BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy230
(222 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|322797836|gb|EFZ19744.1| hypothetical protein SINV_05937 [Solenopsis invicta]
Length = 240
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 154/231 (66%), Gaps = 12/231 (5%)
Query: 1 MAGDTLSL---------NAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRR 51
M GD LS+ N + +ILGPGLRRE +LV ++G+LR +P YYVD Q+R
Sbjct: 10 MPGDKLSIVVPVKKERGNEKEVVILGPGLRREGDTVLVCKAGVLRKREPAVYYVDCYQKR 69
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
Y+P RG+ VIG+VT + GD Y+VDIG+ D A LSYLAFEGATKKN P V+ GD+V KLL
Sbjct: 70 YIPNRGENVIGIVTQKSGDIYKVDIGASDQATLSYLAFEGATKKNRPDVQVGDLVYAKLL 129
Query: 112 TANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQK 170
A+KDME E+VCVDS GKE +G+L +DG + S+SL RKLLNP+CPL K L + Q
Sbjct: 130 VASKDMEPELVCVDSHGKENDLGVLSSDGMMFTCSLSLVRKLLNPECPLFKLLGQ--NQM 187
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
EL+ GMNG+IWI+ S +T+ V N I++ E E+ LC I FL
Sbjct: 188 YELAAGMNGRIWIKARSVQETIAVANAILAAEYTIPSEMQKLCTKIEKIFL 238
>gi|383865315|ref|XP_003708120.1| PREDICTED: exosome complex component RRP40-like [Megachile
rotundata]
Length = 241
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 154/226 (68%), Gaps = 7/226 (3%)
Query: 1 MAGDTL----SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTR 56
M GDT+ ++N + +ILGPGLRRE+ + ++GIL+ A+P YYVD Q+RY+P R
Sbjct: 10 MPGDTVKDITTVNKKETIILGPGLRREADTVFAYKAGILKKAEPAVYYVDTYQKRYIPNR 69
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
G+ V+G+VT + GD ++VDIG+ D A LSYLAFEGATKKN P ++ GD+V KLL A+KD
Sbjct: 70 GENVVGIVTQKGGDIFKVDIGASDQASLSYLAFEGATKKNRPDIQVGDLVYAKLLVASKD 129
Query: 117 MESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
MESE+VCVDS GKE +G+L NDG L S+SL RK+LN K PL K LA + Q E++
Sbjct: 130 MESELVCVDSHGKEKNLGVLSNDGMLFTCSLSLIRKILNQKSPLFKTLA--NSQAFEVAA 187
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
GMNG++W++ + +T+ V N I++ E + I LC I L
Sbjct: 188 GMNGRVWVKARTIHETIAVANAILAAEYATPNYIKKLCSDIEKTLL 233
>gi|332025490|gb|EGI65653.1| Exosome complex exonuclease RRP40 [Acromyrmex echinatior]
Length = 241
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 151/215 (70%), Gaps = 4/215 (1%)
Query: 9 NAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRV 68
N + +ILGPGLRRE A+L+ ++G+LR +P YYVD Q+RY+P+RG+ V+G+VT +
Sbjct: 27 NEKEIVILGPGLRREDDAVLICKAGVLRKREPAVYYVDSYQKRYIPSRGENVVGIVTQKS 86
Query: 69 GDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG 128
GD Y+VDIG + A LSYLAFEGATKKN P V+ GD+V GKLL A+KDME E+VCVDS G
Sbjct: 87 GDIYKVDIGGSEQATLSYLAFEGATKKNRPDVQIGDLVYGKLLVASKDMEPELVCVDSHG 146
Query: 129 KEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
KE +G+L +DG + S+SL RKLLNP+CPL + L + Q EL+ GMNG+IWI+ S
Sbjct: 147 KENELGMLSSDGMMFICSLSLVRKLLNPECPLFRLLGR--NQAYELAAGMNGRIWIKARS 204
Query: 188 FSDTVRVGNLIMSCELLSYEEILNLCESIH-IRFL 221
+T+ V N I++ E E+ LC I I FL
Sbjct: 205 VQETIAVANAILAAEFTVSSEMQKLCSKIEKILFL 239
>gi|170063463|ref|XP_001867115.1| exosome complex exonuclease RRP40 [Culex quinquefasciatus]
gi|167881089|gb|EDS44472.1| exosome complex exonuclease RRP40 [Culex quinquefasciatus]
Length = 238
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 150/205 (73%), Gaps = 3/205 (1%)
Query: 13 RLILGPGLRRE-SSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
++ILGPGLR++ +LV +SG+LR P T++VD Q+RYVP RG++VIG+VT + GD
Sbjct: 27 KVILGPGLRQDRDDLVLVCKSGVLRKKPPNTFWVDCHQKRYVPNRGEIVIGIVTQKAGDI 86
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
+RVDIG+ +PA LSY+AFEGATKKN P V G+V+ +LL ANKD+E E++CVDS GK+
Sbjct: 87 FRVDIGASEPASLSYMAFEGATKKNRPDVNVGEVICARLLIANKDLEPELICVDSHGKKG 146
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
+G L DG++ + SI+L RK+LNPKCP L LAK E++ GMNG+IW++ ++ +T
Sbjct: 147 KLGALQDGFVFNCSINLVRKILNPKCPFLDLLAK--ELAFEMAAGMNGRIWVKGKTVKET 204
Query: 192 VRVGNLIMSCELLSYEEILNLCESI 216
+ VGN I++ E S EE+ LC+ I
Sbjct: 205 IAVGNAILAVEFKSNEELRELCDDI 229
>gi|307206972|gb|EFN84811.1| Exosome complex exonuclease RRP40 [Harpegnathos saltator]
Length = 236
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 148/210 (70%), Gaps = 3/210 (1%)
Query: 9 NAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRV 68
N + +ILGPGLRR++ AI + ++GIL+ +P YYVD Q+RY+P+RG+ ++G++T +
Sbjct: 22 NEKEVVILGPGLRRDNDAIFICKAGILKKREPAVYYVDGYQKRYIPSRGENIVGIITQKA 81
Query: 69 GDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG 128
GD Y+VDIG+ + A LSYLAFEGA+KKN P ++ GDVV KLL A+KDME E+VCVDS+G
Sbjct: 82 GDIYKVDIGASEQASLSYLAFEGASKKNRPDIQIGDVVFAKLLIASKDMEPELVCVDSQG 141
Query: 129 KEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
KE +G+L DG + S+SL RK+LNP CPL K L K Q E+++GMNGKIWI+ S
Sbjct: 142 KENDLGVLGTDGMMFTCSLSLVRKILNPDCPLFKLLGK--NQAYEIAVGMNGKIWIKARS 199
Query: 188 FSDTVRVGNLIMSCELLSYEEILNLCESIH 217
+T+ V N I++ E E+ LC I
Sbjct: 200 VQETIAVANAILAAEYTVPAEMNKLCAKIE 229
>gi|157134439|ref|XP_001663303.1| hypothetical protein AaeL_AAEL013103 [Aedes aegypti]
gi|108870467|gb|EAT34692.1| AAEL013103-PA [Aedes aegypti]
gi|122937754|gb|ABM68596.1| AAEL013103-PA [Aedes aegypti]
Length = 237
Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 148/205 (72%), Gaps = 3/205 (1%)
Query: 13 RLILGPGLRRE-SSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
+++LGPGLR++ A+LV +SG+LR P T++VD Q+RYVP R ++V+G+VT + GD
Sbjct: 27 KVVLGPGLRQDRDDAVLVCKSGVLRKKTPNTFWVDCYQKRYVPNRSEIVVGIVTQKAGDI 86
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
+RVDIG +PA LSYLAFEGATKKN P V GD + +LL AN+D+E E++CVDS GK+
Sbjct: 87 FRVDIGGSEPASLSYLAFEGATKKNRPDVNVGDAICARLLIANRDLEPELICVDSHGKKG 146
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
+G+L DG++ + SI+L RK+LNPKC L LAK E++ GMNG+IWI+ ++ +T
Sbjct: 147 KLGVLQDGFVFNCSINLVRKILNPKCVFLDLLAK--EMAFEMAAGMNGRIWIKGKTVKET 204
Query: 192 VRVGNLIMSCELLSYEEILNLCESI 216
+ VGN I++ E S +E+ LC+ I
Sbjct: 205 IAVGNAILAVEFKSNDELKELCDDI 229
>gi|157105451|ref|XP_001648874.1| hypothetical protein AaeL_AAEL014498 [Aedes aegypti]
gi|108869016|gb|EAT33241.1| AAEL014498-PA [Aedes aegypti]
Length = 237
Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 148/205 (72%), Gaps = 3/205 (1%)
Query: 13 RLILGPGLRRE-SSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
+++LGPGLR++ A+LV +SG+LR P T++VD Q+RYVP R ++V+G+VT + GD
Sbjct: 27 KVVLGPGLRQDKDDAVLVCKSGVLRKKTPNTFWVDCYQKRYVPNRSEIVVGIVTQKAGDI 86
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
+RVDIG +PA LSYLAFEGATKKN P V GD + +LL AN+D+E E++CVDS GK+
Sbjct: 87 FRVDIGGSEPASLSYLAFEGATKKNRPDVNVGDAICARLLIANRDLEPELICVDSHGKKG 146
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
+G+L DG++ + SI+L RK+LNPKC L LAK E++ GMNG+IWI+ ++ +T
Sbjct: 147 KLGVLQDGFVFNCSINLVRKILNPKCVFLDLLAK--EMAFEIAAGMNGRIWIKGKTVKET 204
Query: 192 VRVGNLIMSCELLSYEEILNLCESI 216
+ VGN I++ E S +E+ LC+ I
Sbjct: 205 IAVGNAILAVEFKSNDELKELCDDI 229
>gi|237648986|ref|NP_001153670.1| exosome complex exonuclease Rrp40 [Bombyx mori]
gi|224814347|gb|ACN65392.1| exosome complex exonuclease [Bombyx mori]
Length = 236
Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 149/206 (72%), Gaps = 2/206 (0%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
+++LGPGLR+E + + +++ G+LR P TY+VD Q+RYVP+RG+ VIG V + GD +
Sbjct: 26 KVLLGPGLRKEINGVFITKPGVLRKRTPNTYWVDNYQKRYVPSRGENVIGTVVQKAGDIF 85
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVD+G A LSYL+FEGATKKN P ++TGDVV K+L A+KDME E+VCVDS GK+
Sbjct: 86 RVDVGGSCAASLSYLSFEGATKKNRPAIKTGDVVYAKMLNASKDMEPELVCVDSHGKKGR 145
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L +G++ S++L RK+LNP CPLL L ++ EL+ GMNG+IWI+ + +T+
Sbjct: 146 LGVLEEGFVFKCSLNLIRKILNPHCPLLNSL--KNEWPFELAAGMNGRIWIKANTMRETL 203
Query: 193 RVGNLIMSCELLSYEEILNLCESIHI 218
+GN I+ E LS +EI ++C++I +
Sbjct: 204 ALGNAILGSEYLSNDEIKSMCKNIAV 229
>gi|119114696|ref|XP_319438.3| AGAP010247-PA [Anopheles gambiae str. PEST]
gi|116118540|gb|EAA43646.3| AGAP010247-PA [Anopheles gambiae str. PEST]
Length = 238
Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 151/221 (68%), Gaps = 7/221 (3%)
Query: 1 MAGDTLS-----LNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPT 55
+AGD +S + A ++ILGPG+R E + S+ G+L+ P T++VD QRRYVP
Sbjct: 11 LAGDIISEPMEMMKANKKVILGPGIRVEKETVRASKCGMLKMKPPNTFWVDAYQRRYVPN 70
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
RG+LVIGVV ++ GD +R+DIG + A LSY+AFEGATKKN P V GD+V +LL A+
Sbjct: 71 RGELVIGVVMAKTGDTFRLDIGGSETASLSYMAFEGATKKNRPDVNVGDIVYARLLIAHP 130
Query: 116 DMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
D+E E+VCVDS GK+ +G+L+DG+++ S++L RK+LNPK L QLAK E++
Sbjct: 131 DVEPELVCVDSHGKKGKLGVLHDGFMISCSLNLVRKILNPKSNFLSQLAK--ELPFEIAA 188
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
GMNG+IWIR + +T+ VGN I++ E L + I LC+ I
Sbjct: 189 GMNGRIWIRGRTIKETIAVGNAILALEYLPNDRIRELCDDI 229
>gi|312385541|gb|EFR30016.1| hypothetical protein AND_00665 [Anopheles darlingi]
Length = 234
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 152/221 (68%), Gaps = 7/221 (3%)
Query: 1 MAGDTL-----SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPT 55
+AGD + + ++ILGPGLR + + S+ G L+ P T++VD Q+RYVPT
Sbjct: 7 LAGDVIIEPMEMIKTSKKVILGPGLRMDQDVVRASKCGQLKTKPPNTFWVDAHQKRYVPT 66
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
RG+LV+GVV ++ GD +RVDIGS + A LSY+AFEGATKKN P V GD+V +LL A+
Sbjct: 67 RGELVVGVVMAKAGDIFRVDIGSSETASLSYVAFEGATKKNRPDVNIGDIVYARLLIAHP 126
Query: 116 DMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
D+E E+VCVDS GK+ +GIL+DG+LL S++L RK+LNPKC L L+K K EL+
Sbjct: 127 DVEPELVCVDSHGKKGKLGILHDGFLLSCSLNLIRKILNPKCTFLSLLSK--ELKFELAA 184
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
GMNG++WIR ++ +T+ +GN I++ E + ++I LC I
Sbjct: 185 GMNGRLWIRGKTVKETIAIGNAILALEFVPSDQIRELCNDI 225
>gi|195115371|ref|XP_002002230.1| GI17269 [Drosophila mojavensis]
gi|193912805|gb|EDW11672.1| GI17269 [Drosophila mojavensis]
Length = 232
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 137/205 (66%), Gaps = 2/205 (0%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH P T++VD QRRYVP RGDL+IG+V +RVGD Y
Sbjct: 25 RVILGPGLRRLDDKVVASKAGPLRHKDPNTFWVDNYQRRYVPARGDLIIGIVKARVGDIY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIGS D A +SYLAFE ATKKN P + GD++ ++L AN D+E E+VCV+S GK
Sbjct: 85 RVDIGSADTAAISYLAFEAATKKNRPDLNPGDLLYARVLNANADIEPELVCVNSNGKRGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L DG+ S++L R LL CP L L E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLQDGFFFKCSLNLARLLLRESCPALAALT--DELPFEIAVGVNGRIWVKAHSMRETV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESIH 217
+ N IMS E Y EI +C ++
Sbjct: 203 GLANAIMSLEQAGYAEIDKICGDLN 227
>gi|307191134|gb|EFN74832.1| Exosome complex exonuclease RRP40 [Camponotus floridanus]
Length = 241
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 145/214 (67%), Gaps = 3/214 (1%)
Query: 9 NAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRV 68
N +ILGPGLRRE + V ++GIL+ P YYVD Q+RY+P+RG+ V+G+VT +
Sbjct: 27 NERENVILGPGLRREGDKVYVCKAGILKRRDPAVYYVDSYQKRYIPSRGENVVGIVTQKS 86
Query: 69 GDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG 128
GD Y+VD+G+ + A LSYLAFEGATKKN P ++ GDV+ K+L A+KDME E+VCVDS+G
Sbjct: 87 GDIYKVDVGASEQATLSYLAFEGATKKNRPDLQVGDVIYAKMLVASKDMEPELVCVDSQG 146
Query: 129 KEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
KE +G+L +DG + S+SL RKLLNP+CPL + L + Q EL+ GMNG+IWI+ S
Sbjct: 147 KENELGVLSSDGMVFTCSLSLVRKLLNPECPLFRILGR--NQAYELAAGMNGRIWIKARS 204
Query: 188 FSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+T+ N I++ E E+ LC I L
Sbjct: 205 VQETIAAANAILAAEYTVASEMQKLCARIEKTLL 238
>gi|195063881|ref|XP_001996460.1| GH25200 [Drosophila grimshawi]
gi|193895325|gb|EDV94191.1| GH25200 [Drosophila grimshawi]
Length = 232
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 138/204 (67%), Gaps = 2/204 (0%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH +P T++VD QRRYVP RGDL+IG+V +R GD Y
Sbjct: 25 RIILGPGLRRVDDKVVASKAGPLRHKEPNTFWVDSYQRRYVPARGDLIIGIVKARAGDMY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIGS D A +SYLAFE ATKKN P + GD++ ++L AN D+E E+VCV+S GK
Sbjct: 85 RVDIGSADTASISYLAFEAATKKNRPDLNPGDLLYARVLNANADIEPELVCVNSNGKHGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L DG+ S++L R LL CP L + + E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLQDGFFFKCSLNLGRLLLRDSCPALAAI--KDELPYEIAVGVNGRIWVKAHSTRETV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESI 216
+ N IM+ E Y EI +C ++
Sbjct: 203 GLANAIMTLEHAGYAEIDKICGNL 226
>gi|195148780|ref|XP_002015341.1| GL19652 [Drosophila persimilis]
gi|194107294|gb|EDW29337.1| GL19652 [Drosophila persimilis]
Length = 232
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 139/206 (67%), Gaps = 2/206 (0%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
E R+ILGPGLRR ++ S++G LRH +P TY++D QRRYVP RGDLV+G++ + GD
Sbjct: 23 EKRVILGPGLRRLDDTVVASKAGPLRHKEPGTYWIDNYQRRYVPARGDLVLGIIKGKAGD 82
Query: 71 NYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
YRVDIGS D A +SYLAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 83 QYRVDIGSADIASISYLAFEAATKKNRPDLNPGDIIYARVLNASADIEPELVCVNSNGKR 142
Query: 131 FIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSD 190
+G+L DG+ +++L R LL CP L L + E++IG+NG+IW++ S +
Sbjct: 143 GKLGLLADGFFFKCTLNLGRLLLRENCPALAALTR--ELPYEIAIGVNGRIWVKANSLRE 200
Query: 191 TVRVGNLIMSCELLSYEEILNLCESI 216
T+ + N I++ E Y EI +C+S+
Sbjct: 201 TMALSNAILTMEQAGYTEIDKICDSL 226
>gi|156543108|ref|XP_001605422.1| PREDICTED: exosome complex component RRP40-like [Nasonia
vitripennis]
Length = 236
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 154/222 (69%), Gaps = 9/222 (4%)
Query: 1 MAGDTL----SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTR 56
M GD + S + ++ILGPGLR + + ++GIL+ + YYVD Q+RY+P++
Sbjct: 10 MPGDRIQGIESADKNQKVILGPGLRTDGETVYACKAGILKK-RISIYYVDSYQKRYIPSQ 68
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
G+ V+GVVT + GD +RVDIG+++PA LSYL FEGA+K+N P V+ GD+V KL+ A+KD
Sbjct: 69 GENVVGVVTQKAGDIFRVDIGANEPAALSYLGFEGASKRNRPDVQVGDIVYAKLIVASKD 128
Query: 117 MESEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
MESE+VCVDS GK+ +G+L+ +G LL S+SL RK+L CPLL+ L++ K E+++
Sbjct: 129 MESELVCVDSFGKKGKLGVLSPNGMLLTCSLSLVRKILKANCPLLRLLSE--ELKYEIAV 186
Query: 176 GMNGKIWIRCE-SFSDTVRVGNLIMSCELLSYEEILNLCESI 216
GMNGKIWI+ + S DT+ V N I++ E EE +LC SI
Sbjct: 187 GMNGKIWIKSKSSVEDTIAVANAILAAEFTPPEEYQSLCNSI 228
>gi|242018143|ref|XP_002429540.1| Exosome complex exonuclease RRP40, putative [Pediculus humanus
corporis]
gi|212514488|gb|EEB16802.1| Exosome complex exonuclease RRP40, putative [Pediculus humanus
corporis]
Length = 236
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 150/218 (68%), Gaps = 4/218 (1%)
Query: 3 GDT-LSLNAE--PRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDL 59
GD L L AE ++I+GPGLR S+ I+ ++ GIL Y+VD Q+RYVP +G+
Sbjct: 12 GDVILDLTAEVKSKIIVGPGLRVSSNKIIATKCGILHKKGSNVYWVDSRQKRYVPAKGET 71
Query: 60 VIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
++GV+T++ GD ++V+IG+ + A L YLAFEGATKK P + GDVV +LL ANKD+E
Sbjct: 72 IVGVITNKSGDIFKVEIGASEQAQLPYLAFEGATKKFRPNINVGDVVYARLLVANKDLEP 131
Query: 120 EMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN 178
E+VCVDS GK+ +G+L +DG++ + S++L RK+LNPKCPL+ + + E++ GMN
Sbjct: 132 ELVCVDSHGKKGKLGVLPSDGFMFNCSLNLVRKILNPKCPLIDTFQRTLQIPFEIAAGMN 191
Query: 179 GKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
G IWI+ ++ ++T+ V N I++ E S EI LCE+I
Sbjct: 192 GNIWIKAKTVNETIAVANAILAAEYKSDSEIKELCENI 229
>gi|125986325|ref|XP_001356926.1| GA16580 [Drosophila pseudoobscura pseudoobscura]
gi|54645252|gb|EAL33992.1| GA16580 [Drosophila pseudoobscura pseudoobscura]
Length = 232
Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 139/206 (67%), Gaps = 2/206 (0%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
E R+ILGPGLRR ++ S++G LRH +P TY++D QRRYVP RGDLV+G++ + GD
Sbjct: 23 EKRVILGPGLRRLDDTVVASKAGPLRHKEPGTYWIDNYQRRYVPARGDLVLGIIKGKAGD 82
Query: 71 NYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
YRVDIGS D A +SYLAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 83 QYRVDIGSADIASISYLAFEAATKKNRPDLNPGDIIYARVLNASADIEPELVCVNSNGKR 142
Query: 131 FIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSD 190
+G+L DG+ +++L R LL CP L L + E++IG+NG+IW++ S +
Sbjct: 143 GKLGLLADGFFFKCTLNLGRLLLRENCPALAALTR--ELPYEIAIGVNGRIWVKANSLRE 200
Query: 191 TVRVGNLIMSCELLSYEEILNLCESI 216
T+ + N I++ E Y EI +C+S+
Sbjct: 201 TMALSNAILTMEQAGYTEIDKICDSL 226
>gi|195387098|ref|XP_002052241.1| GJ22758 [Drosophila virilis]
gi|194148698|gb|EDW64396.1| GJ22758 [Drosophila virilis]
Length = 232
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 138/204 (67%), Gaps = 2/204 (0%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ +++G LRH +P T++VD QRRYVP RGDL+IG+V +R GD Y
Sbjct: 25 RIILGPGLRRVDEKVVATKAGPLRHKEPNTFWVDNYQRRYVPARGDLIIGIVKARAGDLY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG+ D A +SYLAFE ATKKN P + GD++ ++L AN D+E E+VCV+S GK
Sbjct: 85 RVDIGAADLASISYLAFEAATKKNRPDLNPGDLLYARVLNANADIEPELVCVNSNGKRGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L DG+ S++L R LL CP L L + E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLQDGFFFKCSLNLGRLLLRESCPALAALTE--ELPYEIAVGVNGRIWVKAHSTRETV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESI 216
+ N IM+ E Y EI +C ++
Sbjct: 203 GLANAIMTLEQAGYAEIEKICGNL 226
>gi|350411956|ref|XP_003489500.1| PREDICTED: exosome complex component RRP40-like [Bombus impatiens]
Length = 269
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 146/226 (64%), Gaps = 7/226 (3%)
Query: 1 MAGDTL----SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTR 56
M GDT+ ++ + +ILGPGLRRE+ + ++G+L+ +P YYVD Q+RYVP R
Sbjct: 38 MPGDTIKDITTITKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKRYVPNR 97
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
G+ V+G+VT R D ++VDIG+ + A LSYLAFEGATKKN P ++ GD+V KLL A+KD
Sbjct: 98 GENVVGIVTQRSSDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLLVASKD 157
Query: 117 MESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
ME E+VCVDS GKE +G L ++G L S+SL RK+LN L K L++ Q E+++
Sbjct: 158 MEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSLLFKTLSR--SQAFEVAV 215
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
GMNG++W++ + +T+ V I++ E I LC I L
Sbjct: 216 GMNGRVWVKARTIQETIAVATAILAAEYAPPNGIKKLCLDIEKTLL 261
>gi|340711298|ref|XP_003394215.1| PREDICTED: exosome complex component RRP40-like isoform 1 [Bombus
terrestris]
Length = 257
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 142/219 (64%), Gaps = 3/219 (1%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
D ++N + +ILGPGLRRE+ + ++G+L+ +P YYVD Q+RY+P RG+ V+G+
Sbjct: 33 DITTINKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKRYIPNRGENVVGI 92
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
VT R D ++VDIG+ + A LSYLAFEGATKKN P ++ GD+V KLL A+KDME E+VC
Sbjct: 93 VTQRSSDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLLVASKDMEPELVC 152
Query: 124 VDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
VDS GKE +G L ++G L S+SL RK+LN L LA+ Q E+++GMNG++W
Sbjct: 153 VDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSLLFNTLAR--SQAYEVAVGMNGRVW 210
Query: 183 IRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
++ + +T+ V I++ E I LC I L
Sbjct: 211 VKARTIQETIAVATAILAAEYAPPNGIKKLCLDIEKTLL 249
>gi|340711300|ref|XP_003394216.1| PREDICTED: exosome complex component RRP40-like isoform 2 [Bombus
terrestris]
Length = 244
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 142/219 (64%), Gaps = 3/219 (1%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
D ++N + +ILGPGLRRE+ + ++G+L+ +P YYVD Q+RY+P RG+ V+G+
Sbjct: 20 DITTINKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKRYIPNRGENVVGI 79
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
VT R D ++VDIG+ + A LSYLAFEGATKKN P ++ GD+V KLL A+KDME E+VC
Sbjct: 80 VTQRSSDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLLVASKDMEPELVC 139
Query: 124 VDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
VDS GKE +G L ++G L S+SL RK+LN L LA+ Q E+++GMNG++W
Sbjct: 140 VDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSLLFNTLAR--SQAYEVAVGMNGRVW 197
