RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy23
(386 letters)
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 384 bits (988), Expect = e-133
Identities = 156/264 (59%), Positives = 188/264 (71%), Gaps = 29/264 (10%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+R + KPL+ +FEGG+ATCFAYGQTGSGKT+TM GD ++G+YA+AA+D+F+L
Sbjct: 69 YRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDEN------QEGLYALAARDIFRL 122
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
L P +L V+ SFFEIY GK+FDLL ++ +L VLEDGK VQIVGLTE+ V SV+E
Sbjct: 123 LAQPN---DDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDE 179
Query: 213 VLKLIQHG-----------NSAS--------INNICFSFLQVHGKFSLIDLAGNERGADT 253
+L+LI+ G N S I ++ GK S IDLAG+ERGADT
Sbjct: 180 LLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLNKLLGKLSFIDLAGSERGADT 239
Query: 254 SSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMI 313
S +RQTR EGAEINKSLLALKECIRAL AH+PFR SKLTQVLRDSFIG+ S+T MI
Sbjct: 240 SEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGN-SKTVMI 298
Query: 314 AMISPGMSSCEHSLNTLRYADRVK 337
A ISP SSCEH+LNTLRYADRVK
Sbjct: 299 ATISPSASSCEHTLNTLRYADRVK 322
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 298 bits (766), Expect = e-100
Identities = 114/274 (41%), Positives = 160/274 (58%), Gaps = 32/274 (11%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ +AKPLV+++ EG T FAYGQTGSGKT+TM GD + + GI A +D+F+
Sbjct: 58 YEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGD----PPEEEPGIIPRALEDLFER 113
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA---EKAKLRVLEDGKQQVQIVGLTEQVVDS 209
++ K R + V S+ EIY+ K++DLL+ +K KLR+ ED K+ V + GLTE V S
Sbjct: 114 IEERKERKWSFSVRVSYLEIYNEKIYDLLSPSSKKKKLRIREDPKKGVYVKGLTEVEVTS 173
Query: 210 VEEVLKLIQHGN------SASIN-----------------NICFSFLQVHGKFSLIDLAG 246
EEVL+L++ GN S ++N N GK +L+DLAG
Sbjct: 174 AEEVLELLELGNKNRTVASTNMNEESSRSHAIFTITVEQRNRDTDGSVKTGKLNLVDLAG 233
Query: 247 NERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK-GAHLPFRASKLTQVLRDSFIG 305
+ER + T +A + E A INKSL AL I AL +H+P+R SKLT++L+DS G
Sbjct: 234 SERASKTGAAGGRRLKEAANINKSLSALGNVINALAENQSSHIPYRDSKLTRLLQDSL-G 292
Query: 306 DKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
S+T MIA ISP S+ E +L+TLR+A R K +
Sbjct: 293 GNSKTLMIANISPSDSNYEETLSTLRFASRAKNI 326
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 270 bits (693), Expect = 1e-88
Identities = 110/274 (40%), Positives = 142/274 (51%), Gaps = 36/274 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F +A PLV ++ EG AT FAYGQTGSGKT+TM G GI A KD+F+
Sbjct: 64 FEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDS------PGIIPRALKDLFEK 117
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAE-KAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ + G V S+ EIY+ K+ DLL KL + ED K V + GLTE V S E
Sbjct: 118 IDKREE-GWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIREDEKGGVYVKGLTEISVSSFE 176
Query: 212 EVLKLIQHGN----------------SASINNICF--------SFLQVHGKFSLIDLAGN 247
EV L++ GN S ++ I S K +L+DLAG+
Sbjct: 177 EVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSGSGKASKLNLVDLAGS 236
Query: 248 ERGADTSSANRQTRMEGAEINKSLLALKECIRALG--RKGAHLPFRASKLTQVLRDSFIG 305
ER T A E INKSL AL I AL K H+P+R SKLT++L+DS G
Sbjct: 237 ERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQDSL-G 294
Query: 306 DKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
S+T MIA +SP S+ E +L+TLR+A R KE+
Sbjct: 295 GNSKTLMIANVSPSSSNLEETLSTLRFASRAKEI 328
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 257 bits (660), Expect = 9e-84
Identities = 108/274 (39%), Positives = 143/274 (52%), Gaps = 37/274 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ +AKPLV+++ EG T FAYGQTGSGKT+TM G GI A +D+F L
Sbjct: 63 YETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGS------PKDPGIIPRALEDLFNL 116
