 79.8 1.1 2.4E-05 42.3 1.9 25 102-126 36-60 (269)
81 PRK12422 chromosomal replicati 79.6 1.2 2.6E-05 46.0 2.3 52 73-127 104-159 (445)
82 PF01695 IstB_IS21: IstB-like 79.2 1 2.3E-05 40.5 1.5 20 109-128 47-66 (178)
83 PF01637 Arch_ATPase: Archaeal 77.5 0.93 2E-05 41.1 0.7 29 98-126 9-37 (234)
84 PF12846 AAA_10: AAA-like doma 77.3 0.78 1.7E-05 43.5 0.1 19 109-127 1-19 (304)
85 COG1484 DnaC DNA replication p 76.8 2.1 4.5E-05 40.9 2.8 51 75-128 74-124 (254)
86 PF05970 PIF1: PIF1-like helic 76.7 1.5 3.2E-05 44.0 2.0 37 86-126 3-39 (364)
87 PF00004 AAA: ATPase family as 76.2 0.75 1.6E-05 37.9 -0.3 15 112-126 1-15 (132)
88 PRK06921 hypothetical protein; 76.0 2.2 4.9E-05 40.9 2.9 32 97-128 102-136 (266)
89 PRK09183 transposase/IS protei 76.0 1.6 3.5E-05 41.7 1.9 45 79-128 77-121 (259)
90 PHA00729 NTP-binding motif con 75.4 1.9 4.1E-05 40.5 2.1 31 97-127 5-35 (226)
91 PF13479 AAA_24: AAA domain 75.1 1.1 2.3E-05 41.4 0.4 20 109-128 3-22 (213)
92 PRK12402 replication factor C 74.3 2 4.3E-05 41.9 2.1 22 106-127 33-54 (337)
93 PF13086 AAA_11: AAA domain; P 74.0 1.4 3.1E-05 39.9 0.9 28 100-128 9-36 (236)
94 TIGR02782 TrbB_P P-type conjug 74.0 1.4 3E-05 43.1 0.9 29 98-127 122-150 (299)
95 PF00448 SRP54: SRP54-type pro 73.9 0.97 2.1E-05 41.4 -0.2 17 111-127 3-19 (196)
96 PRK13894 conjugal transfer ATP 73.6 1.7 3.6E-05 43.0 1.4 27 99-126 139-165 (319)
97 PF00580 UvrD-helicase: UvrD/R 72.9 1.3 2.9E-05 42.2 0.5 26 103-128 7-32 (315)
98 PF02562 PhoH: PhoH-like prote 72.3 2.5 5.5E-05 39.1 2.2 25 101-127 13-37 (205)
99 PF06309 Torsin: Torsin; Inte 72.1 3.3 7.2E-05 35.3 2.6 40 97-152 37-80 (127)
100 cd01130 VirB11-like_ATPase Typ 71.7 2.1 4.6E-05 38.4 1.5 28 98-126 15-42 (186)
101 PTZ00112 origin recognition co 71.4 2.9 6.3E-05 46.8 2.6 27 100-126 770-798 (1164)
102 PF13207 AAA_17: AAA domain; P 71.1 1.5 3.3E-05 35.9 0.4 16 111-126 1-16 (121)
103 PHA02244 ATPase-like protein 70.2 1.2 2.5E-05 45.0 -0.6 32 93-126 105-136 (383)
104 smart00487 DEXDc DEAD-like hel 69.8 2.7 5.9E-05 36.4 1.7 28 100-128 16-43 (201)
105 PF13671 AAA_33: AAA domain; P 69.6 1.6 3.5E-05 36.8 0.2 15 112-126 2-16 (143)
106 PRK13833 conjugal transfer pro 69.6 2.2 4.8E-05 42.3 1.2 28 99-127 135-162 (323)
107 PHA02544 44 clamp loader, smal 69.5 2.8 6.1E-05 40.7 1.9 22 106-127 39-61 (316)
108 COG4962 CpaF Flp pilus assembl 69.4 2.2 4.9E-05 42.4 1.2 29 98-127 163-191 (355)
109 KOG2543|consensus 69.2 2.7 5.9E-05 42.4 1.7 18 109-126 30-47 (438)
110 PRK06547 hypothetical protein; 68.9 3.4 7.3E-05 37.0 2.1 29 98-126 4-32 (172)
111 PF13191 AAA_16: AAA ATPase do 68.8 1 2.3E-05 39.5 -1.2 21 106-126 21-41 (185)
112 PRK03992 proteasome-activating 68.6 2 4.4E-05 43.5 0.7 51 76-126 127-182 (389)
113 PF00910 RNA_helicase: RNA hel 68.2 1.5 3.3E-05 35.7 -0.2 15 112-126 1-15 (107)
114 PF03215 Rad17: Rad17 cell cyc 68.0 2.7 5.9E-05 44.3 1.5 31 96-126 30-62 (519)
115 PRK12723 flagellar biosynthesi 67.9 4.2 9E-05 41.4 2.8 19 109-127 174-192 (388)
116 TIGR00631 uvrb excinuclease AB 67.5 6 0.00013 43.0 4.0 88 81-177 6-97 (655)
117 TIGR01242 26Sp45 26S proteasom 67.0 1.7 3.6E-05 43.6 -0.3 51 76-126 118-173 (364)
118 PF01580 FtsK_SpoIIIE: FtsK/Sp 66.9 1.6 3.4E-05 39.7 -0.4 17 111-127 40-56 (205)
119 PRK13900 type IV secretion sys 66.6 3.3 7.1E-05 41.2 1.7 29 98-127 150-178 (332)
120 KOG0926|consensus 64.6 4.2 9.1E-05 44.7 2.1 18 109-126 271-288 (1172)
121 TIGR03499 FlhF flagellar biosy 64.5 2.3 5.1E-05 41.1 0.2 18 111-128 196-213 (282)
122 PLN00020 ribulose bisphosphate 64.2 5 0.00011 40.7 2.5 51 75-125 110-164 (413)
123 PRK13851 type IV secretion sys 64.1 2.3 5E-05 42.5 0.1 28 99-127 153-180 (344)
124 KOG0953|consensus 63.9 7.1 0.00015 41.2 3.5 44 112-155 194-237 (700)
125 PF07728 AAA_5: AAA domain (dy 63.7 2 4.4E-05 36.2 -0.4 15 112-126 2-16 (139)
126 cd00268 DEADc DEAD-box helicas 63.6 4.1 9E-05 36.5 1.7 24 100-125 29-52 (203)
127 PRK13764 ATPase; Provisional 63.2 3.3 7.2E-05 44.4 1.1 21 107-127 255-275 (602)
128 PLN03025 replication factor C 62.9 4.8 0.0001 39.4 2.1 22 107-128 32-53 (319)
129 COG1223 Predicted ATPase (AAA+ 62.5 2.8 6E-05 40.4 0.3 47 109-155 151-208 (368)
130 PTZ00424 helicase 45; Provisio 62.1 4 8.7E-05 40.9 1.4 27 98-126 56-82 (401)
131 PTZ00014 myosin-A; Provisional 62.0 11 0.00025 42.0 5.0 21 106-126 180-200 (821)
132 PTZ00454 26S protease regulato 62.0 2.6 5.7E-05 42.9 0.1 51 76-126 141-196 (398)
133 KOG0727|consensus 62.0 7 0.00015 37.6 2.9 125 33-157 94-248 (408)
134 TIGR02881 spore_V_K stage V sp 62.0 2.8 6E-05 39.9 0.2 17 110-126 43-59 (261)
135 PF13238 AAA_18: AAA domain; P 61.9 2.8 6.1E-05 34.2 0.2 15 112-126 1-15 (129)
136 PF07724 AAA_2: AAA domain (Cd 61.8 2.7 5.9E-05 37.6 0.1 17 110-126 4-20 (171)
137 TIGR02237 recomb_radB DNA repa 61.6 4 8.8E-05 37.0 1.2 25 102-126 2-29 (209)
138 cd01379 MYSc_type_III Myosin m 61.4 5.9 0.00013 43.0 2.6 36 90-126 67-103 (653)
139 PF06414 Zeta_toxin: Zeta toxi 60.7 3.2 6.9E-05 37.7 0.4 18 109-126 15-32 (199)
140 COG1201 Lhr Lhr-like helicases 60.7 7.9 0.00017 43.0 3.4 27 99-127 29-55 (814)
141 PRK14722 flhF flagellar biosyn 60.6 3.2 6.9E-05 42.0 0.4 19 109-127 137-155 (374)
142 PF00063 Myosin_head: Myosin h 60.5 4.7 0.0001 44.0 1.7 39 88-126 64-102 (689)
143 PF00735 Septin: Septin; Inte 60.3 2.2 4.7E-05 41.4 -0.8 21 106-126 1-21 (281)
144 PRK14961 DNA polymerase III su 60.2 5 0.00011 40.2 1.7 27 100-126 28-55 (363)
145 PRK00440 rfc replication facto 60.1 5.6 0.00012 38.3 2.0 21 106-126 35-55 (319)
146 COG1419 FlhF Flagellar GTP-bin 59.4 6.4 0.00014 40.1 2.3 37 199-249 258-294 (407)
147 PRK10536 hypothetical protein; 59.4 5.4 0.00012 38.3 1.7 42 76-127 51-92 (262)
148 PRK06067 flagellar accessory p 59.0 5.5 0.00012 37.0 1.7 31 96-126 9-42 (234)
149 PRK11776 ATP-dependent RNA hel 58.7 6.3 0.00014 40.6 2.2 25 99-125 33-57 (460)
150 KOG1514|consensus 58.4 11 0.00025 40.8 4.0 43 99-157 410-454 (767)
151 COG1219 ClpX ATP-dependent pro 58.3 4.2 9E-05 40.3 0.7 18 108-125 96-113 (408)
152 cd01120 RecA-like_NTPases RecA 57.9 3.4 7.3E-05 35.0 0.0 16 112-127 2-17 (165)
153 PRK11192 ATP-dependent RNA hel 57.7 5.4 0.00012 40.7 1.5 25 99-125 30-54 (434)
154 PRK10416 signal recognition pa 57.3 6.6 0.00014 38.8 2.0 18 110-127 115-132 (318)
155 COG1125 OpuBA ABC-type proline 57.1 3.7 8.1E-05 39.5 0.2 34 308-349 186-219 (309)
156 PRK04195 replication factor C 57.0 6.1 0.00013 41.2 1.8 30 97-126 26-56 (482)
157 PRK04328 hypothetical protein; 56.6 7.3 0.00016 36.9 2.1 29 97-125 8-39 (249)
158 PF02456 Adeno_IVa2: Adenoviru 56.6 3.4 7.4E-05 40.6 -0.2 101 112-222 90-214 (369)
159 PF05729 NACHT: NACHT domain 56.6 4.2 9.1E-05 34.7 0.4 16 111-126 2-17 (166)
160 PRK04837 ATP-dependent RNA hel 56.3 5.6 0.00012 40.5 1.4 25 100-126 38-62 (423)
161 PRK10590 ATP-dependent RNA hel 55.8 6.5 0.00014 40.6 1.7 26 99-126 30-55 (456)
162 PF06048 DUF927: Domain of unk 55.4 8.1 0.00018 37.4 2.2 29 97-126 182-210 (286)
163 PRK09361 radB DNA repair and r 55.3 8.4 0.00018 35.4 2.2 30 97-126 8-40 (225)
164 CHL00081 chlI Mg-protoporyphyr 55.2 4.3 9.4E-05 40.6 0.3 43 76-126 13-55 (350)
165 TIGR00635 ruvB Holliday juncti 54.8 8.5 0.00018 37.1 2.3 16 111-126 32-47 (305)
166 TIGR01618 phage_P_loop phage n 54.8 3.9 8.4E-05 38.3 -0.1 20 109-128 12-31 (220)
167 PF12775 AAA_7: P-loop contain 54.8 5.4 0.00012 38.4 0.9 26 100-126 25-50 (272)
168 PRK14974 cell division protein 54.3 12 0.00026 37.3 3.3 19 109-127 140-158 (336)
169 smart00242 MYSc Myosin. Large 54.3 11 0.00023 41.3 3.1 38 89-126 72-109 (677)
170 PRK13342 recombination factor 54.1 6.2 0.00013 40.3 1.2 27 100-126 27-53 (413)
171 TIGR00348 hsdR type I site-spe 54.0 8 0.00017 42.2 2.1 32 96-128 246-282 (667)
172 TIGR02788 VirB11 P-type DNA tr 53.9 8 0.00017 37.8 1.9 29 97-126 133-161 (308)
173 PF13555 AAA_29: P-loop contai 53.8 4.3 9.4E-05 30.2 0.0 15 112-126 26-40 (62)
174 PRK11448 hsdR type I restricti 53.7 6.5 0.00014 45.4 1.4 30 98-128 423-452 (1123)
175 TIGR00376 DNA helicase, putati 53.6 6.8 0.00015 42.5 1.5 28 100-128 165-192 (637)
176 PF10236 DAP3: Mitochondrial r 53.5 7.1 0.00015 38.3 1.5 24 105-128 19-42 (309)
177 cd01123 Rad51_DMC1_radA Rad51_ 53.3 7.9 0.00017 35.7 1.7 30 97-126 4-36 (235)
178 PRK00771 signal recognition pa 52.9 13 0.00027 38.5 3.2 19 109-127 95-113 (437)
179 KOG0335|consensus 52.8 6.3 0.00014 40.9 1.0 64 105-175 109-189 (482)
180 cd01383 MYSc_type_VIII Myosin 52.4 13 0.00028 40.7 3.4 37 89-126 72-109 (677)
181 PF13173 AAA_14: AAA domain 52.4 5.2 0.00011 33.5 0.3 17 111-127 4-20 (128)
182 cd01394 radB RadB. The archaea 52.2 9.1 0.0002 35.0 1.9 29 98-126 5-36 (218)
183 COG3598 RepA RecA-family ATPas 52.0 7.8 0.00017 38.5 1.4 63 77-151 58-121 (402)
184 PRK11331 5-methylcytosine-spec 51.8 10 0.00022 39.3 2.4 28 97-126 184-211 (459)
185 TIGR01359 UMP_CMP_kin_fam UMP- 51.7 5.9 0.00013 35.0 0.6 15 112-126 2-16 (183)
186 TIGR00614 recQ_fam ATP-depende 51.4 8.9 0.00019 39.7 1.9 26 98-125 17-42 (470)
187 COG1126 GlnQ ABC-type polar am 51.3 4.8 0.0001 37.7 -0.1 24 103-126 16-45 (240)
188 cd01384 MYSc_type_XI Myosin mo 51.3 13 0.00028 40.6 3.2 37 89-126 68-105 (674)
189 COG1222 RPT1 ATP-dependent 26S 51.3 6.3 0.00014 39.6 0.7 45 110-157 186-244 (406)
190 cd01393 recA_like RecA is a b 51.1 11 0.00023 34.5 2.2 31 97-127 4-37 (226)
191 PRK09270 nucleoside triphospha 50.7 12 0.00026 34.7 2.5 37 90-126 13-50 (229)
192 cd01381 MYSc_type_VII Myosin m 50.6 14 0.0003 40.4 3.3 37 89-126 66-103 (671)
193 cd03274 ABC_SMC4_euk Eukaryoti 50.6 5.3 0.00012 36.8 0.1 15 112-126 28-42 (212)
194 PRK07261 topology modulation p 50.6 6.3 0.00014 35.0 0.5 15 112-126 3-17 (171)
195 cd01385 MYSc_type_IX Myosin mo 50.5 13 0.00029 40.7 3.1 36 90-126 75-111 (692)
196 TIGR02640 gas_vesic_GvpN gas v 50.4 12 0.00026 35.6 2.5 30 95-126 9-38 (262)
197 cd02021 GntK Gluconate kinase 50.3 6.1 0.00013 33.7 0.4 14 112-125 2-15 (150)
198 COG5019 CDC3 Septin family pro 50.3 7.1 0.00015 39.2 0.9 21 106-126 20-40 (373)
199 cd01126 TraG_VirD4 The TraG/Tr 50.2 8.7 0.00019 38.6 1.5 16 112-127 2-17 (384)
200 KOG1547|consensus 50.2 17 0.00036 34.8 3.2 34 93-126 29-63 (336)
201 cd01377 MYSc_type_II Myosin mo 50.1 13 0.00028 40.7 3.0 38 88-126 70-108 (693)
202 cd01850 CDC_Septin CDC/Septin. 50.0 5.9 0.00013 38.2 0.3 21 106-126 1-21 (276)
203 cd00124 MYSc Myosin motor doma 49.8 13 0.00029 40.5 3.0 37 89-126 66-103 (679)
204 PRK00131 aroK shikimate kinase 49.7 7 0.00015 33.8 0.7 17 110-126 5-21 (175)
205 PF05496 RuvB_N: Holliday junc 49.6 18 0.00039 34.1 3.4 40 85-125 25-66 (233)
206 KOG3859|consensus 49.5 8 0.00017 37.6 1.1 29 98-126 30-59 (406)
207 COG3829 RocR Transcriptional r 49.5 11 0.00023 39.8 2.1 45 73-123 238-282 (560)
208 cd01378 MYSc_type_I Myosin mot 49.5 15 0.00032 40.2 3.3 37 89-126 66-103 (674)
209 PRK08118 topology modulation p 49.4 6.7 0.00015 34.7 0.6 13 112-124 4-16 (167)
210 TIGR02903 spore_lon_C ATP-depe 49.4 10 0.00022 40.9 2.1 42 77-126 151-192 (615)
211 cd01387 MYSc_type_XV Myosin mo 49.4 15 0.00032 40.2 3.3 37 89-126 67-104 (677)
212 cd01382 MYSc_type_VI Myosin mo 49.3 14 0.00029 40.8 2.9 36 90-126 72-108 (717)
213 KOG1803|consensus 49.3 13 0.00027 39.7 2.6 19 110-128 202-220 (649)
214 cd00464 SK Shikimate kinase (S 49.2 6.8 0.00015 33.3 0.5 16 111-126 1-16 (154)
215 KOG0340|consensus 49.1 5.6 0.00012 39.8 -0.0 48 98-147 35-82 (442)
216 PHA02624 large T antigen; Prov 49.1 13 0.00028 40.0 2.6 29 98-126 418-448 (647)
217 smart00763 AAA_PrkA PrkA AAA d 48.7 17 0.00037 36.6 3.3 66 81-151 52-142 (361)
218 PRK06696 uridine kinase; Valid 48.7 14 0.00031 34.1 2.6 29 97-125 7-38 (223)
219 KOG2373|consensus 48.7 15 0.00032 36.9 2.8 31 98-128 260-292 (514)
220 PF10923 DUF2791: P-loop Domai 48.6 12 0.00026 38.4 2.2 30 97-126 37-66 (416)
221 TIGR01313 therm_gnt_kin carboh 48.4 6.3 0.00014 34.2 0.2 14 112-125 1-14 (163)
222 PRK05703 flhF flagellar biosyn 48.3 6.3 0.00014 40.5 0.2 17 111-127 223-239 (424)
223 KOG2228|consensus 47.9 17 0.00037 36.4 3.1 140 82-232 26-202 (408)
224 TIGR01817 nifA Nif-specific re 47.2 10 0.00022 40.0 1.5 45 75-125 191-235 (534)
225 KOG1532|consensus 47.0 21 0.00046 34.7 3.5 17 109-125 19-35 (366)
226 cd01380 MYSc_type_V Myosin mot 46.9 16 0.00034 40.1 3.0 36 90-126 67-103 (691)
227 TIGR02655 circ_KaiC circadian 46.7 22 0.00048 37.1 3.9 28 98-125 7-37 (484)
228 cd01428 ADK Adenylate kinase ( 46.6 7.9 0.00017 34.4 0.6 15 112-126 2-16 (194)
229 TIGR03819 heli_sec_ATPase heli 46.6 11 0.00024 37.6 1.6 29 97-126 167-195 (340)
230 TIGR01241 FtsH_fam ATP-depende 46.5 6.6 0.00014 41.1 -0.0 50 76-126 51-105 (495)
231 PF13476 AAA_23: AAA domain; P 46.4 6.5 0.00014 34.7 -0.1 17 110-126 20-36 (202)
232 PRK00080 ruvB Holliday junctio 46.4 7.3 0.00016 38.3 0.3 18 110-127 52-69 (328)
233 cd00820 PEPCK_HprK Phosphoenol 46.1 7.5 0.00016 32.2 0.3 16 111-126 17-32 (107)
234 CHL00181 cbbX CbbX; Provisiona 46.0 7.7 0.00017 37.6 0.4 15 112-126 62-76 (287)
235 PHA02653 RNA helicase NPH-II; 46.0 15 0.00031 40.2 2.5 26 98-125 170-195 (675)
236 PF03668 ATP_bind_2: P-loop AT 45.6 19 0.00041 35.0 3.0 16 111-126 3-18 (284)
237 TIGR03881 KaiC_arch_4 KaiC dom 45.5 14 0.00029 34.1 2.0 29 98-126 6-37 (229)
238 TIGR02322 phosphon_PhnN phosph 45.5 7.1 0.00015 34.4 0.0 16 111-126 3-18 (179)
239 PRK04537 ATP-dependent RNA hel 45.4 11 0.00024 40.3 1.5 25 100-126 39-63 (572)
240 cd01124 KaiC KaiC is a circadi 45.0 9.4 0.0002 33.6 0.8 15 112-126 2-16 (187)
241 PRK06995 flhF flagellar biosyn 44.8 7.6 0.00016 40.6 0.1 18 110-127 257-274 (484)
242 PRK11889 flhF flagellar biosyn 44.5 18 0.00039 37.1 2.7 18 110-127 242-259 (436)
243 PRK13341 recombination factor 44.5 13 0.00027 41.0 1.8 22 106-127 49-70 (725)
244 PRK06217 hypothetical protein; 44.4 8.6 0.00019 34.3 0.4 14 112-125 4-17 (183)
245 TIGR02236 recomb_radA DNA repa 44.3 14 0.00031 35.9 2.0 31 97-127 80-113 (310)
246 COG0606 Predicted ATPase with 44.3 13 0.00029 38.6 1.8 26 100-126 190-215 (490)
247 PRK14723 flhF flagellar biosyn 44.2 18 0.00039 40.0 2.9 18 110-127 186-203 (767)
248 TIGR01243 CDC48 AAA family ATP 44.1 9.6 0.00021 42.0 0.8 17 110-126 213-229 (733)
249 TIGR00064 ftsY signal recognit 44.1 19 0.00042 34.6 2.8 18 110-127 73-90 (272)
250 cd01127 TrwB Bacterial conjuga 44.0 7.7 0.00017 39.6 0.1 18 109-126 42-59 (410)
251 PLN00206 DEAD-box ATP-dependen 43.8 16 0.00035 38.5 2.4 25 99-125 150-174 (518)
252 PRK11634 ATP-dependent RNA hel 43.6 15 0.00032 39.9 2.1 25 100-126 36-60 (629)
253 KOG0739|consensus 43.6 9.6 0.00021 37.5 0.6 80 78-157 131-225 (439)
254 TIGR03158 cas3_cyano CRISPR-as 43.4 16 0.00036 36.4 2.3 27 100-126 5-31 (357)
255 TIGR02880 cbbX_cfxQ probable R 43.2 9 0.0002 37.0 0.4 16 111-126 60-75 (284)
256 COG2256 MGS1 ATPase related to 42.9 13 0.00027 38.0 1.4 37 88-125 28-64 (436)
257 PRK14531 adenylate kinase; Pro 42.8 9.9 0.00021 33.9 0.6 16 111-126 4-19 (183)
258 PTZ00361 26 proteosome regulat 42.5 8 0.00017 40.0 -0.1 16 111-126 219-234 (438)
259 PHA01747 putative ATP-dependen 42.3 9.6 0.00021 38.5 0.4 30 97-126 178-207 (425)
260 KOG0729|consensus 42.2 12 0.00027 36.2 1.1 47 111-157 213-270 (435)
261 COG3842 PotA ABC-type spermidi 42.2 8.4 0.00018 38.6 -0.0 13 114-126 36-48 (352)
262 PRK08233 hypothetical protein; 42.2 9.8 0.00021 33.3 0.4 15 112-126 6-20 (182)
263 PF00931 NB-ARC: NB-ARC domain 41.8 21 0.00045 33.7 2.7 30 97-126 5-36 (287)
264 TIGR01360 aden_kin_iso1 adenyl 41.8 11 0.00023 33.3 0.6 16 111-126 5-20 (188)
265 PF07693 KAP_NTPase: KAP famil 41.8 14 0.00031 35.6 1.6 20 107-126 18-37 (325)
266 KOG0652|consensus 41.5 12 0.00025 36.3 0.8 15 111-125 207-221 (424)
267 PRK10867 signal recognition pa 41.5 21 0.00045 36.9 2.8 19 109-127 100-118 (433)
268 PRK05580 primosome assembly pr 41.3 16 0.00035 39.9 2.0 27 101-127 153-180 (679)
269 cd01386 MYSc_type_XVIII Myosin 41.3 21 0.00046 39.6 2.9 37 89-126 66-103 (767)
270 cd02020 CMPK Cytidine monophos 41.2 11 0.00024 31.6 0.6 15 112-126 2-16 (147)
271 TIGR02902 spore_lonB ATP-depen 41.0 20 0.00043 38.0 2.6 42 77-126 62-103 (531)
272 TIGR02746 TraC-F-type type-IV 41.0 9.3 0.0002 42.3 0.1 18 109-126 430-447 (797)
273 CHL00195 ycf46 Ycf46; Provisio 41.0 9.2 0.0002 40.1 0.1 17 110-126 260-276 (489)
274 PF08477 Miro: Miro-like prote 40.9 11 0.00024 30.4 0.5 15 112-126 2-16 (119)
275 TIGR03689 pup_AAA proteasome A 40.9 9.8 0.00021 40.1 0.2 16 111-126 218-233 (512)
276 COG2607 Predicted ATPase (AAA+ 40.9 22 0.00048 34.0 2.6 95 102-232 77-179 (287)
277 COG4096 HsdR Type I site-speci 40.8 46 0.00099 37.0 5.2 33 95-128 172-204 (875)
278 PF12774 AAA_6: Hydrolytic ATP 40.7 13 0.00029 34.9 1.1 43 112-155 35-83 (231)
279 PRK14532 adenylate kinase; Pro 40.7 11 0.00025 33.4 0.6 16 111-126 2-17 (188)
280 PRK15424 propionate catabolism 40.6 15 0.00033 39.0 1.6 43 77-125 216-258 (538)
281 PF00485 PRK: Phosphoribulokin 40.6 8.8 0.00019 34.6 -0.1 15 112-126 2-16 (194)
282 CHL00176 ftsH cell division pr 40.1 13 0.00028 40.3 1.1 17 110-126 217-233 (638)
283 PRK04301 radA DNA repair and r 40.1 19 0.00042 35.2 2.2 31 97-127 87-120 (317)
284 PRK12726 flagellar biosynthesi 40.1 10 0.00022 38.6 0.2 18 110-127 207-224 (407)
285 TIGR00602 rad24 checkpoint pro 39.9 17 0.00037 39.4 1.9 17 111-127 112-128 (637)
286 COG3839 MalK ABC-type sugar tr 39.9 9.6 0.00021 38.0 -0.0 15 112-126 32-46 (338)
287 PRK15429 formate hydrogenlyase 39.8 16 0.00035 39.9 1.7 43 77-125 373-415 (686)
288 TIGR03877 thermo_KaiC_1 KaiC d 39.4 21 0.00045 33.4 2.2 28 98-125 7-37 (237)
289 cd02023 UMPK Uridine monophosp 39.4 9.5 0.00021 34.3 -0.1 15 112-126 2-16 (198)
290 PRK10917 ATP-dependent DNA hel 39.2 22 0.00048 38.8 2.7 21 107-127 280-300 (681)
291 TIGR02030 BchI-ChlI magnesium 39.1 18 0.0004 36.0 1.9 32 97-128 13-44 (337)
292 COG1136 SalX ABC-type antimicr 38.9 9.7 0.00021 35.8 -0.1 23 104-126 20-48 (226)
293 COG0630 VirB11 Type IV secreto 38.8 9.8 0.00021 37.5 -0.1 20 108-127 142-161 (312)
294 PRK14970 DNA polymerase III su 38.6 20 0.00044 35.6 2.1 29 98-126 27-56 (367)
295 TIGR03744 traC_PFL_4706 conjug 38.6 10 0.00022 42.8 -0.0 19 108-126 474-492 (893)
296 PRK04040 adenylate kinase; Pro 38.5 13 0.00027 33.7 0.5 16 111-126 4-19 (188)
297 cd02025 PanK Pantothenate kina 38.5 8.1 0.00017 35.9 -0.7 12 115-126 5-16 (220)
298 PF14532 Sigma54_activ_2: Sigm 38.5 13 0.00028 31.5 0.6 21 106-126 18-38 (138)
299 cd00983 recA RecA is a bacter 38.4 20 0.00043 35.6 2.0 32 95-126 37-72 (325)
300 TIGR02173 cyt_kin_arch cytidyl 38.3 12 0.00027 32.3 0.4 16 111-126 2-17 (171)
301 TIGR03238 dnd_assoc_3 dnd syst 38.3 18 0.00039 37.9 1.7 28 101-128 18-51 (504)
302 cd01983 Fer4_NifH The Fer4_Nif 38.2 12 0.00025 28.5 0.2 16 112-127 2-17 (99)
303 COG0467 RAD55 RecA-superfamily 38.2 20 0.00043 33.9 1.9 25 101-125 12-39 (260)
304 PF10412 TrwB_AAD_bind: Type I 38.1 9.2 0.0002 38.7 -0.4 18 110-127 16-33 (386)
305 PF04548 AIG1: AIG1 family; I 38.0 10 0.00022 34.8 -0.2 16 111-126 2-17 (212)
306 TIGR02329 propionate_PrpR prop 37.9 16 0.00035 38.7 1.3 44 76-125 208-251 (526)
307 TIGR01074 rep ATP-dependent DN 37.9 14 0.0003 40.1 0.8 21 108-128 13-33 (664)
308 PRK14721 flhF flagellar biosyn 37.9 12 0.00026 38.5 0.3 18 110-127 192-209 (420)
309 PRK01297 ATP-dependent RNA hel 37.8 19 0.0004 37.3 1.8 27 98-126 115-141 (475)
310 PRK10820 DNA-binding transcrip 37.7 18 0.00038 38.2 1.6 47 74-126 198-244 (520)
311 cd02027 APSK Adenosine 5'-phos 37.6 13 0.00027 32.2 0.4 14 112-125 2-15 (149)
312 PRK06762 hypothetical protein; 37.5 14 0.00029 32.2 0.6 15 111-125 4-18 (166)
313 PRK03839 putative kinase; Prov 37.4 13 0.00028 32.9 0.4 14 112-125 3-16 (180)
314 PRK09354 recA recombinase A; P 37.3 22 0.00047 35.7 2.0 32 95-126 42-77 (349)
315 TIGR00231 small_GTP small GTP- 36.8 11 0.00024 31.0 -0.1 16 111-126 3-18 (161)
316 TIGR00643 recG ATP-dependent D 36.7 25 0.00054 38.0 2.6 27 100-126 243-273 (630)
317 KOG2655|consensus 36.7 13 0.00029 37.3 0.4 23 104-126 16-38 (366)
318 PRK10078 ribose 1,5-bisphospho 36.6 12 0.00025 33.5 0.0 16 111-126 4-19 (186)
319 PRK05342 clpX ATP-dependent pr 36.6 14 0.00031 37.8 0.7 18 109-126 108-125 (412)
320 TIGR02768 TraA_Ti Ti-type conj 36.3 19 0.0004 39.9 1.5 28 100-128 360-387 (744)
321 PRK11057 ATP-dependent DNA hel 36.3 22 0.00048 38.2 2.1 26 98-125 31-56 (607)
322 PRK01172 ski2-like helicase; P 36.1 22 0.00047 38.7 2.0 23 101-125 31-53 (674)
323 TIGR01351 adk adenylate kinase 36.0 15 0.00032 33.6 0.6 35 112-152 2-36 (210)
324 COG3854 SpoIIIAA ncharacterize 35.8 27 0.00059 33.3 2.3 31 96-126 124-154 (308)
325 TIGR02397 dnaX_nterm DNA polym 35.8 25 0.00054 34.5 2.2 26 101-126 27-53 (355)
326 TIGR01425 SRP54_euk signal rec 35.7 32 0.00069 35.5 3.0 19 109-127 100-118 (429)
327 PRK14527 adenylate kinase; Pro 35.7 16 0.00034 32.8 0.7 17 110-126 7-23 (191)
328 PTZ00035 Rad51 protein; Provis 35.6 26 0.00056 34.9 2.3 31 96-126 102-135 (337)
329 PF00158 Sigma54_activat: Sigm 35.6 15 0.00032 32.7 0.5 19 106-124 19-37 (168)
330 COG0563 Adk Adenylate kinase a 35.5 16 0.00034 32.9 0.7 14 112-125 3-16 (178)
331 PHA02774 E1; Provisional 35.5 22 0.00048 38.1 1.9 28 100-127 423-452 (613)
332 PRK12724 flagellar biosynthesi 35.4 13 0.00028 38.3 0.2 18 110-127 224-241 (432)
333 PF02534 T4SS-DNA_transf: Type 35.3 23 0.00051 36.4 2.0 18 110-127 45-62 (469)
334 TIGR02639 ClpA ATP-dependent C 35.2 25 0.00053 38.8 2.3 31 98-128 192-222 (731)
335 PRK14729 miaA tRNA delta(2)-is 35.2 16 0.00035 35.8 0.8 15 111-125 6-20 (300)
336 PF06745 KaiC: KaiC; InterPro 35.0 16 0.00036 33.5 0.7 27 99-125 6-35 (226)
337 PRK06305 DNA polymerase III su 35.0 21 0.00045 37.0 1.5 41 78-126 15-56 (451)
338 PRK14530 adenylate kinase; Pro 35.0 15 0.00032 33.7 0.4 16 111-126 5-20 (215)
339 TIGR03263 guanyl_kin guanylate 34.7 18 0.0004 31.7 1.0 16 111-126 3-18 (180)
340 TIGR01389 recQ ATP-dependent D 34.7 22 0.00049 37.9 1.8 27 98-126 19-45 (591)
341 PRK13889 conjugal transfer rel 34.7 19 0.00041 41.0 1.3 29 98-127 352-380 (988)
342 TIGR02688 conserved hypothetic 34.6 16 0.00034 37.8 0.6 45 106-155 208-252 (449)
343 TIGR01447 recD exodeoxyribonuc 34.4 19 0.00042 38.6 1.2 26 100-127 153-178 (586)
344 PRK14962 DNA polymerase III su 34.2 27 0.00058 36.5 2.2 27 100-126 26-53 (472)
345 KOG0735|consensus 34.1 16 0.00036 39.9 0.6 50 108-157 700-760 (952)
346 KOG0745|consensus 33.7 19 0.0004 37.3 0.9 16 110-125 227-242 (564)
347 PRK06851 hypothetical protein; 33.6 17 0.00038 36.6 0.7 27 100-126 21-47 (367)
348 TIGR02238 recomb_DMC1 meiotic 33.6 31 0.00066 34.0 2.4 31 96-126 80-113 (313)
349 PRK00300 gmk guanylate kinase; 33.5 20 0.00044 32.2 1.1 17 110-126 6-22 (205)
350 TIGR00763 lon ATP-dependent pr 33.5 16 0.00035 40.5 0.5 16 111-126 349-364 (775)
351 COG0464 SpoVK ATPases of the A 33.3 22 0.00047 37.1 1.4 80 76-155 238-333 (494)
352 TIGR00382 clpX endopeptidase C 33.3 17 0.00038 37.2 0.6 17 110-126 117-133 (413)
353 PRK11664 ATP-dependent RNA hel 33.2 25 0.00055 39.3 1.9 28 98-127 11-38 (812)
354 PRK10865 protein disaggregatio 33.2 24 0.00053 39.6 1.8 17 110-126 599-615 (857)
355 cd02019 NK Nucleoside/nucleoti 33.2 19 0.00041 26.7 0.7 15 112-126 2-16 (69)
356 TIGR03880 KaiC_arch_3 KaiC dom 33.2 28 0.00061 31.9 2.0 27 100-126 4-33 (224)
357 cd00071 GMPK Guanosine monopho 33.1 18 0.0004 30.7 0.7 14 112-125 2-15 (137)
358 PF11966 SSURE: Fibronectin-bi 33.1 72 0.0016 24.6 3.8 58 46-123 4-65 (81)
359 PF03193 DUF258: Protein of un 33.1 19 0.00042 31.9 0.8 25 100-126 28-52 (161)
360 PRK13767 ATP-dependent helicas 32.9 40 0.00086 38.1 3.4 25 100-126 40-64 (876)
361 PRK00279 adk adenylate kinase; 32.9 18 0.00038 33.2 0.6 14 112-125 3-16 (215)
362 KOG0742|consensus 32.8 20 0.00044 36.8 1.0 14 111-124 386-399 (630)
363 TIGR00235 udk uridine kinase. 32.7 17 0.00037 33.1 0.4 16 111-126 8-23 (207)
364 TIGR00929 VirB4_CagE type IV s 32.5 15 0.00033 40.4 0.1 18 109-126 434-451 (785)
365 PTZ00301 uridine kinase; Provi 32.5 14 0.0003 34.3 -0.2 13 114-126 8-20 (210)
366 cd03279 ABC_sbcCD SbcCD and ot 32.5 17 0.00036 33.3 0.3 17 110-126 29-45 (213)
367 COG1131 CcmA ABC-type multidru 32.3 15 0.00033 35.7 0.0 13 114-126 36-48 (293)
368 PRK02496 adk adenylate kinase; 32.0 19 0.0004 32.0 0.6 15 112-126 4-18 (184)
369 KOG0741|consensus 31.9 23 0.00049 37.6 1.2 15 111-125 258-272 (744)
370 cd03240 ABC_Rad50 The catalyti 31.9 16 0.00035 33.3 0.2 16 111-126 24-39 (204)
371 PRK13531 regulatory ATPase Rav 31.8 27 0.00059 36.7 1.7 29 96-126 28-56 (498)
372 PRK13700 conjugal transfer pro 31.7 15 0.00033 40.2 -0.1 16 112-127 188-203 (732)
373 PRK11034 clpA ATP-dependent Cl 31.6 29 0.00064 38.4 2.1 18 109-126 488-505 (758)
374 PRK04296 thymidine kinase; Pro 31.4 12 0.00027 33.7 -0.7 18 111-128 4-21 (190)
375 cd00227 CPT Chloramphenicol (C 31.3 19 0.0004 31.8 0.4 16 111-126 4-19 (175)
376 PRK11545 gntK gluconate kinase 31.3 12 0.00026 32.9 -0.8 12 115-126 1-12 (163)
377 PRK14955 DNA polymerase III su 31.1 33 0.00072 34.8 2.3 26 101-126 28-55 (397)
378 cd03115 SRP The signal recogni 31.0 17 0.00037 31.8 0.2 15 112-126 3-17 (173)
379 PF01926 MMR_HSR1: 50S ribosom 31.0 14 0.00031 29.9 -0.4 15 112-126 2-16 (116)
380 KOG0922|consensus 30.9 27 0.00059 37.7 1.6 18 109-126 66-83 (674)
381 PRK05022 anaerobic nitric oxid 30.9 25 0.00054 36.9 1.4 42 78-125 185-226 (509)
382 PLN03187 meiotic recombination 30.9 32 0.00068 34.4 2.0 31 96-126 110-143 (344)
383 smart00488 DEXDc2 DEAD-like he 30.7 30 0.00066 33.5 1.9 27 100-128 20-46 (289)
384 smart00489 DEXDc3 DEAD-like he 30.7 30 0.00066 33.5 1.9 27 100-128 20-46 (289)
385 PRK12727 flagellar biosynthesi 30.7 18 0.00039 38.4 0.3 18 110-127 351-368 (559)
386 PRK11608 pspF phage shock prot 30.6 27 0.00058 34.5 1.4 19 107-125 27-45 (326)
387 COG1122 CbiO ABC-type cobalt t 30.5 20 0.00044 33.8 0.6 17 110-126 31-47 (235)
388 PRK09302 circadian clock prote 30.4 32 0.0007 36.0 2.1 30 97-126 16-48 (509)
389 PF09439 SRPRB: Signal recogni 30.3 21 0.00046 32.3 0.6 16 110-125 4-19 (181)
390 PRK14528 adenylate kinase; Pro 30.3 21 0.00045 32.1 0.6 16 111-126 3-18 (186)
391 PLN02200 adenylate kinase fami 30.1 21 0.00045 33.5 0.6 36 110-151 44-79 (234)
