Query psy23
Match_columns 386
No_of_seqs 226 out of 1373
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:10:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy23.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/23hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 2.2E-77 7.7E-82 589.6 24.3 271 73-352 54-348 (350)
2 2heh_A KIF2C protein; kinesin, 100.0 2E-77 6.7E-82 595.4 20.8 269 74-342 100-385 (387)
3 2y65_A Kinesin, kinesin heavy 100.0 1.6E-76 5.5E-81 586.5 24.6 280 73-358 49-352 (365)
4 1goj_A Kinesin, kinesin heavy 100.0 2.4E-76 8.1E-81 583.7 25.7 282 73-359 45-350 (355)
5 1v8k_A Kinesin-like protein KI 100.0 5.5E-77 1.9E-81 595.6 20.4 272 74-345 120-408 (410)
6 3bfn_A Kinesin-like protein KI 100.0 1.7E-76 5.7E-81 588.9 21.8 313 31-354 12-362 (388)
7 1t5c_A CENP-E protein, centrom 100.0 6E-76 2E-80 579.6 25.4 272 71-354 40-343 (349)
8 3b6u_A Kinesin-like protein KI 100.0 4.6E-76 1.6E-80 583.8 23.9 275 74-355 67-369 (372)
9 1x88_A Kinesin-like protein KI 100.0 1.3E-75 4.5E-80 579.5 22.7 269 74-347 54-358 (359)
10 2wbe_C Bipolar kinesin KRP-130 100.0 1.2E-75 4.2E-80 582.1 22.5 273 73-349 65-371 (373)
11 2zfi_A Kinesin-like protein KI 100.0 1.8E-75 6.3E-80 579.8 23.5 270 73-348 46-363 (366)
12 3cob_A Kinesin heavy chain-lik 100.0 4.6E-75 1.6E-79 576.5 25.1 266 74-349 46-337 (369)
13 4a14_A Kinesin, kinesin-like p 100.0 3.1E-75 1.1E-79 574.4 21.6 297 36-337 7-344 (344)
14 1bg2_A Kinesin; motor protein, 100.0 5.4E-75 1.8E-79 568.1 22.0 261 73-339 42-325 (325)
15 1ry6_A Internal kinesin; kines 100.0 5E-75 1.7E-79 574.8 20.8 278 74-354 49-346 (360)
16 3lre_A Kinesin-like protein KI 100.0 1.1E-74 3.9E-79 572.0 21.5 258 73-339 70-355 (355)
17 2owm_A Nckin3-434, related to 100.0 2.6E-74 8.8E-79 583.3 24.4 268 73-350 94-424 (443)
18 2h58_A Kinesin-like protein KI 100.0 8.4E-74 2.9E-78 560.7 26.2 259 73-341 46-330 (330)
19 2rep_A Kinesin-like protein KI 100.0 1.2E-73 4.3E-78 567.5 25.9 262 74-339 82-376 (376)
20 1f9v_A Kinesin-like protein KA 100.0 1.1E-73 3.7E-78 563.5 20.8 260 74-344 51-346 (347)
21 3t0q_A AGR253WP; kinesin, alph 100.0 4.3E-73 1.5E-77 559.9 22.9 258 75-343 53-348 (349)
22 3dc4_A Kinesin-like protein NO 100.0 2.4E-73 8.2E-78 559.7 20.9 305 29-344 11-340 (344)
23 3gbj_A KIF13B protein; kinesin 100.0 2.8E-73 9.4E-78 561.9 20.5 258 73-338 49-349 (354)
24 3nwn_A Kinesin-like protein KI 100.0 3.4E-73 1.2E-77 561.6 19.9 256 75-339 72-359 (359)
25 4etp_A Kinesin-like protein KA 100.0 7.1E-72 2.4E-76 560.5 27.7 259 75-344 108-402 (403)
26 2nr8_A Kinesin-like protein KI 100.0 1.9E-72 6.6E-77 556.0 20.0 257 74-339 70-358 (358)
27 3u06_A Protein claret segregat 100.0 4E-72 1.4E-76 562.6 20.3 261 74-347 105-390 (412)
28 4h1g_A Maltose binding protein 100.0 8.1E-68 2.8E-72 567.9 22.1 257 74-341 429-713 (715)
29 2kin_B Kinesin; motor protein, 99.9 2.6E-29 8.8E-34 203.3 1.1 93 265-358 2-95 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 1.9E-26 6.5E-31 192.5 3.7 89 268-357 1-90 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 5E-23 1.7E-27 193.4 6.1 258 43-346 27-296 (298)
32 3ec2_A DNA replication protein 93.4 0.012 3.9E-07 51.0 -0.6 50 76-126 6-55 (180)
33 2w58_A DNAI, primosome compone 91.9 0.032 1.1E-06 48.9 0.1 49 77-126 22-71 (202)
34 2qgz_A Helicase loader, putati 90.7 0.051 1.7E-06 51.7 0.2 50 77-127 121-170 (308)
35 1jbk_A CLPB protein; beta barr 88.5 0.17 5.9E-06 42.7 1.9 30 97-126 31-60 (195)
36 2r62_A Cell division protease 86.4 0.25 8.4E-06 45.1 1.8 50 76-126 7-61 (268)
37 2p65_A Hypothetical protein PF 86.4 0.2 6.9E-06 42.2 1.1 30 97-126 31-60 (187)
38 3t15_A Ribulose bisphosphate c 86.3 0.23 7.8E-06 46.6 1.5 38 89-126 12-53 (293)
39 2bjv_A PSP operon transcriptio 85.6 0.28 9.6E-06 44.8 1.8 44 77-126 3-46 (265)
40 2kjq_A DNAA-related protein; s 85.3 0.33 1.1E-05 40.9 1.9 18 110-127 37-54 (149)
41 3te6_A Regulatory protein SIR3 84.7 0.27 9.1E-06 47.2 1.2 27 100-126 36-62 (318)
42 1l8q_A Chromosomal replication 82.8 0.36 1.2E-05 45.5 1.2 49 76-127 7-55 (324)
43 1ixz_A ATP-dependent metallopr 82.5 0.2 7E-06 45.4 -0.7 51 75-126 11-66 (254)
44 3h4m_A Proteasome-activating n 82.3 0.27 9.3E-06 45.2 0.1 51 76-126 13-68 (285)
45 3cf0_A Transitional endoplasmi 82.1 0.28 9.6E-06 46.1 0.1 50 77-126 12-66 (301)
46 2chg_A Replication factor C sm 80.3 0.63 2.2E-05 40.0 1.8 21 106-126 35-55 (226)
47 3bos_A Putative DNA replicatio 79.7 0.71 2.4E-05 40.6 1.9 20 107-126 50-69 (242)
48 1qde_A EIF4A, translation init 79.1 0.66 2.3E-05 40.8 1.5 24 100-125 44-67 (224)
49 3b9p_A CG5977-PA, isoform A; A 78.5 0.38 1.3E-05 44.6 -0.3 51 76-126 17-71 (297)
50 1vec_A ATP-dependent RNA helic 78.5 0.89 3E-05 39.3 2.1 25 100-126 33-57 (206)
51 2gxq_A Heat resistant RNA depe 78.0 0.77 2.6E-05 39.7 1.6 24 100-125 31-54 (207)
52 1d2n_A N-ethylmaleimide-sensit 77.9 1 3.4E-05 41.2 2.4 21 106-126 61-81 (272)
53 1g8p_A Magnesium-chelatase 38 77.9 0.64 2.2E-05 43.8 1.1 44 75-126 19-62 (350)
54 1p9r_A General secretion pathw 77.8 0.74 2.5E-05 45.7 1.6 29 99-127 157-185 (418)
55 1iy2_A ATP-dependent metallopr 77.6 0.36 1.2E-05 44.5 -0.8 15 112-126 76-90 (278)
56 3d8b_A Fidgetin-like protein 1 77.2 0.4 1.4E-05 46.3 -0.6 51 76-126 80-134 (357)
57 4etp_B Spindle POLE BODY-assoc 77.2 7.7 0.00026 36.9 8.2 97 65-184 83-183 (333)
58 4b4t_M 26S protease regulatory 76.6 0.58 2E-05 46.8 0.4 50 77-126 178-232 (434)
59 2x8a_A Nuclear valosin-contain 76.1 0.4 1.4E-05 44.6 -0.9 50 77-126 7-61 (274)
60 3jvv_A Twitching mobility prot 76.0 0.8 2.7E-05 44.5 1.2 29 99-127 113-141 (356)
61 1xwi_A SKD1 protein; VPS4B, AA 75.7 0.43 1.5E-05 45.4 -0.8 49 78-126 10-62 (322)
62 3dkp_A Probable ATP-dependent 75.6 0.97 3.3E-05 40.5 1.6 25 99-125 58-82 (245)
63 3bor_A Human initiation factor 74.6 0.64 2.2E-05 41.7 0.1 25 100-126 60-84 (237)
64 2z4s_A Chromosomal replication 74.1 0.98 3.3E-05 44.9 1.3 48 75-126 100-147 (440)
65 1lv7_A FTSH; alpha/beta domain 73.7 0.47 1.6E-05 43.0 -1.1 18 109-126 45-62 (257)
66 3uk6_A RUVB-like 2; hexameric 73.5 1.3 4.3E-05 42.2 1.9 45 77-126 41-87 (368)
67 3syl_A Protein CBBX; photosynt 73.4 1.1 3.6E-05 41.6 1.3 20 107-126 65-84 (309)
68 2pl3_A Probable ATP-dependent 73.4 1.2 4.1E-05 39.6 1.6 24 100-125 55-78 (236)
69 1gvn_B Zeta; postsegregational 72.5 2.6 8.8E-05 39.3 3.7 35 92-126 11-50 (287)
70 1t6n_A Probable ATP-dependent 72.4 1.3 4.5E-05 38.8 1.6 25 100-126 44-68 (220)
71 3n70_A Transport activator; si 72.0 1.4 4.7E-05 36.4 1.5 20 107-126 22-41 (145)
72 3co5_A Putative two-component 71.8 1.8 6.1E-05 35.6 2.2 19 108-126 26-44 (143)
73 1u0j_A DNA replication protein 71.5 1.7 5.8E-05 40.5 2.2 30 97-126 89-121 (267)
74 3llm_A ATP-dependent RNA helic 70.8 1.2 4.2E-05 39.8 1.0 26 99-126 68-93 (235)
75 2eyu_A Twitching motility prot 70.5 1.3 4.3E-05 41.0 1.1 18 109-126 25-42 (261)
76 3iuy_A Probable ATP-dependent 70.5 1.4 4.9E-05 38.8 1.4 25 100-126 50-74 (228)
77 3ly5_A ATP-dependent RNA helic 70.4 1.5 5.3E-05 39.9 1.6 25 99-125 83-107 (262)
78 1wrb_A DJVLGB; RNA helicase, D 70.3 1.5 5.1E-05 39.4 1.5 25 100-126 53-77 (253)
79 1tue_A Replication protein E1; 70.1 1 3.5E-05 40.6 0.3 28 100-127 47-76 (212)
80 3fmo_B ATP-dependent RNA helic 70.1 1.5 5.1E-05 41.1 1.5 28 99-126 121-148 (300)
81 3eiq_A Eukaryotic initiation f 70.0 1.8 6.1E-05 41.5 2.1 26 99-126 69-94 (414)
82 2qz4_A Paraplegin; AAA+, SPG7, 70.0 1.8 6.1E-05 38.8 1.9 19 108-126 38-56 (262)
83 1sxj_C Activator 1 40 kDa subu 70.0 1.6 5.6E-05 41.3 1.8 27 100-126 37-63 (340)
84 2v1u_A Cell division control p 69.6 0.81 2.8E-05 43.4 -0.5 20 107-126 42-61 (387)
85 4b4t_K 26S protease regulatory 69.3 0.85 2.9E-05 45.5 -0.4 78 78-155 170-263 (428)
86 3fe2_A Probable ATP-dependent 68.8 1.6 5.4E-05 39.1 1.3 25 100-126 59-83 (242)
87 3b6e_A Interferon-induced heli 68.6 0.85 2.9E-05 39.5 -0.5 26 100-127 41-66 (216)
88 4b4t_L 26S protease subunit RP 68.5 0.91 3.1E-05 45.4 -0.4 50 77-126 178-232 (437)
89 1njg_A DNA polymerase III subu 68.2 1.9 6.6E-05 37.3 1.7 17 110-126 46-62 (250)
90 2oxc_A Probable ATP-dependent 68.2 1.8 6.1E-05 38.4 1.5 24 100-125 54-77 (230)
91 3ber_A Probable ATP-dependent 67.8 1.8 6.3E-05 39.1 1.6 25 100-126 73-97 (249)
92 1fnn_A CDC6P, cell division co 67.8 2.3 7.9E-05 40.4 2.3 27 100-126 32-61 (389)
93 2qby_B CDC6 homolog 3, cell di 67.8 2.2 7.6E-05 40.5 2.2 27 100-126 35-62 (384)
94 3vfd_A Spastin; ATPase, microt 66.9 1.2 4E-05 43.3 0.0 52 75-126 110-165 (389)
95 1ofh_A ATP-dependent HSL prote 66.8 2 6.7E-05 39.5 1.6 18 109-126 50-67 (310)
96 1sxj_D Activator 1 41 kDa subu 65.9 1.7 5.8E-05 40.8 0.9 27 100-126 49-75 (353)
97 3eie_A Vacuolar protein sortin 65.4 1.1 3.9E-05 42.2 -0.4 50 77-126 15-68 (322)
98 3fht_A ATP-dependent RNA helic 65.4 2.2 7.6E-05 40.7 1.7 28 99-126 54-81 (412)
99 1iqp_A RFCS; clamp loader, ext 65.4 2.3 7.8E-05 39.3 1.7 21 106-126 43-63 (327)
100 1q0u_A Bstdead; DEAD protein, 64.9 1.3 4.5E-05 38.9 -0.1 24 100-125 34-57 (219)
101 2c9o_A RUVB-like 1; hexameric 64.5 3 0.0001 41.4 2.5 45 77-126 34-80 (456)
102 3hu3_A Transitional endoplasmi 64.4 1.9 6.5E-05 43.6 1.0 20 107-126 236-255 (489)
103 4b4t_H 26S protease regulatory 64.3 1.3 4.5E-05 44.5 -0.2 50 77-126 206-260 (467)
104 2qp9_X Vacuolar protein sortin 64.3 1.4 4.8E-05 42.4 0.0 51 76-126 47-101 (355)
105 3pey_A ATP-dependent RNA helic 64.1 2.4 8.3E-05 40.0 1.7 28 99-126 34-61 (395)
106 4fcw_A Chaperone protein CLPB; 64.0 1.9 6.5E-05 39.8 0.9 17 110-126 48-64 (311)
107 2ewv_A Twitching motility prot 63.4 1.7 5.8E-05 42.3 0.4 28 99-126 126-153 (372)
108 4b4t_J 26S protease regulatory 63.3 1.9 6.5E-05 42.6 0.7 50 77-126 145-199 (405)
109 3fmp_B ATP-dependent RNA helic 63.2 2.9 0.0001 41.3 2.1 27 99-125 121-147 (479)
110 2zan_A Vacuolar protein sortin 62.7 1 3.5E-05 44.8 -1.3 51 76-126 130-184 (444)
111 2fz4_A DNA repair protein RAD2 62.5 2.3 7.8E-05 38.3 1.1 25 101-127 102-126 (237)
112 1i84_S Smooth muscle myosin he 62.1 5.7 0.00019 44.6 4.4 21 106-126 166-186 (1184)
113 2p5t_B PEZT; postsegregational 62.1 4.2 0.00014 36.8 2.8 34 92-125 10-48 (253)
114 2oap_1 GSPE-2, type II secreti 62.0 2.7 9.4E-05 42.7 1.7 20 106-127 259-278 (511)
115 1s2m_A Putative ATP-dependent 60.6 2.8 9.4E-05 40.0 1.4 25 100-126 51-75 (400)
116 3h1t_A Type I site-specific re 60.0 3 0.0001 42.6 1.6 26 101-127 191-216 (590)
117 2chq_A Replication factor C sm 59.6 2.1 7.1E-05 39.4 0.3 21 106-126 35-55 (319)
118 4b4t_I 26S protease regulatory 59.5 2.2 7.6E-05 42.5 0.5 49 78-126 180-233 (437)
119 4b3f_X DNA-binding protein smu 59.3 2.8 9.5E-05 43.7 1.2 28 100-128 197-224 (646)
120 1w5s_A Origin recognition comp 59.3 1.5 5.3E-05 42.0 -0.7 25 102-126 40-69 (412)
121 2z0m_A 337AA long hypothetical 59.2 3.2 0.00011 38.2 1.5 25 100-126 24-48 (337)
122 1n0w_A DNA repair protein RAD5 58.8 3 0.0001 36.8 1.2 30 97-126 9-41 (243)
123 2qby_A CDC6 homolog 1, cell di 58.5 2.1 7.2E-05 40.4 0.1 20 107-126 43-62 (386)
124 2j0s_A ATP-dependent RNA helic 58.4 4 0.00014 39.1 2.1 25 100-126 67-91 (410)
125 3fho_A ATP-dependent RNA helic 57.8 3.5 0.00012 41.5 1.6 26 100-125 149-174 (508)
126 3pxg_A Negative regulator of g 57.7 5.8 0.0002 39.6 3.2 31 98-128 190-220 (468)
127 2r44_A Uncharacterized protein 56.7 2.3 8E-05 39.8 0.1 17 110-126 47-63 (331)
128 3c8u_A Fructokinase; YP_612366 56.7 4.2 0.00014 35.4 1.8 30 97-126 8-39 (208)
129 1hqc_A RUVB; extended AAA-ATPa 56.3 6.8 0.00023 36.2 3.3 20 107-126 36-55 (324)
130 3oiy_A Reverse gyrase helicase 55.9 4.1 0.00014 39.3 1.7 24 100-125 29-52 (414)
131 1sxj_B Activator 1 37 kDa subu 55.2 3.8 0.00013 37.7 1.3 21 106-126 39-59 (323)
132 3b85_A Phosphate starvation-in 55.0 4.3 0.00015 36.0 1.5 26 99-126 14-39 (208)
133 3pvs_A Replication-associated 55.0 5 0.00017 39.9 2.2 29 98-126 39-67 (447)
134 3upu_A ATP-dependent DNA helic 54.6 4.8 0.00016 39.9 2.0 36 86-126 27-62 (459)
135 4gp7_A Metallophosphoesterase; 54.2 2.6 8.8E-05 35.8 -0.1 17 111-127 11-27 (171)
136 1ojl_A Transcriptional regulat 53.9 5.2 0.00018 37.4 2.0 20 107-126 23-42 (304)
137 2ce7_A Cell division protein F 53.6 2.3 7.9E-05 42.9 -0.6 17 110-126 50-66 (476)
138 1rz3_A Hypothetical protein rb 53.0 5.6 0.00019 34.5 1.9 29 98-126 8-39 (201)
139 1w36_D RECD, exodeoxyribonucle 52.9 4.2 0.00014 42.2 1.2 19 109-127 164-182 (608)
140 1in4_A RUVB, holliday junction 52.8 6.1 0.00021 37.3 2.3 17 110-126 52-68 (334)
141 3pfi_A Holliday junction ATP-d 52.2 8.2 0.00028 36.0 3.1 20 107-126 53-72 (338)
142 2cvh_A DNA repair and recombin 52.1 4.6 0.00016 34.9 1.2 29 98-126 6-37 (220)
143 2i4i_A ATP-dependent RNA helic 51.9 6.1 0.00021 37.7 2.2 25 100-126 45-69 (417)
144 2w0m_A SSO2452; RECA, SSPF, un 51.8 4 0.00014 35.5 0.7 29 98-126 9-40 (235)
145 1jr3_A DNA polymerase III subu 51.6 5.3 0.00018 37.6 1.7 18 109-126 38-55 (373)
146 3u61_B DNA polymerase accessor 51.6 5.6 0.00019 37.0 1.8 17 110-126 49-65 (324)
147 2v1x_A ATP-dependent DNA helic 51.5 7.9 0.00027 39.9 3.1 25 99-125 51-75 (591)
148 2gk6_A Regulator of nonsense t 51.3 4.7 0.00016 41.8 1.3 18 110-127 196-213 (624)
149 4a74_A DNA repair and recombin 50.8 4.9 0.00017 35.0 1.2 29 98-126 11-42 (231)
150 1sxj_E Activator 1 40 kDa subu 50.3 3.4 0.00012 38.8 0.1 15 112-126 39-53 (354)
151 4a2p_A RIG-I, retinoic acid in 50.2 5.5 0.00019 39.7 1.6 25 100-126 15-39 (556)
152 1rif_A DAR protein, DNA helica 50.2 3.8 0.00013 37.5 0.4 25 101-127 122-146 (282)
153 3i5x_A ATP-dependent RNA helic 50.1 7 0.00024 39.4 2.4 27 99-125 101-127 (563)
154 3b9q_A Chloroplast SRP recepto 50.1 8.7 0.0003 36.0 2.9 16 111-126 102-117 (302)
155 3lw7_A Adenylate kinase relate 49.7 3.9 0.00013 33.6 0.3 16 111-126 3-18 (179)
156 3pxi_A Negative regulator of g 49.4 9.1 0.00031 40.5 3.2 30 98-127 190-219 (758)
157 1hv8_A Putative ATP-dependent 49.0 5.6 0.00019 37.0 1.4 26 100-126 36-61 (367)
158 1um8_A ATP-dependent CLP prote 48.8 3.8 0.00013 39.3 0.1 18 109-126 72-89 (376)
159 3e70_C DPA, signal recognition 48.7 7.4 0.00025 37.1 2.2 16 111-126 131-146 (328)
160 1fuu_A Yeast initiation factor 48.6 3.5 0.00012 39.0 -0.2 25 100-126 51-75 (394)
161 2db3_A ATP-dependent RNA helic 48.4 7.2 0.00025 38.1 2.1 24 100-125 86-109 (434)
162 1xti_A Probable ATP-dependent 48.1 7.2 0.00025 36.8 2.0 25 100-126 38-62 (391)
163 3tbk_A RIG-I helicase domain; 48.1 6.2 0.00021 39.1 1.6 25 100-126 12-36 (555)
164 3lfu_A DNA helicase II; SF1 he 47.5 5.7 0.0002 40.8 1.2 26 103-128 16-41 (647)
165 2qnr_A Septin-2, protein NEDD5 47.4 3.7 0.00013 38.5 -0.2 24 103-126 12-35 (301)
166 3tr0_A Guanylate kinase, GMP k 47.1 3.9 0.00013 35.1 -0.1 16 111-126 9-24 (205)
167 2fwr_A DNA repair protein RAD2 47.0 5.7 0.0002 39.0 1.1 25 101-127 102-126 (472)
168 3a00_A Guanylate kinase, GMP k 46.5 3.9 0.00013 34.9 -0.2 15 112-126 4-18 (186)
169 1mhn_A SurviVal motor neuron p 46.2 22 0.00076 24.7 3.9 47 2-50 12-58 (59)
170 3hws_A ATP-dependent CLP prote 46.1 4.9 0.00017 38.3 0.4 18 109-126 51-68 (363)
171 2dr3_A UPF0273 protein PH0284; 46.0 5.2 0.00018 35.2 0.6 28 99-126 10-40 (247)
172 1kgd_A CASK, peripheral plasma 45.7 4.1 0.00014 34.7 -0.2 16 111-126 7-22 (180)
173 1r6b_X CLPA protein; AAA+, N-t 45.2 7.7 0.00026 41.0 1.8 30 98-127 196-225 (758)
174 2qag_C Septin-7; cell cycle, c 45.2 4 0.00014 40.4 -0.4 24 103-126 25-48 (418)
175 3tau_A Guanylate kinase, GMP k 45.2 4.3 0.00015 35.5 -0.1 16 111-126 10-25 (208)
176 3sop_A Neuronal-specific septi 45.1 4.1 0.00014 37.6 -0.3 19 108-126 1-19 (270)
177 1sxj_A Activator 1 95 kDa subu 45.1 8.1 0.00028 38.9 1.9 18 109-126 77-94 (516)
178 1ly1_A Polynucleotide kinase; 44.8 5.1 0.00017 33.4 0.3 16 111-126 4-19 (181)
179 1zp6_A Hypothetical protein AT 44.5 4.4 0.00015 34.3 -0.2 16 111-126 11-26 (191)
180 1qhx_A CPT, protein (chloramph 44.4 5.4 0.00019 33.3 0.4 16 111-126 5-20 (178)
181 4ag6_A VIRB4 ATPase, type IV s 44.2 4.5 0.00016 39.0 -0.1 18 109-126 35-52 (392)
182 1lvg_A Guanylate kinase, GMP k 44.0 4.3 0.00015 35.3 -0.3 16 111-126 6-21 (198)
183 1ye8_A Protein THEP1, hypothet 43.9 4.3 0.00015 34.9 -0.3 15 112-126 3-17 (178)
184 3cf2_A TER ATPase, transitiona 43.6 29 0.00099 37.3 6.0 50 77-126 201-255 (806)
185 2og2_A Putative signal recogni 43.4 13 0.00044 35.9 3.0 16 111-126 159-174 (359)
186 1rj9_A FTSY, signal recognitio 43.3 5.5 0.00019 37.5 0.3 17 110-126 103-119 (304)
187 1wp9_A ATP-dependent RNA helic 43.2 7 0.00024 37.5 1.0 25 100-127 17-41 (494)
188 3nbx_X ATPase RAVA; AAA+ ATPas 42.9 9.8 0.00034 38.5 2.1 25 100-126 34-58 (500)
189 3trf_A Shikimate kinase, SK; a 42.8 5.9 0.0002 33.4 0.4 16 111-126 7-22 (185)
190 3iij_A Coilin-interacting nucl 42.7 5.7 0.00019 33.4 0.3 16 111-126 13-28 (180)
191 1qvr_A CLPB protein; coiled co 42.7 8.3 0.00028 41.5 1.6 32 97-128 179-210 (854)
192 2xzl_A ATP-dependent helicase 42.6 7.2 0.00025 41.9 1.1 25 101-127 369-393 (802)
193 3sqw_A ATP-dependent RNA helic 42.6 11 0.00037 38.4 2.4 26 100-125 51-76 (579)
194 4gl2_A Interferon-induced heli 42.4 9.9 0.00034 39.4 2.1 25 100-126 15-39 (699)
195 2ykg_A Probable ATP-dependent 42.3 10 0.00034 39.3 2.1 24 100-125 21-44 (696)
196 2b8t_A Thymidine kinase; deoxy 42.2 4.1 0.00014 36.7 -0.7 19 110-128 13-31 (223)
197 3e1s_A Exodeoxyribonuclease V, 42.1 7.6 0.00026 40.0 1.2 26 100-127 197-222 (574)
198 2wjy_A Regulator of nonsense t 42.0 8 0.00027 41.5 1.3 26 101-128 365-390 (800)
199 1e9r_A Conjugal transfer prote 41.9 5 0.00017 39.3 -0.3 18 109-126 53-70 (437)
200 2orw_A Thymidine kinase; TMTK, 41.7 4.1 0.00014 35.2 -0.8 18 111-128 5-22 (184)
201 3lnc_A Guanylate kinase, GMP k 41.4 6.9 0.00024 34.5 0.6 15 112-126 30-44 (231)
202 2ehv_A Hypothetical protein PH 40.9 5.7 0.0002 35.0 -0.0 17 111-127 32-48 (251)
203 2jlq_A Serine protease subunit 40.8 5.5 0.00019 39.4 -0.2 25 100-125 11-35 (451)
204 3kl4_A SRP54, signal recogniti 40.7 16 0.00053 36.3 3.1 18 110-127 98-115 (433)
205 2d9t_A Tudor domain-containing 40.6 51 0.0017 24.3 5.3 54 3-58 19-72 (78)
206 1odf_A YGR205W, hypothetical 3 40.3 12 0.00039 35.0 2.0 17 110-126 32-48 (290)