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAE---KAKLRVLEDGKQQVQIVGLTEQVVDS 209
+ K + + VS S+ EIY+ KV+DLL+ L + ED K V + GLTE V S
Sbjct: 117 IDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGS 176
Query: 210 VEEVLKLIQHGN----------------SASI--------NNICFSFLQVHGKFSLIDLA 245
E+ L L+Q G S +I N K +L+DLA
Sbjct: 177 AEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLA 236
Query: 246 GNERGADTSSANRQTRMEGAEINKSLLALKECIRAL--GRKGAHLPFRASKLTQVLRDSF 303
G+ER T A E INKSL AL I AL G+K H+P+R SKLT++L+DS
Sbjct: 237 GSERAKKT-GAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSL 295
Query: 304 IGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
G S+T MIA ISP + + +L+TLR+A R K
Sbjct: 296 GG-NSKTLMIANISPSSENYDETLSTLRFASRAK 328
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 215 bits (549), Expect = 5e-67
Identities = 108/276 (39%), Positives = 149/276 (53%), Gaps = 40/276 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ + KPLV + G AT FAYG TG+GKTHTM G G+ + KD+F
Sbjct: 72 YENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDP------GLMVLTMKDLFDK 125
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK-LRVLEDGKQQVQIVGLTEQVVDSVE 211
++ K VS S+ EIY+ + DLL+ + L + ED Q + + GLTE S E
Sbjct: 126 IEERKDDK-EFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAE 184
Query: 212 EVLKLIQHGNSA---------SINNICFSFLQVH----------------GKFSLIDLAG 246
E+L+L+ GN + ++ + LQ+ GK SLIDLAG
Sbjct: 185 EILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAG 244
Query: 247 NERGADTSSANRQTRM-EGAEINKSLLALKECIRALG---RKGAHLPFRASKLTQVLRDS 302
+ER + T+ NR R+ EGA IN+SLLAL CI AL +K H+P+R SKLT++L+DS
Sbjct: 245 SERASATN--NRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDS 302
Query: 303 FIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKE 338
+G +T MIA ISP S E + NTL+YA+R K
Sbjct: 303 -LGGNCKTVMIANISPSSSHYEETHNTLKYANRAKN 337
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 195 bits (499), Expect = 1e-59
Identities = 106/281 (37%), Positives = 155/281 (55%), Gaps = 44/281 (15%)
Query: 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL-KSP 156
PLV +FEG AT AYGQTGSGKT+TMG F + + GI A + +FK + +
Sbjct: 63 APLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK 122
Query: 157 KYRGLNLHVSASFFEIYSGKVFDLL----AEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
L VS F E+Y+ +V DLL +EK+ +++ ED K + IVGLTE V+S +E
Sbjct: 123 DEPDFQLKVS--FLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQE 180
Query: 213 VLKLIQHGNSA------SINNIC------FS-FLQ-------------------VHGKFS 240
V+ ++ G+ + ++N+ F+ L+ + KF
Sbjct: 181 VMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFH 240
Query: 241 LIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG---RKGAHLPFRASKLTQ 297
+DLAG+ER T + + + EG IN LLAL I ALG +KG+H+P+R SKLT+
Sbjct: 241 FVDLAGSERLKKTGATGDRLK-EGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTR 299
Query: 298 VLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKE 338
+L+DS +G S T MIA +SP S+ E +LNTL+YA+R +
Sbjct: 300 LLQDS-LGGNSHTLMIACVSPADSNFEETLNTLKYANRARN 339
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 193 bits (492), Expect = 1e-58
Identities = 101/267 (37%), Positives = 137/267 (51%), Gaps = 34/267 (12%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSP 156
PLV++ +G FAYGQTGSGKT+TM G + GI A + +F +
Sbjct: 66 VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENP------GIIPRALEQLFNTAEEL 119
Query: 157 KYRGLNLHVSASFFEIYSGKVFDLLAE----KAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
K +G + ++AS EIY+ + DLLA K KL + D K + + LTE V S EE
Sbjct: 120 KEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEE 179
Query: 213 VLKLIQHGNS----ASIN-NI-------CFSFL----------QVHGKFSLIDLAGNERG 250
V +L+ G+ AS N N F Q GK +L+DLAG+ER
Sbjct: 180 VTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSER- 238
Query: 251 ADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRT 310