Query: 183 IRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
++ + +T+ V I++ E I LC I L
Sbjct: 198 VKARTIQETIAVATAILAAEYAPPNGIKKLCLDIEKTLL 236
>gi|225581104|gb|ACN94677.1| GA16580 [Drosophila miranda]
Length = 233
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 139/206 (67%), Gaps = 2/206 (0%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
E R+ILGPGLRR ++ +++G LRH +P TY++D QRRY+P RGDLV+G++ + GD
Sbjct: 24 EKRVILGPGLRRLDDTVVATKAGPLRHKEPGTYWIDNYQRRYMPARGDLVLGIIKGKAGD 83
Query: 71 NYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
YRV+IGS D A +SYLAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 84 QYRVEIGSADIASISYLAFEAATKKNRPDLNPGDIIYARVLNASADIEPELVCVNSNGKR 143
Query: 131 FIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSD 190
+G+L DG+ +++L R LL CP L L + E++IG+NG+IW++ S +
Sbjct: 144 GKLGLLADGFFFKCTLNLGRLLLRENCPALAALTR--ELPYEIAIGVNGRIWVKANSLRE 201
Query: 191 TVRVGNLIMSCELLSYEEILNLCESI 216
T+ + N I++ E Y EI +C+S+
Sbjct: 202 TMALSNAILTMEQAGYTEIDKICDSL 227
>gi|380030285|ref|XP_003698781.1| PREDICTED: exosome complex component RRP40-like [Apis florea]
Length = 241
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 147/226 (65%), Gaps = 7/226 (3%)
Query: 1 MAGDTL----SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTR 56
M GDT+ ++N + +ILGPGLRRE+ + ++GIL+ +P YYVD Q+RYVP R
Sbjct: 10 MPGDTVKDITTINKKETIILGPGLRREADTVFAYKAGILKKTEPAVYYVDSYQKRYVPNR 69
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
G+ V+G+VT + GD ++VDIG+ + A LSYLAFEGATKKN P ++ GD+V KLL A+KD
Sbjct: 70 GEHVVGIVTQKGGDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLLVASKD 129
Query: 117 MESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
ME E+VCVDS GKE +G L ++G L S+SL RK+LN PL K LA Q E++
Sbjct: 130 MEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLIRKILNRNSPLFKTLA--HNQAFEVAA 187
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
GMNG++W++ + +T+ + I++ E I LC I L
Sbjct: 188 GMNGRVWVKARTIQETIAIATAILAAEYAPPNSIKKLCSDIEKTLL 233
>gi|390361521|ref|XP_003729944.1| PREDICTED: exosome complex component RRP40-like isoform 1
[Strongylocentrotus purpuratus]
Length = 226
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 140/198 (70%), Gaps = 3/198 (1%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
++ LGPGLR++ + I +++GIL+ P T+++D Q+RYVP +GD V+GVVT + GD +
Sbjct: 11 KMTLGPGLRQDETKIFSTKAGILKRKNPHTFWIDCHQKRYVPAKGDKVLGVVTQKAGDVF 70
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG A+LSYLAFEGATK+N P V+ GDVV KLL AN+DME E+VC+DS G+
Sbjct: 71 RVDIGGQSQAILSYLAFEGATKRNRPNVQVGDVVYAKLLVANRDMEPELVCIDSSGRSQG 130
Query: 133 MGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
+G++ +DG++ ++ L R+LL CP+LK L ++ E++IGMNG+IW+R +S T
Sbjct: 131 LGVVGSDGFMFRCTLGLVRRLLLKDCPMLKFLGEKI--SYEIAIGMNGRIWVRAKSIHTT 188
Query: 192 VRVGNLIMSCELLSYEEI 209
+ V + +CE +S +++
Sbjct: 189 IAVVTALTNCEFMSEDDM 206
>gi|390361523|ref|XP_781285.3| PREDICTED: exosome complex component RRP40-like isoform 2
[Strongylocentrotus purpuratus]
Length = 241
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 140/198 (70%), Gaps = 3/198 (1%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
++ LGPGLR++ + I +++GIL+ P T+++D Q+RYVP +GD V+GVVT + GD +
Sbjct: 26 KITLGPGLRQDETKIFSTKAGILKQKNPHTFWIDCHQKRYVPAKGDKVLGVVTQKAGDVF 85
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG A+LSYLAFEGATK+N P V+ GDVV KLL AN+DME E+VC+DS G+
Sbjct: 86 RVDIGGQSQAILSYLAFEGATKRNRPNVQVGDVVYAKLLVANRDMEPELVCIDSSGRSQG 145
Query: 133 MGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
+G++ +DG++ ++ L R+LL CP+LK L ++ E++IGMNG+IW+R +S T
Sbjct: 146 LGVVGSDGFMFRCTLGLVRRLLLKDCPMLKFLGEKI--SYEIAIGMNGRIWVRAKSIHTT 203
Query: 192 VRVGNLIMSCELLSYEEI 209
+ V + +CE +S +++
Sbjct: 204 IAVVTALTNCEFMSEDDM 221
>gi|195443258|ref|XP_002069343.1| GK20196 [Drosophila willistoni]
gi|194165428|gb|EDW80329.1| GK20196 [Drosophila willistoni]
Length = 235
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 138/201 (68%), Gaps = 2/201 (0%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH P T++VD QRRYVP RGDLV+G+V ++ GD Y
Sbjct: 28 RVILGPGLRRLDDTVVASKAGPLRHKDPNTFWVDNYQRRYVPARGDLVLGLVKAKAGDLY 87
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIGS D A +S+LAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 88 RVDIGSADTASISFLAFEAATKKNRPDLNPGDLIYARVLNASADIEPELVCVNSNGKRGK 147
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L+DG+ S++L R LL CP L L + + E+++G+NG+IW++ S +T+
Sbjct: 148 LGVLSDGFFFKCSLNLGRVLLRENCPALTALTR--QLPYEIAVGVNGRIWLKARSMRETM 205
Query: 193 RVGNLIMSCELLSYEEILNLC 213
+ N I+S E +Y +I +C
Sbjct: 206 ALSNSILSLEQTNYSQIDRIC 226
>gi|48135934|ref|XP_396758.1| PREDICTED: exosome complex exonuclease RRP40 [Apis mellifera]
Length = 241
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 146/226 (64%), Gaps = 7/226 (3%)
Query: 1 MAGDTLS----LNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTR 56
M GDT+ +N + +ILGPGLRRE+ + ++GIL+ +P YYVD Q+RYVP R
Sbjct: 10 MPGDTIKDITIINKKETIILGPGLRREADTVFAYKAGILKKTEPAVYYVDSYQKRYVPNR 69
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
G+ V+G+VT + GD ++VDIG+ + A LSYLAFEGATKKN P ++ GD+V KLL A+KD
Sbjct: 70 GEHVVGIVTQKGGDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLLVASKD 129
Query: 117 MESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
ME E+VCVDS GKE +G L ++G L S+SL RK+LN PL K LA Q E++
Sbjct: 130 MEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLIRKILNRNSPLFKTLA--HNQAFEVAA 187
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
GMNG++W++ + +T+ + I++ E I LC I L
Sbjct: 188 GMNGRVWVKARTIQETIAIATAILAAEYAPPNGIKKLCSDIEKTLL 233
>gi|301613770|ref|XP_002936379.1| PREDICTED: exosome complex exonuclease RRP40-like [Xenopus
(Silurana) tropicalis]
Length = 286
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 140/203 (68%), Gaps = 3/203 (1%)
Query: 7 SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
S + PR++ GPGL R+ +LV++ G+LRH P Y+VD Q+RYVP +GD VIG+VT+
Sbjct: 73 STSNRPRVVCGPGLMRQEDDLLVNKCGLLRHRDPAIYWVDSQQKRYVPVKGDHVIGIVTT 132
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
+ GD ++VD+G + A LSYLAFEGATKKN P V+ GD+V G+ + ANKDME EM C+DS
Sbjct: 133 KSGDIFKVDVGGSEQASLSYLAFEGATKKNRPNVKVGDLVYGQFIVANKDMEPEMACIDS 192
Query: 127 RGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
GK G++ DG +L S+ L RKLL P+ ++++L ME+ IGMNG+IW++
Sbjct: 193 SGKANGKGVIGQDGLMLKVSLGLVRKLLIPQNDIVQELMNIF--PMEVVIGMNGRIWVKA 250
Query: 186 ESFSDTVRVGNLIMSCELLSYEE 208
++ T+ V NL+ +CE L+ E+
Sbjct: 251 KTVQQTLIVANLLEACEYLTAEQ 273
>gi|405950156|gb|EKC18159.1| Exosome complex exonuclease RRP40 [Crassostrea gigas]
Length = 236
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 143/206 (69%), Gaps = 4/206 (1%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
+++LGPG+R+E+ ++VS+ G+L+ +P Y+VD Q+RY+P RGD VIG++T++ GD +
Sbjct: 26 KVVLGPGIRQETDLVIVSKPGVLKFKEPNIYWVDSFQKRYIPQRGDSVIGIITTKAGDVF 85
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVD+G+ + A L YLAFE ATK+N P V+ GD+V K L ANKDME E+VC+D GK
Sbjct: 86 RVDVGASELATLPYLAFESATKRNRPDVKVGDIVYCKFLVANKDMEPELVCIDGSGKSAG 145
Query: 133 MGIL--NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSD 190
+G++ + G LL I+L +K+L+P+C L K L K K E+++GMNG+IWI+C + +
Sbjct: 146 LGVIGRDGGMLLQVPINLVQKVLSPECVLFKTLGK--NLKYEVAVGMNGRIWIKCHTVME 203
Query: 191 TVRVGNLIMSCELLSYEEILNLCESI 216
T+ V N I + ++ ++I +C +
Sbjct: 204 TIAVANAISVSQHMTNQDIQIMCSQM 229
>gi|194854233|ref|XP_001968313.1| GG24804 [Drosophila erecta]
gi|190660180|gb|EDV57372.1| GG24804 [Drosophila erecta]
Length = 232
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 146/226 (64%), Gaps = 7/226 (3%)
Query: 1 MAGDTLS----LNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTR 56
M GD ++ L R+ILGPGLRR ++ S++G LRH +P T++VD QRRY+P R
Sbjct: 9 MPGDRITAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIPAR 68
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
GDLV+G+V S+ GD YRVDIG+ D A +SYLAFE ATKKN P + GD++ ++L A+ D
Sbjct: 69 GDLVLGIVRSKAGDLYRVDIGAADTASISYLAFEAATKKNRPDLNPGDLIYARVLNASAD 128
Query: 117 MESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG 176
+ESE+VCV+S GK +G+L +G+ S++L R LL CP+L L + E+++G
Sbjct: 129 IESELVCVNSVGKRGKLGVLAEGFFFKCSLNLGRMLLRENCPVLTALTR--ELPYEIAVG 186
Query: 177 MNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
+NG+IW+ S +TV + N I + E EI +C ++ FLQ
Sbjct: 187 VNGRIWLNAHSLKETVALANAISALEQTGCAEIDKICGNLG-DFLQ 231
>gi|195454637|ref|XP_002074335.1| GK18349 [Drosophila willistoni]
gi|194170420|gb|EDW85321.1| GK18349 [Drosophila willistoni]
Length = 235
Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 137/201 (68%), Gaps = 2/201 (0%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH P T++VD QRRYVP RGDLV+G+V ++ GD Y
Sbjct: 28 RVILGPGLRRLDDTVVASKAGPLRHKDPNTFWVDNYQRRYVPARGDLVLGLVKAKAGDLY 87
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIGS D A +S+LAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 88 RVDIGSADTASISFLAFEAATKKNRPDLNPGDLIYARVLNASADIEPELVCVNSNGKRGK 147
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L+DG+ S++L R LL CP L + + E+++G+NG+IW++ S +T+
Sbjct: 148 LGVLSDGFFFKCSLNLGRVLLRENCPALTAFTR--QLPYEIAVGVNGRIWLKARSMRETM 205
Query: 193 RVGNLIMSCELLSYEEILNLC 213
+ N I+S E +Y +I +C
Sbjct: 206 ALSNSILSLEQTNYSQIDRIC 226
>gi|194762347|ref|XP_001963311.1| GF14006 [Drosophila ananassae]
gi|190617008|gb|EDV32532.1| GF14006 [Drosophila ananassae]
Length = 232
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 139/204 (68%), Gaps = 2/204 (0%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH +P T++VD QRRYVP RGDLV+G+V S+ GD Y
Sbjct: 25 RVILGPGLRRVDDTVVASKAGPLRHKEPNTFWVDNYQRRYVPARGDLVLGIVRSKAGDLY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG+ + A +SYLAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 85 RVDIGAPETASISYLAFESATKKNRPDLNPGDLIYARVLNASADIEPELVCVNSNGKRGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L DG+ S++L R LL CP+L + + + E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLPDGFFFKCSLNLGRVLLRENCPILAAITR--QLPYEIAVGVNGRIWVKAHSLRETV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESI 216
+ I++ E Y E +C+++
Sbjct: 203 ALAKAILALEQAGYAETDKVCDNL 226
>gi|313747523|ref|NP_001186445.1| exosome complex exonuclease RRP40 [Gallus gallus]
Length = 261
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 146/215 (67%), Gaps = 14/215 (6%)
Query: 6 LSLNAEPR--LILGPGLRRESSAILVSQSGILRHAKPFT---------YYVDYIQRRYVP 54
L +A PR L+ GPGLRR + +LV++ G+LRH + Y+VD Q+RYVP
Sbjct: 38 LGTSAAPRGRLLCGPGLRRCAGGLLVTKCGLLRHRRAGDGAAAAAGGAYWVDSQQKRYVP 97
Query: 55 TRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
+GD VIG+VT +VGD +R+D+G + A LSYLAFEGATK+N P V+ GD++ G+ L AN
Sbjct: 98 VKGDHVIGIVTGKVGDVFRLDVGGSEQASLSYLAFEGATKRNRPNVQVGDLIYGQFLVAN 157
Query: 115 KDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMEL 173
KDME EMVC+DS G+ MG++ DG+L S+ L RKLL PKC ++++L++ EL
Sbjct: 158 KDMEPEMVCIDSSGRASGMGVIGQDGFLFKVSLGLIRKLLAPKCEIIQELSQLY--PFEL 215
Query: 174 SIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
+GMNG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 216 VLGMNGRIWVKAKTVQQTLIIVNILEACEYMTAEQ 250
>gi|327278779|ref|XP_003224138.1| PREDICTED: exosome complex exonuclease RRP40-like [Anolis
carolinensis]
Length = 257
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 145/216 (67%), Gaps = 12/216 (5%)
Query: 3 GDTLSLNA----EPRLILGPGLRRESSAILVSQSGILRHAKPFT-----YYVDYIQRRYV 53
G+ L L A + RL+ GPGLRR +LV++ G+LR+ P + Y+VD QRRYV
Sbjct: 33 GERLRLAANGPQKGRLVCGPGLRRGGEGLLVTKCGLLRYRGPGSGSGGVYWVDSQQRRYV 92
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTA 113
P +GD VIG+VT++ GD ++VD+G + A LSYLAFEGATK+N P V+ GD++ G+ + A
Sbjct: 93 PVKGDHVIGIVTAKAGDIFKVDVGGSEQASLSYLAFEGATKRNRPNVQVGDLIYGQFIIA 152
Query: 114 NKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
NKDME EMVC+DS G+ MG++ DG+L S+ L RKLL P C +++ L + E
Sbjct: 153 NKDMEPEMVCIDSSGRANGMGVIGQDGFLFKVSLGLIRKLLAPDCEIIQDLGQLY--PFE 210
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
L +GMNG+IW++ ++ T+ V N++ +CE ++ E+
Sbjct: 211 LVLGMNGRIWVKAKTIQQTLIVANVLEACEHMTAEQ 246
>gi|147898568|ref|NP_001089320.1| exosome component 3 [Xenopus laevis]
gi|61401975|gb|AAH92022.1| MGC84934 protein [Xenopus laevis]
Length = 250
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 145/225 (64%), Gaps = 19/225 (8%)
Query: 1 MAGDTLSLNAEPR----------------LILGPGLRRESSAILVSQSGILRHAKPFTYY 44
+ GD L L A+PR ++ GPGL R+ +LV++ G+LRH P Y+
Sbjct: 15 LPGDVLVLPAQPRDAPLSLSGPSSTNRSRVVCGPGLMRQEDDLLVNKCGLLRHRDPAVYW 74
Query: 45 VDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGD 104
VD Q+RYVP +GD VIG+VT+R GD ++V++G + A LSYLAFEGATKKN P V+ GD
Sbjct: 75 VDSQQKRYVPVKGDHVIGIVTTRAGDIFKVEVGGSEQASLSYLAFEGATKKNRPNVKAGD 134
Query: 105 VVAGKLLTANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQL 163
+V G+ + ANKDME EM C+DS GK G++ DG + S+ L RKLL P+ ++++L
Sbjct: 135 LVYGQFIVANKDMEPEMACIDSSGKANGKGVIGQDGLMFKVSLGLVRKLLTPQNDIIQEL 194
Query: 164 AKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
S +E+ +GMNG+IW++ ++ T+ V NL+ +CE L+ E+
Sbjct: 195 M--SIFPLEVVVGMNGRIWVKAKTTQQTLIVANLLEACEYLTAEQ 237
>gi|321469195|gb|EFX80176.1| hypothetical protein DAPPUDRAFT_304185 [Daphnia pulex]
Length = 242
Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 149/220 (67%), Gaps = 9/220 (4%)
Query: 1 MAGDTLSLN-----AEPRLILGPGLRRESSAILVSQSGILR-HAKPFTYYVDYIQRRYVP 54
+ GD+++L+ + +++LGPGLR+ ILV++SG+LR A P TY++D +RYVP
Sbjct: 15 LPGDSVTLSKTDEISTVKIVLGPGLRKYGKQILVTKSGVLRTKASPATYWIDCHHKRYVP 74
Query: 55 TRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
RGD VIGVVT++VG++Y+V+IGS + A LS +AF GATKKN P ++ GD+V KLL A+
Sbjct: 75 ARGDDVIGVVTNKVGESYKVNIGSSEEASLSSIAFPGATKKNKPNIQIGDLVFAKLLIAS 134
Query: 115 KDMESEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMEL 173
DME E+VCV+S G+ +G+L+ G+L + RKLLNP+C LLK L K E+
Sbjct: 135 IDMEPELVCVNSLGENVGLGVLSTSGFLFTVPLHHIRKLLNPECTLLKSLGK--ALSFEI 192
Query: 174 SIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLC 213
++GMNGKIWI+ +S T+ + I E ++ EE+ LC
Sbjct: 193 AVGMNGKIWIKAKSVKQTIALARAISISEHMNKEEMNKLC 232
>gi|195350393|ref|XP_002041725.1| GM16829 [Drosophila sechellia]
gi|194123498|gb|EDW45541.1| GM16829 [Drosophila sechellia]
Length = 232
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 140/210 (66%), Gaps = 3/210 (1%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH +P T++VD QRRY+P RGDL++G+V ++ GD Y
Sbjct: 25 RVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIPARGDLILGIVRAKSGDMY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG+ D A +SYLAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 85 RVDIGAADTASISYLAFEAATKKNRPDLIPGDLIYARVLNASADIEPELVCVNSVGKRGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L +G+ S++L R LL CP+L L + E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLTEGFFFKCSLNLGRMLLRENCPVLAALTR--EMPYEIAVGVNGRIWVKAHSLKETV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
+ N I + E EI +C ++ FLQ
Sbjct: 203 ALANAISALEQSGCAEIDKICGNLG-DFLQ 231
>gi|291221134|ref|XP_002730573.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 233
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 138/197 (70%), Gaps = 2/197 (1%)
Query: 12 PRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
P+L LGPGLR + ++V + GILR +P ++VD Q+RYVP +G+ ++G+V S+ GD
Sbjct: 25 PKLRLGPGLRIDVDNVVVCKCGILRFREPSVFWVDTHQKRYVPVKGENILGIVISKAGDV 84
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
++VDIGS + A LSYLAFEGATK+N P V+ GD++ GKLL ANKDME E+VC+DS G+
Sbjct: 85 FKVDIGSSEMATLSYLAFEGATKRNRPNVQIGDLIYGKLLVANKDMEPEIVCIDSTGRSS 144
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
+G+++ G++ S+ L RK+++P C L+K L K E ++G+NG+IWI+ ++ S T
Sbjct: 145 GLGVISGGFMFKCSLGLVRKIVSPDCQLMKLLGK--HMPYETAVGLNGRIWIKAKTLSHT 202
Query: 192 VRVGNLIMSCELLSYEE 208
+ + N + E +S ++
Sbjct: 203 IAISNAVCCAEYMSKKQ 219
>gi|195470541|ref|XP_002087565.1| GE17692 [Drosophila yakuba]
gi|194173666|gb|EDW87277.1| GE17692 [Drosophila yakuba]
Length = 232
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 140/210 (66%), Gaps = 3/210 (1%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH +P T++VD QRRY+P RGDLV+G+V ++ GD Y
Sbjct: 25 RVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIPARGDLVLGIVRAKAGDLY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG+ D A +SYLAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 85 RVDIGAADTASISYLAFEAATKKNRPDLNPGDLIYARVLNASADIEPELVCVNSVGKRGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L +G+ S++L R LL CP+L L + E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLAEGFFFKCSLNLGRMLLRENCPVLGALTR--ELPYEIAVGVNGRIWLKAHSLKETV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
+ N I + E EI +C ++ FLQ
Sbjct: 203 ALANAISALEQSGCAEIDKICGNLG-DFLQ 231
>gi|291382949|ref|XP_002708010.1| PREDICTED: exosome component 3 [Oryctolagus cuniculus]
Length = 275
Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 141/203 (69%), Gaps = 9/203 (4%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPTRGDLVIGVVTS 66
R++ GPGLRR +LV++ G+LRH +P + Y+VD Q+RYVP +GD VIG+VT+
Sbjct: 64 RVVCGPGLRRSGDRLLVTKCGLLRHKEPSSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
+ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 127 RGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
G+ MG++ DG L ++ L RKLL P C +++++ K +E+ GMNG+IW++
Sbjct: 184 CGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIVFGMNGRIWVKA 241
Query: 186 ESFSDTVRVGNLIMSCELLSYEE 208
++ T+ + N++ +CE ++ ++
Sbjct: 242 KTIQQTLILANILEACEHMTADQ 264
>gi|24580923|ref|NP_722725.1| Rrp40 [Drosophila melanogaster]
gi|22945471|gb|AAN10459.1| Rrp40 [Drosophila melanogaster]
gi|72083300|gb|AAZ66314.1| RE44908p [Drosophila melanogaster]
gi|220952144|gb|ACL88615.1| CG31938-PA [synthetic construct]
Length = 232
Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 140/210 (66%), Gaps = 3/210 (1%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH +P T++VD QRRY+P RGDL++G+V ++ GD Y
Sbjct: 25 RVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIPARGDLILGIVRAKAGDLY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG+ D A +SYLAFE A+KKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 85 RVDIGATDTASISYLAFEAASKKNRPDLIPGDLIYARVLNASADIEPELVCVNSVGKSGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L DG+ S++L R LL CP+L L + E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLTDGFFFKCSLNLGRMLLRENCPVLAALTR--ELPYEIAVGVNGRIWLKAHSLKETV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
+ N I + E EI +C ++ FLQ
Sbjct: 203 ALANAISALEQSGCAEIDKICGNLG-DFLQ 231
>gi|195575819|ref|XP_002077774.1| GD23107 [Drosophila simulans]
gi|194189783|gb|EDX03359.1| GD23107 [Drosophila simulans]
Length = 232
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 135/201 (67%), Gaps = 2/201 (0%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH +P T++VD QRRY+P RGDL++G+V ++ GD Y
Sbjct: 25 RVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIPARGDLILGIVRAKSGDIY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG+ D A +SYLAFE ATKKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 85 RVDIGAADTASISYLAFEAATKKNRPDLIPGDLIYARVLNASADIEPELVCVNSVGKRGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L +G+ S++L R LL CP+L L + E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLTEGFFFKCSLNLGRMLLRENCPVLAALTR--EMPYEIAVGVNGRIWVKAHSLKETV 202
Query: 193 RVGNLIMSCELLSYEEILNLC 213
+ N I + E EI +C
Sbjct: 203 ALANAISALEQSGCAEIDKIC 223
>gi|344272149|ref|XP_003407898.1| PREDICTED: exosome complex component RRP40-like [Loxodonta
africana]
Length = 276
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 139/204 (68%), Gaps = 10/204 (4%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPF-------TYYVDYIQRRYVPTRGDLVIGVVT 65
R++ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD VIG+VT
Sbjct: 64 RVVCGPGLRRSGDRLLVTKCGRLRHKEPGGGGGGGGVYWVDSQQKRYVPVKGDHVIGIVT 123
Query: 66 SRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ L ANKDME EMVC+D
Sbjct: 124 AKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFLVANKDMEPEMVCID 183
