RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy23
(386 letters)
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 421 bits (1085), Expect = e-147
Identities = 180/264 (68%), Positives = 212/264 (80%), Gaps = 17/264 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFEGG ATCFAYGQTGSGKTHTMGGD GK+Q+ KGIYAMA++DVF L
Sbjct: 139 YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLL 198
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
P+YR LNL V +FFEIY+GKVFDLL +KAKLRVLED +QQVQ+VGL E +V ++
Sbjct: 199 KNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADD 258
Query: 213 VLKLIQHGNSA----------------SINNICF-SFLQVHGKFSLIDLAGNERGADTSS 255
V+K+I G++ + I + ++HGKFSL+DLAGNERGADTSS
Sbjct: 259 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSS 318
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTRMEGAEINKSLLALKECIRALG+ AH PFR SKLTQVLRDSFIG+ SRTCMIAM
Sbjct: 319 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 378
Query: 316 ISPGMSSCEHSLNTLRYADRVKEL 339
ISPG+SSCE++LNTLRYADRVKEL
Sbjct: 379 ISPGISSCEYTLNTLRYADRVKEL 402
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 418 bits (1078), Expect = e-146
Identities = 180/264 (68%), Positives = 211/264 (79%), Gaps = 17/264 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFEGG ATCFAYGQTGSGKTHTMGGD GK Q+ KGIYAMA++DVF L
Sbjct: 119 YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLL 178
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
P YR L L V +FFEIY+GK+FDLL +KAKLRVLEDGKQQVQ+VGL E +V+S ++
Sbjct: 179 KNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADD 238
Query: 213 VLKLIQHGNSA----------------SINNICF-SFLQVHGKFSLIDLAGNERGADTSS 255
V+K+I G++ + I + ++HGKFSL+DLAGNERGADTSS
Sbjct: 239 VIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSS 298
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTRMEGAEINKSLLALKECIRALG+ AH PFR SKLTQVLRDSFIG+ SRTCMIA
Sbjct: 299 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAT 358
Query: 316 ISPGMSSCEHSLNTLRYADRVKEL 339
ISPG+SSCE++LNTLRYADRVKEL
Sbjct: 359 ISPGISSCEYTLNTLRYADRVKEL 382
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 390 bits (1005), Expect = e-135
Identities = 118/296 (39%), Positives = 166/296 (56%), Gaps = 23/296 (7%)
Query: 93 FRFSAKPLVKTIFEGG-MATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFK 151
+ + KPL+ ++E G + +CFAYGQTGSGKT+TM G D GI+ AA D+F
Sbjct: 68 YENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP-GIFQYAAGDIFT 126
Query: 152 LLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
L + SF+EIY GK++DLL ++ + LE+GK++V + L V + E
Sbjct: 127 FLNIYDKD-NTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKE 185
Query: 212 EVLKLIQHGNSA-------------------SINNICFSFLQVHGKFSLIDLAGNERGAD 252
E++ + G +I+ + GK + IDLAG+ERGAD
Sbjct: 186 ELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGAD 245
Query: 253 TSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
T S N+QT+ +GA IN+SLLALKECIRA+ H+PFR S+LT+VLRD F+G KS++ M
Sbjct: 246 TVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVG-KSKSIM 304
Query: 313 IAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQRQSKRSSPSTSPQ 368
IA ISP +S CE +LNTLRY+ RVK + P P ++ S R+
Sbjct: 305 IANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTGHHHHHH 360
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 241 bits (618), Expect = 7e-77
Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 36/273 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ S +P+++ + EG A+ AYG TG+GKTHTM G + G+ A D+ +L
Sbjct: 83 YAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS------PEQPGVIPRALMDLLQL 136
Query: 153 LKSPKYRGLNL--HVSASFFEIYSGKVFDLLA-EKAKLRVLEDGKQQVQIVGLTEQVVDS 209
+ G V+ S+ EIY KV DLL L + ED + + I GL+++ + S
Sbjct: 137 TREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISS 196
Query: 210 VEEVLKLIQHGNSA----------------SINNICF-------SFLQVHGKFSLIDLAG 246
+ + + ++ + F Q GK LIDLAG
Sbjct: 197 FADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAG 256
Query: 247 NERGADTSSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIG 305
+E T N+ R+ E IN SL L + + AL + +P+R SKLT++L+DS +G
Sbjct: 257 SEDNRRTG--NKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDS-LG 313
Query: 306 DKSRTCMIAMISPGMSSCEHSLNTLRYADRVKE 338
+ + +IA I+P +++ L +A R KE
Sbjct: 314 GSAHSILIANIAPERRFYLDTVSALNFAARSKE 346
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 238 bits (610), Expect = 3e-76
Identities = 96/282 (34%), Positives = 144/282 (51%), Gaps = 42/282 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