S A E INKSL AL + I AL K +H+P+R SKLT +L+DS +G S+T
Sbjct: 239 LKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDS-LGGNSKT 297
Query: 311 CMIAMISPGMSSCEHSLNTLRYADRVK 337
M ISP S+ +L +LR+A RV+
Sbjct: 298 LMFVNISPLESNLSETLCSLRFASRVR 324
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 188 bits (480), Expect = 6e-57
Identities = 104/273 (38%), Positives = 148/273 (54%), Gaps = 41/273 (15%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
AKP+V++ EG T FAYGQT SGKT TM GD Q + GI +A +D+F+ ++
Sbjct: 61 IAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQ------EPGIIPLAVRDIFQRIQD 114
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLAEKAK-LRVLEDGKQQVQIVGLTEQVVDSVEEVL 214
R L V S+ EIY+ K+ DLL+ + LR+ ED + V + GLTE++V S E +L
Sbjct: 115 TPDREFLLRV--SYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLL 172
Query: 215 KLIQHGN--------------------------SASINNICFSFLQVHGKFSLIDLAGNE 248
+LI G S + ++V +LIDLAG+E
Sbjct: 173 QLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRV-STLNLIDLAGSE 231
Query: 249 RGADTSSANRQTRMEGAEINKSLLALKECIRAL--GRKGAHLPFRASKLTQVLRDSFIGD 306
R + T + R R EG+ INKSLL L I L G+ H+P+R SKLT++L+ S G+
Sbjct: 232 RASQTGAGER--RKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGN 289
Query: 307 KSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
+RT +I ISP S E +LNTL++A R K++
Sbjct: 290 -ARTAIICTISPASSHVEETLNTLKFASRAKKV 321
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 179 bits (456), Expect = 5e-53
Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 46/283 (16%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F + L+ FEG FAYGQTGSGK++TM G + KGI +++F+
Sbjct: 73 FEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEE------KGIIPRLCEELFQR 126
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA----EKAKLRVLEDGKQQVQIVGLTEQVVD 208
++S K + L+ V S+ EIY+ KV DLL K L+V E + L++ V
Sbjct: 127 IESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVT 186
Query: 209 SVEEVLKLIQHGNSA----------------SINNICFS----------FLQVHGKFSLI 242
S E++ L++ GN + ++ I + + K SL+
Sbjct: 187 SYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLV 246
Query: 243 DLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL--------GRKGAHLPFRASK 294
DLAG+ER A ++ A EG+ INKSL L + I AL +K + +P+R S
Sbjct: 247 DLAGSER-ASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSV 305
Query: 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
LT +L+++ +G S+T MIA ISP + E +L+TLRYADR K
Sbjct: 306 LTWLLKEN-LGGNSKTAMIATISPADINYEETLSTLRYADRAK 347
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 167 bits (424), Expect = 2e-48
Identities = 95/281 (33%), Positives = 138/281 (49%), Gaps = 41/281 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDF-----QGKTQDCKKGIYAMAAK 147
+ P++ + G T FAYGQTG+GKT+TM GD GI A
Sbjct: 66 YSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALY 125
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLA----EKAKLRVLED--GKQQVQIVG 201
+F+ L+S + V S+ E+Y+ ++FDLL+ LR+ +D K V I G
Sbjct: 126 QLFEKLES---QNTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQG 182
Query: 202 LTEQVVDSVEEVLKLIQHG-----------NSASINNICFSFLQVH-------------- 236
L E V++ E LKL++ G N S + + +H
Sbjct: 183 LEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKI 242
Query: 237 GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLT 296
GK +L+DLAG+E S A + E IN+SLL L I AL K H+P+R SKLT
Sbjct: 243 GKLNLVDLAGSE-NIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLT 301
Query: 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
++L+DS +G +++T +IA ISP + E +L+TL YA R K
Sbjct: 302 RLLQDS-LGGRTKTSIIATISPASINLEETLSTLEYAHRAK 341
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 166 bits (422), Expect = 3e-48
Identities = 98/273 (35%), Positives = 140/273 (51%), Gaps = 35/273 (12%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ +A+PLV ++ EG T FAYGQTG+GKT TM G + +GI + +F