Query: 126 SRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
S G+ MG++ DG L ++ L RKLL P C +++++ K +E+ GMNG+IW++
Sbjct: 184 SCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLY--PLEIVFGMNGRIWVK 241
Query: 185 CESFSDTVRVGNLIMSCELLSYEE 208
++ T+ + N++ +CE ++ ++
Sbjct: 242 AKTIQQTLILANILEACEHMTTDQ 265
>gi|355686795|gb|AER98189.1| exosome component 3 [Mustela putorius furo]
Length = 275
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 143/215 (66%), Gaps = 14/215 (6%)
Query: 6 LSLNA----EPRLILGPGLRRESSAILVSQSGILRHAKPF-------TYYVDYIQRRYVP 54
L LNA R++ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP
Sbjct: 53 LRLNAGTRSRGRVVCGPGLRRSGDRLLVTKCGRLRHKEPGGGSSGGGVYWVDSQQKRYVP 112
Query: 55 TRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
+GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + AN
Sbjct: 113 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVAN 172
Query: 115 KDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMEL 173
KDME EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+
Sbjct: 173 KDMEPEMVCIDSCGRASGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGKLY--PLEI 230
Query: 174 SIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 VFGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 265
>gi|417398222|gb|JAA46144.1| Putative exosome complex component rrp40-like protein [Desmodus
rotundus]
Length = 275
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 139/203 (68%), Gaps = 9/203 (4%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKP------FTYYVDYIQRRYVPTRGDLVIGVVTS 66
R++ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD VIG+VT+
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGGVYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
+ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 127 RGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
G+ MG++ DG L ++ L RKLL P C +L++L K +E+ GMNG+IW++
Sbjct: 184 CGRANGMGVIGQDGLLFKVTLGLIRKLLAPNCEILQELGKLY--PLEIVFGMNGRIWVKA 241
Query: 186 ESFSDTVRVGNLIMSCELLSYEE 208
++ T+ + N++ +CE ++ ++
Sbjct: 242 KTVQQTLILANVLEACEHMTADQ 264
>gi|355753186|gb|EHH57232.1| Exosome complex exonuclease RRP40 [Macaca fascicularis]
Length = 275
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD +RVD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFRVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|126334106|ref|XP_001371994.1| PREDICTED: exosome complex component RRP40-like [Monodelphis
domestica]
Length = 322
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 143/220 (65%), Gaps = 15/220 (6%)
Query: 2 AGDTLSLNA----EPRLILGPGLRRESSAILVSQSGILRHAKPF--------TYYVDYIQ 49
A TL L A R++ GPGLRR +LV++ G LRH +P Y+VD Q
Sbjct: 94 AEQTLRLGAVVRPRTRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGSGGGGVYWVDSQQ 153
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGK 109
+RYVP +GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+
Sbjct: 154 KRYVPVKGDHVIGIVTAKSGDLFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQ 213
Query: 110 LLTANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSR 168
+ ANKDME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K
Sbjct: 214 FVVANKDMEPEMVCIDSNGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEIGKLY- 272
Query: 169 QKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
+E+ GMNG+IW++ + T+ + N++ +CE ++ E+
Sbjct: 273 -PLEIVFGMNGRIWVKARTIQQTLILANVLEACEHMTTEQ 311
>gi|432961013|ref|XP_004086532.1| PREDICTED: exosome complex component RRP40-like [Oryzias latipes]
Length = 250
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 139/218 (63%), Gaps = 10/218 (4%)
Query: 5 TLSLNAEP-RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
+LS +A+P R + GPGLRR ++V +SG+LRH P T+++D Q+RYV T+G+ VIG+
Sbjct: 34 SLSESAKPERAVCGPGLRRSGDRLVVMKSGVLRHKPPLTFWIDSQQKRYVATKGETVIGI 93
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
VT+R GD +RVD G + A LSYLAFEGATK+N P V+ GD+V + L ANKDME E+VC
Sbjct: 94 VTARAGDTFRVDFGGSELASLSYLAFEGATKRNRPNVQVGDLVFAQFLIANKDMEPELVC 153
Query: 124 VDSRGKEFIMGILNDGYLL-HTSISLCRKLLNPKCPL---LKQLAKRSRQKMELSIGMNG 179
+D G+ MG G LL S+ L R+LL P + L+QL EL +GMNG
Sbjct: 154 IDGSGRANGMGAFGAGGLLIKVSLGLVRRLLAPNSDIRLDLEQLF-----PCELVVGMNG 208
Query: 180 KIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIH 217
++W+R S T+ V NL+ SC+ ++ ++ L +
Sbjct: 209 RVWVRASSVQQTLIVANLLQSCDTMTTQQRQQLFRRVQ 246
>gi|426220170|ref|XP_004004290.1| PREDICTED: exosome complex component RRP40 [Ovis aries]
Length = 275
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 144/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
L LNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LRLNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 264
>gi|78369404|ref|NP_001030474.1| exosome complex component RRP40 [Bos taurus]
gi|122140367|sp|Q3T0E1.1|EXOS3_BOVIN RecName: Full=Exosome complex component RRP40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40
gi|74267713|gb|AAI02437.1| Exosome component 3 [Bos taurus]
gi|296484653|tpg|DAA26768.1| TPA: exosome complex exonuclease RRP40 [Bos taurus]
Length = 275
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 144/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
L LNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LRLNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 264
>gi|395823863|ref|XP_003785196.1| PREDICTED: exosome complex component RRP40 [Otolemur garnettii]
Length = 277
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 140/205 (68%), Gaps = 11/205 (5%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPF--------TYYVDYIQRRYVPTRGDLVIGVV 64
R++ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD VIG+V
Sbjct: 64 RVVCGPGLRRSGDRLLVTKCGRLRHKEPSSGSGGGGGVYWVDSQQKRYVPVKGDHVIGIV 123
Query: 65 TSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV 124
T++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+
Sbjct: 124 TAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCI 183
Query: 125 DSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
DS G+ MG++ +DG L ++ L RKLL P C +++++ K +E+ GMNG+IW+
Sbjct: 184 DSCGRANGMGVIGHDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIVFGMNGRIWV 241
Query: 184 RCESFSDTVRVGNLIMSCELLSYEE 208
+ ++ T+ + N++ +CE ++ ++
Sbjct: 242 KAKTIQQTLILANILEACEHMTADQ 266
>gi|440897129|gb|ELR48894.1| Exosome complex exonuclease RRP40 [Bos grunniens mutus]
Length = 275
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 144/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
L LNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LRLNATARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 264
>gi|50511943|ref|NP_057126.2| exosome complex component RRP40 isoform 1 [Homo sapiens]
gi|14285758|sp|Q9NQT5.3|EXOS3_HUMAN RecName: Full=Exosome complex component RRP40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40; AltName: Full=p10
gi|8927588|gb|AAF82133.1|AF281132_1 exosome component Rrp40 [Homo sapiens]
gi|12803247|gb|AAH02437.1| Exosome component 3 [Homo sapiens]
gi|14250820|gb|AAH08880.1| Exosome component 3 [Homo sapiens]
gi|119578668|gb|EAW58264.1| exosome component 3 [Homo sapiens]
gi|123982070|gb|ABM82864.1| exosome component 3 [synthetic construct]
gi|123996899|gb|ABM86051.1| exosome component 3 [synthetic construct]
gi|158255164|dbj|BAF83553.1| unnamed protein product [Homo sapiens]
gi|261860530|dbj|BAI46787.1| exosome component 3 [synthetic construct]
Length = 275
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEP----RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|122920913|pdb|2NN6|G Chain G, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 289
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEP----RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 67 LSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 126
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 127 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 186
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 187 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 244
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 245 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 278
>gi|39930417|ref|NP_079789.1| exosome complex component RRP40 [Mus musculus]
gi|46577373|sp|Q7TQK4.3|EXOS3_MOUSE RecName: Full=Exosome complex component RRP40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40
gi|32484211|gb|AAH54085.1| Exosome component 3 [Mus musculus]
gi|54311132|gb|AAH23669.1| Exosome component 3 [Mus musculus]
gi|148670453|gb|EDL02400.1| exosome component 3, isoform CRA_a [Mus musculus]
Length = 274
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 142/211 (67%), Gaps = 10/211 (4%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKPF-----TYYVDYIQRRYVPTRGD 58
L+ A PRL + GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD
Sbjct: 55 LNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGD 114
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+V ++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME
Sbjct: 115 HVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDME 174
Query: 119 SEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM 177
EMVC+DS G+ MG++ DG L ++ L RKLL P C ++++L K +E+ GM
Sbjct: 175 PEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIVQELGKLY--PLEIVFGM 232
Query: 178 NGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
NG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 233 NGRIWVKAKTIQQTLILANVLEACEHMTTEQ 263
>gi|301758296|ref|XP_002914984.1| PREDICTED: exosome complex exonuclease RRP40-like [Ailuropoda
melanoleuca]
gi|281341275|gb|EFB16859.1| hypothetical protein PANDA_002935 [Ailuropoda melanoleuca]
Length = 275
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 143/214 (66%), Gaps = 13/214 (6%)
Query: 6 LSLNA----EPRLILGPGLRRESSAILVSQSGILRHAKPF------TYYVDYIQRRYVPT 55
L LNA R++ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP
Sbjct: 53 LRLNAGTRSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGGSSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRASGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 264
>gi|402896923|ref|XP_003911528.1| PREDICTED: exosome complex component RRP40 [Papio anubis]
Length = 275
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEMGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|114624600|ref|XP_520587.2| PREDICTED: exosome complex component RRP40 isoform 3 [Pan
troglodytes]
gi|332831948|ref|XP_003312140.1| PREDICTED: exosome complex component RRP40 [Pan troglodytes]
Length = 275
Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSEGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|426361817|ref|XP_004048094.1| PREDICTED: exosome complex component RRP40 isoform 1 [Gorilla
gorilla gorilla]
Length = 275
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEP----RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|403298618|ref|XP_003940110.1| PREDICTED: exosome complex component RRP40 [Saimiri boliviensis
boliviensis]
Length = 276
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 144/215 (66%), Gaps = 14/215 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPF-------TYYVDYIQRRYVP 54
LSLNA R +I GPGLRR +LV++ G LRH +P Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVICGPGLRRCGDRLLVTKCGRLRHKEPGGGGGGGGVYWVDSQQKRYVP 112
Query: 55 TRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + AN
Sbjct: 113 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVAN 172
Query: 115 KDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMEL 173
KDME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 KDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEI 230
Query: 174 SIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 VFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 265
>gi|297684004|ref|XP_002819647.1| PREDICTED: exosome complex component RRP40 [Pongo abelii]
Length = 275
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|57094135|ref|XP_538738.1| PREDICTED: exosome complex component RRP40 [Canis lupus familiaris]
Length = 275
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 139/203 (68%), Gaps = 9/203 (4%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPF------TYYVDYIQRRYVPTRGDLVIGVVTS 66
R++ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD VIG+VT+
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKEPGGGSGGGVYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
+ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQIGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 127 RGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
G+ MG++ DG L ++ L RKLL P C +L+++ K +E+ GMNG+IW++
Sbjct: 184 CGRASGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGKLY--PLEIVFGMNGRIWVKA 241
Query: 186 ESFSDTVRVGNLIMSCELLSYEE 208
++ T+ + N++ +CE ++ ++
Sbjct: 242 KTIQQTLILANILEACEHMTADQ 264
>gi|397466870|ref|XP_003805164.1| PREDICTED: exosome complex component RRP40 isoform 1 [Pan paniscus]
gi|343959608|dbj|BAK63661.1| exosome complex exonuclease RRP40 [Pan troglodytes]
gi|410221736|gb|JAA08087.1| exosome component 3 [Pan troglodytes]
gi|410262838|gb|JAA19385.1| exosome component 3 [Pan troglodytes]
gi|410289056|gb|JAA23128.1| exosome component 3 [Pan troglodytes]
Length = 275
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|296190341|ref|XP_002743149.1| PREDICTED: exosome complex component RRP40 isoform 1 [Callithrix
jacchus]
Length = 277
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 144/216 (66%), Gaps = 15/216 (6%)
Query: 6 LSLNAEP----RLILGPGLRRESSAILVSQSGILRHAKPF--------TYYVDYIQRRYV 53
LSLNA R+I GPGLRR +LV++ G LRH +P Y+VD Q+RYV
Sbjct: 53 LSLNAGACSRVRVICGPGLRRCGDRLLVTKCGRLRHKEPGGGGGGGGGVYWVDSQQKRYV 112
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTA 113
P +GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + A
Sbjct: 113 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVA 172
Query: 114 NKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
NKDME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E
Sbjct: 173 NKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLE 230
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
+ GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 IVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 266
>gi|332228355|ref|XP_003263357.1| PREDICTED: exosome complex component RRP40 isoform 1 [Nomascus
leucogenys]
gi|332228357|ref|XP_003263358.1| PREDICTED: exosome complex component RRP40 isoform 2 [Nomascus
leucogenys]
Length = 275
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARPRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|383872778|ref|NP_001244869.1| exosome component 3 [Macaca mulatta]
gi|380788587|gb|AFE66169.1| exosome complex component RRP40 isoform 1 [Macaca mulatta]
Length = 275
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>gi|12839296|dbj|BAB24501.1| unnamed protein product [Mus musculus]
Length = 243
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 142/211 (67%), Gaps = 10/211 (4%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKPF-----TYYVDYIQRRYVPTRGD 58
L+ A PRL + GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD
Sbjct: 24 LNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGD 83
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+V ++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME
Sbjct: 84 HVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDME 143
Query: 119 SEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM 177
EMVC+DS G+ MG++ DG L ++ L RKLL P C ++++L K +E+ GM
Sbjct: 144 PEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIVQELGKLY--PLEIVFGM 201
Query: 178 NGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
NG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 202 NGRIWVKAKTIQQTLILANVLEACEHMTTEQ 232
>gi|47212018|emb|CAF95424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 241
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 142/212 (66%), Gaps = 12/212 (5%)
Query: 4 DTLSLNAE---PRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+T+SL+A+ +L+ GPGLRR + V +SG+LRH +P +++D +RYVPTRGD V
Sbjct: 25 ETISLSAQVQPEKLVCGPGLRRSVDRLQVCKSGVLRHKEPNMFWIDSQHKRYVPTRGDAV 84
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
IGVVT++ GD ++VD+G + A LSYLAFEGATK+N P V+ GD+V +LL AN+DME E
Sbjct: 85 IGVVTAKTGDIFKVDVGGSEQASLSYLAFEGATKRNRPNVQVGDLVFAQLLVANRDMEPE 144
Query: 121 MVCVDSRGKEFIMGILNDGYLLHT-SISLCRKLLNPKCPL---LKQLAKRSRQKMELSIG 176
+VCVD G+ MG+ +G LL + S+ L R+LL P + L+QL EL +G
Sbjct: 145 LVCVDGSGRANGMGVFGEGGLLFSVSLGLVRRLLAPHSEIRSDLQQLV-----PCELLVG 199
Query: 177 MNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
+NG++W+R S T+ V NL+ SC+ ++ +
Sbjct: 200 LNGRVWVRSSSTQRTLVVANLLQSCDTMTAPQ 231
>gi|431909887|gb|ELK12989.1| Exosome complex exonuclease RRP40 [Pteropus alecto]
Length = 274
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 139/202 (68%), Gaps = 8/202 (3%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPF-----TYYVDYIQRRYVPTRGDLVIGVVTSR 67
R++ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD VIG+VT++
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKEPGGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAK 123
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS
Sbjct: 124 SGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSC 183
Query: 128 GKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
G+ MG++ DG L ++ L RKLL P C +++++ K +E+ GMNG+IW++ +
Sbjct: 184 GRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIVFGMNGRIWVKAK 241
Query: 187 SFSDTVRVGNLIMSCELLSYEE 208
+ T+ + N++ +CE ++ ++
Sbjct: 242 TVQQTLILANILEACEHMTADQ 263
>gi|149045812|gb|EDL98812.1| exosome component 3 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 281
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 142/216 (65%), Gaps = 15/216 (6%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKP----------FTYYVDYIQRRYV 53
L+ A PRL + GPGLRR +LV++ G LRH +P Y+VD Q+RYV
Sbjct: 57 LNAGARPRLRIVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGGGGGGVYWVDSQQKRYV 116
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTA 113
P +GD VIG+V ++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + A
Sbjct: 117 PVKGDHVIGIVVAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVA 176
Query: 114 NKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
NKDME EMVC+DS G+ MG++ DG L ++ L RKLL P C ++++L K +E
Sbjct: 177 NKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIVQELGKLY--PLE 234
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
+ GMNG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 235 IVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQ 270
>gi|442759049|gb|JAA71683.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp40
[Ixodes ricinus]
Length = 227
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 145/220 (65%), Gaps = 6/220 (2%)
Query: 1 MAGDTLSLNA--EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGD 58
+ GDT+ ++A + + +LGPGLR++ I+ +++GIL+ P TY+V+ Q+RYVP RGD
Sbjct: 8 LPGDTVDISASDKKKYVLGPGLRKDGERIIATRAGILKQRSPGTYWVEGRQKRYVPARGD 67
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+VT++ +N RV+IGS + LS AFEGATK+N P V+ GD+V ++LTAN+DME
Sbjct: 68 CVIGIVTAKSAENIRVNIGSSEQGSLSMFAFEGATKRNRPDVQVGDLVMAQVLTANRDME 127
Query: 119 SEMVCVDSRGKEFIMGILND--GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG 176
E+VCV+S GK+ I+G+L + + I L ++L CPLL L +R E+S+G
Sbjct: 128 PELVCVNSYGKKGILGVLRSPTAFWMRLPIDLVNRVLCKDCPLLGSLGRRI--PFEISLG 185
Query: 177 MNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
NG++W+ + +T+ V N I S E L+ +EI + C +
Sbjct: 186 QNGRVWVNANTLKNTLAVCNAIASAENLTAQEIKDRCAQL 225
>gi|338720163|ref|XP_001915160.2| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP40-like [Equus caballus]
Length = 275
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 9/206 (4%)
Query: 10 AEPRLILGPGLRRESSAILVSQSGILRHAKPF------TYYVDYIQRRYVPTRGDLVIGV 63
A R++ PGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD VIG+