392 PF02367 UPF0079: Uncharacteri 30.0 34 0.00074 28.9 1.8 17 110-126 16-32 (123)
393 PRK14964 DNA polymerase III su 29.9 36 0.00078 35.8 2.3 25 102-126 27-52 (491)
394 PRK06645 DNA polymerase III su 29.9 25 0.00055 37.0 1.2 24 103-126 36-60 (507)
395 PRK11823 DNA repair protein Ra 29.7 27 0.00058 36.2 1.4 31 97-127 65-98 (446)
396 PHA02530 pseT polynucleotide k 29.7 21 0.00046 34.2 0.6 16 111-126 4-19 (300)
397 PRK15483 type III restriction- 29.6 19 0.00041 40.8 0.2 14 115-128 65-78 (986)
398 PRK01184 hypothetical protein; 29.5 21 0.00045 31.6 0.4 15 111-125 3-17 (184)
399 PF00025 Arf: ADP-ribosylation 29.5 28 0.0006 30.7 1.3 27 100-126 4-31 (175)
400 COG0552 FtsY Signal recognitio 29.5 59 0.0013 32.4 3.6 20 107-126 137-156 (340)
401 COG1118 CysA ABC-type sulfate/ 29.5 16 0.00034 36.1 -0.4 14 113-126 32-45 (345)
402 cd00544 CobU Adenosylcobinamid 29.5 24 0.00051 31.5 0.8 14 112-125 2-15 (169)
403 PRK13721 conjugal transfer ATP 29.4 19 0.0004 40.4 0.1 18 109-126 449-466 (844)
404 PRK06731 flhF flagellar biosyn 29.4 18 0.00039 34.9 0.0 18 110-127 76-93 (270)
405 TIGR03878 thermo_KaiC_2 KaiC d 29.3 26 0.00056 33.3 1.1 17 109-125 36-52 (259)
406 cd01121 Sms Sms (bacterial rad 29.1 27 0.00059 35.2 1.3 31 97-127 67-100 (372)
407 TIGR00959 ffh signal recogniti 29.0 21 0.00045 36.8 0.4 17 110-126 100-116 (428)
408 PRK05416 glmZ(sRNA)-inactivati 29.0 17 0.00038 35.3 -0.2 17 111-127 8-24 (288)
409 PRK05480 uridine/cytidine kina 29.0 21 0.00047 32.3 0.4 16 111-126 8-23 (209)
410 cd03272 ABC_SMC3_euk Eukaryoti 29.0 21 0.00046 33.1 0.4 16 111-126 25-40 (243)
411 TIGR03574 selen_PSTK L-seryl-t 29.0 21 0.00045 33.5 0.4 15 112-126 2-16 (249)
412 KOG2035|consensus 28.9 52 0.0011 32.2 3.0 34 93-126 17-51 (351)
413 cd02028 UMPK_like Uridine mono 28.9 21 0.00046 31.8 0.4 15 112-126 2-16 (179)
414 KOG2170|consensus 28.9 31 0.00068 34.0 1.5 14 112-125 112-126 (344)
415 TIGR01650 PD_CobS cobaltochela 28.8 27 0.00059 34.7 1.1 18 109-126 64-81 (327)
416 PF01745 IPT: Isopentenyl tran 28.7 22 0.00048 33.3 0.5 15 112-126 4-18 (233)
417 TIGR03117 cas_csf4 CRISPR-asso 28.6 35 0.00077 37.0 2.0 32 89-126 2-33 (636)
418 TIGR00390 hslU ATP-dependent p 28.5 23 0.0005 36.5 0.6 17 110-126 48-64 (441)
419 KOG0736|consensus 28.4 26 0.00056 38.7 1.0 37 88-124 680-720 (953)
420 TIGR01243 CDC48 AAA family ATP 28.4 24 0.00052 38.9 0.7 17 110-126 488-504 (733)
421 PRK08533 flagellar accessory p 28.4 26 0.00056 32.7 0.9 18 109-126 24-41 (230)
422 PF04665 Pox_A32: Poxvirus A32 28.3 20 0.00043 34.0 0.1 15 112-126 16-30 (241)
423 KOG0987|consensus 28.3 51 0.0011 35.1 3.1 35 87-126 120-154 (540)
424 TIGR01587 cas3_core CRISPR-ass 28.3 25 0.00055 34.6 0.8 15 112-126 2-16 (358)
425 KOG1534|consensus 28.3 31 0.00068 32.4 1.3 15 111-125 5-19 (273)
426 PRK05800 cobU adenosylcobinami 28.2 25 0.00054 31.3 0.7 15 111-125 3-17 (170)
427 PF05872 DUF853: Bacterial pro 28.2 25 0.00053 36.6 0.7 14 113-126 23-36 (502)
428 PF13481 AAA_25: AAA domain; P 28.1 17 0.00038 32.1 -0.3 29 99-127 19-50 (193)
429 COG0324 MiaA tRNA delta(2)-iso 28.1 26 0.00056 34.5 0.9 16 111-126 5-20 (308)
430 KOG0924|consensus 27.9 32 0.00068 37.6 1.5 20 107-126 369-388 (1042)
431 PRK13407 bchI magnesium chelat 27.9 32 0.0007 34.2 1.5 26 100-126 20-46 (334)
432 TIGR00678 holB DNA polymerase 27.9 33 0.00072 30.5 1.5 25 102-126 6-31 (188)
433 TIGR02239 recomb_RAD51 DNA rep 27.9 44 0.00096 32.9 2.5 32 96-127 80-114 (316)
434 TIGR01073 pcrA ATP-dependent D 27.8 29 0.00064 38.1 1.3 24 105-128 13-36 (726)
435 PRK05541 adenylylsulfate kinas 27.8 24 0.00053 30.9 0.6 16 111-126 9-24 (176)
436 PF01078 Mg_chelatase: Magnesi 27.7 37 0.0008 31.5 1.7 23 103-126 17-39 (206)
437 PRK00091 miaA tRNA delta(2)-is 27.7 26 0.00056 34.5 0.8 15 111-125 6-20 (307)
438 PF01443 Viral_helicase1: Vira 27.6 18 0.0004 33.0 -0.3 16 112-127 1-16 (234)
439 PRK11773 uvrD DNA-dependent he 27.6 30 0.00064 38.1 1.3 22 107-128 20-41 (721)
440 PRK13949 shikimate kinase; Pro 27.5 25 0.00054 31.1 0.6 16 111-126 3-18 (169)
441 PRK14965 DNA polymerase III su 27.5 32 0.00069 36.9 1.5 27 100-126 28-55 (576)
442 PF04466 Terminase_3: Phage te 27.4 20 0.00044 36.2 0.0 18 112-129 5-22 (387)
443 TIGR00176 mobB molybdopterin-g 27.4 20 0.00043 31.4 -0.1 14 113-126 3-16 (155)
444 cd04163 Era Era subfamily. Er 27.3 21 0.00045 29.8 0.0 16 111-126 5-20 (168)
445 TIGR02759 TraD_Ftype type IV c 27.3 21 0.00045 38.2 -0.0 16 111-126 178-193 (566)
446 KOG1970|consensus 27.2 27 0.00059 37.1 0.8 21 106-126 106-127 (634)
447 PRK14956 DNA polymerase III su 27.1 41 0.00088 35.3 2.1 27 100-126 30-57 (484)
448 PRK14957 DNA polymerase III su 27.1 31 0.00066 36.8 1.2 17 110-126 39-55 (546)
449 TIGR03345 VI_ClpV1 type VI sec 27.1 39 0.00085 38.0 2.1 31 95-125 576-612 (852)
450 PRK11034 clpA ATP-dependent Cl 27.0 37 0.00081 37.6 1.9 30 99-128 197-226 (758)
451 cd01853 Toc34_like Toc34-like 26.8 23 0.00049 33.7 0.2 20 107-126 29-48 (249)
452 PTZ00110 helicase; Provisional 26.8 31 0.00067 36.6 1.2 25 100-126 160-184 (545)
453 PRK04182 cytidylate kinase; Pr 26.8 25 0.00054 30.6 0.4 16 111-126 2-17 (180)
454 PRK09825 idnK D-gluconate kina 26.8 26 0.00057 31.2 0.6 16 111-126 5-20 (176)
455 TIGR01547 phage_term_2 phage t 26.7 23 0.00049 35.7 0.2 17 111-127 3-19 (396)
456 PRK13873 conjugal transfer ATP 26.7 24 0.00053 39.3 0.4 16 111-126 443-458 (811)
457 PRK13947 shikimate kinase; Pro 26.7 26 0.00057 30.4 0.6 16 111-126 3-18 (171)
458 PRK11388 DNA-binding transcrip 26.6 36 0.00078 36.8 1.7 44 76-125 321-364 (638)
459 PRK06851 hypothetical protein; 26.5 30 0.00066 34.9 1.0 27 100-126 205-231 (367)
460 cd03238 ABC_UvrA The excision 26.4 21 0.00046 32.0 -0.1 15 112-126 24-38 (176)
461 TIGR01075 uvrD DNA helicase II 26.4 32 0.0007 37.7 1.3 21 108-128 16-36 (715)
462 PRK13853 type IV secretion sys 26.3 20 0.00043 39.9 -0.4 17 110-126 427-443 (789)
463 TIGR00174 miaA tRNA isopenteny 26.3 29 0.00062 33.8 0.8 14 112-125 2-15 (287)
464 PRK13946 shikimate kinase; Pro 26.3 29 0.00062 31.0 0.8 18 109-126 10-27 (184)
465 PF00005 ABC_tran: ABC transpo 26.2 22 0.00047 29.6 -0.1 16 111-126 13-28 (137)
466 PRK11784 tRNA 2-selenouridine 26.2 31 0.00067 34.5 1.0 34 93-127 126-159 (345)
467 PRK13880 conjugal transfer cou 26.1 38 0.00082 36.8 1.8 19 109-127 175-193 (636)
468 PLN03186 DNA repair protein RA 26.1 48 0.001 33.1 2.4 33 95-127 106-141 (342)
469 TIGR02639 ClpA ATP-dependent C 25.9 46 0.00099 36.7 2.4 17 110-126 485-501 (731)
470 cd02022 DPCK Dephospho-coenzym 25.9 26 0.00057 31.1 0.4 15 112-126 2-16 (179)
471 PF08298 AAA_PrkA: PrkA AAA do 25.9 1.7E+02 0.0036 29.6 6.0 49 100-151 76-142 (358)
472 PRK11131 ATP-dependent RNA hel 25.8 29 0.00064 40.6 0.9 23 103-126 84-106 (1294)
473 TIGR02012 tigrfam_recA protein 25.8 43 0.00092 33.2 1.9 32 95-126 37-72 (321)
474 PRK05057 aroK shikimate kinase 25.7 33 0.00072 30.3 1.0 17 110-126 5-21 (172)
475 TIGR01970 DEAH_box_HrpB ATP-de 25.7 35 0.00075 38.2 1.4 18 109-126 17-34 (819)
476 TIGR00580 mfd transcription-re 25.4 53 0.0011 37.4 2.8 30 97-126 460-489 (926)
477 PTZ00088 adenylate kinase 1; P 25.3 28 0.00062 32.6 0.6 14 112-125 9-22 (229)
478 COG4525 TauB ABC-type taurine 25.3 26 0.00056 32.7 0.2 16 111-126 33-48 (259)
479 PRK13891 conjugal transfer pro 25.3 25 0.00053 39.6 0.1 18 109-126 488-505 (852)
480 PRK11054 helD DNA helicase IV; 25.2 27 0.00058 38.3 0.4 19 110-128 210-228 (684)
481 TIGR00554 panK_bact pantothena 25.1 40 0.00086 32.9 1.5 15 112-126 65-79 (290)
482 KOG0354|consensus 25.1 45 0.00098 36.7 2.1 26 98-126 68-93 (746)
483 cd01876 YihA_EngB The YihA (En 25.1 23 0.0005 29.6 -0.1 15 112-126 2-16 (170)
484 KOG0743|consensus 25.0 29 0.00062 35.9 0.5 15 112-126 238-252 (457)
485 PRK05986 cob(I)alamin adenolsy 24.9 23 0.0005 32.4 -0.1 20 109-128 22-41 (191)
486 PRK10875 recD exonuclease V su 24.8 25 0.00054 38.0 0.1 16 111-126 169-184 (615)
487 PLN02165 adenylate isopentenyl 24.8 30 0.00065 34.5 0.6 17 110-126 44-60 (334)
488 PRK09401 reverse gyrase; Revie 24.7 46 0.00099 38.9 2.1 25 99-125 87-111 (1176)
489 PRK03731 aroL shikimate kinase 24.6 31 0.00068 30.0 0.7 16 111-126 4-19 (171)
490 PF02463 SMC_N: RecF/RecN/SMC 24.6 32 0.0007 31.3 0.8 16 111-126 26-41 (220)
491 cd00984 DnaB_C DnaB helicase C 24.6 45 0.00098 30.7 1.8 25 102-126 4-30 (242)
492 TIGR01967 DEAH_box_HrpA ATP-de 24.6 48 0.001 39.0 2.2 23 103-126 77-99 (1283)
493 PRK00625 shikimate kinase; Pro 24.5 29 0.00063 31.0 0.4 16 111-126 2-17 (173)
494 COG1702 PhoH Phosphate starvat 24.4 36 0.00079 33.9 1.1 18 109-126 143-160 (348)
495 TIGR03783 Bac_Flav_CT_G Bacter 24.4 25 0.00054 39.4 -0.0 18 109-126 438-455 (829)
496 PRK07667 uridine kinase; Provi 24.3 29 0.00064 31.2 0.4 19 107-125 15-33 (193)
497 cd00876 Ras Ras family. The R 24.2 32 0.0007 28.7 0.6 15 112-126 2-16 (160)
498 PF05707 Zot: Zonular occluden 24.2 28 0.00061 31.4 0.3 15 112-126 3-17 (193)
499 cd03278 ABC_SMC_barmotin Barmo 24.0 26 0.00056 31.8 0.0 16 111-126 24-39 (197)
500 KOG0651|consensus 24.0 34 0.00073 34.0 0.8 83 75-157 127-225 (388)
No 1
>KOG0246|consensus
Probab=100.00 E-value=8.9e-80 Score=611.76 Aligned_cols=272 Identities=71% Similarity=1.103 Sum_probs=263.3
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
+..|+||++||+.++++.||..+++|||+.+|+|..+|+||||||||||||||.|++.+..+++..||+.++.+++|..+
T Consensus 257 n~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L 336 (676)
T KOG0246|consen 257 NQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLL 336 (676)
T ss_pred hceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-------- 225 (386)
.........+.|++||||||+.++||||+++++++++||.++.++|.||++..|.+.+|++.+|+.|++.|+
T Consensus 337 ~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs 416 (676)
T KOG0246|consen 337 RQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANS 416 (676)
T ss_pred cccchhhcceEEEEEEEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcc
Confidence 998888899999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ----ceeEEEE-------eEEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCc
Q psy23 226 ----NNICFSF-------LQVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASK 294 (386)
Q Consensus 226 ----~h~i~~l-------~~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSk 294 (386)
+|++|+| ...+|++.||||||+||++.+...+++.+.||+.|||||+||..||+||.+++.|+|||.||
T Consensus 417 ~SSRSHAvfQIilr~~~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SK 496 (676)
T KOG0246|consen 417 NSSRSHAVFQIILRKHGEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSK 496 (676)
T ss_pred cccccceeEeeeeecCCcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Confidence 5999999 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q psy23 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPT 345 (386)
Q Consensus 295 LT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~ 345 (386)
||.+|+|+|+|.|++|+||+||||...+.+.||+|||||+|+|++......
T Consensus 497 LTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~~ 547 (676)
T KOG0246|consen 497 LTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGGP 547 (676)
T ss_pred HHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCCc
Confidence 999999999998999999999999999999999999999999999887764
No 2
>KOG4280|consensus
Probab=100.00 E-value=6.4e-76 Score=598.95 Aligned_cols=276 Identities=34% Similarity=0.476 Sum_probs=255.9
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||.||+++++|++||+.++.|+|+++++|||+||||||||||||||||.|+ .....|||||++++||.+
T Consensus 50 ~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~-----~~~~~GiiPraf~~LF~~ 124 (574)
T KOG4280|consen 50 KPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGP-----DPELRGLIPRAFEHLFRH 124 (574)
T ss_pred CCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCC-----ChhhCCchhHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999999999999998 156899999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccccc--cceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-----
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA--KLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI----- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~--~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~----- 225 (386)
|+..+.. ..|.|++||+|||||+|+|||++.. .+.++++++.|+||+|++++.|.+++|++.+|..|.++|+
T Consensus 125 I~~~~~~-~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~ 203 (574)
T KOG4280|consen 125 IDERKEK-TRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATS 203 (574)
T ss_pred HHhcccc-ceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhcc
Confidence 9987633 3899999999999999999999866 7999999999999999999999999999999999998887
Q ss_pred -------ceeEEEEe-------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCC
Q psy23 226 -------NNICFSFL-------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKG 285 (386)
Q Consensus 226 -------~h~i~~l~-------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~ 285 (386)
+|++|++. ...|+|+|||||||||.+++++. +++++|+.+||+||++||+||.+|++..
T Consensus 204 mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~-G~rlkEa~~IN~SLs~LG~vI~aLvd~~ 282 (574)
T KOG4280|consen 204 MNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAE-GERLKEATNINLSLSALGNVISALVDGS 282 (574)
T ss_pred CCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCcc-chhhhhhcccchhHHHHHHHHHHHhccc
Confidence 49999992 24589999999999999988654 6788999999999999999999999976
Q ss_pred C-cccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhhhh
Q psy23 286 A-HLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQR 356 (386)
Q Consensus 286 ~-~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~~~ 356 (386)
. ||||||||||+||||+ |||||+|+||+||+|+..+++||++|||||+|||.|+|.|.+|..+.++.+.-
T Consensus 283 ~~HIPYRdSkLT~LLqdS-LGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~ 353 (574)
T KOG4280|consen 283 KTHIPYRDSKLTRLLQDS-LGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRE 353 (574)
T ss_pred cCCCCcchhHHHHHHHHH-cCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHH
Confidence 6 9999999999999999 69999999999999999999999999999999999999999999999665543
No 3
>KOG0243|consensus
Probab=100.00 E-value=3.6e-73 Score=601.42 Aligned_cols=314 Identities=34% Similarity=0.524 Sum_probs=267.7
Q ss_pred CccCCeEEeeeeeeccCCCCCCCCCC--CCccccCcee----ec-----CCC--CceeeeeEEcCCCCChHHHHHhhhhH
Q psy23 33 GETKGKEVELDALFSLNSNLMPKTNN--ENSQYNNCRS----MP-----LSG--NKLSRCWKVLSLKNTVPLDFRFSAKP 99 (386)
Q Consensus 33 ~~~~gk~~~~~~i~~~n~~l~p~~~~--~~~~~~~~~~----~~-----~~~--~~~f~fd~vf~~~~sq~~vf~~~~~p 99 (386)
..-+-|+++++++++..| ++..-. .......|.- +. .+. ++.|.||+||+|++.|+++|+.++.|
T Consensus 42 k~~~e~~~NIqVivRcRp--~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p 119 (1041)
T KOG0243|consen 42 KDHKEKEVNIQVIVRCRP--RNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSP 119 (1041)
T ss_pred CCCCCCCCceEEEEEeCC--CCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHH
Confidence 355667899999999988 221110 0011111111 11 122 67899999999999999999999999
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeeccCC--CCCCcccccchhhhhHHHHHHHhcCCCCCCceeeEEEEEEEEEcCee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGGDF--QGKTQDCKKGIYAMAAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKV 177 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~--~~~~~~~~~Gli~r~~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v 177 (386)
+|+.|+.|||||||||||||+||||||.|+. .++..+...|||||++.+||..++.. +.+|+|+|||+|+|||++
T Consensus 120 ~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~---~~EYsvKVSfLELYNEEl 196 (1041)
T KOG0243|consen 120 IIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ---GAEYSVKVSFLELYNEEL 196 (1041)
T ss_pred HHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc---CCeEEEEEEehhhhhHHH
Confidence 9999999999999999999999999999963 33556778999999999999999874 479999999999999999
Q ss_pred eecccccc----cceEEE-----cCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------------ceeEEEEe---
Q psy23 178 FDLLAEKA----KLRVLE-----DGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------------NNICFSFL--- 233 (386)
Q Consensus 178 ~DLL~~~~----~l~i~e-----d~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------------~h~i~~l~--- 233 (386)
+|||++.. .+++.+ +.+++++|.|+-+..|.++.|++.+|++|...|. +|.||+|.
T Consensus 197 ~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhi 276 (1041)
T KOG0243|consen 197 TDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHI 276 (1041)
T ss_pred HHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEE
Confidence 99998643 234433 4588999999999999999999999999987776 59999993
Q ss_pred ----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCcccccccccc
Q psy23 234 ----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSF 303 (386)
Q Consensus 234 ----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSkLT~lL~d~l 303 (386)
...|+|+||||||||...+.|+.++ +.+|+..||+||++||+||+||.++..|||||+|||||||||+
T Consensus 277 ke~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~-RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDS- 354 (1041)
T KOG0243|consen 277 KENTPEGEELVKIGKLNLVDLAGSENISRSGARNG-RAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDS- 354 (1041)
T ss_pred ecCCCcchhhHhhcccceeeccccccccccccccc-hhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHH-
Confidence 2359999999999999999988776 6679999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchh
Q psy23 304 IGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTI 353 (386)
Q Consensus 304 lggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~ 353 (386)
|||+.+|+||+||||+..+++||++||.||.|||+|+|+|.+|+.-....
T Consensus 355 LGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~ 404 (1041)
T KOG0243|consen 355 LGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKT 404 (1041)
T ss_pred hCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHH
Confidence 69999999999999999999999999999999999999999997654433
No 4
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1e-69 Score=536.01 Aligned_cols=264 Identities=34% Similarity=0.485 Sum_probs=239.2
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCC--CcccccchhhhhHHHHHH
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGK--TQDCKKGIYAMAAKDVFK 151 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~--~~~~~~Gli~r~~~~LF~ 151 (386)
.+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+.... ....++|||||++++||.
T Consensus 40 ~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~ 119 (337)
T cd01373 40 PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFS 119 (337)
T ss_pred CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999975432 123578999999999999
Q ss_pred HhcCCC---CCCceeeEEEEEEEEEcCeeeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--
Q psy23 152 LLKSPK---YRGLNLHVSASFFEIYSGKVFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-- 225 (386)
Q Consensus 152 ~~~~~~---~~~~~~~v~vS~~EIyne~v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-- 225 (386)
.++... ..+..|.|++||+|||||+|+|||++. ..+.+++++.+++++.|++++.|.|++|++++|..|.++|.
T Consensus 120 ~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~ 199 (337)
T cd01373 120 LIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVA 199 (337)
T ss_pred HHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcc
Confidence 986542 235689999999999999999999876 47999999999999999999999999999999999987774
Q ss_pred ----------ceeEEEEe------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhc
Q psy23 226 ----------NNICFSFL------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR 283 (386)
Q Consensus 226 ----------~h~i~~l~------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~ 283 (386)
+|+||++. ...|+|+|||||||||..+++. .+.+++|+..||+||.+|++||.+|++
T Consensus 200 ~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~aL~~ 278 (337)
T cd01373 200 ATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGA-EGVRLKEAKNINKSLSTLGHVIMALVD 278 (337)
T ss_pred cCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCC-ccHhhhhhccccHHHHHHHHHHHHHHh
Confidence 59999993 2358999999999999888754 456788999999999999999999985
Q ss_pred ----CCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 284 ----KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 284 ----~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
+..|||||+||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 279 ~~~~~~~~ipyR~SkLT~lL~ds-Lggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 279 VAHGKQRHVPYRDSKLTFLLRDS-LGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred hccCCCCccCCcccHHHHHHHHh-cCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 4689999999999999999 599999999999999999999999999999999986
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.5e-69 Score=535.13 Aligned_cols=258 Identities=41% Similarity=0.599 Sum_probs=240.3
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
.++.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.
T Consensus 52 ~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~------~~~Giipr~~~~LF~~ 125 (338)
T cd01370 52 KELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD------SDPGLMVLTMKDLFDK 125 (338)
T ss_pred CceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCC------CCCchHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999974 4799999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccc-cccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAE-KAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------ 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~-~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------ 225 (386)
++... .++.|.|++||+|||||+|+|||++ ..++.+++|+++++++.|++++.|.+++|++++|+.|.++|.
T Consensus 126 i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~ 204 (338)
T cd01370 126 IEERK-DDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEA 204 (338)
T ss_pred hhhcc-cCceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccc
Confidence 98765 5689999999999999999999998 678999999999999999999999999999999999987775
Q ss_pred ------ceeEEEEe-------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCC-
Q psy23 226 ------NNICFSFL-------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKG- 285 (386)
Q Consensus 226 ------~h~i~~l~-------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~- 285 (386)
+|+||++. ...|+|+|||||||||..++.. .+.+++|+..||+||.+|++||.+|++++
T Consensus 205 n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~ 283 (338)
T cd01370 205 NATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNN-RGQRLKEGANINRSLLALGNCINALVDGKK 283 (338)
T ss_pred cCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCC-CCccccccchhhHHHHHHHHHHHHHHhccC
Confidence 59999992 2468999999999999887754 45667899999999999999999999877
Q ss_pred --CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 286 --AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 286 --~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
.|||||+||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 284 ~~~~ipyR~SkLT~lL~d~-Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 284 KNKHIPYRDSKLTRLLKDS-LGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCCcCCCcCCHHHHHHHHh-cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 89999999999999999 599999999999999999999999999999999986
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.6e-69 Score=576.14 Aligned_cols=277 Identities=30% Similarity=0.444 Sum_probs=249.7
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCC----CcccccchhhhhHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGK----TQDCKKGIYAMAAKD 148 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~----~~~~~~Gli~r~~~~ 148 (386)
.++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+..+. ....++|||||++++
T Consensus 130 ~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaled 209 (1320)
T PLN03188 130 NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFER 209 (1320)
T ss_pred eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999975321 234578999999999
Q ss_pred HHHHhcCCC----CCCceeeEEEEEEEEEcCeeeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccc
Q psy23 149 VFKLLKSPK----YRGLNLHVSASFFEIYSGKVFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSA 223 (386)
Q Consensus 149 LF~~~~~~~----~~~~~~~v~vS~~EIyne~v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~ 223 (386)
||..+.... .....|.|++||+|||||+|+|||++. ..+.+++|++++++|.|++++.|.+++|+.++|..|..+
T Consensus 210 LF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~n 289 (1320)
T PLN03188 210 LFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSN 289 (1320)
T ss_pred HHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhcc
Confidence 999986432 235689999999999999999999976 469999999999999999999999999999999999887
Q ss_pred cc------------ceeEEEEe--------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHH
Q psy23 224 SI------------NNICFSFL--------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKEC 277 (386)
Q Consensus 224 r~------------~h~i~~l~--------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~v 277 (386)
|. +|+||++. ...|+|+|||||||||..+++. .+.+++|++.||+||++|++|
T Consensus 290 R~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga-~G~RLkEA~~INKSLsaLGnV 368 (1320)
T PLN03188 290 RRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGA-AGDRLKEAGNINRSLSQLGNL 368 (1320)
T ss_pred ceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCc-ccHHHHHHHHHhHHHHHHHHH
Confidence 75 59999982 1368999999999999887754 456788999999999999999
Q ss_pred HHHHhc-----CCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCc
Q psy23 278 IRALGR-----KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPP 351 (386)
Q Consensus 278 I~aL~~-----~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~ 351 (386)
|.+|++ +..|||||+||||+||||+ |||||+|+||+||||...+++||++||+||+||++|+|.|++|.....