Sbjct: 66 YNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGV---REPPELRGIIPNSFAHIFGH 122
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLL--AEKAKLRVLEDGKQQVQIVGLTEQVVDSV 210
+ + + V S+ EIY+ +V DLL +K KL + E + V + L+ VV +
Sbjct: 123 IAKAE--NVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNA 180
Query: 211 EEVLKLIQHGN----------------SASINNICFSFLQV------H---GKFSLIDLA 245
EE+ KL+ GN S SI I + H GK +L+DLA
Sbjct: 181 EEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLA 240
Query: 246 GNERGADTSSANRQTRMEGAEINKSLLALKECIRAL-GRKGAHLPFRASKLTQVLRDSFI 304
G+ER + T A E +IN SL AL I AL K H+P+R SKLT++L+DS +
Sbjct: 241 GSERQSKT-GATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS-L 298
Query: 305 GDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
G S+T M A I P + + +L+TLRYA+R K
Sbjct: 299 GGNSKTVMCANIGPADYNYDETLSTLRYANRAK 331
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 165 bits (421), Expect = 3e-48
Identities = 108/272 (39%), Positives = 142/272 (52%), Gaps = 36/272 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ F AKP+V + G T FAYGQTGSGKT+TM G KGI D+F+
Sbjct: 61 YNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPG---DPELKGIIPRIVHDIFEH 117
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAE-KAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ S L HV S+ EIY K+ DLL K L+V ED + V + GLTE+ V S E
Sbjct: 118 ISSMD-ENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPE 176
Query: 212 EVLKLIQHGNSA----------------SINNICFSFLQVH--------GKFSLIDLAGN 247
EVL++I G S SI I + Q + GK L+DLAG+
Sbjct: 177 EVLEVINEGKSNRAVASTNMNEESSRSHSIFLI--TLKQENVETGSKKRGKLFLVDLAGS 234
Query: 248 ERGADTSSANRQTRMEGAEINKSLLALKECIRAL--GRKGAHLPFRASKLTQVLRDSFIG 305
E+ + T A QT E +INKSL AL I AL G+ H+P+R SKLT++L+DS +G
Sbjct: 235 EKVSKT-GAEGQTLEEAKKINKSLSALGNVINALTDGKS-THIPYRDSKLTRILQDS-LG 291
Query: 306 DKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
SRT +I SP + +L+TLR+ R K
Sbjct: 292 GNSRTTLIICCSPSSYNESETLSTLRFGARAK 323
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 156 bits (396), Expect = 1e-42
Identities = 105/276 (38%), Positives = 148/276 (53%), Gaps = 36/276 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ + KPL+ ++ G T FAYGQTGSGKT+TM G + + GI ++ K++F
Sbjct: 74 YEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSK 127
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
L + VS S+ EIY+ K++DLL + L + ED V++ GLTE+ V S E
Sbjct: 128 L-EDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKE 186
Query: 212 EVLKLIQHGN--------------SASINNICFSFLQVH--------GKFSLIDLAGNER 249
E+L L++ G S S + + K SL+DLAG+ER
Sbjct: 187 EILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSER 246
Query: 250 GADTSSANRQTRM-EGAEINKSLLALKECIRALGRKG--AHLPFRASKLTQVLRDSFIGD 306
A T NR TR+ EGA INKSLL L I ALG K H+P+R SKLT++L+DS +G
Sbjct: 247 AART--GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDS-LGG 303
Query: 307 KSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAAT 342
T +I ISP +S E ++NTL++A R K +
Sbjct: 304 NCNTRVICTISPSSNSFEETINTLKFASRAKSIKNK 339
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 147 bits (373), Expect = 3e-41
Identities = 92/267 (34%), Positives = 136/267 (50%), Gaps = 34/267 (12%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F KP+V + G AT FAYG TG+GKTHTM GD + G+ D+ ++
Sbjct: 65 FSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPN------EPGLIPRTLSDLLRM 118
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAK-LRVLEDGKQQVQIVGLTEQVVDSVE 211
+ + G S S++EIY+ KV+DLL K L + ED + IVGLT + + S+
Sbjct: 119 GRKQAWTG---AFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMA 175
Query: 212 EVLKLIQHGNS------------ASINNICF--------SFLQVHGKFSLIDLAGNERGA 251
E + + +S ++ S +Q+ GK +LIDLAG+E