Sbjct: 61 ARVRVVCXPGLRRCGDRLLVTKCGRLRHKEPGGGSGGGVYWVDSQQKRYVPVKGDHVIGI 120
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC
Sbjct: 121 VTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC 180
Query: 124 VDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
+DS G+ MG++ DG L ++ L RKLL P C +L++L K +E+ GMNG+IW
Sbjct: 181 IDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQELGKLY--PLEIVFGMNGRIW 238
Query: 183 IRCESFSDTVRVGNLIMSCELLSYEE 208
++ ++ T+ + N++ +CE ++ ++
Sbjct: 239 VKAKTIQQTLILANILEACEHMTADQ 264
>gi|410978639|ref|XP_003995697.1| PREDICTED: exosome complex component RRP40 [Felis catus]
Length = 276
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 10/210 (4%)
Query: 7 SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPF-------TYYVDYIQRRYVPTRGDL 59
+ A R++ GPGLRR +LV++ G LR+ +P Y+VD Q+RYVP +GD
Sbjct: 58 GVRARVRVVCGPGLRRCGDRLLVTKCGRLRYKEPGGGGGGGGVYWVDSQQKRYVPVKGDH 117
Query: 60 VIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME
Sbjct: 118 VIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEP 177
Query: 120 EMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN 178
EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+ GMN
Sbjct: 178 EMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGKLY--PLEIVFGMN 235
Query: 179 GKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
G+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 236 GRIWVKAKTIQQTLILANILEACEHMTADQ 265
>gi|194034051|ref|XP_001929041.1| PREDICTED: exosome complex component RRP40 [Sus scrofa]
Length = 275
Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 142/212 (66%), Gaps = 11/212 (5%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKPF------TYYVDYIQRRYVPTRG 57
L+ A PR+ + GPGLRR +LV++ G LRH + Y+VD Q+RYVP +G
Sbjct: 55 LNAGARPRVRVVCGPGLRRCGDRLLVTKCGRLRHKEAGGGGGSGVYWVDSQQKRYVPVKG 114
Query: 58 DLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDM 117
D VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDM
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQIGDLIYGQFVVANKDM 174
Query: 118 ESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG 176
E EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+ G
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLVRKLLAPNCEILQEVGKLY--PLEIVFG 232
Query: 177 MNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
MNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 233 MNGRIWVKAKTIQQTLILANVLEACEHMTADQ 264
>gi|348570290|ref|XP_003470930.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP40-like [Cavia porcellus]
Length = 275
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 139/203 (68%), Gaps = 9/203 (4%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPTRGDLVIGVVTS 66
R++ GPGLRR +LV++ G LRH + + Y+VD Q+RYVP +GD VIG+VT+
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKESGSGSSGGIYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
+ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 127 RGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
G+ MG++ DG L ++ L RKLL P C +++++ K +E+ GMNG+IW++
Sbjct: 184 CGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIVFGMNGRIWVKA 241
Query: 186 ESFSDTVRVGNLIMSCELLSYEE 208
++ T+ + N++ +CE ++ E+
Sbjct: 242 KTIQQTLILANILEACEHMTTEQ 264
>gi|444729441|gb|ELW69857.1| Exosome complex component RRP40 [Tupaia chinensis]
Length = 273
Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 140/201 (69%), Gaps = 7/201 (3%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFT----YYVDYIQRRYVPTRGDLVIGVVTSRV 68
R++ GPGLRR + +LV++ G LRH + + Y+VD Q+RYVP +GD VIG+VT++
Sbjct: 64 RVVCGPGLRRCGNRLLVTKCGRLRHKESGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKS 123
Query: 69 GDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG 128
GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS G
Sbjct: 124 GDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCG 183
Query: 129 KEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
+ MG++ DG L ++ L RKLL P C +++++ K +E+ GMNG+IW++ ++
Sbjct: 184 RANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLY--PLEIVFGMNGRIWVKAKT 241
Query: 188 FSDTVRVGNLIMSCELLSYEE 208
T+ + N++ +CE ++ ++
Sbjct: 242 IQQTLILANILEACEHMTTDQ 262
>gi|355567614|gb|EHH23955.1| Exosome complex exonuclease RRP40 [Macaca mulatta]
Length = 272
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 143/211 (67%), Gaps = 10/211 (4%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFTYY---VDYIQRRYVPTRGD 58
LSLNA R ++ GPGLRR +LV++ G LRH +P + VD Q+RYVP +GD
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGRVDSQQKRYVPVKGD 112
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+VT++ GD +RVD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANKDME
Sbjct: 113 HVIGIVTAKSGDIFRVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDME 172
Query: 119 SEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM 177
EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+ GM
Sbjct: 173 PEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIVFGM 230
Query: 178 NGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
NG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 NGRIWVKAKTIQQTLILANILEACEHMTSDQ 261
>gi|71480074|ref|NP_001025132.1| exosome complex exonuclease RRP40 [Danio rerio]
gi|68533623|gb|AAH98620.1| Zgc:112345 [Danio rerio]
Length = 247
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 133/197 (67%), Gaps = 3/197 (1%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
RLI GPGLRR + I V ++G+L+H +P Y+V+ QRRYVP +G+ VIG+VT++ GD +
Sbjct: 40 RLICGPGLRRSGAEIRVCRAGVLKHKQPNMYWVNCQQRRYVPAKGESVIGIVTAKSGDVF 99
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
+VD+G + A LSYLAFEGATK+N P V+ GD+V G+ ANKDME E+VC+DS G+
Sbjct: 100 KVDVGGSEQASLSYLAFEGATKRNRPNVQVGDLVFGQFTIANKDMEPELVCIDSCGRANG 159
Query: 133 MGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
MG+ DG L S+ L R+LL P+ L+ L K E+ +GMNG++W++ + T
Sbjct: 160 MGVFGGDGLLFKVSLGLVRRLLAPQSDLVSDLEKMF--PCEMVVGMNGRVWVKARTVQHT 217
Query: 192 VRVGNLIMSCELLSYEE 208
+ + NL+ +CE +S +
Sbjct: 218 LILSNLLEACENMSTAQ 234
>gi|4929673|gb|AAD34097.1|AF151860_1 CGI-102 protein [Homo sapiens]
Length = 220
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 137/202 (67%), Gaps = 9/202 (4%)
Query: 14 LILGPGLRRESSAILVSQSGILRHAKPF------TYYVDYIQRRYVPTRGDLVIGVVTSR 67
+ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD VIG+VT++
Sbjct: 10 FVCGPGLRRCGDRLLVTKCGRLRHKEPGSGGGGGVYWVDSQQKRYVPVKGDHVIGIVTAK 69
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS
Sbjct: 70 SGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSC 129
Query: 128 GKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
G+ MG++ DG L ++ L RKLL P C +++++ K +E+ GMNG+IW++ +
Sbjct: 130 GRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLY--PLEIVFGMNGRIWVKAK 187
Query: 187 SFSDTVRVGNLIMSCELLSYEE 208
+ T+ + N++ +CE ++ ++
Sbjct: 188 TIQQTLILANILEACEHMTSDQ 209
>gi|345308214|ref|XP_001511305.2| PREDICTED: exosome complex component RRP40-like [Ornithorhynchus
anatinus]
Length = 253
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 140/202 (69%), Gaps = 8/202 (3%)
Query: 13 RLILGPGLRRESSAILVSQSGILRH----AKPF-TYYVDYIQRRYVPTRGDLVIGVVTSR 67
R++ GPGLRR +LV++ G+LR A F Y+VD Q+RYVP +GD VIG+VT++
Sbjct: 43 RVLCGPGLRRTDCCLLVTKCGLLRRRPGGAAGFGMYWVDSSQKRYVPVKGDHVIGIVTAK 102
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
GD ++VDIG + A LSYLAFEGATK+N P V+ GD++ G+ + ANKDME E+ C+ S
Sbjct: 103 TGDLFKVDIGGSETASLSYLAFEGATKRNRPDVQVGDLIYGQFIVANKDMEPEIACISSG 162
Query: 128 GKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
GK MG++ DG L+ ++ L RKLL+P C ++++++K ME+ IGMNG+IW++ +
Sbjct: 163 GKGNGMGVIGQDGLLIKATLGLIRKLLSPSCEIIQEMSKLF--PMEIVIGMNGRIWVKAK 220
Query: 187 SFSDTVRVGNLIMSCELLSYEE 208
+ T+ + N++ +CE ++ ++
Sbjct: 221 TIQQTLILANILEACEFMTTDQ 242
>gi|351712427|gb|EHB15346.1| Exosome complex exonuclease RRP40 [Heterocephalus glaber]
Length = 274
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 143/214 (66%), Gaps = 13/214 (6%)
Query: 6 LSLNAE--PRL--ILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
L LNA PRL + GPGLRR +LV++ G RH + + Y+VD Q+RYVP
Sbjct: 52 LRLNAGMCPRLRVVCGPGLRRCGDRLLVTKCGRFRHKESGSGSSGGIYWVDSQQKRYVPV 111
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANK
Sbjct: 112 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANK 171
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 172 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLY--PLEIV 229
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 230 FGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 263
>gi|410931602|ref|XP_003979184.1| PREDICTED: exosome complex component RRP40-like [Takifugu rubripes]
Length = 257
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 140/214 (65%), Gaps = 12/214 (5%)
Query: 2 AGDTLSLNA--EP-RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGD 58
A DT+SL A +P +++ GPGL R + + V +SG+LRH +P +++D Q+RYVPT+GD
Sbjct: 36 AEDTISLTAHVQPEKVVCGPGLMRSADRLQVCKSGVLRHKEPNMFWMDSQQKRYVPTKGD 95
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+VTS+ GD ++VD+G + A LSYLAFEGATK+N P V+ GD+V + ANKDME
Sbjct: 96 AVIGIVTSKSGDIFKVDVGGSEQASLSYLAFEGATKRNRPNVQVGDLVFAHFIVANKDME 155
Query: 119 SEMVCVDSRGKEFIMGILNDGYLLHT-SISLCRKLLNPKCPL---LKQLAKRSRQKMELS 174
E+ C+D G+ MGI +G LL T S+ L R+LL P + L+QL EL
Sbjct: 156 PELACIDGSGRANGMGIFGEGGLLFTVSLGLVRRLLAPHSEIRSDLQQLV-----PCELL 210
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
+G+NG++W++ S T+ + NL+ C+ ++ +
Sbjct: 211 VGINGRVWLKSSSTQRTLIIANLLQCCDTMTAPQ 244
>gi|348511781|ref|XP_003443422.1| PREDICTED: exosome complex component RRP40-like [Oreochromis
niloticus]
Length = 244
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 137/229 (59%), Gaps = 14/229 (6%)
Query: 1 MAGDTLSLNAEPRLIL-----------GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQ 49
+ GD S AE ++ L GPGLRR ++V +SG+LRH +P +++D Q
Sbjct: 14 LPGDEFSFEAEEKISLTAPVKSEKVVCGPGLRRCGDRLVVFKSGVLRHKEPNVFWIDSQQ 73
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGK 109
RRYVP +G+ +IG+VT++ GD ++VD G + A LSYL FEGATK+N P V+ GD+V +
Sbjct: 74 RRYVPAKGESIIGIVTAKSGDVFKVDFGGSEQASLSYLTFEGATKRNRPNVQVGDLVFAQ 133
Query: 110 LLTANKDMESEMVCVDSRGKEFIMGILNDGYLL-HTSISLCRKLLNPKCPLLKQLAKRSR 168
L ANKDME E+VC+DS G+ MG+ G LL S+ L R+LL P + L +
Sbjct: 134 FLIANKDMEPELVCIDSSGRANGMGVFGAGGLLFRVSLGLVRRLLAPHSDIRSDLEQLF- 192
Query: 169 QKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIH 217
EL +GMNG+IW++ + T+ + NL+ S E ++ ++ L +
Sbjct: 193 -PCELVVGMNGRIWVKSATVQQTLIIANLLQSAETMTAQQRQQLFRKVQ 240
>gi|198424896|ref|XP_002124262.1| PREDICTED: similar to MGC84934 protein [Ciona intestinalis]
Length = 232
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 143/214 (66%), Gaps = 6/214 (2%)
Query: 7 SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
S+ + + LGPGL E+ + V + G+LRH P T++VD Q+RYVP+ D V+GVVTS
Sbjct: 23 SITGDSDVKLGPGLYHEADEVKVCKPGVLRHKTPDTFWVDCHQKRYVPS--DNVVGVVTS 80
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD- 125
R GD Y+VDIG+ AVL+Y++FEGA+K+N P V GD++ GKL+ ANKDME E+ CVD
Sbjct: 81 RQGDMYKVDIGASHLAVLNYMSFEGASKRNRPNVTNGDLIFGKLIVANKDMEPEVSCVDP 140
Query: 126 SRGKEFIMGILND-GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
+ GK +G+L+D G+ H ++L RKLL+P L+ +L +R E+++GMNG+I++
Sbjct: 141 NNGKANGLGVLSDRGFSFHVPLNLARKLLSPSFTLIHELG--ARITFEITVGMNGRIFLS 198
Query: 185 CESFSDTVRVGNLIMSCELLSYEEILNLCESIHI 218
C S + + ++I+S E LS E++ L + +
Sbjct: 199 CNSPKFVILIMDVILSAEYLSNEQMEKLLNEMFV 232
>gi|443730924|gb|ELU16219.1| hypothetical protein CAPTEDRAFT_131167 [Capitella teleta]
Length = 231
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 136/205 (66%), Gaps = 3/205 (1%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R++LGPGLR+E+ +L+++ G L P Y+VD +RY+P RG+ V+GVVT++ GD +
Sbjct: 22 RIVLGPGLRKETEHVLMTKPGKLCFKDPNIYWVDSHHKRYIPVRGENVLGVVTNKSGDTF 81
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
+VDIG + A LSYLAFEGATK+N P V+ GD V KLL A+K E E+VC+DS GK
Sbjct: 82 KVDIGGSEQASLSYLAFEGATKRNRPDVKIGDQVFCKLLVASKHTEPEVVCIDSSGKSNG 141
Query: 133 MGILNDGYL-LHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
+G++ DG + + T + RK+L+P C LLK L + E++IGMNGKIWI+ + +T
Sbjct: 142 LGVIRDGGMTITTPCNHIRKILSPDCVLLKTLG--NSLPYEIAIGMNGKIWIKGRTTKET 199
Query: 192 VRVGNLIMSCELLSYEEILNLCESI 216
+ + N I E ++ E+I +C +
Sbjct: 200 IALTNAIACAEYMNNEQISLMCRKL 224
>gi|221121750|ref|XP_002163201.1| PREDICTED: exosome complex component RRP40-like [Hydra
magnipapillata]
Length = 246
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 8/214 (3%)
Query: 9 NAEPRLILGPGLRRESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
+ E L GPGLR+E ++ ++GILR KP ++D Q+RYV +GD VIG++T+R
Sbjct: 29 STEGFLKFGPGLRQEGQDVVAFKAGILRMKKKPLFIWIDTNQKRYVAVKGDTVIGIITTR 88
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
D+Y+VDIGS PA L+ L FEGATK+N P ++ D+V KL+ ANKDME E+ C+D
Sbjct: 89 GADSYKVDIGSSQPAYLNNLLFEGATKRNKPNLKINDLVFAKLIVANKDMEPEISCIDEN 148
Query: 128 GKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
K +G LNDGY+ S+ L RKLL P C +L L K E+ +G+NG+IWI +
Sbjct: 149 NKSNNLGPLNDGYMFTVSLGLSRKLLQLPMCKVLSLLGKNF--PFEIVVGLNGRIWIHSK 206
Query: 187 SFSDTVRVGNLIMSCELLSYEEIL----NLCESI 216
DT+ + N I+S E + E+ L ESI
Sbjct: 207 GIIDTIAIANAIVSSEFMDDNEVTLMVKQLIESI 240
>gi|395514413|ref|XP_003761412.1| PREDICTED: exosome complex component RRP40 [Sarcophilus harrisii]
Length = 254
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 128/197 (64%), Gaps = 12/197 (6%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R++ GPGLRR Y+VD Q+RYVP +GD VIG+VT++ GD +
Sbjct: 58 RVVCGPGLRRCGDXXGGGGG---------VYWVDSQQKRYVPVKGDHVIGIVTAKSGDLF 108
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
+VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS G+
Sbjct: 109 KVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSSGRANG 168
Query: 133 MGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
MG++ DG L ++ L RKLL P+C +++++ K +E+ GMNG+IW++ + T
Sbjct: 169 MGVIGQDGLLFKVTLGLIRKLLAPECEIIQEIGK--LYPLEIVFGMNGRIWVKARTIQQT 226
Query: 192 VRVGNLIMSCELLSYEE 208
+ + N++ +CE ++ E+
Sbjct: 227 LILANVLEACEHMTTEQ 243
>gi|156369794|ref|XP_001628159.1| predicted protein [Nematostella vectensis]
gi|156215128|gb|EDO36096.1| predicted protein [Nematostella vectensis]
Length = 240
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 121/181 (66%), Gaps = 2/181 (1%)
Query: 7 SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
S N +L LGPGLR+E +L +SG+ RH P Y++D Q+RYVP + + VIG++++
Sbjct: 28 SQNPRMKLKLGPGLRQEGEQVLAYKSGVFRHRAPAVYWIDTNQKRYVPVKDERVIGIISN 87
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
R G++Y+VDIG+ +PA LS LAFEGATK+N P ++ GD+V +L ANKDME E+ C D
Sbjct: 88 RGGESYKVDIGTSNPATLSSLAFEGATKRNKPNLQIGDLVYCRLSIANKDMEPELDCTDG 147
Query: 127 RGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
GK +G L+ G++ + S+ L RKLLN LLK L K E ++G+NG++WI +
Sbjct: 148 SGKSTGLGPLSGGFMFNCSLGLTRKLLNKDFILLKLLGKYF--PFECTVGLNGRVWINAK 205
Query: 187 S 187
+
Sbjct: 206 T 206
>gi|354485357|ref|XP_003504850.1| PREDICTED: exosome complex component RRP40-like, partial
[Cricetulus griseus]
Length = 189
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 123/180 (68%), Gaps = 8/180 (4%)
Query: 35 LRHAKPF-----TYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAF 89
LRH +P Y+VD Q+RYVP +GD VIG+V ++ GD ++VD+G +PA LSYLAF
Sbjct: 1 LRHKEPGGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAF 60
Query: 90 EGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISL 148
EGATK+N P V+ GD++ G+ + ANKDME EMVC+DS G+ MG++ DG L ++ L
Sbjct: 61 EGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGL 120
Query: 149 CRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
RKLL P C ++++L K +E+ GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 121 IRKLLAPDCEIVQELGKLY--PLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTDQ 178
>gi|91089513|ref|XP_970464.1| PREDICTED: similar to AGAP010247-PA [Tribolium castaneum]
gi|270011388|gb|EFA07836.1| hypothetical protein TcasGA2_TC005405 [Tribolium castaneum]
Length = 221
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 131/203 (64%), Gaps = 3/203 (1%)
Query: 15 ILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRV 74
+LGPG+ + S + V+++G L P TY+V++ Q+RYVP RGDLV+G+V + GD ++
Sbjct: 20 VLGPGVAPDGSTVRVTRAGRLHAKPPNTYWVEHDQKRYVPKRGDLVVGIVVKKSGDLLKI 79
Query: 75 DIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMG 134
DIG +PA LS LAFEGATKK P ++ GD+V G+LL A+K+ME E+VCVDS K +G
Sbjct: 80 DIGGSEPASLSMLAFEGATKKQKPDLQVGDLVYGRLLNAHKEMEPELVCVDSYFKAGKLG 139
Query: 135 IL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVR 193
L N+G+L+ S+ L +LL + P+L+ + K + E+++GMNG++W+ S D +
Sbjct: 140 PLSNEGFLVTVSLGLVWRLLEAENPILEAVGKAA--PFEIAVGMNGRVWVNGRSVKDVLN 197
Query: 194 VGNLIMSCELLSYEEILNLCESI 216
V + E +L+ C+ +
Sbjct: 198 VVRCLEVAERHDDRTVLDFCKQL 220
>gi|384487112|gb|EIE79292.1| hypothetical protein RO3G_03997 [Rhizopus delemar RA 99-880]
Length = 228
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 133/210 (63%), Gaps = 4/210 (1%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFT-YYVDYIQRRYVPTRGDL 59
+ GD + +N E +ILGPGLR+E ++ +++GILRH + ++++ Q+RYV + G+
Sbjct: 9 LPGDAIPVNTESTVILGPGLRQEGDEVVATKAGILRHLESGNRWWIESNQKRYVASTGES 68
Query: 60 VIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
VIG V +++G+ +RVDIG+ AVL LAFEGATK+N P + +V ++ AN+DME+
Sbjct: 69 VIGTVIAKLGEYFRVDIGTAHAAVLPMLAFEGATKRNRPNLSVRSLVYCRVAMANRDMEA 128
Query: 120 EMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN 178
E+ CV+ + GK G L GY+ S+ LCR+LLNP P+L L + E ++GMN
Sbjct: 129 ELECVNPTTGKGDGFGELVGGYVFTGSLGLCRRLLNPNTPILTLLGEHF--PFETAVGMN 186
Query: 179 GKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
G+IW+ E + T+ + N I E LS EE
Sbjct: 187 GRIWVNSEEPNITILIANAIQHSEYLSEEE 216
>gi|326923196|ref|XP_003207825.1| PREDICTED: exosome complex exonuclease RRP40-like, partial
[Meleagris gallopavo]
Length = 153
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 108/147 (73%), Gaps = 3/147 (2%)
Query: 42 TYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVE 101
Y+VD Q+RYVP +GD VIG+VT +VGD +R+D+G + A LSYLAFEGATK+N P V+
Sbjct: 6 AYWVDSQQKRYVPVKGDHVIGIVTGKVGDVFRLDVGGSEQASLSYLAFEGATKRNRPNVQ 65
Query: 102 TGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLL 160
GD++ G+ L ANKDME EMVC+DS G+ MG++ DG+L S+ L RKLL PKC ++
Sbjct: 66 VGDLIYGQFLVANKDMEPEMVCIDSSGRASGMGVIGQDGFLFKVSLGLIRKLLAPKCEII 125
Query: 161 KQLAKRSRQKMELSIGMNGKIWIRCES 187
++L++ EL +GMNG+IW++ ++
Sbjct: 126 QELSQLY--PFELVLGMNGRIWVKAKT 150
>gi|449269330|gb|EMC80118.1| Exosome complex exonuclease RRP40, partial [Columba livia]
Length = 168
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 115/159 (72%), Gaps = 3/159 (1%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
+YVP +GD VIG+VT++ GD +++D+G + A LSYLAFEGATK+N P V+ GD++ G+
Sbjct: 1 QYVPVKGDHVIGIVTAKAGDLFKLDVGGSEQASLSYLAFEGATKRNRPNVQVGDLIYGQF 60
Query: 111 LTANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQ 169
L ANKDME EMVC+DS G+ MGI+ DG+L S+ L RKLL PKC ++++L++
Sbjct: 61 LVANKDMEPEMVCIDSSGRSSGMGIIGQDGFLFKVSLGLIRKLLAPKCEIIQELSQLY-- 118
Query: 170 KMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
EL +GMNG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 119 PFELVLGMNGRIWVKAKTVQQTLIIVNILEACEYMTAEQ 157
>gi|440802744|gb|ELR23673.1| exosome component 3, putative [Acanthamoeba castellanii str. Neff]
Length = 233
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 128/201 (63%), Gaps = 3/201 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
+G G+ + ++ ++ GILR +K +VD Q+RYVP D+V+GVV + +N +VD
Sbjct: 25 IGIGVIQNQENLIATKCGILR-SKGNHVWVDNRQKRYVPVMEDMVLGVVLEKHVENAKVD 83
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
+GS PAVL LAFEGAT+KN P ++ G VV +++ ANKDME E+VC + GK GI
Sbjct: 84 LGSAVPAVLPMLAFEGATRKNRPNLQVGTVVYARVVVANKDMEPELVCTAATGKAEGFGI 143
Query: 136 LNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVG 195
L GY++ S+SL R+LL+P C +L+++ K E+++G NG++W+ S T+ +
Sbjct: 144 LAGGYMVKCSLSLARQLLSPDCVVLQEIGK--SMPFEIAVGQNGRVWVHSNSSVQTMLIA 201