207 2j41_A Guanylate kinase; GMP, 40.3 5.7 0.0002 34.0 -0.1 16 111-126 8-23 (207)
208 2qen_A Walker-type ATPase; unk 40.1 9.8 0.00033 35.1 1.5 17 110-126 32-48 (350)
209 1znw_A Guanylate kinase, GMP k 40.0 5.7 0.0002 34.5 -0.2 15 112-126 23-37 (207)
210 2bdt_A BH3686; alpha-beta prot 40.0 5.7 0.0002 33.7 -0.2 16 111-126 4-19 (189)
211 1kag_A SKI, shikimate kinase I 39.8 6.9 0.00023 32.5 0.3 16 111-126 6-21 (173)
212 1c4o_A DNA nucleotide excision 39.4 12 0.00041 39.1 2.2 40 84-128 8-47 (664)
213 1lkx_A Myosin IE heavy chain; 39.2 12 0.00043 39.4 2.3 21 106-126 91-111 (697)
214 2gza_A Type IV secretion syste 39.2 5.7 0.0002 38.2 -0.3 16 111-126 177-192 (361)
215 1uaa_A REP helicase, protein ( 39.2 8.8 0.0003 39.9 1.1 22 107-128 13-34 (673)
216 2r8r_A Sensor protein; KDPD, P 39.0 5.7 0.0002 36.0 -0.3 20 109-128 6-25 (228)
217 2pt7_A CAG-ALFA; ATPase, prote 39.0 6.1 0.00021 37.6 -0.2 16 111-126 173-188 (330)
218 1kht_A Adenylate kinase; phosp 38.8 7.3 0.00025 32.7 0.3 16 111-126 5-20 (192)
219 3pxi_A Negative regulator of g 38.7 11 0.00038 39.8 1.9 16 111-126 523-538 (758)
220 1gm5_A RECG; helicase, replica 38.7 13 0.00046 39.7 2.4 21 106-126 386-406 (780)
221 3kb2_A SPBC2 prophage-derived 38.3 7.3 0.00025 32.1 0.3 16 111-126 3-18 (173)
222 3vaa_A Shikimate kinase, SK; s 37.6 8.1 0.00028 33.2 0.5 16 111-126 27-42 (199)
223 1z6g_A Guanylate kinase; struc 37.2 6.4 0.00022 34.7 -0.3 15 112-126 26-40 (218)
224 1w9i_A Myosin II heavy chain; 37.1 14 0.00048 39.5 2.3 21 106-126 169-189 (770)
225 1ypw_A Transitional endoplasmi 37.0 8.7 0.0003 41.2 0.7 51 76-126 200-255 (806)
226 2px0_A Flagellar biosynthesis 36.9 6.7 0.00023 36.7 -0.2 18 110-127 106-123 (296)
227 2ze6_A Isopentenyl transferase 36.7 8 0.00027 35.0 0.3 15 111-125 3-17 (253)
228 2oca_A DAR protein, ATP-depend 36.6 9.7 0.00033 37.8 0.9 25 101-127 122-146 (510)
229 2v26_A Myosin VI; calmodulin-b 36.6 14 0.00049 39.5 2.2 21 106-126 137-157 (784)
230 1xx6_A Thymidine kinase; NESG, 36.4 5.7 0.00019 34.8 -0.8 18 111-128 10-27 (191)
231 2i3b_A HCR-ntpase, human cance 36.3 6.8 0.00023 34.1 -0.3 16 111-126 3-18 (189)
232 3kta_A Chromosome segregation 36.2 7.4 0.00025 32.7 -0.0 16 111-126 28-43 (182)
233 2rhm_A Putative kinase; P-loop 36.1 8.1 0.00028 32.5 0.2 17 110-126 6-22 (193)
234 2dhr_A FTSH; AAA+ protein, hex 36.0 6.9 0.00024 39.6 -0.3 16 111-126 66-81 (499)
235 2qor_A Guanylate kinase; phosp 35.8 8.6 0.00029 33.2 0.3 16 111-126 14-29 (204)
236 1r6b_X CLPA protein; AAA+, N-t 35.6 14 0.00048 38.9 2.0 17 110-126 489-505 (758)
237 1qvr_A CLPB protein; coiled co 35.1 16 0.00056 39.2 2.5 17 110-126 589-605 (854)
238 4a4z_A Antiviral helicase SKI2 35.1 16 0.00056 40.1 2.5 24 100-125 47-70 (997)
239 2vli_A Antibiotic resistance p 34.7 11 0.00037 31.5 0.7 17 110-126 6-22 (183)
240 1y63_A LMAJ004144AAA protein; 34.5 9.1 0.00031 32.5 0.3 16 111-126 12-27 (184)
241 1w7j_A Myosin VA; motor protei 34.5 16 0.00056 39.1 2.2 21 106-126 153-173 (795)
242 4a2q_A RIG-I, retinoic acid in 34.5 13 0.00045 39.4 1.6 25 100-126 256-280 (797)
243 3cm0_A Adenylate kinase; ATP-b 34.4 9.4 0.00032 32.0 0.3 16 111-126 6-21 (186)
244 1g8x_A Myosin II heavy chain f 34.3 16 0.00054 40.3 2.2 21 106-126 169-189 (1010)
245 1kk8_A Myosin heavy chain, str 34.3 15 0.00052 39.6 2.0 21 106-126 166-186 (837)
246 1tev_A UMP-CMP kinase; ploop, 34.2 9.3 0.00032 32.1 0.3 16 111-126 5-20 (196)
247 3dm5_A SRP54, signal recogniti 34.1 22 0.00075 35.4 3.0 19 109-127 100-118 (443)
248 2v3c_C SRP54, signal recogniti 34.1 29 0.00099 34.3 3.9 17 111-127 101-117 (432)
249 4db1_A Myosin-7; S1DC, cardiac 33.9 17 0.00057 38.9 2.2 21 106-126 168-188 (783)
250 2ycu_A Non muscle myosin 2C, a 33.8 17 0.00058 40.0 2.3 21 106-126 143-163 (995)
251 3uie_A Adenylyl-sulfate kinase 33.7 14 0.00047 31.8 1.3 18 109-126 25-42 (200)
252 2yhs_A FTSY, cell division pro 33.6 13 0.00045 37.6 1.3 16 111-126 295-310 (503)
253 1nks_A Adenylate kinase; therm 33.5 9.7 0.00033 31.9 0.3 16 111-126 3-18 (194)
254 1j8m_F SRP54, signal recogniti 33.5 24 0.0008 32.9 3.0 17 111-127 100-116 (297)
255 2fna_A Conserved hypothetical 33.5 13 0.00045 34.3 1.2 17 110-126 31-47 (357)
256 1e6c_A Shikimate kinase; phosp 33.5 9.7 0.00033 31.5 0.3 16 111-126 4-19 (173)
257 1gku_B Reverse gyrase, TOP-RG; 33.4 18 0.00061 40.0 2.4 24 99-124 63-86 (1054)
258 1knq_A Gluconate kinase; ALFA/ 33.1 11 0.00037 31.4 0.5 16 111-126 10-25 (175)
259 1moz_A ARL1, ADP-ribosylation 32.9 11 0.00037 31.2 0.4 27 100-126 8-35 (183)
260 1vma_A Cell division protein F 32.9 8.7 0.0003 36.2 -0.2 16 111-126 106-121 (306)
261 2v6i_A RNA helicase; membrane, 32.8 15 0.0005 36.0 1.5 16 111-126 4-19 (431)
262 2equ_A PHD finger protein 20-l 32.8 35 0.0012 25.1 3.2 45 2-51 18-62 (74)
263 3t61_A Gluconokinase; PSI-biol 32.6 10 0.00036 32.4 0.3 17 110-126 19-35 (202)
264 4a2w_A RIG-I, retinoic acid in 32.4 15 0.00051 40.0 1.6 25 100-126 256-280 (936)
265 1uf9_A TT1252 protein; P-loop, 32.2 12 0.00042 31.6 0.8 20 107-126 6-25 (203)
266 4a4f_A SurviVal of motor neuro 32.1 51 0.0017 23.2 4.0 44 2-47 17-60 (64)
267 1via_A Shikimate kinase; struc 32.0 11 0.00037 31.5 0.3 16 111-126 6-21 (175)
268 1svm_A Large T antigen; AAA+ f 31.9 18 0.0006 35.2 1.9 17 110-126 170-186 (377)
269 3t5d_A Septin-7; GTP-binding p 31.9 8.9 0.0003 35.0 -0.3 21 106-126 5-25 (274)
270 2dfs_A Myosin-5A; myosin-V, in 31.9 19 0.00064 40.1 2.2 21 106-126 153-173 (1080)
271 3asz_A Uridine kinase; cytidin 31.8 9.1 0.00031 33.0 -0.2 15 112-126 9-23 (211)
272 2iyv_A Shikimate kinase, SK; t 31.7 11 0.00037 31.7 0.3 15 111-125 4-18 (184)
273 1yks_A Genome polyprotein [con 31.7 13 0.00045 36.5 0.9 20 105-126 6-25 (440)
274 1pjr_A PCRA; DNA repair, DNA r 31.6 13 0.00046 39.1 1.0 26 103-128 18-43 (724)
275 1a5t_A Delta prime, HOLB; zinc 31.4 19 0.00066 33.7 2.0 27 100-126 14-41 (334)
276 4anj_A Unconventional myosin-V 31.3 19 0.00066 39.8 2.2 21 106-126 141-161 (1052)
277 2r2a_A Uncharacterized protein 31.2 11 0.00038 33.0 0.3 16 111-126 7-22 (199)
278 2bbw_A Adenylate kinase 4, AK4 31.1 9.7 0.00033 33.9 -0.2 17 110-126 28-44 (246)
279 4eun_A Thermoresistant glucoki 31.0 9.9 0.00034 32.7 -0.1 16 111-126 31-46 (200)
280 2qag_A Septin-2, protein NEDD5 31.0 11 0.00037 36.2 0.2 24 103-126 31-54 (361)
281 2bwj_A Adenylate kinase 5; pho 31.0 11 0.00038 31.8 0.2 16 111-126 14-29 (199)
282 2pt5_A Shikimate kinase, SK; a 30.8 12 0.0004 30.8 0.3 16 111-126 2-17 (168)
283 1v5w_A DMC1, meiotic recombina 30.8 19 0.00065 34.1 1.9 31 97-127 107-140 (343)
284 3tif_A Uncharacterized ABC tra 30.5 10 0.00034 34.1 -0.2 15 112-126 34-48 (235)
285 1htw_A HI0065; nucleotide-bind 30.4 10 0.00034 32.0 -0.2 16 111-126 35-50 (158)
286 1cr0_A DNA primase/helicase; R 30.2 14 0.00048 33.8 0.8 28 99-126 23-52 (296)
287 1s96_A Guanylate kinase, GMP k 30.0 11 0.00036 33.6 -0.1 16 111-126 18-33 (219)
288 2i1q_A DNA repair and recombin 30.0 19 0.00065 33.5 1.7 30 97-126 83-115 (322)
289 1oyw_A RECQ helicase, ATP-depe 29.9 11 0.00038 38.0 0.0 25 99-125 32-56 (523)
290 3k1j_A LON protease, ATP-depen 29.9 18 0.00061 37.2 1.6 27 98-126 51-77 (604)
291 2iut_A DNA translocase FTSK; n 29.8 10 0.00035 39.1 -0.3 17 110-126 215-231 (574)
292 2zts_A Putative uncharacterize 29.7 11 0.00038 33.0 -0.0 28 99-126 17-47 (251)
293 1qf9_A UMP/CMP kinase, protein 29.6 12 0.00041 31.3 0.2 16 111-126 8-23 (194)
294 2z43_A DNA repair and recombin 29.5 19 0.00067 33.7 1.7 30 97-126 92-124 (324)
295 3fb4_A Adenylate kinase; psych 29.5 12 0.00042 32.2 0.3 15 112-126 3-17 (216)
296 2z83_A Helicase/nucleoside tri 29.4 19 0.00065 35.5 1.7 15 111-125 23-37 (459)
297 1c9k_A COBU, adenosylcobinamid 29.3 13 0.00046 32.2 0.5 14 112-125 2-15 (180)
298 1ukz_A Uridylate kinase; trans 29.1 13 0.00043 31.8 0.3 16 111-126 17-32 (203)
299 3m6a_A ATP-dependent protease 29.1 11 0.00038 38.3 -0.2 17 110-126 109-125 (543)
300 1zd8_A GTP:AMP phosphotransfer 29.0 13 0.00043 32.7 0.2 16 111-126 9-24 (227)
301 2ga8_A Hypothetical 39.9 kDa p 28.9 26 0.00089 33.9 2.5 21 106-126 21-41 (359)
302 2c95_A Adenylate kinase 1; tra 28.9 13 0.00043 31.4 0.2 16 111-126 11-26 (196)
303 3rc3_A ATP-dependent RNA helic 28.8 13 0.00044 39.1 0.3 21 104-126 152-172 (677)
304 1f2t_A RAD50 ABC-ATPase; DNA d 28.6 16 0.00055 30.1 0.8 16 111-126 25-40 (149)
305 3a4m_A L-seryl-tRNA(SEC) kinas 28.4 13 0.00045 33.6 0.3 17 110-126 5-21 (260)
306 1aky_A Adenylate kinase; ATP:A 28.3 13 0.00046 32.3 0.3 16 111-126 6-21 (220)
307 2gno_A DNA polymerase III, gam 28.3 17 0.00058 34.0 1.0 29 98-126 7-35 (305)
308 1sq5_A Pantothenate kinase; P- 28.2 24 0.00082 32.8 2.0 17 110-126 81-97 (308)
309 3dl0_A Adenylate kinase; phosp 28.1 14 0.00046 32.0 0.3 15 112-126 3-17 (216)
310 1uhe_B Aspartate 1-decarboxyla 27.7 26 0.0009 20.6 1.4 17 6-22 6-22 (26)
311 2ius_A DNA translocase FTSK; n 27.6 12 0.0004 38.1 -0.3 17 110-126 168-184 (512)
312 2eyq_A TRCF, transcription-rep 27.6 34 0.0012 38.1 3.5 26 100-125 615-640 (1151)
313 1pzn_A RAD51, DNA repair and r 27.4 26 0.00089 33.4 2.2 30 97-126 116-148 (349)
314 2pbr_A DTMP kinase, thymidylat 27.2 15 0.0005 30.8 0.3 14 112-125 3-16 (195)
315 2jaq_A Deoxyguanosine kinase; 27.1 15 0.0005 31.1 0.3 15 112-126 3-17 (205)
316 3tqc_A Pantothenate kinase; bi 27.1 25 0.00085 33.3 1.9 15 112-126 95-109 (321)
317 3umf_A Adenylate kinase; rossm 27.1 15 0.00051 32.7 0.4 36 111-152 31-66 (217)
318 1xjc_A MOBB protein homolog; s 27.0 13 0.00043 32.0 -0.2 16 111-126 6-21 (169)
319 2if2_A Dephospho-COA kinase; a 27.0 14 0.00049 31.5 0.2 16 111-126 3-18 (204)
320 3sr0_A Adenylate kinase; phosp 26.8 15 0.00051 32.4 0.3 35 112-152 3-37 (206)
321 3plx_A Aspartate 1-decarboxyla 26.8 23 0.00078 21.0 1.0 17 6-22 9-25 (27)
322 2qmh_A HPR kinase/phosphorylas 26.8 17 0.00057 32.4 0.6 19 108-126 33-51 (205)
323 1vc3_A L-aspartate-alpha-decar 26.7 28 0.00096 20.4 1.4 17 6-22 6-22 (26)
324 2cdn_A Adenylate kinase; phosp 26.5 15 0.00052 31.3 0.3 18 109-126 20-37 (201)
325 1ak2_A Adenylate kinase isoenz 26.4 15 0.00052 32.4 0.3 17 110-126 17-33 (233)
326 4ddu_A Reverse gyrase; topoiso 26.4 24 0.00083 39.2 2.0 25 99-125 85-109 (1104)
327 2yvu_A Probable adenylyl-sulfa 26.4 15 0.00052 30.9 0.3 17 110-126 14-30 (186)
328 1zuh_A Shikimate kinase; alpha 26.3 16 0.00055 30.1 0.4 17 110-126 8-24 (168)
329 2plr_A DTMP kinase, probable t 26.3 15 0.00052 31.2 0.3 16 111-126 6-21 (213)
330 2xgj_A ATP-dependent RNA helic 26.1 23 0.00078 39.0 1.6 24 101-126 95-118 (1010)
331 3a8t_A Adenylate isopentenyltr 25.9 17 0.00058 34.9 0.5 15 111-125 42-56 (339)
332 2pcj_A ABC transporter, lipopr 25.9 14 0.00047 32.9 -0.2 15 112-126 33-47 (224)
333 3aez_A Pantothenate kinase; tr 25.9 14 0.00048 34.8 -0.1 16 111-126 92-107 (312)
334 2ce2_X GTPase HRAS; signaling 25.8 13 0.00043 29.7 -0.4 16 111-126 5-20 (166)
335 1zu4_A FTSY; GTPase, signal re 25.6 14 0.00048 34.9 -0.2 17 111-127 107-123 (320)
336 1g41_A Heat shock protein HSLU 25.6 16 0.00055 36.4 0.3 17 110-126 51-67 (444)
337 2zr9_A Protein RECA, recombina 25.5 23 0.00077 33.9 1.3 30 97-126 45-78 (349)
338 1zak_A Adenylate kinase; ATP:A 25.4 16 0.00054 31.8 0.2 16 111-126 7-22 (222)
339 3u4q_A ATP-dependent helicase/ 25.4 18 0.0006 40.7 0.6 25 104-128 18-42 (1232)
340 1jjv_A Dephospho-COA kinase; P 25.2 17 0.00058 31.1 0.3 15 112-126 5-19 (206)
341 2zj8_A DNA helicase, putative 25.1 15 0.0005 38.5 -0.1 17 110-126 40-56 (720)
342 1cke_A CK, MSSA, protein (cyti 25.1 17 0.0006 31.4 0.4 16 111-126 7-22 (227)
343 2ged_A SR-beta, signal recogni 24.9 14 0.00047 30.9 -0.3 19 108-126 47-65 (193)
344 3crm_A TRNA delta(2)-isopenten 24.7 19 0.00064 34.3 0.6 15 111-125 7-21 (323)
345 2d7d_A Uvrabc system protein B 24.6 31 0.0011 35.9 2.3 47 77-128 5-51 (661)
346 3ney_A 55 kDa erythrocyte memb 24.4 15 0.00051 32.3 -0.2 16 111-126 21-36 (197)
347 3foz_A TRNA delta(2)-isopenten 24.4 19 0.00066 34.2 0.6 15 111-125 12-26 (316)
348 2z0h_A DTMP kinase, thymidylat 24.3 18 0.0006 30.5 0.3 15 112-126 3-17 (197)
349 2vhj_A Ntpase P4, P4; non- hyd 24.3 19 0.00065 34.4 0.5 17 111-127 125-141 (331)
350 2onk_A Molybdate/tungstate ABC 24.3 15 0.00052 33.1 -0.2 15 112-126 27-41 (240)
351 3gfo_A Cobalt import ATP-bindi 24.1 15 0.00053 33.8 -0.2 14 113-126 38-51 (275)
352 1e4v_A Adenylate kinase; trans 24.1 18 0.0006 31.4 0.2 15 112-126 3-17 (214)
353 1nlf_A Regulatory protein REPA 24.1 16 0.00054 33.2 -0.1 17 110-126 31-47 (279)
354 1ex7_A Guanylate kinase; subst 24.1 18 0.00061 31.4 0.3 15 112-126 4-18 (186)
355 2xau_A PRE-mRNA-splicing facto 24.0 26 0.00087 37.4 1.5 24 101-125 102-125 (773)
356 3fvq_A Fe(3+) IONS import ATP- 23.9 15 0.00053 35.4 -0.2 14 113-126 34-47 (359)
357 2va8_A SSO2462, SKI2-type heli 23.9 23 0.00078 36.9 1.1 18 109-126 46-63 (715)
358 2cbz_A Multidrug resistance-as 23.8 16 0.00054 32.8 -0.2 15 112-126 34-48 (237)
359 1sgw_A Putative ABC transporte 23.7 15 0.00052 32.5 -0.3 14 113-126 39-52 (214)
360 2w00_A HSDR, R.ECOR124I; ATP-b 23.6 19 0.00064 39.9 0.4 17 111-127 302-318 (1038)
361 2v9p_A Replication protein E1; 23.6 16 0.00054 34.4 -0.2 17 110-126 127-143 (305)
362 1ji0_A ABC transporter; ATP bi 23.6 16 0.00055 32.8 -0.2 15 112-126 35-49 (240)
363 2dyk_A GTP-binding protein; GT 23.5 15 0.00052 29.4 -0.3 16 111-126 3-18 (161)
364 1g6h_A High-affinity branched- 23.4 16 0.00055 33.1 -0.2 15 112-126 36-50 (257)
365 1np6_A Molybdopterin-guanine d 23.4 16 0.00056 31.2 -0.1 16 111-126 8-23 (174)
366 3exa_A TRNA delta(2)-isopenten 23.4 21 0.00071 34.0 0.6 15 111-125 5-19 (322)
367 3o8b_A HCV NS3 protease/helica 23.2 26 0.00087 36.8 1.3 17 111-127 234-250 (666)
368 1b0u_A Histidine permease; ABC 23.1 17 0.00057 33.2 -0.2 14 113-126 36-49 (262)
369 3be4_A Adenylate kinase; malar 23.0 19 0.00065 31.3 0.2 16 111-126 7-22 (217)
370 2yyz_A Sugar ABC transporter, 22.9 17 0.00057 35.1 -0.2 15 112-126 32-46 (359)
371 2qt1_A Nicotinamide riboside k 22.9 19 0.00065 30.8 0.2 16 111-126 23-38 (207)
372 2ff7_A Alpha-hemolysin translo 22.9 17 0.00058 32.9 -0.2 15 112-126 38-52 (247)
373 2wwf_A Thymidilate kinase, put 22.8 19 0.00065 30.7 0.2 16 111-126 12-27 (212)
374 2whx_A Serine protease/ntpase/ 22.8 23 0.0008 36.6 0.9 24 101-126 180-203 (618)
375 3tlx_A Adenylate kinase 2; str 22.8 19 0.00067 32.1 0.3 17 110-126 30-46 (243)
376 3rlf_A Maltose/maltodextrin im 22.8 17 0.00058 35.4 -0.2 14 113-126 33-46 (381)
377 2yz2_A Putative ABC transporte 22.7 17 0.00058 33.2 -0.2 15 112-126 36-50 (266)
378 1mv5_A LMRA, multidrug resista 22.7 17 0.00059 32.6 -0.2 15 112-126 31-45 (243)
379 3qks_A DNA double-strand break 22.6 18 0.00062 31.5 -0.0 16 111-126 25-40 (203)
380 1z47_A CYSA, putative ABC-tran 22.6 17 0.00059 35.0 -0.2 15 112-126 44-58 (355)
381 4g1u_C Hemin import ATP-bindin 22.5 18 0.0006 33.2 -0.1 14 113-126 41-54 (266)
382 1ltq_A Polynucleotide kinase; 22.5 20 0.00068 32.7 0.3 16 111-126 4-19 (301)
383 3hr8_A Protein RECA; alpha and 22.4 28 0.00096 33.5 1.3 30 97-126 45-78 (356)
384 2ghi_A Transport protein; mult 22.3 18 0.0006 33.0 -0.2 15 112-126 49-63 (260)
385 2it1_A 362AA long hypothetical 22.2 18 0.00061 35.0 -0.2 15 112-126 32-46 (362)
386 2xb4_A Adenylate kinase; ATP-b 22.2 21 0.00071 31.3 0.3 15 112-126 3-17 (223)
387 1g29_1 MALK, maltose transport 22.1 18 0.00061 35.1 -0.2 15 112-126 32-46 (372)
388 2olj_A Amino acid ABC transpor 22.0 18 0.00061 33.1 -0.2 15 112-126 53-67 (263)
389 1vht_A Dephospho-COA kinase; s 21.9 21 0.00073 30.8 0.3 16 111-126 6-21 (218)
390 3l9o_A ATP-dependent RNA helic 21.9 26 0.00089 39.0 1.1 24 100-125 192-215 (1108)
391 2jeo_A Uridine-cytidine kinase 21.8 18 0.00062 32.1 -0.2 15 112-126 28-42 (245)
392 1z2a_A RAS-related protein RAB 21.6 17 0.0006 29.2 -0.3 17 110-126 6-22 (168)
393 1tf7_A KAIC; homohexamer, hexa 21.6 23 0.0008 35.6 0.6 28 99-126 26-56 (525)
394 2pez_A Bifunctional 3'-phospho 21.6 23 0.00078 29.6 0.4 16 111-126 7-22 (179)
395 1zj6_A ADP-ribosylation factor 21.5 45 0.0015 27.5 2.3 23 104-126 11-33 (187)
396 1vpl_A ABC transporter, ATP-bi 21.5 19 0.00064 32.8 -0.2 15 112-126 44-58 (256)
397 1v43_A Sugar-binding transport 21.4 19 0.00064 34.9 -0.2 15 112-126 40-54 (372)
398 2v54_A DTMP kinase, thymidylat 21.4 22 0.00074 30.1 0.3 16 111-126 6-21 (204)
399 2pze_A Cystic fibrosis transme 21.4 19 0.00064 32.1 -0.2 15 112-126 37-51 (229)
400 3s6w_A Tudor domain-containing 21.1 1E+02 0.0034 20.7 3.6 32 2-33 10-41 (54)
401 1g5t_A COB(I)alamin adenosyltr 21.0 16 0.00054 32.3 -0.7 20 109-128 28-47 (196)
402 1w4r_A Thymidine kinase; type 21.0 24 0.00084 31.0 0.5 17 109-125 20-36 (195)
403 2zu0_C Probable ATP-dependent 21.0 19 0.00066 32.9 -0.2 15 112-126 49-63 (267)
404 1nn5_A Similar to deoxythymidy 20.9 22 0.00076 30.3 0.2 16 111-126 11-26 (215)
405 2nq2_C Hypothetical ABC transp 20.9 19 0.00067 32.6 -0.2 15 112-126 34-48 (253)
406 2d2e_A SUFC protein; ABC-ATPas 20.9 20 0.00067 32.4 -0.2 15 112-126 32-46 (250)
407 3lda_A DNA repair protein RAD5 20.9 29 0.001 33.9 1.1 31 97-127 163-196 (400)
408 2p6r_A Afuhel308 helicase; pro 20.9 19 0.00066 37.5 -0.3 22 103-126 36-57 (702)
409 2ixe_A Antigen peptide transpo 20.8 20 0.00067 32.9 -0.2 15 112-126 48-62 (271)
410 3auy_A DNA double-strand break 20.8 27 0.00091 33.4 0.8 16 111-126 27-42 (371)
411 2ihy_A ABC transporter, ATP-bi 20.7 20 0.00068 33.1 -0.2 15 112-126 50-64 (279)
412 2pjz_A Hypothetical protein ST 20.5 20 0.00069 32.8 -0.2 16 111-126 32-47 (263)
413 2qi9_C Vitamin B12 import ATP- 20.5 20 0.00069 32.5 -0.2 15 112-126 29-43 (249)
414 3qf7_A RAD50; ABC-ATPase, ATPa 20.4 19 0.00067 34.5 -0.3 15 112-126 26-40 (365)
415 1g5v_A SurviVal motor neuron p 20.3 1E+02 0.0035 23.3 3.9 49 2-52 19-67 (88)
416 1nij_A Hypothetical protein YJ 20.0 25 0.00085 32.9 0.4 15 112-126 7-21 (318)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.2e-77 Score=589.59 Aligned_cols=271 Identities=35% Similarity=0.496 Sum_probs=239.8
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.