Sbjct: 176 EFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKLNLIDLAGSEDNR 235
Query: 252 DTSSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRT 310
T N R+ E A IN SL L + + AL + +P+R SKLT++L+DS +G SR
Sbjct: 236 RTG--NEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDS-LGGGSRC 292
Query: 311 CMIAMISPGMSSCEHSLNTLRYADRVK 337
M+A I+P S + +L+TL +A R K
Sbjct: 293 IMVANIAPERSFYQDTLSTLNFASRSK 319
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 140 bits (355), Expect = 1e-38
Identities = 93/279 (33%), Positives = 137/279 (49%), Gaps = 36/279 (12%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKK--GIYAMAAKDVF 150
F+ KPLV+ G + FAYGQTGSGKT+TM G + G+ + +F
Sbjct: 59 FQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLF 118
Query: 151 KLLKSPKYR---GLNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQIVGLTEQV 206
L++ + + GL SF EIY+ ++ DLL L++ ED K+ V + LTE+
Sbjct: 119 SLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEY 178
Query: 207 VDSVEEVLKLIQHG------NSASIN------NICFSFL---------QVHGKFS---LI 242
V S E+V +++ G + S+N + F+ + + S L+
Sbjct: 179 VSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV 238
Query: 243 DLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR----KGAHLPFRASKLTQV 298
DLAG+ER D A E INKSL L I AL K H+P+R SKLT +
Sbjct: 239 DLAGSERQKDD-GAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFL 297
Query: 299 LRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
LRDS +G ++T +IA +SP +L+TL++A R K
Sbjct: 298 LRDS-LGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAK 335
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 140 bits (354), Expect = 2e-38
Identities = 95/273 (34%), Positives = 139/273 (50%), Gaps = 39/273 (14%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSP 156
AKP+V + +G T FAYGQTG+GKT TM G +D +G+ A + VF+ +
Sbjct: 69 AKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGG-TESYKD--RGLIPRALEQVFREVAMR 125
Query: 157 KYRGLNLHVSASFFEIYSGKVFDLLA-------EKAKLRVLEDGKQQVQIVGLTEQVVDS 209
+ +HV S+ EIY+ +++DLL + +LED +Q + + GL+ +
Sbjct: 126 ATKTYTVHV--SYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATT 183
Query: 210 VEEVLKLIQHG-----------NSASINNICF-------------SFLQVHGKFSLIDLA 245
EE L L+ G N AS + C S + K +L+DLA
Sbjct: 184 EEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLA 243
Query: 246 GNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRK-GAHLPFRASKLTQVLRDSFI 304
G+ER + T + Q E INKSL L++ I AL K H+P+R SKLT VLRDS +
Sbjct: 244 GSERVSKTGVSG-QVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDS-L 301
Query: 305 GDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
G +T M+A I S+ + +L+TLR+A RV
Sbjct: 302 GGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 130 bits (329), Expect = 1e-34
Identities = 83/298 (27%), Positives = 131/298 (43%), Gaps = 62/298 (20%)
Query: 81 KVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKG 140
KV T F +A PLV+ + +G + F YG T SGKT+TM QG D G
Sbjct: 61 KVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTM----QGSPGD--GG 114
Query: 141 IYAMAAKDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAE-------KAKLRVLEDG 193
I + +F + V S+ EIY+ ++DLL + + LR+ ED
Sbjct: 115 ILPRSLDVIFNSIG-------GYSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDH 167
Query: 194 KQQVQIVGLTEQVVDSVEEVLKLIQHGN----------------SASINNICFSFLQVHG 237
+ + GLTE V S EE ++ + G S S+ I +Q G
Sbjct: 168 NGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTI--KLVQAPG 225
Query: 238 ----------------KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL 281
+ SL+DLAG+ER + T + + + E IN SL+ L +CI L
Sbjct: 226 DSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGKCIEVL 284
Query: 282 ------GRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYA 333
G +P+R SKLT + ++ F G + + MI ++P S + +L+ ++++
Sbjct: 285 RENQLSGSTNKMVPYRDSKLTHLFQNYFDG-EGKARMIVNVNPCASDYDETLHVMKFS 341