Query: 196 NLIMSCELLSYEEILNLCESI 216
N I++CE LS + ++ + +
Sbjct: 202 NAILNCEFLSPAQTRDMVQQL 222
>gi|320165398|gb|EFW42297.1| exosome component 3 [Capsaspora owczarzaki ATCC 30864]
Length = 275
Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 125/213 (58%), Gaps = 18/213 (8%)
Query: 13 RLILGPGLRRESS-AILVSQSGILR--------------HAKPFT-YYVDYIQRRYVPTR 56
RL LGPGL +E I S++G+L+ H+ Y+ Q+RYVP +
Sbjct: 54 RLRLGPGLAQEGGRVIAASRAGVLQGSMGAASTGTGANAHSSQVARLYIASSQKRYVPAK 113
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
+LV+G++T R+G+ ++VDIG+ A LS+LAFEGATK+N P + G +V GKL ANKD
Sbjct: 114 DELVVGIITDRMGEAFKVDIGAAASASLSFLAFEGATKRNRPNLAIGALVYGKLAVANKD 173
Query: 117 MESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG 176
ME EMVC+D+ K MG L GYL+H S L R+LL+ +L L K +E +IG
Sbjct: 174 MEPEMVCIDAADKAAGMGELTGGYLIHISSGLTRRLLSRDPAVLIALGKHF--ALETAIG 231
Query: 177 MNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
+NG+ WI ++ V + N I + E ++ +I
Sbjct: 232 LNGRTWINAQTPQQVVLIANAIQNSEFMTVAQI 264
>gi|167536294|ref|XP_001749819.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771746|gb|EDQ85408.1| predicted protein [Monosiga brevicollis MX1]
Length = 233
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 125/218 (57%), Gaps = 6/218 (2%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAI----LVSQSGILRHAKPFTYYVDYIQRRYVPTRGD 58
GD L +++LGPGL + S+ +V+ GILR T++VD GD
Sbjct: 13 GDRFPLPDSGKVVLGPGLTTQQSSHGSEGVVTHGGILRQKGEATFWVDIATHNPQTAEGD 72
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
V+G++ G+ + VDIG A+L LAFEGAT++N P++ GD+V +L AN+DM+
Sbjct: 73 QVLGIIIGNAGEGFLVDIGGASNALLPGLAFEGATRRNRPRLNPGDLVLARLKVANRDMD 132
Query: 119 SEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN 178
E+ CV S GK MG L G L S+ LCR+L C +L +L SR+K EL +GMN
Sbjct: 133 PELTCVTSGGKSAGMGHLEGGLLREISLGLCRRLRGKNCRVLTELG--SRKKFELCVGMN 190
Query: 179 GKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
G++W++ E+ D V + N I + EL+S +++ L I
Sbjct: 191 GRMWLKTEAPMDAVLLANAIEASELMSDKQVTKLVNRI 228
>gi|321468012|gb|EFX78999.1| hypothetical protein DAPPUDRAFT_319933 [Daphnia pulex]
Length = 188
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 113/166 (68%), Gaps = 3/166 (1%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAG 108
+ +YVP RGD VIGVVT++VG++Y+V+IGS + A LS +AF GATKKN P ++ GD+V
Sbjct: 15 EEKYVPARGDDVIGVVTNKVGESYKVNIGSSEEASLSSIAFPGATKKNKPNIQIGDLVFA 74
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRS 167
KLL A+ DME E+VCV+S G+ +G+L+ G+L + RKLLNP+C LLK L K
Sbjct: 75 KLLIASIDMEPELVCVNSLGENVGLGVLSTSGFLFTVPLHHIRKLLNPECTLLKSLGK-- 132
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLC 213
E+++GMNGKIWI+ +S T+ + I E ++ EE+ LC
Sbjct: 133 ALSFEIAVGMNGKIWIKAKSVKQTIALARAISISEHMNKEEMNKLC 178
>gi|356499851|ref|XP_003518749.1| PREDICTED: putative exosome complex component rrp40-like [Glycine
max]
Length = 240
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 7/207 (3%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ AI V ++G LR +KP Y+V+ Q+RYVP D V+G+V DN+ VD
Sbjct: 36 LGGGLRQDCDAISVMKAGRLRFSKPNKYWVENSQKRYVPHAEDSVLGIVVDSRSDNFLVD 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A L LAFEG T++N P+ E G ++ +++ AN M E+ C D+ GK G
Sbjct: 96 IKGPALAFLPVLAFEGGTRRNIPRFEIGTLIYARVVKANPGMNPELACTDASGKAAEFGA 155
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ + L R LL +P CP+L L K + E+++G+NG++W+ S T+ V
Sbjct: 156 LKDGYMFECTTGLSRMLLSSPTCPVLDALGK--KLSFEIAVGLNGRVWVSAASPQTTIVV 213
Query: 195 GNLIMSCELLSYEE----ILNLCESIH 217
N IM+ E LS + + L E IH
Sbjct: 214 ANAIMNSETLSGAQQRIMVEKLLERIH 240
>gi|115438997|ref|NP_001043778.1| Os01g0661400 [Oryza sativa Japonica Group]
gi|113533309|dbj|BAF05692.1| Os01g0661400 [Oryza sativa Japonica Group]
gi|215706438|dbj|BAG93294.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+RY+P+ D V+GVV DN+ VD
Sbjct: 35 LGAGLRQDCDTIQATSAGRLRLSKPSKYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ TS L R LL +P CP+L+ L K + E+++G+NG++W+ S S+ + V
Sbjct: 155 LKDGYMFDTSTGLSRMLLSSPTCPILEALGK--KLSFEIAVGLNGRVWVNAPSPSNVIVV 212
Query: 195 GNLIMSCELLS 205
N I+ E LS
Sbjct: 213 SNAIIKSESLS 223
>gi|225457023|ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 [Vitis
vinifera]
gi|297733775|emb|CBI15022.3| unnamed protein product [Vitis vinifera]
Length = 237
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GL ++ AI V+++G LR +KP Y+V+ Q+RYVP D V+G+V DN+ VD
Sbjct: 33 LGGGLHQDCDAITVTKAGRLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDSKADNFLVD 92
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A L LAFEG T++N PK E G ++ +++ AN M E+ C D+ GK G
Sbjct: 93 IKGPALAFLPVLAFEGGTRRNIPKFEAGTLLYVRVVKANTGMNPELSCTDASGKAAEFGP 152
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ +S L R LL +P CP+L+ L K + E+++G+NG++W+ S S + V
Sbjct: 153 LKDGYMFESSTGLSRMLLSSPTCPVLEALGK--KLSFEIAVGLNGRVWVNASSPSTVILV 210
Query: 195 GNLIMSCELLS 205
N IM+ E LS
Sbjct: 211 ANAIMNSESLS 221
>gi|449440676|ref|XP_004138110.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
sativus]
gi|449477413|ref|XP_004155016.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
sativus]
Length = 243
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 3/201 (1%)
Query: 6 LSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVT 65
LS A + LG GLR++ AI VS+ G LR +KP Y+V+ Q+RYVP D V+G+V
Sbjct: 26 LSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVL 85
Query: 66 SRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
DN+ VDI A L LAFEG T++N PK E G ++ +++ N M E+ C D
Sbjct: 86 DSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTD 145
Query: 126 SRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
+ GK G+L DGY+ S L R LL +P CP+L+ L K + E ++G+NG++W+
Sbjct: 146 ASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGK--KLSFETAVGLNGRVWVN 203
Query: 185 CESFSDTVRVGNLIMSCELLS 205
+S S + V N I++ E LS
Sbjct: 204 ADSPSTIIVVSNAILNSETLS 224
>gi|224119330|ref|XP_002318044.1| predicted protein [Populus trichocarpa]
gi|118482713|gb|ABK93275.1| unknown [Populus trichocarpa]
gi|222858717|gb|EEE96264.1| predicted protein [Populus trichocarpa]
Length = 242
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ AI V ++G LR +KP Y+V+ Q+RYVP D V+G+V DN+ +D
Sbjct: 36 LGSGLRQDCDAISVMKAGKLRFSKPNKYWVETSQKRYVPCAEDSVLGIVVDSKSDNFLID 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A L LAFEG T++N PK E G ++ +++ AN M E+ C D+ GK G
Sbjct: 96 IKGPALAFLPVLAFEGGTRRNIPKFEAGTLLYVRVVKANPGMNPELSCTDASGKAAEFGA 155
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ S L R LL +P CP+L+ L K + E+++G+NG++W+ S S + V
Sbjct: 156 LKDGYMFECSTGLSRMLLSSPTCPVLEALGK--KLSFEIAVGLNGRVWVNANSPSIVIIV 213
Query: 195 GNLIMSCELLS 205
N IM+ E LS
Sbjct: 214 ANAIMNSETLS 224
>gi|125528678|gb|EAY76792.1| hypothetical protein OsI_04749 [Oryza sativa Indica Group]
Length = 239
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+RY+P+ D V+GVV DN+ VD
Sbjct: 35 LGAGLRQDCDTIQTTSAGRLRLSKPNKYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ TS L R LL +P CP+L+ L K + E+++G+NG++W+ S S+ + V
Sbjct: 155 LKDGYMFDTSTGLSRMLLSSPTCPVLEALGK--KLSFEIAVGLNGRVWVNAPSPSNVIVV 212
Query: 195 GNLIMSCELLS 205
N I+ E LS
Sbjct: 213 SNAIIKSESLS 223
>gi|57899790|dbj|BAD87535.1| ALM beta-like [Oryza sativa Japonica Group]
gi|125572934|gb|EAZ14449.1| hypothetical protein OsJ_04370 [Oryza sativa Japonica Group]
gi|215768884|dbj|BAH01113.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+RY+P+ D V+GVV DN+ VD
Sbjct: 35 LGAGLRQDCDTIQATSAGRLRLSKPNKYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ TS L R LL +P CP+L+ L K + E+++G+NG++W+ S S+ + V
Sbjct: 155 LKDGYMFDTSTGLSRMLLSSPTCPVLEALGK--KLSFEIAVGLNGRVWVNAPSPSNVIVV 212
Query: 195 GNLIMSCELLS 205
N I+ E LS
Sbjct: 213 SNAIIKSESLS 223
>gi|148670454|gb|EDL02401.1| exosome component 3, isoform CRA_b [Mus musculus]
Length = 208
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 105/154 (68%), Gaps = 8/154 (5%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKP-----FTYYVDYIQRRYVPTRGD 58
L+ A PRL + GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD
Sbjct: 55 LNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGD 114
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+V ++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME
Sbjct: 115 HVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDME 174
Query: 119 SEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRK 151
EMVC+DS G+ MG++ DG L ++ L RK
Sbjct: 175 PEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRK 208
>gi|340378463|ref|XP_003387747.1| PREDICTED: hypothetical protein LOC100638557 [Amphimedon
queenslandica]
Length = 3258
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 129/218 (59%), Gaps = 13/218 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGL-----RRESSAILVSQSGILRHAK---PFTYYVDYIQRRY 52
+ GD + L + LGPG R E S++ V + GILR +++V+ +RY
Sbjct: 12 LPGDAIPLAVGNDIKLGPGTYSGGGREEGSSVFV-KPGILRRKDRDGSSSFWVNTQHKRY 70
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
VP+ G+ VIGVV R G YRVDIG+ A L LAFEGATK+N P V+ GD+V G L
Sbjct: 71 VPSEGEKVIGVVL-RTGRVYRVDIGASQNASLPELAFEGATKRNKPIVQVGDLVFGSLCQ 129
Query: 113 ANKDMESEMVCVDSRGKEFIMGILND-GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
A+ D E EM CVDS G+ MG+L G ++ ++SLCR+LL+ +C ++++L K K
Sbjct: 130 ADPDFEPEMTCVDSSGRASGMGLLKKPGCVISCTLSLCRRLLSKQCAVMEELQK--HYKF 187
Query: 172 ELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
E +G+NG++W+ + T+ + N I S E +S + I
Sbjct: 188 ECVVGLNGRVWLSAPTLMQTIIIRNCIKSSEFMSEDSI 225
>gi|242053885|ref|XP_002456088.1| hypothetical protein SORBIDRAFT_03g030230 [Sorghum bicolor]
gi|241928063|gb|EES01208.1| hypothetical protein SORBIDRAFT_03g030230 [Sorghum bicolor]
Length = 239
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR+E I + +G LR KP Y+++ Q+RY+P+ D V+G+V DN+ VD
Sbjct: 35 LGAGLRQECDTIQATSAGKLRLLKPNKYWIENSQKRYIPSVEDTVLGIVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDASGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ TS + R LL +P CP+L+ L K + E+++G+NG++W+ + S + V
Sbjct: 155 LKDGYMFDTSTGMSRMLLSSPTCPVLEALGK--KLSFEIAVGLNGRVWVNAPAASTVILV 212
Query: 195 GNLIMSCELLS 205
N IM E LS
Sbjct: 213 SNAIMRSESLS 223
>gi|391327223|ref|XP_003738104.1| PREDICTED: exosome complex component RRP40-like [Metaseiulus
occidentalis]
Length = 231
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 138/220 (62%), Gaps = 6/220 (2%)
Query: 1 MAGDTLSLNAEPR-LILGPGLRRESSAILVS-QSGILRHAKPFTYYVDYIQRRYVPTRGD 58
+ GD + +N + ++LGPGL +++ +V+ ++GIL P TY+++ ++Y P RGD
Sbjct: 10 VPGDRVEVNEKNSPVVLGPGLLQDNDNRVVALRAGILHFKSPRTYWLESHIKKYWPARGD 69
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG + + G+NYRV+I +PA LS +FEGATK+N P ++ G+++ ++L A+K ME
Sbjct: 70 CVIGCILQKAGENYRVNIWGPEPATLSPFSFEGATKRNKPNLKPGNLIYCQVLAAHKAME 129
Query: 119 SEMVCVDSRGKEFIMGIL--NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG 176
E+VC++S G++ G+L + L+ + + LL+ CPLL L + + + E++IG
Sbjct: 130 PEVVCINSYGRKGAFGVLESDTSNLITLPLEVIHLLLSKNCPLLTTLGR--KLQYEVAIG 187
Query: 177 MNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
NGK+W+ S +T+ + + + +C LS E+I +C+ I
Sbjct: 188 QNGKVWVNGNSVKNTLAICSALKACCKLSIEQIREMCQRI 227
>gi|350534412|ref|NP_001232949.1| uncharacterized protein LOC100575257 [Acyrthosiphon pisum]
gi|239799156|dbj|BAH70511.1| ACYPI56194 [Acyrthosiphon pisum]
Length = 236
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 121/202 (59%), Gaps = 3/202 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
+GPGL+ + I+V G+LR ++++Y +++Y+P + D+V+G+V ++ + Y+VD
Sbjct: 33 IGPGLKSVDNKIIVCNGGVLRCKDDKYFWIEYFKKKYIPAKDDVVVGIVAAKTSEMYKVD 92
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
IG+ + A L YLAF ATKKN P ++ G+VVA K+ A MESE+ CV+ I G
Sbjct: 93 IGASELATLPYLAFTNATKKNRPDIKVGNVVAAKIKMATPFMESEISCVE-YANSIIFGQ 151
Query: 136 LNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVG 195
L +G+L++ S++ +L LL QL + E+ IG NGKIWI S T+ +G
Sbjct: 152 LENGFLINVSLNYALRLRKSNSKLLYQLGQMV--PYEIVIGANGKIWIHSASIRTTIAIG 209
Query: 196 NLIMSCELLSYEEILNLCESIH 217
N I++ E L E+I L +S +
Sbjct: 210 NAILNAEHLEEEDIPQLVKSFN 231
>gi|414881126|tpg|DAA58257.1| TPA: exosome complex exonuclease RRP40 [Zea mays]
Length = 239
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR+E I + +G LR KP Y+++ Q+RY+P+ D V+G+V DN+ VD
Sbjct: 35 LGAGLRQECDTIQATSAGKLRQLKPNKYWIENSQKRYIPSVEDTVLGIVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L L+FEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLSFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ TS + R LL +P CP+L+ L K + E+++G+NG++W+ + S + V
Sbjct: 155 LKDGYMFDTSTGMSRMLLSSPTCPVLEVLGK--KLSFEIAVGLNGRVWVNAPAASTVILV 212
Query: 195 GNLIMSCELLS 205
N IM E LS
Sbjct: 213 SNAIMRSESLS 223
>gi|157817749|ref|NP_001101406.1| exosome complex exonuclease RRP40 [Rattus norvegicus]
gi|149045813|gb|EDL98813.1| exosome component 3 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 215
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 105/159 (66%), Gaps = 13/159 (8%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKP----------FTYYVDYIQRRYV 53
L+ A PRL + GPGLRR +LV++ G LRH +P Y+VD Q+RYV
Sbjct: 57 LNAGARPRLRIVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGGGGGGVYWVDSQQKRYV 116
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTA 113
P +GD VIG+V ++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + A
Sbjct: 117 PVKGDHVIGIVVAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVA 176
Query: 114 NKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRK 151
NKDME EMVC+DS G+ MG++ DG L ++ L RK
Sbjct: 177 NKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRK 215
>gi|255540683|ref|XP_002511406.1| Exosome complex exonuclease RRP40, putative [Ricinus communis]
gi|223550521|gb|EEF52008.1| Exosome complex exonuclease RRP40, putative [Ricinus communis]
Length = 234
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 121/210 (57%), Gaps = 7/210 (3%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ A+ V ++G LR +KP Y+V+ +RY+P D V+G+V +N+ VD
Sbjct: 8 LGGGLRQDCDAVTVIKAGKLRFSKPNKYWVESSHKRYMPCAEDSVLGIVVDSKAENFLVD 67
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A L LAFEG T++N PK E G ++ +++ AN M E+ C D+ GK G+
Sbjct: 68 IKGPAMAFLPVLAFEGGTRRNVPKFEAGTLLYVRVVKANPGMNPELSCTDASGKAVEFGV 127
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ S L R LL +P CP+L+ L K + E+++G+NG++W+ S S + V
Sbjct: 128 LKDGYMFECSTGLSRMLLSSPTCPVLEALGK--KLSFEIAVGINGRVWVNATSPSTIIVV 185
Query: 195 GNLIMSCELLSYEE----ILNLCESIHIRF 220
N IM+ E LS + + NL + I F
Sbjct: 186 ANAIMNSETLSAVQQKIMVDNLLDKIRSTF 215
>gi|195626980|gb|ACG35320.1| exosome complex exonuclease RRP40 [Zea mays]
Length = 239
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR+E I + +G LR KP Y+++ Q+RY+P+ D V+G+V DN+ VD
Sbjct: 35 LGAGLRQECDTIQATSAGKLRQLKPNKYWIENSQKRYIPSVEDTVLGIVVYTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L L+FEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLSFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ TS + R LL +P CP+L+ L K E+++G+NG++W+ + S + V
Sbjct: 155 LKDGYMFDTSTGMSRMLLSSPTCPVLEVLGK--XLSFEIAVGLNGRVWVNAPAASTVILV 212
Query: 195 GNLIMSCELLS 205
N IM E LS
Sbjct: 213 SNAIMRSESLS 223
>gi|328773742|gb|EGF83779.1| hypothetical protein BATDEDRAFT_29097 [Batrachochytrium
dendrobatidis JAM81]
Length = 234
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 124/204 (60%), Gaps = 3/204 (1%)
Query: 14 LILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
L LGPGL ++ I+ +SG + A ++ Q++Y+P G+ V+ VV+S+ ++YR
Sbjct: 23 LRLGPGLSQKQDTIVAIKSGFVTEASGNRLWLTASQKKYIPALGEPVLAVVSSKHMESYR 82
Query: 74 VDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGKEFI 132
VDIG PA L LAFEGATK+N P +E G +V ++ ANKDME E+ C++ S GK
Sbjct: 83 VDIGGPHPAALPVLAFEGATKRNKPNLEVGALVYARVSLANKDMEPEIECINPSSGKADG 142
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
G LNDG+++ S+ +CR L+ +L Q++ S E +IGMNG++WI E+ +
Sbjct: 143 FGELNDGFMIKCSLGMCRSLMAKNNTILAQIS--SLFPFETAIGMNGRVWINAETPKQII 200
Query: 193 RVGNLIMSCELLSYEEILNLCESI 216
+ NLI + + + ++L++ ++
Sbjct: 201 MIANLIRAADGAAPSKVLSMLKAF 224
>gi|268566653|ref|XP_002639778.1| C. briggsae CBR-EXOS-3 protein [Caenorhabditis briggsae]
Length = 226
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 124/206 (60%), Gaps = 4/206 (1%)
Query: 15 ILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRV 74
I+G G+ +V+Q G R + ++ +RY+P GD VI +VTS+ GD +R+
Sbjct: 20 IIGYGINLRGEKKVVTQPGAFRSDEG-KIWLSVHSKRYIPQEGDRVIAIVTSKTGDFFRL 78
Query: 75 DIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMG 134
DIG+ + A++S+ FEGATK+N P ++TGD++ + E+E+ CVD + MG
Sbjct: 79 DIGTAEYAMISFTNFEGATKRNRPNLKTGDIIYATVFDTTPRTEAELTCVDDEKRARGMG 138
Query: 135 ILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
LN GY+ S++ CR+L+NP C +L+ + K K E+++GMNG+IW+ + + +++
Sbjct: 139 QLNGGYMFKVSLNHCRRLINPSCEILQTMGKFF--KFEITVGMNGRIWVNAPTTEEIIKI 196
Query: 195 GNLIMSCELLSYE-EILNLCESIHIR 219
++I E ++ E E+++L + + R
Sbjct: 197 HDVINKSEFITGEDELISLVQHSYTR 222
>gi|341883788|gb|EGT39723.1| CBN-EXOS-3 protein [Caenorhabditis brenneri]
Length = 226
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 125/207 (60%), Gaps = 4/207 (1%)
Query: 14 LILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
LI G G+ + +Q G R+ +++ +RY+P GD VI +VTS+ GD +R
Sbjct: 19 LITGYGINLRGQQKVSTQPGAFRNDGG-KVWLNVHSKRYIPQEGDRVIAIVTSKTGDFFR 77
Query: 74 VDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIM 133
+DIG+ + A++++ FEGATK+N P ++TGD++ + E+E+ CVD + M
Sbjct: 78 LDIGTAEFAIINFTNFEGATKRNRPNLKTGDIIYATVFDTTPRTEAELTCVDDEKRARGM 137
Query: 134 GILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVR 193
G LN GY+ S++ CR+L+NP C +L+ + K K E+++GMNG+IWI + D ++
Sbjct: 138 GQLNGGYMFKVSLNHCRRLINPSCKILQTIGKFF--KFEITVGMNGRIWINAPTTDDIIK 195
Query: 194 VGNLIMSCELLS-YEEILNLCESIHIR 219
+ +++ E ++ +E+++L ++ + R
Sbjct: 196 IHDILNKSEFITDDDELISLVQNSYTR 222
>gi|401623722|gb|EJS41810.1| rrp40p [Saccharomyces arboricola H-6]
Length = 240
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 128/211 (60%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILR-----HAKPFTYYVDYIQRRYV 53
GD+L +N + LGPGL + S + +GIL + Y+DY +RYV
Sbjct: 6 FPGDSLPINPTVPIKLGPGLYCDPNSQEVRPVNTGILHVSTKGKSGVQAAYIDYSSKRYV 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ GD VIG +T D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVGDFVIGTITGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVYT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ CVDS G++ G+L DG ++ S++ R+LL N + PLLK LA + K
Sbjct: 126 AEKELEAEVECVDSTTGRDAGFGLLEDGIIIDVSLNFARQLLFNDEFPLLKVLA--AHAK 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIWI+CE S+++ I+ C
Sbjct: 184 FEIAIGLNGKIWIKCEELSNSLACYRTILEC 214
>gi|341883776|gb|EGT39711.1| hypothetical protein CAEBREN_17988 [Caenorhabditis brenneri]
Length = 226
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 124/207 (59%), Gaps = 4/207 (1%)
Query: 14 LILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
LI G G+ + +Q G R+ +++ +RY+P GD VI +VTS+ GD +R
Sbjct: 19 LITGYGINLRGQQKVSTQPGAFRNDGG-KVWLNVHSKRYIPQEGDRVIAIVTSKTGDFFR 77
Query: 74 VDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIM 133
+DIG+ + A++++ FEGATK+N P ++TGD++ + E+E+ CVD + M
Sbjct: 78 LDIGTAEFAIINFTNFEGATKRNRPNLKTGDIIYATVFDTTPRTEAELTCVDDEKRARGM 137
Query: 134 GILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVR 193
G LN GY+ S++ CR+L+NP C +L+ K K E+++GMNG+IWI + D ++
Sbjct: 138 GQLNGGYMFKVSLNHCRRLINPSCKILQTTGKFF--KFEITVGMNGRIWINAPTTDDIIK 195
Query: 194 VGNLIMSCELLS-YEEILNLCESIHIR 219
+ +++ E ++ +E+++L ++ + R
Sbjct: 196 IHDILNKSEFITDDDELISLVQNSYTR 222
>gi|357135800|ref|XP_003569496.1| PREDICTED: putative exosome complex component rrp40-like
[Brachypodium distachyon]
Length = 239
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 5/195 (2%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+RY+P+ D V+G+V DN+ VD
Sbjct: 35 LGAGLRQDYDTIQATSAGRLRLSKPNKYWVESSQKRYIPSVEDTVLGIVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L L+FEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNFAFLPVLSFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDASGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L +GY+ TS L R LL +P CPLL+ L K + E+++G+NG++W+ S S+ + V