++ +PL++ FEG AT FAYGQTGSGKT+TMG + ++GI A + FKL
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA---EKAKLRVLEDGKQQVQIVGLTEQVVDS 209
+ L+ V S+ E+Y + DLL +++ ED + V + G+ E V+
Sbjct: 128 IDEND--LLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEG 185
Query: 210 VEEVLKLIQHGN------------------------------SASINNICFSFLQVHGKF 239
++EVL L++ GN + S + KF
Sbjct: 186 LDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKF 245
Query: 240 SLIDLAGNERGADTSSANRQTRM-EGAEINKSLLALKECIRALG---RKGAHLPFRASKL 295
+DLAG+ER T + R+ E +IN SLLAL I ALG R+G+H+P+R SK+
Sbjct: 246 HFVDLAGSERVLKTG--STGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKI 303
Query: 296 TQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
T++L+DS +G ++T MIA +SP S + +LNTL YA R +
Sbjct: 304 TRILKDS-LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 237 bits (606), Expect = 1e-75
Identities = 93/277 (33%), Positives = 137/277 (49%), Gaps = 43/277 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F + KP++++ G T AYG TG+GKTHTM G + G+ + ++K
Sbjct: 90 FEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS------ADEPGVMYLTMLHLYKC 143
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
+ K + S+ E+Y+ ++ DLL L V ED ++ V + GLT S EE
Sbjct: 144 MDEIK-EEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEE 202
Query: 213 VLKLIQHGNSA----------------SINNICFSFLQVH-----------GKFSLIDLA 245
+L L+ +GN ++ I Q K SLIDLA
Sbjct: 203 ILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLR--QQDKTASINQNVRIAKMSLIDLA 260
Query: 246 GNERGADTSSANRQTRM-EGAEINKSLLALKECIRALG---RKGAHLPFRASKLTQVLRD 301
G+ER + + + TR EG IN+SLLAL I AL RK H+P+R SKLT++L+D
Sbjct: 261 GSERASTSG--AKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKD 318
Query: 302 SFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKE 338
S +G +T MIA +SP + + NTL+YA+R K+
Sbjct: 319 S-LGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKD 354
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 234 bits (598), Expect = 2e-74
Identities = 93/269 (34%), Positives = 139/269 (51%), Gaps = 33/269 (12%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F+ S KPL+ + EG +T FAYGQTG+GKT TMGG+ + G + K +F
Sbjct: 74 FQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGN------KEEPGAIPNSFKHLFDA 127
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
+ S N V S+ E+Y+ ++ DL+ KL + ED + + + GL+ V + E
Sbjct: 128 INSSS-SNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAE 186
Query: 213 VLKLIQHGNSA----------------SINNICFSFLQVH--------GKFSLIDLAGNE 248
+ L+ G + SI + +V GK +L+DLAG+E
Sbjct: 187 LSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSE 246
Query: 249 RGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKS 308
R + T + EGA+IN SL AL I L H+P+R SKLT++L+DS +G S
Sbjct: 247 RQSKTGATGETLV-EGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDS-LGGNS 304
Query: 309 RTCMIAMISPGMSSCEHSLNTLRYADRVK 337
+T M A ISP ++ + +++TLRYADR K
Sbjct: 305 KTLMCANISPASTNYDETMSTLRYADRAK 333
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 230 bits (590), Expect = 2e-73
Identities = 92/268 (34%), Positives = 128/268 (47%), Gaps = 29/268 (10%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ AK +VK + EG T FAYGQT SGKTHTM G GI +D+F
Sbjct: 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK---LHDPEGMGIIPRIVQDIFNY 118
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA-EKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ S L H+ S+FEIY K+ DLL K L V ED + + G TE+ V S +
Sbjct: 119 IYSMD-ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPD 177
Query: 212 EVLKLIQHGNSA----------------SINNICF------SFLQVHGKFSLIDLAGNER 249
EV+ I G S SI I + ++ GK L+DLAG+E+
Sbjct: 178 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 237
Query: 250 GADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSR 309
+ T + E INKSL AL I AL ++P+R SK+T++L+DS +G R
Sbjct: 238 VSKTGAEGAVLD-EAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS-LGGNCR 295
Query: 310 TCMIAMISPGMSSCEHSLNTLRYADRVK 337
T ++ SP + + +TL + R K
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAK 323
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 230 bits (589), Expect = 5e-73
Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 24/262 (9%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVF-K 151
++ PLV + EG T AYGQTG+GK+++MG G+ GI A D+F +
Sbjct: 79 YQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFER 138
Query: 152 LLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ + + V ASF EIY+ K FDLL + T + S