T Consensus 54 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~------~~~Giipr~~~~lF~~ 127 (350)
T 2vvg_A 54 VPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK------EEPGAIPNSFKHLFDA 127 (350)
T ss_dssp --EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS------SSBCHHHHHHHHHHHH
T ss_pred CceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCC------ccCchHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999974 4799999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------- 225 (386)
++... .+..|.|++||+|||||+|+|||+++.++.+++|+.++++|.|++++.|.+++|++++|..|.++|.
T Consensus 128 i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N 206 (350)
T 2vvg_A 128 INSSS-SNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMN 206 (350)
T ss_dssp HHTCC-TTEEEEEEEEEEEEETTEEEETTTTEEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC--------
T ss_pred HHhhc-cCCcEEEEEEEEEEeCCEEEEcccCCcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCC
Confidence 98643 5689999999999999999999999889999999999999999999999999999999999987765
Q ss_pred -----ceeEEEEe------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcc
Q psy23 226 -----NNICFSFL------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHL 288 (386)
Q Consensus 226 -----~h~i~~l~------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~v 288 (386)
+|+||++. ...|+|+|||||||||..+++. .+.+++|+..||+||++|++||.+|++++.||
T Consensus 207 ~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~-~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hv 285 (350)
T 2vvg_A 207 DTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGA-TGETLVEGAKINLSLSALGLVISKLVEGATHI 285 (350)
T ss_dssp --CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCCCC----------------CTTHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCCCccccccc-cHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCC
Confidence 59999982 2468999999999999988764 45678899999999999999999999999999
Q ss_pred cCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCch
Q psy23 289 PFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPT 352 (386)
Q Consensus 289 PyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~ 352 (386)
||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+|.|.+|..+.+.
T Consensus 286 PyRdSkLT~lLqds-LgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 286 PYRDSKLTRLLQDS-LGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp CGGGCHHHHHTTTT-TTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred CccccHHHHHHHHh-cCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence 99999999999999 5999999999999999999999999999999999999999999977654
No 2
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2e-77 Score=595.35 Aligned_cols=269 Identities=68% Similarity=1.056 Sum_probs=228.1
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
++.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+..+......+|||||++++||..+
T Consensus 100 ~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~ 179 (387)
T 2heh_A 100 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLK 179 (387)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHH
T ss_pred ccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999997655555668999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-------- 225 (386)
+.....++.|.|++||+|||||+|+|||+++.++.++||++++++|.|++++.|.+++|++++|..|.++|.
T Consensus 180 ~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~ 259 (387)
T 2heh_A 180 NQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANS 259 (387)
T ss_dssp TSHHHHTTTCEEEEEEEEEETTEEEETTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------
T ss_pred hcccccCceEEEEEEEEEecCCeEEECCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcC
Confidence 875445678999999999999999999999999999999999999999999999999999999999987765
Q ss_pred ----ceeEEEEe-----EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCccc
Q psy23 226 ----NNICFSFL-----QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLT 296 (386)
Q Consensus 226 ----~h~i~~l~-----~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSkLT 296 (386)
+|+||++. ...|+|+|||||||||..+++..++++++|+..||+||++|++||.+|++++.||||||||||
T Consensus 260 ~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLT 339 (387)
T 2heh_A 260 NSSRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLT 339 (387)
T ss_dssp CGGGSEEEEEEEEESSSSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHH
T ss_pred CcccceEEEEEEEEECCeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHH
Confidence 59999993 357999999999999998887677777889999999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccC
Q psy23 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAAT 342 (386)
Q Consensus 297 ~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~ 342 (386)
+||||+|+||||+|+||+||||+..+++||++||+||+|||+|++.
T Consensus 340 rlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 340 QVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp HHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred HHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 9999997799999999999999999999999999999999999875
No 3
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.6e-76 Score=586.50 Aligned_cols=280 Identities=33% Similarity=0.467 Sum_probs=242.9
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
+++.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|.... ...+|||||++++||+.
T Consensus 49 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~---~~~~Giipr~~~~lF~~ 125 (365)
T 2y65_A 49 AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGD---SVKQGIIPRIVNDIFNH 125 (365)
T ss_dssp TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTC---TTTBCHHHHHHHHHHHH
T ss_pred CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCC---cccCChHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999997432 34689999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------ 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------ 225 (386)
+.... .++.|.|++||+|||||+|+|||++. ..+.+++|++++++|.|++++.|.|++|++.+|..|.++|.
T Consensus 126 i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~ 204 (365)
T 2y65_A 126 IYAME-VNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNM 204 (365)
T ss_dssp HHHCC-SCEEEEEEEEEEEEETTEEEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCH
T ss_pred HHhcc-CCceEEEEEEEEEEECCeeeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccC
Confidence 97643 46899999999999999999999864 47999999999999999999999999999999999988775
Q ss_pred ------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcC-CCcc
Q psy23 226 ------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK-GAHL 288 (386)
Q Consensus 226 ------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~-~~~v 288 (386)
+|+||++. ...|+|+|||||||||..+++. .+.+++|+..||+||++|++||.+|+++ ..||
T Consensus 205 N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hv 283 (365)
T 2y65_A 205 NEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGA-EGTVLDEAKNINKSLSALGNVISALADGNKTHI 283 (365)
T ss_dssp HHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC-----------------CCHHHHHHHHHHHHHHHCCCSCC
T ss_pred CCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEECCCCCcchhcCC-cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 59999993 3468999999999999988764 4567889999999999999999999986 5899
Q ss_pred cCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhhhhcc
Q psy23 289 PFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQRQS 358 (386)
Q Consensus 289 PyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~~~~~ 358 (386)
||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+|.|.+|..+....+.+..
T Consensus 284 PyRdSkLT~lLqds-LgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~ 352 (365)
T 2y65_A 284 PYRDSKLTRILQES-LGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRY 352 (365)
T ss_dssp CGGGCHHHHHTGGG-TTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC-
T ss_pred ccccCHHHHHHHhh-cCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHH
Confidence 99999999999999 5999999999999999999999999999999999999999999988877666544
No 4
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.4e-76 Score=583.69 Aligned_cols=282 Identities=33% Similarity=0.472 Sum_probs=256.2
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+.. .....+|||||++++||+.
T Consensus 45 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~--~~~~~~Giipr~~~~lF~~ 122 (355)
T 1goj_A 45 AQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSI--DDPDGRGVIPRIVEQIFTS 122 (355)
T ss_dssp CCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCT--TSTTTBCHHHHHHHHHHHH
T ss_pred CccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCC--CCcccCCchHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999632 1235689999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------ 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------ 225 (386)
+.... .++.|.|++||+|||||+|+|||++. ..+.++++++++++|.|++++.|.+++|++++|..|.++|.
T Consensus 123 i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 201 (355)
T 1goj_A 123 ILSSA-ANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNM 201 (355)
T ss_dssp HHTSC-TTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcc-cCceEEEEEEEEEEECCEEEEcccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccC
Confidence 97654 56899999999999999999999975 46899999999999999999999999999999999987665
Q ss_pred ------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcC-CCcc
Q psy23 226 ------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK-GAHL 288 (386)
Q Consensus 226 ------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~-~~~v 288 (386)
+|+||++. ...|+|+|||||||||..+++.. +.+++|+..||+||++|++||.+|+++ ..||
T Consensus 202 N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hv 280 (355)
T 1goj_A 202 NQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGAS-GQTLEEAKKINKSLSALGMVINALTDGKSSHV 280 (355)
T ss_dssp TCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSCCTTSSSC-CCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCC
T ss_pred CCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCCCCcccccccc-hhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCC
Confidence 59999993 34689999999999999887654 567789999999999999999999985 5899
Q ss_pred cCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhhhhccc
Q psy23 289 PFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQRQSK 359 (386)
Q Consensus 289 PyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~~~~~~ 359 (386)
||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+|.|.+|....+..++...+
T Consensus 281 PyRdSkLT~lLqds-LgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~l~~~l~ 350 (355)
T 1goj_A 281 PYRDSKLTRILQES-LGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLA 350 (355)
T ss_dssp CGGGCHHHHHTGGG-TTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSSSCCCCC
T ss_pred CCccCHHHHHHHHH-hCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHHHHHHHH
Confidence 99999999999999 59999999999999999999999999999999999999999999888776665443
No 5
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.5e-77 Score=595.61 Aligned_cols=272 Identities=67% Similarity=1.048 Sum_probs=232.6
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
++.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+..+......+|||||++++||..+
T Consensus 120 ~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~ 199 (410)
T 1v8k_A 120 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLK 199 (410)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHH
T ss_pred ceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999998665555678999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-------- 225 (386)
+.....++.|.|++||+|||||+|+|||+++.++.+++|++++++|.|++++.|.|++|++.+|..|..+|.
T Consensus 200 ~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~ 279 (410)
T 1v8k_A 200 NQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANS 279 (410)
T ss_dssp TSHHHHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------
T ss_pred hhhcccCccEEEEEEEEEeeCCEEEECCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCC
Confidence 865445689999999999999999999999999999999999999999999999999999999999987775
Q ss_pred ----ceeEEEEe-----EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCccc
Q psy23 226 ----NNICFSFL-----QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLT 296 (386)
Q Consensus 226 ----~h~i~~l~-----~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSkLT 296 (386)
+|+||++. ...|+|+|||||||||..+++..++++++|+..||+||++|++||.+|++++.||||||||||
T Consensus 280 ~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLT 359 (410)
T 1v8k_A 280 NSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLT 359 (410)
T ss_dssp CCCSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHH
T ss_pred CCCCceEEEEEEEEeCCcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhH
Confidence 59999994 357999999999999998887667777789999999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q psy23 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPT 345 (386)
Q Consensus 297 ~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~ 345 (386)
+||||+|+||||+|+||+||||+..+++||++||+||+|||+|..+|..
T Consensus 360 rLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~~ 408 (410)
T 1v8k_A 360 QVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHHH 408 (410)
T ss_dssp HHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCCC
Confidence 9999996799999999999999999999999999999999999887753
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-76 Score=588.88 Aligned_cols=313 Identities=27% Similarity=0.393 Sum_probs=241.6
Q ss_pred ecCccCCeEEeeeeeeccCCCCCCCCCCCCccccCcee------ecC------CCCceeeeeEEcCCCCChHHHHHhhhh
Q psy23 31 EKGETKGKEVELDALFSLNSNLMPKTNNENSQYNNCRS------MPL------SGNKLSRCWKVLSLKNTVPLDFRFSAK 98 (386)
Q Consensus 31 ~~~~~~gk~~~~~~i~~~n~~l~p~~~~~~~~~~~~~~------~~~------~~~~~f~fd~vf~~~~sq~~vf~~~~~ 98 (386)
|+...++..-.+++++++.|. .++|...... .|.. ..+ ...+.|.||+||+++++|++||+.+++
T Consensus 12 ~~~~~~~~~~~irV~vRvRP~-~~~E~~~~~~--~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~ 88 (388)
T 3bfn_A 12 ENLYFQGPPARVRVAVRLRPF-VDGTAGASDP--PCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQ 88 (388)
T ss_dssp --CCSSSCCCCCEEEEEECCC-C-------------------------------CEEEEECSEEECTTCCHHHHHHHHTG
T ss_pred ccccccCCCCCEEEEEECCCC-ChhhhccCCC--ceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHH
Confidence 344555556677888888883 3444322111 1111 111 123579999999999999999999999
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcCC--CCCCceeeEEEEEEEEEcCe
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSP--KYRGLNLHVSASFFEIYSGK 176 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~--~~~~~~~~v~vS~~EIyne~ 176 (386)
|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.++.. ....+.|.|++||+|||||+
T Consensus 89 plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~------~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~ 162 (388)
T 3bfn_A 89 PILRHLLEGQNASVLAYGPTGAGKTHTMLGSP------EQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEK 162 (388)
T ss_dssp GGHHHHTTTCCEEEEEESCTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTE
T ss_pred HHHHHhhcCceeeEeeecCCCCCCCeEeecCc------cccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCe
Confidence 99999999999999999999999999999973 37899999999999998653 23467999999999999999
Q ss_pred eeeccccc-ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------------ceeEEEEe----------
Q psy23 177 VFDLLAEK-AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------------NNICFSFL---------- 233 (386)
Q Consensus 177 v~DLL~~~-~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------------~h~i~~l~---------- 233 (386)
|+|||++. .++.+++|+.++++|.|++++.|.+++|++.+|..|.++|. +|+||++.
T Consensus 163 i~DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~ 242 (388)
T 3bfn_A 163 VLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPF 242 (388)
T ss_dssp EEESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTC
T ss_pred eeehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCC
Confidence 99999876 46999999999999999999999999999999999987775 59999992
Q ss_pred -EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCccccccccccCCCCCeEEE
Q psy23 234 -QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312 (386)
Q Consensus 234 -~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSkLT~lL~d~llggns~t~~ 312 (386)
...|+|+|||||||||..++++. +.+++|+..||+||++|++||.+|+++..||||||||||+||||+ |||||+|+|
T Consensus 243 ~~~~skL~lVDLAGSEr~~~t~~~-g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqds-LgGnskT~m 320 (388)
T 3bfn_A 243 RQREGKLYLIDLAGSEDNRRTGNK-GLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDS-LGGSAHSIL 320 (388)
T ss_dssp CEEEEEEEEEECCCTTC---------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTS-SSTTCEEEE
T ss_pred ceeEEEEEEEECCCCcccccccCc-cchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHh-hCCCccEEE
Confidence 25689999999999998887644 567889999999999999999999999999999999999999999 599999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhh
Q psy23 313 IAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTII 354 (386)
Q Consensus 313 I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~ 354 (386)
|+||||+..+++||++||+||+|||+|+|.|.+|....+..+
T Consensus 321 Ia~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 321 IANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp EEEECCSGGGHHHHHHHHHHHCSEEEEC--------------
T ss_pred EEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 999999999999999999999999999999999998777665
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=6e-76 Score=579.60 Aligned_cols=272 Identities=31% Similarity=0.450 Sum_probs=241.8
Q ss_pred CCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHH
Q psy23 71 LSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVF 150 (386)
Q Consensus 71 ~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF 150 (386)
..+.+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+. .++|||||++++||
T Consensus 40 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~------~~~Giipr~~~~lF 113 (349)
T 1t5c_A 40 VDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSE------DHLGVIPRAIHDIF 113 (349)
T ss_dssp TTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCS------SSBCHHHHHHHHHH
T ss_pred CCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCC------CCCchHHHHHHHHH
Confidence 456689999999999999999999999999999999999999999999999999999973 36899999999999
Q ss_pred HHhcCCCCCCceeeEEEEEEEEEcCeeeeccccc---ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--
Q psy23 151 KLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK---AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-- 225 (386)
Q Consensus 151 ~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~---~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-- 225 (386)
+.++... +..|.|++||+|||||+|+|||++. .++.+++|++++++|.|++++.|.+++|++.+|..|.++|.
T Consensus 114 ~~i~~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~ 191 (349)
T 1t5c_A 114 QKIKKFP--DREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYG 191 (349)
T ss_dssp HHGGGCT--TEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSS
T ss_pred HHHHhCc--CCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccc
Confidence 9998754 5799999999999999999999865 46899999999999999999999999999999999987775
Q ss_pred ----------ceeEEEEe---------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHH
Q psy23 226 ----------NNICFSFL---------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRA 280 (386)
Q Consensus 226 ----------~h~i~~l~---------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~a 280 (386)
+|+||++. ...|+|+|||||||||..+++.. +.+++|+..||+||++|++||.+
T Consensus 192 ~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~a 270 (349)
T 1t5c_A 192 ETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAA-GVRLKEGCNINRSLFILGQVIKK 270 (349)
T ss_dssp SSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGGTC--------CCCSSSCCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCccccccCCc-cccchhhhHHhHHHHHHHHHHHH
Confidence 59999982 23589999999999999887644 56778999999999999999999
Q ss_pred HhcCC--CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhh
Q psy23 281 LGRKG--AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTII 354 (386)
Q Consensus 281 L~~~~--~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~ 354 (386)
|++++ .||||||||||+||||+ |||||+|+||+||||. +++||++||+||+|||+|+|.|.+|..+.+..-
T Consensus 271 L~~~~~~~hvPyRdSkLT~lLqds-LgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~~~ 343 (349)
T 1t5c_A 271 LSDGQVGGFINYRDSKLTRILQNS-LGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELE 343 (349)
T ss_dssp HHHTCCTTSSCGGGSHHHHHTGGG-TTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC-----
T ss_pred HhccCCCCCCcccccHHHHHHHHh-cCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCCCC
Confidence 99865 69999999999999999 5999999999999996 589999999999999999999999997766543
No 8
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.6e-76 Score=583.76 Aligned_cols=275 Identities=32% Similarity=0.473 Sum_probs=238.9
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|... ...++|||||++++||..+
T Consensus 67 ~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~~~~Giipr~~~~lF~~i 143 (372)
T 3b6u_A 67 PKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG---DPEKRGVIPNSFDHIFTHI 143 (372)
T ss_dssp CEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTT---SGGGBCHHHHHHHHHHHHH
T ss_pred ceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCC---CcccCCcHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999643 2356899999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeeccccc--ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEK--AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------ 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~--~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------ 225 (386)
+.. .++.|.|++||+|||||+|+|||++. .++.++++++++++|.|++++.|.+++|++++|..|.++|.
T Consensus 144 ~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 221 (372)
T 3b6u_A 144 SRS--QNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNM 221 (372)
T ss_dssp HTC--SSCEEEEEEEEEEEETTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSH
T ss_pred hhc--cCCceEEEEEEEEEeCCEEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccC
Confidence 874 46799999999999999999999875 46899999999999999999999999999999999987775
Q ss_pred ------ceeEEEEe-------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCC-
Q psy23 226 ------NNICFSFL-------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKG- 285 (386)
Q Consensus 226 ------~h~i~~l~-------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~- 285 (386)
+|+||++. ...|+|+|||||||||..++++. +.+++|+..||+||++|++||.+|++++
T Consensus 222 N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 300 (372)
T 3b6u_A 222 NEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQ-GERLKEATKINLSLSALGNVISALVDGKS 300 (372)
T ss_dssp HHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEECCCCCE-----------EEEGGGCCHHHHHHHHHHHHHHCC--
T ss_pred CCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEECCCCccccccCcc-hhhhhhHhhhhhhHHHHHHHHHHHhcCCC
Confidence 59999982 24589999999999999888654 5677899999999999999999999854
Q ss_pred CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhhh
Q psy23 286 AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQ 355 (386)
Q Consensus 286 ~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~~ 355 (386)
.||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+|.|.+|+.+.+..+.
T Consensus 301 ~hvPyRdSkLT~lLqds-LgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~ 369 (372)
T 3b6u_A 301 THIPYRDSKLTRLLQDS-LGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLR 369 (372)
T ss_dssp -CCCGGGSHHHHHTTTT-TTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC--------
T ss_pred CCCcccccHHHHHHHHh-cCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHH
Confidence 69999999999999999 5999999999999999999999999999999999999999999987765543
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.3e-75 Score=579.50 Aligned_cols=269 Identities=34% Similarity=0.528 Sum_probs=231.5
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCC-----CcccccchhhhhHHH
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGK-----TQDCKKGIYAMAAKD 148 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~-----~~~~~~Gli~r~~~~ 148 (386)
.+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+.... ..+..+|||||++++
T Consensus 54 ~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~ 133 (359)
T 1x88_A 54 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQ 133 (359)
T ss_dssp EEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHH
T ss_pred ceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999975321 122357999999999
Q ss_pred HHHHhcCCCCCCceeeEEEEEEEEEcCeeeecccccc----cceEEEcC--CCceEEeccEEEEeCCHHHHHHHHHhccc
Q psy23 149 VFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----KLRVLEDG--KQQVQIVGLTEQVVDSVEEVLKLIQHGNS 222 (386)
Q Consensus 149 LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~----~l~i~ed~--~~~~~v~~l~~~~V~s~~e~~~ll~~g~~ 222 (386)
||+.++. .++.|.|++||+|||||+|+|||++.. .+.+++++ +++++|.|++++.|.+++|++++|..|..
T Consensus 134 lF~~i~~---~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~ 210 (359)
T 1x88_A 134 IFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 210 (359)
T ss_dssp HHHHTSS---SSEEEEEEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHH
T ss_pred HHHHHhc---cCceEEEEEEEEEEeCceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHh
Confidence 9999976 468999999999999999999998753 58899997 47899999999999999999999999987
Q ss_pred ccc------------ceeEEEEe-------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHH
Q psy23 223 ASI------------NNICFSFL-------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKEC 277 (386)
Q Consensus 223 ~r~------------~h~i~~l~-------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~v 277 (386)
+|. +|+||++. ...|+|+|||||||||..++++. +.+++|+..||+||++|++|
T Consensus 211 ~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~v 289 (359)
T 1x88_A 211 KRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAV-DKRAREAGNINQSLLTLGRV 289 (359)
T ss_dssp HHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC----------------CCCHHHHHHHHH
T ss_pred hcccccccCCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCc-ccchHHHhhhhHHHHHHHHH
Confidence 775 59999982 23689999999999999888654 56778999999999999999
Q ss_pred HHHHhcCCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q psy23 278 IRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEG 347 (386)
Q Consensus 278 I~aL~~~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~ 347 (386)
|.+|+++..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+|.|.+|+
T Consensus 290 I~aL~~~~~hvPyRdSkLT~lLqds-LgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 290 ITALVERTPHVPYRESKLTRILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp HHHHHTTCSCCCGGGSHHHHHTGGG-SSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHHhcCCCCCccccchHHHHHHHH-hCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999999999999999 59999999999999999999999999999999999999999986
No 10
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-75 Score=582.05 Aligned_cols=273 Identities=33% Similarity=0.514 Sum_probs=231.6
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCC-----CCcccccchhhhhHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQG-----KTQDCKKGIYAMAAK 147 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~-----~~~~~~~Gli~r~~~ 147 (386)
..+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+... +....++|||||+++
T Consensus 65 ~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~ 144 (373)
T 2wbe_C 65 LTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALS 144 (373)
T ss_dssp TCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHH
T ss_pred CceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHH
Confidence 357899999999999999999999999999999999999999999999999999997542 123457899999999
Q ss_pred HHHHHhcCCCCCCceeeEEEEEEEEEcCeeeecccccc--cceEEEcC--CCceEEeccEEEEeCCHHHHHHHHHhcccc
Q psy23 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA--KLRVLEDG--KQQVQIVGLTEQVVDSVEEVLKLIQHGNSA 223 (386)
Q Consensus 148 ~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~--~l~i~ed~--~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~ 223 (386)
+||+.++.. +..|.|++||+|||||+|+|||++.. ++++++++ +++++|.|++++.|.+++|++++|..|.++
T Consensus 145 ~lF~~i~~~---~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~ 221 (373)
T 2wbe_C 145 HLFDELRMM---EVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKER 221 (373)
T ss_dssp HHHHHHHHC---CSCEEEEEEEEEEETTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CceEEEEEEEEEEeCCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhh
Confidence 999999763 46899999999999999999998653 57788874 578999999999999999999999999887
Q ss_pred cc------------ceeEEEEe-------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHH
Q psy23 224 SI------------NNICFSFL-------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECI 278 (386)
Q Consensus 224 r~------------~h~i~~l~-------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI 278 (386)
|. +|+||++. ...|+|+|||||||||..++++..+.+++|+..||+||++|++||
T Consensus 222 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI 301 (373)
T 2wbe_C 222 RKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVI 301 (373)
T ss_dssp HTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHH
T ss_pred hccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHH
Confidence 76 59999982 246999999999999998887665778899999999999999999
Q ss_pred HHHhcCCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCC
Q psy23 279 RALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPP 349 (386)
Q Consensus 279 ~aL~~~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~ 349 (386)
.+|+++..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+|.|.+|+..