T Consensus 369 I~ALae~Sq~gk~~HIPYRDSKLTrLLQDS-LGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~ 446 (1320)
T PLN03188 369 INILAEISQTGKQRHIPYRDSRLTFLLQES-LGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446 (1320)
T ss_pred HHHHHHhhccCCCCcCCCCcchHHHHHHHh-cCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh
Confidence 999985 4579999999999999999 599999999999999999999999999999999999999999987544
No 7
>KOG0245|consensus
Probab=100.00 E-value=3.3e-70 Score=569.91 Aligned_cols=275 Identities=33% Similarity=0.456 Sum_probs=253.4
Q ss_pred ceeeeeEEcC---C----CCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHH
Q psy23 75 KLSRCWKVLS---L----KNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAK 147 (386)
Q Consensus 75 ~~f~fd~vf~---~----~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~ 147 (386)
..|.||+.|- . =++|..||+.+++|+++.+|+|||+||||||||||||||||+|-.+ +.++|||||+++
T Consensus 47 ~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~----~~e~GIIPrlCE 122 (1221)
T KOG0245|consen 47 PKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQE----PDEPGIIPRLCE 122 (1221)
T ss_pred CceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCC----CCCCCchhHHHH
Confidence 3599998763 2 2689999999999999999999999999999999999999999753 568999999999
Q ss_pred HHHHHhcCCCCCCceeeEEEEEEEEEcCeeeeccc-cc--ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhccccc
Q psy23 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLA-EK--AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSAS 224 (386)
Q Consensus 148 ~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~-~~--~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r 224 (386)
+||+++.....++..|.|.|||+|||+|+|+|||+ |+ .+|+++|+|.-|+||++|+.+.|+|+.|+..+++.|++.|
T Consensus 123 eLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqR 202 (1221)
T KOG0245|consen 123 ELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQR 202 (1221)
T ss_pred HHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhh
Confidence 99999999888899999999999999999999998 54 4699999999999999999999999999999999999888
Q ss_pred c------------ceeEEEE--------------eEEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHH
Q psy23 225 I------------NNICFSF--------------LQVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECI 278 (386)
Q Consensus 225 ~------------~h~i~~l--------------~~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI 278 (386)
+ +|+||+| ...+|+|+|||||||||...++ +.+++++||..|||||.+||+||
T Consensus 203 TtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstG-a~G~RLKEGa~INKSLtTLGkVI 281 (1221)
T KOG0245|consen 203 TTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTG-ANGDRLKEGANINKSLTTLGKVI 281 (1221)
T ss_pred hhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccC-CCccchhcccccchHHHHHHHHH
Confidence 7 4999999 3467999999999999987775 55788999999999999999999
Q ss_pred HHHhcC-------CCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCc
Q psy23 279 RALGRK-------GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPP 351 (386)
Q Consensus 279 ~aL~~~-------~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~ 351 (386)
.||++. +.+||||||.||.||++. |||||||+||+++||++.||+|||+|||||.|||.|+|.+++|+.+..
T Consensus 282 SALAe~~~~k~~ks~fIPYRDSVLTWLLkEn-LGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna 360 (1221)
T KOG0245|consen 282 SALAESQKGKKKKSDFIPYRDSVLTWLLKEN-LGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA 360 (1221)
T ss_pred HHHHHHhccCCCCCccccchHHHHHHHHHHh-cCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH
Confidence 999863 348999999999999999 699999999999999999999999999999999999999999999988
Q ss_pred hhhh
Q psy23 352 TIIQ 355 (386)
Q Consensus 352 ~~~~ 355 (386)
.++.
T Consensus 361 KLIR 364 (1221)
T KOG0245|consen 361 KLIR 364 (1221)
T ss_pred HHHH
Confidence 7654
No 8
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.5e-67 Score=523.80 Aligned_cols=270 Identities=35% Similarity=0.528 Sum_probs=247.0
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCC-----CcccccchhhhhHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGK-----TQDCKKGIYAMAAK 147 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~-----~~~~~~Gli~r~~~ 147 (386)
..+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+.... .....+|||||+++
T Consensus 46 ~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~ 125 (352)
T cd01364 46 STKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALY 125 (352)
T ss_pred cceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999975432 12457899999999
Q ss_pred HHHHHhcCCCCCCceeeEEEEEEEEEcCeeeeccccc----ccceEEEc--CCCceEEeccEEEEeCCHHHHHHHHHhcc
Q psy23 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK----AKLRVLED--GKQQVQIVGLTEQVVDSVEEVLKLIQHGN 221 (386)
Q Consensus 148 ~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----~~l~i~ed--~~~~~~v~~l~~~~V~s~~e~~~ll~~g~ 221 (386)
+||+.++.. +..|+|++||+|||+|+|+|||++. .++.++++ ..++++|.|++++.|.+++|+.++|+.|.
T Consensus 126 ~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~ 202 (352)
T cd01364 126 QLFEKLESQ---NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGS 202 (352)
T ss_pred HHHHHHHhc---cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHh
Confidence 999999874 5689999999999999999999875 47899999 58999999999999999999999999998
Q ss_pred cccc------------ceeEEEEe-------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHH
Q psy23 222 SASI------------NNICFSFL-------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKE 276 (386)
Q Consensus 222 ~~r~------------~h~i~~l~-------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~ 276 (386)
.+|. +|++|++. ...|+|+||||||+|+..+.+.. +.+.+|++.||+||.+|++
T Consensus 203 ~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~-~~~~~e~~~iN~SL~~L~~ 281 (352)
T cd01364 203 AKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAE-NKRAREAGNINQSLLTLGR 281 (352)
T ss_pred hhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCc-chhhHHHhhhhHHHHHHHH
Confidence 7764 59999982 13589999999999998777554 4667899999999999999
Q ss_pred HHHHHhcCCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q psy23 277 CIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEG 347 (386)
Q Consensus 277 vI~aL~~~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~ 347 (386)
||.+|++++.|+|||+|+||+||+|+ |||||+|+||+||||+..+++||++||+||+++++|+|.|.+|+
T Consensus 282 vi~al~~~~~~vpyR~S~LT~lL~~~-Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 282 VINALVEKSPHIPYRESKLTRLLQDS-LGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHHHcCCCCCCCcccHHHHHHHHh-cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999 59999999999999999999999999999999999999999986
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.2e-67 Score=522.63 Aligned_cols=250 Identities=30% Similarity=0.467 Sum_probs=231.6
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
.++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.
T Consensus 53 ~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~------~~~Gli~r~~~~lF~~ 126 (345)
T cd01368 53 KETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP------GDGGILPRSLDVIFNS 126 (345)
T ss_pred CceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCC------CCCchHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999974 4799999999999998
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccccc-------cceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA-------KLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-------~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~ 225 (386)
+.. |.|++||+|||||+|+|||++.. ++.+++|++++++|.|++++.|.|++|+.++|..|.++|.
T Consensus 127 ~~~-------~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~ 199 (345)
T cd01368 127 IGG-------YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRR 199 (345)
T ss_pred HHh-------eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccce
Confidence 865 89999999999999999998643 5899999999999999999999999999999999987775
Q ss_pred ------------ceeEEEEe------------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHH
Q psy23 226 ------------NNICFSFL------------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALK 275 (386)
Q Consensus 226 ------------~h~i~~l~------------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~ 275 (386)
+|+||++. ...|+|+||||||+||..++++ .+.+++|+..||+||.+|+
T Consensus 200 ~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~aL~ 278 (345)
T cd01368 200 VAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQN-TGERLKEAGNINTSLMTLG 278 (345)
T ss_pred eccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccc-cchhhhhhhhhhHHHHHHH
Confidence 59999982 1358999999999999988754 4567789999999999999
Q ss_pred HHHHHHhc------CCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q psy23 276 ECIRALGR------KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337 (386)
Q Consensus 276 ~vI~aL~~------~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 337 (386)
+||.+|++ +..|||||+||||+||||+ |||||+|+||+||||+..+++||++||+||++|+
T Consensus 279 ~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~-l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 279 KCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNY-FDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHh-cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999986 5689999999999999999 5999999999999999999999999999999985
No 10
>KOG0240|consensus
Probab=100.00 E-value=4.3e-69 Score=536.85 Aligned_cols=278 Identities=37% Similarity=0.495 Sum_probs=256.1
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhc
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLK 154 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~ 154 (386)
+.|.||+||.++++|++||+..+.|+|++||.|||+||||||||||||||||.|... +....|||||++++||.++.
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~---d~~~~GIipRi~~diF~~Iy 125 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGH---DPEEMGIIPRILNDIFDHIY 125 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCC---ChhhcCcHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999999633 33466999999999999998
Q ss_pred CCCCCCceeeEEEEEEEEEcCeeeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--------
Q psy23 155 SPKYRGLNLHVSASFFEIYSGKVFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-------- 225 (386)
Q Consensus 155 ~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-------- 225 (386)
... ....|.|+|||+|||+|+++|||++. .++.++||.+..++|+|+++..|.+++++++.++.|..+|+
T Consensus 126 s~~-~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~ 204 (607)
T KOG0240|consen 126 SME-ENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNE 204 (607)
T ss_pred cCc-ccceEEEEEEeehhhhhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccc
Confidence 876 45899999999999999999999975 57999999999999999999999999999999999988776
Q ss_pred ----ceeEEEE----------eEEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcC-CCcccC
Q psy23 226 ----NNICFSF----------LQVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK-GAHLPF 290 (386)
Q Consensus 226 ----~h~i~~l----------~~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~-~~~vPy 290 (386)
+|.||++ ....|+|+||||||+|+..++++ .+..+.|+++||+||.|||+||++|+++ ..||||
T Consensus 205 ~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGSEkvsKtga-~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipY 283 (607)
T KOG0240|consen 205 HSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGSEKVSKTGA-EGAVLEEAKNINKSLSALGNVINALAEGPKSHIPY 283 (607)
T ss_pred cccccceEEEEEEEeccccchhhccccEEEEEcccccccCCCCc-cchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcc
Confidence 5999999 23569999999999999999864 4567889999999999999999999997 899999
Q ss_pred CCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhhhhcc
Q psy23 291 RASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQRQS 358 (386)
Q Consensus 291 RdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~~~~~ 358 (386)
|||||||||||+ |||||+|.+|.|++|+..+..||.+||+|+.||+.|+|.+.+|..-......+..
T Consensus 284 RDSKLTRILqdS-LGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~ 350 (607)
T KOG0240|consen 284 RDSKLTRILQDS-LGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKL 350 (607)
T ss_pred hhhHHHHHHHHH-hCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHH
Confidence 999999999999 6999999999999999999999999999999999999999999877666655543
No 11
>KOG0242|consensus
Probab=100.00 E-value=4.1e-69 Score=567.19 Aligned_cols=275 Identities=37% Similarity=0.534 Sum_probs=254.8
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
...|.||+||+++++|++||+..++|+|+++++|||+||||||||||||||||.|.. .+|||||+++.+||+.+
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~------~~PGii~la~~dif~~I 125 (675)
T KOG0242|consen 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSE------DDPGIIPLAMKDIFEKI 125 (675)
T ss_pred ccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccC------CCCCeeehHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999973 47999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeeccccccc-ceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK-LRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~-l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------- 225 (386)
.... +..|.|.+||+|||||.|+|||++..+ +.++||+.++++|.||++..|.|++++..+|..|+.+|+
T Consensus 126 ~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N 203 (675)
T KOG0242|consen 126 DKSG--EREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLN 203 (675)
T ss_pred HhcC--CceeEEEEEEEEEeccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccc
Confidence 9876 789999999999999999999998865 999999999999999999999999999999999998887
Q ss_pred -----ceeEEEEeE---------EeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcC--CCccc
Q psy23 226 -----NNICFSFLQ---------VHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK--GAHLP 289 (386)
Q Consensus 226 -----~h~i~~l~~---------~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~--~~~vP 289 (386)
+|+||++.. ..++|+|||||||||.+++++. +.+++||.+||+||.+||+||++|+++ ..|||
T Consensus 204 ~~SSRSHaIl~i~i~s~~~~~~~~~s~L~lIDLAGSERas~T~~~-G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hip 282 (675)
T KOG0242|consen 204 EQSSRSHAILRITVESRGREASSRVSKLNLIDLAGSERASRTGNE-GVRLKEGAHINRSLLALGTVINKLSEGKRPRHIP 282 (675)
T ss_pred cccchhhheeeEEEEeccccccchhheehhhhhhhhhhhhhhhcc-ceeccccchhhHHHHHHHHHHHHHccccccCCCC
Confidence 599999921 4578999999999999888765 456689999999999999999999885 56899
Q ss_pred CCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhhhhcc
Q psy23 290 FRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQRQS 358 (386)
Q Consensus 290 yRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~~~~~ 358 (386)
|||||||||||++ |||||+|.|||||+|+..+++||.+||+||+|||+|+++...|....+..+....
T Consensus 283 YRDSKLTRiLq~s-LgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~ 350 (675)
T KOG0242|consen 283 YRDSKLTRLLQDS-LGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYL 350 (675)
T ss_pred ccccHHHHhchhh-cCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHH
Confidence 9999999999999 6999999999999999999999999999999999999999999887776655543
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6.4e-68 Score=520.34 Aligned_cols=254 Identities=61% Similarity=0.902 Sum_probs=239.8
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.||+||+++++|++||+.+++|+|+++++|+|+||||||||||||||||+|+. .++|||||++++||+.+
T Consensus 50 ~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~------~~~Glipr~~~~lf~~~ 123 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDE------NQEGLYALAARDIFRLL 123 (322)
T ss_pred CceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcC------CcCccHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999974 47999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-------- 225 (386)
+... ..|.|++||+|||+|+++|||++.+++.+++++.+++++.|++++.|.|++|+.++|+.|..+|.
T Consensus 124 ~~~~---~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~ 200 (322)
T cd01367 124 AQPN---DDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGAND 200 (322)
T ss_pred hccc---cccEEEEEEEeeecCchhhhccCccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCC
Confidence 8754 68999999999999999999999999999999999999999999999999999999999987775
Q ss_pred ----ceeEEEEe-------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCc
Q psy23 226 ----NNICFSFL-------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASK 294 (386)
Q Consensus 226 ----~h~i~~l~-------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSk 294 (386)
+|++|++. ...|+|+||||||+|+..+.....+++++|+..||+||.+|++||.+|++++.||||||||
T Consensus 201 ~SSRSH~i~~i~v~~~~~~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSk 280 (322)
T cd01367 201 QSSRSHAILQIILKNKKLNKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSK 280 (322)
T ss_pred CcccceEEEEEEEEEecCCeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence 59999993 3468999999999999888766667888999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q psy23 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337 (386)
Q Consensus 295 LT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 337 (386)
||+||||+ |||||+|+||+||||...+++||++||+||+|+|
T Consensus 281 LT~lL~~~-L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 281 LTQVLRDS-FIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHh-hCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999 5999999999999999999999999999999986
No 13
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3e-67 Score=522.25 Aligned_cols=266 Identities=35% Similarity=0.497 Sum_probs=245.6
Q ss_pred CCceeeeeEEcCCC-------CChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhh
Q psy23 73 GNKLSRCWKVLSLK-------NTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMA 145 (386)
Q Consensus 73 ~~~~f~fd~vf~~~-------~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~ 145 (386)
..+.|.||+||++. ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.. ++|||||+
T Consensus 46 ~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~------~~Gli~r~ 119 (356)
T cd01365 46 KPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE------EKGIIPRL 119 (356)
T ss_pred CceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCC------CCchHHHH
Confidence 35689999999998 999999999999999999999999999999999999999999743 78999999
Q ss_pred HHHHHHHhcCCCCCCceeeEEEEEEEEEcCeeeeccccc----ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcc
Q psy23 146 AKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK----AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGN 221 (386)
Q Consensus 146 ~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~ 221 (386)
+++||+.++....++..|.|++||+|||||+|+|||++. ..+.+++++.+++++.|++++.|.|++|+..++..|.
T Consensus 120 ~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~ 199 (356)
T cd01365 120 CEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGN 199 (356)
T ss_pred HHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHH
Confidence 999999998876557899999999999999999999977 3789999999999999999999999999999999998
Q ss_pred cccc------------ceeEEEEe--------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHH
Q psy23 222 SASI------------NNICFSFL--------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALK 275 (386)
Q Consensus 222 ~~r~------------~h~i~~l~--------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~ 275 (386)
++|. +|+||++. ...|+|+||||||+|+..+.+. .+.+++|+..||+||.+|+
T Consensus 200 ~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~-~~~~~~E~~~IN~SL~aL~ 278 (356)
T cd01365 200 KSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGA-EGDRLKEGSNINKSLTTLG 278 (356)
T ss_pred hcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccc-cchhhHHHHHHhHHHHHHH
Confidence 7775 59999992 2468999999999999888754 4567789999999999999
Q ss_pred HHHHHHhcC--------CCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCC
Q psy23 276 ECIRALGRK--------GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTE 346 (386)
Q Consensus 276 ~vI~aL~~~--------~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~ 346 (386)
+||.+|++. ..|||||+||||+||+|+ |||||+|+||+||+|...+++||++||+||+++++|++.|++|
T Consensus 279 ~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~-lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 279 KVISALADNSSAKSKKKSSFIPYRDSVLTWLLKEN-LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHh-cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999863 589999999999999999 5999999999999999999999999999999999999999875
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.3e-66 Score=514.90 Aligned_cols=296 Identities=35% Similarity=0.541 Sum_probs=257.8
Q ss_pred eeeeeeccCCCCCCCCCCCCccc-----cCceeecCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeee
Q psy23 41 ELDALFSLNSNLMPKTNNENSQY-----NNCRSMPLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAY 115 (386)
Q Consensus 41 ~~~~i~~~n~~l~p~~~~~~~~~-----~~~~~~~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aY 115 (386)
++++++++.|- .+++....... +......+..++.|.||+||+++++|++||+.+++|+|+++++|+|+|||||
T Consensus 2 ~i~V~vRvRP~-~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ay 80 (341)
T cd01372 2 SVRVAVRVRPL-LPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAY 80 (341)
T ss_pred CeEEEEECCCC-CchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeee
Confidence 56778888884 33443332211 1122333445789999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcCCCCCCceeeEEEEEEEEEcCeeeeccccc----ccceEEE
Q psy23 116 GQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK----AKLRVLE 191 (386)
Q Consensus 116 GqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----~~l~i~e 191 (386)
|||||||||||+|+..+.....++|||||++++||+.++... ...+|.|.+||+|||||+|+|||++. ..+.+++
T Consensus 81 G~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e 159 (341)
T cd01372 81 GQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK-DEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIRE 159 (341)
T ss_pred cCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhcc-ccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEE
Confidence 999999999999986543446689999999999999998765 35789999999999999999999875 4799999
Q ss_pred cCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------------ceeEEEEe--------------------EEeeeE
Q psy23 192 DGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------------NNICFSFL--------------------QVHGKF 239 (386)
Q Consensus 192 d~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------------~h~i~~l~--------------------~~~s~L 239 (386)
++++++++.|++++.|.+++|++.+|..|..+|. +|+||++. ...|+|
T Consensus 160 ~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l 239 (341)
T cd01372 160 DSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKF 239 (341)
T ss_pred CCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEE
Confidence 9999999999999999999999999999987765 59999982 246899
Q ss_pred EEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCC---CcccCCCCccccccccccCCCCCeEEEEEEe
Q psy23 240 SLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKG---AHLPFRASKLTQVLRDSFIGDKSRTCMIAMI 316 (386)
Q Consensus 240 ~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~---~~vPyRdSkLT~lL~d~llggns~t~~I~~v 316 (386)
+||||||+|+..+... .+.+++|+..||+||.+|++||.+|+.++ .|+|||+|+||+||+|+ |||||+|+||+||
T Consensus 240 ~~VDLAGsE~~~~~~~-~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~-Lgg~s~t~~I~~v 317 (341)
T cd01372 240 HFVDLAGSERLKKTGA-TGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDS-LGGNSHTLMIACV 317 (341)
T ss_pred EEEECCCCcccccccC-chhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHh-cCCCceEEEEEEe
Confidence 9999999999877654 45677899999999999999999999876 79999999999999999 5999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccc
Q psy23 317 SPGMSSCEHSLNTLRYADRVKELA 340 (386)
Q Consensus 317 sp~~~~~~eTl~TL~fa~r~~~i~ 340 (386)
||...+++||++||+||+|+|+||
T Consensus 318 sp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 318 SPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999986
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5.4e-66 Score=506.18 Aligned_cols=253 Identities=35% Similarity=0.502 Sum_probs=234.7
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+. .++|||||++++||+.+
T Consensus 46 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~------~~~Glipr~~~~Lf~~~ 119 (319)
T cd01376 46 TKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDP------NEPGLIPRTLSDLLRMG 119 (319)
T ss_pred ccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCc------CccchHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999974 37899999999999988
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccc-cccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAE-KAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~-~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------- 225 (386)
+.. .+.+.|++||+|||+|+|+|||++ ...+.+++++.+++++.|++++.|.+++|+..++..|.++|.
T Consensus 120 ~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n 196 (319)
T cd01376 120 RKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLN 196 (319)
T ss_pred hhc---cccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCC
Confidence 764 368999999999999999999997 567999999999999999999999999999999999987664
Q ss_pred -----ceeEEEEe--------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCC
Q psy23 226 -----NNICFSFL--------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRA 292 (386)
Q Consensus 226 -----~h~i~~l~--------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRd 292 (386)
+|+||++. ...|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|++||.+|+.+..|+|||+
T Consensus 197 ~~SSRSH~i~~i~v~~~~~~~~~~s~l~~VDLAGsE~~~~~~-~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~ 275 (319)
T cd01376 197 DNSSRSHAVLRIKVTQPASNIQLEGKLNLIDLAGSEDNRRTG-NEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRE 275 (319)
T ss_pred CccCCCeEEEEEEEEEECCCceEEEEEEEEECCCCCcccccC-CccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCcc
Confidence 59999992 356899999999999977765 3456778999999999999999999999999999999
Q ss_pred CccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q psy23 293 SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337 (386)
Q Consensus 293 SkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 337 (386)
|+||+||+|+ |||||+|+||+||||...+++||++||+||+|+|
T Consensus 276 S~LT~lL~~~-L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 276 SKLTRLLQDS-LGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CHHHHHHHHh-cCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999 5999999999999999999999999999999986
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.1e-65 Score=506.87 Aligned_cols=260 Identities=37% Similarity=0.506 Sum_probs=238.9
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.. ....+|||||++++||+.
T Consensus 46 ~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~---~~~~~Glipr~~~~Lf~~ 122 (333)
T cd01371 46 PPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE---PPELRGIIPNSFAHIFGH 122 (333)
T ss_pred CCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCC---cccccchHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999743 245799999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccccc--cceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-----
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA--KLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI----- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~--~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~----- 225 (386)
++..+ +..|.|++||+|||+|+|+|||++.. .+.+++++.++++|.|++++.|.+++|+..++..|.++|.
T Consensus 123 ~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~ 200 (333)
T cd01371 123 IAKAE--NVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATN 200 (333)
T ss_pred Hhhcc--CccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCcccccc
Confidence 98765 37899999999999999999999765 7899999999999999999999999999999999987765
Q ss_pred -------ceeEEEEe-------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCC
Q psy23 226 -------NNICFSFL-------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKG 285 (386)
Q Consensus 226 -------~h~i~~l~-------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~ 285 (386)
+|++|++. ...|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|++||.+|++++
T Consensus 201 ~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~-~~~~~~~E~~~iN~sL~~L~~vi~al~~~~ 279 (333)
T cd01371 201 MNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTG-ATGDRLKEATKINLSLSALGNVISALVDGK 279 (333)
T ss_pred ccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccC-CchhhhHhHhhhhhHHHHHHHHHHHHHhCC
Confidence 59999992 135899999999999987775 445677899999999999999999999876
Q ss_pred C-cccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 286 A-HLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 286 ~-~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
. |||||+||||+||+|+ |||||+|+||+||+|...+++||++||+||+|+|+|
T Consensus 280 ~~~ipyR~SkLT~lL~~~-l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 280 STHIPYRDSKLTRLLQDS-LGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred CCcCCCccCHHHHHHHHh-cCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 5 9999999999999999 599999999999999999999999999999999986
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.5e-65 Score=503.54 Aligned_cols=256 Identities=38% Similarity=0.575 Sum_probs=238.9
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||+||+++++|++||+.+++|+|+++++|+|+||||||||||||||||+|+. .++|||||++++||+.
T Consensus 38 ~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~------~~~Gli~r~~~~lf~~ 111 (321)
T cd01374 38 PGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDE------QEPGIIPLAVRDIFQR 111 (321)
T ss_pred CCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCC------CCCchHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999973 4789999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------ 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------ 225 (386)
++... +..|.|++||+|||||+|+|||++. ..+++++++.+++++.|++++.|.|++|+..+|..|.++|.
T Consensus 112 ~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~ 189 (321)
T cd01374 112 IQDTP--DREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDF 189 (321)
T ss_pred Hhccc--CceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcC
Confidence 98755 5689999999999999999999988 78999999999999999999999999999999999987775
Q ss_pred ------ceeEEEEe-------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCC-
Q psy23 226 ------NNICFSFL-------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKG- 285 (386)
Q Consensus 226 ------~h~i~~l~-------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~- 285 (386)
+|++|++. ...|+|+||||||+|+..+.+ .+.+++|+..||+||.+|++||.+|++++
T Consensus 190 n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~--~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~ 267 (321)
T cd01374 190 NERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG--AGERRKEGSFINKSLLTLGTVISKLSEGKN 267 (321)
T ss_pred CCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC--CCccccccchhhhHHHHHHHHHHHHHhcCC
Confidence 59999992 135899999999999988776 56677899999999999999999999975
Q ss_pred -CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 286 -AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 286 -~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
.|||||+||||+||+|+ |||||+|+||+||||...+++||++||+||+|+++|
T Consensus 268 ~~~vpyR~SkLT~lL~~~-L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 268 SGHIPYRDSKLTRILQPS-LSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred CCcCCCcCCHHHHHHHHh-cCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 599999999999999999999999999999999986
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.7e-65 Score=505.55 Aligned_cols=257 Identities=35% Similarity=0.512 Sum_probs=236.0
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
....|.||+||++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.. ...++|||||++++||+.
T Consensus 46 ~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~---~~~~~Glipr~~~~lf~~ 121 (334)
T cd01375 46 EDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTE---SYKDRGLIPRALEQVFRE 121 (334)
T ss_pred CceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCC---cccCCchHHHHHHHHHHH
Confidence 4568999999999 999999999999999999999999999999999999999999743 234789999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeeccccc-------ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK-------AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-------~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~ 225 (386)
++... +..|.|++||+|||||+++|||++. +.+.+++++.++++|.|++++.|.+++|++.++..|..+|.
T Consensus 122 ~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~ 199 (334)
T cd01375 122 VAMRA--TKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRT 199 (334)
T ss_pred HHhcc--CcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcc
Confidence 98754 5689999999999999999999987 46899999999999999999999999999999999987766
Q ss_pred ------------ceeEEEEe------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHH
Q psy23 226 ------------NNICFSFL------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL 281 (386)
Q Consensus 226 ------------~h~i~~l~------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL 281 (386)
+|+||++. ...|+|+||||||+|+..+.+. .+..++|++.||+||.+|++||.+|
T Consensus 200 ~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~-~~~~~~e~~~iN~SL~~L~~vi~~l 278 (334)
T cd01375 200 IAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGV-SGQVLKEAKYINKSLSFLEQVINAL 278 (334)
T ss_pred cccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccC-chhhhhhhhhhhhhHHHHHHHHHHH
Confidence 59999982 3458999999999999877654 4566789999999999999999999
Q ss_pred hcCC-CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q psy23 282 GRKG-AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337 (386)
Q Consensus 282 ~~~~-~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 337 (386)
++++ .||||||||||+||+|+ |||||+|+||+||||...+++||++||+||+|++
T Consensus 279 ~~~~~~~ipyRdSkLT~lL~d~-Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 279 SEKARTHVPYRNSKLTHVLRDS-LGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HhCCCCCCCCcccHHHHHHHHh-cCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9988 99999999999999999 5999999999999999999999999999999985
No 19
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4.2e-65 Score=501.14 Aligned_cols=261 Identities=41% Similarity=0.561 Sum_probs=240.3
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+... ..++||+||++++||+.
T Consensus 41 ~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~---~~~~Giipr~~~~Lf~~ 117 (325)
T cd01369 41 DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGD---PELKGIIPRIVHDIFEH 117 (325)
T ss_pred CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCc---cccCChHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999997432 34789999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------ 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------ 225 (386)
+.... ....|.|++||+|||+|+++|||++. ..+.+++++.++++++|++++.|.|++|+..+|..|.++|.
T Consensus 118 ~~~~~-~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~ 196 (325)
T cd01369 118 ISSMD-ENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNM 196 (325)
T ss_pred Hhhcc-CCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcC
Confidence 98764 56789999999999999999999875 56999999999999999999999999999999999988775
Q ss_pred ------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCC-Ccc
Q psy23 226 ------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKG-AHL 288 (386)
Q Consensus 226 ------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~-~~v 288 (386)
+|++|++. ...|+|+||||||+|+..+.+ ..+..++|+..||+||.+|++||.+|++++ .|+
T Consensus 197 n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~v 275 (325)
T cd01369 197 NEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSKTG-AEGQTLEEAKKINKSLSALGNVINALTDGKSTHI 275 (325)
T ss_pred CCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcccccC-CcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcC
Confidence 59999992 356999999999999987764 445677899999999999999999999977 999
Q ss_pred cCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 289 PFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 289 PyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
|||+|+||+||+|+ |||+|+|+||+||||...+++||++||+||+|+|+|
T Consensus 276 pyR~S~LT~lL~~~-L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 276 PYRDSKLTRILQDS-LGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred CCccCHHHHHHHHh-cCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999 599999999999999999999999999999999986
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=7.8e-64 Score=492.89 Aligned_cols=260 Identities=38% Similarity=0.516 Sum_probs=241.7
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||+||+++++|++||+. ++|+|+++++|+|+||||||+|||||||||+|+. .++||+||++++||+.
T Consensus 43 ~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~------~~~Gli~r~~~~lf~~ 115 (329)
T cd01366 43 KKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPP------ENPGIIPRALEQLFNT 115 (329)
T ss_pred CceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCC------CCCCcHHHHHHHHHHH
Confidence 45789999999999999999998 5999999999999999999999999999999974 5799999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeeccccc----ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc---
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK----AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI--- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~--- 225 (386)
++....++..|.|.+||+|||+|+++|||++. ..+.+++++.+++++.|++++.|.|++|+..++..|..+|.
T Consensus 116 ~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~ 195 (329)
T cd01366 116 AEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVAS 195 (329)
T ss_pred HHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhccccc
Confidence 98877667899999999999999999999974 57999999999999999999999999999999999987775
Q ss_pred ---------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCC
Q psy23 226 ---------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA 286 (386)
Q Consensus 226 ---------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~ 286 (386)
+|++|++. ...|+|+||||||+|+..+.+. .+.+++|+..||+||.+|++||.+|+.+..