Sbjct: 139 VTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP-----HMPMVAARCQRCTCLPLHSQA 193
Query: 212 EVLKLIQHGNSA----------------SINNICFSFLQVHGKFSLIDLAGNERGADTSS 255
++ +++ G +I I H + +++DLAG+E +
Sbjct: 194 DLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEG-VRRTG 252
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
R EG IN LL++ + + ++ +P+R S LT VL+ S + +S +A
Sbjct: 253 HEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQAS-LTAQSYLTFLAC 311
Query: 316 ISPGMSSCEHSLNTLRYADRVK 337
ISP +L+TLR+ K
Sbjct: 312 ISPHQCDLSETLSTLRFGTSAK 333
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 230 bits (588), Expect = 1e-72
Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 38/279 (13%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+ PL++ + G T FAYGQTG+GKTHTM G+ + + D GI A
Sbjct: 85 YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALS 144
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLA----EKAKLRVLEDGKQQVQIVGLT 203
+F L+ + + + S+ E+Y+ ++ DLL+ K ++ K V I GL
Sbjct: 145 HLFDELRMME---VEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLE 201
Query: 204 EQVVDSVEEVLKLIQHGNSA----------------SINNICFSFLQV---------HGK 238
E V S ++V KL++ G ++ +I + GK
Sbjct: 202 EIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGK 261
Query: 239 FSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQV 298
+L+DLAG+E + + E IN+SLL L I AL + H+P+R SKLT++
Sbjct: 262 LNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRL 321
Query: 299 LRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
L++S +G +++T +IA ISPG E +L+TL YA R K
Sbjct: 322 LQES-LGGRTKTSIIATISPGHKDIEETLSTLEYAHRAK 359
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 226 bits (578), Expect = 3e-71
Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 30/269 (11%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ +AK +V + G T FAYGQT SGKTHTM G + +GI D+F
Sbjct: 69 YNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVK---QGIIPRIVNDIFNH 125
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA-EKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ + + L H+ S++EIY K+ DLL K L V ED + + G TE+ V S E
Sbjct: 126 IYAME-VNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPE 184
Query: 212 EVLKLIQHGNSA----------------SINNICF------SFLQVHGKFSLIDLAGNER 249
+V ++I+ G S S+ I + ++ GK L+DLAG+E+
Sbjct: 185 DVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEK 244
Query: 250 GADTSSANRQTRMEGAEINKSLLALKECIRALG-RKGAHLPFRASKLTQVLRDSFIGDKS 308
+ T + E INKSL AL I AL H+P+R SKLT++L++S +G +
Sbjct: 245 VSKTGAEGTVLD-EAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQES-LGGNA 302
Query: 309 RTCMIAMISPGMSSCEHSLNTLRYADRVK 337
RT ++ SP + + +TL + R K
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAK 331
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 225 bits (575), Expect = 7e-71
Identities = 90/281 (32%), Positives = 140/281 (49%), Gaps = 41/281 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQ-----DCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM G+ + D GI
Sbjct: 73 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLH 132
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLLA----EKAKLRVLED--GKQQVQIVG 201
+F+ L G V S EIY+ ++FDLL +L++ +D K+ V I G
Sbjct: 133 QIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 189
Query: 202 LTEQVVDSVEEVLKLIQHGNSA----------------SINNICFSFLQVH--------- 236
L E V + +EV ++++ G + S+ ++ +
Sbjct: 190 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKI 249
Query: 237 GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLT 296
GK +L+DLAG+E + + +++ R E IN+SLL L I AL + H+P+R SKLT
Sbjct: 250 GKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKLT 308
Query: 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
++L+DS +G ++RT +IA ISP + E +L+TL YA R K
Sbjct: 309 RILQDS-LGGRTRTSIIATISPASLNLEETLSTLEYAHRAK 348
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 223 bits (571), Expect = 3e-70
Identities = 93/269 (34%), Positives = 137/269 (50%), Gaps = 29/269 (10%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F FS KP V I G T FAYGQTG+GK++TM G +G+ + +F
Sbjct: 65 FDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGT--SIDDPDGRGVIPRIVEQIFTS 122
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA-EKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ S + V S+ EIY ++ DLLA + L V E+ + V + GL E V SV+
Sbjct: 123 ILSSA-ANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQ 181