T Consensus 302 ~aL~~~~~hvPyRdSkLT~lLqds-LgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 302 TALVDRAPHVPYRESKLTRLLQES-LGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp HHHHHCSSCCCGGGCHHHHHTHHH-HHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred HHHHcCCCcCccccchHHHHHHHH-hCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 999999999999999999999999 5999999999999999999999999999999999999999999743
No 11
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.8e-75 Score=579.85 Aligned_cols=270 Identities=33% Similarity=0.476 Sum_probs=231.5
Q ss_pred CCceeeeeEEcCCC--------CChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhh
Q psy23 73 GNKLSRCWKVLSLK--------NTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAM 144 (386)
Q Consensus 73 ~~~~f~fd~vf~~~--------~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r 144 (386)
..+.|.||+||+++ ++|++||+.+++|+|+++++|||+||||||||||||||||+|+.. ..++|||||
T Consensus 46 ~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~----~~~~Giipr 121 (366)
T 2zfi_A 46 TPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE----KDQQGIIPQ 121 (366)
T ss_dssp CCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSG----GGCBCHHHH
T ss_pred CceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCc----cCCCccHHH
Confidence 35689999999887 899999999999999999999999999999999999999999743 357899999
Q ss_pred hHHHHHHHhcCCCCCCceeeEEEEEEEEEcCeeeeccccc--ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhccc
Q psy23 145 AAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK--AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNS 222 (386)
Q Consensus 145 ~~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~--~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~ 222 (386)
++++||+.++.....++.|.|++||+|||||+|+|||++. ..+.+++++..+++|.|++++.|.+++|++++|..|.+
T Consensus 122 ~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~ 201 (366)
T 2zfi_A 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNK 201 (366)
T ss_dssp HHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhh
Confidence 9999999998876667899999999999999999999875 46999999999999999999999999999999999987
Q ss_pred ccc------------ceeEEEEe--------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHH
Q psy23 223 ASI------------NNICFSFL--------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKE 276 (386)
Q Consensus 223 ~r~------------~h~i~~l~--------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~ 276 (386)
+|. +|+||++. ...|+|+|||||||||..++++ .+.+++|+..||+||++|++
T Consensus 202 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aLg~ 280 (366)
T 2zfi_A 202 PRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGA-KGTRLKEGANINKSLTTLGK 280 (366)
T ss_dssp HHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC-------CCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEEEEeCCCCccccccCC-CccchhhhhhHhHHHHHHHH
Confidence 775 59999982 2358999999999999888754 45678899999999999999
Q ss_pred HHHHHhc------------CCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCC
Q psy23 277 CIRALGR------------KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDP 344 (386)
Q Consensus 277 vI~aL~~------------~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~ 344 (386)
||.+|++ +..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|++.|.
T Consensus 281 vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqds-LgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~ 359 (366)
T 2zfi_A 281 VISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLREN-LGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVS 359 (366)
T ss_dssp HHHHHHHHC--------------CCGGGSHHHHHTGGG-SSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHhcccccccccccccCCcccccccHHHHHHHHH-hCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCC
Confidence 9999986 3579999999999999999 69999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy23 345 TEGP 348 (386)
Q Consensus 345 ~~~~ 348 (386)
++..
T Consensus 360 ~~~~ 363 (366)
T 2zfi_A 360 VNHH 363 (366)
T ss_dssp ----
T ss_pred CCCC
Confidence 8763
No 12
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=4.6e-75 Score=576.46 Aligned_cols=266 Identities=33% Similarity=0.473 Sum_probs=247.9
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.||+||+++++|++||+. ++|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+
T Consensus 46 ~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~------~~~Giipr~~~~lF~~i 118 (369)
T 3cob_A 46 AKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGAD------SNPGLTPRAMSELFRIM 118 (369)
T ss_dssp EEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHH
T ss_pred ceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCC------CCCchhHHHHHHHHHHH
Confidence 3689999999999999999999 7999999999999999999999999999999973 47999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeeccccc----ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc----
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEK----AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI---- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~---- 225 (386)
+... ..+.|.|++||+|||||+|+|||++. ..+.+++|++++++|.|++++.|.+++|++.+|..|.++|.
T Consensus 119 ~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T 197 (369)
T 3cob_A 119 KKDS-NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGT 197 (369)
T ss_dssp HHTT-TTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSC
T ss_pred Hhhc-cCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecc
Confidence 8755 34799999999999999999999864 46899999999999999999999999999999999987775
Q ss_pred --------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCc
Q psy23 226 --------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAH 287 (386)
Q Consensus 226 --------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~ 287 (386)
+|+||++. ...|+|+|||||||||..++++. +.+++|+..||+||++|++||.+|++++.|
T Consensus 198 ~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~h 276 (369)
T 3cob_A 198 LMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSA-GNQLKEAQSINKSLSALGDVISALSSGNQH 276 (369)
T ss_dssp CTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSCCCCCSSC-SHHHHHHHHHTHHHHHHHHHHHHHHTTCSC
T ss_pred cCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCCCcccccCcc-chhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 59999993 24689999999999999888654 567889999999999999999999999999
Q ss_pred ccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCC
Q psy23 288 LPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPP 349 (386)
Q Consensus 288 vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~ 349 (386)
|||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|++.|.+|..+
T Consensus 277 vPyRdSkLT~lLqds-LgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 277 IPYRNHKLTMLMSDS-LGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp CCGGGCHHHHHTTTT-TTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred CCCcCCHHHHHHHHh-cCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH
Confidence 999999999999999 5999999999999999999999999999999999999999999877
No 13
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.1e-75 Score=574.38 Aligned_cols=297 Identities=35% Similarity=0.530 Sum_probs=241.4
Q ss_pred CCeEEeeeeeeccCCCCCCCCCCCCccc-----cCceeecCCCCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCc
Q psy23 36 KGKEVELDALFSLNSNLMPKTNNENSQY-----NNCRSMPLSGNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMA 110 (386)
Q Consensus 36 ~gk~~~~~~i~~~n~~l~p~~~~~~~~~-----~~~~~~~~~~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ 110 (386)
+..+-.+++++++.| +.++|...+... +......++.++.|.||+||+++++|++||+.+++|+|+++++|||+
T Consensus 7 ~~~~~~i~V~vRvRP-~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ 85 (344)
T 4a14_A 7 GAEEAPVRVALRVRP-LLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNA 85 (344)
T ss_dssp --CCCCCEEEEEECC-CCHHHHHTTCCBCEEEEGGGTEEEETTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CccccceEEEEEecc-cchHHHhccCeeEEEEcCCCceEEecccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCe
Confidence 344566788888887 445443332211 11123345678899999999999999999999999999999999999
Q ss_pred eeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcCCCCCCceeeEEEEEEEEEcCeeeeccccc---ccc
Q psy23 111 TCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK---AKL 187 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~---~~l 187 (386)
||||||||||||||||+|.........++|||||++++||+.++... ...|.|++||+|||||+|+|||++. .++
T Consensus 86 tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l 163 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEND--LLDCLVHVSYLEVYKEEFRDLLEVGTASRDI 163 (344)
T ss_dssp EEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCT--TSEEEEEEEEEEEETTEEEETTSSCCCGGGC
T ss_pred eEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhccccc--ceeeEEEEehhhhhHHHHHHHHHhccccccc
Confidence 99999999999999999975433335679999999999999998753 6799999999999999999999753 469
Q ss_pred eEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------------ceeEEEEeE------------------Eee
Q psy23 188 RVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------------NNICFSFLQ------------------VHG 237 (386)
Q Consensus 188 ~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------------~h~i~~l~~------------------~~s 237 (386)
.+++|++++++|.|++++.|.+++|++++|..|.++|. +|+||++.. ..|
T Consensus 164 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~s 243 (344)
T 4a14_A 164 QLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVS 243 (344)
T ss_dssp EEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEE
T ss_pred eeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeee
Confidence 99999999999999999999999999999999987764 599999921 358
Q ss_pred eEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcC---CCcccCCCCccccccccccCCCCCeEEEEE
Q psy23 238 KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK---GAHLPFRASKLTQVLRDSFIGDKSRTCMIA 314 (386)
Q Consensus 238 ~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~---~~~vPyRdSkLT~lL~d~llggns~t~~I~ 314 (386)
+|+|||||||||..++++. +.+++|+..||+||++|++||.+|+++ ..||||||||||+||||+ |||||+|+||+
T Consensus 244 kl~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqds-LgGnskt~mI~ 321 (344)
T 4a14_A 244 KFHFVDLAGSERVLKTGST-GERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDS-LGGNAKTVMIA 321 (344)
T ss_dssp EEEEEECCCCCCC---------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTS-SSTTSEEEEEE
T ss_pred eeeEEecccchhhcccCCc-hhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhh-cCCCcceEEEE
Confidence 9999999999999888654 567789999999999999999999863 469999999999999999 59999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhc
Q psy23 315 MISPGMSSCEHSLNTLRYADRVK 337 (386)
Q Consensus 315 ~vsp~~~~~~eTl~TL~fa~r~~ 337 (386)
||||+..+++||++||+||+|||
T Consensus 322 ~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 322 CVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC
T ss_pred EeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999986
No 14
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.4e-75 Score=568.06 Aligned_cols=261 Identities=35% Similarity=0.500 Sum_probs=241.0
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
.++.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+... ...+|||||++++||+.
T Consensus 42 ~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~---~~~~Giipr~~~~lF~~ 118 (325)
T 1bg2_A 42 ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHD---PEGMGIIPRIVQDIFNY 118 (325)
T ss_dssp TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTC---TTTBCHHHHHHHHHHHH
T ss_pred CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCC---cccCccHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999997432 34679999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccc-cccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAE-KAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------ 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~-~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------ 225 (386)
+.... .++.|.|++||+|||||+|+|||++ +..+.++++++++++|.|++++.|.+++|++++|..|.++|.
T Consensus 119 i~~~~-~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 197 (325)
T 1bg2_A 119 IYSMD-ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNM 197 (325)
T ss_dssp HHHHC-SSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCH
T ss_pred HHhcc-CCceEEEEEEEEEEecCeeeecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCC
Confidence 97543 4689999999999999999999986 457999999999999999999999999999999999988775
Q ss_pred ------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCccc
Q psy23 226 ------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLP 289 (386)
Q Consensus 226 ------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vP 289 (386)
+|+||++. ...|+|+|||||||||..+++.. +.+++|+..||+||++|++||.+|++++.|||
T Consensus 198 N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvP 276 (325)
T 1bg2_A 198 NEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAE-GAVLDEAKNINKSLSALGNVISALAEGSTYVP 276 (325)
T ss_dssp HHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSSS-CTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCC
T ss_pred CCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCcccccCCc-cccchHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 59999993 24689999999999999888654 56778999999999999999999999999999
Q ss_pred CCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 290 FRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 290 yRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
|||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 277 yRdSkLT~lLqds-LgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 277 YRDSKMTRILQDS-LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp GGGSHHHHHGGGT-SSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred ccccHHHHHHHHH-hCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 9999999999999 699999999999999999999999999999999986
No 15
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=5e-75 Score=574.83 Aligned_cols=278 Identities=41% Similarity=0.607 Sum_probs=231.3
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhc-CcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFE-GGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~-G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
.+.|.||+||+++++|++||+.+++|+|+++++ |||+||||||||||||||||+|+... .....+|||||++++||+.
T Consensus 49 ~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~-~~~~~~Giipr~~~~lF~~ 127 (360)
T 1ry6_A 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY-GQSDTPGIFQYAAGDIFTF 127 (360)
T ss_dssp EEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSST-TTSSCBCHHHHHHHHHHHH
T ss_pred cceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCC-CCccCCCcHHHHHHHHHHH
Confidence 357999999999999999999999999999996 99999999999999999999997421 1235789999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------- 225 (386)
++... .+..|.|++||+|||||+|+|||+++..+.++++++++++|.|++++.|.+++|++.+|..|..+|.
T Consensus 128 i~~~~-~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N 206 (360)
T 1ry6_A 128 LNIYD-KDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQN 206 (360)
T ss_dssp HHHHC-SSSCEEEEEEEEEEETTEEEESCCC-----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCT
T ss_pred HHhhc-cCCceEEEEEEEEeeCCeeEEcccCCccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhccccccc
Confidence 97543 3568999999999999999999999888899999999999999999999999999999999976654
Q ss_pred -----ceeEEEEe-------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCC
Q psy23 226 -----NNICFSFL-------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRAS 293 (386)
Q Consensus 226 -----~h~i~~l~-------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdS 293 (386)
+|+||++. ...|+|+|||||||||..++++.++++++|+..||+||++|++||.+|++++.|||||||
T Consensus 207 ~~SSRSH~if~i~v~~~~~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdS 286 (360)
T 1ry6_A 207 DESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDS 286 (360)
T ss_dssp TGGGGSEEEEEEEEEETTTTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGC
T ss_pred CCCccceEEEEEEEEeccCCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccC
Confidence 59999993 346999999999999998887777778889999999999999999999999999999999
Q ss_pred ccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCchhh
Q psy23 294 KLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTII 354 (386)
Q Consensus 294 kLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~~~ 354 (386)
|||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+|.|..+.+.....+
T Consensus 287 kLT~lLqds-LgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~~~~n~~~ 346 (360)
T 1ry6_A 287 ELTKVLRDI-FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLL 346 (360)
T ss_dssp HHHHHTGGG-GSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHH-hCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCCCCcchhh
Confidence 999999999 599999999999999999999999999999999999998777665544443
No 16
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.1e-74 Score=571.99 Aligned_cols=258 Identities=35% Similarity=0.537 Sum_probs=221.1
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
.+..|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.
T Consensus 70 ~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~------~~~Giipr~~~~lf~~ 143 (355)
T 3lre_A 70 KDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA------DEPGVMYLTMLHLYKC 143 (355)
T ss_dssp CCEEEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS------SSBCHHHHHHHHHHHH
T ss_pred CCceEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC------CCCCeeehhhhHHHHh
Confidence 4568999999999999999999999999999999999999999999999999999973 3689999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------- 225 (386)
+++.. ....|.|.+||+|||||+|+|||++..++.+++|++++++|.|++++.|.+++|++.+|..|.++|.
T Consensus 144 i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N 222 (355)
T 3lre_A 144 MDEIK-EEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMN 222 (355)
T ss_dssp HHHTT-TTEEEEEEEEEEEEETTEEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----
T ss_pred hhhhc-cCceEEEEEEEEEEECCEEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCc
Confidence 98754 3568999999999999999999999999999999999999999999999999999999999988776
Q ss_pred -----ceeEEEEeE-------------EeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcC---
Q psy23 226 -----NNICFSFLQ-------------VHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK--- 284 (386)
Q Consensus 226 -----~h~i~~l~~-------------~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~--- 284 (386)
+|+||++.. ..|+|+|||||||||..++++ .+.+++|+..||+||++|++||.+|+++
T Consensus 223 ~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~ 301 (355)
T 3lre_A 223 ATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGA-KGTRFVEGTNINRSLLALGNVINALADSKRK 301 (355)
T ss_dssp CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC------------------CHHHHHHHHHHHHHC-----
T ss_pred CCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 599999932 248999999999999888764 4567889999999999999999999874
Q ss_pred CCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 285 GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 285 ~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 302 ~~hiPyRdSkLT~lL~ds-LgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 302 NQHIPYRNSKLTRLLKDS-LGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp ---CCGGGSHHHHHTTTT-SSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CCcCCcccCHHHHHHHHh-cCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999 599999999999999999999999999999999986
No 17
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.6e-74 Score=583.35 Aligned_cols=268 Identities=33% Similarity=0.472 Sum_probs=230.0
Q ss_pred CCceeeeeEEcCC-------CCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhh
Q psy23 73 GNKLSRCWKVLSL-------KNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMA 145 (386)
Q Consensus 73 ~~~~f~fd~vf~~-------~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~ 145 (386)
.++.|.||+||++ .++|++||+.+++|+|+++|+|||+||||||||||||||||+|+. .++|||||+
T Consensus 94 ~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~------~~~GIipr~ 167 (443)
T 2owm_A 94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP------DQPGLIPRT 167 (443)
T ss_dssp CCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT------TSCCHHHHH
T ss_pred CCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC------CCCchHHHH
Confidence 4678999999975 489999999999999999999999999999999999999999973 368999999
Q ss_pred HHHHHHHhcCCC--CCCceeeEEEEEEEEEcCeeeeccccc------ccceEEEcCCCceEEeccEEEEeCCHHHHHHHH
Q psy23 146 AKDVFKLLKSPK--YRGLNLHVSASFFEIYSGKVFDLLAEK------AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLI 217 (386)
Q Consensus 146 ~~~LF~~~~~~~--~~~~~~~v~vS~~EIyne~v~DLL~~~------~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll 217 (386)
+++||+.++... ..++.|.|++||+|||||+|+|||++. ..+.++||+.++++|.|++++.|.+++|++++|
T Consensus 168 ~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll 247 (443)
T 2owm_A 168 CEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWM 247 (443)
T ss_dssp HHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHH
Confidence 999999997542 246899999999999999999999862 248999999999999999999999999999999
Q ss_pred Hhcccccc------------ceeEEEEe--------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhH
Q psy23 218 QHGNSASI------------NNICFSFL--------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSL 271 (386)
Q Consensus 218 ~~g~~~r~------------~h~i~~l~--------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL 271 (386)
..|.++|. +|+||+|. ...|+|+|||||||||..+++. .+.+++|+.+||+||
T Consensus 248 ~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~-~g~rlkE~~~INkSL 326 (443)
T 2owm_A 248 RIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEA-TGQRLREGSNINKSL 326 (443)
T ss_dssp HHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC---------------CCSSHHH
T ss_pred HHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCC-ccccccchhhhcHHH
Confidence 99988776 59999982 1358999999999999888754 456788999999999
Q ss_pred HHHHHHHHHHhcCC----------------------CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q psy23 272 LALKECIRALGRKG----------------------AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNT 329 (386)
Q Consensus 272 ~aL~~vI~aL~~~~----------------------~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~T 329 (386)
++|++||.+|++++ .||||||||||+||||+ |||||+|+||+||||+ +++||++|
T Consensus 327 ~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqds-LgGnskT~mIa~iSP~--~~~ETlsT 403 (443)
T 2owm_A 327 TTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDS-LGGNSKTAMIACISPT--DYDETLST 403 (443)
T ss_dssp HHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTT-TTSSCEEEEEEEECSS--CHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHh-hCCCCcEEEEEEeccc--cHHHHHHH
Confidence 99999999998743 38999999999999999 6999999999999996 59999999
Q ss_pred HHHHHHhcccccCCCCCCCCC
Q psy23 330 LRYADRVKELAATDPTEGPPP 350 (386)
Q Consensus 330 L~fa~r~~~i~~~~~~~~~~~ 350 (386)
|+||+|||+|+|.|++|+..+
T Consensus 404 LrfA~rak~I~n~~~vN~~d~ 424 (443)
T 2owm_A 404 LRYADQAKRIRTRAVVNQVDG 424 (443)
T ss_dssp HHHHHHHTTCEECCCCCCC--
T ss_pred HHHHHHHhhccccceecccCC
Confidence 999999999999999998443
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=8.4e-74 Score=560.72 Aligned_cols=259 Identities=33% Similarity=0.467 Sum_probs=229.7
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||+||+++++|++||+. ++|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.
T Consensus 46 ~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~------~~~Giipr~~~~lF~~ 118 (330)
T 2h58_A 46 KPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA------ENPGINQRALQLLFSE 118 (330)
T ss_dssp EEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCS------SSBCHHHHHHHHHHHH
T ss_pred CeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEEEEEeECCCCCCCcEEEecCC------CCCcHHHHHHHHHHHh
Confidence 34689999999999999999998 5899999999999999999999999999999973 3689999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccccc--c--ceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc---
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA--K--LRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI--- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~--~--l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~--- 225 (386)
++... .++.|.|++||+|||||+|+|||++.+ + +++++|++++++|.|++++.|.|++|++++|..|.++|.
T Consensus 119 i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~ 197 (330)
T 2h58_A 119 VQEKA-SDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEF 197 (330)
T ss_dssp HHTSC-TTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTT
T ss_pred hhccc-CCceEEEEEEEEEEECCChhhcccccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCccc
Confidence 98754 468999999999999999999998643 3 445568889999999999999999999999999987765
Q ss_pred ---------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCC
Q psy23 226 ---------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA 286 (386)
Q Consensus 226 ---------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~ 286 (386)
+|+||++. ...|+|+|||||||||..++++. +.+++|+..||+||++|++||.+|++++.
T Consensus 198 T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~r~~E~~~IN~SL~aLg~vI~aL~~~~~ 276 (330)
T 2h58_A 198 TNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAE-GSRLREAQHINKSLSALGDVIAALRSRQG 276 (330)
T ss_dssp CCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCCCCCcccccCCc-hhhhHHHHHhhHhHHHHHHHHHHHhcCCC
Confidence 59999993 34689999999999999888654 56788999999999999999999999999
Q ss_pred cccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc
Q psy23 287 HLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAA 341 (386)
Q Consensus 287 ~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~ 341 (386)
||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+.
T Consensus 277 hvPyRdSkLT~lL~ds-LgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~~ 330 (330)
T 2h58_A 277 HVPFRNSKLTYLLQDS-LSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330 (330)
T ss_dssp CCCGGGSHHHHHTHHH-HSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC----
T ss_pred CCcccccHHHHHHHHH-hCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCcC
Confidence 9999999999999999 59999999999999999999999999999999999863
No 19
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-73 Score=567.45 Aligned_cols=262 Identities=31% Similarity=0.405 Sum_probs=217.9
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.||+||+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|+... ....+|||||++++||+.+
T Consensus 82 ~~~F~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~--~~~~~Giipr~~~~lF~~i 158 (376)
T 2rep_A 82 RHDFSFDRVFPPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG--DPQLEGLIPRALRHLFSVA 158 (376)
T ss_dssp -CEEECSEEECTTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSC--CGGGBCHHHHHHHHHHHHH
T ss_pred ceeeeecEEcCCcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCC--CcccCCcHHHHHHHHHHHH
Confidence 35799999999999999999985 69999999999999999999999999999997432 2457899999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeeccccc------ccceEEEc--CCCceEEeccEEEEeCCHHHHHHHHHhcccccc
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEK------AKLRVLED--GKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~------~~l~i~ed--~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~ 225 (386)
+.....++.|.|++||+|||||+|+|||++. .++.++++ +.++++|.|++++.|.+++|++.+|..|.++|.
T Consensus 159 ~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~ 238 (376)
T 2rep_A 159 QELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRA 238 (376)
T ss_dssp HHGGGGTEEEEEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCeEEEEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcc
Confidence 8766567899999999999999999999874 35788888 678999999999999999999999999987765
Q ss_pred ------------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcch---hhhHHHHHHhhHhHHHHHHHHHH
Q psy23 226 ------------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSAN---RQTRMEGAEINKSLLALKECIRA 280 (386)
Q Consensus 226 ------------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~---~~~~~E~~~IN~SL~aL~~vI~a 280 (386)
+|+||++. ...|+|+|||||||||..++++.+ +.+++|+..||+||++|++||.+
T Consensus 239 ~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~a 318 (376)
T 2rep_A 239 VARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMA 318 (376)
T ss_dssp HCC-----CGGGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHH
T ss_pred cccccCCCCCCCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHH
Confidence 59999993 245899999999999998876543 27788999999999999999999
Q ss_pred HhcCCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 281 LGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 281 L~~~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
|++++.||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|++++
T Consensus 319 L~~~~~hVPYRdSkLT~LLqds-LgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 319 LSNKESHVPYRNSKLTYLLQNS-LGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHTTCSCCCGGGSHHHHHTGGG-TSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HhcCCCccCCcCCHHHHHHHHh-hCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999 699999999999999999999999999999999874
No 20
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.1e-73 Score=563.49 Aligned_cols=260 Identities=32% Similarity=0.443 Sum_probs=231.5
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+
T Consensus 51 ~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--------~~Giipr~~~~lF~~i 121 (347)
T 1f9v_A 51 VHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--------GDGIIPSTISHIFNWI 121 (347)
T ss_dssp EEEEEESEEECTTCCHHHHHHH-HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--------TTSHHHHHHHHHHHHH
T ss_pred ceEEeeCEEECCCCCHHHHHHH-HHHHHHHhcCCceeEEEEECCCCCCCcEeccCC--------CCCchHHHHHHHHHHH
Confidence 4689999999999999999998 579999999999999999999999999999995 4799999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccccc----------cceEEEc-CCCceEEeccEEEEeCCHHHHHHHHHhccc
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----------KLRVLED-GKQQVQIVGLTEQVVDSVEEVLKLIQHGNS 222 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~----------~l~i~ed-~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~ 222 (386)
+.....++.|.|++||+|||||+|+|||++.. ++.++++ +.++++|.|++++.|.+++|++.+|..|.+
T Consensus 122 ~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~ 201 (347)
T 1f9v_A 122 NKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANK 201 (347)
T ss_dssp HHHGGGTCEEEEEEEEEEEETTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-
T ss_pred HhhhhcCCceEEEEEEEEEECCeeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHh
Confidence 87655678999999999999999999998653 3667766 467899999999999999999999999987
Q ss_pred ccc------------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHH
Q psy23 223 ASI------------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRA 280 (386)
Q Consensus 223 ~r~------------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~a 280 (386)
+|. +|+||++. ...|+|+|||||||||..+++.. +.+++|+..||+||++|++||.+
T Consensus 202 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~a 280 (347)
T 1f9v_A 202 LRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVV-GDRLRETQNINKSLSCLGDVIHA 280 (347)
T ss_dssp ----------CCGGGSEEEEEEEEEEECC--CCEEEEEEEEEECCCCCCCCGGGCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeccCCCCCCCceEEEEEEEEEecCCCCceeeeEEEEEECCCCccccccccc-hhhhHHHHHHhHHHHHHHHHHHH
Confidence 775 59999993 24689999999999998887654 56788999999999999999999
Q ss_pred HhcCC---CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCC
Q psy23 281 LGRKG---AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDP 344 (386)
Q Consensus 281 L~~~~---~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~ 344 (386)
|++++ .||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|+++|+..+.