Sbjct: 155 LKNGYMFDTSTGLSRMLLSSPTCPLLEALGK--KLSFEIAVGLNGRVWVNAPSPSNVIVV 212
Query: 195 GNLIMSCELLSYEEI 209
I+ E SY +I
Sbjct: 213 STAIIRSE--SYTQI 225
>gi|328865190|gb|EGG13576.1| Putative nuclease [Dictyostelium fasciculatum]
Length = 286
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 128/208 (61%), Gaps = 3/208 (1%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYY-VDYIQRRYVPTRGDLVI 61
GD + + ++ +GPGL + ++ S++G+LR +K +Y ++ Q+RYVP D+VI
Sbjct: 67 GDAIGQIDDLKVRIGPGLLQNKDQVVASKAGVLRFSKFHKFYWIENEQKRYVPQAEDMVI 126
Query: 62 GVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEM 121
G++ + ++++VDIGS PA+LS +FEGATK N P + G++V ++L ANKDME E+
Sbjct: 127 GIILEKHPESFKVDIGSSSPAMLSAYSFEGATKSNKPLLSIGNLVYCRVLVANKDMEPEL 186
Query: 122 VCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKI 181
VCV R K G L GY+ + S+ L LL+ C +LK + + E+++G+NG++
Sbjct: 187 VCVSIRNKAEGFGQLIGGYMFNCSLGLSHYLLSEDCSILKIVG--THIPYEIAVGVNGRV 244
Query: 182 WIRCESFSDTVRVGNLIMSCELLSYEEI 209
W+ S +T+ N I++ + + ++I
Sbjct: 245 WVNSASNQNTIITTNTILNSQYMPDDQI 272
>gi|384245743|gb|EIE19236.1| exonuclease component of the exosome [Coccomyxa subellipsoidea
C-169]
Length = 227
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 135/220 (61%), Gaps = 4/220 (1%)
Query: 3 GDTLS-LNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVI 61
GD ++ L + ++ +G GL + + + S++G+LR K +V+ Q+RY+ + GD V+
Sbjct: 8 GDVVAVLPEQGQVKVGAGLYADGTNLHTSRAGLLRQTKAGKLWVEGRQKRYISSTGDDVV 67
Query: 62 GVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEM 121
GVV R +N+ VDIG+ PAVL+ L+FEGAT++N PK+ GD+V +++ A++D+++E+
Sbjct: 68 GVVLERHAENFVVDIGAPFPAVLNILSFEGATRRNRPKLAEGDLVYARVVLAHRDIDTEL 127
Query: 122 VCVDSRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGK 180
C D+ GK G L +G+L+ S +L R+LL +P P+L+ L + + E++IG NG+
Sbjct: 128 SCTDTGGKASGYGPLKEGHLISCSTALARRLLASPTAPVLEALG--NSLQFEIAIGQNGR 185
Query: 181 IWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRF 220
+WI + + + N I E LS ++ L + + R
Sbjct: 186 VWIDAAKATTVILIANAITRSEYLSADQSKLLVQKLLARI 225
>gi|357487343|ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago truncatula]
gi|217074508|gb|ACJ85614.1| unknown [Medicago truncatula]
gi|355515294|gb|AES96917.1| Exosome complex exonuclease RRP40 [Medicago truncatula]
gi|388510130|gb|AFK43131.1| unknown [Medicago truncatula]
Length = 240
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 116/201 (57%), Gaps = 3/201 (1%)
Query: 6 LSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVT 65
LS + LG GLR++ I V ++G LR +KP Y+V+ Q+RYVP D V+G++
Sbjct: 26 LSTMTNQTIKLGGGLRQDGDVISVMKAGRLRFSKPNKYWVESSQKRYVPHAEDSVLGIIV 85
Query: 66 SRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
DN+ VDI A L LAFEG T++N PK E G ++ +++ A M E+ C D
Sbjct: 86 DSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGALIYVRVVKAIPGMNPELSCTD 145
Query: 126 SRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
+ GK G L +GY+ S L R LL+ P CP+L L K + E+++G+NG++W+
Sbjct: 146 ASGKAGEFGALKEGYMFECSTGLSRMLLSTPTCPVLDTLGK--KLSFEIAVGLNGRVWVN 203
Query: 185 CESFSDTVRVGNLIMSCELLS 205
S S T+ V N +++ E+LS
Sbjct: 204 ASSPSTTIIVANALINSEVLS 224
>gi|226491296|ref|NP_001148820.1| exosome complex exonuclease RRP40 [Zea mays]
gi|195622378|gb|ACG33019.1| exosome complex exonuclease RRP40 [Zea mays]
gi|238006308|gb|ACR34189.1| unknown [Zea mays]
gi|414881121|tpg|DAA58252.1| TPA: exosome complex exonuclease RRP40 [Zea mays]
Length = 239
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 112/191 (58%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR+E I + +G LR KP Y ++ Q+RY P+ D V+G+V DN+ VD
Sbjct: 35 LGAGLRQECDTIEATSAGKLRQLKPNKYCIENSQKRYKPSVEDTVLGIVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L L+FEG T++N PK + G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLSFEGGTRRNIPKFKIGTLIYARVVKANSIMNPELSCMDATGKAAKFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DGY+ TS + R LL +P CP+L+ L K + E+++G+NG++W+ + S + V
Sbjct: 155 LKDGYMFDTSTGMSRMLLSSPTCPVLEVLGK--KLSFEIAVGLNGRVWVNAPAASTVILV 212
Query: 195 GNLIMSCELLS 205
N IM E LS
Sbjct: 213 SNAIMRSESLS 223
>gi|281202144|gb|EFA76349.1| Putative nuclease [Polysphondylium pallidum PN500]
Length = 245
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 128/210 (60%), Gaps = 3/210 (1%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYY-VDYIQRRYVPTRGDL 59
+ GD + ++ ++ +GPGL + ++ S+ G+LR +K +Y ++ Q+R+VP D+
Sbjct: 10 LPGDCIGTISDLKVRIGPGLIQVKDTVIASKCGVLRFSKYHKFYWIENEQKRFVPQVEDM 69
Query: 60 VIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
VIG++ + ++++VDIGS A+LS +FEGATK N P ++ G++V ++L ANKDME
Sbjct: 70 VIGIIVDKHPESFKVDIGSSSLALLSAYSFEGATKNNKPLLQVGNLVYCRVLIANKDMEP 129
Query: 120 EMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG 179
E+VC+ R K G L +GY+ + S+ L LL+ C +LK L K E+++G+NG
Sbjct: 130 ELVCMSVRNKAEGYGQLVNGYMFNCSLGLSHYLLSEDCEILKILGKHI--AYEIAVGVNG 187
Query: 180 KIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
++W+ T+ V N I++ + + +I
Sbjct: 188 RVWVNSMDNQQTIIVANTILNSQYMHDNQI 217
>gi|66818409|ref|XP_642864.1| hypothetical protein DDB_G0276783 [Dictyostelium discoideum AX4]
gi|74876956|sp|Q7KWX9.1|EXOS3_DICDI RecName: Full=Putative exosome complex component rrp40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40
gi|60470923|gb|EAL68893.1| hypothetical protein DDB_G0276783 [Dictyostelium discoideum AX4]
Length = 237
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 127/208 (61%), Gaps = 3/208 (1%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYY-VDYIQRRYVPTRGDLVI 61
GD + + ++ +GPGL + +L +++G+LR++K +Y ++ Q+RYVP D+VI
Sbjct: 12 GDVIGKIGDLKVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQKRYVPQVEDMVI 71
Query: 62 GVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEM 121
G + + ++++VDIGS A+LS +FEGATK N P + G+++ ++ AN+DME E+
Sbjct: 72 GTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCRVTVANRDMEPEV 131
Query: 122 VCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKI 181
VC+ + K G L GY+L+ S+ L LL+ C LL+ L K E+++G+NG++
Sbjct: 132 VCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSEDCFLLQILGKHI--PYEIAVGVNGRV 189
Query: 182 WIRCESFSDTVRVGNLIMSCELLSYEEI 209
WI S +T+ V N I + + + ++I
Sbjct: 190 WINSGSNHNTIVVSNTIYNSQYIQDDQI 217
>gi|222618991|gb|EEE55123.1| hypothetical protein OsJ_02901 [Oryza sativa Japonica Group]
Length = 491
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 3/170 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+RY+P+ D V+GVV DN+ VD
Sbjct: 35 LGAGLRQDCDTIQATSAGRLRLSKPSKYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
L DGY+ TS L R LL+ P CP+L+ L K + E+++G+NG++W+
Sbjct: 155 LKDGYMFDTSTGLSRMLLSSPTCPILEALGK--KLSFEIAVGLNGRVWVE 202
>gi|290977236|ref|XP_002671344.1| predicted protein [Naegleria gruberi]
gi|284084912|gb|EFC38600.1| predicted protein [Naegleria gruberi]
Length = 253
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 126/204 (61%), Gaps = 12/204 (5%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVG-DNYRV 74
+G GL + S I+ +++G+LR P Y+V+ Q RYVP GD+VIGVV +V + Y V
Sbjct: 37 IGHGLLQLESNIIATKAGLLRFIPPNRYFVENNQHRYVPMVGDMVIGVVKDKVPVEQYSV 96
Query: 75 DIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG---KE 130
DI +H A+L ++ F+GAT++N P + G +V G++ ANKD++ E+ C S G K+
Sbjct: 97 DIFAHQGLALLPFIGFDGATRRNRPDLGPGSLVYGRVTLANKDLDLEITCESSPGMKKKD 156
Query: 131 F-----IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
+ + G L GY+ S+ + RKLL+P C LLK L++ E++IG+NG++WI
Sbjct: 157 WSTGKSVFGELKGGYVTECSLGMARKLLDPNCYLLKLLSEHV--SFEIAIGLNGRVWINS 214
Query: 186 ESFSDTVRVGNLIMSCELLSYEEI 209
E+ +D V + N I + E L+ +++
Sbjct: 215 EAPNDIVLICNAIQNSEHLTQDQV 238
>gi|145329617|ref|NP_001077958.1| exosome complex component RRP40 [Arabidopsis thaliana]
gi|330252600|gb|AEC07694.1| exosome complex component RRP40 [Arabidopsis thaliana]
Length = 213
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 111/191 (58%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR+++ I V ++G LR++KP Y+V+ +RYVP D V+G+V G+NY +D
Sbjct: 8 LGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCKGENYWID 67
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A+L LAFEGA ++N PK E ++ +++ N M E+ CVD GK G
Sbjct: 68 IKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESGKAAGFGP 127
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DG++ TS L R LL +P CP+L+ L K + E + G+NG+ W+ + + V
Sbjct: 128 LKDGFMFETSTGLSRMLLSSPTCPVLEALGK--KLSFETAFGLNGRCWVHAAAPRIVIIV 185
Query: 195 GNLIMSCELLS 205
N +M+ E LS
Sbjct: 186 ANALMNSETLS 196
>gi|18400806|ref|NP_565592.1| exosome complex component RRP40 [Arabidopsis thaliana]
gi|15010706|gb|AAK74012.1| At2g25350/F13B15.1 [Arabidopsis thaliana]
gi|20197753|gb|AAM15233.1| Expressed protein [Arabidopsis thaliana]
gi|20198061|gb|AAM15377.1| Expressed protein [Arabidopsis thaliana]
gi|23308267|gb|AAN18103.1| At2g25350/F13B15.1 [Arabidopsis thaliana]
gi|330252599|gb|AEC07693.1| exosome complex component RRP40 [Arabidopsis thaliana]
Length = 241
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 111/191 (58%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR+++ I V ++G LR++KP Y+V+ +RYVP D V+G+V G+NY +D
Sbjct: 36 LGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCKGENYWID 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A+L LAFEGA ++N PK E ++ +++ N M E+ CVD GK G
Sbjct: 96 IKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESGKAAGFGP 155
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DG++ TS L R LL +P CP+L+ L K + E + G+NG+ W+ + + V
Sbjct: 156 LKDGFMFETSTGLSRMLLSSPTCPVLEALGK--KLSFETAFGLNGRCWVHAAAPRIVIIV 213
Query: 195 GNLIMSCELLS 205
N +M+ E LS
Sbjct: 214 ANALMNSETLS 224
>gi|156841385|ref|XP_001644066.1| hypothetical protein Kpol_1014p28 [Vanderwaltozyma polyspora DSM
70294]
gi|156114700|gb|EDO16208.1| hypothetical protein Kpol_1014p28 [Vanderwaltozyma polyspora DSM
70294]
Length = 237
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 135/230 (58%), Gaps = 13/230 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGL--RRESSAILVSQSGILR---HAKPFTYYVDYIQRRYVPT 55
+ GD + ++A + LGPG+ ++ +L +G+L + + T YVDY +RY+P
Sbjct: 6 LPGDNVEVDAGKPVSLGPGMYCDPKTQMVLPVNAGVLNRTDNKRGQTLYVDYDSKRYIPA 65
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
GD VIGV+T D+YRV + S P LSY+AF A+KKN P ++ GD+V ++ ++
Sbjct: 66 TGDFVIGVITGAFADSYRVSLSSFSTPVSLSYMAFPNASKKNRPTLKIGDLVYARVCSSE 125
Query: 115 KDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKME 172
K++E+E+ C+DS G++ G+L++G + S+ R+LL N PLLK LAK ++ E
Sbjct: 126 KELEAEIECMDSTTGQDAGFGLLDEGMVAEVSLGFARQLLYNNDFPLLKLLAKHAQ--FE 183
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
++IG+NGKIW++ +T+ I+ C S ++I E + F Q
Sbjct: 184 IAIGLNGKIWLKSNDIKNTLACYKSILDC---SGKQIGEFNEIVKKNFNQ 230
>gi|330443719|ref|NP_014499.2| Rrp40p [Saccharomyces cerevisiae S288c]
gi|347595699|sp|Q08285.2|RRP40_YEAST RecName: Full=Exosome complex component RRP40; AltName:
Full=Ribosomal RNA-processing protein 40
gi|51013303|gb|AAT92945.1| YOL142W [Saccharomyces cerevisiae]
gi|329138968|tpg|DAA10643.2| TPA: Rrp40p [Saccharomyces cerevisiae S288c]
gi|349581031|dbj|GAA26189.1| K7_Rrp40p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296393|gb|EIW07495.1| Rrp40p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 240
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKP-----FTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 6 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++CE S+T+ IM C
Sbjct: 184 FEVAIGLNGKIWVKCEELSNTLACYRTIMEC 214
>gi|448262639|pdb|4IFD|G Chain G, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 242
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILR-----HAKPFTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 8 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 67
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 68 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 127
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K
Sbjct: 128 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 185
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++CE S+T+ IM C
Sbjct: 186 FEVAIGLNGKIWVKCEELSNTLACYRTIMEC 216
>gi|19114154|ref|NP_593242.1| exosome subunit Rrp40 (predicted) [Schizosaccharomyces pombe 972h-]
gi|74581918|sp|O13903.1|RRP40_SCHPO RecName: Full=Exosome complex component rrp40; AltName:
Full=Ribosomal RNA-processing protein 40
gi|2414605|emb|CAB16582.1| exosome subunit Rrp40 (predicted) [Schizosaccharomyces pombe]
Length = 240
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 8/207 (3%)
Query: 16 LGPGL----RRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
LGPGL + I+VS++G L +D +RY+P D VIG + SR +
Sbjct: 32 LGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKRYIPATNDQVIGQIISRFAEG 91
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGKE 130
YRVDIGS A L+ LAFE T+K+ P + G +V ++ A++DME E+ C D + GK
Sbjct: 92 YRVDIGSAHIAQLNALAFENVTRKSRPNLNVGSLVYARVSLADRDMEPELECFDATTGKA 151
Query: 131 FIMGILNDGYLLH-TSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFS 189
G L +GY++ S+S CRKL+ PK LL+ L S E+++GMNG++W+ E+ S
Sbjct: 152 AGYGELKNGYMITGLSLSHCRKLILPKNTLLQTLG--SYIPFEIAVGMNGRVWVNSENLS 209
Query: 190 DTVRVGNLIMSCELLSYEEILNLCESI 216
TV + I +CE +S EE + C+ +
Sbjct: 210 TTVLICTAIRNCEFMSDEEQIKYCKDL 236
>gi|151945494|gb|EDN63735.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190407211|gb|EDV10478.1| 3' -> 5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|207341466|gb|EDZ69514.1| YOL142Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270142|gb|EEU05372.1| Rrp40p [Saccharomyces cerevisiae JAY291]
gi|259149346|emb|CAY86150.1| Rrp40p [Saccharomyces cerevisiae EC1118]
gi|323335605|gb|EGA76888.1| Rrp40p [Saccharomyces cerevisiae Vin13]
gi|323346663|gb|EGA80947.1| Rrp40p [Saccharomyces cerevisiae Lalvin QA23]
Length = 240
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKP-----FTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 6 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++CE S+T+ IM C
Sbjct: 184 FEVAIGLNGKIWVKCEELSNTLACYRTIMEC 214
>gi|1420040|emb|CAA99163.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 240
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKP-----FTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 6 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ + + R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNFNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++CE S+T+ IM C
Sbjct: 184 FEVAIGLNGKIWVKCEELSNTLACYRTIMEC 214
>gi|393907691|gb|EJD74743.1| hypothetical protein LOAG_17979 [Loa loa]
Length = 245
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 128/218 (58%), Gaps = 14/218 (6%)
Query: 1 MAGDTLSLNAEPR---LILGPGLRR---ESSAILVSQSGILR--HAKPFTYYVDYIQRRY 52
+ GD LSL + I+G GL R +LV Q GI R H K ++ RRY
Sbjct: 6 LPGDILSLVVPGKGRTEIIGCGLERVINNPDQLLVVQPGIRRVSHGK---QWMAVHSRRY 62
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
VP +GD VIG+VTS G+ +++DIG+ D A +S+L+FEGAT++N P ++ GD++ + T
Sbjct: 63 VPQKGDFVIGIVTSVHGETFKIDIGAADIAFISFLSFEGATRRNRPNLKVGDLIYASVTT 122
Query: 113 ANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
A K +E E+ CVD G+ MG L + G+L TS++L R++L+P LL + K K
Sbjct: 123 ATKHLEPELTCVDGEGRARGMGPLPSGGFLFKTSLNLVRRILSPTSKLLSLIGKDI--KF 180
Query: 172 ELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
E++ G+NG+IWI+ + + + V +I E + +I
Sbjct: 181 EITSGINGRIWIKGINVVEVIAVYRIIKDSEFIPEPDI 218
>gi|323307346|gb|EGA60625.1| Rrp40p [Saccharomyces cerevisiae FostersO]
Length = 240
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKP-----FTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 6 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAYT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++CE S+T+ IM C
Sbjct: 184 FEVAIGLNGKIWVKCEELSNTLACYRTIMEC 214
>gi|308500147|ref|XP_003112259.1| CRE-EXOS-3 protein [Caenorhabditis remanei]
gi|308268740|gb|EFP12693.1| CRE-EXOS-3 protein [Caenorhabditis remanei]
Length = 271
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 123/212 (58%), Gaps = 19/212 (8%)
Query: 15 ILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRV 74
I+G G+ LV+Q G LR ++ ++ +RY+P GD VIG+VTS+ GD +R+
Sbjct: 51 IIGYGINLRGDKRLVTQPGALR-SEEGKVWLSVHSKRYIPQEGDRVIGIVTSKTGDFFRL 109
Query: 75 DIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMG 134
DIG+ + A++++ FEGATK+N P ++TGD++ + + E+E+ CVD + MG
Sbjct: 110 DIGTAEYAMINFTNFEGATKRNRPNLKTGDIIYATVFDSTPRTEAELTCVDDEKRARGMG 169
Query: 135 ILNDGYLLHTSI----------------SLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN 178
LN GY+ SI + CR+L++P C +L L + K E+++GMN
Sbjct: 170 QLNGGYMFKVSILKLDMDCYLYFVQVSLNHCRRLISPSCKILLTLG--NFFKFEITVGMN 227
Query: 179 GKIWIRCESFSDTVRVGNLIMSCELLSYEEIL 210
G+IWI + D +++ ++++ EL++ E+ L
Sbjct: 228 GRIWINASTTDDIIKIHDILVKSELVTDEDEL 259
>gi|323352278|gb|EGA84813.1| Rrp40p [Saccharomyces cerevisiae VL3]
Length = 226
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILR-----HAKPFTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 6 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++CE S+T+ IM C
Sbjct: 184 FEVAIGLNGKIWVKCEELSNTLACYRTIMEC 214
>gi|323331622|gb|EGA73036.1| Rrp40p [Saccharomyces cerevisiae AWRI796]
Length = 231
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILR-----HAKPFTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 6 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++CE S+T+ IM C
Sbjct: 184 FEVAIGLNGKIWVKCEELSNTLACYRTIMEC 214
>gi|297802814|ref|XP_002869291.1| hypothetical protein ARALYDRAFT_491516 [Arabidopsis lyrata subsp.
lyrata]
gi|297315127|gb|EFH45550.1| hypothetical protein ARALYDRAFT_491516 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GL +++ I ++G L KP Y+V+ +RY+P D V+G+V DN+ VD
Sbjct: 36 LGSGLHQDNDVISAMRAGKLSFCKPNKYWVESSHKRYIPRPEDHVLGIVVDSKTDNFWVD 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A+L LAFEG T++N PK E G ++ +++ N M E+ C D+ GK + G
Sbjct: 96 IKGPQLALLPVLAFEGGTQRNIPKFEVGTLLYLRVVKTNTGMNPELSCTDASGKAALFGP 155
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DG++L TS L R LL +P CP+++ L K + E+++G+NG++W+ + + V
Sbjct: 156 LRDGFMLETSTGLSRMLLSSPTCPVIEALGK--KLSFEIAVGLNGRVWVNSAAPRTVIIV 213
Query: 195 GNLIMSCELLSYEE 208
N +M+ E LS +
Sbjct: 214 ANAMMNSESLSVTQ 227
>gi|353244089|emb|CCA75543.1| related to RRP40-protein involved in ribosomal RNA processing,
component of the exosome complex [Piriformospora indica
DSM 11827]
Length = 230
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 119/195 (61%), Gaps = 8/195 (4%)
Query: 14 LILGPGL-----RRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRV 68
L LGPGL R ++I+ +++G L + YYV+ RRYVP + V+GVVT+R
Sbjct: 20 LKLGPGLYQQRDRDGQTSIIATRAGTLHKSGKNKYYVESNGRRYVPAAQEPVVGVVTARS 79
Query: 69 GDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG 128
G++YRVDIGS PA L LAFEGA+K+N P+++ G +V ++ ANKD+E E+ C D++
Sbjct: 80 GESYRVDIGSAHPATLDALAFEGASKRNRPQLKVGSLVYARVSLANKDLEPELECFDAQT 139
Query: 129 KEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
++ G L G ++ S+ L RKLL+P LL L ++ ++ +IG+NG+IW + +
Sbjct: 140 RKADGFGELKGGLVISCSLGLARKLLDPAHFLLPLLG--TKFALDAAIGVNGRIWFKTAT 197
Query: 188 FSDTVRVGNLIMSCE 202
T+ + I + +
Sbjct: 198 PKQTIAISRCIQAVD 212
>gi|323303100|gb|EGA56902.1| Rrp40p [Saccharomyces cerevisiae FostersB]
Length = 231
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILR-----HAKPFTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 6 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++ G+NGKIW++CE S+T+ IM C
Sbjct: 184 FEVAXGLNGKIWVKCEELSNTLACYRTIMEC 214
>gi|299743406|ref|XP_002910658.1| exosome complex exonuclease RRP40 [Coprinopsis cinerea
okayama7#130]
gi|298405639|gb|EFI27164.1| exosome complex exonuclease RRP40 [Coprinopsis cinerea
okayama7#130]
Length = 233
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 121/199 (60%), Gaps = 12/199 (6%)
Query: 14 LILGPGLRRES--------SAILVSQSGILRHAKPFT-YYVDYIQRRYVPTRGDLVIGVV 64
L LGPGL ++S + ++ +++G+L H+ + ++V+ RRYVP + VIGVV