T Consensus 196 t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~~~~~~-~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~ 274 (329)
T cd01366 196 TNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERLKKSGA-TGDRLKEAQAINKSLSALGDVISALRSKDS 274 (329)
T ss_pred ccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCcccccccc-cchhhHhHhhhhhHHHHHHHHHHHHhcCCC
Confidence 49999992 4568999999999999887654 455678999999999999999999999999
Q ss_pred cccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc
Q psy23 287 HLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAA 341 (386)
Q Consensus 287 ~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~ 341 (386)
|+|||+|+||+||+|+ |||+|+|+||+||||...+++||++||+||+++++|++
T Consensus 275 ~ipyr~S~LT~lL~~~-l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 275 HVPYRNSKLTYLLQDS-LGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred cCCCcccHhHHHHHHh-cCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999 59999999999999999999999999999999999986
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.6e-64 Score=498.64 Aligned_cols=264 Identities=39% Similarity=0.592 Sum_probs=239.7
Q ss_pred CCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHH
Q psy23 71 LSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVF 150 (386)
Q Consensus 71 ~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF 150 (386)
....+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+ ....++|||||++++||
T Consensus 37 ~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~----~~~~~~Gli~~~~~~lf 112 (335)
T PF00225_consen 37 SQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGS----NDPSEPGLIPRALRDLF 112 (335)
T ss_dssp TTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBS----TSTTTBSHHHHHHHHHH
T ss_pred CCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecccccccccccccc----ccccccchhhhHHHHHh
Confidence 34557899999999999999999999999999999999999999999999999999997 22457999999999999
Q ss_pred HHhcCCCCC-CceeeEEEEEEEEEcCeeeeccccc-----ccceEEEcCCCc-eEEeccEEEEeCCHHHHHHHHHhcccc
Q psy23 151 KLLKSPKYR-GLNLHVSASFFEIYSGKVFDLLAEK-----AKLRVLEDGKQQ-VQIVGLTEQVVDSVEEVLKLIQHGNSA 223 (386)
Q Consensus 151 ~~~~~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~-----~~l~i~ed~~~~-~~v~~l~~~~V~s~~e~~~ll~~g~~~ 223 (386)
+.++..... ...|.|++||+|||+|+|+|||++. .++.+++++..+ +++.|++++.|.+++|+..+|..|.++
T Consensus 113 ~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~ 192 (335)
T PF00225_consen 113 SQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKN 192 (335)
T ss_dssp HHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeeccccccccccccccccccchhhc
Confidence 999875532 4689999999999999999999987 469999999866 999999999999999999999999776
Q ss_pred cc------------ceeEEEEe--------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHH
Q psy23 224 SI------------NNICFSFL--------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKEC 277 (386)
Q Consensus 224 r~------------~h~i~~l~--------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~v 277 (386)
|. +|+||++. ...|+|+||||||+|+..+....++...+|+..||+||.+|++|
T Consensus 193 R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~v 272 (335)
T PF00225_consen 193 RRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNV 272 (335)
T ss_dssp HTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhh
Confidence 64 59999991 36789999999999998887665567788999999999999999
Q ss_pred HHHHhcC--CCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 278 IRALGRK--GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 278 I~aL~~~--~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
|.+|+.+ ..|+|||+||||+||+|+ |||||+|+||+||+|...+++||++||+||+++|+|
T Consensus 273 i~~L~~~~~~~~vpyr~SkLT~lL~d~-l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 273 IRALAQGSKQSHVPYRDSKLTRLLKDS-LGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHCTTSTSSSCGGGSHHHHHTGGG-TSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred Hhhhhccccchhhhhhcccccceeccc-ccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999998 999999999999999999 599999999999999999999999999999999987
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=8.5e-62 Score=479.45 Aligned_cols=266 Identities=42% Similarity=0.583 Sum_probs=244.1
Q ss_pred CCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHH
Q psy23 72 SGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFK 151 (386)
Q Consensus 72 ~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~ 151 (386)
...+.|.||+||+++++|+++|+.++.|+|+.+++|+|+|||+||++||||||||+|+. .++||+||++++||+
T Consensus 43 ~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~------~~~Gli~~~~~~Lf~ 116 (335)
T smart00129 43 KEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTP------DSPGIIPRALKDLFE 116 (335)
T ss_pred CCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCC------CCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999973 368999999999999
Q ss_pred HhcCCCCCCceeeEEEEEEEEEcCeeeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-----
Q psy23 152 LLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI----- 225 (386)
Q Consensus 152 ~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~----- 225 (386)
.+.... .+..|.|++||+|||+|+++|||++. ..+.+++++.+++++.|++++.|.|++|+.+++..|..+|.
T Consensus 117 ~~~~~~-~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~ 195 (335)
T smart00129 117 KIDKLE-EGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATK 195 (335)
T ss_pred Hhhhcc-cCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCC
Confidence 997654 35789999999999999999999864 56899999999999999999999999999999999977665
Q ss_pred -------ceeEEEEe------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhc--C
Q psy23 226 -------NNICFSFL------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR--K 284 (386)
Q Consensus 226 -------~h~i~~l~------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~--~ 284 (386)
+|++|++. ...|+|+||||||+|+..+.+ ..+.+++|+..||+||.+|++||.+|++ +
T Consensus 196 ~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~-~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~ 274 (335)
T smart00129 196 MNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTG-AEGDRLKEAGNINKSLSALGNVINALADGQK 274 (335)
T ss_pred CCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCcccccc-ChhHHHHhhchhhhHHHHHHHHHHHHHhcCC
Confidence 59999983 247999999999999987764 4456778999999999999999999998 6
Q ss_pred CCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCC
Q psy23 285 GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTE 346 (386)
Q Consensus 285 ~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~ 346 (386)
..|+|||+|+||+||+++ |||+++++||+||+|...+++||++||+||+++++|++.|+.+
T Consensus 275 ~~~ip~r~S~LT~lL~~~-L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 275 SRHIPYRDSKLTRLLQDS-LGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred CCCCCCcCcHhHHHHHHH-cCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 789999999999999999 5999999999999999999999999999999999999999864
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.7e-61 Score=475.79 Aligned_cols=257 Identities=42% Similarity=0.575 Sum_probs=239.0
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
.++.|.||+||+++++|++||+.+++|+|+++++|+|+|||+||++||||||||+|+. .++|||||++++||+.
T Consensus 43 ~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~------~~~Gli~~~~~~Lf~~ 116 (328)
T cd00106 43 GPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSP------KDPGIIPRALEDLFNL 116 (328)
T ss_pred CceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCC------CCCchHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999974 4799999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccc---cccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc----
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAE---KAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI---- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~---~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~---- 225 (386)
++........+.|.+||+|||+|+|+|||++ ..++.+++++++++++.|++++.|.|++|+..++..|..+|.
T Consensus 117 ~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t 196 (328)
T cd00106 117 IDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTAST 196 (328)
T ss_pred HhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccC
Confidence 9887644678999999999999999999998 678999999999999999999999999999999999987765
Q ss_pred --------ceeEEEEe------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCC
Q psy23 226 --------NNICFSFL------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKG 285 (386)
Q Consensus 226 --------~h~i~~l~------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~ 285 (386)
+|++|++. ...|+|+||||||+|+..+.+ ..+....|++.||+||.+|++||.+|+.+.
T Consensus 197 ~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~-~~~~~~~e~~~in~sl~~L~~vl~~l~~~~ 275 (328)
T cd00106 197 AMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTG-AEGDRLKEAKNINKSLSALGNVISALSSGQ 275 (328)
T ss_pred cCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccC-CchhhhHhHHhhhhhHHHHHHHHHHHHhcC
Confidence 59999992 457899999999999987764 455677899999999999999999999988
Q ss_pred --CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q psy23 286 --AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337 (386)
Q Consensus 286 --~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 337 (386)
.|+|||+||||+||||+ |||+++|+||+||+|...+++||++||+||+|+|
T Consensus 276 ~~~~ip~r~SkLT~lL~~~-l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 276 KKKHIPYRDSKLTRLLQDS-LGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred CCCcCCCcCcHHHHHHHHh-cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999 5999999999999999999999999999999986
No 24
>KOG0241|consensus
Probab=100.00 E-value=3e-63 Score=510.56 Aligned_cols=276 Identities=34% Similarity=0.499 Sum_probs=253.7
Q ss_pred CCCceeeeeEEcCCC-------CChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhh
Q psy23 72 SGNKLSRCWKVLSLK-------NTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAM 144 (386)
Q Consensus 72 ~~~~~f~fd~vf~~~-------~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r 144 (386)
.+.+.|.||+.|-+- +.|+.||+.++..+++++|+|||+||||||||||||||||+|.. .++|||||
T Consensus 50 k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~------~QpGiIPr 123 (1714)
T KOG0241|consen 50 KGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTA------EQPGIIPR 123 (1714)
T ss_pred CCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccC------CCCCchhH
Confidence 456899999999743 58999999999999999999999999999999999999999974 48999999
Q ss_pred hHHHHHHHhcCCCCCCceeeEEEEEEEEEcCeeeecccccc---cceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcc
Q psy23 145 AAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA---KLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGN 221 (386)
Q Consensus 145 ~~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~---~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~ 221 (386)
++..||+.++........|+|.+||+|||||++||||+|+. .++++++.--|+++.||++..|.|++|+..++..|+
T Consensus 124 lc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egn 203 (1714)
T KOG0241|consen 124 LCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGN 203 (1714)
T ss_pred HHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhcc
Confidence 99999999998888889999999999999999999999875 489999999999999999999999999999999999
Q ss_pred cccc------------ceeEEEEe--------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHH
Q psy23 222 SASI------------NNICFSFL--------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALK 275 (386)
Q Consensus 222 ~~r~------------~h~i~~l~--------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~ 275 (386)
++|+ +|++|.+. ...|+|.+|||||+||..+++.. +.+++|+.+||+||..|+
T Consensus 204 Ksrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~-g~rlkegsNinkSLttLg 282 (1714)
T KOG0241|consen 204 KSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAA-GSRLKEGSNINKSLTTLG 282 (1714)
T ss_pred ccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccch-hhhhhhcCCcchhhHHHH
Confidence 8876 49999982 24589999999999999998654 567899999999999999
Q ss_pred HHHHHHhc------CCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCC
Q psy23 276 ECIRALGR------KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPP 349 (386)
Q Consensus 276 ~vI~aL~~------~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~ 349 (386)
.||.+|++ +.++||||||.||.||||. |||||+|+||+||||+..+|+|||+|||||+|||+|+|+..+|..+
T Consensus 283 lVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~-LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedp 361 (1714)
T KOG0241|consen 283 LVISALADQKNGKGKDKFVPYRDSVLTWLLKDN-LGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDP 361 (1714)
T ss_pred HHHHHHHHhhcCCCccccccchhHHHHHHHHhh-cCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCc
Confidence 99999986 3569999999999999999 6999999999999999999999999999999999999999999977
Q ss_pred Cchhhh
Q psy23 350 PPTIIQ 355 (386)
Q Consensus 350 ~~~~~~ 355 (386)
....+.
T Consensus 362 narvir 367 (1714)
T KOG0241|consen 362 NARVIR 367 (1714)
T ss_pred hHHHHH
Confidence 655543
No 25
>KOG0239|consensus
Probab=100.00 E-value=1.7e-62 Score=515.35 Aligned_cols=266 Identities=35% Similarity=0.497 Sum_probs=246.6
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcC
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~ 155 (386)
.|.||+||+|.++|++||.. +.|+|+++|+|||+||||||||||||||||.|+ ...++|||||++++||..++.
T Consensus 361 ~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~-----~~~~~Giipral~~lF~~~~~ 434 (670)
T KOG0239|consen 361 SFKFDKVFGPLASQDDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP-----TPEDPGIIPRALEKLFRTITS 434 (670)
T ss_pred cceeeeecCCcccHHHHHHH-HHHHHHHHhcCcceeEEEecccCCCccccccCC-----CcccCCccHHHHHHHHHHHHh
Confidence 49999999999999999998 589999999999999999999999999999995 234799999999999999999
Q ss_pred CCCCCceeeEEEEEEEEEcCeeeeccccc---ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-------
Q psy23 156 PKYRGLNLHVSASFFEIYSGKVFDLLAEK---AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------- 225 (386)
Q Consensus 156 ~~~~~~~~~v~vS~~EIyne~v~DLL~~~---~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------- 225 (386)
... +|.|.+.+||+|||||+|+|||.+. .++.|+.+++++++|.+++.+.|.+.+|+..+++.|.++|.
T Consensus 435 ~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~N 513 (670)
T KOG0239|consen 435 LKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASN 513 (670)
T ss_pred hcc-CceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccc
Confidence 886 9999999999999999999999876 47899999999999999999999999999999999988876
Q ss_pred -----ceeEEEE----------eEEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccC
Q psy23 226 -----NNICFSF----------LQVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPF 290 (386)
Q Consensus 226 -----~h~i~~l----------~~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPy 290 (386)
+|++|++ ....+.|+|||||||||+++++. .+.+++|+++||+||++|++||.||+.+..||||
T Consensus 514 e~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~-tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPy 592 (670)
T KOG0239|consen 514 ERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGV-TGERLKEAQNINKSLSALGDVISALASKRSHIPY 592 (670)
T ss_pred hhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCC-chhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcc
Confidence 5999999 34568999999999999888754 4678889999999999999999999999999999
Q ss_pred CCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCC
Q psy23 291 RASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPP 350 (386)
Q Consensus 291 RdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~ 350 (386)
||||||+|||++ |||++||+|+++|||...++.||+++|+||+|++.+...+.......
T Consensus 593 RNSKLT~lLq~s-LGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~ 651 (670)
T KOG0239|consen 593 RNSKLTQLLQDS-LGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVST 651 (670)
T ss_pred cccchHHHhHhh-hCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccc
Confidence 999999999999 69999999999999999999999999999999999998876655433
No 26
>KOG0244|consensus
Probab=100.00 E-value=3.9e-58 Score=480.39 Aligned_cols=284 Identities=33% Similarity=0.486 Sum_probs=253.0
Q ss_pred ceeecCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhh
Q psy23 66 CRSMPLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMA 145 (386)
Q Consensus 66 ~~~~~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~ 145 (386)
...+.++++..|.||+||+...+|.++|+.+|+|+++.+|+|||+|++|||||||||||||.+.+.+.. .+.|+|||+
T Consensus 23 ~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~--~~~Gvipr~ 100 (913)
T KOG0244|consen 23 TPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQ--DTVGVIPRA 100 (913)
T ss_pred CCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeeccccccccc--ccCCcCcch
Confidence 344667889999999999999999999999999999999999999999999999999999998744322 237999999
Q ss_pred HHHHHHHhcCCCCCCceeeEEEEEEEEEcCeeeeccccc---ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhccc
Q psy23 146 AKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK---AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNS 222 (386)
Q Consensus 146 ~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~---~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~ 222 (386)
++.+|..+.... ...|.|.+||+|+|+|+|+|||.|. ..+.+++ +++++.+.|++++.|....++...|..|.-
T Consensus 101 v~~~f~~i~~~~--~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~ 177 (913)
T KOG0244|consen 101 VSTLFTRIGKTE--SFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSL 177 (913)
T ss_pred HHHHHHHHHhhh--ccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchH
Confidence 999999998865 3689999999999999999999853 3467777 888999999999999999999999999965
Q ss_pred ccc------------ceeEEEE-----------eEEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHH
Q psy23 223 ASI------------NNICFSF-----------LQVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIR 279 (386)
Q Consensus 223 ~r~------------~h~i~~l-----------~~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~ 279 (386)
.|+ +|+||++ ...+++|+|||||||||.+++.. .+.+++||++||.+|++||+||.
T Consensus 178 ~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a-~gdrlKEgInIN~gLL~LgnVIs 256 (913)
T KOG0244|consen 178 ERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKA-EGDRLKEGININGGLLALGNVIS 256 (913)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccccccc-chhhhhhccCcchHHHHHHHHHH
Confidence 554 5999999 23458999999999999988864 46788999999999999999999
Q ss_pred HHhcCCC--cccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhhhh
Q psy23 280 ALGRKGA--HLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQR 356 (386)
Q Consensus 280 aL~~~~~--~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~~~ 356 (386)
||.+... |+|||+|+|||||||+ ||||+.|+||+||||+..+.+||++||+||.||++|+|+|++|..+....+..
T Consensus 257 aLg~~kk~~~vpyRdSkltrlLQds-lgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~ 334 (913)
T KOG0244|consen 257 ALGEAKKGGEVPYRDSKLTRLLQDS-LGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLK 334 (913)
T ss_pred HHHhhhcCCcccchHHHHHHHHHHH-hcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHH
Confidence 9988655 9999999999999999 59999999999999999999999999999999999999999999665555443
No 27
>KOG0247|consensus
Probab=100.00 E-value=3.4e-56 Score=454.26 Aligned_cols=278 Identities=31% Similarity=0.472 Sum_probs=248.8
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.|-+||++.++|.+||+.++.|+|.+.+.|.|.-+|+||-|||||||||+|++ .++||+||+++.||..+
T Consensus 80 e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~------~~~GIlPR~Ld~iF~si 153 (809)
T KOG0247|consen 80 EKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTP------DRPGILPRALDVIFNSI 153 (809)
T ss_pred eeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCC------CCCCchHHHHHHHHHHh
Confidence 368999999999999999999999999999999999999999999999999999984 37899999999999988
Q ss_pred cCCCC---------------------------------------------------------------CCceeeEEEEEE
Q psy23 154 KSPKY---------------------------------------------------------------RGLNLHVSASFF 170 (386)
Q Consensus 154 ~~~~~---------------------------------------------------------------~~~~~~v~vS~~ 170 (386)
+.... .+..|.|+|||+
T Consensus 154 q~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~ 233 (809)
T KOG0247|consen 154 QGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFV 233 (809)
T ss_pred hceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHH
Confidence 55111 245689999999
Q ss_pred EEEcCeeeecccccc------c-ceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------------ceeEEE
Q psy23 171 EIYSGKVFDLLAEKA------K-LRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------------NNICFS 231 (386)
Q Consensus 171 EIyne~v~DLL~~~~------~-l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------------~h~i~~ 231 (386)
|||||-|||||.+.+ . ..+++|.++..+|+|+++|+|.+.+|+++++..|.++|+ +|.||+
T Consensus 234 EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFt 313 (809)
T KOG0247|consen 234 EIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFT 313 (809)
T ss_pred HHHHHHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEE
Confidence 999999999998642 2 567899999999999999999999999999999977665 599999
Q ss_pred E------------eEEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcC-----CCcccCCCCc
Q psy23 232 F------------LQVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK-----GAHLPFRASK 294 (386)
Q Consensus 232 l------------~~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~-----~~~vPyRdSk 294 (386)
| ....|.|.|||||||||..++.+ .+.+++|+.+||.||..|++||.+|.++ +.+|||||||
T Consensus 314 Ikl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~-sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSK 392 (809)
T KOG0247|consen 314 IKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQN-SGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSK 392 (809)
T ss_pred EEeeecccccccCceeEEeeeeeecccchhcccccc-hhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHH
Confidence 9 23568999999999999877754 4678889999999999999999999863 4789999999
Q ss_pred cccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhhhhccc
Q psy23 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQRQSK 359 (386)
Q Consensus 295 LT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~~~~~~ 359 (386)
||++++.+| -|+.+.+||+||+|...+|+|+++.|+||+-+++|.+.++++..++....+....
T Consensus 393 LThlfq~~f-~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~~~~~~p~~~~ 456 (809)
T KOG0247|consen 393 LTHLFKNYF-DGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQPSGLTPGREF 456 (809)
T ss_pred HHHHHHHhc-CCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccCCcccCccccc
Confidence 999999995 8889999999999999999999999999999999999999988888877764433
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-55 Score=456.81 Aligned_cols=265 Identities=39% Similarity=0.569 Sum_probs=245.7
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
...|.||+||++.++|++||+..+.|+++.++.|||+||||||||||||||||.|.. .++||||+++.+||+.+
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~------~~~Gii~~~l~~lf~~l 128 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE------EEPGIIPLSLKELFSKL 128 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCc------cccchHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999999974 47999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeeccccccc-ceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK-LRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~-l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------- 225 (386)
..... +..+.|.+||+|||||+++|||.+... +.++++...++.+.++++..+.+.+|++.+|+.|..+|.
T Consensus 129 ~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n 207 (568)
T COG5059 129 EDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEIN 207 (568)
T ss_pred Hhccc-CcceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhc
Confidence 87663 678999999999999999999998765 789999999999999999999999999999999987665
Q ss_pred -----ceeEEEEeE----------EeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhc--CCCcc
Q psy23 226 -----NNICFSFLQ----------VHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR--KGAHL 288 (386)
Q Consensus 226 -----~h~i~~l~~----------~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~--~~~~v 288 (386)
.|.+|++.. ..++|.+|||||+|+...+ .....+++|+..||+||.+|++||++|.. +..|+
T Consensus 208 ~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~-~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~i 286 (568)
T COG5059 208 DESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAART-GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHI 286 (568)
T ss_pred cccccceEEEEEEEEEeccCccceecceEEEEeeccccccchh-hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCcc
Confidence 599999922 2358999999999998887 34456778999999999999999999997 78999
Q ss_pred cCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q psy23 289 PFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEG 347 (386)
Q Consensus 289 PyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~ 347 (386)
|||+|||||+|+++ |||+|+|.|||||+|...++++|.+||+||.||+.|++.+..+.
T Consensus 287 pyReskLTRlLq~s-LgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 287 PYRESKLTRLLQDS-LGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred chhhhHHHHHHHHh-cCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 99999999999999 69999999999999999999999999999999999999999996
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.8e-41 Score=308.16 Aligned_cols=154 Identities=43% Similarity=0.622 Sum_probs=136.7
Q ss_pred HHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcCCCCCCceeeEEEEEEE
Q psy23 92 DFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYRGLNLHVSASFFE 171 (386)
Q Consensus 92 vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~~~~~~~~~v~vS~~E 171 (386)
||+.++ |+|+.+++|+|+|||+||||||||||||+|+. .++||+||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~------~~~Giip~~~~~----------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR------EGAGIIPRTVTD----------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC------CCCCcchHHHHH-----------------------
Confidence 899999 99999999999999999999999999999973 478999999987
Q ss_pred EEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------------ceeEEEEe------
Q psy23 172 IYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------------NNICFSFL------ 233 (386)
Q Consensus 172 Iyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------------~h~i~~l~------ 233 (386)
+.++++.|.++|. +|++|++.
T Consensus 58 -----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~ 96 (186)
T cd01363 58 -----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNA 96 (186)
T ss_pred -----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeec
Confidence 5555666655442 59999881
Q ss_pred -------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCccccccccccCCC
Q psy23 234 -------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGD 306 (386)
Q Consensus 234 -------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSkLT~lL~d~llgg 306 (386)
...++|+||||||+|+..+.+.. +...+|++.||+||.+|++||.+|++++.|+|||+||||+||||+ |||
T Consensus 97 ~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~-~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~-L~g 174 (186)
T cd01363 97 LASATEQPKVGKINLVDLAGSERIDFSGAE-GSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDS-LGG 174 (186)
T ss_pred CCCCccceeeeeEEEEEccccccccccCCc-hhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHh-cCC
Confidence 34589999999999998777544 566789999999999999999999999999999999999999999 599
Q ss_pred CCeEEEEEEeCC
Q psy23 307 KSRTCMIAMISP 318 (386)
Q Consensus 307 ns~t~~I~~vsp 318 (386)
||+|+||+||||
T Consensus 175 ~~~t~~i~~vsP 186 (186)
T cd01363 175 NSRTLMVACISP 186 (186)
T ss_pred CCeEEEEEEeCc
Confidence 999999999998
No 30
>PRK06893 DNA replication initiation factor; Validated
Probab=94.19 E-value=0.044 Score=51.34 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=35.4
Q ss_pred cCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 70 PLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 70 ~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+++-...+.||.++..+. ..- +.-+.+.+-.+++..++-||++|+||||-+..
T Consensus 6 ~~~~~~~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 6 PIHQIDDETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCCCCCcccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 445556789999886542 221 22223334456777889999999999998754
No 31
>PRK06620 hypothetical protein; Validated
Probab=93.62 E-value=0.035 Score=51.60 Aligned_cols=55 Identities=13% Similarity=0.013 Sum_probs=36.4
Q ss_pred ecCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcC---ceeeeeccCCCCCceeec
Q psy23 69 MPLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGM---ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 69 ~~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n---~ti~aYGqtgSGKT~Tm~ 127 (386)
.++..+..|+||..+..+ +++..|..... +.+. -|+| -.++-||++||||||.+.
T Consensus 5 l~~~~~~~~tfd~Fvvg~-~N~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 5 FRFTTSSKYHPDEFIVSS-SNDQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred cCCCCCCCCCchhhEecc-cHHHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 345566788999877644 44556665432 2221 1444 358999999999999985
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.40 E-value=0.031 Score=52.09 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=29.1
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..|+||..+.. ..++..|... ..+.+.--..+| .++-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 46889987753 4455656432 333333111233 478899999999997643
No 33
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.05 E-value=0.048 Score=53.06 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=28.5
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..|++..+.+--++-|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 6788899999999999999999999999983
No 34
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.02 E-value=0.2 Score=52.21 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=57.0
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc------CCCCCCcccccchhhhhHHH
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG------DFQGKTQDCKKGIYAMAAKD 148 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G------~~~~~~~~~~~Gli~r~~~~ 148 (386)
..|....-|.|.-+|.+- +..|++.+-.|...- .-.|.|||||||||-- -|. -.-.++.- .+.+
T Consensus 3 ~~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPt-LV~AhNKT----LAaQ 72 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPT-LVLAHNKT----LAAQ 72 (663)
T ss_pred CceEeccCCCCCCCcHHH----HHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCe-EEEecchh----HHHH
Confidence 345666667777777653 445666666665543 3579999999999943 110 00011222 4556
Q ss_pred HHHHhcCCCCCCceeeEEEEEEEEEcCeee
Q psy23 149 VFKLLKSPKYRGLNLHVSASFFEIYSGKVF 178 (386)
Q Consensus 149 LF~~~~~~~~~~~~~~v~vS~~EIyne~v~ 178 (386)
||+.+++-= .+..+...|||+..|+-+-|
T Consensus 73 Ly~Efk~fF-P~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 73 LYSEFKEFF-PENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHHHHhC-cCcceEEEeeeccccCcccc
Confidence 776665532 34567789999999987643
No 35
>PRK09087 hypothetical protein; Validated
Probab=92.11 E-value=0.12 Score=48.54 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=36.4
Q ss_pred eecCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 68 SMPLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 68 ~~~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..++..+..|+||..+..+.. ..+|.. ++....-.+-.++-||++||||||-+.
T Consensus 9 ~l~~~~~~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 9 PLNFSHDPAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred eeCCCCCCCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 456667778999998864433 446663 333222234458999999999999874
No 36
>PRK05642 DNA replication initiation factor; Validated
Probab=91.77 E-value=0.14 Score=48.24 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=32.2
Q ss_pred ecCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcC---c-CceeeeeccCCCCCceeec
Q psy23 69 MPLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEG---G-MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 69 ~~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G---~-n~ti~aYGqtgSGKT~Tm~ 127 (386)
.+++-+..|+||..+... +.. +...++...++ . ...++-||++|+||||-+.
T Consensus 8 l~~~~~~~~tfdnF~~~~--~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 8 LGVRLRDDATFANYYPGA--NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred cCCCCCCcccccccCcCC--hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 344555678999888442 222 33333333332 2 2457899999999999864
No 37
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.69 E-value=0.21 Score=46.98 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=34.5
Q ss_pred cCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 70 PLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 70 ~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
++.-...+.||..+.. .+...+...-+ +.. ......++-||++|+||||.+..
T Consensus 12 ~~~~~~~~~fd~f~~~--~n~~a~~~l~~-~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 12 PLYLPDDETFASFYPG--DNDSLLAALQN-ALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCCCCCcCCccccccC--ccHHHHHHHHH-HHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 3446667889887765 55556644322 221 22234789999999999998753
No 38
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.27 E-value=0.12 Score=53.63 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=26.8
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
...+..+++.-.+-|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456678888899999999999999999986
No 39
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=89.21 E-value=0.0022 Score=68.08 Aligned_cols=193 Identities=21% Similarity=0.202 Sum_probs=111.7
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhc
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLK 154 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~ 154 (386)
..|.||.+|.....+..++... ...++..++| +++|++++++++++|--. ..++..-.+...|....
T Consensus 353 ~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 419 (568)
T COG5059 353 EEIKFDLSEDRSEIEILVFREQ-SQLSQSSLSG----IFAYMQSLKKETETLKSR--------IDLIMKSIISGTFERKK 419 (568)
T ss_pred HHHHhhhhhhhhhhhhHHHHHH-Hhhhhhhhhh----HHHHHhhhhhhhhcccch--------hhhhhhhhhhhhhhhhh
Confidence 4688999999888888888764 4466777777 899999999999999532 34555566688888887
Q ss_pred CCCCCCceeeEEEEEEEEEcCeeeeccccccc---ceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcc----------
Q psy23 155 SPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK---LRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGN---------- 221 (386)
Q Consensus 155 ~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~---l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~---------- 221 (386)
......+.+...+-+.++|-....++.....+ -.......-......+.........+.......+.
T Consensus 420 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 499 (568)
T COG5059 420 LLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLN 499 (568)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhccchhhcccchh
Confidence 77767777777777777772222222221110 00000000000000000000001111111111110
Q ss_pred c-cccceeEEEEeE-----Eeee--EEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHh
Q psy23 222 S-ASINNICFSFLQ-----VHGK--FSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG 282 (386)
Q Consensus 222 ~-~r~~h~i~~l~~-----~~s~--L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~ 282 (386)
. ....|..|.... .... +..+||||+|+. .. ...+.++.+...+|++|..+++++.++.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~e~~-~s-~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 500 LRSSRSHSKFRDHLNGSNSSTKELSLNQVDLAGSERK-VS-QSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhcccchhhhhcccchhhhhHHHHhhhhhccccccc-hh-hhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 0 001355554411 1111 689999999997 44 3455677899999999999999998764
No 40
>PRK12377 putative replication protein; Provisional
Probab=88.90 E-value=0.33 Score=46.25 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=34.7
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+||........+..++.. +..+++.+..+. ..++-||++|+||||.+..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 4677655555566666654 455666666553 5688999999999998754
No 41
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.90 E-value=0.36 Score=51.63 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=34.1
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+..|.||.++-.. .+...|.. +..+.+..-.++|. ||-||.+|+||||-+..
T Consensus 282 ~~~~TFDnFvvG~-sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGA-SNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCC-ccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 3568899876544 34445533 33344443345665 89999999999998753
No 42
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.38 E-value=0.26 Score=50.85 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=34.2
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcC-cCceeeeeccCCCCCceeecc
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEG-GMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G-~n~ti~aYGqtgSGKT~Tm~G 128 (386)
-+..|+||..+.. .++...|.... .+.+. .| +|. ++-||++|+||||-+..
T Consensus 98 l~~~~tFdnFv~g-~~n~~a~~~~~-~~~~~--~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 98 LNPDYTFENFVVG-PGNSFAYHAAL-EVAKN--PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCCcccccccC-CchHHHHHHHH-HHHhC--cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 3567899988753 45666665432 23332 23 564 99999999999998753
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.37 E-value=0.43 Score=43.85 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=31.5
Q ss_pred CCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 72 SGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 72 ~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+-...+.||..... .+...++..- .+ +.......++-||++|+||||.+
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~l~-~~---~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 7 GLPDDPTFDNFYAG--GNAELLAALR-QL---AAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCCchhhcCcCcC--CcHHHHHHHH-HH---HhcCCCCeEEEECCCCCCHHHHH
Confidence 34456778877732 3444444332 12 22556778999999999999976
No 44
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.22 E-value=0.4 Score=44.39 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=33.2
Q ss_pred ecCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 69 MPLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 69 ~~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
+++.....+.||.++... ++++.. .++.+... ......++-||++|+||||.+.
T Consensus 7 ~~~~~~~~~~~d~f~~~~--~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 7 LDLGPPPPPTFDNFVAGE--NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred cCCCCCChhhhcccccCC--cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 345556678899888322 233332 23333331 2344578999999999999763
No 45
>PRK08727 hypothetical protein; Validated
Probab=87.81 E-value=0.4 Score=44.96 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=30.0
Q ss_pred cCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcC-ceeeeeccCCCCCceeecc
Q psy23 70 PLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGM-ATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 70 ~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n-~ti~aYGqtgSGKT~Tm~G 128 (386)
+++-...++||..+..+. + ..... ..+..|.. -.++-||++|+||||-+..
T Consensus 9 ~~~~~~~~~f~~f~~~~~-n--~~~~~-----~~~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 9 ALRYPSDQRFDSYIAAPD-G--LLAQL-----QALAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCCCCCcCChhhccCCcH-H--HHHHH-----HHHHhccCCCeEEEECCCCCCHHHHHHH
Confidence 344455678888774333 2 12211 12222332 3589999999999998743
No 46
>PRK08116 hypothetical protein; Validated
Probab=87.72 E-value=0.37 Score=46.30 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=33.9
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcC--cCceeeeeccCCCCCceeec
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEG--GMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G--~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..++||... .+..+...|.. ++..++.+.+. .+..++-||++|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 346777655 35555555543 55566666543 34568999999999999874
No 47
>PRK06526 transposase; Provisional
Probab=87.65 E-value=0.25 Score=47.24 Aligned_cols=45 Identities=18% Similarity=0.046 Sum_probs=27.4
Q ss_pred eeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 79 CWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 79 fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
||.-+.+..++..+..-...+.++ .+. .++.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~--nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKE--NVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCc--eEEEEeCCCCchHHHHHH
Confidence 343344455555544433333333 333 379999999999999864
No 48
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=87.62 E-value=0.29 Score=42.74 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=21.8
Q ss_pred hHHHHHHhcC-cCceeeeeccCCCCCceeecc
Q psy23 98 KPLVKTIFEG-GMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 98 ~plv~~~l~G-~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..+++.+-.+ ....++..++||||||++|..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344444444 466677889999999999975
No 49
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.45 E-value=0.36 Score=39.81 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+...+.......++.+|++|+|||+.+
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3443443434456889999999999764
No 50
>PF13245 AAA_19: Part of AAA domain
Probab=87.30 E-value=0.27 Score=37.95 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=18.7
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
|...+. -+..++..|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 444555 344455699999999999743
No 51
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.19 E-value=0.33 Score=49.28 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=31.1
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
+..|+||...- +..+...|.. +..+.+.--..+| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 46788998653 3455555543 2333332111233 47889999999999874
No 52
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.45 E-value=0.62 Score=46.22 Aligned_cols=26 Identities=35% Similarity=0.682 Sum_probs=19.6
Q ss_pred HHHHhc-CcCceeeeeccCCCCCceee
Q psy23 101 VKTIFE-GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 101 v~~~l~-G~n~ti~aYGqtgSGKT~Tm 126 (386)
+...+. +....++.||++|+|||+++
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 334444 45567999999999999986
No 53
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.15 E-value=0.47 Score=48.96 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
-+..|.||.... +..+...|... ..+.+.--..+| .++-||++|+||||.+.
