RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy23
(386 letters)
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 207 bits (528), Expect = 2e-64
Identities = 181/265 (68%), Positives = 212/265 (80%), Gaps = 17/265 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFEGG ATCFAYGQTGSGKTHTMGGD GK+Q+ KGIYAMA++DVF L
Sbjct: 98 YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLL 157
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
P+YR LNL V +FFEIY+GKVFDLL +KAKLRVLED +QQVQ+VGL E +V ++
Sbjct: 158 KNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADD 217
Query: 213 VLKLIQHGN-----------SASINNICFSFLQV------HGKFSLIDLAGNERGADTSS 255
V+K+I G+ S S + + + HGKFSL+DLAGNERGADTSS
Sbjct: 218 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSS 277
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTRMEGAEINKSLLALKECIRALG+ AH PFR SKLTQVLRDSFIG+ SRTCMIAM
Sbjct: 278 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 337
Query: 316 ISPGMSSCEHSLNTLRYADRVKELA 340
ISPG+SSCE++LNTLRYADRVKEL+
Sbjct: 338 ISPGISSCEYTLNTLRYADRVKELS 362
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 166 bits (420), Expect = 7e-49
Identities = 115/265 (43%), Positives = 160/265 (60%), Gaps = 23/265 (8%)
Query: 93 FRFSAKPLVKTIFEGG-MATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFK 151
+ + KPL+ ++E G + +CFAYGQTGSGKT+TM G Q Q GI+ AA D+F
Sbjct: 68 YENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGS-QPYGQSDTPGIFQYAAGDIFT 126
Query: 152 LLKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
L + + SF+EIY GK++DLL ++ + LE+GK++V + L V + E
Sbjct: 127 FLNI-YDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKE 185
Query: 212 EVLKLIQHG-----------NSASINNICFSFLQVH--------GKFSLIDLAGNERGAD 252
E++ + G N S + + + GK + IDLAG+ERGAD
Sbjct: 186 ELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGAD 245
Query: 253 TSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCM 312
T S N+QT+ +GA IN+SLLALKECIRA+ H+PFR S+LT+VLRD F+G S++ M
Sbjct: 246 TVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGK-SKSIM 304
Query: 313 IAMISPGMSSCEHSLNTLRYADRVK 337
IA ISP +S CE +LNTLRY+ RVK
Sbjct: 305 IANISPTISCCEQTLNTLRYSSRVK 329
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 162 bits (411), Expect = 1e-47
Identities = 88/269 (32%), Positives = 120/269 (44%), Gaps = 29/269 (10%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+ AK +VK + EG T FAYGQT SGKTHTM G GI +D+F
Sbjct: 60 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM---GIIPRIVQDIFNY 116
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLL-AEKAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ S L H+ S+FEIY K+ DLL K L V ED + + G TE+ V S +
Sbjct: 117 IYSMDEN-LEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPD 175
Query: 212 EVLKLIQHGN-----------SASINNICFSFLQVH-----------GKFSLIDLAGNER 249
EV+ I G S + + V GK L+DLA
Sbjct: 176 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLA-GSE 234
Query: 250 GADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSR 309
+ A E INKSL AL I AL ++P+R SK+T++L+DS G+ R
Sbjct: 235 KVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGN-CR 293
Query: 310 TCMIAMISPGMSSCEHSLNTLRYADRVKE 338
T ++ SP + + +TL + R K
Sbjct: 294 TTIVICCSPSSYNESETKSTLLFGQRAKT 322
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 157 bits (396), Expect = 3e-45
Identities = 88/283 (31%), Positives = 136/283 (48%), Gaps = 41/283 (14%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTM-----GGDFQGKTQDCKKGIYAMAAK 147
+R P++ + G T FAYGQTG+GKT TM + +D GI
Sbjct: 65 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLH 124
Query: 148 DVFKLLKSPKYRGLNLHVSASFFEIYSGKVFDLL------AEKAKLRVLEDGKQQVQIVG 201
+F+ G V S EIY+ ++FDLL +E+ ++ K+ V I G
Sbjct: 125 QIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 181
Query: 202 LTEQVVDSVEEVLKLIQHGN-----------SASINNICFSFLQVH-------------- 236