Sbjct: 17 LKLGPGLLQQSNYTGESSETTVISTKAGVLNHSTNRSKWWVEGNSRRYVPAPQESVIGVV 76
Query: 65 TSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV 124
T R+G+ YRVDIGS A L LAFEGATK+N P ++ G ++ ++ A+KDME E+ C
Sbjct: 77 TQRLGEGYRVDIGSAHQASLDALAFEGATKRNKPNLKVGSLIYARVSLAHKDMEPELECF 136
Query: 125 DSRGKEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
D++ ++ G L G+++ S+ LCR LL+P+ L L +R +E +IGMNG++WI
Sbjct: 137 DAQTRKAEGFGELKGGFMIKCSLKLCRDLLDPRHFLFPLLG--ARFPLESAIGMNGRVWI 194
Query: 184 RCESFSDTVRVGNLIMSCE 202
+ T+ + I + +
Sbjct: 195 STKDVKHTIAIARCIEAVD 213
>gi|17507825|ref|NP_492751.1| Protein EXOS-3 [Caenorhabditis elegans]
gi|3877902|emb|CAB01875.1| Protein EXOS-3 [Caenorhabditis elegans]
Length = 226
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 123/206 (59%), Gaps = 4/206 (1%)
Query: 15 ILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRV 74
I+G G+ + +Q G H +++ +RY+P GD VI +VTS+ GD +R+
Sbjct: 20 IIGYGISVRGQTRIATQPGAF-HNDDGKVWLNVHSKRYIPQEGDRVIAIVTSKTGDFFRL 78
Query: 75 DIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMG 134
DIG+ + A++++ FEGATK+N P ++TGD++ + E+E+ CVD + MG
Sbjct: 79 DIGTAEYAMINFTNFEGATKRNRPNLKTGDIIYATVFDTTPRTEAELTCVDDEKRARGMG 138
Query: 135 ILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
LN G++ S++ CR+L+NP C +L+ + K K E+++GMNG+IWI + D +++
Sbjct: 139 QLNGGFMFKVSLNHCRRLINPSCKILQTVGKFF--KFEITVGMNGRIWISASTSDDIIKI 196
Query: 195 GNLIMSCELLSYE-EILNLCESIHIR 219
++I E ++ E E++ L ++ + R
Sbjct: 197 HDIINKSEFITDEDELITLVQNNYTR 222
>gi|365758515|gb|EHN00352.1| Rrp40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 240
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 130/236 (55%), Gaps = 24/236 (10%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKP-----FTYYVDYIQRRYV 53
GD L ++ + LGPG+ + S + +GIL + Y+DY +RYV
Sbjct: 6 FPGDKLPVDPTVPIKLGPGIYCDPISQEVRPVNTGILHVSTKGKGGVQAAYIDYFSKRYV 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIG ++ D+Y+V + P+V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGTISGTFSDSYKVSLQDFSPSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ G L DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGQLEDGTIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC------------ELLSYEEILNLCE 214
E++IG+NGKIW++C+ S+T+ I C +EE+LN+ E
Sbjct: 184 FEVAIGLNGKIWVKCKEVSNTLACYRTIKECCEKNDPATFKDIAKKQFEEVLNVNE 239
>gi|401838483|gb|EJT42098.1| RRP40-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 240
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 130/236 (55%), Gaps = 24/236 (10%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKP-----FTYYVDYIQRRYV 53
GD L ++ + LGPG+ + S + +GIL + Y+DY +RYV
Sbjct: 6 FPGDKLPVDPTVPIKLGPGIYCDPISQEVRPVNTGILHVSTKGKGGVQAAYIDYFSKRYV 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIG ++ D+Y+V + P+V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGTISGTFSDSYKVSLQDFSPSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ G L DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGQLEDGTIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC------------ELLSYEEILNLCE 214
E++IG+NGKIW++C+ S+T+ I C +EE+LN+ E
Sbjct: 184 FEVAIGLNGKIWVKCKEVSNTLACYRTIKECCEKNDTATFKDIAKKQFEEVLNVNE 239
>gi|218188791|gb|EEC71218.1| hypothetical protein OsI_03146 [Oryza sativa Indica Group]
Length = 550
Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+RY+P+ D V+GVV DN+ VD
Sbjct: 35 LGAGLRQDCDTIQATSAGRLRLSKPSKYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKI---WIRCESF 188
L DGY+ TS L R LL +P CP+L+ L K + E+++G+NG++ W R +
Sbjct: 155 LKDGYMFDTSTGLSRMLLSSPTCPVLEALGK--KLSFEIAVGLNGRVIFEWHRATKY 209
>gi|213409329|ref|XP_002175435.1| exosome complex exonuclease RRP40 [Schizosaccharomyces japonicus
yFS275]
gi|212003482|gb|EEB09142.1| exosome complex exonuclease RRP40 [Schizosaccharomyces japonicus
yFS275]
Length = 235
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 116/209 (55%), Gaps = 8/209 (3%)
Query: 14 LILGPGLRRESSA----ILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVG 69
L LGPGL ++ I +++G+L A T+Y D+ Q+RY+P+ D V+G + SR
Sbjct: 25 LRLGPGLVYRNNGTEERICATRAGVLCTAPKHTFYQDFRQKRYIPSLNDHVVGQIVSRNA 84
Query: 70 DNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRG 128
D YRVDIGS A L+ LAFE T+K+ P + G +V ++ A+KDME E+ CVD + G
Sbjct: 85 DGYRVDIGSAHSAQLNGLAFENVTRKSKPNLAVGSLVYARVSLADKDMEPELECVDATSG 144
Query: 129 KEFIMGILNDGYLLHT-SISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
K G L GYL+ S+S R LL LL + + E+++G+NG+IW+ S
Sbjct: 145 KAAGFGELKGGYLIQNISLSHVRSLLQSSNVLLSSIG--THIPFEIALGLNGRIWVNSGS 202
Query: 188 FSDTVRVGNLIMSCELLSYEEILNLCESI 216
TV + N I E S EE L +I
Sbjct: 203 IQTTVAIANAIKQSEYKSPEECTELIHAI 231
>gi|307105285|gb|EFN53535.1| hypothetical protein CHLNCDRAFT_59733 [Chlorella variabilis]
Length = 257
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 127/217 (58%), Gaps = 5/217 (2%)
Query: 3 GDTLSLNAEPRLI-LGPGLRRESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLV 60
GD L E ++ +G G++++ ++ +++G+LR AK +V+ Q+RY P+ D+V
Sbjct: 17 GDVLMALPETGVVRIGGGVQQDGELLVATKAGVLRREAKGGKLWVEARQKRYTPSPEDVV 76
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
IG +T R +NY VDIG A+L LAFEGATK+N P ++ GD+V G++ +A++D+E
Sbjct: 77 IGRITDRHSENYGVDIGGPFRALLPVLAFEGATKRNRPHLQVGDLVYGRVESAHRDLEPV 136
Query: 121 MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNG 179
+ C+D GK L G ++ S + R LL+ P LL L RS Q EL++G+NG
Sbjct: 137 LSCMDGAGKASGFAQLKGGMVIEVSTTHARSLLSRPPAALLSALG-RSLQ-FELAVGLNG 194
Query: 180 KIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
++W+ S S + V N I S E L+ + L ++
Sbjct: 195 RVWLDAPSSSTVILVANAIQSSEFLTAAQQEQLVAAL 231
>gi|145361214|ref|NP_680755.2| PNAS-3 related protein [Arabidopsis thaliana]
gi|63147368|gb|AAY34157.1| At4g32175 [Arabidopsis thaliana]
gi|111074296|gb|ABH04521.1| At4g32175 [Arabidopsis thaliana]
gi|332660614|gb|AEE86014.1| PNAS-3 related protein [Arabidopsis thaliana]
Length = 241
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 112/191 (58%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GL +++ AI ++G L ++KP Y+++ +RY+P D V+G+V DN+ VD
Sbjct: 36 LGSGLLQDNDAISAMRAGKLSYSKPNKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVD 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A+L LAFEG T++N PK E G ++ +++ N M E+ C ++ GK + G
Sbjct: 96 IKGPQLALLPVLAFEGGTRRNIPKFEVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGP 155
Query: 136 LNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DG++ TS L R LLN P P+++ L K + E+++G+NG++W+ + + V
Sbjct: 156 LRDGFMFETSTGLSRMLLNSPTRPVIEALGK--KLSFEIAVGLNGRVWVNATAPRIVIIV 213
Query: 195 GNLIMSCELLS 205
N IM+ E LS
Sbjct: 214 ANAIMNSESLS 224
>gi|367008036|ref|XP_003688747.1| exosome complex component RRP40 [Tetrapisispora phaffii CBS 4417]
gi|357527057|emb|CCE66313.1| hypothetical protein TPHA_0P01550 [Tetrapisispora phaffii CBS 4417]
Length = 237
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 13/228 (5%)
Query: 3 GDTLSLNAEPRLILGPGLRRE--SSAILVSQSGIL---RHAKPFTYYVDYIQRRYVPTRG 57
GD L+ LGPG+ + + + V +G+L + T YVDY +RY+P G
Sbjct: 8 GDDFQLDLTKETALGPGMYYDPKTQRVAVVAAGMLNVVETKRGQTVYVDYNTKRYIPAVG 67
Query: 58 DLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
D VIG +T GD Y+V + + +V LSY+AF A+KKN P ++ GD+ ++ +A K+
Sbjct: 68 DFVIGTITGAYGDRYKVSLSNFSNSVSLSYMAFPNASKKNRPTLKVGDLAYARICSAEKE 127
Query: 117 MESEMVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELS 174
+E+E+ C+DS G + G L +G ++ T + R+LL + PLL+ LAK + K E++
Sbjct: 128 LEAEIECMDSSTGVDSGFGSLENGMVIETKLPFARRLLFDNDFPLLQLLAKHT--KFEIA 185
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
IG+NG +W++C +T+ I+ C+ E+ N+ I + F Q
Sbjct: 186 IGLNGVVWVKCAEVKNTLACYRSILDCQNAKIEQYKNI---IKMHFEQ 230
>gi|62320889|dbj|BAD93872.1| hypothetical protein [Arabidopsis thaliana]
Length = 241
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 3/191 (1%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GL +++ AI +G L ++KP Y+++ +RY+P D V+G+V DN+ VD
Sbjct: 36 LGSGLLQDNDAISAMGAGKLSYSKPNKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVD 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A+L LAFEG T++N PK E G ++ +++ N M E+ C ++ GK + G
Sbjct: 96 IKGPQLALLPVLAFEGGTRRNIPKFEVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGP 155
Query: 136 LNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DG++ TS L R LLN P P+++ L K + E+++G+NG++W+ + + V
Sbjct: 156 LRDGFMFETSTGLSRMLLNSPTRPVIEALGK--KLSFEIAVGLNGRVWVNATAPRIVIIV 213
Query: 195 GNLIMSCELLS 205
N IM+ E LS
Sbjct: 214 ANAIMNSESLS 224
>gi|392566536|gb|EIW59712.1| exosome complex exonuclease RRP40 [Trametes versicolor FP-101664
SS1]
Length = 230
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 121/196 (61%), Gaps = 9/196 (4%)
Query: 14 LILGPGLRRESS-----AILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL + SS AI+ +++G ++ + K ++++ RRY+P + V+GVV SR
Sbjct: 17 LKLGPGLLQSSSTQGQAAIVSTRAGKVMNNPKGNKWWIEGNSRRYIPAPQESVVGVVISR 76
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
G+N+RVDIGS A L LAFEGATK+N P ++ G ++ ++ A+KDME E+ C D++
Sbjct: 77 SGENWRVDIGSAHMASLDGLAFEGATKRNRPNLKVGSLLYARVSLAHKDMEPELECFDAQ 136
Query: 128 GKEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
++ G L G+++ S+ +CR LL+PK L L +R +E ++G+NG++W+ C+
Sbjct: 137 TRKAEGFGELKGGFMVQCSLKMCRLLLDPKHFLFPLLG--ARFPLETAVGINGRVWVNCK 194
Query: 187 SFSDTVRVGNLIMSCE 202
T+ V I + +
Sbjct: 195 DPRQTIAVARCIEAVD 210
>gi|170574747|ref|XP_001892945.1| exosome complex exonuclease RRP40 [Brugia malayi]
gi|158601257|gb|EDP38216.1| exosome complex exonuclease RRP40, putative [Brugia malayi]
Length = 244
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 131/218 (60%), Gaps = 14/218 (6%)
Query: 1 MAGDTLSL--NAEPRL-ILGPGLRR---ESSAILVSQSGILR--HAKPFTYYVDYIQRRY 52
+ GD +SL E R I+G GL R +LV Q GI R H K ++ RRY
Sbjct: 6 LPGDIVSLVVPGEKRTEIIGCGLERVINNPDQLLVVQPGIRRVSHGK---QWMAVHSRRY 62
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
+P +GD VIG+VTS G+ +++DIGS D A +S+L+FEGAT++N P ++ GD++ + T
Sbjct: 63 IPQKGDRVIGIVTSTHGETFKIDIGSADIAFISFLSFEGATRRNRPNLKVGDLIYASVTT 122
Query: 113 ANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
A K +E E+ C+DS G+ MG+L + G+L TS++L R++L+P LL + K K
Sbjct: 123 ATKHLEPELTCIDSEGRARGMGLLPSGGFLFKTSLNLVRRILSPSSRLLSLIGKDI--KF 180
Query: 172 ELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
E++ GMNG+IWI+ + + + V +I E + +I
Sbjct: 181 EITSGMNGRIWIKGINVVEIIAVCRIIKESEFIPESDI 218
>gi|406602832|emb|CCH45608.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 232
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 128/217 (58%), Gaps = 11/217 (5%)
Query: 1 MAGDTL---SLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKPFTYYVDYIQRRYVPT 55
+ GD L S + +LI+GPG+ + +I+ SG+L H + + Y++ RRY+P
Sbjct: 6 IPGDDLPSHSTDQNSQLIIGPGIYVNPINKSIIPINSGLLNH-QANSLYIESNSRRYIPQ 64
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
+ D VIG V GD ++V + + +V LS +AF ATKKN P ++ G++V ++ AN
Sbjct: 65 QNDFVIGKVIGSFGDVFKVSLSNFSNSVSLSSMAFPNATKKNRPNIKNGNLVYARVSNAN 124
Query: 115 KDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKME 172
K++++E+ C+D + GK+ G+L GYLL S+S R LL NP+C +L +L K+ K E
Sbjct: 125 KEIDTELECIDPTTGKDGGFGLLEGGYLLEVSLSFARFLLFNPQCQILNELVKKC--KFE 182
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
++IG NG IWI+ + T+ + + + L +E+
Sbjct: 183 IAIGCNGLIWIKSDELKYTLALSKCLEKAQFLKQDEL 219
>gi|393907692|gb|EJD74744.1| hypothetical protein, variant [Loa loa]
Length = 191
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 104/162 (64%), Gaps = 3/162 (1%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAG 108
RRYVP +GD VIG+VTS G+ +++DIG+ D A +S+L+FEGAT++N P ++ GD++
Sbjct: 5 SRRYVPQKGDFVIGIVTSVHGETFKIDIGAADIAFISFLSFEGATRRNRPNLKVGDLIYA 64
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRS 167
+ TA K +E E+ CVD G+ MG L + G+L TS++L R++L+P LL + K
Sbjct: 65 SVTTATKHLEPELTCVDGEGRARGMGPLPSGGFLFKTSLNLVRRILSPTSKLLSLIGK-- 122
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
K E++ G+NG+IWI+ + + + V +I E + +I
Sbjct: 123 DIKFEITSGINGRIWIKGINVVEVIAVYRIIKDSEFIPEPDI 164
>gi|403416851|emb|CCM03551.1| predicted protein [Fibroporia radiculosa]
Length = 230
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 119/196 (60%), Gaps = 9/196 (4%)
Query: 14 LILGPGLRRESSA-----ILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL + SSA I+ +++G L H A ++++ RRYVP + VIGVV +R
Sbjct: 17 LKLGPGLLQLSSADGKSSIISTRAGELNHSANRSRWWIESNARRYVPASQESVIGVVIAR 76
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
G+N+RVDIG+ A L LAFEGATK+N P ++ G ++ ++ A+KDME E+ C D++
Sbjct: 77 SGENWRVDIGAAHMATLDGLAFEGATKRNRPNLKVGSLLYARVSLAHKDMEPELECFDAQ 136
Query: 128 GKEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
++ G L G+++H S+ +CR LL+PK LL L ++ +E + G+NG++WI +
Sbjct: 137 TRKAEGFGELKGGFVVHCSLKMCRHLLDPKHFLLPMLG--AQFPLETATGLNGRVWINAK 194
Query: 187 SFSDTVRVGNLIMSCE 202
+ V I + +
Sbjct: 195 EAKTIIAVSRCIEAVD 210
>gi|390603322|gb|EIN12714.1| hypothetical protein PUNSTDRAFT_130962 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 231
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 119/196 (60%), Gaps = 9/196 (4%)
Query: 14 LILGPGLRRESSA-----ILVSQSGILRHA-KPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL +++SA I+ +++G L H+ +++D RRYVP + V+GVV +R
Sbjct: 18 LKLGPGLLQQTSADGSEYIMSTRAGALNHSSNGAKWWIDSNSRRYVPAPQESVVGVVIAR 77
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
G+N+RVDIGS A L LAFEGATK+N P ++ G +V ++ A+KDME E+ C D++
Sbjct: 78 SGENWRVDIGSAHMATLDGLAFEGATKRNRPNLKVGSLVYARVSLAHKDMEPELECFDAQ 137
Query: 128 GKEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
++ G L G+L+ S+ + R LL+P LL L +R +E++ G+NG++WI +
Sbjct: 138 TRKAEGFGELKGGFLVKCSLKMARLLLDPSHFLLPFLGQRF--PLEVATGVNGRVWINAK 195
Query: 187 SFSDTVRVGNLIMSCE 202
T+ V I + +
Sbjct: 196 DVKQTIAVSRCIEAVD 211
>gi|50285209|ref|XP_445033.1| exosome complex component RRP40 [Candida glabrata CBS 138]
gi|49524336|emb|CAG57933.1| unnamed protein product [Candida glabrata]
Length = 234
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 128/210 (60%), Gaps = 10/210 (4%)
Query: 1 MAGDTLSLNAEPRLILGPGL--RRESSAILVSQSGI---LRHAKPFTYYVDYIQRRYVPT 55
M GD L+L+ ++LGPG+ ++ ++ +G+ AK T YV+Y +RY+P+
Sbjct: 4 MPGDELALDQGKPVVLGPGVYCDPQTQTVVPVNAGVPVVKESAKRQTVYVEYNSKRYIPS 63
Query: 56 RGDLVIGVVTSRVGDNYR-VDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
GDLVIGV+TS D+YR + LSY+AF A+KKN P ++ GD+V ++ +A
Sbjct: 64 VGDLVIGVITSTFSDSYRVSLSSFSNSVSLSYMAFPNASKKNRPTLKVGDLVYARVSSAE 123
Query: 115 KDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKME 172
K++E+E+ C+DS G+ G+L G ++ +++ R+LL N PLL L+KR++ E
Sbjct: 124 KELEAEIECLDSTTGESAGFGLLEGGMVIDVTLAFARRLLFNDNFPLLLLLSKRTQ--FE 181
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
++IG+NGK+WI+C+ T+ IM C+
Sbjct: 182 VAIGVNGKVWIKCDEVKYTMACFRSIMKCQ 211
>gi|255717512|ref|XP_002555037.1| exosome complex component RRP40 [Lachancea thermotolerans CBS 6340]
gi|238936420|emb|CAR24600.1| KLTH0F19558p [Lachancea thermotolerans CBS 6340]
Length = 236
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 121/208 (58%), Gaps = 10/208 (4%)
Query: 3 GDTLSLNAEPRLILGPGL-----RRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRG 57
GD L + + +++GPG+ +E + I K + VD+ +RY+P G
Sbjct: 8 GDKLDIADKENVVIGPGVYCDPRTQEIRPVNAGFEVIGSTKKNLSIRVDHNSKRYIPAVG 67
Query: 58 DLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
DLV+G++T D+YRV + S P LSY+AF A+KKN P ++ GD+V ++ A+K+
Sbjct: 68 DLVVGLITGSFSDSYRVSLASFSSPVTLSYMAFPNASKKNRPSLKVGDLVYARVCKADKE 127
Query: 117 MESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKL-LNPKCPLLKQLAKRSRQKMELS 174
+E+E+ CVDS GK+ G+L+ G + S++ R+L N + PLL LAK ++ E++
Sbjct: 128 LEAEIECVDSTTGKDAGFGLLDGGMVADVSLAFSRELTFNNEYPLLTLLAKNAQ--FEIA 185
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCE 202
IG+NGK+WI+C+ T+ I C+
Sbjct: 186 IGINGKVWIKCDDVKSTLACYRSINDCQ 213
>gi|159485988|ref|XP_001701026.1| 3'-5' exonuclease component of the exosome [Chlamydomonas
reinhardtii]
gi|158281525|gb|EDP07280.1| 3'-5' exonuclease component of the exosome [Chlamydomonas
reinhardtii]
Length = 231
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 120/208 (57%), Gaps = 3/208 (1%)
Query: 14 LILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
L L GL A+ + G+L+ + +++ Q+RY+P GD+V+GV++ + +N+
Sbjct: 25 LRLSAGLTTHDGAVTSLKGGVLKSTRTGQLFLEGRQKRYIPAEGDVVVGVISDKHSENFT 84
Query: 74 VDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIM 133
VDIG AVL L+FEGAT++N P + GD+V +++TA++D + + C+DS G+
Sbjct: 85 VDIGGPFNAVLPQLSFEGATRRNRPNLHPGDLVYARVVTAHRDTDPVLSCMDSAGRASGF 144
Query: 134 GILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
G L +G +L S +L R+LL +P P+L+ L S + EL++G+NG++W+ + + V
Sbjct: 145 GHLKEGMVLSCSSALARQLLGSPTAPVLEALG--SGLQFELAVGLNGRVWLSAPTAATCV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESIHIRF 220
V N I E + ++ + + R
Sbjct: 203 VVANAISESEFRTPAQVRTMVARVLSRL 230
>gi|403213304|emb|CCK67806.1| hypothetical protein KNAG_0A01170 [Kazachstania naganishii CBS
8797]
Length = 236
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 121/199 (60%), Gaps = 10/199 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRH--AKPFTYYVDYIQRRYVPTR 56
+ GD+L ++ +ILGPG+ + + ++ +G+ RH K T YVDY +RY+P
Sbjct: 6 LPGDSLGIHDGVPVILGPGVSCDPMTQEVIPVNAGV-RHYIEKKNTVYVDYNAKRYIPAV 64
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
GDLVIG + S D+Y+V + +V LSY++F ATKKN P ++ GD+V ++LTA K
Sbjct: 65 GDLVIGTIVSTFADSYKVSLSDFSASVSLSYMSFPNATKKNRPTLQVGDLVYARVLTAEK 124
Query: 116 DMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMEL 173
++E+E+ C+DS G G+L +G ++ +S R LL N PLL LA+ + E+
Sbjct: 125 ELEAEIECMDSVTGVHAGFGLLENGMVISVPLSFARTLLFNDTFPLLSTLAQSCQ--FEI 182
Query: 174 SIGMNGKIWIRCESFSDTV 192
+IG+NG+IW+ + +T+
Sbjct: 183 AIGINGRIWVSTDKIENTL 201
>gi|330846337|ref|XP_003294994.1| hypothetical protein DICPUDRAFT_160096 [Dictyostelium purpureum]
gi|325074419|gb|EGC28480.1| hypothetical protein DICPUDRAFT_160096 [Dictyostelium purpureum]
Length = 233
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYY-VDYIQRRYVPTRGDLVI 61
GD + + ++ +GPGL + ++ +++G+LR++K +Y ++ Q+RYVP D+VI
Sbjct: 12 GDVIGKIGDLKVRIGPGLLQSKETVVATKAGVLRYSKFHKFYWIENEQKRYVPQVEDMVI 71
Query: 62 GVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEM 121
G + + ++++VDIGS A+LS +FEGATK N P + G++V ++ AN+DME E+
Sbjct: 72 GTIVEKHAESFKVDIGSSCNALLSAYSFEGATKSNKPLLNIGNLVYARVTVANRDMEPEI 131
Query: 122 VCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKI 181
VC+ + K G L GY+L+ S+ L LL+ C +L+ L K E+++G+NG++
Sbjct: 132 VCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSEDCYILQVLGKHI--PYEIAVGVNGRV 189
Query: 182 WI 183
W+
Sbjct: 190 WV 191
>gi|389744768|gb|EIM85950.1| exosome complex exonuclease RRP40 [Stereum hirsutum FP-91666 SS1]
Length = 230
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 9/196 (4%)
Query: 14 LILGPGLRRESSA-----ILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL++ S+A ++ +++G L+H A ++V+ RRYVP + V+GVVT R
Sbjct: 17 LKLGPGLQQLSNAEGSTSVVSTRAGELQHSANGSKWWVESNARRYVPAPQESVVGVVTGR 76
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
+G+ +RVDIG A L LAFEGA+++N P ++ G VV ++ A+KDME E+ C D++
Sbjct: 77 MGEGFRVDIGGAHNASLDALAFEGASRRNRPALKVGSVVYARVSLAHKDMEPELECFDAQ 136
Query: 128 GKEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
++ G L G+L S+ +CR+LL+P LL L SR ++ ++G+NG++W+ +
Sbjct: 137 TRKAEGFGELKGGFLTRCSLKMCRQLLDPDYFLLPMLG--SRFPLDAAVGVNGRVWVSAK 194
Query: 187 SFSDTVRVGNLIMSCE 202
T+ V I + +
Sbjct: 195 EVKQTIAVTRCIEAAD 210
>gi|410083256|ref|XP_003959206.1| hypothetical protein KAFR_0I02920 [Kazachstania africana CBS 2517]
gi|372465796|emb|CCF60071.1| hypothetical protein KAFR_0I02920 [Kazachstania africana CBS 2517]
Length = 236
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 10/207 (4%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQ-----SGILRHAKPFTYYVDYIQRRYVPTRG 57
GD L ++ + LGPG+ + ++ I + ++DY +RYVP G
Sbjct: 8 GDKLDIDLTKNVSLGPGVYCDPRTQIIQPVNAGIENIQVGKRGQIVHIDYDSKRYVPAVG 67
Query: 58 DLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
D V+G++T D+YRV + S P LSY+AF A+KKN P ++ GD+V ++ TA K+
Sbjct: 68 DFVVGIITGAFADSYRVSLASFSSPVSLSYMAFPNASKKNRPTLKIGDLVYARVCTAEKE 127