T Consensus 115 l~~~~tfd~fv~-g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 115 LNPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCCccccccc-CCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 446788888654 33555555442 333332112334 48889999999999874
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.66 E-value=0.66 Score=46.74 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=19.4
Q ss_pred HHHHhcCcCce-eeeeccCCCCCceee
Q psy23 101 VKTIFEGGMAT-CFAYGQTGSGKTHTM 126 (386)
Q Consensus 101 v~~~l~G~n~t-i~aYGqtgSGKT~Tm 126 (386)
+..++.|.-.. ++.||.+|||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 44555544444 999999999999886
No 55
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.62 E-value=0.8 Score=43.49 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=32.3
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
...||........|..++.. +...++.+-.+. ..++-+|.+|+||||.+..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 45676654444455556554 333445544443 3688999999999998754
No 56
>PRK08181 transposase; Validated
Probab=84.15 E-value=0.86 Score=43.95 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=17.2
Q ss_pred cCcCceeeeeccCCCCCceeecc
Q psy23 106 EGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+|.| ++-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4444 89999999999998754
No 57
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.10 E-value=0.52 Score=48.79 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=31.0
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.|+||..+..+ +++..|.. +..+.+.--..|| .++-||++|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 48999877544 45556643 3333322111234 48899999999999874
No 58
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.04 E-value=0.56 Score=47.76 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhc---CcCceeeeeccCCCCCceeec
Q psy23 72 SGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFE---GGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 72 ~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~---G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.-+..|.||...... ++...|. +...+-+ +.---+|-||++|+||||-|-
T Consensus 79 ~l~~~ytFdnFv~g~-~N~~A~a-----a~~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 79 GLNPKYTFDNFVVGP-SNRLAYA-----AAKAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred cCCCCCchhheeeCC-chHHHHH-----HHHHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 345678999877644 3333333 2223332 223458999999999999984
No 59
>PRK10436 hypothetical protein; Provisional
Probab=83.99 E-value=0.47 Score=49.27 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=24.0
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+..++..-.+.|+..|+||||||.||.-
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45566677788999999999999999853
No 60
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.81 E-value=0.74 Score=45.67 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.0
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+...++.+-.+. ..++-||++|+||||.+.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 455777776554 6699999999999998754
No 61
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=82.77 E-value=0.59 Score=42.64 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=22.1
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..++.++...+..++..|..||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 35566676666667778999999999873
No 62
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.68 E-value=0.97 Score=45.35 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=18.8
Q ss_pred HHHhc-CcCceeeeeccCCCCCceee
Q psy23 102 KTIFE-GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 102 ~~~l~-G~n~ti~aYGqtgSGKT~Tm 126 (386)
...++ +....++-||++|+|||+++
T Consensus 47 ~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 47 RPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 34443 44466899999999999987
No 63
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.67 E-value=0.43 Score=38.91 Aligned_cols=17 Identities=35% Similarity=0.231 Sum_probs=14.9
Q ss_pred eeeeccCCCCCceeecc
Q psy23 112 CFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~G 128 (386)
++.+|++|+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999865
No 64
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.66 E-value=0.63 Score=48.65 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=23.9
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+..++..-.+.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45566777778899999999999999853
No 65
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.56 E-value=0.58 Score=49.85 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=24.4
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45677777789999999999999999854
No 66
>KOG0989|consensus
Probab=82.29 E-value=0.91 Score=44.45 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=28.3
Q ss_pred CCCChHHHHHhhhhHHHHHHhcCc-CceeeeeccCCCCCceeec
Q psy23 85 LKNTVPLDFRFSAKPLVKTIFEGG-MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 85 ~~~sq~~vf~~~~~plv~~~l~G~-n~ti~aYGqtgSGKT~Tm~ 127 (386)
|..--+.++++.+..++...+.+- ---.+-||+.|+|||.|..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 333344555555566666666553 3445789999999999974
No 67
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=81.58 E-value=0.69 Score=46.07 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=22.3
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
|.+..++.--.+.|+..|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 45555554445778999999999999984
No 68
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=81.32 E-value=0.76 Score=46.40 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=20.5
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++++.++. .++.++..|+||||||+||.
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 34444443 45678899999999999984
No 69
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.22 E-value=0.96 Score=44.42 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=31.6
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcC-cCceeeeeccCCCCCceeecc
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEG-GMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G-~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..|+.+-..+..+..++.. +...++....| ..-.++-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 3444433223355566654 35566655543 234689999999999998854
No 70
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=81.05 E-value=1.3 Score=42.11 Aligned_cols=118 Identities=13% Similarity=0.156 Sum_probs=68.5
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCce-eeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMAT-CFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFK 151 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~t-i~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~ 151 (386)
......+|...+.+...+.+.+.+ .++++|..+- ++.||..|+|||.++- .++.
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVk--------------------all~ 74 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVK--------------------ALLN 74 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHH--------------------HHHH
Confidence 333445556666555555555544 6788888754 6789999999987652 2333
Q ss_pred HhcCCCCCCceeeEEEEEEEEEcCeeeeccc------ccccceEEEcCCCceEEeccEEEEe-CCHHHHHHHHHhccccc
Q psy23 152 LLKSPKYRGLNLHVSASFFEIYSGKVFDLLA------EKAKLRVLEDGKQQVQIVGLTEQVV-DSVEEVLKLIQHGNSAS 224 (386)
Q Consensus 152 ~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~------~~~~l~i~ed~~~~~~v~~l~~~~V-~s~~e~~~ll~~g~~~r 224 (386)
..... + +-.+||..+.+.||-. ..+... -+++.+|+--.- .++..+..+|+-|...+
T Consensus 75 ~y~~~---G------LRlIev~k~~L~~l~~l~~~l~~~~~kF-------Ilf~DDLsFe~~d~~yk~LKs~LeGgle~~ 138 (249)
T PF05673_consen 75 EYADQ---G------LRLIEVSKEDLGDLPELLDLLRDRPYKF-------ILFCDDLSFEEGDTEYKALKSVLEGGLEAR 138 (249)
T ss_pred HHhhc---C------ceEEEECHHHhccHHHHHHHHhcCCCCE-------EEEecCCCCCCCcHHHHHHHHHhcCccccC
Confidence 33321 1 5578998887776642 222111 123334442221 34677788888887766
Q ss_pred cceeEEE
Q psy23 225 INNICFS 231 (386)
Q Consensus 225 ~~h~i~~ 231 (386)
-.++++-
T Consensus 139 P~Nvliy 145 (249)
T PF05673_consen 139 PDNVLIY 145 (249)
T ss_pred CCcEEEE
Confidence 6555554
No 71
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.68 E-value=0.44 Score=39.59 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=12.8
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 356889999999999876
No 72
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.50 E-value=1 Score=43.33 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=37.3
Q ss_pred CCceeeeeEEcCCCCChHHH----------HHhh-hhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 73 GNKLSRCWKVLSLKNTVPLD----------FRFS-AKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~v----------f~~~-~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
+...||....|..+.. .-| |++. ..|+++++.--.-+-|+..|+|||||+.||-
T Consensus 81 ~~gRfRvnAf~qr~~~-g~VlRrI~~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 81 DIGRFRVNAFYQRGLA-GLVLRRIETKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CCceEEeehhhhcCcc-hhhhhhhhccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4456777766654321 222 3332 5677788887888889999999999999983
No 73
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.45 E-value=0.91 Score=43.53 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=22.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.+..++..-.+.|+..|+||||||.+|.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 4455666556778999999999999984
No 74
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.44 E-value=0.56 Score=38.14 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.3
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 457889999999999874
No 75
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=80.41 E-value=0.56 Score=42.79 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=15.7
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
+.|+..|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 567889999999999974
No 76
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=80.41 E-value=0.81 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.9
Q ss_pred HHhcCcCceeeeeccCCCCCceeec
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..+.--.+.|+..|+||||||.||.
T Consensus 128 ~~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 128 DAIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHHhccCCEEEEECCCCCCHHHHHH
Confidence 3444456889999999999999984
No 77
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=80.23 E-value=0.66 Score=44.19 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=21.8
Q ss_pred hHHHHHHhcCc---CceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
.+.+..++... .+.|+..|.||||||.+|
T Consensus 113 ~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 113 PEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 34445555544 677888999999999987
No 78
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=80.17 E-value=0.56 Score=43.43 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=13.6
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
-+..+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457899999999997
No 79
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=80.09 E-value=0.79 Score=39.64 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=20.9
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+++.+.+|.+ ++..|+||+|||.....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 4555666666 78899999999998754
No 80
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=79.83 E-value=1.1 Score=42.33 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=18.5
Q ss_pred HHHhcCcCceeeeeccCCCCCceee
Q psy23 102 KTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 102 ~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..++.....++.+|++|+|||+.+
T Consensus 36 ~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 36 EYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3334444567888999999999875
No 81
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.60 E-value=1.2 Score=46.02 Aligned_cols=52 Identities=27% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHH--hcC--cCceeeeeccCCCCCceeec
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTI--FEG--GMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~--l~G--~n~ti~aYGqtgSGKT~Tm~ 127 (386)
-+..|+||..+.. .+++..|.. +..+.+.. ..| || -++-||++|+||||.+.
T Consensus 104 l~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 104 LDPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CCccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 3567999988764 355555543 33343322 123 34 37789999999999874
No 82
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=79.18 E-value=1 Score=40.47 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=15.9
Q ss_pred CceeeeeccCCCCCceeecc
Q psy23 109 MATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~G 128 (386)
.-.++-+|++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 34589999999999998754
No 83
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=77.52 E-value=0.93 Score=41.12 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=20.8
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+.|.+.+-.|.+..++.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444444566888999999999999976
No 84
>PF12846 AAA_10: AAA-like domain
Probab=77.26 E-value=0.78 Score=43.53 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.0
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
|.-++..|.||||||+++.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4557889999999999884
No 85
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=76.82 E-value=2.1 Score=40.90 Aligned_cols=51 Identities=18% Similarity=0.037 Sum_probs=31.8
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+.|.+..+-.....+...|... ..+++.+-+ ...++-||++|+||||-..+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~--~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFER--GENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhcc--CCcEEEECCCCCcHHHHHHH
Confidence 4555555444455566666554 334444443 34467799999999998754
No 86
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=76.67 E-value=1.5 Score=44.01 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=27.9
Q ss_pred CCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 86 KNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 86 ~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..|.++|+.+..-+. ......+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 4568899988765443 344456788999999999987
No 87
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=76.21 E-value=0.75 Score=37.93 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=13.0
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999864
No 88
>PRK06921 hypothetical protein; Provisional
Probab=75.99 E-value=2.2 Score=40.91 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=22.1
Q ss_pred hhHHHHHHhc---CcCceeeeeccCCCCCceeecc
Q psy23 97 AKPLVKTIFE---GGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 97 ~~plv~~~l~---G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+...++.+-+ +....++-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3445555432 2345689999999999998754
No 89
>PRK09183 transposase/IS protein; Provisional
Probab=75.97 E-value=1.6 Score=41.72 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=25.4
Q ss_pred eeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 79 CWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 79 fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
||.-|.+..+...+..-..-.. +-.|. .++-+|++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~--~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNE--NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCC--eEEEEeCCCCCHHHHHHH
Confidence 4444555555544433211111 22344 466799999999998743
No 90
>PHA00729 NTP-binding motif containing protein
Probab=75.38 E-value=1.9 Score=40.54 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=23.3
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++.+++.+..|--..|+.+|.+|+||||-..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 4456666665555689999999999999754
No 91
>PF13479 AAA_24: AAA domain
Probab=75.08 E-value=1.1 Score=41.43 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=16.4
Q ss_pred CceeeeeccCCCCCceeecc
Q psy23 109 MATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~G 128 (386)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 34678999999999998754
No 92
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=74.33 E-value=2 Score=41.95 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.8
Q ss_pred cCcCceeeeeccCCCCCceeec
Q psy23 106 EGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.|-...++-||++|+|||+++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3433357889999999999873
No 93
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=74.01 E-value=1.4 Score=39.87 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=17.2
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.|..++.--. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 3444443333 456689999999998753
No 94
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=73.99 E-value=1.4 Score=43.09 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..++..++++ ...|+..|+||||||.+|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3456666664 4578899999999999873
No 95
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.94 E-value=0.97 Score=41.39 Aligned_cols=17 Identities=41% Similarity=0.517 Sum_probs=14.4
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999974
No 96
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=73.63 E-value=1.7 Score=43.00 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++..++.+ ...++..|.||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 456666665 356677799999999766
No 97
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=72.95 E-value=1.3 Score=42.23 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=18.7
Q ss_pred HHhcCcCceeeeeccCCCCCceeecc
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.++.-.+..++..|..|||||+||..
T Consensus 7 ~~i~~~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 7 RIIRSTEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp HHHHS-SSEEEEEE-TTSSHHHHHHH
T ss_pred HHHhCCCCCEEEEeCCCCCchHHHHH
Confidence 33444678888999999999999854
No 98
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=72.33 E-value=2.5 Score=39.06 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeec
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++.++ -+-.+++.|+.||||||.-.
T Consensus 13 ~~al~--~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 13 LDALL--NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp HHHHH--H-SEEEEE--TTSSTTHHHH
T ss_pred HHHHH--hCCeEEEECCCCCcHHHHHH
Confidence 34444 55678999999999998753
No 99
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=72.12 E-value=3.3 Score=35.34 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=25.0
Q ss_pred hhHHHHHHhcCc---Cceeeee-ccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 97 AKPLVKTIFEGG---MATCFAY-GQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 97 ~~plv~~~l~G~---n~ti~aY-GqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
+...|.+.+... ...|+++ |.||+||||+- ..+++.||..
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~----------------~liA~~ly~~ 80 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS----------------RLIAEHLYKS 80 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH----------------HHHHHHHHhc
Confidence 334444555432 2346655 99999999973 3467777763
No 100
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=71.65 E-value=2.1 Score=38.45 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=20.3
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+++...++. ...++-.|++|||||.+|
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 4455555554 345778899999999876
No 101
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=71.41 E-value=2.9 Score=46.78 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=19.4
Q ss_pred HHHHHhc--CcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFE--GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~--G~n~ti~aYGqtgSGKT~Tm 126 (386)
++..++. |-+.+++.||++|+|||.|+
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3344443 44456789999999999987
No 102
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=71.11 E-value=1.5 Score=35.87 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.6
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999864
No 103
>PHA02244 ATPase-like protein
Probab=70.23 E-value=1.2 Score=45.01 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=19.7
Q ss_pred HHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 93 f~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+......+...+-.|.+ |+-+|++|+|||+..
T Consensus 105 ~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 105 FHYETADIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 33333344433445554 566999999999865
No 104
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=69.79 E-value=2.7 Score=36.39 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=19.2
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+++.++++. ..++..|++|||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344444442 4567789999999998754
No 105
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=69.64 E-value=1.6 Score=36.75 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 106
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=69.61 E-value=2.2 Score=42.25 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=20.3
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.++..++.+. ..|+..|.||||||.+|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4455555543 457899999999999873
No 107
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=69.50 E-value=2.8 Score=40.69 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=16.3
Q ss_pred cCc-CceeeeeccCCCCCceeec
Q psy23 106 EGG-MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 106 ~G~-n~ti~aYGqtgSGKT~Tm~ 127 (386)
.|- ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3456669999999999863
No 108
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=69.37 E-value=2.2 Score=42.40 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..++..+..+. +.|+..|.||||||.++-
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 44455555555 778999999999999873
No 109
>KOG2543|consensus
Probab=69.24 E-value=2.7 Score=42.41 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=14.5
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
-..|+-||.+||||||++
T Consensus 30 PS~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLV 47 (438)
T ss_pred ceeEEEeccCCCchhHHH
Confidence 334688999999999964
No 110
>PRK06547 hypothetical protein; Provisional
Probab=68.92 E-value=3.4 Score=36.98 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=19.2
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+.++..+..+.---|..+|.+|||||+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33445555444445566699999999864
No 111
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=68.85 E-value=1 Score=39.50 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=12.5
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|-...++.+|.+|+|||+.+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp S-----EEE-B-TTSSHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH
Confidence 555677899999999999976
No 112
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=68.62 E-value=2 Score=43.52 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=30.1
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHH-HHhcC----cCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVK-TIFEG----GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G----~n~ti~aYGqtgSGKT~Tm 126 (386)
.+.||.+-+.+..-+++.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 345555555555455555555444443 22221 2345889999999999864
No 113
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=68.18 E-value=1.5 Score=35.74 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=13.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 568999999999976
No 114
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=67.97 E-value=2.7 Score=44.33 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=24.2
Q ss_pred hhhHHHHHHhcCcC--ceeeeeccCCCCCceee
Q psy23 96 SAKPLVKTIFEGGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 96 ~~~plv~~~l~G~n--~ti~aYGqtgSGKT~Tm 126 (386)
-++.+++..+.|.. ..++.+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 36677777776654 45788999999999998
No 115
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.90 E-value=4.2 Score=41.36 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=16.1
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567889999999999973
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=67.50 E-value=6 Score=43.03 Aligned_cols=88 Identities=19% Similarity=0.230 Sum_probs=51.2
Q ss_pred EEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhh----hhHHHHHHHhcCC
Q psy23 81 KVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYA----MAAKDVFKLLKSP 156 (386)
Q Consensus 81 ~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~----r~~~~LF~~~~~~ 156 (386)
.=|.|.-.|...++. +++.+-+|.... ..+|.||||||+||-.-... ...+-||- ..+.+|++.+..-
T Consensus 6 ~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~---~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 6 SPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQ---VNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred cCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHHh
Confidence 346677777777765 455555664333 37899999999998652110 00111111 1344555555432
Q ss_pred CCCCceeeEEEEEEEEEcCee
Q psy23 157 KYRGLNLHVSASFFEIYSGKV 177 (386)
Q Consensus 157 ~~~~~~~~v~vS~~EIyne~v 177 (386)
- .+..+...|||+..|.-+.
T Consensus 78 ~-p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 78 F-PENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred C-CCCeEEEEeeecccCCccc
Confidence 2 1234778899999998764
No 117
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=67.00 E-value=1.7 Score=43.56 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=29.5
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHH-Hhc--Cc--CceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKT-IFE--GG--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~-~l~--G~--n~ti~aYGqtgSGKT~Tm 126 (386)
.+.|+.+.+.+.--+++.+.+..|+... .+. |. ...++-||++|+|||+..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3455555555544455555444444321 121 21 345889999999999875
No 118
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=66.85 E-value=1.6 Score=39.69 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
-++.+|++|||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 68899999999999874
No 119
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=66.58 E-value=3.3 Score=41.18 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=20.3
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..++..++.+ ...|+..|+||||||.+|-
T Consensus 150 ~~~L~~~v~~-~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVIS-KKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHc-CCcEEEECCCCCCHHHHHH
Confidence 3445555544 3457889999999999873
No 120
>KOG0926|consensus
Probab=64.63 E-value=4.2 Score=44.68 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.7
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
|-.++.+|+||||||.-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 566888999999999877
No 121
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=64.47 E-value=2.3 Score=41.10 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=14.5
Q ss_pred eeeeeccCCCCCceeecc
Q psy23 111 TCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~G 128 (386)
.|.-.|++|+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 456669999999999743
No 122
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=64.22 E-value=5 Score=40.67 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=35.2
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhc----CcCceeeeeccCCCCCcee
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFE----GGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~----G~n~ti~aYGqtgSGKT~T 125 (386)
+.+.|+.+.+.=---..+.+.++..+.++++. -.---+.-||+.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 34667776655555566666777777777774 2334467899999999987
No 123
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=64.14 E-value=2.3 Score=42.50 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.++..+.. ....|+..|+||||||++|-
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 34444443 24557889999999999884
No 124
>KOG0953|consensus
Probab=63.86 E-value=7.1 Score=41.24 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=31.8
Q ss_pred eeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcC
Q psy23 112 CFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~ 155 (386)
|+..|+|.|||||--.-.+......--.|=+-..+.++|++++.
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 88999999999998755433222333446667788899998865
No 125
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=63.72 E-value=2 Score=36.25 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=13.1
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999864
No 126
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=63.61 E-value=4.1 Score=36.49 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=18.5
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.++.+++|.| ++..++||+|||.+
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHH
Confidence 4455566776 57889999999987
No 127
>PRK13764 ATPase; Provisional
Probab=63.24 E-value=3.3 Score=44.43 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.1
Q ss_pred CcCceeeeeccCCCCCceeec
Q psy23 107 GGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.....|+..|+||||||+++.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 334558999999999999984
No 128
>PLN03025 replication factor C subunit; Provisional
Probab=62.87 E-value=4.8 Score=39.43 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=16.6
Q ss_pred CcCceeeeeccCCCCCceeecc
Q psy23 107 GGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
|.-..++-||+.|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 3334467799999999998754
No 129
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=62.51 E-value=2.8 Score=40.42 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=27.4
Q ss_pred CceeeeeccCCCCCceeeccCCC-CC----------CcccccchhhhhHHHHHHHhcC
Q psy23 109 MATCFAYGQTGSGKTHTMGGDFQ-GK----------TQDCKKGIYAMAAKDVFKLLKS 155 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~G~~~-~~----------~~~~~~Gli~r~~~~LF~~~~~ 155 (386)
--.|+-||++|+|||++--.-.. .. .-...-|=-.|-+++||.+..+
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~ 208 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARK 208 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34689999999999987422100 00 0011234445677788877655
No 130
>PTZ00424 helicase 45; Provisional
Probab=62.05 E-value=4 Score=40.92 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=20.8
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+..+++|.|. +..++||||||.+.
T Consensus 56 ~~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 56 QRGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 3456677889885 56789999999764
No 131
>PTZ00014 myosin-A; Provisional
Probab=62.03 E-value=11 Score=41.95 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.1
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+.|.||+.-|.+|||||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 689999999999999999664
No 132
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=62.00 E-value=2.6 Score=42.92 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=33.9
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHH-HHhc--C--cCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVK-TIFE--G--GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~--G--~n~ti~aYGqtgSGKT~Tm 126 (386)
...|+.|-+.+.--+++-+.+..|+.. ..++ | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 456677777666666666665555553 2333 2 3456889999999999875
No 133
>KOG0727|consensus
Probab=61.98 E-value=7 Score=37.56 Aligned_cols=125 Identities=20% Similarity=0.184 Sum_probs=65.6
Q ss_pred CccCCeEEeeeeeeccCCCCCCCCCCCC-ccccCceeecCC-----------CCce--eeeeEEcCCCCChHHHHHhhhh
Q psy23 33 GETKGKEVELDALFSLNSNLMPKTNNEN-SQYNNCRSMPLS-----------GNKL--SRCWKVLSLKNTVPLDFRFSAK 98 (386)
Q Consensus 33 ~~~~gk~~~~~~i~~~n~~l~p~~~~~~-~~~~~~~~~~~~-----------~~~~--f~fd~vf~~~~sq~~vf~~~~~ 98 (386)
|.|-|--|-+..+-.++.+|+-+...-. +...+|..-.++ .++. -.+-.|=+.+...+++-+.+--
T Consensus 94 gsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavel 173 (408)
T KOG0727|consen 94 GSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVEL 173 (408)
T ss_pred ecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhc
Confidence 4667788888888888888874433322 222233221111 1111 1112233334445556555555
Q ss_pred HHHHHHh---cCcC--ceeeeeccCCCCCceeeccC-------C---CCC-CcccccchhhhhHHHHHHHhcCCC
Q psy23 99 PLVKTIF---EGGM--ATCFAYGQTGSGKTHTMGGD-------F---QGK-TQDCKKGIYAMAAKDVFKLLKSPK 157 (386)
Q Consensus 99 plv~~~l---~G~n--~ti~aYGqtgSGKT~Tm~G~-------~---~~~-~~~~~~Gli~r~~~~LF~~~~~~~ 157 (386)
|+.+.-+ =|.+ -.|+.||+.|+|||--.-.- + .+. --...-|==||.++++|+...+..
T Consensus 174 plt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena 248 (408)
T KOG0727|consen 174 PLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 248 (408)
T ss_pred cchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence 5554443 1333 34899999999998432110 0 000 001122445899999999887644
No 134
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=61.97 E-value=2.8 Score=39.86 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45788999999999986
No 135
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=61.93 E-value=2.8 Score=34.24 Aligned_cols=15 Identities=40% Similarity=0.341 Sum_probs=12.9
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 567899999999875
No 136
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=61.77 E-value=2.7 Score=37.56 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.5
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999964
No 137
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=61.56 E-value=4 Score=37.01 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=19.1
Q ss_pred HHHhcCc---CceeeeeccCCCCCceee
Q psy23 102 KTIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 102 ~~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
|.++.|. ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556555 567789999999999864
No 138
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=61.42 E-value=5.9 Score=43.04 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=25.4
Q ss_pred HHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 90 PLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 90 ~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+|.-. ......++ .+.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA-~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 67 PHIFAIA-DAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred CcHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 4466532 22233333 588999999999999999987
No 139
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=60.72 E-value=3.2 Score=37.68 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=13.6
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...++..|+.|||||+.+
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 456788899999998875
No 140
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=60.72 E-value=7.9 Score=42.97 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=21.0
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..+..+.+|.|+-|+| +||||||-+-|
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHHH
Confidence 3556778999996655 89999998754
No 141
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.59 E-value=3.2 Score=41.98 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.8
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
...++-+|++|+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3567788999999999974
No 142
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=60.53 E-value=4.7 Score=44.02 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=26.9
Q ss_pred ChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 88 TVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 88 sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
....||.-.-+-.-.-.-.+.|.||+..|.+|||||.+.
T Consensus 64 ~~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 64 LPPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp S-SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccCccchhhhcccccccccccccceeeccccccccccch
Confidence 335566544333323334689999999999999999885
No 143
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=60.34 E-value=2.2 Score=41.39 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.7
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999854
No 144
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.16 E-value=5 Score=40.21 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=18.9
Q ss_pred HHHHHhcC-cCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEG-GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G-~n~ti~aYGqtgSGKT~Tm 126 (386)
+...+-.| ...+++-||+.|+|||++.
T Consensus 28 l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 28 ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 33333343 4456899999999999865
No 145
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=60.11 E-value=5.6 Score=38.33 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999876
No 146
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=59.44 E-value=6.4 Score=40.08 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=26.2
Q ss_pred EeccEEEEeCCHHHHHHHHHhccccccceeEEEEeEEeeeEEEEeCCCCCC
Q psy23 199 IVGLTEQVVDSVEEVLKLIQHGNSASINNICFSFLQVHGKFSLIDLAGNER 249 (386)
Q Consensus 199 v~~l~~~~V~s~~e~~~ll~~g~~~r~~h~i~~l~~~~s~L~~VDLAGsEr 249 (386)
+.|+.-..|.++.|+...+..-. ...+.|||.||--.
T Consensus 258 im~vp~~vv~~~~el~~ai~~l~--------------~~d~ILVDTaGrs~ 294 (407)
T COG1419 258 IMGVPLEVVYSPKELAEAIEALR--------------DCDVILVDTAGRSQ 294 (407)
T ss_pred HhCCceEEecCHHHHHHHHHHhh--------------cCCEEEEeCCCCCc
Confidence 34667778888888888776432 23678999999644
No 147
>PRK10536 hypothetical protein; Provisional
Probab=59.43 E-value=5.4 Score=38.27 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=26.6
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.|.|..+-+-+..|..... .+.+ +.-++..|+.||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 3455555555555544332 2333 3478999999999999753
No 148
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=58.95 E-value=5.5 Score=36.97 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=24.1
Q ss_pred hhhHHHHHHhcCc---CceeeeeccCCCCCceee
Q psy23 96 SAKPLVKTIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 96 ~~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
+.-|-+|.++.|. ...++.+|.+|||||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3456678888754 677888999999998764
No 149
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=58.72 E-value=6.3 Score=40.62 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=19.6
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+..+++|.| ++..++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 34556678887 68888999999965
No 150
>KOG1514|consensus
Probab=58.38 E-value=11 Score=40.80 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=29.8
Q ss_pred HHHHHHh--cCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcCCC
Q psy23 99 PLVKTIF--EGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157 (386)
Q Consensus 99 plv~~~l--~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~~ 157 (386)
..++.++ +|..+|+..-|..|||||.|..+ .++.|-...++..
T Consensus 410 ~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~----------------Vm~~Lq~~s~~~e 454 (767)
T KOG1514|consen 410 DFLRSFISDQGLGSCMYISGVPGTGKTATVLE----------------VMKELQTSSAQKE 454 (767)
T ss_pred HHHHhhcCCCCCceeEEEecCCCCCceehHHH----------------HHHHHHHHHhhcC
Confidence 3444444 36667888889999999999865 6666665555433
No 151
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.26 E-value=4.2 Score=40.28 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=14.8
Q ss_pred cCceeeeeccCCCCCcee
Q psy23 108 GMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~T 125 (386)
..+.|+..|+||||||+-
T Consensus 96 ~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeccEEEECCCCCcHHHH
Confidence 346689999999999963
No 152
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=57.95 E-value=3.4 Score=34.97 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=13.3
Q ss_pred eeeeccCCCCCceeec
Q psy23 112 CFAYGQTGSGKTHTMG 127 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~ 127 (386)
++-+|++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4679999999999763
No 153
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=57.71 E-value=5.4 Score=40.71 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+..+++|-+ +++.++||||||.+
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHH
Confidence 34566778876 78899999999986
No 154
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=57.35 E-value=6.6 Score=38.75 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=14.6
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..+...|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456667999999999974
No 155
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=57.13 E-value=3.7 Score=39.45 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCC
Q psy23 308 SRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPP 349 (386)
Q Consensus 308 s~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~ 349 (386)
++|+++++ .+.+|. ++.|+|+--++......-..
T Consensus 186 ~kTivfVT-----HDidEA---~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 186 GKTIVFVT-----HDIDEA---LKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred CCEEEEEe-----cCHHHH---HhhhceEEEecCCeEEEeCC
Confidence 57777775 566666 78888887666544444333
No 156
>PRK04195 replication factor C large subunit; Provisional
Probab=56.99 E-value=6.1 Score=41.18 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=21.7
Q ss_pred hhHHHHHHhcCc-CceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGG-MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~-n~ti~aYGqtgSGKT~Tm 126 (386)
+..+++....|. .-.++.||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344455555554 457889999999999876
No 157
>PRK04328 hypothetical protein; Provisional
Probab=56.64 E-value=7.3 Score=36.85 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.3
Q ss_pred hhHHHHHHhcC---cCceeeeeccCCCCCcee
Q psy23 97 AKPLVKTIFEG---GMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 97 ~~plv~~~l~G---~n~ti~aYGqtgSGKT~T 125 (386)
.-+-+|.++.| ...+++.+|++|+|||.-
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 34567888877 478889999999999864
No 158
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=56.63 E-value=3.4 Score=40.64 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=51.5
Q ss_pred eeeeccCCCCCceeecc----CCCCCC------cccccchhhhhHHHHHHH--hcCCCC---CC----ceee-----EEE
Q psy23 112 CFAYGQTGSGKTHTMGG----DFQGKT------QDCKKGIYAMAAKDVFKL--LKSPKY---RG----LNLH-----VSA 167 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~G----~~~~~~------~~~~~Gli~r~~~~LF~~--~~~~~~---~~----~~~~-----v~v 167 (386)
...||+|||||++-+-- ..-.+. -.++.|+||--=....+. .+..-. ++ ..-+ |.+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~m 169 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVEM 169 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccceee
Confidence 36799999999998732 110000 024667777643333322 221110 11 1112 556
Q ss_pred EEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhccc
Q psy23 168 SFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNS 222 (386)
Q Consensus 168 S~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~ 222 (386)
+|=|.-.++=+|.=+|+. +...-..++.+.|. ++|+|+-|-.+.+
T Consensus 170 sy~e~t~~~NldI~~p~N-iF~~Aa~~GPiaII---------mDECMe~Lg~~~~ 214 (369)
T PF02456_consen 170 SYDEATSPENLDITNPNN-IFAQAAKKGPIAII---------MDECMEKLGSHKS 214 (369)
T ss_pred cHhhhCCccccCCCCchH-HHHHHHhcCCEEEE---------hHHHHHHhcCCCC
Confidence 666656666666654432 22222234444444 7888888776644
No 159
>PF05729 NACHT: NACHT domain
Probab=56.57 E-value=4.2 Score=34.68 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999876
No 160
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=56.33 E-value=5.6 Score=40.47 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=19.2
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..++.|.| |++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 4556788887 566779999999763
No 161
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=55.82 E-value=6.5 Score=40.57 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=20.5
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+..+++|.| +++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34566788887 688899999999863
No 162
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=55.44 E-value=8.1 Score=37.39 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=22.1
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+.||+ ..+.--+..+-.||++++|||.++
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 45666 555555667778999999999887
No 163
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=55.31 E-value=8.4 Score=35.41 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=23.4
Q ss_pred hhHHHHHHhcCc---CceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
.-|-+|.++.|. ...+..+|.+|||||..+
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 456688888654 456789999999999875
No 164
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=55.21 E-value=4.3 Score=40.64 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=27.6
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|.|..|.+ |+++= .-++..+.+-.-+.|+.+|.+|||||+.+
T Consensus 13 ~~pf~~ivG----q~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 13 VFPFTAIVG----QEEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCHHHHhC----hHHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 567777766 33332 33444444433356889999999999986
No 165
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.80 E-value=8.5 Score=37.10 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++-||++|+|||+..
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999876
No 166
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=54.78 E-value=3.9 Score=38.26 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=16.6
Q ss_pred CceeeeeccCCCCCceeecc
Q psy23 109 MATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~G 128 (386)
...++-||.+|+|||+..-.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 35589999999999998744
No 167
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=54.76 E-value=5.4 Score=38.43 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=19.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+++..+.. +--++-.|++|+|||-.+
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444543 556799999999999865
No 168
>PRK14974 cell division protein FtsY; Provisional
Probab=54.34 E-value=12 Score=37.26 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=15.6
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
...|...|.+|+|||.|+-
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 3567788999999999973
No 169
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=54.27 E-value=11 Score=41.33 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=27.3
Q ss_pred hHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+|.-.-.-.-.-.-.|.|.||+.-|.+|||||.|.
T Consensus 72 ~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 72 PPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 45666544333333333789999999999999999986
No 170
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.07 E-value=6.2 Score=40.25 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=19.4
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+...+-.+.-..++-||++|+|||+..