T Consensus 281 L~~~~~~~~hiPyRdSkLT~lLqds-LgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 281 LGQPDSTKRHIPFRNSKLTYLLQYS-LTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp HTSCC---CCCCGGGSHHHHHHHHH-HSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred HhcccCCCCcCccccCHHHHHHHHH-hCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99865 89999999999999999 59999999999999999999999999999999999998764
No 21
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=4.3e-73 Score=559.87 Aligned_cols=258 Identities=31% Similarity=0.418 Sum_probs=223.6
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhc
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLK 154 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~ 154 (386)
+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ .+|||||++++||+.++
T Consensus 53 ~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--------~~Giipr~~~~lF~~~~ 123 (349)
T 3t0q_A 53 YNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--------GDGMIPMTLSHIFKWTA 123 (349)
T ss_dssp EEEEESEEECTTCCHHHHHHH-HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--------TTSHHHHHHHHHHHHHH
T ss_pred eeeecCEEECCCccHHHHHHH-HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--------CCchhhHHHHHHHHHHH
Confidence 579999999999999999998 579999999999999999999999999999995 46999999999999998
Q ss_pred CCCCCCceeeEEEEEEEEEcCeeeeccccc------------ccceEEEcC-CCceEEeccEEEEeCCHHHHHHHHHhcc
Q psy23 155 SPKYRGLNLHVSASFFEIYSGKVFDLLAEK------------AKLRVLEDG-KQQVQIVGLTEQVVDSVEEVLKLIQHGN 221 (386)
Q Consensus 155 ~~~~~~~~~~v~vS~~EIyne~v~DLL~~~------------~~l~i~ed~-~~~~~v~~l~~~~V~s~~e~~~ll~~g~ 221 (386)
..+..++.|.|++||+|||||+|+|||.+. .++.+++++ .++++|.|++++.|.+++|++.+|..|.
T Consensus 124 ~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~ 203 (349)
T 3t0q_A 124 NLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKAS 203 (349)
T ss_dssp HHGGGTEEEEEEEEEEEEETTEEEETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC-
T ss_pred HhhhcCceeEEEEEEEEEEcchhhccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHH
Confidence 766667899999999999999999999753 356777765 5679999999999999999999999998
Q ss_pred cccc------------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHH
Q psy23 222 SASI------------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIR 279 (386)
Q Consensus 222 ~~r~------------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~ 279 (386)
++|. +|+||++. ...|+|+|||||||||..++++. +.+++|+.+||+||++|++||.
T Consensus 204 ~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~ 282 (349)
T 3t0q_A 204 KMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVT-GERLRETQNINKSLSCLGDVIY 282 (349)
T ss_dssp -----------CTGGGSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCC----C-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccccccccccCCcceEEEEEEEEEecCCCCeeEEEEEEEeCCCCCccccccCc-cccchhHHhhhHhHHHHHHHHH
Confidence 8775 59999993 34689999999999999888654 5678899999999999999999
Q ss_pred HHhcCC---CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCC
Q psy23 280 ALGRKG---AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATD 343 (386)
Q Consensus 280 aL~~~~---~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~ 343 (386)
+|++++ .||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|+++|+..+
T Consensus 283 aL~~~~~~~~hiPyRdSkLT~lLqds-LgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 283 ALNTPDAGKRYIPFRNSKLTYLLQYS-LVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp HHHSTTGGGSCCCGGGSHHHHHHGGG-SSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred HHhcccCCCCcCCCcCCHHHHHHHHh-cCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 998755 49999999999999999 6999999999999999999999999999999999999765
No 22
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2.4e-73 Score=559.72 Aligned_cols=305 Identities=24% Similarity=0.329 Sum_probs=240.8
Q ss_pred eeecCccCCeEEeeeeeeccCCCCCCCCCCCCccccCceeec--------CCCCceeeeeEEcCCCCChHHHHHhhhhHH
Q psy23 29 WFEKGETKGKEVELDALFSLNSNLMPKTNNENSQYNNCRSMP--------LSGNKLSRCWKVLSLKNTVPLDFRFSAKPL 100 (386)
Q Consensus 29 ~~~~~~~~gk~~~~~~i~~~n~~l~p~~~~~~~~~~~~~~~~--------~~~~~~f~fd~vf~~~~sq~~vf~~~~~pl 100 (386)
---+|...+|.-.+++++++.|- .+.+..... .+..++ ....+.|.||+||+++++|++||+.+++|+
T Consensus 11 ~~~r~m~~~~~~~VrV~vRvRP~-~~~e~~~~~---~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~pl 86 (344)
T 3dc4_A 11 KRRRGMEGAKLSAVRIAVREAPY-RQFLGRREP---SVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPL 86 (344)
T ss_dssp --------CCCSEEEEEEEECCC-C-------C---CSEECCSSSCSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred cccCCCCCCCCCCeEEEEECCCC-CcccccCCc---eEEEecCCCCCceEEecCcEEEcceEECCCCCHHHHHHhhccch
Confidence 33467777778889999999983 343322111 122222 124578999999999999999999999999
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhcCCCC-CCceeeEEEEEEEEEcCeeee
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY-RGLNLHVSASFFEIYSGKVFD 179 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~~~-~~~~~~v~vS~~EIyne~v~D 179 (386)
|+++++|||+||||||||||||||||+|+..+.....++|||||++++||+.++.... ....|.|++||+|||||+|+|
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~D 166 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFD 166 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEE
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEE
Confidence 9999999999999999999999999999765444456889999999999999975442 246799999999999999999
Q ss_pred cccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc------------ceeEEEEe----EEeeeEEEEe
Q psy23 180 LLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------------NNICFSFL----QVHGKFSLID 243 (386)
Q Consensus 180 LL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------------~h~i~~l~----~~~s~L~~VD 243 (386)
||++......... .+.+++++.|.+++|++.+|..|.++|. +|+||++. ...|+|+|||
T Consensus 167 LL~~~~~~~~~~~-----~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~skl~lVD 241 (344)
T 3dc4_A 167 LLGSTPHMPMVAA-----RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVD 241 (344)
T ss_dssp TTSSCTTSBCCSS-----TTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECSSCEEEEEEEE
T ss_pred ccCCCCCCccccc-----cccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEecCcEEEEEEEE
Confidence 9987664332221 2348899999999999999999988776 59999994 3569999999
Q ss_pred CCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCH
Q psy23 244 LAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSC 323 (386)
Q Consensus 244 LAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~ 323 (386)
||||||..++++ .+.+++|+..||+||++|++||.+|++++.||||||||||+||||+ |||||+|+||+||||+..++
T Consensus 242 LAGSEr~~~t~~-~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqds-LgGnskt~mIa~isP~~~~~ 319 (344)
T 3dc4_A 242 LAGSEGVRRTGH-EGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQAS-LTAQSYLTFLACISPHQCDL 319 (344)
T ss_dssp CCCCCCC--------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTT-SSTTCEEEEEEEECCCGGGH
T ss_pred CCCCcccccccc-ccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHH-hCCCCEEEEEEEeCCchhhH
Confidence 999999888764 4567889999999999999999999999999999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCC
Q psy23 324 EHSLNTLRYADRVKELAATDP 344 (386)
Q Consensus 324 ~eTl~TL~fa~r~~~i~~~~~ 344 (386)
+||++||+||+||++.+..|.
T Consensus 320 ~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 320 SETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999887654
No 23
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.8e-73 Score=561.94 Aligned_cols=258 Identities=35% Similarity=0.511 Sum_probs=223.9
Q ss_pred CCceeeeeEEc--------CCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhh
Q psy23 73 GNKLSRCWKVL--------SLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAM 144 (386)
Q Consensus 73 ~~~~f~fd~vf--------~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r 144 (386)
..+.|.||+|| ++.++|++||+.+++|+|+++++|||+||||||||||||||||+|+. .++|||||
T Consensus 49 ~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~------~~~Giipr 122 (354)
T 3gbj_A 49 QPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA------DQPGLIPR 122 (354)
T ss_dssp CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS------SSBCHHHH
T ss_pred CceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC------CCCchhhH
Confidence 35789999999 56789999999999999999999999999999999999999999973 37899999
Q ss_pred hHHHHHHHhcCCCCCCceeeEEEEEEEEEcCeeeeccccc---ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcc
Q psy23 145 AAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK---AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGN 221 (386)
Q Consensus 145 ~~~~LF~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~---~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~ 221 (386)
++++||+.++.....++.|.|++||+|||||+|+|||++. ..+.++|++..+++|.|++++.|.+++|++.+|..|.
T Consensus 123 ~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~ 202 (354)
T 3gbj_A 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGN 202 (354)
T ss_dssp HHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHH
Confidence 9999999997655567899999999999999999999864 4699999999999999999999999999999999998
Q ss_pred cccc------------ceeEEEEe--------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHH
Q psy23 222 SASI------------NNICFSFL--------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALK 275 (386)
Q Consensus 222 ~~r~------------~h~i~~l~--------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~ 275 (386)
++|. +|+||++. ...|+|+|||||||||..++++. +.+++|+..||+||++|+
T Consensus 203 ~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg 281 (354)
T 3gbj_A 203 KSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAA-GDRLKEGSNINKSLTTLG 281 (354)
T ss_dssp HCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC-------CHHHHHHHHHHHHH
T ss_pred hcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCc-cccchhHHHhhHHHHHHH
Confidence 8875 59999982 24589999999999999888654 567789999999999999
Q ss_pred HHHHHHhc------CCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Q psy23 276 ECIRALGR------KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKE 338 (386)
Q Consensus 276 ~vI~aL~~------~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~ 338 (386)
+||.+|++ +..||||||||||+||||+ |||||+|+||+||||+..+++||++|||||+||+.
T Consensus 282 ~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqds-LgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 282 LVISALADQSAGKNKNKFVPYRDSVLTWLLKDS-LGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHHHHHC------CCCCCGGGSHHHHHTHHH-HSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhcccCCCCcccccccHHHHHHHHH-hCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999986 4579999999999999999 59999999999999999999999999999999984
No 24
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-73 Score=561.59 Aligned_cols=256 Identities=33% Similarity=0.500 Sum_probs=216.0
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhc
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLK 154 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~ 154 (386)
..|.||+||+ +++|++||+.+++|+|+++|+|||+||||||||||||||||+|+.. ...++|||||++++||+.++
T Consensus 72 ~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~---~~~~~Giipra~~~lF~~~~ 147 (359)
T 3nwn_A 72 WSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATE---NYKHRGILPRALQQVFRMIE 147 (359)
T ss_dssp EEEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSS---CGGGBCHHHHHHHHHHHHHH
T ss_pred eEeecCccCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccC---CccchhhHHHHHHHHHHHhh
Confidence 4699999997 6899999999999999999999999999999999999999999743 24568999999999999998
Q ss_pred CCCCCCceeeEEEEEEEEEcCeeeeccccc-------ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--
Q psy23 155 SPKYRGLNLHVSASFFEIYSGKVFDLLAEK-------AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-- 225 (386)
Q Consensus 155 ~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-------~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-- 225 (386)
..+ ++.|.|++||+|||||+|+|||++. ..+.+++++. ++++.|++++.|.+++|++.++..|..+|.
T Consensus 148 ~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~ 224 (359)
T 3nwn_A 148 ERP--THAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIA 224 (359)
T ss_dssp TCT--TSCEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cCC--CCcEEEEEEEEEEeccccccccccccccccccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccc
Confidence 754 6789999999999999999999853 2466777765 799999999999999999999999987765
Q ss_pred ----------ceeEEEEe------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhc
Q psy23 226 ----------NNICFSFL------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR 283 (386)
Q Consensus 226 ----------~h~i~~l~------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~ 283 (386)
+|++|++. ...|+|+|||||||||..++++ .+.+++|+..||+||++|++||.+|++
T Consensus 225 ~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~-~g~rl~E~~~IN~SL~~Lg~vI~aL~~ 303 (359)
T 3nwn_A 225 SHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGS-EGQVLKEATYINKSLSFLEQAIIALGD 303 (359)
T ss_dssp HHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC-----------------CCSTHHHHHHHHHHHHHC
T ss_pred cccCccccCcceEEEEEEEEeecccccCcccccccceeeeccccccccccCC-chhHHHhhhhhcccHHHHHHHHHHHHh
Confidence 59999993 2458999999999999888764 456788999999999999999999997
Q ss_pred -CCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 284 -KGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 284 -~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
+..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 304 ~~~~hVPYRdSkLT~lLqds-LgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 304 QKRDHIPFRQCKLTHALKDS-LGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp -----CCGGGSHHHHHTHHH-HSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred cCCCcCCcccCHHHHHHHHh-cCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 4579999999999999999 599999999999999999999999999999999986
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-72 Score=560.51 Aligned_cols=259 Identities=33% Similarity=0.454 Sum_probs=229.2
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHhc
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLK 154 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~ 154 (386)
+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ .+|||||++++||..++
T Consensus 108 ~~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--------~~Giipr~~~~lF~~i~ 178 (403)
T 4etp_A 108 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--------GDGIIPSTISHIFNWIN 178 (403)
T ss_dssp EEEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--------TTSHHHHHHHHHHHHHH
T ss_pred eEEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--------CCccchhHHHHHHHHHH
Confidence 679999999999999999998 569999999999999999999999999999995 46999999999999998
Q ss_pred CCCCCCceeeEEEEEEEEEcCeeeecccccc----------cceEEEcC-CCceEEeccEEEEeCCHHHHHHHHHhcccc
Q psy23 155 SPKYRGLNLHVSASFFEIYSGKVFDLLAEKA----------KLRVLEDG-KQQVQIVGLTEQVVDSVEEVLKLIQHGNSA 223 (386)
Q Consensus 155 ~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~----------~l~i~ed~-~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~ 223 (386)
.....++.|.|++||+|||||+|+|||++.. ++.+++++ .++++|.|++++.|.+++|++.+|..|.++
T Consensus 179 ~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 258 (403)
T 4etp_A 179 KLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKL 258 (403)
T ss_dssp HHHTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--
T ss_pred hhhccCceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHh
Confidence 7655678999999999999999999998653 45677665 567999999999999999999999999988
Q ss_pred cc------------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHH
Q psy23 224 SI------------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL 281 (386)
Q Consensus 224 r~------------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL 281 (386)
|. +|+||++. ...|+|+|||||||||..++++. +.+++|+..||+||++|++||.+|
T Consensus 259 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL 337 (403)
T 4etp_A 259 RSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVV-GDRLRETQNINKSLSALGDVIHAL 337 (403)
T ss_dssp C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCCh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 59999992 34689999999999998888654 567889999999999999999999
Q ss_pred hcCC---CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCC
Q psy23 282 GRKG---AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDP 344 (386)
Q Consensus 282 ~~~~---~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~ 344 (386)
+++. .||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|+++++..|.
T Consensus 338 ~~~~~~~~hiPyRdSkLT~LLqds-LgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 338 GQPDSTKRHIPFRNSKLTYLLQYS-LTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp TSSCTTTSCCCGGGSHHHHHTGGG-TSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred hcccCCCCcCCcccchHHHHHHHh-cCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 8755 49999999999999999 59999999999999999999999999999999999998764
No 26
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.9e-72 Score=555.97 Aligned_cols=257 Identities=33% Similarity=0.500 Sum_probs=218.3
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
+..|.||+||+ +++|++||+.+++|+|+++++|||+||||||||||||||||+|+.+. ..++|||||++++||+.+
T Consensus 70 ~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~---~~~~Giipra~~~lF~~i 145 (358)
T 2nr8_A 70 DWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATEN---YKHRGILPRALQQVFRMI 145 (358)
T ss_dssp EEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSC---GGGBCHHHHHHHHHHHHH
T ss_pred ceEEECCeecC-CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccc---cccCCcHHHHHHHHHHHH
Confidence 35699999995 89999999999999999999999999999999999999999997432 346899999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeeccccc-------ccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEK-------AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-------~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~- 225 (386)
+... +..|.|++||+|||||+|+|||++. .++.+++++ .+++|.|++++.|.+++|++.+|..|.++|.
T Consensus 146 ~~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~ 222 (358)
T 2nr8_A 146 EERP--THAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRII 222 (358)
T ss_dssp HTCT--TSCEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHH
T ss_pred hhcC--CceEEEEEEEEEEeCCeeeECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhcccc
Confidence 8754 5689999999999999999999862 468899998 6799999999999999999999999987765
Q ss_pred -----------ceeEEEEe------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHh
Q psy23 226 -----------NNICFSFL------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG 282 (386)
Q Consensus 226 -----------~h~i~~l~------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~ 282 (386)
+|+||++. ...|+|+|||||||||..++++ .+.+++|+.+||+||++|++||.+|+
T Consensus 223 ~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aLg~vI~aL~ 301 (358)
T 2nr8_A 223 ASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGS-EGQVLKEATYINKSLSFLEQAIIALG 301 (358)
T ss_dssp HHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC-----------------CCSTHHHHHHHHHHHHH
T ss_pred ccccCCCCCCcCeEEEEEEEEEEeccCCCCCEEEEEEEEEECCCCCcccccCC-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999992 1368999999999999988864 45778899999999999999999998
Q ss_pred cC-CCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q psy23 283 RK-GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339 (386)
Q Consensus 283 ~~-~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i 339 (386)
++ ..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 302 ~~~~~hiPyRdSkLT~LLqds-LgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 302 DQKRDHIPFRQCKLTHALKDS-LGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp C-----CCGGGSHHHHHTHHH-HSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred hCCCCcCCCccCHHHHHHHHh-cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 74 579999999999999999 599999999999999999999999999999999986
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=4e-72 Score=562.63 Aligned_cols=261 Identities=28% Similarity=0.432 Sum_probs=227.4
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.+
T Consensus 105 ~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~------~~~Giipr~~~~lF~~i 177 (412)
T 3u06_A 105 QQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP------ESVGVIPRTVDLLFDSI 177 (412)
T ss_dssp CCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEET------TEECHHHHHHHHHHHHH
T ss_pred ceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCC------CCCccHHHHHHHHHHhh
Confidence 4689999999999999999985 6799999999999999999999999999999973 36899999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccccc-c--ceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-----
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKA-K--LRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI----- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-~--l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~----- 225 (386)
+..+..++.|.|++||+|||||+|+|||++.. + +++.++++++++|.|++++.|.+++|++.+|..|..+|.
T Consensus 178 ~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~ 257 (412)
T 3u06_A 178 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTA 257 (412)
T ss_dssp HHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----
T ss_pred hhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccC
Confidence 87655678999999999999999999998654 2 455577889999999999999999999999999987776
Q ss_pred -------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcc
Q psy23 226 -------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHL 288 (386)
Q Consensus 226 -------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~v 288 (386)
+|+||++. ...|+|+||||||||+... +.+++|+..||+||++|++||.+|++++.||
T Consensus 258 ~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~-----~~rl~E~~~INkSL~aLg~vI~aL~~~~~hi 332 (412)
T 3u06_A 258 GNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKT-----STRMTETKNINRSLSELTNVILALLQKQDHI 332 (412)
T ss_dssp CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC---------------CTTTHHHHHHHHHHHHHHTTCSCC
T ss_pred CCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCCc-----cchhHhHHHHhHHHHHHHHHHHHHhccCCCC
Confidence 59999993 3468999999999999643 3567899999999999999999999999999
Q ss_pred cCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q psy23 289 PFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEG 347 (386)
Q Consensus 289 PyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~ 347 (386)
||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|+++|+..+...+
T Consensus 333 PyRdSkLT~LLqds-LgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n 390 (412)
T 3u06_A 333 PYRNSKLTHLLMPS-LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390 (412)
T ss_dssp CGGGSHHHHHHGGG-TSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC------
T ss_pred CccccHHHHHHHHh-cCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999 59999999999999999999999999999999999997655544
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=8.1e-68 Score=567.93 Aligned_cols=257 Identities=31% Similarity=0.470 Sum_probs=224.0
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
++.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+
T Consensus 429 ~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--------~~Giipr~~~~lf~~~ 499 (715)
T 4h1g_A 429 NLRFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--------TNGMIPLSLKKIFNDI 499 (715)
T ss_dssp EEEEECSEEECSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--------TTSHHHHHHHHHHHHH
T ss_pred CeEEEeceEeCCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC--------CCCcHHHHHHHHHHHH
Confidence 4789999999999999999986 569999999999999999999999999999985 5799999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeeccccc----ccceEEEc-CCCceEEeccEEEEeCCHHHHHHHHHhcccccc---
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEK----AKLRVLED-GKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI--- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----~~l~i~ed-~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~--- 225 (386)
+..+.++..|.|++||+|||||+|+|||++. ..+.++++ ..++++|.|++++.|.|++|++++|..|.++|+
T Consensus 500 ~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~ 579 (715)
T 4h1g_A 500 EELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAA 579 (715)
T ss_dssp HHHGGGTEEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC-----
T ss_pred HHhhcCCceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCccc
Confidence 8766667899999999999999999999864 34666655 456699999999999999999999999988775
Q ss_pred ---------ceeEEEEe----------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhc-CC
Q psy23 226 ---------NNICFSFL----------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR-KG 285 (386)
Q Consensus 226 ---------~h~i~~l~----------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~-~~ 285 (386)
+|+||+|. ...|+|+|||||||||..++++ .+.+++|+..||+||++|++||.+|+. +.
T Consensus 580 t~~n~~ssRSH~i~~i~~~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~-~g~~~~E~~~IN~sL~~L~~vi~al~~~~~ 658 (715)
T 4h1g_A 580 TKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRA-EGDRLKETQAINKSLSCLGDVIHSLNLKDG 658 (715)
T ss_dssp -----CGGGSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC----------CHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ccccCccccccEEEEEEEEEEecCCCCEeEEEEEEEeCCCcccccccCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 59999992 3468999999999999888754 456788999999999999999999985 46
Q ss_pred CcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc
Q psy23 286 AHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAA 341 (386)
Q Consensus 286 ~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~ 341 (386)
.|||||||||||||||+ |||||+|+||+||||+..+++||++||+||+|||+|+.
T Consensus 659 ~~vpyR~SkLT~lL~~s-lggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 659 SHVPYRNSKLTYLLKHS-LGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp CCCCGGGCHHHHHTGGG-TSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred CcCCCccCHHHHHHHhh-cCCCceEEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 89999999999999999 59999999999999999999999999999999999973
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=2.6e-29 Score=203.34 Aligned_cols=93 Identities=30% Similarity=0.429 Sum_probs=86.3
Q ss_pred HHhhHhHHHHHHHHHHHhcC-CCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCC
Q psy23 265 AEINKSLLALKECIRALGRK-GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATD 343 (386)
Q Consensus 265 ~~IN~SL~aL~~vI~aL~~~-~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~ 343 (386)
.+||+||.+|++||.+|+++ ..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|+++|++.|
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~ds-LgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDS-LDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHH-HHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHH-hcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46999999999999999986 689999999999999999 5999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhcc
Q psy23 344 PTEGPPPPTIIQRQS 358 (386)
Q Consensus 344 ~~~~~~~~~~~~~~~ 358 (386)
.+|....+..+.+..
T Consensus 81 ~~n~~~~~~~l~~~~ 95 (100)
T 2kin_B 81 SVNLELTAEEWKKKY 95 (100)
T ss_dssp CCEEECCHHHHHHHH
T ss_pred eeccCCCHHHHHHHH
Confidence 999988777665543
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.92 E-value=1.9e-26 Score=192.49 Aligned_cols=89 Identities=31% Similarity=0.463 Sum_probs=83.1
Q ss_pred hHhHHHHHHHHHHHhcC-CCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCC
Q psy23 268 NKSLLALKECIRALGRK-GAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTE 346 (386)
Q Consensus 268 N~SL~aL~~vI~aL~~~-~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~ 346 (386)
|+||.+|++||.+|+++ ..||||||||||+||+|+ |||||+|+||+||||+..+++||++||+||+||++|++.|.+|
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~ds-Lggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n 79 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDS-LGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN 79 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHH-HHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHH-cCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceec
Confidence 78999999999999986 479999999999999999 5999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhc
Q psy23 347 GPPPPTIIQRQ 357 (386)
Q Consensus 347 ~~~~~~~~~~~ 357 (386)
.......+.+.