Query: 212 EVLKLIQHGNSA----------------SINNICFSFLQV------HGKFSLIDLAGNER 249
EV ++++ G +A SI I + V G+ L+DLAG+E+
Sbjct: 182 EVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEK 241
Query: 250 GADTSSANRQTRMEGAEINKSLLALKECIRALG-RKGAHLPFRASKLTQVLRDSFIGDKS 308
T ++ + E +INKSL AL I AL K +H+P+R SKLT++L++S +G S
Sbjct: 242 VGKTGASGQTLE-EAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQES-LGGNS 299
Query: 309 RTCMIAMISPGMSSCEHSLNTLRYADRVK 337
RT +I SP + +L+TLR+ R K
Sbjct: 300 RTTLIINCSPSSYNDAETLSTLRFGMRAK 328
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 222 bits (569), Expect = 1e-69
Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 35/273 (12%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ + +PLV ++ +G T FAYGQTG+GKT+TM G + K+G+ + +F
Sbjct: 86 YDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGI---RGDPEKRGVIPNSFDHIFTH 142
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA--EKAKLRVLEDGKQQVQIVGLTEQVVDSV 210
+ + V AS+ EIY ++ DLL+ + +L + E V + L+ V SV
Sbjct: 143 ISRSQ--NQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSV 200
Query: 211 EEVLKLIQHGNSA----------------SINNICFSFLQVH---------GKFSLIDLA 245
+E+ ++ GN +I I +V GK +L+DLA
Sbjct: 201 KEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLA 260
Query: 246 GNERGADTSSANRQTRMEGAEINKSLLALKECIRALG-RKGAHLPFRASKLTQVLRDSFI 304
G+ER + A + E +IN SL AL I AL K H+P+R SKLT++L+DS +
Sbjct: 261 GSER-QAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS-L 318
Query: 305 GDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
G ++T M+A + P + E +L TLRYA+R K
Sbjct: 319 GGNAKTVMVANVGPASYNVEETLTTLRYANRAK 351
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 220 bits (564), Expect = 4e-69
Identities = 82/268 (30%), Positives = 126/268 (47%), Gaps = 35/268 (13%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
K LV++ +G FAYGQTGSGKT T+ G D G+ A ++F+++K
Sbjct: 67 DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGA------DSNPGLTPRAMSELFRIMKK 120
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLA----EKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ + A E+Y + DLL ++ KL + +D K V + +T + + E
Sbjct: 121 DS-NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYE 179
Query: 212 EVLKLIQHGNSA----------------SINNICF------SFLQVHGKFSLIDLAGNER 249
E+ +IQ G+ I ++ + GK S +DLAG+ER
Sbjct: 180 ELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSER 239
Query: 250 GADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSR 309
S + E INKSL AL + I AL H+P+R KLT ++ DS G+ ++
Sbjct: 240 -VKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGN-AK 297
Query: 310 TCMIAMISPGMSSCEHSLNTLRYADRVK 337
T M ISP S+ + + N+L YA RV+
Sbjct: 298 TLMFVNISPAESNLDETHNSLTYASRVR 325
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 219 bits (560), Expect = 1e-68
Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 43/280 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F+ + +++ F+G A FAYGQTGSGK++TM G + G+ +F+
Sbjct: 77 FKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT------ADQPGLIPRLCSGLFER 130
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA---EKAKLRVLEDGKQQVQIVGLTEQVVDS 209
+ + + V S+ EIY+ KV DLL + L+V E + GL++ V S
Sbjct: 131 TQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTS 190
Query: 210 VEEVLKLIQHGNSA----------------SINNICFSFLQVH----------GKFSLID 243
+++ L+ GN + ++ I + GK SL+D
Sbjct: 191 YKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVD 250
Query: 244 LAGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL------GRKGAHLPFRASKLTQ 297
LAG+ER A + A EG+ INKSL L I AL K +P+R S LT
Sbjct: 251 LAGSER-ATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTW 309
Query: 298 VLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
+L+DS +G S+T M+A +SP + + +L+TLRYADR K
Sbjct: 310 LLKDS-LGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 217 bits (556), Expect = 4e-68
Identities = 81/278 (29%), Positives = 129/278 (46%), Gaps = 44/278 (15%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ A P++ + +G T FAYGQT SGKT+TM G + G+ A D+F+
Sbjct: 62 YEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGS------EDHLGVIPRAIHDIFQK 115
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA---EKAKLRVLEDGKQQVQIVGLTEQVVDS 209
+K + S+ EIY+ + DLL + L + ED + V + LTE+VV +
Sbjct: 116 IKKFP--DREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYT 173
Query: 210 VEEVLKLIQHGNSA----------------SINNICFSFLQVH-----------GKFSLI 242
E LK I G + +I + + +L+
Sbjct: 174 SEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233