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 105 bits (263), Expect = 2e-24
Identities = 89/285 (31%), Positives = 135/285 (47%), Gaps = 42/285 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F+ PLV+ G ++ FAYGQTGSGKT+TM G G ++ G VF+
Sbjct: 150 FQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFER 209
Query: 153 L------KSPKY--RGLNLHVSASFFEIYSGKVFDLLAEKAK-LRVLEDGKQQVQIVGLT 203
L + K+ R L SF EIY+ ++ DLL K L++ ED K V + LT
Sbjct: 210 LFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLT 269
Query: 204 EQVVDSVEEVLKLIQHG-----------NSASINNICFSFLQVH---------------G 237
E+ V ++++V +L+ G N+ S + V
Sbjct: 270 EEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTS 329
Query: 238 KFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR-----KGAHLPFRA 292
+ +L+DLAG+ER T +A + + E IN+SL L I L K H+P+R
Sbjct: 330 RINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEISQTGKQRHIPYRD 388
Query: 293 SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
S+LT +L++S +G ++ M+ ISP S + +TLR+A R K
Sbjct: 389 SRLTFLLQES-LGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAK 432
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 94.9 bits (236), Expect = 5e-23
Identities = 70/220 (31%), Positives = 95/220 (43%), Gaps = 47/220 (21%)
Query: 99 PLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
PL+++ +G FAYGQTGSGKT+TM G +G GI DV L+
Sbjct: 14 PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGA------GIIPRTVTDVIDLMDKGNA 67
Query: 159 RGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQ 218
+ + S VF + G + + E+
Sbjct: 68 NRTTAATAMNEHSSRSHSVFRI------------------HFGGKNALASATEQPK---- 105
Query: 219 HGNSASINNICFSFLQVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECI 278
GK +L+DLAG+ER D S A E A INKSL L I
Sbjct: 106 -----------------VGKINLVDLAGSER-IDFSGAEGSRLTETANINKSLSTLGNVI 147
Query: 279 RALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISP 318
AL + +H+P+R SKLT++L+DS G+ SRT M+A ISP
Sbjct: 148 SALAERDSHVPYRESKLTRLLQDSLGGN-SRTLMVACISP 186
>gnl|CDD|224386 COG1469, COG1469, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 35.8 bits (83), Expect = 0.026
Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 23/143 (16%)
Query: 237 GKFSL-IDLAGNERGADTSSANR--QTRMEGAEINKSLLALKECIRALGRKG-------- 285
F + +DL ++G S + +E L L+ R L R
Sbjct: 44 ATFDVFVDLPAEQKGIHMSRLVELLEEVLEEGPTELEFLCLEIAKRLLSRHMYASRAEVE 103
Query: 286 AHLPFRASKLTQV------------LRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYA 333
P+ K + V L D + + G ++C S R
Sbjct: 104 VRFPYFLRKTSPVSGKKSLEPYDVFLTAELERDDGEKKEVGVEVVGTTACPCSKEISRAR 163
Query: 334 DRVKELAATDPTEGPPPPTIIQR 356
E + +G P T QR
Sbjct: 164 LAEDEPYGEEILDGIPAATHNQR 186
>gnl|CDD|233404 TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase,
iron-sulfur subunit. This model represents the
Proteobacterial and mitochondrial type of the Rieske
[2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c
reductase. The model excludes the Rieske iron-sulfur
protein as found in the cytochrome b6-f complex of the
Cyanobacteria and chloroplasts. Most members of this
family have a recognizable twin-arginine translocation
(tat) signal sequence (DeltaPh-dependent translocation
in chloroplast) for transport across the membrane with
the 2Fe-2S group already bound. These signal sequences
include a motif resembling RRxFLK before the
transmembrane helix [Energy metabolism, Electron
transport].
Length = 174
Score = 30.8 bits (70), Expect = 0.65
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 15 VSSLHPEGRSVTVEWFEKGETKGKEV--------ELDALFSLNSNLMPKTNNENSQYNNC 66
VS + G+ +TVEW +GK V E+D L +L+ + N+E Q +
Sbjct: 46 VSKI-QPGQQLTVEW------RGKPVFIRRRTKKEIDELKALDLGALKDPNSEAQQPDYA 98
Query: 67 RSMP 70
R
Sbjct: 99 RVKR 102
>gnl|CDD|234000 TIGR02760, TraI_TIGR, conjugative transfer relaxase protein TraI.