T Consensus 80 ~~~~~~~l~~~ 90 (117)
T 3kin_B 80 LELTAEEWKKK 90 (117)
T ss_dssp BCCCHHHHHHH
T ss_pred CcCCHHHHHHH
Confidence 98887665553
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5e-23 Score=193.41 Aligned_cols=258 Identities=9% Similarity=0.037 Sum_probs=162.1
Q ss_pred eeeeccCCCCCCCCCCCCccccCceeecCCCCceeeeeEEcCCCCChH--HHHHhhhhHHHHHHhc-CcCceeeeeccCC
Q psy23 43 DALFSLNSNLMPKTNNENSQYNNCRSMPLSGNKLSRCWKVLSLKNTVP--LDFRFSAKPLVKTIFE-GGMATCFAYGQTG 119 (386)
Q Consensus 43 ~~i~~~n~~l~p~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~sq~--~vf~~~~~plv~~~l~-G~n~ti~aYGqtg 119 (386)
.....++|.++|.... -.....|..... ..+.|.||+||++...|+ +||++ +.++|+.+++ |||+|||||||||
T Consensus 27 RVFcrvrp~~~p~~~~-v~y~~~~I~v~~-~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTG 103 (298)
T 2o0a_A 27 RCYAYVMEQNLPENLL-FDYENGVITQGL-SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTP 103 (298)
T ss_dssp EEEEEECGGGSCTTEE-EETTTTEEEETT-TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSC
T ss_pred EEEEEeccccCCccce-eecCccceeecC-CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCC
Confidence 3445566766662210 111123433322 447899999999999999 99999 7999999999 9999999999999
Q ss_pred CCCceeeccCCCCCCcccccchhhhhHHHHHHHhcCCCCCCceeeEEEEEEEEE-cCeeeecccccc---cceEEEcCCC
Q psy23 120 SGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKYRGLNLHVSASFFEIY-SGKVFDLLAEKA---KLRVLEDGKQ 195 (386)
Q Consensus 120 SGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~~~~~~~~~~~~v~vS~~EIy-ne~v~DLL~~~~---~l~i~ed~~~ 195 (386)
|||| ||++..+|...+... .++|.+.+||+||| ||.++|||...+ +..++.+.++
T Consensus 104 sGKT-------------------~ral~q~f~~~~~~~--~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g 162 (298)
T 2o0a_A 104 HGSL-------------------RESLIKFLAEKDTIY--QKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEK 162 (298)
T ss_dssp CHHH-------------------HHHHHHHHHSTTSHH--HHHEEEEEEEEEEECC-CEEETTSCCC------CEEEECS
T ss_pred CCcc-------------------HHHHHHHHHHhhhhc--ccceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCC
Confidence 9999 889999999664311 18999999999999 999999996322 4577777889
Q ss_pred ceEEeccEEEEeCC-HHHHHHHHHhccccccceeEEEEeEEeeeEEEEe----CCCCCCCCcCCcchhhhHHHHHHhhHh
Q psy23 196 QVQIVGLTEQVVDS-VEEVLKLIQHGNSASINNICFSFLQVHGKFSLID----LAGNERGADTSSANRQTRMEGAEINKS 270 (386)
Q Consensus 196 ~~~v~~l~~~~V~s-~~e~~~ll~~g~~~r~~h~i~~l~~~~s~L~~VD----LAGsEr~~~~~~~~~~~~~E~~~IN~S 270 (386)
...+.|++.+.|.+ ++|+..++..+.....+|.-+. ..++.|-+ |-|-|..... + -...|.. =-++
T Consensus 163 ~~iv~~s~~i~V~~~~edv~~~~~~~~~~~~~~~gi~----i~k~~~~~~~~~~~~~~~~~~~---d-~yf~e~~-~~~~ 233 (298)
T 2o0a_A 163 HSISLDSKLVIIENGLEDLPLNFSCDEHPNLPHSGMG----IIKVQFFPRDSKSDGNNDPVPV---D-FYFIELN-NLKS 233 (298)
T ss_dssp SCEEEESCCEEESSGGGGSCTTTTCC-------CEEE----EEEEEEEESCC-------CCCE---E-EEEEEEC-SHHH
T ss_pred CEEecccEEEEccccHHHHHHHhhcccccccCCCCce----EEEEEEecCcccccccCCCCce---E-EEEEEeC-CHHH
Confidence 99999999999999 9999988855544444432111 22333333 1111000000 0 0000000 0011
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCC
Q psy23 271 LLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTE 346 (386)
Q Consensus 271 L~aL~~vI~aL~~~~~~vPyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~ 346 (386)
+..|.+ ++..+ .+-.|+++-+|+..| - ..+.++++++.-. .+.-..|..++++.+++|++..+
T Consensus 234 ~~~l~~---~~~~~----~~~~spi~~il~~ll-~-~tks~~~~~l~~~----~~~~~lL~~s~~i~~~~~~~~~~ 296 (298)
T 2o0a_A 234 IEQFDK---SIFKK----ESCETPIALVLKKLI-S-DTKSFFLLNLNDS----KNVNKLLTISEEVQTQLCKRKKK 296 (298)
T ss_dssp HHHHHH---HHHTC-----CCCSHHHHHHHHHH-H-HSBCEEEEEECCG----GGHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHh---hcccc----cccCCcHHHHHHHHH-h-cCcceEEEEecCC----CchhHHHHHHHHhhcccCccccc
Confidence 233333 22222 345788899998775 3 4789999999643 23334799999999999987654
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.38 E-value=0.012 Score=50.98 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=33.1
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++||.+...+..|+++++.. ..+++++-..-...++-||++|+|||+.+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 356777666555677776543 44454443333456788999999999986
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.87 E-value=0.032 Score=48.95 Aligned_cols=49 Identities=22% Similarity=0.174 Sum_probs=29.9
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcC-ceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGM-ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n-~ti~aYGqtgSGKT~Tm 126 (386)
+.||.+...+..+.++++. +..+++..-.+.. ..++-||++|+|||+.+
T Consensus 22 ~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred CCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4566555444455566663 2334433323222 67899999999999975
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.66 E-value=0.051 Score=51.73 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=30.2
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
..||.+...+..+..+++ .+..+++..-.+....++-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 456554433334444555 33344444333335678899999999999874
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.45 E-value=0.17 Score=42.65 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=22.7
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..+++.+..+....++-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 344555555566677899999999999876
No 36
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.41 E-value=0.25 Score=45.13 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=30.9
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHH-HHHh----cCcCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLV-KTIF----EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv-~~~l----~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+.|+.+.+.+...+.+.+. +..+- ...+ ......++-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 45778888877666665543 22111 0111 122445899999999999976
No 37
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.41 E-value=0.2 Score=42.24 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=22.5
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..+++.+..+....++-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 344555555566778899999999999875
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.28 E-value=0.23 Score=46.64 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=25.7
Q ss_pred hHHHHHhhhhHHHHHHhc--CcC--ceeeeeccCCCCCceee
Q psy23 89 VPLDFRFSAKPLVKTIFE--GGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 89 q~~vf~~~~~plv~~~l~--G~n--~ti~aYGqtgSGKT~Tm 126 (386)
.+.+.+.++..++...+. |.. ..++-||++|+|||+..
T Consensus 12 ~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 12 APAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 345556666666666553 222 35788999999999865
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.63 E-value=0.28 Score=44.77 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=21.9
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
|.|+.+.+.+..-..+.+ .+..+.. .+..|+-||++|+|||+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~-----~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLE-----QVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCHHHHHHHH-----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCHHHHHHHH-----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 567777764433333322 2223222 3467889999999999865
No 40
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.32 E-value=0.33 Score=40.85 Aligned_cols=18 Identities=28% Similarity=0.732 Sum_probs=14.9
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..++-+|++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 456779999999999863
No 41
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.73 E-value=0.27 Score=47.17 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=21.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+-..+-.|...+++-||++|+|||.++
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333444677789999999999999875
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.77 E-value=0.36 Score=45.47 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=28.4
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.|.||.++. ...+...+.. +..+++.-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 467777653 2334444443 232332211 123568899999999999863
No 43
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.46 E-value=0.2 Score=45.43 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=27.7
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHH-HHHhcCc----CceeeeeccCCCCCceee
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLV-KTIFEGG----MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv-~~~l~G~----n~ti~aYGqtgSGKT~Tm 126 (386)
..+.|+.+.+.+....++-+ +...+- ..++++. ...++-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34677777665433333322 211110 1223322 223899999999999876
No 44
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.35 E-value=0.27 Score=45.22 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=31.0
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHH-----HHhcCcCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVK-----TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~-----~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+.|+.+.+.+..-+.+.+.+..++.. ..--.....++-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 466777776555555555544333221 111134456899999999999865
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.14 E-value=0.28 Score=46.05 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=30.5
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHH-HHhc----CcCceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVK-TIFE----GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~----G~n~ti~aYGqtgSGKT~Tm 126 (386)
..|+.+.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 45666666555555555554444321 1111 23456899999999999875
No 46
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.34 E-value=0.63 Score=40.03 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+-...++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343345999999999999875
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=79.71 E-value=0.71 Score=40.58 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=16.9
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
+....++-||++|+|||+.+
T Consensus 50 ~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 35677899999999999975
No 48
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=79.10 E-value=0.66 Score=40.82 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=19.4
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..+++|.+ ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556678866 68899999999987
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.54 E-value=0.38 Score=44.59 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=30.4
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHH-HHhcC---cCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVK-TIFEG---GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G---~n~ti~aYGqtgSGKT~Tm 126 (386)
...|+.+.+.+..-+.+.+.+..|+.. ..+.| ....++-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 346677766554444444444443321 11122 3567899999999999865
No 50
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.46 E-value=0.89 Score=39.34 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++.+++|.+ ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4556677755 678899999999654
No 51
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.00 E-value=0.77 Score=39.72 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=18.7
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..+++|.+ ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 4456677765 67789999999987
No 52
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.94 E-value=1 Score=41.21 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.9
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999875
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=77.86 E-value=0.64 Score=43.83 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=28.0
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+.|+.+++. +.+.+. +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 45677777664 333222 233344444456999999999999875
No 54
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.79 E-value=0.74 Score=45.73 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=22.5
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++++.++..-...++..|+||||||.+|.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 45666666556678889999999999873
No 55
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=77.57 E-value=0.36 Score=44.55 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=13.9
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
++-||++|+|||+.+
T Consensus 76 vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcChHHHHH
Confidence 899999999999876
No 56
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.23 E-value=0.4 Score=46.26 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=30.6
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHHHH----hcCcCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVKTI----FEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~~~----l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
...|+.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 45667776654444444444433332111 2344567999999999999875
No 57
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.20 E-value=7.7 Score=36.86 Aligned_cols=97 Identities=9% Similarity=0.057 Sum_probs=67.6
Q ss_pred CceeecCCCCceeeeeEEcCCCC-ChHHHHHhhhhHHHHHHh-cCcCceeeeeccCCCCCceeeccCCCCCCcccccchh
Q psy23 65 NCRSMPLSGNKLSRCWKVLSLKN-TVPLDFRFSAKPLVKTIF-EGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIY 142 (386)
Q Consensus 65 ~~~~~~~~~~~~f~fd~vf~~~~-sq~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli 142 (386)
.|.. ....++.|.|+++++.+. +-.+++..-.+..++-.+ .+.|+.|+..|.. ..
T Consensus 83 ~~It-~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~----~w------------------ 139 (333)
T 4etp_B 83 GVIT-QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTT----PH------------------ 139 (333)
T ss_dssp TEEE-C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESS----CC------------------
T ss_pred ceEe-ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCC----Cc------------------
Confidence 3554 566889999999998765 455566666899999999 9999999999863 11
Q ss_pred hhhHHHHHHHhcCCCC-CCceeeEEEEEEEEEcCe-eeeccccc
Q psy23 143 AMAAKDVFKLLKSPKY-RGLNLHVSASFFEIYSGK-VFDLLAEK 184 (386)
Q Consensus 143 ~r~~~~LF~~~~~~~~-~~~~~~v~vS~~EIyne~-v~DLL~~~ 184 (386)
+..-..|+..+..... -.+.|.+.+-|+.+-++. ..|||.+.
T Consensus 140 ~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 140 GSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp CHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred HHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 1244455555555300 036889999998887776 79999764
No 58
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.57 E-value=0.58 Score=46.79 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=34.7
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHH-HHhc--C--cCceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVK-TIFE--G--GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~--G--~n~ti~aYGqtgSGKT~Tm 126 (386)
-+|+.|-+.+.--+++.+.+..|+.. ..+. | ..-.|+-||+.|+|||...
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 46777777776667777777777752 3333 2 2356899999999999764
No 59
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.06 E-value=0.4 Score=44.62 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=28.0
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHH-HHhcCcC----ceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVK-TIFEGGM----ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G~n----~ti~aYGqtgSGKT~Tm 126 (386)
..|+.|-+.+.-.+++.+.++.|+-. .++++++ ..++-||++|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 35566655555555555555555532 3344333 22889999999999875
No 60
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.97 E-value=0.8 Score=44.45 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=22.0
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
+.+.+++.--...+...|++|||||.+|.
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 45556665555678889999999999983
No 61
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.70 E-value=0.43 Score=45.40 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=29.7
Q ss_pred eeeEEcCCCCChHHHHHhhhhHHHH-HHhcCc---CceeeeeccCCCCCceee
Q psy23 78 RCWKVLSLKNTVPLDFRFSAKPLVK-TIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 78 ~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
.|+.|.+.+.--+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 5666666554444554444444431 233332 246899999999999875
No 62
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=75.57 E-value=0.97 Score=40.45 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=19.8
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+..+++|.+ ++..++||||||.+
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 34566678876 68889999999987
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=74.56 E-value=0.64 Score=41.69 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=19.6
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4556678866 678999999999773
No 64
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=74.08 E-value=0.98 Score=44.94 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=27.6
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..|.||.+.. +.++...+.. +..+.+. .|....++-||++|+|||+.+
T Consensus 100 ~~~tfd~fv~-g~~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 100 PDYTFENFVV-GPGNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp TTCSGGGCCC-CTTTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCChhhcCC-CCchHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 4578887553 2233333322 2222221 121346889999999999987
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=73.68 E-value=0.47 Score=43.04 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.3
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...++-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 446899999999999865
No 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.47 E-value=1.3 Score=42.22 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=29.5
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCc--eeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMA--TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~--ti~aYGqtgSGKT~Tm 126 (386)
+.||.+.+. +...+ .+..+++.+-.|... .++-||++|+|||+..
T Consensus 41 ~~~~~ivG~----~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVGQ----LAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccCh----HHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 456666653 33322 233455566666654 8999999999999876
No 67
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=73.41 E-value=1.1 Score=41.58 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.3
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
.....++-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446899999999999876
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.41 E-value=1.2 Score=39.61 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=18.7
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..+++|.+ ++..++||||||.+
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHH
Confidence 4556677866 57788999999986
No 69
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=72.46 E-value=2.6 Score=39.30 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=24.3
Q ss_pred HHHhhhhHHHHHHhcCc-----CceeeeeccCCCCCceee
Q psy23 92 DFRFSAKPLVKTIFEGG-----MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 92 vf~~~~~plv~~~l~G~-----n~ti~aYGqtgSGKT~Tm 126 (386)
-+..+...++..++.|+ ...|+..|++|||||+..
T Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 11 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34455666677777553 235778899999999864
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=72.39 E-value=1.3 Score=38.80 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4556677866 677889999999864
No 71
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=71.97 E-value=1.4 Score=36.37 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=16.3
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45567899999999998753
No 72
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=71.85 E-value=1.8 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.6
Q ss_pred cCceeeeeccCCCCCceee
Q psy23 108 GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..|+-||++|+|||+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH
T ss_pred CCCcEEEECCCCccHHHHH
Confidence 3456888999999999875
No 73
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.50 E-value=1.7 Score=40.50 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.2
Q ss_pred hhHHHHHHhcCc---CceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
+...+..+++|. ..+|+-||+.|+|||+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 345578888887 348999999999999875
No 74
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=70.80 E-value=1.2 Score=39.81 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=18.6
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++..+.+|- .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3455555664 4678999999999754
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=70.54 E-value=1.3 Score=40.97 Aligned_cols=18 Identities=44% Similarity=0.673 Sum_probs=15.2
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...+.-.|++|||||.++
T Consensus 25 g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SEEEEEECSTTCSHHHHH
T ss_pred CCEEEEECCCCccHHHHH
Confidence 446777899999999987
No 76
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=70.47 E-value=1.4 Score=38.82 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=19.0
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 50 ~i~~~~~~~~--~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGID--LIVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556678866 477899999999763
No 77
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.38 E-value=1.5 Score=39.95 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=19.5
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.++..++.|.| ++..++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34556677866 68899999999976
No 78
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=70.29 E-value=1.5 Score=39.42 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=18.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4456677866 577789999999763
No 79
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.08 E-value=1 Score=40.56 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.8
Q ss_pred HHHHHhcCcC--ceeeeeccCCCCCceeec
Q psy23 100 LVKTIFEGGM--ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 100 lv~~~l~G~n--~ti~aYGqtgSGKT~Tm~ 127 (386)
.++.+++|.- .+++-||+.|+|||+...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3455666633 469999999999998864
No 80
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=70.07 E-value=1.5 Score=41.11 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+..++.|-.-.+++.++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3456667775556889999999999863
No 81
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=69.99 E-value=1.8 Score=41.47 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=20.8
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+..+++|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45667778877 688999999999873
No 82
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.98 E-value=1.8 Score=38.85 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.0
Q ss_pred cCceeeeeccCCCCCceee
Q psy23 108 GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm 126 (386)
....++-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999875
No 83
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.95 E-value=1.6 Score=41.26 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=18.6
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+-..+-.|--..++-||+.|+|||+++
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 333334553333788999999999987
No 84
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=69.55 E-value=0.81 Score=43.44 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=16.9
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
+....++-||++|+|||+.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 44567899999999999876
No 85
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.25 E-value=0.85 Score=45.46 Aligned_cols=78 Identities=23% Similarity=0.228 Sum_probs=43.6
Q ss_pred eeeEEcCCCCChHHHHHhhhhHHHH-HHhc--Cc--CceeeeeccCCCCCceeecc------CC-----CCCCcccccch
Q psy23 78 RCWKVLSLKNTVPLDFRFSAKPLVK-TIFE--GG--MATCFAYGQTGSGKTHTMGG------DF-----QGKTQDCKKGI 141 (386)
Q Consensus 78 ~fd~vf~~~~sq~~vf~~~~~plv~-~~l~--G~--n~ti~aYGqtgSGKT~Tm~G------~~-----~~~~~~~~~Gl 141 (386)
.|+.|-+.+.--+++.+.+..|+.. ..+. |. .-.|+-||++|+|||...-- .+ .........|-
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccch
Confidence 4556666555555555555555542 2333 32 23489999999999976521 00 00001123456
Q ss_pred hhhhHHHHHHHhcC
Q psy23 142 YAMAAKDVFKLLKS 155 (386)
Q Consensus 142 i~r~~~~LF~~~~~ 155 (386)
-.+.++++|.....
T Consensus 250 ~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 250 GPRMVRDVFRLARE 263 (428)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66777888876654
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=68.81 E-value=1.6 Score=39.12 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=18.6
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 59 ~i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCcCHHHHHH
Confidence 4455667865 567789999999873
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=68.60 E-value=0.85 Score=39.51 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.++.+++|.+ ++..++||+|||.+..
T Consensus 41 ~i~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 41 VAQPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 3445566655 6779999999998753
No 88
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.47 E-value=0.91 Score=45.39 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=32.3
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHH-HHHhcCc----CceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLV-KTIFEGG----MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv-~~~l~G~----n~ti~aYGqtgSGKT~Tm 126 (386)
-+||.|-+.+.--+++-+.+.-|+. ...+..+ .-.|+-||++|+|||...
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 3566666666555666666666654 2333322 356899999999999764
No 89
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=68.24 E-value=1.9 Score=37.25 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.9
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999875
No 90
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=68.20 E-value=1.8 Score=38.42 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=18.4
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..+++|.| ++..++||||||.+
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455677866 57788999999987
No 91
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=67.84 E-value=1.8 Score=39.08 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=18.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4556677865 567789999999863
No 92
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=67.80 E-value=2.3 Score=40.36 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHHHHhcCcC-c--eeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGM-A--TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n-~--ti~aYGqtgSGKT~Tm 126 (386)
.+...+.|.. . .++-||++|+|||+.+
T Consensus 32 ~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 32 LLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 4455555543 3 6889999999999976
No 93
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.79 E-value=2.2 Score=40.51 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHhcC-cCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEG-GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G-~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..++.| ....++-||++|+|||+.+
T Consensus 35 ~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 35 AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34454444 3457999999999999876
No 94
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=66.95 E-value=1.2 Score=43.33 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=31.0
Q ss_pred ceeeeeEEcCCCCChHHHHHhhhhHHHH-HHhc---CcCceeeeeccCCCCCceee
Q psy23 75 KLSRCWKVLSLKNTVPLDFRFSAKPLVK-TIFE---GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 75 ~~f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~---G~n~ti~aYGqtgSGKT~Tm 126 (386)
....|+.+.+.+.--+.+.+.+..|+.. ..+. .-...|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4567788777554444444444333321 1112 22357999999999999875
No 95
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=66.82 E-value=2 Score=39.48 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.5
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...++-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999875
No 96
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.92 E-value=1.7 Score=40.83 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=18.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+...+..|-...++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 333344453344889999999999876
No 97
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=65.43 E-value=1.1 Score=42.22 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=29.4
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHH-HHhcCc---CceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVK-TIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
..|+.+.+.+.--+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45666666554444444444444321 112222 345899999999999876
No 98
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=65.42 E-value=2.2 Score=40.70 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=21.9
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+..+++|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3556777775667889999999999873
No 99
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=65.37 E-value=2.3 Score=39.32 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=16.7
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|....++-||++|+|||++.
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 454445899999999999876
No 100
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.94 E-value=1.3 Score=38.87 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=18.4
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..+++|.+ ++..++||||||.+
T Consensus 34 ~i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 34 IIPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 4456667765 56789999999986
No 101
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.46 E-value=3 Score=41.43 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=29.4
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcC--ceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n--~ti~aYGqtgSGKT~Tm 126 (386)
+.|+.+.+ |+++.+. +..+++.+..|.. ..++-||++|+|||+..
T Consensus 34 ~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 34 QAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 45566654 4444433 2345666666654 36888999999999865
No 102
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=64.40 E-value=1.9 Score=43.58 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.5
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999865
No 103
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.32 E-value=1.3 Score=44.54 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=33.6
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHH-HHhcC----cCceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVK-TIFEG----GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G----~n~ti~aYGqtgSGKT~Tm 126 (386)
-+|+.|-+.+.--+++.+.+.-|+.. ..+.+ .--.|+-||+.|+|||...
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 46677777666666666666666642 33333 2456899999999999753
No 104
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=64.31 E-value=1.4 Score=42.35 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=30.9
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHH-HHhcCc---CceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVK-TIFEGG---MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G~---n~ti~aYGqtgSGKT~Tm 126 (386)
...|+.+.+.+..-+.+.+.+..|+-. ..+.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 356777776655555555554444321 222221 235889999999999875
No 105
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=64.09 E-value=2.4 Score=40.00 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+..+++|-...++..++||||||.+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 3456667775466788999999999853
No 106
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=64.00 E-value=1.9 Score=39.81 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999875
No 107
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=63.37 E-value=1.7 Score=42.28 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=20.2
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+++..+.-.-...+...|++|||||.+|
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 4455544334456788999999999987
No 108
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.33 E-value=1.9 Score=42.63 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=34.0
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHH-HHhc--Cc--CceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVK-TIFE--GG--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~--G~--n~ti~aYGqtgSGKT~Tm 126 (386)
-+||.|-+.+.--+++-+.+.-|+.. ..+. |. .-.|+-||+.|+|||...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 35666666666667777777777652 3333 22 346899999999999764
No 109
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=63.21 E-value=2.9 Score=41.34 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.8
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+..++.|.+..++..|+||||||..
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 345666777667889999999999976
No 110
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=62.73 E-value=1 Score=44.81 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=29.0
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHH-HHhcC---cCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVK-TIFEG---GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G---~n~ti~aYGqtgSGKT~Tm 126 (386)
...|+.+.+.+.--+.+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 356677666444333443333333221 12223 2356899999999999875
No 111
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=62.53 E-value=2.3 Score=38.33 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeec
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++.++++.+ ++..|+||+|||+...
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 334556654 6778999999999864
No 112
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=62.14 E-value=5.7 Score=44.58 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 699999999999999999764
No 113
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=62.13 E-value=4.2 Score=36.79 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=22.7
Q ss_pred HHHhhhhHHHHHHhcCcC-----ceeeeeccCCCCCcee
Q psy23 92 DFRFSAKPLVKTIFEGGM-----ATCFAYGQTGSGKTHT 125 (386)
Q Consensus 92 vf~~~~~plv~~~l~G~n-----~ti~aYGqtgSGKT~T 125 (386)
-|+.....++..++.|+. ..|+..|++|||||+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 10 EFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 355555555666665543 3467889999999975
No 114
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=61.99 E-value=2.7 Score=42.69 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=16.1
Q ss_pred cCcCceeeeeccCCCCCceeec
Q psy23 106 EGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.|.+ +...|+||||||.+|.
T Consensus 259 ~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHHH
Confidence 4554 6778999999999873
No 115
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=60.62 E-value=2.8 Score=40.03 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=19.0
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++.+++|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4556667766 677899999999754
No 116
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=59.96 E-value=3 Score=42.58 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=17.4
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeec
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++.+.+|....++ .++||||||.+++
T Consensus 191 ~~~~~~~~~~~ll-~~~TGsGKT~~~~ 216 (590)
T 3h1t_A 191 VQSVLQGKKRSLI-TMATGTGKTVVAF 216 (590)
T ss_dssp HHHHHTTCSEEEE-EECTTSCHHHHHH
T ss_pred HHHHhcCCCceEE-EecCCCChHHHHH
Confidence 3334446655444 4999999999964
No 117
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=59.64 E-value=2.1 Score=39.44 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.5
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 344444899999999999875
No 118
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.52 E-value=2.2 Score=42.52 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=30.2
Q ss_pred eeeEEcCCCCChHHHHHhhhhHHHH-HHhc--C--cCceeeeeccCCCCCceee
Q psy23 78 RCWKVLSLKNTVPLDFRFSAKPLVK-TIFE--G--GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 78 ~fd~vf~~~~sq~~vf~~~~~plv~-~~l~--G--~n~ti~aYGqtgSGKT~Tm 126 (386)
+|+.|=+.+.--+++.+.+..|+.. ..+. | ..-.|+-||+.|+|||...
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 4555555555555555555555531 2232 2 3356999999999999754
No 119
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=59.34 E-value=2.8 Score=43.69 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=19.0
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.|..++..-. -.+..|+.|||||+|+..
T Consensus 197 AV~~al~~~~-~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 197 AVLFALSQKE-LAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHCSS-EEEEECCTTSCHHHHHHH
T ss_pred HHHHHhcCCC-ceEEECCCCCCHHHHHHH
Confidence 4555554322 346789999999999854
No 120
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.26 E-value=1.5 Score=42.04 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=19.2
Q ss_pred HHHhcC---cCceeee--eccCCCCCceee
Q psy23 102 KTIFEG---GMATCFA--YGQTGSGKTHTM 126 (386)
Q Consensus 102 ~~~l~G---~n~ti~a--YGqtgSGKT~Tm 126 (386)
..+..| -...++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 455555 4557788 999999999876
No 121
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.22 E-value=3.2 Score=38.23 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=18.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++.+++|.+ ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 4455667765 677899999999865
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=58.78 E-value=3 Score=36.77 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=22.4
Q ss_pred hhHHHHHHhcC-c--CceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEG-G--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G-~--n~ti~aYGqtgSGKT~Tm 126 (386)
.-+-++.++.| + ...+.-+|++|+|||..+
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 34567888854 3 345678899999999976
No 123
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.49 E-value=2.1 Score=40.37 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=16.6
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34557889999999999986
No 124
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=58.41 E-value=4 Score=39.05 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=19.6
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4566778876 678899999999764
No 125
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=57.76 E-value=3.5 Score=41.49 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=20.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..+++|.+..++..++||||||.+
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHH
Confidence 45667777556678899999999986
No 126
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=57.71 E-value=5.8 Score=39.55 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=22.3
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
..+++.+-.+....++-||++|+|||+..-+
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 3344444456666788999999999987643
No 127
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=56.72 E-value=2.3 Score=39.84 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-||++|+|||+.+
T Consensus 47 ~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CCEEEESCCCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 36888999999999875
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=56.67 E-value=4.2 Score=35.43 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=18.5
Q ss_pred hhHHHHHHhc--CcCceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFE--GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~--G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..+++.+.+ .-...|.-.|++|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3344444443 23334556799999999865
No 129
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=56.27 E-value=6.8 Score=36.16 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.6
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
+....++-||++|+|||+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 34567899999999999875
No 130
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=55.90 E-value=4.1 Score=39.29 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=18.7
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 4556677865 67899999999984
No 131
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.25 E-value=3.8 Score=37.66 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=16.2
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|.-..++-||+.|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444334889999999999875
No 132
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=55.05 E-value=4.3 Score=35.97 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=18.2
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++++++-.|-- +.-.|++|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 45566655543 345799999999876
No 133
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.98 E-value=5 Score=39.94 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=21.6
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+...+-.|.-..++-||++|+|||+..