Query: 243 DLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL--GRKGAHLPFRASKLTQVLR 300
DLAG+ER A + A EG IN+SL L + I+ L G+ G + +R SKLT++L+
Sbjct: 234 DLAGSER-AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQ 292
Query: 301 DSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKE 338
+S +G ++T +I I+P S + +L L++A K
Sbjct: 293 NS-LGGNAKTRIICTITP--VSFDETLTALQFASTAKY 327
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 217 bits (556), Expect = 5e-68
Identities = 81/277 (29%), Positives = 127/277 (45%), Gaps = 40/277 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ AK +V +G T YGQTG+GKT+TM G + +GI A + VF++
Sbjct: 88 YETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH---RGILPRALQQVFRM 144
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLA-------EKAKLRVLEDGKQQVQIVGLTEQ 205
++ + V S+ EIY+ +FDLL+ + ++E+ Q V I GL+
Sbjct: 145 IEERP--THAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVEN-PQGVFIKGLSVH 201
Query: 206 VVDSVEEVLKLIQHGNSA----------------SINNICF--------SFLQVHGKFSL 241
+ E+ L+ G + I I + K +L
Sbjct: 202 LTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINL 261
Query: 242 IDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG-RKGAHLPFRASKLTQVLR 300
+DLAG+ER + + Q E INKSL L++ I ALG +K H+PFR KLT L+
Sbjct: 262 VDLAGSERLGKSG-SEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALK 320
Query: 301 DSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
DS +G ++ I + E +L++LR+A R+K
Sbjct: 321 DS-LGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 356
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 217 bits (554), Expect = 5e-68
Identities = 91/268 (33%), Positives = 138/268 (51%), Gaps = 35/268 (13%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
+ LV + +G FAYGQTG+GKT+TM G GI A + +F ++
Sbjct: 68 EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGT------AENPGINQRALQLLFSEVQE 121
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLA----EKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
K ++ S EIY+ + DLL EK ++R+ DG Q+ + GLTE V SV+
Sbjct: 122 -KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVD 180
Query: 212 EVLKLIQHGN----------------SASINNI------CFSFLQVHGKFSLIDLAGNER 249
++ K+ + G+ S ++ + C + L+ GK +L+DLAG+ER
Sbjct: 181 DINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSER 240
Query: 250 GADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSR 309
S A E INKSL AL + I AL + H+PFR SKLT +L+DS GD S+
Sbjct: 241 -VGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGD-SK 298
Query: 310 TCMIAMISPGMSSCEHSLNTLRYADRVK 337
T M+ +SP + +L +L++A+RV+
Sbjct: 299 TLMVVQVSPVEKNTSETLYSLKFAERVR 326
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 217 bits (554), Expect = 1e-67
Identities = 93/285 (32%), Positives = 139/285 (48%), Gaps = 46/285 (16%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+R + +++ FEG FAYGQTG+GK++TM GK + ++GI +D+F
Sbjct: 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM----MGKQEKDQQGIIPQLCEDLFSR 129
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAE--KAKLRVLEDGKQQVQIVGLTEQVVDSV 210
+ ++ V S+ EIY +V DLL K LRV E + L++ V S
Sbjct: 130 INDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSY 189
Query: 211 EEVLKLIQHGNSA----------------SINNICFSFLQVH----------GKFSLIDL 244
++ L+ GN ++ NI F+ + K SL+DL
Sbjct: 190 NDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 245 AGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG------------RKGAHLPFRA 292
AG+ER AD++ A EGA INKSL L + I AL +K +P+R
Sbjct: 250 AGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 293 SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
S LT +LR++ +G SRT M+A +SP + + +L+TLRYADR K
Sbjct: 309 SVLTWLLREN-LGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 216 bits (552), Expect = 1e-66
Identities = 75/268 (27%), Positives = 121/268 (45%), Gaps = 39/268 (14%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
PL+++ +G FAYGQTGSGKT+TM G G+ +F ++
Sbjct: 126 MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV------PESVGVIPRTVDLLFDSIRG 179
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLA---EKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
+ G + A+F EIY+ ++DLL+ + ++R+ ++ K + + +TE+ V
Sbjct: 180 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNH 239
Query: 213 VLKLIQHGN----------------SASINNI------CFSFLQVHGKFSLIDLAGNERG 250
+ L+ S ++ + G +L+DLAG+E
Sbjct: 240 LRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESP 299