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 333334555557788999999999876
No 171
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=54.04 E-value=8 Score=42.15 Aligned_cols=32 Identities=31% Similarity=0.319 Sum_probs=21.7
Q ss_pred hhhHHHHHHhc-----CcCceeeeeccCCCCCceeecc
Q psy23 96 SAKPLVKTIFE-----GGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 96 ~~~plv~~~l~-----G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+..+++++.+ |.+..++ .-+||||||+||..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli-~~~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLI-WHTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEE-EEecCCCccHHHHH
Confidence 35666777766 3444444 44899999999964
No 172
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=53.92 E-value=8 Score=37.81 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=21.3
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+.++++..+.+. ..++-.|++|||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 345566666544 56778899999999976
No 173
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=53.76 E-value=4.3 Score=30.16 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=12.6
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999765
No 174
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=53.68 E-value=6.5 Score=45.40 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=20.5
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..+.+.+-+|.... +..-+||||||+|+.+
T Consensus 423 ~ai~~a~~~g~r~~-Ll~maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREI-LLAMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCe-EEEeCCCCCHHHHHHH
Confidence 33445555676554 4458999999999865
No 175
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=53.64 E-value=6.8 Score=42.48 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=19.5
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.|..++..- ..++..|++|||||||+..
T Consensus 165 Av~~~l~~~-~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 165 AVSFALSSK-DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHHhcCC-CeEEEEcCCCCCHHHHHHH
Confidence 344455432 3456899999999999864
No 176
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=53.48 E-value=7.1 Score=38.32 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.6
Q ss_pred hcCcCceeeeeccCCCCCceeecc
Q psy23 105 FEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 105 l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
-..-+.-++-||+.|||||.+|.-
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHH
Confidence 345667789999999999999854
No 177
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=53.32 E-value=7.9 Score=35.69 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.0
Q ss_pred hhHHHHHHhcC---cCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEG---GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G---~n~ti~aYGqtgSGKT~Tm 126 (386)
.-+-+|.++.| ....+.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 34567888875 3456788999999999875
No 178
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=52.94 E-value=13 Score=38.52 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=16.1
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567888999999999984
No 179
>KOG0335|consensus
Probab=52.84 E-value=6.3 Score=40.93 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=36.6
Q ss_pred hcCcCceeeeeccCCCCCceeeccCC------CCC--Ccccccchhhh---------hHHHHHHHhcCCCCCCceeeEEE
Q psy23 105 FEGGMATCFAYGQTGSGKTHTMGGDF------QGK--TQDCKKGIYAM---------AAKDVFKLLKSPKYRGLNLHVSA 167 (386)
Q Consensus 105 l~G~n~ti~aYGqtgSGKT~Tm~G~~------~~~--~~~~~~Gli~r---------~~~~LF~~~~~~~~~~~~~~v~v 167 (386)
.+|.+ ++|.+|||||||+...++. +.. ......+-.|+ .+.+||.+... ..|.-.+
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k-----~~~~s~~ 181 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK-----FSYLSGM 181 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh-----hcccccc
Confidence 34554 4899999999999987641 000 00001111222 45677776543 3455566
Q ss_pred EEEEEEcC
Q psy23 168 SFFEIYSG 175 (386)
Q Consensus 168 S~~EIyne 175 (386)
-...+|+.
T Consensus 182 ~~~~~ygg 189 (482)
T KOG0335|consen 182 KSVVVYGG 189 (482)
T ss_pred eeeeeeCC
Confidence 66777876
No 180
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=52.44 E-value=13 Score=40.65 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=26.9
Q ss_pred hHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+|.-. ......++ .|.|.||+.-|.+|||||.|.
T Consensus 72 ~PHifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 72 SPHVYAIA-DTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCCHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 34666543 33333444 699999999999999999986
No 181
>PF13173 AAA_14: AAA domain
Probab=52.43 E-value=5.2 Score=33.47 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.4
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.++-+|+.|+|||+.+.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999999763
No 182
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=52.25 E-value=9.1 Score=34.96 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred hHHHHHHhc-CcC--ceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFE-GGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~-G~n--~ti~aYGqtgSGKT~Tm 126 (386)
-+-+|.++. |+. ..+..+|++|||||...
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 355788886 433 44789999999999875
No 183
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=51.96 E-value=7.8 Score=38.48 Aligned_cols=63 Identities=24% Similarity=0.271 Sum_probs=44.2
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHH
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFK 151 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~ 151 (386)
-.|..|-..+.++.+==.+....+|+.++ +|+. .|.||.+|.|||+.+. ..+|..-+-+++|-
T Consensus 58 ~~f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL----------~l~IalaaG~~lfG 121 (402)
T COG3598 58 QSFIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLL----------YLCIALAAGKNLFG 121 (402)
T ss_pred hheeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHH----------HHHHHHHhhHHHhc
Confidence 35557777777766644455666777776 5664 4789999999999875 35666666677776
No 184
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=51.75 E-value=10 Score=39.30 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=18.4
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...++..+..|- .|+-||++|+|||+..
T Consensus 184 le~l~~~L~~~~--~iil~GppGtGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKK--NIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCC--CEEEECCCCCCHHHHH
Confidence 334444444544 4455999999999864
No 185
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=51.68 E-value=5.9 Score=34.97 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=13.0
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+.+|..|||||+..
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999863
No 186
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.43 E-value=8.9 Score=39.75 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=20.4
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
...+..+++|.+ +++..+||||||.+
T Consensus 17 ~~ai~~~l~g~d--vlv~apTGsGKTl~ 42 (470)
T TIGR00614 17 LEVINAVLLGRD--CFVVMPTGGGKSLC 42 (470)
T ss_pred HHHHHHHHcCCC--EEEEcCCCCcHhHH
Confidence 346677888986 56778999999975
No 187
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=51.27 E-value=4.8 Score=37.73 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=17.3
Q ss_pred HHhcCcCce------eeeeccCCCCCceee
Q psy23 103 TIFEGGMAT------CFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~n~t------i~aYGqtgSGKT~Tm 126 (386)
.+|+|.|.+ +.-.|++|||||+.+
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 346666655 356799999999865
No 188
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=51.26 E-value=13 Score=40.61 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=26.1
Q ss_pred hHHHHHhhhhHHHHHH-hcCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTI-FEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~-l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+|.-.-. ...++ -.|.|.||+.-|.+|||||.+.
T Consensus 68 pPHifaiA~~-Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 68 SPHVFAIADA-AYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CCCHHHHHHH-HHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 3456653322 22333 3689999999999999999986
No 189
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.26 E-value=6.3 Score=39.56 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=27.4
Q ss_pred ceeeeeccCCCCCceee--------------ccCCCCCCcccccchhhhhHHHHHHHhcCCC
Q psy23 110 ATCFAYGQTGSGKTHTM--------------GGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm--------------~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~~ 157 (386)
--|+-||+.|+|||--- .|+. --..--|==+|.++++|....++.
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE---lVqKYiGEGaRlVRelF~lAreka 244 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE---LVQKYIGEGARLVRELFELAREKA 244 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH---HHHHHhccchHHHHHHHHHHhhcC
Confidence 34899999999998532 1210 000011222688999999887754
No 190
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=51.13 E-value=11 Score=34.54 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=23.4
Q ss_pred hhHHHHHHhcCc---CceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFEGG---MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm~ 127 (386)
.-+-+|.++.|. ...+.-+|++|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 456778888653 4567789999999998753
No 191
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=50.73 E-value=12 Score=34.67 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=21.8
Q ss_pred HHHHHhhhhHHHHHHhc-CcCceeeeeccCCCCCceee
Q psy23 90 PLDFRFSAKPLVKTIFE-GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 90 ~~vf~~~~~plv~~~l~-G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+|..++.-+....-. +....|.-.|.+|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 44555555544433333 33334445599999999865
No 192
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=50.63 E-value=14 Score=40.36 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=26.7
Q ss_pred hHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+|.-. ......++ .|.|.||+.-|.+|||||.+.
T Consensus 66 ~PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 66 PPHIFAIS-DNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCCHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 35566533 33333333 689999999999999999986
No 193
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=50.62 E-value=5.3 Score=36.84 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|+.|||||.+|
T Consensus 28 ~~ivGpNGaGKSTll 42 (212)
T cd03274 28 SAIVGPNGSGKSNVI 42 (212)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999987
No 194
>PRK07261 topology modulation protein; Provisional
Probab=50.59 E-value=6.3 Score=34.99 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.6
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998753
No 195
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=50.52 E-value=13 Score=40.68 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 90 PLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 90 ~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA-~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIA-DVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 4566533 22333333 689999999999999999986
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=50.37 E-value=12 Score=35.61 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=19.9
Q ss_pred hhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 95 FSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 95 ~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+.+.++..+..|. -|+-+|++|+|||...
T Consensus 9 ~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 9 RVTSRALRYLKSGY--PVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHhcCC--eEEEEcCCCCCHHHHH
Confidence 33444555555555 4566999999999864
No 197
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=50.30 E-value=6.1 Score=33.69 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=12.1
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
++..|..|||||+.
T Consensus 2 i~l~G~~GsGKST~ 15 (150)
T cd02021 2 IVVMGVSGSGKSTV 15 (150)
T ss_pred EEEEcCCCCCHHHH
Confidence 56789999999876
No 198
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=50.30 E-value=7.1 Score=39.17 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.0
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|+..+|++.|++|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 699999999999999999743
No 199
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=50.21 E-value=8.7 Score=38.63 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.0
Q ss_pred eeeeccCCCCCceeec
Q psy23 112 CFAYGQTGSGKTHTMG 127 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~ 127 (386)
++..|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999875
No 200
>KOG1547|consensus
Probab=50.19 E-value=17 Score=34.78 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=25.5
Q ss_pred HHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 93 FRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 93 f~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
|+.+..++=...+ .||...|+..||+|.|||..+
T Consensus 29 idtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 29 IDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred HHHHHHHHHHHHHhccCceEEEEEecCCCCchhhH
Confidence 4455555544444 799999999999999998643
No 201
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=50.12 E-value=13 Score=40.75 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=27.3
Q ss_pred ChHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 88 TVPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 88 sq~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
-...+|.-. ......++ .+.|.||+.-|.+|||||.+.
T Consensus 70 ~~PHiyaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 70 MPPHIFAIA-DNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCCCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 345666543 33333333 699999999999999999986
No 202
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=50.04 E-value=5.9 Score=38.17 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.8
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999999765
No 203
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=49.81 E-value=13 Score=40.53 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=27.4
Q ss_pred hHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+|.-. .....+++ .|.|.+|+.-|.+|||||.+.
T Consensus 66 pPHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 66 PPHVFAIA-DRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCCHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 35566533 33444444 599999999999999999986
No 204
>PRK00131 aroK shikimate kinase; Reviewed
Probab=49.68 E-value=7 Score=33.84 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.5
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36889999999999874
No 205
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=49.55 E-value=18 Score=34.13 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCCChHHHHHhhhhHHHHHHhc-C-cCceeeeeccCCCCCcee
Q psy23 85 LKNTVPLDFRFSAKPLVKTIFE-G-GMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 85 ~~~sq~~vf~~~~~plv~~~l~-G-~n~ti~aYGqtgSGKT~T 125 (386)
+=..|+++-+. .+.+++.+.. | .-..++-||+.|.|||..
T Consensus 25 efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 25 EFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 33457777765 4667777654 2 334688999999999864
No 206
>KOG3859|consensus
Probab=49.55 E-value=8 Score=37.56 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=23.4
Q ss_pred hHHHH-HHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVK-TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~-~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+|. ++-+||...|++.|.||.|||.-|
T Consensus 30 dQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 34553 455899999999999999999755
No 207
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=49.53 E-value=11 Score=39.82 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=31.6
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCc
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKT 123 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT 123 (386)
....|.||.+.+.+..-.++-+.+ .-..+.+++|+-+|.||+||-
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~a------kr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELA------KRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHH------HhhcCCCCcEEEecCCCccHH
Confidence 345688998888664433322221 345789999999999999994
No 208
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=49.50 E-value=15 Score=40.19 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=26.5
Q ss_pred hHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+|.-.- .....++ .|.|.||+.-|.+|||||.+.
T Consensus 66 ~PHifaiA~-~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 66 PPHIYALAD-NAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCCHHHHHH-HHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 355665432 2233333 689999999999999999986
No 209
>PRK08118 topology modulation protein; Reviewed
Probab=49.45 E-value=6.7 Score=34.71 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=11.7
Q ss_pred eeeeccCCCCCce
Q psy23 112 CFAYGQTGSGKTH 124 (386)
Q Consensus 112 i~aYGqtgSGKT~ 124 (386)
|+..|++|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 6789999999995
No 210
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=49.43 E-value=10 Score=40.89 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=28.8
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..|+.+++ |+..... ++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiG----qs~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVG----QERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhcee----CcHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 45666664 3333332 455556678888999999999999865
No 211
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=49.38 E-value=15 Score=40.16 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=26.8
Q ss_pred hHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+|.-. ......++ .|.|.||+.-|.+|||||.|.
T Consensus 67 ~PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 67 PPHLFAIA-NLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 34566543 33333333 799999999999999999986
No 212
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=49.29 E-value=14 Score=40.77 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 90 PLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 90 ~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+|.-. ......++ .|.|.||+.-|.+|||||.|.
T Consensus 72 PHifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 72 PHVFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred CcHHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 4566533 23333333 689999999999999999986
No 213
>KOG1803|consensus
Probab=49.26 E-value=13 Score=39.74 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.1
Q ss_pred ceeeeeccCCCCCceeecc
Q psy23 110 ATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~G 128 (386)
--.+--|+.|+|||||+.-
T Consensus 202 ~l~~I~GPPGTGKT~TlvE 220 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVE 220 (649)
T ss_pred CceEeeCCCCCCceeeHHH
Confidence 3456679999999999843
No 214
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=49.18 E-value=6.8 Score=33.29 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999754
No 215
>KOG0340|consensus
Probab=49.14 E-value=5.6 Score=39.82 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=31.3
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHH
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAK 147 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~ 147 (386)
..+|-.+|+|-++ +....||||||..+-.+.-..-..+..|++..++.
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 3467788999987 66779999999998765322222334565555443
No 216
>PHA02624 large T antigen; Provisional
Probab=49.08 E-value=13 Score=40.03 Aligned_cols=29 Identities=28% Similarity=0.225 Sum_probs=23.5
Q ss_pred hHHHHHHhcCcCc--eeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMA--TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~--ti~aYGqtgSGKT~Tm 126 (386)
..+++.++.|... +++-||+.|||||+-.
T Consensus 418 ~~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 418 YDILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3446777888776 9999999999999864
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=48.71 E-value=17 Score=36.60 Aligned_cols=66 Identities=9% Similarity=0.177 Sum_probs=37.1
Q ss_pred EEcCCCCChHHHHHhhhhHHHHHHhcC---cCceeeeeccCCCCCceee---------------------ccC-CCCCCc
Q psy23 81 KVLSLKNTVPLDFRFSAKPLVKTIFEG---GMATCFAYGQTGSGKTHTM---------------------GGD-FQGKTQ 135 (386)
Q Consensus 81 ~vf~~~~sq~~vf~~~~~plv~~~l~G---~n~ti~aYGqtgSGKT~Tm---------------------~G~-~~~~~~ 135 (386)
.+|+.+ +.-+.++. .+.....| -+-.+.-.|+.|||||... -|. ...+..
T Consensus 52 ~~~G~~----~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~ 126 (361)
T smart00763 52 DFFGME----EAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMH 126 (361)
T ss_pred hccCcH----HHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCc
Confidence 577744 33444443 23333344 3455678899999999643 120 012223
Q ss_pred ccccchhhhhHHHHHH
Q psy23 136 DCKKGIYAMAAKDVFK 151 (386)
Q Consensus 136 ~~~~Gli~r~~~~LF~ 151 (386)
+.--||+|...+..|.
T Consensus 127 e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 127 EDPLHLFPDELREDLE 142 (361)
T ss_pred cCCcccCCHHHHHHHH
Confidence 3345888888888774
No 218
>PRK06696 uridine kinase; Validated
Probab=48.66 E-value=14 Score=34.06 Aligned_cols=29 Identities=31% Similarity=0.209 Sum_probs=18.5
Q ss_pred hhHHHHHHh---cCcCceeeeeccCCCCCcee
Q psy23 97 AKPLVKTIF---EGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 97 ~~plv~~~l---~G~n~ti~aYGqtgSGKT~T 125 (386)
+..|.+.++ .+....|..-|.+|||||+.
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTl 38 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTF 38 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHH
Confidence 444555554 23344455669999999985
No 219
>KOG2373|consensus
Probab=48.66 E-value=15 Score=36.93 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=21.9
Q ss_pred hHHHHHHhcCcCcee--eeeccCCCCCceeecc
Q psy23 98 KPLVKTIFEGGMATC--FAYGQTGSGKTHTMGG 128 (386)
Q Consensus 98 ~plv~~~l~G~n~ti--~aYGqtgSGKT~Tm~G 128 (386)
-|.++..+.|.--.= +-.|+||||||..|..
T Consensus 260 FpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsE 292 (514)
T KOG2373|consen 260 FPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSE 292 (514)
T ss_pred hhHHHHHhccCCCCceEEEecCCCCCceeEehH
Confidence 466777887765332 2349999999998854
No 220
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=48.58 E-value=12 Score=38.41 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.1
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..-++.+-+|....-|..|.-||||||.+
T Consensus 37 l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 37 LDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 333467888998888899999999999987
No 221
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=48.43 E-value=6.3 Score=34.21 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.2
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|+..|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999864
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.27 E-value=6.3 Score=40.52 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=14.3
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.++-.|++|+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999974
No 223
>KOG2228|consensus
Probab=47.91 E-value=17 Score=36.36 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=75.8
Q ss_pred EcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCC-------CCcccccchhhh---hHHHHHH
Q psy23 82 VLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQG-------KTQDCKKGIYAM---AAKDVFK 151 (386)
Q Consensus 82 vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~-------~~~~~~~Gli~r---~~~~LF~ 151 (386)
.|+....|..+++- +-+.++.|-.-+++-.|+.|||||+-+---... ...-.-.|.+.- |+..|=.
T Consensus 26 l~g~~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 26 LFGVQDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred eeehHHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 35555666666654 335677899999999999999999987321110 000011244444 5666655
Q ss_pred HhcCCCCCCceeeEEEEEEEE--------------------EcCeeeeccccccc-------ceEEEcCCCceEEeccEE
Q psy23 152 LLKSPKYRGLNLHVSASFFEI--------------------YSGKVFDLLAEKAK-------LRVLEDGKQQVQIVGLTE 204 (386)
Q Consensus 152 ~~~~~~~~~~~~~v~vS~~EI--------------------yne~v~DLL~~~~~-------l~i~ed~~~~~~v~~l~~ 204 (386)
+++..... ...+..||-|. +-.+=+||..+... ..+.++....+.|-|
T Consensus 102 ql~~e~~~--~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig--- 176 (408)
T KOG2228|consen 102 QLALELNR--IVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIG--- 176 (408)
T ss_pred HHHHHHhh--hheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEE---
Confidence 55433211 23344444441 11111455544321 222333444444444
Q ss_pred EEeCCHHHHHHHHHhccccccceeEEEE
Q psy23 205 QVVDSVEEVLKLIQHGNSASINNICFSF 232 (386)
Q Consensus 205 ~~V~s~~e~~~ll~~g~~~r~~h~i~~l 232 (386)
|++--++.++|++--+.|-+|-++.+
T Consensus 177 --~Ttrld~lE~LEKRVKSRFshr~I~m 202 (408)
T KOG2228|consen 177 --VTTRLDILELLEKRVKSRFSHRVIFM 202 (408)
T ss_pred --eeccccHHHHHHHHHHhhcccceeec
Confidence 44566777888877777778875554
No 224
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=47.18 E-value=10 Score=40.03 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=31.2
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+.|+.+++.+..-.++.+.+ +. +...+..|+-+|.+||||++.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~-----~~-~a~~~~pvli~Ge~GtGK~~l 235 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQA-----RV-VARSNSTVLLRGESGTGKELI 235 (534)
T ss_pred ccCccCceEECCHHHHHHHHHH-----HH-HhCcCCCEEEECCCCccHHHH
Confidence 3478888888665554444432 12 235688899999999999875
No 225
>KOG1532|consensus
Probab=46.96 E-value=21 Score=34.74 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=14.9
Q ss_pred CceeeeeccCCCCCcee
Q psy23 109 MATCFAYGQTGSGKTHT 125 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~T 125 (386)
..+|+..|..|||||..
T Consensus 19 p~~ilVvGMAGSGKTTF 35 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTF 35 (366)
T ss_pred CcEEEEEecCCCCchhH
Confidence 46899999999999974
No 226
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=46.94 E-value=16 Score=40.06 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=25.8
Q ss_pred HHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 90 PLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 90 ~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+|.-. ......++ .|.|.||+.-|.+|||||.+.
T Consensus 67 PHifaiA-~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 67 PHIFAIA-EEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 4566433 22233333 799999999999999999886
No 227
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=46.68 E-value=22 Score=37.12 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=22.0
Q ss_pred hHHHHHHhcC---cCceeeeeccCCCCCcee
Q psy23 98 KPLVKTIFEG---GMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 98 ~plv~~~l~G---~n~ti~aYGqtgSGKT~T 125 (386)
-|=+|.++.| .+.+++.+|++|||||.-
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLF 37 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHH
Confidence 3456788875 367889999999999865
No 228
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=46.64 E-value=7.9 Score=34.36 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.9
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+.+|+.|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999654
No 229
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=46.59 E-value=11 Score=37.60 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=22.6
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...++..++.+. ..++..|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 456666777654 78899999999998876
No 230
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=46.53 E-value=6.6 Score=41.08 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=27.7
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHH-HHhc--C--cCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVK-TIFE--G--GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~--G--~n~ti~aYGqtgSGKT~Tm 126 (386)
..+||.|.+.+.-.+++.+ .+..+-. ..+. | ..-.++-||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 4567777665544444332 2221110 0111 2 2235889999999999986
No 231
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=46.42 E-value=6.5 Score=34.71 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=14.4
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
+..+-||++|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45678999999999876
No 232
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=46.41 E-value=7.3 Score=38.31 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.1
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..++-||++|+|||+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 457889999999999863
No 233
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=46.11 E-value=7.5 Score=32.16 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||..+
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999876
No 234
>CHL00181 cbbX CbbX; Provisional
Probab=46.05 E-value=7.7 Score=37.64 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
++-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 235
>PHA02653 RNA helicase NPH-II; Provisional
Probab=45.98 E-value=15 Score=40.24 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=19.7
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
+.++..+++|.+ ++..|+||||||..
T Consensus 170 ~qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 170 LKIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHHhCCC--EEEECCCCCCchhH
Confidence 445566667754 58999999999975
No 236
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=45.59 E-value=19 Score=35.00 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=14.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+.-|.+|||||..|
T Consensus 3 ~vIiTGlSGaGKs~Al 18 (284)
T PF03668_consen 3 LVIITGLSGAGKSTAL 18 (284)
T ss_pred EEEEeCCCcCCHHHHH
Confidence 4678899999999998
No 237
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=45.55 E-value=14 Score=34.09 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=21.5
Q ss_pred hHHHHHHhc-Cc--CceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFE-GG--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~-G~--n~ti~aYGqtgSGKT~Tm 126 (386)
-+-+|.++. |+ ...++.+|++|+|||+..
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 345677774 44 566788999999999865
No 238
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=45.46 E-value=7.1 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999987
No 239
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.39 E-value=11 Score=40.25 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=20.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|..+++|.| |++..+||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 4566789988 677899999999763
No 240
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=44.99 E-value=9.4 Score=33.59 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.9
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999864
No 241
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.78 E-value=7.6 Score=40.64 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..+.-.|++|+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 356677999999999974
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.55 E-value=18 Score=37.15 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=15.3
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..|.-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 467788999999999973
No 243
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=44.49 E-value=13 Score=41.04 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.6
Q ss_pred cCcCceeeeeccCCCCCceeec
Q psy23 106 EGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.+--..++-||++|+|||+...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4545578889999999998863
No 244
>PRK06217 hypothetical protein; Validated
Probab=44.45 E-value=8.6 Score=34.30 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=12.3
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|+..|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999975
No 245
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=44.33 E-value=14 Score=35.86 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=23.6
Q ss_pred hhHHHHHHhcCc---CceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFEGG---MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm~ 127 (386)
..+-++.++.|. ...+..||++|||||..+.
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 445678888765 5556899999999998753
No 246
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=44.27 E-value=13 Score=38.57 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=18.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++-+..|... ++.||+.|||||...
T Consensus 190 AleiAAAGgHn-Ll~~GpPGtGKTmla 215 (490)
T COG0606 190 ALEIAAAGGHN-LLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHhcCCc-EEEecCCCCchHHhh
Confidence 33333345444 688999999999876
No 247
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.18 E-value=18 Score=40.01 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=14.9
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..|.-.|++|+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 356678999999999983
No 248
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=44.14 E-value=9.6 Score=41.95 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45889999999999764
No 249
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=44.07 E-value=19 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=14.3
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
.+|...|++|+|||.|+.
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455566999999999974
No 250
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=44.03 E-value=7.7 Score=39.56 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.2
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 446789999999999876
No 251
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=43.77 E-value=16 Score=38.46 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.5
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+..++.|.| +++..+||||||.+
T Consensus 150 ~aip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 150 QAIPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHHHhcCCC--EEEEecCCCCccHH
Confidence 34566778875 68889999999965
No 252
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=43.62 E-value=15 Score=39.87 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=19.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556678876 788899999999864
No 253
>KOG0739|consensus
Probab=43.59 E-value=9.6 Score=37.51 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=48.8
Q ss_pred eeeEEcCCCCChHHHHHhhhhHH-HHHHhcCcC---ceeeeeccCCCCCceeeccCC--------CCCCc---ccccchh
Q psy23 78 RCWKVLSLKNTVPLDFRFSAKPL-VKTIFEGGM---ATCFAYGQTGSGKTHTMGGDF--------QGKTQ---DCKKGIY 142 (386)
Q Consensus 78 ~fd~vf~~~~sq~~vf~~~~~pl-v~~~l~G~n---~ti~aYGqtgSGKT~Tm~G~~--------~~~~~---~~~~Gli 142 (386)
+.+.|=+.+..-+.+=+.++-|+ .-++|.|.- ..|+.||+.|+||+|---.-. .-... ..=.|=-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 45556665666666666676666 356676664 679999999999999542100 00000 0001333
Q ss_pred hhhHHHHHHHhcCCC
Q psy23 143 AMAAKDVFKLLKSPK 157 (386)
Q Consensus 143 ~r~~~~LF~~~~~~~ 157 (386)
-+.+..||+...+++
T Consensus 211 EkLVknLFemARe~k 225 (439)
T KOG0739|consen 211 EKLVKNLFEMARENK 225 (439)
T ss_pred HHHHHHHHHHHHhcC
Confidence 468889999887755
No 254
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=43.42 E-value=16 Score=36.41 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=21.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+.+.+|-+..++...+||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 345667888778889999999999874
No 255
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=43.17 E-value=9 Score=37.04 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.9
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
-++-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999864
No 256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=42.90 E-value=13 Score=37.98 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=26.1
Q ss_pred ChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 88 TVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 88 sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.|+.+... ..||-.-+-.|.-.+.+-||+.|+|||.-
T Consensus 28 GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 35555544 34555555567778889999999999964
No 257
>PRK14531 adenylate kinase; Provisional
Probab=42.83 E-value=9.9 Score=33.93 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
-|+.+|+.|||||+..
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999863
No 258
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=42.50 E-value=8 Score=39.99 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=13.9
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999875
No 259
>PHA01747 putative ATP-dependent protease
Probab=42.33 E-value=9.6 Score=38.51 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=24.6
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.-|+|+.-..+-|.-++=.|+.||||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 456777556678888899999999999985
No 260
>KOG0729|consensus
Probab=42.19 E-value=12 Score=36.17 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=27.5
Q ss_pred eeeeeccCCCCCceeecc--CCCC---------CCcccccchhhhhHHHHHHHhcCCC
Q psy23 111 TCFAYGQTGSGKTHTMGG--DFQG---------KTQDCKKGIYAMAAKDVFKLLKSPK 157 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~G--~~~~---------~~~~~~~Gli~r~~~~LF~~~~~~~ 157 (386)
-|+.||+.|+|||..--. +..+ ..-...-|==.|.+++||+.....+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk 270 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK 270 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc
Confidence 489999999999865311 0000 0000111333578999999876644
No 261
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=42.16 E-value=8.4 Score=38.63 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=11.6
Q ss_pred eeccCCCCCceee
Q psy23 114 AYGQTGSGKTHTM 126 (386)
Q Consensus 114 aYGqtgSGKT~Tm 126 (386)
-.|++|||||++|
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4599999999987
No 262
>PRK08233 hypothetical protein; Provisional
Probab=42.16 E-value=9.8 Score=33.30 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=11.7
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|..-|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999864
No 263
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=41.82 E-value=21 Score=33.72 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=22.7
Q ss_pred hhHHHHHHhc--CcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFE--GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~--G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 56677889999999999764
No 264
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=41.81 E-value=11 Score=33.26 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999975
No 265
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=41.78 E-value=14 Score=35.64 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=17.1
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
.-+.+|.-+|+=|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45778889999999999966
No 266
>KOG0652|consensus
Probab=41.49 E-value=12 Score=36.27 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=12.9
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.++.||+.|+|||..
T Consensus 207 GvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLM 221 (424)
T ss_pred ceEeeCCCCCcHHHH
Confidence 479999999999854
No 267
>PRK10867 signal recognition particle protein; Provisional
Probab=41.48 E-value=21 Score=36.87 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=15.4
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
...|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3467788999999999873
No 268
>PRK05580 primosome assembly protein PriA; Validated
Probab=41.30 E-value=16 Score=39.88 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=18.5
Q ss_pred HHHHhcC-cCceeeeeccCCCCCceeec
Q psy23 101 VKTIFEG-GMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 101 v~~~l~G-~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++.+++| ....++.+|+||||||.+.+
T Consensus 153 i~~i~~~~~~~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 153 VEAIRAAAGFSPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred HHHHHhccCCCcEEEECCCCChHHHHHH
Confidence 3333443 33458899999999997764
No 269
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=41.27 E-value=21 Score=39.59 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=26.4
Q ss_pred hHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 66 pPHifaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 66 PPHIYSLA-QTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCCHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 34566533 22333333 699999999999999999986
No 270
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=41.21 E-value=11 Score=31.61 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999854
No 271
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=41.02 E-value=20 Score=38.00 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=27.2
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..|+.+++.+.. ++.+...+.......|+-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 456666664422 233334445566677889999999998753
No 272
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=40.98 E-value=9.3 Score=42.29 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.8
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
|..++..|.||||||+++
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 456788999999999998
No 273
>CHL00195 ycf46 Ycf46; Provisional
Probab=40.97 E-value=9.2 Score=40.09 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45999999999999765
No 274
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=40.90 E-value=11 Score=30.36 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=12.7
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 578899999999765
No 275
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=40.87 E-value=9.8 Score=40.13 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=13.7
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999754
No 276
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=40.85 E-value=22 Score=33.98 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=54.6
Q ss_pred HHHhcCcCce-eeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcCCCCCCceeeEEEEEEEEEcCeeeec
Q psy23 102 KTIFEGGMAT-CFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDL 180 (386)
Q Consensus 102 ~~~l~G~n~t-i~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DL 180 (386)
..+++|+-+. |+-||..|+||+. .+..++....... ...+||..+.+.+|
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSS--------------------LVKA~~~e~~~~g---------lrLVEV~k~dl~~L 127 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSS--------------------LVKALLNEYADEG---------LRLVEVDKEDLATL 127 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHH--------------------HHHHHHHHHHhcC---------CeEEEEcHHHHhhH
Confidence 4788998875 7999999999975 4455565554422 33789988877665
Q ss_pred ------ccccccceEEEcCCCceEEeccEEEE-eCCHHHHHHHHHhccccccceeEEEE
Q psy23 181 ------LAEKAKLRVLEDGKQQVQIVGLTEQV-VDSVEEVLKLIQHGNSASINNICFSF 232 (386)
Q Consensus 181 ------L~~~~~l~i~ed~~~~~~v~~l~~~~-V~s~~e~~~ll~~g~~~r~~h~i~~l 232 (386)
|...+...| +++.+|+--. =.++.-+...|+-+...|-.+.+|.-
T Consensus 128 p~l~~~Lr~~~~kFI-------lFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YA 179 (287)
T COG2607 128 PDLVELLRARPEKFI-------LFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYA 179 (287)
T ss_pred HHHHHHHhcCCceEE-------EEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEE
Confidence 222221111 1223333222 12344455566666666666655553
No 277
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=40.85 E-value=46 Score=37.00 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=26.1
Q ss_pred hhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 95 FSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 95 ~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..+..+++++-+|-+-.+++. +||||||+|-+-
T Consensus 172 ~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 172 IAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred HHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 346788899999999955544 699999999653
No 278
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=40.70 E-value=13 Score=34.89 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=24.0
Q ss_pred eeeeccCCCCCceeec------cCCCCCCcccccchhhhhHHHHHHHhcC
Q psy23 112 CFAYGQTGSGKTHTMG------GDFQGKTQDCKKGIYAMAAKDVFKLLKS 155 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~------G~~~~~~~~~~~Gli~r~~~~LF~~~~~ 155 (386)
-..+|++|+|||.|+- |.+- -.-.+.+++=...+..||.-+.+
T Consensus 35 ~~~~GpagtGKtetik~La~~lG~~~-~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARALGRFV-VVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCTT--E-EEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCcCCCCCCchhHHHHHHHHhCCeE-EEecccccccHHHHHHHHHHHhh
Confidence 3569999999999983 3210 00122344445566666665543
No 279
>PRK14532 adenylate kinase; Provisional
Probab=40.66 E-value=11 Score=33.43 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999753
No 280
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=40.61 E-value=15 Score=38.97 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=27.7
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
+.|+.+++.+..-+.+.+. ++ .+...+..|+-+|.+||||++.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~-----i~-~~A~s~~pVLI~GE~GTGKe~~ 258 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQT-----IL-LYARSSAAVLIQGETGTGKELA 258 (538)
T ss_pred cchhheeeCCHHHHHHHHH-----HH-HHhCCCCcEEEECCCCCCHHHH
Confidence 5677777655433332222 22 2355688999999999999764
No 281
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=40.56 E-value=8.8 Score=34.56 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=12.0
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|.-.|++|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999863
No 282
>CHL00176 ftsH cell division protein; Validated
Probab=40.15 E-value=13 Score=40.33 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999875
No 283
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=40.12 E-value=19 Score=35.21 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=23.4
Q ss_pred hhHHHHHHhcCc---CceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFEGG---MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm~ 127 (386)
..+-++.++.|. ...+..||++|||||..+.