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 34444445565568999999999999876
No 134
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=54.63 E-value=4.8 Score=39.92 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 86 KNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 86 ~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..|.+.+..+. ..+-++ ...++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 446666665443 233333 347889999999999876
No 135
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.18 E-value=2.6 Score=35.78 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.0
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.+...|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999999874
No 136
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=53.91 E-value=5.2 Score=37.41 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.8
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+..|+-||++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999864
No 137
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.61 E-value=2.3 Score=42.89 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999875
No 138
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=52.99 E-value=5.6 Score=34.49 Aligned_cols=29 Identities=34% Similarity=0.277 Sum_probs=18.8
Q ss_pred hHHHHHHhc---CcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFE---GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~---G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+++.+.. .-...|...|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 345555553 22345667799999999875
No 139
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=52.95 E-value=4.2 Score=42.15 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.7
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
+..++..|++|||||+|+-
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3567889999999998863
No 140
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.84 E-value=6.1 Score=37.31 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.3
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999875
No 141
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=52.15 E-value=8.2 Score=36.00 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.5
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
+....|+-||++|+|||+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 34457899999999999865
No 142
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=52.06 E-value=4.6 Score=34.93 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=22.2
Q ss_pred hHHHHHHhc-CcC--ceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFE-GGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~-G~n--~ti~aYGqtgSGKT~Tm 126 (386)
-+-++.++. |+. ..+..+|++|+|||..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 456788886 554 45678999999999875
No 143
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=51.94 E-value=6.1 Score=37.75 Aligned_cols=25 Identities=40% Similarity=0.403 Sum_probs=18.7
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 45 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHccCCC--EEEEcCCCCHHHHHH
Confidence 3455677876 577899999999753
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=51.75 E-value=4 Score=35.46 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=20.4
Q ss_pred hHHHHHHhc-CcC--ceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFE-GGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~-G~n--~ti~aYGqtgSGKT~Tm 126 (386)
-+.++.++. |+. ..+.-+|++|+|||+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 345667775 442 34567899999999876
No 145
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=51.62 E-value=5.3 Score=37.61 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999886
No 146
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=51.61 E-value=5.6 Score=36.98 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.3
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-||++|+|||+++
T Consensus 49 ~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVA 65 (324)
T ss_dssp SEEEECSSTTSSHHHHH
T ss_pred eEEEeeCcCCCCHHHHH
Confidence 45778888999999976
No 147
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=51.52 E-value=7.9 Score=39.92 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.0
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+|+.+++|.+ +++.++||+|||.+
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHH
Confidence 35667788877 67889999999974
No 148
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=51.25 E-value=4.7 Score=41.82 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
...+..|+.|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 356789999999999964
No 149
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=50.82 E-value=4.9 Score=34.98 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=21.1
Q ss_pred hHHHHHHhc-CcC--ceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFE-GGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~-G~n--~ti~aYGqtgSGKT~Tm 126 (386)
-+-++.++. |+. ..+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 456777784 443 34667899999999876
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.32 E-value=3.4 Score=38.84 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=13.9
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999986
No 151
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=50.23 E-value=5.5 Score=39.67 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=19.3
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4556677866 577899999999874
No 152
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=50.15 E-value=3.8 Score=37.50 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=17.2
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeec
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++.++++.++ +..++||||||.+..
T Consensus 122 i~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 4445555443 449999999999864
No 153
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=50.10 E-value=7 Score=39.35 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=20.7
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+..++.|-+-.++..++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 345666766556789999999999986
No 154
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=50.08 E-value=8.7 Score=36.03 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||.++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4556799999999987
No 155
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=49.73 E-value=3.9 Score=33.62 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999854
No 156
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=49.38 E-value=9.1 Score=40.50 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=22.2
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
+.+++.+..+....++-||++|+|||...-
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 344545555666678999999999998763
No 157
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=49.04 E-value=5.6 Score=36.97 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=18.5
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|. ..++..++||||||.+.
T Consensus 36 ~i~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHHHhCCC-CCEEEECCCCChHHHHH
Confidence 345556663 34678899999999874
No 158
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=48.85 E-value=3.8 Score=39.30 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=15.4
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...++-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 159
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=48.74 E-value=7.4 Score=37.07 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|+|||.++
T Consensus 131 vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999886
No 160
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.61 E-value=3.5 Score=38.99 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=18.8
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556667766 567899999999873
No 161
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=48.38 E-value=7.2 Score=38.14 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=18.7
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..++.|.+ +++.++||||||.+
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 4555677865 68889999999985
No 162
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=48.12 E-value=7.2 Score=36.78 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556677765 677889999999864
No 163
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=48.11 E-value=6.2 Score=39.14 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=19.0
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 4456677866 577899999999873
No 164
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=47.49 E-value=5.7 Score=40.81 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHhcCcCceeeeeccCCCCCceeecc
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.++.-.+..++..|..|||||+||..
T Consensus 16 ~av~~~~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 16 EAVAAPRSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp HHHTCCSSCEEEEECTTSCHHHHHHH
T ss_pred HHHhCCCCCEEEEECCCCCHHHHHHH
Confidence 33444467788999999999999853
No 165
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=47.39 E-value=3.7 Score=38.49 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=16.7
Q ss_pred HHhcCcCceeeeeccCCCCCceee
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 468899999999999999999865
No 166
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=47.08 E-value=3.9 Score=35.08 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.6
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3455699999999875
No 167
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=46.99 E-value=5.7 Score=39.03 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeec
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++.++++.+ ++..++||+|||.+..
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 445566644 6778999999999863
No 168
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=46.54 E-value=3.9 Score=34.95 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999875
No 169
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=46.23 E-value=22 Score=24.66 Aligned_cols=47 Identities=26% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCccccceeEEeEEeeecCCCceEEEEeeecCccCCeEEeeeeeeccCC
Q psy23 2 AQNSVWGRIHSAIVSSLHPEGRSVTVEWFEKGETKGKEVELDALFSLNS 50 (386)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~gk~~~~~~i~~~n~ 50 (386)
|+=+.-|..+.|+|.+++.++..++|--..=|. -.+++++.+..+.|
T Consensus 12 A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn--~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 12 AIWSEDGCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPIC 58 (59)
T ss_dssp EECTTTSCEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGCBCTTC
T ss_pred EEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCC--EEEEcHHHeeCCCC
Confidence 344556899999999999877789999864442 24566776666554
No 170
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=46.14 E-value=4.9 Score=38.33 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=15.2
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999864
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=46.00 E-value=5.2 Score=35.18 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred HHHHHHhcC-c--CceeeeeccCCCCCceee
Q psy23 99 PLVKTIFEG-G--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G-~--n~ti~aYGqtgSGKT~Tm 126 (386)
+-++.++.| + ...+.-+|++|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345677643 3 345678899999999985
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=45.66 E-value=4.1 Score=34.66 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999865
No 173
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=45.25 E-value=7.7 Score=40.96 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=21.8
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
+.+++.+.......++-||++|+|||+.+-
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 334555555566678899999999998763
No 174
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=45.23 E-value=4 Score=40.43 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.2
Q ss_pred HHhcCcCceeeeeccCCCCCceee
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+++|++..|...|++|+|||..|
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 368899999999999999999865
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=45.15 E-value=4.3 Score=35.45 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|...|++|||||..+
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999999876
No 176
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=45.10 E-value=4.1 Score=37.61 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.5
Q ss_pred cCceeeeeccCCCCCceee
Q psy23 108 GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm 126 (386)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3456778899999999876
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.09 E-value=8.1 Score=38.93 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.6
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999876
No 178
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=44.77 E-value=5.1 Score=33.37 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4778899999999854
No 179
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.53 E-value=4.4 Score=34.34 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+...|++|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999865
No 180
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=44.43 E-value=5.4 Score=33.32 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.6
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||+..
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999863
No 181
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=44.17 E-value=4.5 Score=39.04 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.9
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
|.-++..|++|||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 445677899999999987
No 182
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=44.04 E-value=4.3 Score=35.26 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||..+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=43.89 E-value=4.3 Score=34.89 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999876
No 184
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=43.56 E-value=29 Score=37.26 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=36.1
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHH-HHhcCcC----ceeeeeccCCCCCceee
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVK-TIFEGGM----ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~G~n----~ti~aYGqtgSGKT~Tm 126 (386)
-.|+.|-+.+..-+++.+.+.-|+-. ..+.++. ..|+-||+.|+|||...
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 46788888887777777766666652 3445543 36999999999999654
No 185
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=43.42 E-value=13 Score=35.89 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=13.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||.++
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4566799999999987
No 186
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=43.26 E-value=5.5 Score=37.50 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=13.7
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..+.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35556799999999987
No 187
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=43.17 E-value=7 Score=37.54 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=19.1
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.+..+++| .++..++||+|||.+..
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 45566777 55678999999999764
No 188
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=42.90 E-value=9.8 Score=38.47 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=18.2
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++..+..|. .|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 344444443 6788999999999875
No 189
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=42.84 E-value=5.9 Score=33.36 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||+..
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999754
No 190
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=42.73 E-value=5.7 Score=33.44 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.7
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999864
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=42.69 E-value=8.3 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=23.2
Q ss_pred hhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 97 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
+..+++.+..+-...++-||++|+|||+.+.+
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 34455555566666788999999999988743
No 192
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=42.64 E-value=7.2 Score=41.88 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=17.8
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeec
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
|..++. +..++..|+.|||||+|+.
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 344443 3346789999999999974
No 193
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=42.55 E-value=11 Score=38.37 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=19.9
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
++..++.|-+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 55666755555678899999999986
No 194
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.40 E-value=9.9 Score=39.36 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.6
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+++.+++|.+ ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 5566677766 678899999999865
No 195
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=42.25 E-value=10 Score=39.30 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=18.5
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
++..+++|.| ++..++||||||..
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHH
Confidence 4455677876 57889999999985
No 196
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=42.18 E-value=4.1 Score=36.67 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=15.5
Q ss_pred ceeeeeccCCCCCceeecc
Q psy23 110 ATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~G 128 (386)
..++-||..|+|||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4567789999999998765
No 197
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=42.11 E-value=7.6 Score=39.95 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceeec
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
.++.++. +..++..|..|||||+++.
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 3444443 3567789999999999874
No 198
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=42.04 E-value=8 Score=41.53 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=18.3
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
|..++.+ ...+..|+.|||||+|+..
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHHH
Confidence 3444442 3467899999999999743
No 199
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=41.86 E-value=5 Score=39.27 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.9
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 567889999999999986
No 200
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=41.73 E-value=4.1 Score=35.23 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=14.7
Q ss_pred eeeeeccCCCCCceeecc
Q psy23 111 TCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~G 128 (386)
.++-||+.|+|||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 456799999999998754
No 201
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=41.41 E-value=6.9 Score=34.54 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=8.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 30 i~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEECSCC----CHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999875
No 202
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=40.86 E-value=5.7 Score=35.00 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=13.8
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.+.-.|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999999873
No 203
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=40.76 E-value=5.5 Score=39.39 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.9
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
++..+++|.+. ++..++||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 34566777654 57889999999986
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=40.71 E-value=16 Score=36.31 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=14.2
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..|+..|.+|+|||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 345666999999999863
No 205
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=40.63 E-value=51 Score=24.28 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=40.3
Q ss_pred CccccceeEEeEEeeecCCCceEEEEeeecCccCCeEEeeeeeeccCCCCCCCCCC
Q psy23 3 QNSVWGRIHSAIVSSLHPEGRSVTVEWFEKGETKGKEVELDALFSLNSNLMPKTNN 58 (386)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~gk~~~~~~i~~~n~~l~p~~~~ 58 (386)
+-+.-|....|+|.+++.+...++|--..=| +-.+++++.+..+.++|+-.+.+
T Consensus 19 ~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYG--N~e~V~~~~Lr~l~~~ll~~~~~ 72 (78)
T 2d9t_A 19 LYWEDNKFYRAEVEALHSSGMTAVVKFTDYG--NYEEVLLSNIKPVQTEAWVRDPN 72 (78)
T ss_dssp ECTTTCCEEEEEEEEECSSSSEEEEEETTTT--EEEEEEGGGEEECCCCCCCCCSS
T ss_pred EECCCCCEEEEEEEEEeCCCCEEEEEEEcCC--CeEEEcHHHeEeCCHHHhhhcCC
Confidence 3345688999999999987788999986333 33567899999998888754433
No 206
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=40.34 E-value=12 Score=34.96 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=13.2
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|.-.|++|||||+..
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44556699999999864
No 207
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=40.29 E-value=5.7 Score=33.97 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 208
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=40.12 E-value=9.8 Score=35.14 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.2
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999876
No 209
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.02 E-value=5.7 Score=34.54 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 23 ~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 23 VVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999876
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=39.99 E-value=5.7 Score=33.72 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3556799999999875
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=39.77 E-value=6.9 Score=32.49 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|.+|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999864
No 212
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=39.42 E-value=12 Score=39.11 Aligned_cols=40 Identities=35% Similarity=0.383 Sum_probs=28.3
Q ss_pred CCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 84 SLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 84 ~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+.-.|..-++. +++.+-.|... ....|.||||||++|..
T Consensus 8 ~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 8 SPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 677778777655 45555566533 34679999999999963
No 213
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=39.21 E-value=12 Score=39.40 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 799999999999999999774
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=39.19 E-value=5.7 Score=38.21 Aligned_cols=16 Identities=50% Similarity=0.657 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||+++
T Consensus 177 ~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 177 VIVVAGETGSGKTTLM 192 (361)
T ss_dssp CEEEEESSSSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999999987
No 215
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=39.17 E-value=8.8 Score=39.91 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.3
Q ss_pred CcCceeeeeccCCCCCceeecc
Q psy23 107 GGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
-.++.++..|..|||||++|..
T Consensus 13 ~~~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 13 FVTGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp CCSSEEEECCCTTSCHHHHHHH
T ss_pred CCCCCEEEEeCCCCChHHHHHH
Confidence 3467788899999999999963
No 216
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=39.02 E-value=5.7 Score=36.02 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=16.7
Q ss_pred CceeeeeccCCCCCceeecc
Q psy23 109 MATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~G 128 (386)
...||..|..|+||||++..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35688999999999999754
No 217
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=38.96 E-value=6.1 Score=37.57 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+...|++|||||.++
T Consensus 173 ~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp CEEEEESTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 218
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=38.76 E-value=7.3 Score=32.71 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999853
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.69 E-value=11 Score=39.78 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=14.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999874
No 220
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=38.69 E-value=13 Score=39.65 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.5
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+....++..|+||||||...
T Consensus 386 ~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 386 SEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp SSSCCCCEEECCSSSSHHHHH
T ss_pred ccCCCcEEEEcCCCCCHHHHH
Confidence 344457889999999999765
No 221
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=38.31 E-value=7.3 Score=32.07 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999864
No 222
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=37.65 E-value=8.1 Score=33.23 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=13.7
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999864
No 223
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=37.24 E-value=6.4 Score=34.75 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.1
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999875
No 224
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=37.08 E-value=14 Score=39.46 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999764
No 225
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=36.98 E-value=8.7 Score=41.18 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=32.7
Q ss_pred eeeeeEEcCCCCChHHHHHhhhhHHHH-HHhc----CcCceeeeeccCCCCCceee
Q psy23 76 LSRCWKVLSLKNTVPLDFRFSAKPLVK-TIFE----GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 76 ~f~fd~vf~~~~sq~~vf~~~~~plv~-~~l~----G~n~ti~aYGqtgSGKT~Tm 126 (386)
...|+.+.+.+..-+.+.+.+..|+-. .+++ .-...|+-||++|||||+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 466777777666666666655544432 1222 12345899999999999765
No 226
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=36.94 E-value=6.7 Score=36.69 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=14.4
Q ss_pred ceeeeeccCCCCCceeec
Q psy23 110 ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm~ 127 (386)
..+...|++|+|||+++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 355667999999999873
No 227
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=36.66 E-value=8 Score=35.03 Aligned_cols=15 Identities=47% Similarity=0.614 Sum_probs=12.5
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467789999999874
No 228
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=36.64 E-value=9.7 Score=37.78 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=18.1
Q ss_pred HHHHhcCcCceeeeeccCCCCCceeec
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 127 (386)
++.+++|.+ ++..|+||||||.+..
T Consensus 122 i~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 122 VFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 444555543 5778999999999864
No 229
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=36.60 E-value=14 Score=39.48 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.1
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 689999999999999999763
No 230
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=36.38 E-value=5.7 Score=34.78 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.5
Q ss_pred eeeeeccCCCCCceeecc
Q psy23 111 TCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~G 128 (386)
..+-||+.|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 456789999999988654
No 231
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=36.35 E-value=6.8 Score=34.08 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566799999999986
No 232
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=36.15 E-value=7.4 Score=32.69 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4568899999999765
No 233
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=36.12 E-value=8.1 Score=32.54 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=13.9
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999864
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=35.96 E-value=6.9 Score=39.61 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=14.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999876
No 235
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=35.78 E-value=8.6 Score=33.21 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=12.7
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999753
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.59 E-value=14 Score=38.93 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.9
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
+.++-||++|+|||+..
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47899999999999864
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=35.10 E-value=16 Score=39.15 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999864
No 238
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=35.07 E-value=16 Score=40.06 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=18.3
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
++..+++|. .++..++||||||.+
T Consensus 47 aI~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHHcCC--CEEEEECCCCcHHHH
Confidence 455667775 478899999999954
No 239
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=34.68 E-value=11 Score=31.52 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=9.9
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999864
No 240
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=34.51 E-value=9.1 Score=32.49 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.6
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999863
No 241
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=34.48 E-value=16 Score=39.13 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.2
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999764
No 242
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=34.46 E-value=13 Score=39.44 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=19.3
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4556678865 577899999999874
No 243
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=34.40 E-value=9.4 Score=32.04 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999864
No 244
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=34.34 E-value=16 Score=40.30 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999774
No 245
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=34.27 E-value=15 Score=39.61 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=19.3
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 689999999999999999774
No 246
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=34.25 E-value=9.3 Score=32.07 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999863
No 247
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=34.14 E-value=22 Score=35.36 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=15.6
Q ss_pred CceeeeeccCCCCCceeec
Q psy23 109 MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~ 127 (386)
...|+..|.+|+|||+|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 3467778999999999974
No 248
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=34.05 E-value=29 Score=34.25 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=14.5
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.|...|++|+|||+++.
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56778999999999874
No 249
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=33.94 E-value=17 Score=38.93 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 799999999999999999864
No 250
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=33.76 E-value=17 Score=40.03 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999774
No 251
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=33.71 E-value=14 Score=31.77 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=13.6
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...|...|++|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345566799999999764
No 252
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.63 E-value=13 Score=37.64 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+...|++|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4556799999999986
No 253
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=33.50 E-value=9.7 Score=31.88 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=12.9
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999753
No 254
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=33.50 E-value=24 Score=32.92 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.+...|..|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999863
No 255
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=33.48 E-value=13 Score=34.29 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=15.2
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++.+|+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57899999999999876
No 256
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=33.48 E-value=9.7 Score=31.46 Aligned_cols=16 Identities=31% Similarity=0.438 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999864
No 257
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=33.40 E-value=18 Score=40.00 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=18.3
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCce
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTH 124 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~ 124 (386)
..+..+++|.| ++..++||||||.
T Consensus 63 ~ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 63 MWAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCCHHH
Confidence 34556778865 5788999999994
No 258
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=33.07 E-value=11 Score=31.43 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|..|||||+.+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999999864
No 259
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=32.94 E-value=11 Score=31.20 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=19.2
Q ss_pred HHHHHhc-CcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFE-GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~-G~n~ti~aYGqtgSGKT~Tm 126 (386)
+.+.++. -....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3334444 45567889999999999765
No 260
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=32.87 E-value=8.7 Score=36.18 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.7
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|...|++|+|||+|+
T Consensus 106 vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4667799999999987
No 261
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=32.79 E-value=15 Score=36.05 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.9
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999984
No 262
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.77 E-value=35 Score=25.12 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=34.2
Q ss_pred CCccccceeEEeEEeeecCCCceEEEEeeecCccCCeEEeeeeeeccCCC
Q psy23 2 AQNSVWGRIHSAIVSSLHPEGRSVTVEWFEKGETKGKEVELDALFSLNSN 51 (386)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~gk~~~~~~i~~~n~~ 51 (386)
|+-+ -|....|+|++|+.++ .++|-.. .+ ..++++...+..+.+.
T Consensus 18 A~ws-Dg~~Y~A~I~~v~~~~-~~~V~f~-Dy--n~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 18 ARWT-DCRYYPAKIEAINKEG-TFTVQFY-DG--VIRCLKRMHIKAMPED 62 (74)
T ss_dssp EECS-SSSEEEEEEEEESTTS-SEEEEET-TS--CEEEECGGGEECCCGG
T ss_pred EECC-CCCEEEEEEEEECCCC-EEEEEEe-cC--CeEEecHHHCeeCChh
Confidence 4555 7899999999999774 5899886 23 7788888777766554
No 263
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=32.57 E-value=10 Score=32.45 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.0
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+..|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999854
No 264
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=32.40 E-value=15 Score=40.01 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=19.3
Q ss_pred HHHHHhcCcCceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..+++|.+ ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 4556678876 577899999999874
No 265
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=32.25 E-value=12 Score=31.63 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=15.3
Q ss_pred CcCceeeeeccCCCCCceee
Q psy23 107 GGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 107 G~n~ti~aYGqtgSGKT~Tm 126 (386)
+....|.-.|.+|||||+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 34456778899999999764
No 266
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=32.15 E-value=51 Score=23.19 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=30.6
Q ss_pred CCccccceeEEeEEeeecCCCceEEEEeeecCccCCeEEeeeeeec
Q psy23 2 AQNSVWGRIHSAIVSSLHPEGRSVTVEWFEKGETKGKEVELDALFS 47 (386)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~gk~~~~~~i~~ 47 (386)
|+-+.-|....|+|.+++.+...++|-...=|.. .+++++.+..
T Consensus 17 A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~--e~V~~~~Lrp 60 (64)
T 4a4f_A 17 AVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNA--EVTPLLNLKP 60 (64)
T ss_dssp EECTTTSSEEEEEEEEEETTTTEEEEEETTTTEE--EEEEGGGEEC
T ss_pred EEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCE--EEEeHHHcEe
Confidence 4445678999999999998878899999744332 3345554443
No 267
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=32.00 E-value=11 Score=31.51 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|+.|||||+..
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999999863
No 268
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=31.95 E-value=18 Score=35.17 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=14.1
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..+.-+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35778999999999865
No 269
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=31.94 E-value=8.9 Score=34.96 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.2
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588889999999999999755
No 270
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.91 E-value=19 Score=40.06 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.3
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 689999999999999999764
No 271
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=31.82 E-value=9.1 Score=32.98 Aligned_cols=15 Identities=40% Similarity=0.257 Sum_probs=12.1
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|--.|++|||||+.+
T Consensus 9 i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 9 IGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999875
No 272
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=31.72 E-value=11 Score=31.70 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.9
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367789999999986
No 273
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=31.72 E-value=13 Score=36.55 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=15.3
Q ss_pred hcCcCceeeeeccCCCCCceee
Q psy23 105 FEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 105 l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
++|.+ ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 34444 578899999999984
No 274
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=31.59 E-value=13 Score=39.06 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=19.6
Q ss_pred HHhcCcCceeeeeccCCCCCceeecc
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
.++.-.++.++..|..|||||++|..
T Consensus 18 ~av~~~~g~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 18 EAVRTTEGPLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp HHHHCCSSCEEEEECTTSCHHHHHHH
T ss_pred HHHhCCCCCEEEEEcCCCCHHHHHHH
Confidence 33333467788899999999999854
No 275
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=31.40 E-value=19 Score=33.75 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=19.3
Q ss_pred HHHHHhcCc-CceeeeeccCCCCCceee
Q psy23 100 LVKTIFEGG-MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 100 lv~~~l~G~-n~ti~aYGqtgSGKT~Tm 126 (386)
+...+-.|- ...++-||+.|+|||.+.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 344444453 446899999999999875
No 276
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=31.31 E-value=19 Score=39.77 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.5
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+.|-||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 799999999999999999775
No 277
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.18 E-value=11 Score=33.03 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
..+-.|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567899999999974
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=31.12 E-value=9.7 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.2
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|.-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45778899999999875
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=31.05 E-value=9.9 Score=32.69 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|...|+.|||||..+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999864
No 280
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=31.02 E-value=11 Score=36.21 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHhcCcCceeeeeccCCCCCceee
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 457899999999999999999765
No 281
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=30.96 E-value=11 Score=31.83 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999864
No 282
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=30.84 E-value=12 Score=30.84 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3677899999999753
No 283
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=30.83 E-value=19 Score=34.13 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=23.0
Q ss_pred hhHHHHHHhc-CcC--ceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFE-GGM--ATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~-G~n--~ti~aYGqtgSGKT~Tm~ 127 (386)
.-+-++.++. |+. ..+.-||++|||||..+.