Query: 251 ADTSSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSR 309
TRM E IN+SL L I AL +K H+P+R SKLT +L S G+ S+
Sbjct: 300 K------TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN-SK 352
Query: 310 TCMIAMISPGMSSCEHSLNTLRYADRVK 337
T M +SP + S+ +LR+A V
Sbjct: 353 TLMFINVSPFQDCFQESVKSLRFAASVN 380
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 213 bits (545), Expect = 3e-66
Identities = 82/273 (30%), Positives = 121/273 (44%), Gaps = 36/273 (13%)
Query: 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
LV++ +G FAYGQTGSGKT TM G G Q +G+ A + +F + +
Sbjct: 105 AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL--EGLIPRALRHLFSVAQELS 162
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLAE--------KAKLRVLEDGKQQVQIVGLTEQVVDS 209
+G AS+ EIY+ V DLLA + ++R G +++ + V
Sbjct: 163 GQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSC 222
Query: 210 VEEVLKLIQHGNSA----------------SINNI------CFSFLQVHGKFSLIDLAGN 247
+EV L+ S+ + LQ SL+DLAG+
Sbjct: 223 EKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGS 282
Query: 248 ERGADT--SSANRQTRM-EGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFI 304
ER + R+ E IN SL L I AL K +H+P+R SKLT +L++S
Sbjct: 283 ERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLG 342
Query: 305 GDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
G ++ M ISP + SLN+LR+A +V
Sbjct: 343 GS-AKMLMFVNISPLEENVSESLNSLRFASKVN 374
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 211 bits (540), Expect = 9e-65
Identities = 89/301 (29%), Positives = 138/301 (45%), Gaps = 66/301 (21%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ + + FEG FAYGQTGSGK++TM G + G+ +D+F+
Sbjct: 121 YDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT------PDQPGLIPRTCEDLFQR 174
Query: 153 LKSPKYRGLNL--HVSASFFEIYSGKVFDLLA------EKAKLRVLEDGKQQVQIVGLTE 204
+ S + N+ +V S+FE+Y+ V DLLA L+V E + + LTE
Sbjct: 175 IASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTE 234
Query: 205 QVVDSVEEVLKLIQHGNSA----------------SINNICF----------SFLQVHGK 238
V +EE+++ ++ G+ + ++ I + +
Sbjct: 235 VPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSR 294
Query: 239 FSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL----------------- 281
L+DLAG+ER A ++ A Q EG+ INKSL L I AL
Sbjct: 295 IRLVDLAGSER-AKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353
Query: 282 -----GRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
G + +P+R S LT +L+DS +G S+T MIA ISP + + +L+TLRYAD+
Sbjct: 354 RGRTPGPANSVVPYRDSVLTWLLKDS-LGGNSKTAMIACISP--TDYDETLSTLRYADQA 410
Query: 337 K 337
K
Sbjct: 411 K 411
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 203 bits (520), Expect = 9e-63
Identities = 83/277 (29%), Positives = 119/277 (42%), Gaps = 46/277 (16%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSP 156
LV++ +G FAYGQTGSGKT TM GI +F +
Sbjct: 73 VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--------GDGIIPSTISHIFNWINKL 124
Query: 157 KYRGLNLHVSASFFEIYSGKVFDLLAEK----------AKLRVLEDGK-QQVQIVGLTEQ 205
K +G + V+ F EIY+ + DLL K + D + + I +T
Sbjct: 125 KTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSC 184
Query: 206 VVDSVEEVLKLIQHGNSA-------------------SINNICFSFL---QVHGKFSLID 243
++S E V +++ N I+ + +G +L+D
Sbjct: 185 KLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVD 244
Query: 244 LAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR---KGAHLPFRASKLTQVLR 300
LAG+ER + S E INKSL L + I ALG+ H+PFR SKLT +L+
Sbjct: 245 LAGSER-INVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 303
Query: 301 DSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
S GD S+T M ISP S +LN+LR+A +V
Sbjct: 304 YSLTGD-SKTLMFVNISPSSSHINETLNSLRFASKVN 339
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 203 bits (518), Expect = 8e-62
Identities = 88/278 (31%), Positives = 123/278 (44%), Gaps = 46/278 (16%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
LV++ +G FAYGQTGSGKT TM GI +F +
Sbjct: 128 EVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--------GDGIIPSTISHIFNWINK 179
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLAEK----------AKLRVLEDGK-QQVQIVGLTE 204
K +G + V+A F EIY+ + DLL K + D + + I +T
Sbjct: 180 LKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 239
Query: 205 QVVDSVEEVLKLIQHGN----------------SASINNI------CFSFLQVHGKFSLI 242
++S E V +++ N S SI I + +G +L+
Sbjct: 240 VKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLV 299
Query: 243 DLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGR---KGAHLPFRASKLTQVL 299