T Consensus 87 g~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 87 GSKELDELLGGGIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred CCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHH
Confidence 446677888764 5567799999999998753
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.08 E-value=10 Score=38.62 Aligned_cols=18 Identities=44% Similarity=0.453 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
-.+...|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346678999999999974
No 285
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.92 E-value=17 Score=39.45 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.7
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999999873
No 286
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=39.87 E-value=9.6 Score=38.01 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=12.8
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||++|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999997
No 287
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=39.77 E-value=16 Score=39.89 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=27.2
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
+.|+.+++.+..-..+.+.+ +. +...+..|+-+|.+|||||+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~-----~~-~a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV-----EM-VAQSDSTVLILGETGTGKELI 415 (686)
T ss_pred ccccceeecCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCcCHHHH
Confidence 45566666544433333322 22 345678899999999999874
No 288
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=39.41 E-value=21 Score=33.36 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred hHHHHHHhc-Cc--CceeeeeccCCCCCcee
Q psy23 98 KPLVKTIFE-GG--MATCFAYGQTGSGKTHT 125 (386)
Q Consensus 98 ~plv~~~l~-G~--n~ti~aYGqtgSGKT~T 125 (386)
-+-+|.++. |+ ..+++.+|++|||||..
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 345677775 43 46788999999999874
No 289
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=39.36 E-value=9.5 Score=34.31 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999975
No 290
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=39.21 E-value=22 Score=38.81 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.3
Q ss_pred CcCceeeeeccCCCCCceeec
Q psy23 107 GGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
+....++..|+||||||....
T Consensus 280 ~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 280 PKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred cCCceEEEECCCCCcHHHHHH
Confidence 334468999999999998653
No 291
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=39.06 E-value=18 Score=35.97 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=24.2
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..-++-.+++..-+-++-.|.+|+|||..+-+
T Consensus 13 ~~al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 13 KLALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 34455666776667788999999999988743
No 292
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=38.93 E-value=9.7 Score=35.77 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=16.3
Q ss_pred HhcCcCce------eeeeccCCCCCceee
Q psy23 104 IFEGGMAT------CFAYGQTGSGKTHTM 126 (386)
Q Consensus 104 ~l~G~n~t------i~aYGqtgSGKT~Tm 126 (386)
+++|.|.. +.-.|++|||||.-|
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 44555544 456799999999876
No 293
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.78 E-value=9.8 Score=37.45 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.5
Q ss_pred cCceeeeeccCCCCCceeec
Q psy23 108 GMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm~ 127 (386)
...+|+-.|.||||||+.|.
T Consensus 142 ~~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLN 161 (312)
T ss_pred cCCcEEEECCCCCCHHHHHH
Confidence 34567889999999999874
No 294
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.60 E-value=20 Score=35.61 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=20.0
Q ss_pred hHHHHHHhcCc-CceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGG-MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~-n~ti~aYGqtgSGKT~Tm 126 (386)
+.+.+.+-.|. ...++-||+.|+|||++.
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33444444554 347888999999999875
No 295
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=38.58 E-value=10 Score=42.76 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.0
Q ss_pred cCceeeeeccCCCCCceee
Q psy23 108 GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm 126 (386)
.|+-.+..|+||||||+++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 4777889999999999998
No 296
>PRK04040 adenylate kinase; Provisional
Probab=38.53 E-value=13 Score=33.75 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678999999999864
No 297
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=38.51 E-value=8.1 Score=35.91 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=10.6
Q ss_pred eccCCCCCceee
Q psy23 115 YGQTGSGKTHTM 126 (386)
Q Consensus 115 YGqtgSGKT~Tm 126 (386)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999986
No 298
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=38.50 E-value=13 Score=31.46 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.6
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 366778899999999998853
No 299
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=38.37 E-value=20 Score=35.56 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=24.5
Q ss_pred hhhhHHHHHHhc--Cc--CceeeeeccCCCCCceee
Q psy23 95 FSAKPLVKTIFE--GG--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 95 ~~~~plv~~~l~--G~--n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+-+|.+|. |+ ...+..||++|||||...
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 456778899987 44 345679999999999653
No 300
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=38.33 E-value=12 Score=32.30 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|..+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999764
No 301
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=38.31 E-value=18 Score=37.89 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHHhcCcCce------eeeeccCCCCCceeecc
Q psy23 101 VKTIFEGGMAT------CFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 101 v~~~l~G~n~t------i~aYGqtgSGKT~Tm~G 128 (386)
++.++++.+.. ++-.|++|||||+.|-+
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 44667775444 56789999999998864
No 302
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=38.24 E-value=12 Score=28.45 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceeec
Q psy23 112 CFAYGQTGSGKTHTMG 127 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~ 127 (386)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567888999999853
No 303
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=38.16 E-value=20 Score=33.86 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=18.7
Q ss_pred HHHHhcC---cCceeeeeccCCCCCcee
Q psy23 101 VKTIFEG---GMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 101 v~~~l~G---~n~ti~aYGqtgSGKT~T 125 (386)
++.++.| ....++.+|.+|||||..
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4556654 356788999999999865
No 304
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=38.12 E-value=9.2 Score=38.70 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=13.1
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
--++..|.+|||||.+|.
T Consensus 16 ~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIR 33 (386)
T ss_dssp G-EEEEE-TTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 346889999999998663
No 305
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=37.96 E-value=10 Score=34.84 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.9
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999764
No 306
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=37.88 E-value=16 Score=38.65 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=28.7
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.|.|+.+++.+..-..+.+. ++. +...+..|+-+|.+||||++.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~~~~pVLI~GE~GTGKe~l 251 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRAL-----VRL-YARSDATVLILGESGTGKELV 251 (526)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCcCHHHH
Confidence 47777777755433333222 222 356688999999999999764
No 307
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=37.86 E-value=14 Score=40.05 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=17.6
Q ss_pred cCceeeeeccCCCCCceeecc
Q psy23 108 GMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..+-++..|..|||||.||..
T Consensus 13 ~~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 13 VTGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCCEEEEecCCCCHHHHHHH
Confidence 355688999999999999965
No 308
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.85 E-value=12 Score=38.51 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..+...|++|+|||.|+-
T Consensus 192 ~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTA 209 (420)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456778999999999983
No 309
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.84 E-value=19 Score=37.34 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+..+++|.|.. ...+||||||.+.
T Consensus 115 ~~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 115 AQVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 44667788998854 4669999999664
No 310
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=37.66 E-value=18 Score=38.23 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=30.5
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...+.||.+++.+..-..+.+.+ +. +...+..|+-+|.+||||++..
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 34577888877654433333322 12 2345778999999999998754
No 311
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=37.62 E-value=13 Score=32.18 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.7
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|+..|.+|||||+.
T Consensus 2 i~i~G~~GsGKSTl 15 (149)
T cd02027 2 IWLTGLSGSGKSTI 15 (149)
T ss_pred EEEEcCCCCCHHHH
Confidence 56789999999774
No 312
>PRK06762 hypothetical protein; Provisional
Probab=37.50 E-value=14 Score=32.17 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.0
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|...|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 456679999999873
No 313
>PRK03839 putative kinase; Provisional
Probab=37.44 E-value=13 Score=32.91 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=12.1
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999875
No 314
>PRK09354 recA recombinase A; Provisional
Probab=37.27 E-value=22 Score=35.70 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=24.8
Q ss_pred hhhhHHHHHHhc-Cc---CceeeeeccCCCCCceee
Q psy23 95 FSAKPLVKTIFE-GG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 95 ~~~~plv~~~l~-G~---n~ti~aYGqtgSGKT~Tm 126 (386)
.+..|-+|.+|. |. ...+..||++|||||...
T Consensus 42 sTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLa 77 (349)
T PRK09354 42 STGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLA 77 (349)
T ss_pred cCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 456778899998 43 346779999999999864
No 315
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=36.82 E-value=11 Score=30.97 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999865
No 316
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=36.71 E-value=25 Score=38.02 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=18.7
Q ss_pred HHHHHhcCc----CceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGG----MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~----n~ti~aYGqtgSGKT~Tm 126 (386)
.+..++.+. ....+..|+||||||...
T Consensus 243 ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 243 VVKEILQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred HHHHHHHHhccCCCccEEEECCCCCcHHHHH
Confidence 344444443 334789999999999865
No 317
>KOG2655|consensus
Probab=36.68 E-value=13 Score=37.31 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.0
Q ss_pred HhcCcCceeeeeccCCCCCceee
Q psy23 104 IFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 104 ~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+=+|+.-++++.|++|+|||.-+
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfi 38 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFI 38 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHH
Confidence 44899999999999999998743
No 318
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=36.58 E-value=12 Score=33.50 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999864
No 319
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=36.56 E-value=14 Score=37.79 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=15.2
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...|+-+|++|+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 366999999999999764
No 320
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=36.28 E-value=19 Score=39.89 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.++.++.+ +..++..|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 45556655 34567889999999998854
No 321
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=36.27 E-value=22 Score=38.23 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=19.5
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..++..+++|.++ ++.++||+|||.+
T Consensus 31 ~~ai~~il~g~dv--lv~apTGsGKTl~ 56 (607)
T PRK11057 31 QEIIDAVLSGRDC--LVVMPTGGGKSLC 56 (607)
T ss_pred HHHHHHHHcCCCE--EEEcCCCchHHHH
Confidence 3456677888876 5568999999974
No 322
>PRK01172 ski2-like helicase; Provisional
Probab=36.14 E-value=22 Score=38.67 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHhcCcCceeeeeccCCCCCcee
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
++.+.+|-| ++..++||||||..
T Consensus 31 i~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 31 IEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHhcCCc--EEEECCCCchHHHH
Confidence 344567765 67788999999985
No 323
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=36.04 E-value=15 Score=33.58 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=21.1
Q ss_pred eeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 112 CFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
|+.+|+.|||||+.---- ....|+....+.+|+..
T Consensus 2 I~i~G~pGsGKsT~a~~L------a~~~g~~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRI------AEKYGLPHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHH------HHHcCCCeeehhHHHHH
Confidence 678999999998753110 11245555556566554
No 324
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=35.82 E-value=27 Score=33.27 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=25.1
Q ss_pred hhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 96 ~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..|++..+.+-.-...+..|+.++|||..|
T Consensus 124 t~~~li~~ly~~g~lntLiigpP~~GKTTlL 154 (308)
T COG3854 124 TANPLIKDLYQNGWLNTLIIGPPQVGKTTLL 154 (308)
T ss_pred cchHHHHHHHhcCceeeEEecCCCCChHHHH
Confidence 3577998888776676788999999999754
No 325
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=35.79 E-value=25 Score=34.51 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHHhcCc-CceeeeeccCCCCCceee
Q psy23 101 VKTIFEGG-MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 101 v~~~l~G~-n~ti~aYGqtgSGKT~Tm 126 (386)
.+.+-.|- ...++-||+.|+|||.+.
T Consensus 27 ~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 27 KNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33334443 446789999999999776
No 326
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=35.73 E-value=32 Score=35.49 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=15.6
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
...|+..|.+|+|||+|+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467788999999999974
No 327
>PRK14527 adenylate kinase; Provisional
Probab=35.72 E-value=16 Score=32.79 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.1
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+.+|++|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999998854
No 328
>PTZ00035 Rad51 protein; Provisional
Probab=35.60 E-value=26 Score=34.87 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=24.6
Q ss_pred hhhHHHHHHhcCc---CceeeeeccCCCCCceee
Q psy23 96 SAKPLVKTIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 96 ~~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
+..+-+|.+|.|. ...+.-||++|||||..+
T Consensus 102 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 102 TGSTQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred CCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 4677889999864 455678999999999865
No 329
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=35.60 E-value=15 Score=32.69 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=15.8
Q ss_pred cCcCceeeeeccCCCCCce
Q psy23 106 EGGMATCFAYGQTGSGKTH 124 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~ 124 (386)
..++..|+-+|.+||||+.
T Consensus 19 a~~~~pVlI~GE~GtGK~~ 37 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKEL 37 (168)
T ss_dssp TTSTS-EEEECSTTSSHHH
T ss_pred hCCCCCEEEEcCCCCcHHH
Confidence 4778999999999999975
No 330
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=35.55 E-value=16 Score=32.91 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.9
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 57789999999864
No 331
>PHA02774 E1; Provisional
Probab=35.54 E-value=22 Score=38.09 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=21.4
Q ss_pred HHHHHhcCcC--ceeeeeccCCCCCceeec
Q psy23 100 LVKTIFEGGM--ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 100 lv~~~l~G~n--~ti~aYGqtgSGKT~Tm~ 127 (386)
.+..+++|.- .|++-||+.|+||||-.+
T Consensus 423 ~lk~~l~~~PKknciv~~GPP~TGKS~fa~ 452 (613)
T PHA02774 423 ALKDFLKGIPKKNCLVIYGPPDTGKSMFCM 452 (613)
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 4556666654 589999999999998643
No 332
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.43 E-value=13 Score=38.25 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=14.6
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..++..|++|+|||+|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346677999999999963
No 333
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=35.33 E-value=23 Score=36.42 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.7
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999999874
No 334
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=35.24 E-value=25 Score=38.80 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=23.3
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..+++-+..+....++-||++|+|||...-|
T Consensus 192 ~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 192 ERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 3455545556666788999999999998755
No 335
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=35.19 E-value=16 Score=35.77 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.9
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|+||||||--
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 578889999999875
No 336
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=35.02 E-value=16 Score=33.49 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=20.5
Q ss_pred HHHHHHhcC---cCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEG---GMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G---~n~ti~aYGqtgSGKT~T 125 (386)
|-+|.++.| .+..++.+|++|||||.-
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 456777744 357789999999999865
No 337
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=35.01 E-value=21 Score=37.05 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=25.3
Q ss_pred eeeEEcCCCCChHHHHHhhhhHHHHHHhcCcC-ceeeeeccCCCCCceee
Q psy23 78 RCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGM-ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 78 ~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n-~ti~aYGqtgSGKT~Tm 126 (386)
.||.|++.+ .+ +..+...+-.|.- .+++-||+.|+|||.+.
T Consensus 15 ~~~diiGq~----~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQD----AV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCcH----HH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 566666532 22 3334444444543 45778999999999766
No 338
>PRK14530 adenylate kinase; Provisional
Probab=34.99 E-value=15 Score=33.68 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|++|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999999754
No 339
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=34.70 E-value=18 Score=31.70 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999854
No 340
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=34.69 E-value=22 Score=37.92 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=21.2
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..++..+++|.| +++..+||+|||.+.
T Consensus 19 ~~~i~~il~g~d--vlv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRD--VLVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCC--EEEEcCCCccHhHHH
Confidence 456777889987 466779999999863
No 341
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=34.66 E-value=19 Score=41.05 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=21.8
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
+..|+.++.+.+. ++..|..|+||||+|-
T Consensus 352 r~Av~~il~s~~v-~vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 352 ADALAHVTDGRDL-GVVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHHhcCCCe-EEEEeCCCCCHHHHHH
Confidence 3356777777664 4588999999999863
No 342
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=34.60 E-value=16 Score=37.76 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=26.1
Q ss_pred cCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcC
Q psy23 106 EGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~ 155 (386)
.++| ++-.|++|+||||.-.+-.. ......| -.-.+..||..+..
T Consensus 208 ~~~N--li~lGp~GTGKThla~~l~~--~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 208 PNYN--LIELGPKGTGKSYIYNNLSP--YVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred cCCc--EEEECCCCCCHHHHHHHHhH--HHHHHcC-CcCcHHHHHHHHHH
Confidence 5555 56789999999988754100 0012234 33345667766654
No 343
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=34.42 E-value=19 Score=38.63 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=18.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.+..++. +...+..|..|||||||+.
T Consensus 153 A~~~al~--~~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 153 AVALALK--SNFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHhh--CCeEEEEcCCCCCHHHHHH
Confidence 3445555 3445678999999999963
No 344
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.22 E-value=27 Score=36.49 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=18.5
Q ss_pred HHHHHhcCcC-ceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGM-ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n-~ti~aYGqtgSGKT~Tm 126 (386)
+...+-.|.- ..++-||+.|+|||.+.
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3333334433 45789999999999876
No 345
>KOG0735|consensus
Probab=34.11 E-value=16 Score=39.88 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=29.3
Q ss_pred cCceeeeeccCCCCCceeeccCCCCC----Cc-------ccccchhhhhHHHHHHHhcCCC
Q psy23 108 GMATCFAYGQTGSGKTHTMGGDFQGK----TQ-------DCKKGIYAMAAKDVFKLLKSPK 157 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm~G~~~~~----~~-------~~~~Gli~r~~~~LF~~~~~~~ 157 (386)
..+.|+-||+.|+||||-..--.... .. ..--|-=-..+++||.+.+..+
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK 760 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC
Confidence 34568999999999999653210000 00 0111333457889998877644
No 346
>KOG0745|consensus
Probab=33.74 E-value=19 Score=37.28 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.7
Q ss_pred ceeeeeccCCCCCcee
Q psy23 110 ATCFAYGQTGSGKTHT 125 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~T 125 (386)
+.|+..|+||||||+-
T Consensus 227 SNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL 242 (564)
T ss_pred ccEEEECCCCCchhHH
Confidence 5688999999999963
No 347
>PRK06851 hypothetical protein; Provisional
Probab=33.62 E-value=17 Score=36.60 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=22.2
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+.+.+++|.+-.++--|.+|+|||++|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 445566778888899999999999986
No 348
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=33.58 E-value=31 Score=34.00 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=23.2
Q ss_pred hhhHHHHHHhcC-c--CceeeeeccCCCCCceee
Q psy23 96 SAKPLVKTIFEG-G--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 96 ~~~plv~~~l~G-~--n~ti~aYGqtgSGKT~Tm 126 (386)
+.-+-+|.+|.| + ...+..||++|||||.-+
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 356678888886 2 234568999999999865
No 349
>PRK00300 gmk guanylate kinase; Provisional
Probab=33.53 E-value=20 Score=32.17 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=13.3
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677899999999653
No 350
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=33.46 E-value=16 Score=40.54 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=13.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999765
No 351
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=22 Score=37.06 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=43.1
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHH-h----cCcCceeeeeccCCCCCceeec--cC-----C---CC-CCccccc
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTI-F----EGGMATCFAYGQTGSGKTHTMG--GD-----F---QG-KTQDCKK 139 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~-l----~G~n~ti~aYGqtgSGKT~Tm~--G~-----~---~~-~~~~~~~ 139 (386)
...++.+-+.+...+.+.+.+..|+...- + ......++-||+.|+|||+.-- +. + .+ ..-...-
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence 34445554444444444444444443222 1 2445579999999999998752 11 0 00 0111234
Q ss_pred chhhhhHHHHHHHhcC
Q psy23 140 GIYAMAAKDVFKLLKS 155 (386)
Q Consensus 140 Gli~r~~~~LF~~~~~ 155 (386)
|-.-..++.+|.....
T Consensus 318 Gesek~ir~~F~~A~~ 333 (494)
T COG0464 318 GESEKNIRELFEKARK 333 (494)
T ss_pred chHHHHHHHHHHHHHc
Confidence 6666778888887764
No 352
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=33.27 E-value=17 Score=37.23 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=15.1
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999875
No 353
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=33.24 E-value=25 Score=39.28 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=19.5
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..+++.+-++ ..++..|+||||||..+.
T Consensus 11 ~~i~~~l~~~--~~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 11 PELLTALKTA--PQVLLKAPTGAGKSTWLP 38 (812)
T ss_pred HHHHHHHHhC--CCEEEEcCCCCCHHHHHH
Confidence 3455555443 347889999999998763
No 354
>PRK10865 protein disaggregation chaperone; Provisional
Probab=33.24 E-value=24 Score=39.65 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56788899999999975
No 355
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=33.20 E-value=19 Score=26.75 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=11.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|.-.|..|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999997654
No 356
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=33.16 E-value=28 Score=31.91 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHhc-Cc--CceeeeeccCCCCCceee
Q psy23 100 LVKTIFE-GG--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~-G~--n~ti~aYGqtgSGKT~Tm 126 (386)
-++.++. |+ ...++-+|.+|+|||...
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4567775 43 556777999999998754
No 357
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=33.09 E-value=18 Score=30.75 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.0
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|.-.|++|||||.-
T Consensus 2 i~i~GpsGsGKstl 15 (137)
T cd00071 2 IVLSGPSGVGKSTL 15 (137)
T ss_pred EEEECCCCCCHHHH
Confidence 44579999999853
No 358
>PF11966 SSURE: Fibronectin-binding repeat; InterPro: IPR021021 Streptococcal surface repeat domain - SSURE - is a protein fragment found to bind to extracellular matrix protein fibronectin but not to collagen or submaxillary mucin in Streptococci. Anti-SSURE antibodies recognised the corresponding protein on the surface of streptococcal cells. The full-length proteins are thus fibronectin-binding surface adhesins []. The proteins are further characterised by having an N-terminal motif resembling [YF]SIRKxxxGxxS[VIA] IPR005877 from INTERPRO and a C-terminal LPXTG motif-containing region which is a characteristic of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall (see IPR019931 from INTERPRO).
Probab=33.07 E-value=72 Score=24.64 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=34.3
Q ss_pred eccCCCCCCCCCCCCccccCceeecCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHh----cCcCceeeeeccCCCC
Q psy23 46 FSLNSNLMPKTNNENSQYNNCRSMPLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIF----EGGMATCFAYGQTGSG 121 (386)
Q Consensus 46 ~~~n~~l~p~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l----~G~n~ti~aYGqtgSG 121 (386)
-+-||.|+|-+.....++ |.+|==...+.- ...+.|++.+- .-|.+||-.||. ..|
T Consensus 4 ~aknp~L~Pl~~l~kGkY---------------FYqV~L~Gnt~G----k~~q~LLDqlraNGt~tY~ATv~VYga-kdg 63 (81)
T PF11966_consen 4 TAKNPALLPLEGLTKGKY---------------FYQVDLNGNTAG----KQGQALLDQLRANGTHTYQATVKVYGA-KDG 63 (81)
T ss_pred ccCCCCCCCccccCCccE---------------EEEEecCCcccC----cchHHHHHHHHhCCceeeEEEEEEEec-cCC
Confidence 357999999888766654 222221111111 11344555443 578899999998 677
Q ss_pred Cc
Q psy23 122 KT 123 (386)
Q Consensus 122 KT 123 (386)
|-
T Consensus 64 K~ 65 (81)
T PF11966_consen 64 KP 65 (81)
T ss_pred Cc
Confidence 73
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=33.06 E-value=19 Score=31.95 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=19.4
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
-+...+.| -+++-.|++|.|||..+
T Consensus 28 ~l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 28 ELKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHHhcC--CEEEEECCCCCCHHHHH
Confidence 44566777 56777899999999865
No 360
>PRK13767 ATP-dependent helicase; Provisional
Probab=32.92 E-value=40 Score=38.08 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=18.6
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.|+ +...+||||||.+.
T Consensus 40 Ai~~il~g~nv--li~APTGSGKTlaa 64 (876)
T PRK13767 40 AIPLIHEGKNV--LISSPTGSGKTLAA 64 (876)
T ss_pred HHHHHHcCCCE--EEECCCCCcHHHHH
Confidence 34556788874 55779999999874
No 361
>PRK00279 adk adenylate kinase; Reviewed
Probab=32.85 E-value=18 Score=33.16 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.5
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|+.+|+.|||||..
T Consensus 3 I~v~G~pGsGKsT~ 16 (215)
T PRK00279 3 LILLGPPGAGKGTQ 16 (215)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999975
No 362
>KOG0742|consensus
Probab=32.84 E-value=20 Score=36.77 Aligned_cols=14 Identities=43% Similarity=0.774 Sum_probs=12.3
Q ss_pred eeeeeccCCCCCce
Q psy23 111 TCFAYGQTGSGKTH 124 (386)
Q Consensus 111 ti~aYGqtgSGKT~ 124 (386)
.|+-||+.|+|||-
T Consensus 386 NilfyGPPGTGKTm 399 (630)
T KOG0742|consen 386 NILFYGPPGTGKTM 399 (630)
T ss_pred heeeeCCCCCCchH
Confidence 47899999999983
No 363
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=32.67 E-value=17 Score=33.08 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=12.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|++|||||+.+
T Consensus 8 vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999653
No 364
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=32.52 E-value=15 Score=40.43 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=16.3
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
|.-.+..|.||||||+++
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677889999999999987
No 365
>PTZ00301 uridine kinase; Provisional
Probab=32.52 E-value=14 Score=34.25 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=10.5
Q ss_pred eeccCCCCCceee
Q psy23 114 AYGQTGSGKTHTM 126 (386)
Q Consensus 114 aYGqtgSGKT~Tm 126 (386)
--|++|||||+.-
T Consensus 8 IaG~SgSGKTTla 20 (210)
T PTZ00301 8 ISGASGSGKSSLS 20 (210)
T ss_pred EECCCcCCHHHHH
Confidence 3499999999853
No 366
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=32.45 E-value=17 Score=33.31 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=13.9
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..+.-.|++|||||..|
T Consensus 29 ~~~~i~G~NGsGKSTll 45 (213)
T cd03279 29 GLFLICGPTGAGKSTIL 45 (213)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35567899999999876
No 367
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=32.26 E-value=15 Score=35.69 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=11.4
Q ss_pred eeccCCCCCceee
Q psy23 114 AYGQTGSGKTHTM 126 (386)
Q Consensus 114 aYGqtgSGKT~Tm 126 (386)
-.|+.|+|||.+|
T Consensus 36 llG~NGAGKTTll 48 (293)
T COG1131 36 LLGPNGAGKTTLL 48 (293)
T ss_pred EECCCCCCHHHHH
Confidence 4599999999987
No 368
>PRK02496 adk adenylate kinase; Provisional
Probab=32.02 E-value=19 Score=31.95 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998854
No 369
>KOG0741|consensus
Probab=31.94 E-value=23 Score=37.61 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
-|+-||+.|+|||-.
T Consensus 258 GiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLI 272 (744)
T ss_pred eEEEECCCCCChhHH
Confidence 389999999999864
No 370
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=31.93 E-value=16 Score=33.33 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=14.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
++.-+|++|+|||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6778999999999876
No 371
>PRK13531 regulatory ATPase RavA; Provisional
Probab=31.77 E-value=27 Score=36.66 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=20.3
Q ss_pred hhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 96 ~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+++-++..++.|. .|+-+|++|+|||+..
T Consensus 28 vI~lll~aalag~--hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 28 AIRLCLLAALSGE--SVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHHccCC--CEEEECCCChhHHHHH
Confidence 3444555555554 4688999999999865
No 372
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=31.72 E-value=15 Score=40.21 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.8
Q ss_pred eeeeccCCCCCceeec
Q psy23 112 CFAYGQTGSGKTHTMG 127 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~ 127 (386)
++..|.||||||.+|.
T Consensus 188 ~li~GttGSGKS~~i~ 203 (732)
T PRK13700 188 FCLHGTVGAGKSEVIR 203 (732)
T ss_pred eEEeCCCCCCHHHHHH
Confidence 6789999999998764
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=31.58 E-value=29 Score=38.44 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.4
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
.++++-+|++|+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 357899999999999875
No 374
>PRK04296 thymidine kinase; Provisional
Probab=31.43 E-value=12 Score=33.67 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=14.4
Q ss_pred eeeeeccCCCCCceeecc
Q psy23 111 TCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~G 128 (386)
.++-+|+.|+|||..+.+
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 457789999999977654
No 375
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=31.30 E-value=19 Score=31.80 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999998753
No 376
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=31.27 E-value=12 Score=32.87 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=10.6
Q ss_pred eccCCCCCceee
Q psy23 115 YGQTGSGKTHTM 126 (386)
Q Consensus 115 YGqtgSGKT~Tm 126 (386)
.|.+|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 499999999976
No 377
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.10 E-value=33 Score=34.77 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=17.3
Q ss_pred HHHHh-cCcC-ceeeeeccCCCCCceee
Q psy23 101 VKTIF-EGGM-ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 101 v~~~l-~G~n-~ti~aYGqtgSGKT~Tm 126 (386)
+..++ .|.- .+++-||+.|+|||...
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 34444 3433 35778999999999654
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.04 E-value=17 Score=31.78 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=12.6
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
++..|.+|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999985
No 379
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=30.97 E-value=14 Score=29.86 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|.-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 466899999998754
No 380
>KOG0922|consensus
Probab=30.95 E-value=27 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.9
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
|..++..|.||||||.-+
T Consensus 66 nqvlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQI 83 (674)
T ss_pred CCEEEEEcCCCCCccccH
Confidence 677888999999999876
No 381
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=30.93 E-value=25 Score=36.94 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=28.2
Q ss_pred eeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 78 RCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 78 ~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.++.+++.+..-..+++.+ +. +...+..|+-+|.+||||++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i-----~~-~a~~~~pVlI~Ge~GtGK~~~ 226 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEI-----EV-VAASDLNVLILGETGVGKELV 226 (509)
T ss_pred cCCceeecCHHHHHHHHHH-----HH-HhCCCCcEEEECCCCccHHHH
Confidence 5666666554444444433 22 346688999999999999875
No 382
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=30.93 E-value=32 Score=34.45 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=23.4
Q ss_pred hhhHHHHHHhcCc---CceeeeeccCCCCCceee
Q psy23 96 SAKPLVKTIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 96 ~~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
+.-+-+|.+|.|. .....-||..|||||.-+
T Consensus 110 TG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred CCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 4667789999863 334568999999999854
No 383
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=30.74 E-value=30 Score=33.48 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=19.0
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+.+.+-+|.+ ++.=.+||+|||.+.+-
T Consensus 20 v~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 20 LKRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred HHHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 4445556654 56678999999988753
No 384
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=30.74 E-value=30 Score=33.48 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=19.0
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+.+.+-+|.+ ++.=.+||+|||.+.+-
T Consensus 20 v~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 20 LKRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred HHHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 4445556654 56678999999988753
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.68 E-value=18 Score=38.37 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=14.3
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..|...|++|+|||+|+.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 455566999999999973
No 386
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=30.59 E-value=27 Score=34.46 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.1
Q ss_pred CcCceeeeeccCCCCCcee
Q psy23 107 GGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~T 125 (386)
..+.-|+-+|.+||||++.
T Consensus 27 ~~~~pVlI~GE~GtGK~~l 45 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELI 45 (326)
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 4577889999999999875
No 387
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.53 E-value=20 Score=33.76 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.0
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
-.+..+|++|||||.-+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35678999999999765
No 388
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=30.41 E-value=32 Score=36.00 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=23.0
Q ss_pred hhHHHHHHhcC---cCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEG---GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G---~n~ti~aYGqtgSGKT~Tm 126 (386)
.-|-++.++.| ....++.+|.+|+|||.-.
T Consensus 16 GI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 16 GIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 44567788865 4577889999999999754
No 389
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=30.28 E-value=21 Score=32.33 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=12.1
Q ss_pred ceeeeeccCCCCCcee
Q psy23 110 ATCFAYGQTGSGKTHT 125 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~T 125 (386)
-+|+-.|++|||||.-
T Consensus 4 ~~vlL~Gps~SGKTaL 19 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTAL 19 (181)
T ss_dssp -EEEEE-STTSSHHHH
T ss_pred ceEEEEcCCCCCHHHH
Confidence 4688899999999864
No 390
>PRK14528 adenylate kinase; Provisional
Probab=30.25 E-value=21 Score=32.05 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|++|||||+..
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999998764
No 391
>PLN02200 adenylate kinase family protein
Probab=30.10 E-value=21 Score=33.51 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=22.1
Q ss_pred ceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHH
Q psy23 110 ATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFK 151 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~ 151 (386)
..|+..|.+|||||+-.-.- ....|+....+.+|++
T Consensus 44 ~ii~I~G~PGSGKsT~a~~L------a~~~g~~his~gdllR 79 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKI------VETFGFKHLSAGDLLR 79 (234)
T ss_pred EEEEEECCCCCCHHHHHHHH------HHHhCCeEEEccHHHH
Confidence 35788999999999863210 1123555555555654
No 392
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=29.96 E-value=34 Score=28.93 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.6
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-+|.-|+|||+-.
T Consensus 16 ~vi~L~GdLGaGKTtf~ 32 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFV 32 (123)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45888999999999865
No 393
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.87 E-value=36 Score=35.76 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.1
Q ss_pred HHHhcCcCc-eeeeeccCCCCCceee
Q psy23 102 KTIFEGGMA-TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 102 ~~~l~G~n~-ti~aYGqtgSGKT~Tm 126 (386)
+.+-.|.-. .++-||+.|+|||.+.