L E V + +EV ++++ G + S + + +H
Sbjct: 182 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKI 241
Query: 237 GKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLT 296
GK +L+DLAG+E + + +++ R G IN+SLL L I AL + H+P+R SKLT
Sbjct: 242 GKLNLVDLAGSENIGRSGAVDKRAREAGN-INQSLLTLGRVITALVERTPHVPYRESKLT 300
Query: 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
++L+DS G +RT +IA ISP + E +L+TL YA R K +
Sbjct: 301 RILQDSLGGR-TRTSIIATISPASLNLEETLSTLEYAHRAKNI 342
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 157 bits (397), Expect = 4e-45
Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 27/263 (10%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
PL+++ +G FAYGQTGSGKT+TM G G+ +F ++
Sbjct: 112 MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP------ESVGVIPRTVDLLFDSIRG 165
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLAEKA---KLRVLEDGKQQVQIVGLTEQVVDSVEE 212
+ G + A+F EIY+ ++DLL+ + ++R+ ++ K + + +TE+ V
Sbjct: 166 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNH 225
Query: 213 VLKLIQ-----------HGNSASINNICFSFLQVHGK------FSLIDLAGNERGADTSS 255
+ L+ GN S + + L++ G+ S+ + + S
Sbjct: 226 LRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESP 285
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
E IN+SL L I AL +K H+P+R SKLT +L S G+ S+T M
Sbjct: 286 KTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN-SKTLMFIN 344
Query: 316 ISPGMSSCEHSLNTLRYADRVKE 338
+SP + S+ +LR+A V
Sbjct: 345 VSPFQDCFQESVKSLRFAASVNS 367
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 155 bits (393), Expect = 8e-45
Identities = 93/285 (32%), Positives = 139/285 (48%), Gaps = 46/285 (16%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+R + +++ FEG FAYGQTG+GK++TM G + ++GI +D+F
Sbjct: 71 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE----KDQQGIIPQLCEDLFSR 126
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEK--AKLRVLEDGKQQVQIVGLTEQVVDSV 210
+ ++ V S+ EIY +V DLL K LRV E + L++ V S
Sbjct: 127 INDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSY 186
Query: 211 EEVLKLIQHGN----------------SASINNICFS----------FLQVHGKFSLIDL 244
++ L+ GN S ++ NI F+ + K SL+DL
Sbjct: 187 NDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 246
Query: 245 AGNERGADTSSANRQTRMEGAEINKSLLALKECIRAL------------GRKGAHLPFRA 292
AG+ER AD++ A EGA INKSL L + I AL +K +P+R
Sbjct: 247 AGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 305
Query: 293 SKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVK 337
S LT +LR++ G+ SRT M+A +SP + + +L+TLRYADR K
Sbjct: 306 SVLTWLLRENLGGN-SRTAMVAALSPADINYDETLSTLRYADRAK 349
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 142 bits (358), Expect = 9e-40
Identities = 81/280 (28%), Positives = 117/280 (41%), Gaps = 46/280 (16%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
LV++ +G FAYGQTGSGKT TM G I +F +
Sbjct: 70 EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDG--------IIPSTISHIFNWINK 121
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLAEKAK-----------LRVLEDGKQQVQIVGLTE 204
K +G + V+ F EIY+ + DLL + + I +T
Sbjct: 122 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 181
Query: 205 QVVDSVEEVLKLIQHG-----------NSASINNICFSFLQV-----------HGKFSLI 242
++S E V +++ N S + + + +G +L+
Sbjct: 182 CKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLV 241
Query: 243 DLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALG---RKGAHLPFRASKLTQVL 299
DLAG+ER + + R E INKSL L + I ALG H+PFR SKLT +L
Sbjct: 242 DLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 300
Query: 300 RDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
+ S GD S+T M ISP S +LN+LR+A +V
Sbjct: 301 QYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASKVNST 339
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 139 bits (350), Expect = 2e-38