DLAG+ER + S E INKSL AL + I ALG+ H+PFR SKLT +L
Sbjct: 300 DLAGSER-INVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLL 358
Query: 300 RDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
+ S GD S+T M ISP S +LN+LR+A +V
Sbjct: 359 QYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASKVN 395
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 198 bits (507), Expect = 9e-61
Identities = 80/278 (28%), Positives = 125/278 (44%), Gaps = 48/278 (17%)
Query: 98 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKSPK 157
+ LV++ +G FAYGQTGSGKT+TM G+ M +FK + K
Sbjct: 75 RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--------GDGMIPMTLSHIFKWTANLK 126
Query: 158 YRGLNLHVSASFFEIYSGKVFDLLA------------EKAKLRVLEDGKQ-QVQIVGLTE 204
RG N + + EIY+ + DLL + K + D ++ I +T
Sbjct: 127 ERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTR 186
Query: 205 QVVDSVEEVLKLIQHGNSA----------------SINNICF------SFLQVHGKFSLI 242
+ S +V +++ + S+ + + GK +L+
Sbjct: 187 MKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLV 246
Query: 243 DLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGA---HLPFRASKLTQVL 299
DLAG+ER ++S+ + E INKSL L + I AL A ++PFR SKLT +L
Sbjct: 247 DLAGSER-INSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLL 305
Query: 300 RDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
+ S +GD S+T M I P + +LN+LR+A +V
Sbjct: 306 QYSLVGD-SKTLMFVNIPPDPNHISETLNSLRFASKVN 342
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 91.2 bits (227), Expect = 6e-23
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 267 INKSLLALKECIRALG-RKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEH 325
INKSL AL I AL H+P+R SK+T++L+DS + RT ++ SP + +
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDS-LDGNCRTTIVICCSPSVFNEAE 62
Query: 326 SLNTLRYADRVK 337
+ +TL + R K
Sbjct: 63 TKSTLMFGQRAK 74
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 88.9 bits (221), Expect = 7e-22
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 268 NKSLLALKECIRALG-RKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHS 326
NKSL AL I AL H+P+R SK+T++L+DS +G RT ++ SP + + +
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDS-LGGNCRTTIVICCSPSVFNEAET 59
Query: 327 LNTLRYADRVK 337
+TL + R K
Sbjct: 60 KSTLMFGQRAK 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 6e-09
Identities = 71/458 (15%), Positives = 135/458 (29%), Gaps = 105/458 (22%)
Query: 14 IVSSLHPEGRSVTVEW-FEKGETKGKEVELDALFSLNSN-LMPKTNNENSQ-------YN 64
I+ S ++ + W + + + ++ + +N LM E Q Y
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 65 NCRSMPLSGNKL------SRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQT 118
R + N++ SR L L+ + +P K + G+
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELRP-AKNVLIDGVL-------- 159
Query: 119 GSGKTHTMGGD-FQGKTQDCKK--GIYAM------AAKDVFKLLKS------PKYRGLNL 163
GSGKT + D CK I+ + + + V ++L+ P + +
Sbjct: 160 GSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 164 HVSASFFEIYSGKVF--DLLAEKAK---LRVLED--GKQ-------QVQIVGLT--EQVV 207
H S I+S + LL K L VL + + +I+ T +QV
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 208 D----------SVEEVLKLIQHGNS----ASINNICFSFL--QVHGKFSL-IDLAGNERG 250
D S++ + + L +V + + E
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESI 337
Query: 251 ADTSSANRQTRMEGAE-----INKSLLAL-----KECIRALG--RKGAHLPFRASKLTQV 298
D + + + I SL L ++ L AH+P + L +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSL 394
Query: 299 LRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQR-- 356
+ I + + + + +T+ EL E +I+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 357 -QSKRSSPSTSPQRNDS--------HLNDSDLAQLRSL 385
S P D HL + + + +L
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 9e-05
Identities = 78/462 (16%), Positives = 143/462 (30%), Gaps = 151/462 (32%)
Query: 8 GRI-HSAIVS-SLHPEGRSVTVEWFEK-------GETKGKE----VELDALFS--LNSNL 52
G + H +V + S E F K G E EL F ++S +
Sbjct: 14 GSLEHVLLVPTASFFIA-SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 53 MPKTNNENSQYNNC--------RSMPLSGNKL-SRCWKVLSLKNTVPLDFRFSAKPLVKT 103
P ++ Q++ + L GN + + L K L+K
Sbjct: 73 EP---SKVGQFDQVLNLCLTEFENCYLEGNDIHAL---AAKLLQENDTTLV-KTKELIKN 125
Query: 104 IFEGGMATC-----------FAYGQTGSGKTHTM-GGDFQGKTQDCKKGIYAMAAKDVFK 151
+ F G+ + + GG QG T D F+
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--QGNTDDY------------FE 171
Query: 152 LLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
L R L ++ Y V DL+ A+ + E + + + Q ++
Sbjct: 172 EL-----RDL--------YQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLN--- 214