T Consensus 27 ~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 27 NAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHHHcCCCCceEEEECCCCccHHHHH
Confidence 333345444 7999999999999854
No 394
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.86 E-value=25 Score=37.03 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHhcCc-CceeeeeccCCCCCceee
Q psy23 103 TIFEGG-MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~-n~ti~aYGqtgSGKT~Tm 126 (386)
.+..|- ...++-+|+.|+|||.+.
T Consensus 36 ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 36 TILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHHcCCCCceEEEECCCCCCHHHHH
Confidence 344443 357899999999999876
No 395
>PRK11823 DNA repair protein RadA; Provisional
Probab=29.75 E-value=27 Score=36.15 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=24.0
Q ss_pred hhHHHHHHhcCc---CceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFEGG---MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm~ 127 (386)
.-+-+|.++.|. ...++-+|++|+|||..+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~l 98 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLL 98 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHH
Confidence 456678888753 5677899999999998663
No 396
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=29.67 E-value=21 Score=34.20 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||+.-
T Consensus 4 liil~G~pGSGKSTla 19 (300)
T PHA02530 4 IILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999998763
No 397
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=29.60 E-value=19 Score=40.82 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=11.4
Q ss_pred eccCCCCCceeecc
Q psy23 115 YGQTGSGKTHTMGG 128 (386)
Q Consensus 115 YGqtgSGKT~Tm~G 128 (386)
-=+||||||||+.+
T Consensus 65 ~M~TGtGKT~~~~~ 78 (986)
T PRK15483 65 KMETGTGKTYVYTR 78 (986)
T ss_pred EeCCCCCHHHHHHH
Confidence 34799999997766
No 398
>PRK01184 hypothetical protein; Provisional
Probab=29.52 E-value=21 Score=31.60 Aligned_cols=15 Identities=33% Similarity=0.301 Sum_probs=12.6
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999984
No 399
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=29.51 E-value=28 Score=30.71 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=20.7
Q ss_pred HHHHHhc-CcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFE-GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~-G~n~ti~aYGqtgSGKT~Tm 126 (386)
++..+.. .-...|+..|..|||||..+
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHH
Confidence 4555554 66778999999999999754
No 400
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.49 E-value=59 Score=32.40 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.6
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
+.-..|+..|-.|+|||+|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 34566788899999999997
No 401
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=29.48 E-value=16 Score=36.11 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.9
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
--+|++|||||..|
T Consensus 32 aLlGpSGaGKsTlL 45 (345)
T COG1118 32 ALLGPSGAGKSTLL 45 (345)
T ss_pred EEECCCCCcHHHHH
Confidence 45799999999876
No 402
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=29.47 E-value=24 Score=31.45 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=11.9
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
++.+|++|||||..
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 57799999999864
No 403
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=29.43 E-value=19 Score=40.43 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.5
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
|.-.+..|.||||||+++
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445788999999999998
No 404
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=29.38 E-value=18 Score=34.87 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=14.9
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
-.+..+|++|+|||.++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~ 93 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLA 93 (270)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467788999999999863
No 405
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=29.32 E-value=26 Score=33.34 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=14.2
Q ss_pred CceeeeeccCCCCCcee
Q psy23 109 MATCFAYGQTGSGKTHT 125 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~T 125 (386)
..+++.+|++|+|||.-
T Consensus 36 gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 36 YSVINITGVSDTGKSLM 52 (259)
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678899999999874
No 406
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=29.15 E-value=27 Score=35.23 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=23.5
Q ss_pred hhHHHHHHhcCc---CceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFEGG---MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm~ 127 (386)
.-+-+|.++.|. ...++-+|.+|+|||..+.
T Consensus 67 Gi~eLD~vLgGGi~~GslvLI~G~pG~GKStLll 100 (372)
T cd01121 67 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLL 100 (372)
T ss_pred CCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHH
Confidence 445677888653 4567899999999999764
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.04 E-value=21 Score=36.85 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++..|.+|+|||.|.
T Consensus 100 ~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEEECCCCCcHHHHH
Confidence 46788899999999995
No 408
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=29.04 E-value=17 Score=35.31 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.7
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.|+..|.+|||||..+-
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57788999999999873
No 409
>PRK05480 uridine/cytidine kinase; Provisional
Probab=29.02 E-value=21 Score=32.31 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=12.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.--|.+|||||+..
T Consensus 8 iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 8 IIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999764
No 410
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=29.01 E-value=21 Score=33.07 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
...-.|+.|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 3457799999999987
No 411
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=29.00 E-value=21 Score=33.47 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=12.8
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|..|||||+..
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999864
No 412
>KOG2035|consensus
Probab=28.92 E-value=52 Score=32.20 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=21.5
Q ss_pred HHhhhhHHHHHHhc-CcCceeeeeccCCCCCceee
Q psy23 93 FRFSAKPLVKTIFE-GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 93 f~~~~~plv~~~l~-G~n~ti~aYGqtgSGKT~Tm 126 (386)
|.+-..+.+.+... |----++.||++|+||-..+
T Consensus 17 ~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTri 51 (351)
T KOG2035|consen 17 YHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRI 51 (351)
T ss_pred cHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhH
Confidence 33344455545544 43345789999999997655
No 413
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=28.92 E-value=21 Score=31.83 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=12.1
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|..-|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999864
No 414
>KOG2170|consensus
Probab=28.90 E-value=31 Score=33.98 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=12.0
Q ss_pred eeee-ccCCCCCcee
Q psy23 112 CFAY-GQTGSGKTHT 125 (386)
Q Consensus 112 i~aY-GqtgSGKT~T 125 (386)
++++ |.||+||.|.
T Consensus 112 vLSfHG~tGTGKN~V 126 (344)
T KOG2170|consen 112 VLSFHGWTGTGKNYV 126 (344)
T ss_pred EEEecCCCCCchhHH
Confidence 6665 9999999996
No 415
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=28.83 E-value=27 Score=34.69 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.1
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
+.-|+-.|++|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 456899999999999764
No 416
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=28.65 E-value=22 Score=33.32 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=11.6
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
++-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 467899999999874
No 417
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=28.58 E-value=35 Score=37.00 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=21.1
Q ss_pred hHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
|.++++.+.. .+-+ +..+++-.+||+|||+.-
T Consensus 2 Q~~~~~~i~~----al~~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLT----SLRQ--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHH----HHhc--CCeEEEEcCCCCcHHHHH
Confidence 5666655433 2223 355788999999999654
No 418
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=28.54 E-value=23 Score=36.52 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
.-|+.+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999865
No 419
>KOG0736|consensus
Probab=28.40 E-value=26 Score=38.72 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=23.6
Q ss_pred ChHHHHHhhhhHHH--HHHhcCcC--ceeeeeccCCCCCce
Q psy23 88 TVPLDFRFSAKPLV--KTIFEGGM--ATCFAYGQTGSGKTH 124 (386)
Q Consensus 88 sq~~vf~~~~~plv--~~~l~G~n--~ti~aYGqtgSGKT~ 124 (386)
.-.+|-+.+--|+- +-+-.|.- +-|+-||+.|+|||-
T Consensus 680 vK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTL 720 (953)
T KOG0736|consen 680 VKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTL 720 (953)
T ss_pred HHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHH
Confidence 34455555555543 22334544 679999999999985
No 420
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=28.38 E-value=24 Score=38.88 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.1
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34788999999999864
No 421
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=28.37 E-value=26 Score=32.73 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=15.0
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...++.+|++|+|||...
T Consensus 24 g~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 24 GSLILIEGDESTGKSILS 41 (230)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 347789999999999873
No 422
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=28.33 E-value=20 Score=34.04 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+...|.+|||||..+
T Consensus 16 ~viIG~sGSGKT~li 30 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLI 30 (241)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999865
No 423
>KOG0987|consensus
Probab=28.31 E-value=51 Score=35.06 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=25.1
Q ss_pred CChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 87 NTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 87 ~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..|..+|+. ++..+.+..-..+| ||..|+||||-.
T Consensus 120 ~eqk~v~d~----~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 120 PEQKRVYDA----ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred HHHHHHHHH----HHHHHhccccceee-eccCCccceeeH
Confidence 456666662 44566666667777 999999999965
No 424
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=28.29 E-value=25 Score=34.58 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=12.6
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
++..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567899999999864
No 425
>KOG1534|consensus
Probab=28.29 E-value=31 Score=32.36 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
+.|..|+.||||++-
T Consensus 5 a~lV~GpAgSGKSTy 19 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTY 19 (273)
T ss_pred eEEEEccCCCCcchH
Confidence 578999999999864
No 426
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=28.21 E-value=25 Score=31.28 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.++..|.+|||||.-
T Consensus 3 ~ili~G~~~sGKS~~ 17 (170)
T PRK05800 3 LILVTGGARSGKSRF 17 (170)
T ss_pred EEEEECCCCccHHHH
Confidence 478899999999864
No 427
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=28.18 E-value=25 Score=36.58 Aligned_cols=14 Identities=50% Similarity=0.752 Sum_probs=12.4
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
+.-|.||+|||-||
T Consensus 23 LIaGATGTGKTvTL 36 (502)
T PF05872_consen 23 LIAGATGTGKTVTL 36 (502)
T ss_pred eeeccCCCCceehH
Confidence 45699999999998
No 428
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=28.12 E-value=17 Score=32.14 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=18.3
Q ss_pred HHHHHHhcCcC---ceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGM---ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n---~ti~aYGqtgSGKT~Tm~ 127 (386)
|-++.++.|+- .-.+-+|++|+|||+.+.
T Consensus 19 ~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~ 50 (193)
T PF13481_consen 19 PPLDWLIDGLLPRGELTLIAGPPGSGKTTLAL 50 (193)
T ss_dssp ----EEETTEE-TTSEEEEEECSTSSHHHHHH
T ss_pred CCcceeECCcccCCeEEEEEeCCCCCHHHHHH
Confidence 34455555553 246788999999999863
No 429
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=28.05 E-value=26 Score=34.49 Aligned_cols=16 Identities=38% Similarity=0.331 Sum_probs=13.6
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-+|+|+||||..-
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999864
No 430
>KOG0924|consensus
Probab=27.94 E-value=32 Score=37.57 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.9
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
+-|-+|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 56888999999999999877
No 431
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=27.94 E-value=32 Score=34.21 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=18.3
Q ss_pred HHHHHh-cCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIF-EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l-~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++-.++ .|. .-++-+|..|+|||...
T Consensus 20 l~~~~~~~~~-~~vLl~G~pG~gKT~la 46 (334)
T PRK13407 20 MVLTAIDPGI-GGVLVFGDRGTGKSTAV 46 (334)
T ss_pred HHHHHhccCC-CcEEEEcCCCCCHHHHH
Confidence 443444 453 34889999999999875
No 432
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=27.89 E-value=33 Score=30.47 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=18.5
Q ss_pred HHHhcC-cCceeeeeccCCCCCceee
Q psy23 102 KTIFEG-GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 102 ~~~l~G-~n~ti~aYGqtgSGKT~Tm 126 (386)
+.+-.| ...+++-||+.|+|||...
T Consensus 6 ~~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 6 RALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 334455 4467888999999999765
No 433
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=27.88 E-value=44 Score=32.87 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred hhhHHHHHHhcCc---CceeeeeccCCCCCceeec
Q psy23 96 SAKPLVKTIFEGG---MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 96 ~~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm~ 127 (386)
+.-+-+|.++.|. ...+..||.+|+|||..+.
T Consensus 80 tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~ 114 (316)
T TIGR02239 80 TGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCH 114 (316)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHH
Confidence 3556688877654 3446799999999998753
No 434
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=27.79 E-value=29 Score=38.09 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=18.9
Q ss_pred hcCcCceeeeeccCCCCCceeecc
Q psy23 105 FEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 105 l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+.-..+-++..|..|||||.||..
T Consensus 13 v~~~~g~~lV~AgaGSGKT~~l~~ 36 (726)
T TIGR01073 13 VKTTEGPLLIMAGAGSGKTRVLTH 36 (726)
T ss_pred HhCCCCCEEEEeCCCCCHHHHHHH
Confidence 333456788999999999999954
No 435
>PRK05541 adenylylsulfate kinase; Provisional
Probab=27.78 E-value=24 Score=30.95 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|.+|||||...
T Consensus 9 ~I~i~G~~GsGKst~a 24 (176)
T PRK05541 9 VIWITGLAGSGKTTIA 24 (176)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999998753
No 436
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=27.71 E-value=37 Score=31.45 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=14.8
Q ss_pred HHhcCcCceeeeeccCCCCCceee
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
-+..|. .-|+.+|+.|+|||...
T Consensus 17 iAAaG~-h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 17 IAAAGG-HHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHHCC---EEEES-CCCTHHHHH
T ss_pred HHHcCC-CCeEEECCCCCCHHHHH
Confidence 333453 47899999999998764
No 437
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=27.69 E-value=26 Score=34.47 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=12.6
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|+||||||.-
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 467889999999864
No 438
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=27.61 E-value=18 Score=32.97 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=12.9
Q ss_pred eeeeccCCCCCceeec
Q psy23 112 CFAYGQTGSGKTHTMG 127 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~ 127 (386)
|..-|..|||||+.+-
T Consensus 1 ~vv~G~pGsGKSt~i~ 16 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIK 16 (234)
T ss_pred CEEEcCCCCCHHHHHH
Confidence 3567999999999764
No 439
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=27.59 E-value=30 Score=38.07 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.7
Q ss_pred CcCceeeeeccCCCCCceeecc
Q psy23 107 GGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
-..+.++..+..|||||.||..
T Consensus 20 ~~~g~~lV~AgaGSGKT~vl~~ 41 (721)
T PRK11773 20 APLGNMLVLAGAGSGKTRVLVH 41 (721)
T ss_pred CCCCCEEEEecCCCCHHHHHHH
Confidence 3356788888999999999954
No 440
>PRK13949 shikimate kinase; Provisional
Probab=27.48 E-value=25 Score=31.12 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|+.|||||...
T Consensus 3 ~I~liG~~GsGKstl~ 18 (169)
T PRK13949 3 RIFLVGYMGAGKTTLG 18 (169)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 441
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.47 E-value=32 Score=36.86 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=18.4
Q ss_pred HHHHHhcC-cCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEG-GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G-~n~ti~aYGqtgSGKT~Tm 126 (386)
|...+-.| ....++-||+.|+|||.+.
T Consensus 28 L~~~i~~~~~~hayLf~Gp~G~GKtt~A 55 (576)
T PRK14965 28 LQNAIDTGRVAHAFLFTGARGVGKTSTA 55 (576)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33333445 3455678999999999865
No 442
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=27.41 E-value=20 Score=36.23 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=0.0
Q ss_pred eeeeccCCCCCceeeccC
Q psy23 112 CFAYGQTGSGKTHTMGGD 129 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~G~ 129 (386)
+++||..|||||+++..-
T Consensus 5 ~v~~GGrGS~KS~~~a~~ 22 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFIAQK 22 (387)
T ss_dssp ------------------
T ss_pred EEEECCCCchHHHHHHHH
Confidence 568999999999998663
No 443
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=27.38 E-value=20 Score=31.40 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=11.4
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
...|.+|||||..+
T Consensus 3 ~i~G~~gsGKTtl~ 16 (155)
T TIGR00176 3 QIVGPKNSGKTTLI 16 (155)
T ss_pred EEECCCCCCHHHHH
Confidence 44699999999865
No 444
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=27.31 E-value=21 Score=29.80 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|...|.+|+|||..+
T Consensus 5 ~i~~~G~~g~GKttl~ 20 (168)
T cd04163 5 FVAIVGRPNVGKSTLL 20 (168)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567799999999865
No 445
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=27.28 E-value=21 Score=38.24 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
-++.+|.||||||..|
T Consensus 178 h~li~G~tGsGKs~~i 193 (566)
T TIGR02759 178 HILIHGTTGSGKSVAI 193 (566)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 4688999999999643
No 446
>KOG1970|consensus
Probab=27.17 E-value=27 Score=37.07 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=16.0
Q ss_pred cCcCce-eeeeccCCCCCceee
Q psy23 106 EGGMAT-CFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~t-i~aYGqtgSGKT~Tm 126 (386)
.+.-.- ++..||+|+|||.|+
T Consensus 106 ~~l~~~iLLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 106 PKLGSRILLLTGPSGCGKSTTV 127 (634)
T ss_pred cCCCceEEEEeCCCCCCchhHH
Confidence 454443 467799999999998
No 447
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.14 E-value=41 Score=35.28 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=18.8
Q ss_pred HHHHHhcCc-CceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGG-MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~-n~ti~aYGqtgSGKT~Tm 126 (386)
|...+-.|- ...++-||+.|+|||.+.
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333344444 345899999999999775
No 448
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.12 E-value=31 Score=36.78 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=13.8
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-||+.|+|||...
T Consensus 39 ha~Lf~Gp~GvGKTTlA 55 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLG 55 (546)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677999999999754
No 449
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=27.10 E-value=39 Score=38.00 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhcCcC------ceeeeeccCCCCCcee
Q psy23 95 FSAKPLVKTIFEGGM------ATCFAYGQTGSGKTHT 125 (386)
Q Consensus 95 ~~~~plv~~~l~G~n------~ti~aYGqtgSGKT~T 125 (386)
..+...|.....|.+ ++++-.|++|+|||+.
T Consensus 576 ~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~l 612 (852)
T TIGR03345 576 EAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTET 612 (852)
T ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHH
No 450
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=26.97 E-value=37 Score=37.65 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+++-+..-....++-||++|+|||+..-|
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 334333333344556799999999998865
No 451
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=26.81 E-value=23 Score=33.67 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=16.7
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
-....|+..|.+|+|||.++
T Consensus 29 ~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 45567889999999999875
No 452
>PTZ00110 helicase; Provisional
Probab=26.78 E-value=31 Score=36.62 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=19.2
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..++.|.+. ++..+||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 35567788865 67789999999863
No 453
>PRK04182 cytidylate kinase; Provisional
Probab=26.77 E-value=25 Score=30.56 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||...
T Consensus 2 ~I~i~G~~GsGKstia 17 (180)
T PRK04182 2 IITISGPPGSGKTTVA 17 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999853
No 454
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=26.77 E-value=26 Score=31.24 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+...|.+|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 455
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=26.72 E-value=23 Score=35.68 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.7
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.++++|..|||||+++.
T Consensus 3 ~~i~~GgrgSGKS~~~~ 19 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIA 19 (396)
T ss_pred eEEEeCCCCcccHHHHH
Confidence 36789999999999875
No 456
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=26.71 E-value=24 Score=39.33 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=14.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
-.+..|+||||||+.|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567999999999988
No 457
>PRK13947 shikimate kinase; Provisional
Probab=26.70 E-value=26 Score=30.40 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+.-
T Consensus 3 ~I~l~G~~GsGKst~a 18 (171)
T PRK13947 3 NIVLIGFMGTGKTTVG 18 (171)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788899999998753
No 458
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=26.57 E-value=36 Score=36.75 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=26.7
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+.|+.+.+.+.. +..+.+.+ +.+. ..+..|+-+|.+||||++.
T Consensus 321 ~~~~~~l~g~s~~----~~~~~~~~-~~~a-~~~~pvli~Ge~GtGK~~~ 364 (638)
T PRK11388 321 SHTFDHMPQDSPQ----MRRLIHFG-RQAA-KSSFPVLLCGEEGVGKALL 364 (638)
T ss_pred cccccceEECCHH----HHHHHHHH-HHHh-CcCCCEEEECCCCcCHHHH
Confidence 3456766654333 33333322 2222 4577799999999999874
No 459
>PRK06851 hypothetical protein; Provisional
Probab=26.49 E-value=30 Score=34.92 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=21.9
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++.++++.+-.++.-|++|+|||..|
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 556777888888889999999998765
No 460
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.43 E-value=21 Score=31.97 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 24 ~~l~G~nG~GKSTLl 38 (176)
T cd03238 24 VVVTGVSGSGKSTLV 38 (176)
T ss_pred EEEECCCCCCHHHHH
Confidence 356799999999876
No 461
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=26.42 E-value=32 Score=37.70 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.2
Q ss_pred cCceeeeeccCCCCCceeecc
Q psy23 108 GMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..+.++..+..|||||+||..
T Consensus 16 ~~g~~lV~AgaGSGKT~~L~~ 36 (715)
T TIGR01075 16 PPGNLLVLAGAGSGKTRVLTH 36 (715)
T ss_pred CCCCEEEEecCCCCHHHHHHH
Confidence 345678888999999999965
No 462
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=26.30 E-value=20 Score=39.92 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.6
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
+-.+.+|+||||||..+
T Consensus 427 g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 427 GMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34678999999999987
No 463
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=26.30 E-value=29 Score=33.85 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=12.1
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|+..|+||||||.-
T Consensus 2 i~i~G~t~~GKs~l 15 (287)
T TIGR00174 2 IFIMGPTAVGKSQL 15 (287)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999874
No 464
>PRK13946 shikimate kinase; Provisional
Probab=26.26 E-value=29 Score=30.97 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.0
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
.-.|+..|..|||||+.-
T Consensus 10 ~~~I~l~G~~GsGKsti~ 27 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVG 27 (184)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346899999999999864
No 465
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=26.21 E-value=22 Score=29.57 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|+.|||||.-+
T Consensus 13 ~~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLL 28 (137)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEccCCCccccce
Confidence 4566799999999865
No 466
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=26.21 E-value=31 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=20.7
Q ss_pred HHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 93 f~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
|...+.+..+......+. +.-.|.||||||.+|.
T Consensus 126 wr~~~~~~~~~~~~~~~~-ivl~G~TGsGKT~iL~ 159 (345)
T PRK11784 126 YRRFVIDTLEEAPAQFPL-VVLGGNTGSGKTELLQ 159 (345)
T ss_pred HHHhhHHHHhhhcccCce-EecCCCCcccHHHHHH
Confidence 334444444443334433 4577899999998874
No 467
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=26.11 E-value=38 Score=36.78 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.1
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
+.-++++|+||||||..+.
T Consensus 175 ~~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred CceEEEEecCCCCCceEEE
Confidence 4458999999999999774
No 468
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=26.06 E-value=48 Score=33.09 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=24.1
Q ss_pred hhhhHHHHHHhcCc---CceeeeeccCCCCCceeec
Q psy23 95 FSAKPLVKTIFEGG---MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 95 ~~~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm~ 127 (386)
.+.-+-+|.++.|. ...+..||.+|+|||..+.
T Consensus 106 ~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~ 141 (342)
T PLN03186 106 TTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCH 141 (342)
T ss_pred CCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHH
Confidence 34566788888764 3445799999999998653
No 469
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=25.93 E-value=46 Score=36.71 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.5
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
++++-+|++|+|||+..
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46788999999999864
No 470
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=25.88 E-value=26 Score=31.09 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|...|..|||||+..
T Consensus 2 i~itG~~gsGKst~~ 16 (179)
T cd02022 2 IGLTGGIGSGKSTVA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999764
No 471
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=25.85 E-value=1.7e+02 Score=29.58 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=34.4
Q ss_pred HHHHHhcCcCc---eeeeeccCCCCCc---------------eeeccCCCCCCcccccchhhhhHHHHHH
Q psy23 100 LVKTIFEGGMA---TCFAYGQTGSGKT---------------HTMGGDFQGKTQDCKKGIYAMAAKDVFK 151 (386)
Q Consensus 100 lv~~~l~G~n~---ti~aYGqtgSGKT---------------~Tm~G~~~~~~~~~~~Gli~r~~~~LF~ 151 (386)
.+.++-+|+.. .++-.|+.|+||| ||+.|+|-. ++--+|||.-++..|.
T Consensus 76 ~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~---e~PL~L~P~~~r~~~~ 142 (358)
T PF08298_consen 76 YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMH---EEPLHLFPKELRREFE 142 (358)
T ss_pred HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccc---cChhhhCCHhHHHHHH
Confidence 44555566543 4677899999998 677776532 3335899998888775
No 472
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=25.80 E-value=29 Score=40.62 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.0
Q ss_pred HHhcCcCceeeeeccCCCCCceee
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+++ |-.++..|+||||||.-+
T Consensus 84 ~ai~~-~~VviI~GeTGSGKTTql 106 (1294)
T PRK11131 84 EAIRD-HQVVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHh-CCeEEEECCCCCCHHHHH
Confidence 33444 456788999999999865
No 473
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=25.75 E-value=43 Score=33.20 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=24.5
Q ss_pred hhhhHHHHHHhc--CcC--ceeeeeccCCCCCceee
Q psy23 95 FSAKPLVKTIFE--GGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 95 ~~~~plv~~~l~--G~n--~ti~aYGqtgSGKT~Tm 126 (386)
.+..+-+|.+|. |+. ..+..||++|||||...
T Consensus 37 ~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLa 72 (321)
T TIGR02012 37 STGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLA 72 (321)
T ss_pred cCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 446678889886 554 35679999999999864
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=25.67 E-value=33 Score=30.33 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.3
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+..|++|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 35888999999999865
No 475
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=25.65 E-value=35 Score=38.24 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.4
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
|..++..|+||||||..+
T Consensus 17 ~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 17 HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 557889999999999875
No 476
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=25.41 E-value=53 Score=37.35 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=20.1
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+.++.++.-.+...-++..|+||||||.+.
T Consensus 460 I~~I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 460 IEEIKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHHHHhhhcccCcCCEEEECCCCccHHHHH
Confidence 334444444444456789999999999764
No 477
>PTZ00088 adenylate kinase 1; Provisional
Probab=25.33 E-value=28 Score=32.58 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=12.3
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|+..|+.|||||+-
T Consensus 9 Ivl~G~PGsGK~T~ 22 (229)
T PTZ00088 9 IVLFGAPGVGKGTF 22 (229)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999764
No 478
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.30 E-value=26 Score=32.67 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+...|++|+|||.-+
T Consensus 33 ~vv~lGpSGcGKTTLL 48 (259)
T COG4525 33 LVVVLGPSGCGKTTLL 48 (259)
T ss_pred EEEEEcCCCccHHHHH
Confidence 3678899999999865
No 479
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=25.29 E-value=25 Score=39.58 Aligned_cols=18 Identities=33% Similarity=0.815 Sum_probs=15.5
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
++-.+..|+||||||+.+
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 455688999999999987
No 480
>PRK11054 helD DNA helicase IV; Provisional
Probab=25.16 E-value=27 Score=38.30 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.7
Q ss_pred ceeeeeccCCCCCceeecc
Q psy23 110 ATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~G 128 (386)
..++..|..|||||.||.+
T Consensus 210 ~~~lV~agaGSGKT~vl~~ 228 (684)
T PRK11054 210 DSLLVLAGAGSGKTSVLVA 228 (684)
T ss_pred CCeEEEEeCCCCHHHHHHH
Confidence 3467788899999999976
No 481
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=25.10 E-value=40 Score=32.89 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|---|++|||||+++
T Consensus 65 IGIaG~~GSGKSTla 79 (290)
T TIGR00554 65 ISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEECCCCCCHHHHH
Confidence 345599999999986
No 482
>KOG0354|consensus
Probab=25.10 E-value=45 Score=36.68 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=19.8
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+++-+| |.|+-| .=+||+|||+.-
T Consensus 68 ~eivq~AL-gkNtii--~lPTG~GKTfIA 93 (746)
T KOG0354|consen 68 EELVQPAL-GKNTII--ALPTGSGKTFIA 93 (746)
T ss_pred HHHhHHhh-cCCeEE--EeecCCCccchH
Confidence 44778888 888744 459999999863
No 483
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=25.08 E-value=23 Score=29.62 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|...|.+|+|||..+
T Consensus 2 i~l~G~~g~GKTtL~ 16 (170)
T cd01876 2 IAFAGRSNVGKSSLI 16 (170)
T ss_pred EEEEcCCCCCHHHHH
Confidence 456899999999865
No 484
>KOG0743|consensus
Probab=24.98 E-value=29 Score=35.89 Aligned_cols=15 Identities=33% Similarity=0.758 Sum_probs=12.7
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
-+-||+.|+|||.-+
T Consensus 238 YLLYGPPGTGKSS~I 252 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFI 252 (457)
T ss_pred ceeeCCCCCCHHHHH
Confidence 388999999998754
No 485
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=24.93 E-value=23 Score=32.38 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.4
Q ss_pred CceeeeeccCCCCCceeecc
Q psy23 109 MATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+.|..||.+|.|||+..+|
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g 41 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFG 41 (191)
T ss_pred CCeEEEECCCCCChHHHHHH
Confidence 36789999999999999765
No 486
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=24.82 E-value=25 Score=38.01 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
..+..|..|||||+|+
T Consensus 169 ~~vItGgpGTGKTt~v 184 (615)
T PRK10875 169 ISVISGGPGTGKTTTV 184 (615)
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4566788899999997
No 487
>PLN02165 adenylate isopentenyltransferase
Probab=24.80 E-value=30 Score=34.49 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=13.7
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
-.|+-.|+||||||...
T Consensus 44 ~iivIiGPTGSGKStLA 60 (334)
T PLN02165 44 KVVVIMGATGSGKSRLS 60 (334)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 35677899999999764
No 488
>PRK09401 reverse gyrase; Reviewed
Probab=24.65 E-value=46 Score=38.86 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.6
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+..++.|.|.. +..+||||||..
T Consensus 87 ~~i~~il~g~dv~--i~ApTGsGKT~f 111 (1176)
T PRK09401 87 TWAKRLLLGESFA--IIAPTGVGKTTF 111 (1176)
T ss_pred HHHHHHHCCCcEE--EEcCCCCCHHHH
Confidence 4566778897664 456999999953
No 489
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=24.63 E-value=31 Score=30.00 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|.+|||||+.-
T Consensus 4 ~i~~~G~~GsGKst~~ 19 (171)
T PRK03731 4 PLFLVGARGCGKTTVG 19 (171)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999864
No 490
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=24.60 E-value=32 Score=31.27 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
..+-+|++|||||-.+
T Consensus 26 ~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4567999999999655
No 491
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=24.60 E-value=45 Score=30.72 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=17.8
Q ss_pred HHHhcCcCc--eeeeeccCCCCCceee
Q psy23 102 KTIFEGGMA--TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 102 ~~~l~G~n~--ti~aYGqtgSGKT~Tm 126 (386)
+.++.|+-- .++-.|++|+|||..+
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~~ 30 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAFA 30 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 455556653 4566799999999764
No 492
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=24.58 E-value=48 Score=38.97 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHhcCcCceeeeeccCCCCCceee
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+++ |..++..|.||||||.-+
T Consensus 77 ~~l~~-~~vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 77 EAIAE-NQVVIIAGETGSGKTTQL 99 (1283)
T ss_pred HHHHh-CceEEEeCCCCCCcHHHH
Confidence 33344 557889999999999865
No 493
>PRK00625 shikimate kinase; Provisional
Probab=24.45 E-value=29 Score=30.97 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+.-
T Consensus 2 ~I~LiG~pGsGKTT~~ 17 (173)
T PRK00625 2 QIFLCGLPTVGKTSFG 17 (173)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999853
No 494
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=24.43 E-value=36 Score=33.94 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.3
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
+-.+|..|+.|+||||--
T Consensus 143 ~di~fGiGpAGTGKTyLa 160 (348)
T COG1702 143 HDIVFGIGPAGTGKTYLA 160 (348)
T ss_pred cCeeeeecccccCChhhh
Confidence 456899999999999974
No 495
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=24.40 E-value=25 Score=39.42 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=16.2
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
|.-.+..|++|+|||+.+
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 677789999999999988
No 496
>PRK07667 uridine kinase; Provisional
Probab=24.31 E-value=29 Score=31.24 Aligned_cols=19 Identities=26% Similarity=0.041 Sum_probs=14.0
Q ss_pred CcCceeeeeccCCCCCcee
Q psy23 107 GGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~T 125 (386)
|--.-|.-.|.+|||||+.
T Consensus 15 ~~~~iIgI~G~~gsGKStl 33 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTF 33 (193)
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 4444556669999999985
No 497
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=24.15 E-value=32 Score=28.71 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|+.|+|||.-+
T Consensus 2 i~i~G~~~~GKTsli 16 (160)
T cd00876 2 VVVLGAGGVGKSAIT 16 (160)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999754
No 498
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=24.15 E-value=28 Score=31.36 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=10.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
.+-.|..|||||+.+
T Consensus 3 ~~~~G~pGsGKS~~a 17 (193)
T PF05707_consen 3 YLITGKPGSGKSYYA 17 (193)
T ss_dssp EEEE--TTSSHHHHH
T ss_pred EEEEcCCCCcHhHHH
Confidence 356799999999874
No 499
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=23.99 E-value=26 Score=31.82 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-+|++|||||..+
T Consensus 24 ~~~i~G~nGsGKStll 39 (197)
T cd03278 24 LTAIVGPNGSGKSNII 39 (197)
T ss_pred cEEEECCCCCCHHHHH
Confidence 3457899999999877
No 500
>KOG0651|consensus
Probab=23.98 E-value=34 Score=33.98 Aligned_cols=83 Identities=22% Similarity=0.178 Sum_probs=50.4
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHh-c--CcC--ceeeeeccCCCCCceee------cc-CC----CCCCcccc
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIF-E--GGM--ATCFAYGQTGSGKTHTM------GG-DF----QGKTQDCK 138 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l-~--G~n--~ti~aYGqtgSGKT~Tm------~G-~~----~~~~~~~~ 138 (386)
+.+.|+.+-+...--.++-+.+.-||++..+ . |.. --++-||+.|+|||+-. +| ++ .+...+..
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 4567777666544445555666677775554 2 333 23688999999999843 12 11 11111234
Q ss_pred cchhhhhHHHHHHHhcCCC
Q psy23 139 KGIYAMAAKDVFKLLKSPK 157 (386)
Q Consensus 139 ~Gli~r~~~~LF~~~~~~~ 157 (386)
-|=-.|.+++.|+...++.
T Consensus 207 iGEsaRlIRemf~yA~~~~ 225 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVI 225 (388)
T ss_pred cccHHHHHHHHHHHHhhhC
Confidence 4556788899998887654
Done!