Identities = 88/271 (32%), Positives = 131/271 (48%), Gaps = 29/271 (10%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
F FS KP V I G T FAYGQTG+GK++TM G + + +F
Sbjct: 64 FDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRG--VIPRIVEQIFTS 121
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAE-KAKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ S + V S+ EIY ++ DLLA L V E+ + V + GL E V SV+
Sbjct: 122 ILSSA-ANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQ 180
Query: 212 EVLKLIQHG-----------NSASINNICFSFLQV-----------HGKFSLIDLAGNER 249
EV ++++ G N S + + + G+ L+DLAG+E+
Sbjct: 181 EVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEK 240
Query: 250 GADTSSANRQTRMEGAEINKSLLALKECIRALGR-KGAHLPFRASKLTQVLRDSFIGDKS 308
T ++ + INKSL AL I AL K +H+P+R SKLT++L++S G+ S
Sbjct: 241 VGKTGASGQTLEEAKK-INKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGN-S 298
Query: 309 RTCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
RT +I SP + +L+TLR+ R K +
Sbjct: 299 RTTLIINCSPSSYNDAETLSTLRFGMRAKSI 329
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 126 bits (316), Expect = 1e-33
Identities = 85/270 (31%), Positives = 129/270 (47%), Gaps = 35/270 (12%)
Query: 96 SAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLLKS 155
K LV++ +G FAYGQTGSGKT T+ G G+ A ++F+++K
Sbjct: 62 DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGAD------SNPGLTPRAMSELFRIMKK 115
Query: 156 PKYRGLNLHVSASFFEIYSGKVFDLLAEK----AKLRVLEDGKQQVQIVGLTEQVVDSVE 211
+ + + A E+Y + DLL K KL + +D K V + +T + + E
Sbjct: 116 DSNKF-SFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYE 174
Query: 212 EVLKLIQHG-----------NSASINNICFSFLQV-----------HGKFSLIDLAGNER 249
E+ +IQ G N S + + + GK S +DLAG+ER
Sbjct: 175 ELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSER 234
Query: 250 GADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSR 309
+ SA Q + E INKSL AL + I AL H+P+R KLT ++ DS G+ ++
Sbjct: 235 VKKSGSAGNQLK-EAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGN-AK 292
Query: 310 TCMIAMISPGMSSCEHSLNTLRYADRVKEL 339
T M ISP S+ + + N+L YA RV+ +
Sbjct: 293 TLMFVNISPAESNLDETHNSLTYASRVRSI 322
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 26.5 bits (57), Expect = 4.6
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 41 ELDALFSLNSNLMPKTNNENSQY-NNCRSMPLSGNKLSRCWKVLSLKN 87
EL+++ + +N + + QY N + L+GNKL+ + +LKN
Sbjct: 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKN 91
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 99
Score = 25.6 bits (56), Expect = 5.3
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 94 RFSAKPLVKTIFEGGMATCFAYG 116
R+ P +K EGG AYG
Sbjct: 73 RWKHHPSIKPTLEGG--KRIAYG 93
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 26.4 bits (58), Expect = 5.5
Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 243 DLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHL----PFRA--SKLT 296
D+ +T + G + ++ ++L RA+ + PF
Sbjct: 140 DITKFAEQDNTVLGEGGVTLSGGQ--RARISL---ARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRV 336
+ + +S + +++ + LR AD++
Sbjct: 195 EQVFESCVCKLMANKTRILVT-------SKMEHLRKADKI 227
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus
aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Length = 106
Score = 24.8 bits (54), Expect = 9.2
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 185 AKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQ 218
KL + + +Q+ +I +Q + + E++ + IQ
Sbjct: 67 KKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQ 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,312,031
Number of extensions: 57285
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 14
Length of query: 386
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,213,086
Effective search space: 362712714
Effective search space used: 362712714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)