Query: 212 EVLKLIQHGNSA-----------SINNIC-------FSFLQVHGKFSLIDLAGNERGADT 253
+L+ +++ ++ S I ++ G F+ +L +GA
Sbjct: 215 -ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATG 272
Query: 254 SSANRQT--RMEGAEINKSLL-ALKECIRAL---G-RKGAHLPFRASKLT-QVLRDSF-I 304
S T + + +S ++++ I L G R + + + L +L DS
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYPNTSLPPSILEDSLEN 330
Query: 305 GDKSRTCMIAMISPGMSSCEHSLNTLRYADRV-KELAATDPTE-------------GPP- 349
+ + M++ IS ++ + Y ++ L A E GPP
Sbjct: 331 NEGVPSPMLS-IS-NLTQEQ----VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 350 --------------PPTIIQRQ---SKR----SS---PSTSP 367
P + Q + S+R S+ P SP
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Score = 33.9 bits (77), Expect = 0.10
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 26/101 (25%)
Query: 12 SAIVSSLHPEGRSVTVEWFEKGETKGKEVELDALFSLNSNLMPKTNNENSQYNNCRSMPL 71
+ +S E VE G+ G VE+ N N EN QY
Sbjct: 1815 GRVAASFSQEALQYVVE--RVGKRTGWLVEI-V------NY----NVENQQY------VA 1855
Query: 72 SG-----NKLSRCWKVLSLKN--TVPLDFRFSAKPLVKTIF 105
+G + ++ + L+ + L S + + +F
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 32.7 bits (74), Expect = 0.22
Identities = 51/293 (17%), Positives = 84/293 (28%), Gaps = 121/293 (41%)
Query: 99 PLVKTIFEGG----------MATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKD 148
P+ TI GG A F G KT +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT-----------------------EK 1705
Query: 149 VFKLLKSPKYRGLNLHVSASFFEIYSGKVFD--------LLAEKAKLRVLED-GKQQVQI 199
+FK +N H ++ F G + L EKA L+ G
Sbjct: 1706 IFK--------EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 200 V--G--LTE--------QVVDSVEEVLKLIQHGNSASINNICFSFLQVH--GKFSLIDLA 245
G L E V+ S+E ++++ V G + +
Sbjct: 1758 TFAGHSLGEYAALASLADVM-SIESLVEV------------------VFYRGMTMQVAVP 1798
Query: 246 GNERGADTSS--ANRQTRMEGAEINKSLLALKECIRALGRKGAHL--------P------ 289
+E G A R+ A ++ AL+ + +G++ L
Sbjct: 1799 RDELGRSNYGMIAINPGRV-AASFSQE--ALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 290 ---FRA-SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKE 338
RA +T VL +FI + I +I + SL+ + V+
Sbjct: 1856 AGDLRALDTVTNVL--NFIKLQK----IDII-----ELQKSLSL----EEVEG 1893
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 28.7 bits (65), Expect = 2.5
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 113 FAYGQTGSGKTHTM 126
+ +G SG+TH +
Sbjct: 56 YLWGPVKSGRTHLI 69
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 27.6 bits (62), Expect = 3.7
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 113 FAYGQTGSGKTHTM 126
+ +G+ G+GK+H +
Sbjct: 40 YVWGEEGAGKSHLL 53
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 27.9 bits (62), Expect = 5.9
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 97 AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG 128
V+ + YG G GK++ +
Sbjct: 140 ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 27.9 bits (63), Expect = 6.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 116 GQTGSGKTHTM 126
G TG+GKT TM
Sbjct: 35 GATGTGKTVTM 45
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 27.9 bits (63), Expect = 7.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 116 GQTGSGKTHTM 126
G TG+GKT T+
Sbjct: 39 GATGTGKTFTV 49
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.2 bits (59), Expect = 8.1
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 83 LSLKNTVPLDFRFSAKPLVKTIFEGGMAT-----CFAYGQTGSGKTHTMGGDFQGKTQDC 137
+ +++ +F+ + ++++ G ++ GQ+G+GKT T+ Q + Q
Sbjct: 1 MEIQDYTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKT-TIHRIKQKEFQGN 59
Query: 138 KKGIYAMAAKDVFKLLKSPKYRGLNL---HVSASFFEIYSGKVFDLLAEKA 185
I D F+ P Y L S + + ++GK+ + L K
Sbjct: 60 IVIIDG----DSFRSQH-PHYLELQQEYGKDSVEYTKDFAGKMVESLVTKL 105
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A
{Vaccinia virus} PDB: 3nvn_A*
Length = 383
Score = 27.4 bits (60), Expect = 9.3
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 43 DALFSLNSNLMPKTNNENSQYNNCRS-MPLSGNKLSRC 79
A+++ ++N + KT N+ Y + + C
Sbjct: 29 GAVYTFSNNKLNKTGLTNNNYITTSIKVEDADKDTLVC 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,507,678
Number of extensions: 316423
Number of successful extensions: 884
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 64
Length of query: 386
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 291
Effective length of database: 4,049,298
Effective search space: 1178345718
Effective search space used: 1178345718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)