This protein is a component of the relaxosome complex. In
the process of conjugative plasmid transfer the
realaxosome binds to the plasmid at the oriT (origin of
transfer) site. The relaxase protein TraI mediates the
single-strand nicking and ATP-dependent unwinding
(relaxation, helicase activity) of the plasmid molecule.
These two activities reside in separate domains of the
protein.
Length = 1960
Score = 31.8 bits (72), Expect = 0.81
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 182 AEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASINNI 228
E + L + GK+ V + T V E+L+ + HG +I+ I
Sbjct: 986 TETSILLHILPGKETVTPL-ATRAQVFLNLELLERLTHGQKQAIHLI 1031
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+).
Length = 372
Score = 29.8 bits (67), Expect = 2.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 201 GLTEQVVDSVEEVLKLIQHGNSASINNICFSFLQVHGK 238
GL QVV V E LK+I S + F + + HG+
Sbjct: 165 GLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
>gnl|CDD|233745 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein.
This model describes the permease protein, ModB, of the
molybdate ABC transporter. This system has been
characterized in E. coli , Staphylococcus carnosus
Rhodobacter capsulatus and Azotobacter vinlandii.
Molybdate is chemically similar to sulfate, thiosulfate,
and selenate. These related substrates, and sometimes
molybdate itself, can be transported by the homologous
sulfate receptor. Some apparent molybdenum transport
operons include a permease related to this ModB,
although less similar than some sulfate permease
proteins and not included in this model [Transport and
binding proteins, Anions].
Length = 208
Score = 28.8 bits (65), Expect = 4.5
Identities = 15/56 (26%), Positives = 17/56 (30%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKD 148
F PL G FA G T G+ G+TQ IY D
Sbjct: 125 FLKVTLPLAFPGLLAGCVLSFARALGEFGATLMFAGNIPGETQTIPLAIYDAVESD 180
>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 28.9 bits (65), Expect = 5.2
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 25/80 (31%)
Query: 100 LVKTIFEGGMAT-CFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPKY 158
+ G + YG TG+GKT T+ K V + L+
Sbjct: 32 FLAPALRGERPSNIIIYGPTGTGKTATV--------------------KFVMEELEESSA 71
Query: 159 RGLNLHVSA----SFFEIYS 174
++++ + +++ S
Sbjct: 72 NVEVVYINCLELRTPYQVLS 91
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 28.7 bits (64), Expect = 5.5
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 2 AQNSVWGRIHSAIVSSLHPEGRSVTVEWF-----------EKGETKGKEVELDALFS 47
A +W AIV +LH + + + F + + G++VE+++LFS
Sbjct: 217 ADGEIWRVRRRAIVPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFS 273
>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 699
Score = 28.6 bits (64), Expect = 7.3
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 147 KDVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGL 202
+V S K+ + ++ F++ Y+ K D K + LED + V IV L
Sbjct: 77 IEVTDYAYSIKFNFASYMSASKFYKDYALKTND------KKQYLEDYEDHVAIVAL 126
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 28.3 bits (64), Expect = 8.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 145 AAKDVFKLLKSPKYRGLNLHV----SASFF 170
A +LLKS Y G N+ + SA+FF
Sbjct: 192 DALTFKQLLKSKTYLG-NVLIFAACSAAFF 220
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 28.1 bits (64), Expect = 9.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 116 GQTGSGKTHTM 126
G TGSGKT TM
Sbjct: 39 GVTGSGKTFTM 49
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 28.3 bits (64), Expect = 9.4
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 90 PLDFRFSAKPLV 101
P+D+R S K L+
Sbjct: 530 PVDWRHSGKDLI 541
>gnl|CDD|235651 PRK05940, PRK05940, anthranilate synthase component I-like protein;
Validated.
Length = 463
Score = 28.2 bits (63), Expect = 9.5
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 4 NSVWGRIHSAIVSSLHPEGRSVTVEWFE 31
+++WG++ + IV+ PE EW E
Sbjct: 421 STIWGQVGAGIVADSDPEK-----EWLE 443
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,643,986
Number of extensions: 1728098
Number of successful extensions: 1840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1746
Number of HSP's successfully gapped: 50
Length of query: 386
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 287
Effective length of database: 6,546,556
Effective search space: 1878861572
Effective search space used: 1878861572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)