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3466888886 443 456789999999998753
No 284
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=30.50 E-value=10 Score=34.08 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 34 ~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 34 VSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 456799999999765
No 285
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=30.42 E-value=10 Score=31.95 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|+.|+|||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 286
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=30.16 E-value=14 Score=33.84 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=20.8
Q ss_pred HHHHHHhcCcCc--eeeeeccCCCCCceee
Q psy23 99 PLVKTIFEGGMA--TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~G~n~--ti~aYGqtgSGKT~Tm 126 (386)
+.++.+.-|+.. .+.-.|++|+|||..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 456777766543 4667899999999886
No 287
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=30.02 E-value=11 Score=33.61 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.7
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999865
No 288
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=30.01 E-value=19 Score=33.50 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=23.1
Q ss_pred hhHHHHHHhcC-cC--ceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEG-GM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G-~n--~ti~aYGqtgSGKT~Tm 126 (386)
.-+-++.++.| +. ..+..||++|+|||..+
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 45778888864 32 45789999999999875
No 289
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=29.95 E-value=11 Score=38.01 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=19.0
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+++.+++|.+ ++..++||||||.+
T Consensus 32 ~~i~~il~g~d--~lv~apTGsGKTl~ 56 (523)
T 1oyw_A 32 EIIDTVLSGRD--CLVVMPTGGGKSLC 56 (523)
T ss_dssp HHHHHHHTTCC--EEEECSCHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCcHHHHH
Confidence 45667778876 46678999999974
No 290
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=29.93 E-value=18 Score=37.22 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=19.4
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+-..+-.| ..++-+|++|+|||..+
T Consensus 51 ~~l~~~i~~g--~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 51 EVIKTAANQK--RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHHHTT--CCEEEECCTTSSHHHHH
T ss_pred hhccccccCC--CEEEEEeCCCCCHHHHH
Confidence 3344444456 46788999999999886
No 291
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=29.76 E-value=10 Score=39.12 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
.-++..|.||||||+.|
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 45788999999999886
No 292
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=29.71 E-value=11 Score=33.00 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=20.1
Q ss_pred HHHHHHhc-Cc--CceeeeeccCCCCCceee
Q psy23 99 PLVKTIFE-GG--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~-G~--n~ti~aYGqtgSGKT~Tm 126 (386)
|-+|.++. |+ ...++.+|.+|+|||..+
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 44567776 43 345788999999999654
No 293
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=29.61 E-value=12 Score=31.26 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999863
No 294
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=29.53 E-value=19 Score=33.66 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=22.7
Q ss_pred hhHHHHHHhcC-c--CceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEG-G--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G-~--n~ti~aYGqtgSGKT~Tm 126 (386)
.-+-++.++.| + ...+.-||++|+|||..+
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 45678888854 3 345788999999999875
No 295
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=29.49 E-value=12 Score=32.22 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999864
No 296
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=29.41 E-value=19 Score=35.52 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 567889999999987
No 297
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=29.34 E-value=13 Score=32.18 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.1
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
++.+|.+|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 67899999999854
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=29.12 E-value=13 Score=31.80 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999864
No 299
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=29.10 E-value=11 Score=38.35 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.5
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++-||++|+|||+.+
T Consensus 109 ~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CEEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788999999999875
No 300
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=28.99 E-value=13 Score=32.68 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999864
No 301
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=28.95 E-value=26 Score=33.85 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.4
Q ss_pred cCcCceeeeeccCCCCCceee
Q psy23 106 EGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 106 ~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.|.-..|+-+|..|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 566667888999999999875
No 302
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=28.92 E-value=13 Score=31.38 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999854
No 303
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=28.82 E-value=13 Score=39.12 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=15.8
Q ss_pred HhcCcCceeeeeccCCCCCceee
Q psy23 104 IFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 104 ~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.++|. .++..|+||||||+.+
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYHA 172 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHHH
T ss_pred hcCCC--EEEEEcCCCCCHHHHH
Confidence 34443 5788999999999854
No 304
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=28.64 E-value=16 Score=30.15 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3467899999999865
No 305
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=28.40 E-value=13 Score=33.55 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=13.9
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35778899999999864
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=28.35 E-value=13 Score=32.27 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999753
No 307
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=28.25 E-value=17 Score=34.03 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=20.5
Q ss_pred hHHHHHHhcCcCceeeeeccCCCCCceee
Q psy23 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 98 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
..+...+-.|-.-.++-||+.|+|||.+.
T Consensus 7 ~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 7 ETLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 33444444566557888999999998765
No 308
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=28.22 E-value=24 Score=32.79 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=13.1
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|--.|++|||||+.+
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34555699999999875
No 309
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=28.10 E-value=14 Score=32.02 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999864
No 310
>1uhe_B Aspartate 1-decarboxylase beta chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_B*
Probab=27.67 E-value=26 Score=20.56 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.7
Q ss_pred ccceeEEeEEeeecCCC
Q psy23 6 VWGRIHSAIVSSLHPEG 22 (386)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (386)
..+.||.|+|+..+++.
T Consensus 6 lksKiHratVT~a~L~Y 22 (26)
T 1uhe_B 6 LYSKIHRATITDANLNY 22 (26)
T ss_dssp EEEEEEEEECCEEETTC
T ss_pred hhhhhcceEEecccccc
Confidence 46789999999887653
No 311
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=27.65 E-value=12 Score=38.11 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.2
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
.-++..|.||||||..+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 44688999999999865
No 312
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=27.59 E-value=34 Score=38.14 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=19.2
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
++++.-.|...-++..|+||||||..
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 33444447766789999999999965
No 313
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=27.37 E-value=26 Score=33.35 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=22.2
Q ss_pred hhHHHHHHhcC-c--CceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFEG-G--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~G-~--n~ti~aYGqtgSGKT~Tm 126 (386)
.-+-++.+|.| + ...+.-+|++|||||..+
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45668888864 2 345678899999999865
No 314
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=27.20 E-value=15 Score=30.80 Aligned_cols=14 Identities=43% Similarity=0.408 Sum_probs=11.7
Q ss_pred eeeeccCCCCCcee
Q psy23 112 CFAYGQTGSGKTHT 125 (386)
Q Consensus 112 i~aYGqtgSGKT~T 125 (386)
|.-.|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999974
No 315
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=27.14 E-value=15 Score=31.08 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|.-.|..|||||+..
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 566799999999753
No 316
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=27.12 E-value=25 Score=33.31 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|--.|++|||||+++
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999875
No 317
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=27.07 E-value=15 Score=32.73 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.3
Q ss_pred eeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 111 TCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
.|+..|+.||||++-.-= -....|+......+||+.
T Consensus 31 iI~llGpPGsGKgTqa~~------L~~~~g~~hIstGdllR~ 66 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEK------LVQKFHFNHLSSGDLLRA 66 (217)
T ss_dssp EEEEECCTTCCHHHHHHH------HHHHHCCEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH------HHHHHCCceEcHHHHHHH
Confidence 477889999999764200 012345666666677764
No 318
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=27.04 E-value=13 Score=31.97 Aligned_cols=16 Identities=38% Similarity=0.339 Sum_probs=12.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999998765
No 319
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=27.00 E-value=14 Score=31.48 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=12.9
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|..|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3667899999999764
No 320
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.78 E-value=15 Score=32.35 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=20.8
Q ss_pred eeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 112 CFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
|+-.|+.||||++-.-= -....|+......+||+.
T Consensus 3 Iil~GpPGsGKgTqa~~------La~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR------LAKEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEECSTTSSHHHHHHH------HHHHHCCEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH------HHHHHCCeEEcHHHHHHH
Confidence 67789999999863200 012345555556666653
No 321
>3plx_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=26.76 E-value=23 Score=21.02 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=13.8
Q ss_pred ccceeEEeEEeeecCCC
Q psy23 6 VWGRIHSAIVSSLHPEG 22 (386)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (386)
..+.||.|+|+..+++.
T Consensus 9 LksKiHratVT~a~L~Y 25 (27)
T 3plx_A 9 LKSKIHRASVTEARLDY 25 (27)
T ss_dssp EEEEEEEEECCEEETTC
T ss_pred HHHhhhceEEecccccc
Confidence 46789999999888754
No 322
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=26.75 E-value=17 Score=32.39 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=14.8
Q ss_pred cCceeeeeccCCCCCceee
Q psy23 108 GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm 126 (386)
+...|+-.|+||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3455788899999998764
No 323
>1vc3_A L-aspartate-alpha-decarboxylase light chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_A
Probab=26.74 E-value=28 Score=20.44 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.6
Q ss_pred ccceeEEeEEeeecCCC
Q psy23 6 VWGRIHSAIVSSLHPEG 22 (386)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (386)
..+.||.|+|+..+++.
T Consensus 6 lksKiHratVT~a~L~Y 22 (26)
T 1vc3_A 6 FHAKIHRATVTQADLHY 22 (26)
T ss_dssp EEEEEEEEECCEEETTC
T ss_pred hhhhhcceEEecccccc
Confidence 46789999999887653
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=26.45 E-value=15 Score=31.35 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=14.5
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
...|+..|..|||||+..
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788899999999864
No 325
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.43 E-value=15 Score=32.37 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.0
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-.|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999864
No 326
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=26.42 E-value=24 Score=39.20 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=19.5
Q ss_pred HHHHHHhcCcCceeeeeccCCCCCcee
Q psy23 99 PLVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 99 plv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
..+..+++|.+ +++.++||||||..
T Consensus 85 ~ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 85 LWAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 35666778865 67899999999983
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=26.37 E-value=15 Score=30.89 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=13.4
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|...|..|||||+..
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 34667899999999864
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=26.30 E-value=16 Score=30.10 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=13.6
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-.|..|||||+.-
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35678899999999753
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=26.30 E-value=15 Score=31.18 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+..
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999999864
No 330
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=26.06 E-value=23 Score=39.00 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHhcCcCceeeeeccCCCCCceee
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..++.|.+ ++..++||||||...
T Consensus 95 i~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 95 ISCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHHH
Confidence 344556654 788999999999763
No 331
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=25.89 E-value=17 Score=34.87 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|+||||||..
T Consensus 42 lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 42 LLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 578889999999874
No 332
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=25.89 E-value=14 Score=32.89 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=11.9
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 33 ~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 33 VSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999765
No 333
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=25.87 E-value=14 Score=34.79 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|--.|++|||||+.+
T Consensus 92 ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 4455699999999876
No 334
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=25.76 E-value=13 Score=29.75 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999764
No 335
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.58 E-value=14 Score=34.94 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=13.6
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.|...|++|+|||+|+.
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45566999999999873
No 336
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=25.57 E-value=16 Score=36.39 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.6
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45899999999999864
No 337
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=25.47 E-value=23 Score=33.88 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=22.5
Q ss_pred hhHHHHHHhc--Cc--CceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFE--GG--MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~--G~--n~ti~aYGqtgSGKT~Tm 126 (386)
.-+-++.++. |+ ...+..||+.|||||..+
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 4556788887 44 345788999999999875
No 338
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.43 E-value=16 Score=31.81 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|..|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999754
No 339
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=25.42 E-value=18 Score=40.74 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=19.5
Q ss_pred HhcCcCceeeeeccCCCCCceeecc
Q psy23 104 IFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 104 ~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
++.--+..++..|..|||||++|..
T Consensus 18 ~i~~~~~~~~v~a~AGSGKT~vl~~ 42 (1232)
T 3u4q_A 18 AIVSTGQDILVAAAAGSGKTAVLVE 42 (1232)
T ss_dssp HHHCCSSCEEEEECTTCCHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCcHHHHHHH
Confidence 3333477889999999999999854
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=25.16 E-value=17 Score=31.13 Aligned_cols=15 Identities=40% Similarity=0.361 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|.-.|..|||||+..
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999865
No 341
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=25.14 E-value=15 Score=38.50 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=14.1
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..++..|+||||||...
T Consensus 40 ~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 40 KNALISIPTASGKTLIA 56 (720)
T ss_dssp CEEEEECCGGGCHHHHH
T ss_pred CcEEEEcCCccHHHHHH
Confidence 45788999999999654
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=25.12 E-value=17 Score=31.40 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.2
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|++|||||+..
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999865
No 343
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=24.93 E-value=14 Score=30.93 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.4
Q ss_pred cCceeeeeccCCCCCceee
Q psy23 108 GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 108 ~n~ti~aYGqtgSGKT~Tm 126 (386)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457889999999999755
No 344
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=24.72 E-value=19 Score=34.29 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|+||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 345
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=24.65 E-value=31 Score=35.89 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=32.2
Q ss_pred eeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeecc
Q psy23 77 SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 77 f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 128 (386)
|....=|.|...|..-++. +++.+-+|... ....|.|||||||+|-.
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 4444556778888777665 45555566432 34579999999999953
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=24.44 E-value=15 Score=32.28 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=12.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3455799999999754
No 347
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=24.35 E-value=19 Score=34.16 Aligned_cols=15 Identities=47% Similarity=0.598 Sum_probs=12.5
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|+||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 467789999999864
No 348
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=24.29 E-value=18 Score=30.47 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|...|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999998754
No 349
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=24.27 E-value=19 Score=34.42 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.0
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.++-||++|+|||+...
T Consensus 125 viLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp EEEEECSCSSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 45789999999998753
No 350
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=24.25 E-value=15 Score=33.07 Aligned_cols=15 Identities=40% Similarity=0.820 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 27 ~~liG~nGsGKSTLl 41 (240)
T 2onk_A 27 CVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 446699999999865
No 351
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=24.08 E-value=15 Score=33.84 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=11.8
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
.-.|++|||||..+
T Consensus 38 ~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 38 AILGGNGVGKSTLF 51 (275)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45699999999876
No 352
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=24.06 E-value=18 Score=31.38 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999753
No 353
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=24.06 E-value=16 Score=33.22 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=14.1
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..+.-+|++|||||..+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35678899999999875
No 354
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=24.05 E-value=18 Score=31.40 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+-.|++|+|||.-+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998743
No 355
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=24.00 E-value=26 Score=37.35 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=16.5
Q ss_pred HHHHhcCcCceeeeeccCCCCCcee
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
+..++.+. -.++..|+||||||..
T Consensus 102 i~~~l~~~-~~vii~gpTGSGKTtl 125 (773)
T 2xau_A 102 FLKLYQNN-QIMVFVGETGSGKTTQ 125 (773)
T ss_dssp HHHHHHHC-SEEEEECCTTSSHHHH
T ss_pred HHHHHhCC-CeEEEECCCCCCHHHH
Confidence 33444442 3467889999999993
No 356
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=23.87 E-value=15 Score=35.40 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=12.0
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
.-.|++|||||..|
T Consensus 34 ~llGpsGsGKSTLL 47 (359)
T 3fvq_A 34 FIIGASGCGKTTLL 47 (359)
T ss_dssp EEEESTTSSHHHHH
T ss_pred EEECCCCchHHHHH
Confidence 45799999999876
No 357
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=23.86 E-value=23 Score=36.90 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=14.9
Q ss_pred CceeeeeccCCCCCceee
Q psy23 109 MATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm 126 (386)
+..++..|+||||||...
T Consensus 46 ~~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCcEEEEcCCCCcHHHHH
Confidence 345788999999999875
No 358
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=23.77 E-value=16 Score=32.80 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 34 ~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999865
No 359
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.74 E-value=15 Score=32.54 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=11.8
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
.-.|++|||||..|
T Consensus 39 ~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 39 NFHGPNGIGKTTLL 52 (214)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45799999999876
No 360
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=23.64 E-value=19 Score=39.86 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=14.0
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
-.+...+||||||.|++
T Consensus 302 ~gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 302 GGYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp SEEEEECTTSSHHHHHH
T ss_pred CEEEEecCCCCHHHHHH
Confidence 35677899999999975
No 361
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=23.63 E-value=16 Score=34.43 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=13.6
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
.++.-+|++|||||+.+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 34567899999999865
No 362
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.60 E-value=16 Score=32.80 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||+.+
T Consensus 35 ~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 35 VTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999876
No 363
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=23.52 E-value=15 Score=29.36 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999754
No 364
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=23.43 E-value=16 Score=33.13 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 36 ~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999876
No 365
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=23.42 E-value=16 Score=31.19 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=12.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|.+|||||..+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3456799999998865
No 366
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=23.37 E-value=21 Score=34.04 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=12.3
Q ss_pred eeeeeccCCCCCcee
Q psy23 111 TCFAYGQTGSGKTHT 125 (386)
Q Consensus 111 ti~aYGqtgSGKT~T 125 (386)
.|+..|+||||||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 456789999999875
No 367
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=23.23 E-value=26 Score=36.80 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=14.0
Q ss_pred eeeeeccCCCCCceeec
Q psy23 111 TCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm~ 127 (386)
.++..|+||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 47889999999997653
No 368
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=23.12 E-value=17 Score=33.23 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.6
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
.-.|++|||||..+
T Consensus 36 ~liG~nGsGKSTLl 49 (262)
T 1b0u_A 36 SIIGSSGSGKSTFL 49 (262)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45699999999865
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=23.04 E-value=19 Score=31.34 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999753
No 370
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=22.93 E-value=17 Score=35.09 Aligned_cols=15 Identities=40% Similarity=0.631 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 32 ~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 32 VALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 345699999999987
No 371
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=22.88 E-value=19 Score=30.85 Aligned_cols=16 Identities=38% Similarity=0.223 Sum_probs=12.5
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|.+|||||+.+
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999754
No 372
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=22.86 E-value=17 Score=32.86 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 38 ~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999865
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=22.85 E-value=19 Score=30.70 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQS 27 (212)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999999864
No 374
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=22.84 E-value=23 Score=36.58 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=18.1
Q ss_pred HHHHhcCcCceeeeeccCCCCCceee
Q psy23 101 VKTIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 101 v~~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
+..+++|.+ ++..++||||||...
T Consensus 180 i~~l~~g~d--vlv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRL--TIMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCE--EEECCCTTSSTTTTH
T ss_pred HHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 445566665 578899999999983
No 375
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=22.83 E-value=19 Score=32.08 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.9
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
..|+..|..|||||+-.
T Consensus 30 ~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999998753
No 376
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=22.83 E-value=17 Score=35.42 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=12.1
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
--.|++|||||.+|
T Consensus 33 ~llGpsGsGKSTLL 46 (381)
T 3rlf_A 33 VFVGPSGCGKSTLL 46 (381)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEEcCCCchHHHHH
Confidence 45799999999986
No 377
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=22.73 E-value=17 Score=33.20 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||+.+
T Consensus 36 ~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345699999999876
No 378
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=22.65 E-value=17 Score=32.62 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 31 ~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999876
No 379
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=22.60 E-value=18 Score=31.45 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.1
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4467899999999765
No 380
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=22.55 E-value=17 Score=34.96 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 44 ~~llGpnGsGKSTLL 58 (355)
T 1z47_A 44 VGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345699999999987
No 381
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=22.47 E-value=18 Score=33.18 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=11.8
Q ss_pred eeeccCCCCCceee
Q psy23 113 FAYGQTGSGKTHTM 126 (386)
Q Consensus 113 ~aYGqtgSGKT~Tm 126 (386)
--.|++|||||..+
T Consensus 41 ~liG~nGsGKSTLl 54 (266)
T 4g1u_C 41 AIIGPNGAGKSTLL 54 (266)
T ss_dssp EEECCTTSCHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 35699999999876
No 382
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=22.47 E-value=20 Score=32.70 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.4
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|+..|.+|||||+..
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999854
No 383
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=22.40 E-value=28 Score=33.47 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=22.8
Q ss_pred hhHHHHHHhc--CcC--ceeeeeccCCCCCceee
Q psy23 97 AKPLVKTIFE--GGM--ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 97 ~~plv~~~l~--G~n--~ti~aYGqtgSGKT~Tm 126 (386)
.-+-++.++. |+. ..+..||++|||||+.+
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 4567888887 443 45788999999999765
No 384
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=22.25 E-value=18 Score=33.00 Aligned_cols=15 Identities=47% Similarity=0.793 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 49 ~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 49 CALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 385
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=22.19 E-value=18 Score=34.96 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 32 ~~llGpnGsGKSTLL 46 (362)
T 2it1_A 32 MALLGPSGSGKSTLL 46 (362)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 345699999999987
No 386
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=22.17 E-value=21 Score=31.29 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|+..|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999753
No 387
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=22.14 E-value=18 Score=35.05 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.4
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 32 ~~llGpnGsGKSTLL 46 (372)
T 1g29_1 32 MILLGPSGCGKTTTL 46 (372)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCcHHHHHH
Confidence 345699999999986
No 388
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=22.03 E-value=18 Score=33.13 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 53 ~~liG~NGsGKSTLl 67 (263)
T 2olj_A 53 VVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCcHHHHH
Confidence 345699999999876
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=21.94 E-value=21 Score=30.82 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|..|||||+..
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999854
No 390
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=21.93 E-value=26 Score=38.96 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.2
Q ss_pred HHHHHhcCcCceeeeeccCCCCCcee
Q psy23 100 LVKTIFEGGMATCFAYGQTGSGKTHT 125 (386)
Q Consensus 100 lv~~~l~G~n~ti~aYGqtgSGKT~T 125 (386)
.+..++.|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 4555567754 68899999999965
No 391
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=21.78 E-value=18 Score=32.15 Aligned_cols=15 Identities=33% Similarity=0.286 Sum_probs=12.0
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
|--.|+.|||||+.+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344599999999876
No 392
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=21.59 E-value=17 Score=29.15 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=13.8
Q ss_pred ceeeeeccCCCCCceee
Q psy23 110 ATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 110 ~ti~aYGqtgSGKT~Tm 126 (386)
.-|+..|.+|+|||..+
T Consensus 6 ~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45778899999999754
No 393
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=21.57 E-value=23 Score=35.57 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=20.6
Q ss_pred HHHHHHhc-C--cCceeeeeccCCCCCceee
Q psy23 99 PLVKTIFE-G--GMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 99 plv~~~l~-G--~n~ti~aYGqtgSGKT~Tm 126 (386)
+.++++.- | -...+.-.|++|||||..+
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~ 56 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 56 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 46777776 3 2345677899999999875
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=21.56 E-value=23 Score=29.56 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=12.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|...|..|||||+..
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999998754
No 395
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=21.46 E-value=45 Score=27.53 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.7
Q ss_pred HhcCcCceeeeeccCCCCCceee
Q psy23 104 IFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 104 ~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+.-....|+..|..|+|||.-+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45566778899999999998765
No 396
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.45 E-value=19 Score=32.83 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 44 ~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999876
No 397
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=21.43 E-value=19 Score=34.92 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=12.5
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 40 ~~llGpnGsGKSTLL 54 (372)
T 1v43_A 40 LVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 345699999999987
No 398
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=21.41 E-value=22 Score=30.12 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=13.0
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4667799999999864
No 399
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=21.41 E-value=19 Score=32.07 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=12.0
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 37 ~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 37 LAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999865
No 400
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=21.07 E-value=1e+02 Score=20.66 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCccccceeEEeEEeeecCCCceEEEEeeecC
Q psy23 2 AQNSVWGRIHSAIVSSLHPEGRSVTVEWFEKG 33 (386)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~ 33 (386)
|.-+.-|.-..|+|.++..++..+.|-...=|
T Consensus 10 A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYG 41 (54)
T 3s6w_A 10 ALYWEDNKFYRAEVEALHSSGMTAVVKFIDYG 41 (54)
T ss_dssp EEETTTTEEEEEEEEEC--CCSEEEEEETTTC
T ss_pred EEECCCCCEEEEEEEEEeCCCCEEEEEEEccC
Confidence 33455688999999999988888999987433
No 401
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=21.05 E-value=16 Score=32.27 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.8
Q ss_pred CceeeeeccCCCCCceeecc
Q psy23 109 MATCFAYGQTGSGKTHTMGG 128 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~Tm~G 128 (386)
.+.|+.|+..|.|||+.-+|
T Consensus 28 ~g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57799999999999999776
No 402
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=21.04 E-value=24 Score=30.99 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=13.5
Q ss_pred CceeeeeccCCCCCcee
Q psy23 109 MATCFAYGQTGSGKTHT 125 (386)
Q Consensus 109 n~ti~aYGqtgSGKT~T 125 (386)
---.|-||+.|||||.-
T Consensus 20 g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE 36 (195)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred eEEEEEECCCCCcHHHH
Confidence 33568899999999943
No 403
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=20.98 E-value=19 Score=32.85 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..+
T Consensus 49 ~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 446799999999875
No 404
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=20.91 E-value=22 Score=30.30 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.3
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.|.-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQS 26 (215)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999864
No 405
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=20.91 E-value=19 Score=32.59 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 34 ~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999876
No 406
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=20.88 E-value=20 Score=32.42 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||+.+
T Consensus 32 ~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 32 HALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 346799999999876
No 407
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=20.88 E-value=29 Score=33.85 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=22.7
Q ss_pred hhHHHHHHhc-Cc--CceeeeeccCCCCCceeec
Q psy23 97 AKPLVKTIFE-GG--MATCFAYGQTGSGKTHTMG 127 (386)
Q Consensus 97 ~~plv~~~l~-G~--n~ti~aYGqtgSGKT~Tm~ 127 (386)
.-+-++.+|. |+ ...+.-+|++|||||..+.
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 4566888884 43 2456789999999998764
No 408
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=20.86 E-value=19 Score=37.49 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=16.4
Q ss_pred HHhcCcCceeeeeccCCCCCceee
Q psy23 103 TIFEGGMATCFAYGQTGSGKTHTM 126 (386)
Q Consensus 103 ~~l~G~n~ti~aYGqtgSGKT~Tm 126 (386)
.+++|. .++..|+||||||...
T Consensus 36 ~i~~~~--~~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 36 KVFSGK--NLLLAMPTAAGKTLLA 57 (702)
T ss_dssp HHTTCS--CEEEECSSHHHHHHHH
T ss_pred HHhCCC--cEEEEcCCccHHHHHH
Confidence 344554 4688999999999765
No 409
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=20.81 E-value=20 Score=32.93 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 48 ~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 48 TALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999875
No 410
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=20.78 E-value=27 Score=33.40 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=12.8
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
..+-+|++|+|||.-+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999654
No 411
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.73 E-value=20 Score=33.12 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.2
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 50 ~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 50 WILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345699999999876
No 412
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=20.50 E-value=20 Score=32.78 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=12.9
Q ss_pred eeeeeccCCCCCceee
Q psy23 111 TCFAYGQTGSGKTHTM 126 (386)
Q Consensus 111 ti~aYGqtgSGKT~Tm 126 (386)
.+.-.|++|||||+.|
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 413
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=20.50 E-value=20 Score=32.47 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|++|||||..|
T Consensus 29 ~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 346699999999875
No 414
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=20.38 E-value=19 Score=34.45 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.0
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
.+-+|++|||||.-+
T Consensus 26 ~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 346999999999654
No 415
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.27 E-value=1e+02 Score=23.34 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCccccceeEEeEEeeecCCCceEEEEeeecCccCCeEEeeeeeeccCCCC
Q psy23 2 AQNSVWGRIHSAIVSSLHPEGRSVTVEWFEKGETKGKEVELDALFSLNSNL 52 (386)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~gk~~~~~~i~~~n~~l 52 (386)
|+-+.-|....|+|.+|+.....|+|-...=|. --++++..|..+.+.+
T Consensus 19 A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN--~E~V~~~~Lrp~~~~~ 67 (88)
T 1g5v_A 19 AIWSEDGCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPICEV 67 (88)
T ss_dssp EECTTTCCEEEEEEEEEETTTTEEEEEETTTCC--EEEEEGGGCBCCC---
T ss_pred EEECCCCCEEEEEEEEecCCCCEEEEEEecCCC--EEEEcHHHcccCChhh
Confidence 444567899999999999877789999863333 3456777777666654
No 416
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=20.02 E-value=25 Score=32.88 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=12.3
Q ss_pred eeeeccCCCCCceee
Q psy23 112 CFAYGQTGSGKTHTM 126 (386)
Q Consensus 112 i~aYGqtgSGKT~Tm 126 (386)
+.-.|..|||||..|
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 455799999999876
Done!