Query: 117 MESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELS 174
+E+E+ CVDS G+ G+L G ++ S+ R LL + K PLL+ L++ K E++
Sbjct: 128 LEAEIECVDSTTGQSSGFGLLEGGMVMDVSLKFARNLLFDEKFPLLRLLSQHC--KFEIA 185
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSC 201
IG+NGKIWI+ E DT+ I+ C
Sbjct: 186 IGVNGKIWIKTEDTKDTLACYKSILDC 212
>gi|302760611|ref|XP_002963728.1| hypothetical protein SELMODRAFT_141745 [Selaginella moellendorffii]
gi|300168996|gb|EFJ35599.1| hypothetical protein SELMODRAFT_141745 [Selaginella moellendorffii]
Length = 231
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 125/205 (60%), Gaps = 5/205 (2%)
Query: 6 LSLNAEPRLI-LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVV 64
L+ A+ +++ LG GL +++ ++ ++G L HAK +V+ Q+RY+P+ D VIG+V
Sbjct: 17 LAAQAQNKVLRLGSGLSQDADRVVAIKAGRLNHAKS-KLWVEGSQKRYIPSAEDSVIGIV 75
Query: 65 TSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV 124
R + + VD+ + +L L+FEGAT+KN P ++ G VV G+++ A++D+ + C+
Sbjct: 76 IDRRAEEFLVDLNAPVLGLLPILSFEGATRKNIPNLKEGAVVYGRVVKAHRDISPALSCL 135
Query: 125 DSRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
D+ GK G L +GYL S L R LL P P+L+ L K E+++G+NG++W+
Sbjct: 136 DASGKGSGYGPLKEGYLFECSTGLARSLLGTPTYPVLEALGK--SLAFEIAVGVNGRVWV 193
Query: 184 RCESFSDTVRVGNLIMSCELLSYEE 208
+ ++ + TV V N I++ E LS +
Sbjct: 194 KSDAPATTVLVSNAIINSECLSAAQ 218
>gi|452821561|gb|EME28590.1| exosome complex component RRP4 [Galdieria sulphuraria]
Length = 244
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 119/207 (57%), Gaps = 9/207 (4%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
+G G+ + ++ + G L H +++ Q+RY+PT GDLVIG++ R D Y+VD
Sbjct: 27 IGQGVVKRGDGLVALKPGYL-HKDGNKIWIETAQKRYIPTVGDLVIGIIVDRSSDFYQVD 85
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGK------ 129
+G A+L LAFEGATK+N P + G V ++++A++D E ++ C+ +
Sbjct: 86 VGGFSTALLPILAFEGATKRNRPHLSAGSAVYARVVSADRDSEPQLSCLLPGTQHSWVTG 145
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFS 189
E I G L+ G L+H SISLCR +L + + +L K E + GMNG+IW+R +S
Sbjct: 146 ETIFGELSQGNLIHCSISLCRNILLGRNSVFTELGKYI--PFEQATGMNGRIWVRSQSAG 203
Query: 190 DTVRVGNLIMSCELLSYEEILNLCESI 216
V + NLI+ E ++ +++ + +S+
Sbjct: 204 HIVLLSNLIICSENMTNDQLSAMIKSL 230
>gi|444322370|ref|XP_004181828.1| hypothetical protein TBLA_0H00160 [Tetrapisispora blattae CBS 6284]
gi|387514874|emb|CCH62309.1| hypothetical protein TBLA_0H00160 [Tetrapisispora blattae CBS 6284]
Length = 240
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 123/211 (58%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSL--NAEPRLILGPGLRRESSAILVS--QSGI---LRHAKPFTYYVDYIQRRYV 53
+ GD LS+ N E ++LGPG+ + +++ +GI + K T +DY RY+
Sbjct: 7 LPGDLLSVTTNEELPVLLGPGVVEDPQTQIITPVNAGIEVVTQTRKATTINIDYDSTRYI 66
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P GD VIG++T GD+Y+V + S V LSY+AF ATKKN P ++ GD+V ++ +
Sbjct: 67 PAVGDYVIGIITGAFGDSYKVSLASFSNGVSLSYMAFPNATKKNRPTLKVGDLVYARVCS 126
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ CVDS GK+ G L G ++ ++S R LL N +LK LAK ++
Sbjct: 127 AEKELEAEIECVDSTTGKDTGFGHLAGGMVIDVTLSFARNLLFNNDSSMLKILAKHTQ-- 184
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++ +T+ I C
Sbjct: 185 FEIAIGVNGKIWVKAPDIKNTLACYKSIEEC 215
>gi|301090233|ref|XP_002895341.1| exosome complex exonuclease RRP40, putative [Phytophthora infestans
T30-4]
gi|262100455|gb|EEY58507.1| exosome complex exonuclease RRP40, putative [Phytophthora infestans
T30-4]
Length = 271
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 11/206 (5%)
Query: 13 RLILGPGLRR-ESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
R+ LG GL++ I+ + +GILR+ Y+V++ +RY + D VIG++T R +
Sbjct: 54 RVKLGSGLKQLPDERIVCTNAGILRYRPANRYWVEFNHKRYTASIDDGVIGILTDRNAEF 113
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV---DSRG 128
YRV+IG+ A L LAF+GATK+N P + G +V ++ N D+E E+ C
Sbjct: 114 YRVNIGAAASATLGSLAFDGATKRNRPSLRLGSLVYARVSKTNADVEPEITCEAPPSVTK 173
Query: 129 KEFIMGI-----LNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
K+++ G+ LNDGY+ TSI L + LL+ C +L L K + E+++G+NG +W+
Sbjct: 174 KDWMTGLAIYGELNDGYVFKTSIGLAKSLLHEDCQVLASLGK--KLAFEVAVGVNGVVWV 231
Query: 184 RCESFSDTVRVGNLIMSCELLSYEEI 209
++ + + N IM+ E +S ++
Sbjct: 232 HAKTTKNITIISNAIMNSEAMSLSKV 257
>gi|326428875|gb|EGD74445.1| hypothetical protein PTSG_05810 [Salpingoeca sp. ATCC 50818]
Length = 264
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 44 YVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETG 103
+VD + +R +P GD VIG++T G+NY VDIG A L LAFEGATK+N P+++ G
Sbjct: 88 WVDGVHKRALPAEGDYVIGIITGTPGENYNVDIGGSCNATLHNLAFEGATKRNRPRLKVG 147
Query: 104 DVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQL 163
D+V ++ +K ME E+ CV + GK MG+L G+L S+ L R LL+ C +L L
Sbjct: 148 DLVYARVQLMHKYMEPELTCVHASGKAQGMGLLEGGFLFEISLGLSRTLLSRGCAVLHAL 207
Query: 164 AKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
+ E++IG NG++W + +T+ V N I + E LS + L + +
Sbjct: 208 G--AELPFEITIGRNGRVWAKAARACETMLVVNAIRASERLSAKHTRELVKEM 258
>gi|122920873|pdb|2JA9|A Chain A, Structure Of The N-Terminal Deletion Of Yeast Exosome
Component Rrp40
Length = 175
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 101/155 (65%), Gaps = 5/155 (3%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAG 108
+RY+P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V
Sbjct: 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYA 60
Query: 109 KLLTANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKR 166
++ TA K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA
Sbjct: 61 RVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAH 120
Query: 167 SRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
+ K E++IG+NGKIW++CE S+T+ IM C
Sbjct: 121 T--KFEVAIGLNGKIWVKCEELSNTLACYRTIMEC 153
>gi|168047049|ref|XP_001775984.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672642|gb|EDQ59176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 6 LSLNAEPRLI-LGPGLRRESSAILVSQSGILRHAKPFT-YYVDYIQRRYVPTRGDLVIGV 63
L LN+ +++ +G GLR++ +IL +++G LR K Y+V+ Q+RY+P D V+G+
Sbjct: 21 LDLNSTNKVLRVGSGLRQDGDSILATKAGKLRFQKQSNKYWVEGSQKRYIPNVEDTVVGI 80
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
+ R + + +DIG L LAFEGAT++N P ++ G V +++ A++D + E+ C
Sbjct: 81 MVDRRSEMFILDIGGPAFGSLPILAFEGATRRNIPNLQAGAAVYARVVNAHRDSDPELSC 140
Query: 124 VDSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIW 182
D+ GK G L G++ S L R LL+ P P+L+ L K E+++G+NG++W
Sbjct: 141 TDAAGKSAGFGPLKGGFIFDCSTGLARGLLSKPTPPVLEVLGK--SLSFEIAVGLNGRVW 198
Query: 183 IRCESFSDTVRVGNLIMSCELLS 205
+ + + V N I + E LS
Sbjct: 199 VNAPKVATIITVSNAIQNAEFLS 221
>gi|302786082|ref|XP_002974812.1| hypothetical protein SELMODRAFT_102189 [Selaginella moellendorffii]
gi|300157707|gb|EFJ24332.1| hypothetical protein SELMODRAFT_102189 [Selaginella moellendorffii]
Length = 223
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 124/205 (60%), Gaps = 5/205 (2%)
Query: 6 LSLNAEPRLI-LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVV 64
L+ A+ +++ LG GL +++ ++ ++G L HAK +V+ Q+RY+P+ D VIG+V
Sbjct: 9 LAAQAQNKVLRLGSGLSQDADRVVAIKAGRLNHAKS-KLWVEGSQKRYIPSAEDSVIGIV 67
Query: 65 TSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV 124
R + + VD+ + +L L+FEGAT+KN P ++ VV G+++ A++D+ + C+
Sbjct: 68 IDRRAEEFLVDLNAPVLGLLPILSFEGATRKNIPNLKARAVVYGRVVKAHRDISPALSCL 127
Query: 125 DSRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
D+ GK G L +GYL S L R LL P P+L+ L K E+++G+NG++W+
Sbjct: 128 DASGKGSGYGPLKEGYLFECSTGLARSLLGTPTYPVLEALGK--SLAFEIAVGVNGRVWV 185
Query: 184 RCESFSDTVRVGNLIMSCELLSYEE 208
+ ++ + TV V N I++ E LS +
Sbjct: 186 KSDAPATTVLVSNAIINSECLSAAQ 210
>gi|409042393|gb|EKM51877.1| hypothetical protein PHACADRAFT_199383 [Phanerochaete carnosa
HHB-10118-sp]
Length = 230
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 119/196 (60%), Gaps = 9/196 (4%)
Query: 14 LILGPGL-----RRESSAILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL ++SS+I+ +++G L+H A ++++ RRY P + VIGVV +R
Sbjct: 17 LKLGPGLLQVSDAQKSSSIISTRAGELKHTANNRQWWIESNSRRYAPAPQESVIGVVIAR 76
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
GDN+RVDIGS A L LAFEGATK+N P ++ G ++ ++ A+KDME E+ C D++
Sbjct: 77 SGDNWRVDIGSAHVASLDGLAFEGATKRNRPNLKVGSLLYARVSLAHKDMEPELECFDAQ 136
Query: 128 GKEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
++ G L G+L S+ + R LL+P LL L S+ ++++IG+NG++WI +
Sbjct: 137 TRKAEGFGELKGGFLAKCSLQMSRMLLDPSHFLLPLLG--SKFPLDVAIGVNGRVWISTK 194
Query: 187 SFSDTVRVGNLIMSCE 202
T+ V I + +
Sbjct: 195 EPKHTIAVTRCIEAVD 210
>gi|392591692|gb|EIW81019.1| exosome complex exonuclease RRP40 [Coniophora puteana RWD-64-598
SS2]
Length = 229
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 115/194 (59%), Gaps = 7/194 (3%)
Query: 14 LILGPGLRRES---SAILVSQSGILRHAKPFT-YYVDYIQRRYVPTRGDLVIGVVTSRVG 69
L LGPGL + S S IL +++G L H+ ++V+ RRYVP + VIGVVT+R G
Sbjct: 18 LKLGPGLLQASTTESPILATRAGALHHSPNGARWWVESNARRYVPAAQESVIGVVTARGG 77
Query: 70 DNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG- 128
+ +RVDIGS A L LAFEGATK+N P ++ G +V ++ A+KDME E+ C D++
Sbjct: 78 EAFRVDIGSAHHANLDGLAFEGATKRNRPNLKVGTLVYARVSLAHKDMEPELECFDAQTH 137
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESF 188
K G L G + S+ +CR LL+P LL L +R ++ ++G+NG++WI +
Sbjct: 138 KSDGFGELKGGLAVTCSLKMCRMLLDPSHFLLPFLG--ARFPLDAAVGVNGRVWISTKDA 195
Query: 189 SDTVRVGNLIMSCE 202
T+ LI + +
Sbjct: 196 QTTIVATRLIEAVD 209
>gi|449548599|gb|EMD39565.1| hypothetical protein CERSUDRAFT_111881 [Ceriporiopsis subvermispora
B]
Length = 230
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 111/177 (62%), Gaps = 9/177 (5%)
Query: 14 LILGPGLRRE-----SSAILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL ++ S I+ +++G L H A +++D RRYVP + VIGVV +R
Sbjct: 17 LKLGPGLLQQPSVDGKSPIVSTRAGELHHSANRSKWWIDSNSRRYVPAPQESVIGVVIAR 76
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
G+N+RVDIGS A L LAFEGATK+N P ++ G ++ ++ A+KDME E+ C D++
Sbjct: 77 SGENWRVDIGSAHVASLDGLAFEGATKRNRPNLKVGSLLYARVSLAHKDMEPELECFDAQ 136
Query: 128 GKEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
++ G L G+L++ S+ +CR L++P LL L SR +E + G+NG++WI
Sbjct: 137 TRKAEGFGELKGGFLINCSLRMCRLLMDPSHFLLPLLG--SRFPLEAATGVNGRVWI 191
>gi|367008150|ref|XP_003678575.1| exosome complex component RRP40 [Torulaspora delbrueckii]
gi|359746232|emb|CCE89364.1| hypothetical protein TDEL_0A00320 [Torulaspora delbrueckii]
Length = 238
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 10/223 (4%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSG---ILRHAKPFTYYVDYIQRRYVPT 55
GD L++++E LGPGL + + I + +G I + T YVDY +RY+P
Sbjct: 6 FPGDQLNIDSEQPTTLGPGLYFDPVTQEIGPTNAGVEVIANTKRGQTVYVDYDSKRYIPA 65
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLS-YLAFEGATKKNPPKVETGDVVAGKLLTAN 114
GD VIG++ + D+Y+V + S +V Y+AF A+KKN P ++ GD+V ++ A
Sbjct: 66 VGDYVIGIIVGQFSDSYKVSLSSFSSSVTLSYMAFPNASKKNKPTLKVGDLVYARVCAAE 125
Query: 115 KDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLLNPK-CPLLKQLAKRSRQKME 172
K++E+E+ C+DS G++ G+L G ++ ++ R LL K PLLK L+ S + E
Sbjct: 126 KELEAEIECLDSTTGQDAGFGLLEGGIVIDVTLGFARHLLFDKDFPLLKILS--SFTQFE 183
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCES 215
++IG+NGKIW++CE +T+ I+ C+ S E N +S
Sbjct: 184 VAIGVNGKIWVKCEEVKNTLACYRSIIDCQKTSVSEYKNTIKS 226
>gi|409078952|gb|EKM79314.1| hypothetical protein AGABI1DRAFT_74231 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 231
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 113/197 (57%), Gaps = 10/197 (5%)
Query: 14 LILGPGLRRESS------AILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
L LGPGL++ SS I+ +++G + H A ++++ RRYVP + V+G +
Sbjct: 17 LKLGPGLQQISSNGPSQSKIISTRAGAVNHSANGSRWWIESNSRRYVPALQESVVGAIVQ 76
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
R G+ YRVDIGS A L LAFE ATK+N P ++ G +V ++ A+KDM+ E+ C D+
Sbjct: 77 RQGEGYRVDIGSAHSATLDGLAFESATKRNKPNLKVGCLVYARVSLAHKDMDPELECFDA 136
Query: 127 RG-KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
+ K G L G+++ S+ +CR LL+PK LL L SR E ++GMNG++WI
Sbjct: 137 QTHKSEGFGELKGGFVVKCSLKMCRDLLDPKHFLLPLLG--SRFPFETAVGMNGRVWINA 194
Query: 186 ESFSDTVRVGNLIMSCE 202
+ + + I + +
Sbjct: 195 KQPGQVIAIARCIEAAD 211
>gi|393212995|gb|EJC98493.1| hypothetical protein FOMMEDRAFT_149221 [Fomitiporia mediterranea
MF3/22]
Length = 231
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 9/196 (4%)
Query: 14 LILGPGL-----RRESSAILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL + +S I+ +++G L H A ++V+ RRYVP + V+G V ++
Sbjct: 18 LKLGPGLLVLSDQTGTSNIISTRAGALNHSANGSKWWVESNSRRYVPAPQEYVVGTVIAK 77
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
G+ +R+DIG A L AFEGATK+N P + ++ ++ A+KDME E+ C D++
Sbjct: 78 AGEGWRIDIGGAHMASLDGYAFEGATKRNKPNFKINSLIYARVSLAHKDMEPELECFDAQ 137
Query: 128 G-KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
K G L G+L+ S+ +CR LL+PK LL L S +E ++GMNG++WI +
Sbjct: 138 TRKSEGFGELKGGFLVRCSLGMCRSLLDPKYFLLPLLG--SMFPLETAVGMNGRVWINTK 195
Query: 187 SFSDTVRVGNLIMSCE 202
S TV V I + +
Sbjct: 196 SPKHTVAVARCIEAAD 211
>gi|366992039|ref|XP_003675785.1| hypothetical protein NCAS_0C04310 [Naumovozyma castellii CBS 4309]
gi|342301650|emb|CCC69421.1| hypothetical protein NCAS_0C04310 [Naumovozyma castellii CBS 4309]
Length = 247
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 119/205 (58%), Gaps = 24/205 (11%)
Query: 14 LILGPGL--RRESSAILVSQSGI--LRHAKPF--TYYVDYIQRRYVPTRGDLVIG-VVTS 66
L LGPG+ ++ I+ +Q+GI + H KP YVDY +RY+P GDLVIG +V +
Sbjct: 25 LTLGPGIYCNPQTHEIIPTQAGIAHITHPKPHRTQLYVDYDSKRYIPCVGDLVIGCIVGT 84
Query: 67 RVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
+ GD+YRV + + V L Y+AF A+KKN P + GD+V K+ +A K++E+ + C+D
Sbjct: 85 QGGDSYRVSLSNFSNDVSLPYMAFPNASKKNRPTLVKGDLVYAKVASAEKELEATLECLD 144
Query: 126 SRGKEFIMGILNDGYLLHTSISLCRKLL---------NPKCPLLKQLAKRSRQKMELSIG 176
GIL DG +L + R LL LL+ LA+ + K E++IG
Sbjct: 145 PG-----FGILEDGMVLDCPLRFARMLLFEGDDKQKKEGTSSLLRLLARHT--KFEIAIG 197
Query: 177 MNGKIWIRCESFSDTVRVGNLIMSC 201
+NGKIWI+C++ SDT+ +++ C
Sbjct: 198 INGKIWIKCDTVSDTLACYRIVLEC 222
>gi|254566955|ref|XP_002490588.1| exosome complex component RRP40 [Komagataella pastoris GS115]
gi|238030384|emb|CAY68307.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350975|emb|CCA37375.1| exosome complex component RRP40 [Komagataella pastoris CBS 7435]
Length = 232
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 11/228 (4%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGIL---RHAKPFTYYVDYIQRRYVPT 55
+ GD L + +E +ILGPG + + IL + +GIL + Y +D + Y+P
Sbjct: 7 VPGDRLDIKSE-NIILGPGFYVDPKTDEILPTNAGILEVSQKQNKTVYVIDSKSKTYIPK 65
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
D VIG++T G+ Y+V + A +S AF A+KKN P ++ GDV+ ++L+A
Sbjct: 66 TNDFVIGIITGTFGELYKVGLSEFTQAAQMSVYAFPNASKKNRPHLKVGDVIYARVLSAE 125
Query: 115 KDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKME 172
+D+E E+ C+D + GKE G L DGYL +++ R LL N +L +L K+ K E
Sbjct: 126 RDIEVELECIDPTTGKEGGFGQLEDGYLFTVNLAYARYLLFNENAEILTELVKKC--KFE 183
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRF 220
L++G NG+IWI+ E+ T+ +I + S ++I + + F
Sbjct: 184 LAVGCNGRIWIKSETVKTTITCVKIIEESQNWSKQDIPKKLKEVWAAF 231
>gi|402223059|gb|EJU03124.1| hypothetical protein DACRYDRAFT_21427 [Dacryopinax sp. DJM-731 SS1]
Length = 200
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 116/202 (57%), Gaps = 6/202 (2%)
Query: 20 LRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSH 79
L + + + G+L H+K ++V+ RRY+P + VIGV+ R + YRVD+GS
Sbjct: 2 LHTPGNPVTAHRPGVL-HSKKQQHWVETESRRYIPAPQESVIGVIVHRSAEAYRVDLGSA 60
Query: 80 DPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI-MGILND 138
A L LAFEGATK+N P ++ G++V ++ AN+DM+ E+ C D+ ++ G L D
Sbjct: 61 HLATLDALAFEGATKRNRPALKVGNLVYARVSLANRDMDPELECFDATTRKADGFGELKD 120
Query: 139 GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLI 198
G+++ S+ CRKLL+ LL LA++ E+++G+NG++W+R S T+ V I
Sbjct: 121 GFMVECSLGTCRKLLDSTHFLLPALAQKF--PFEVAVGVNGRVWVRAGSTKATIGVSRAI 178
Query: 199 --MSCELLSYEEILNLCESIHI 218
+ S EE+ + + + +
Sbjct: 179 QMLDNRRTSDEEVASYIQQMDV 200
>gi|393246498|gb|EJD54007.1| exosome complex exonuclease RRP40 [Auricularia delicata TFB-10046
SS5]
Length = 232
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 109/194 (56%), Gaps = 11/194 (5%)
Query: 14 LILGPGLRR-------ESSAILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVT 65
L LGPGL + S I+ +++G L H AK ++V+ RRYVP + VIGVV
Sbjct: 18 LKLGPGLMKLHEAPSASGSGIIATKAGTLHHDAKGIKWWVESNARRYVPAAQEGVIGVVA 77
Query: 66 SRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
+ G+ YRVDIG A L LAFEGA+K+N P ++ G +V ++ A+KDME E+ C D
Sbjct: 78 HKAGEGYRVDIGGAHYASLDGLAFEGASKRNRPMLKVGTLVYARISLAHKDMEPELQCYD 137
Query: 126 SRG-KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
++ K G L G++ S+ R LL+P LL L +R +E+++G+NG++W +
Sbjct: 138 AQTRKSEGFGELKGGFMQPCSLGTSRALLDPAHYLLPMLG--ARFPLEVAVGVNGRVWFK 195
Query: 185 CESFSDTVRVGNLI 198
T+ V I
Sbjct: 196 APEARQTIAVSRCI 209
>gi|363748747|ref|XP_003644591.1| hypothetical protein Ecym_2015 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888224|gb|AET37774.1| Hypothetical protein Ecym_2015 [Eremothecium cymbalariae
DBVPG#7215]
Length = 236
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 121/209 (57%), Gaps = 10/209 (4%)
Query: 1 MAGDTLSLNAEPRLILGPGLR-----RESSAILVSQSGILRHAKPFTYYVDYIQRRYVPT 55
+ GD LS+N E L LGPG+ +E + + K + YVDY +RY+P+
Sbjct: 6 IPGDKLSINNEVPLSLGPGVSCDPRSQEVRPVNAGLEVVSNTKKGQSLYVDYNSKRYLPS 65
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLS-YLAFEGATKKNPPKVETGDVVAGKLLTAN 114
GD VIG+VT+ D+Y+V + S +V+ Y+AF ATKKN P ++ GD+ ++ +A
Sbjct: 66 VGDYVIGLVTASFSDSYKVSLSSFSSSVVLSYMAFPNATKKNRPTLKVGDLCYARVCSAE 125
Query: 115 KDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKME 172
KD+E+E+ CVDS GK+ GIL G ++ ++ R+LL N + P L LA+ + E
Sbjct: 126 KDLEAEIECVDSTTGKDAGFGILEGGAVVEVPLAFARELLFNNQYPFLPILAQNI--EFE 183
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
++IG+NGKIWI+ + S T+ I C
Sbjct: 184 VAIGLNGKIWIKTANLSTTLACYRAIQKC 212
>gi|392580535|gb|EIW73662.1| hypothetical protein TREMEDRAFT_67481 [Tremella mesenterica DSM
1558]
Length = 239
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 122/211 (57%), Gaps = 15/211 (7%)
Query: 1 MAGDTLSLNAEPRLILGPGL---------RRESSAILVSQSGILRHAK---PFTYYVDYI 48
+ GD L L + LGPG+ +S + ++ G+L K +V+
Sbjct: 7 LPGDRLYLPESSSVTLGPGIASSSRSGNSTSDSLIFIATKLGVLSSVKGKEKARIWVETR 66
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAG 108
+RY+P + DL+IG + +R + YRVDIGS A L LAFE ATK++ P ++ G +V G
Sbjct: 67 SKRYIPAQKDLIIGTIIARHAEGYRVDIGSAQMAQLDALAFESATKRSKPNLKIGTLVYG 126
Query: 109 KLLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRS 167
++ AN+DM+ E+ C D S GK G L +G ++ S+ LCR+LL PK PLL LA S
Sbjct: 127 RVTLANRDMDPEIECFDPSTGKSEGFGELKEGLMVECSLQLCRQLLKPKYPLLLALA--S 184
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRVGNLI 198
+ K E++IG+NG+IW++ S +T+ + +I
Sbjct: 185 QVKFEIAIGLNGRIWLKAPSVGETIALKRVI 215
>gi|426195861|gb|EKV45790.1| hypothetical protein AGABI2DRAFT_207051 [Agaricus bisporus var.
bisporus H97]
Length = 231
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 14 LILGPGLRRESS------AILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
L LGPGL++ SS I+ +++G + A ++++ RRYVP + V+G +
Sbjct: 17 LKLGPGLQQISSNGPSQSKIISTRAGAVNQSANGSRWWIESNSRRYVPALQESVVGAIVQ 76
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
R G+ YRVDIGS A L LAFE ATK+N P ++ G +V ++ A+KDM+ E+ C D+
Sbjct: 77 RQGEGYRVDIGSAHSATLDGLAFESATKRNKPNLKVGCLVYARVSLAHKDMDPELECFDA 136
Query: 127 RG-KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
+ K G L G+++ S+ +CR LL+PK LL L SR E ++GMNG++WI
Sbjct: 137 QTHKSEGFGELKGGFVVKCSLKMCRDLLDPKHFLLPLLG--SRFPFETAVGMNGRVWINA 194
Query: 186 ESFSDTVRVGNLIMSCE 202
+ + + I + +
Sbjct: 195 KQPGQVIAIARCIEAAD 211
>gi|50308083|ref|XP_454042.1| exosome complex component RRP40 [Kluyveromyces lactis NRRL Y-1140]
gi|49643177|emb|CAG99129.1| KLLA0E02091p [Kluyveromyces lactis]
Length = 240
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 130/227 (57%), Gaps = 12/227 (5%)
Query: 1 MAGDTLSLN--AEPRLILGPGLRRE--SSAILVSQSG---ILRHAKPFTYYVDYIQRRYV 53
+ GD +S + + GPG+ + S I + +G + + K + YVDY +RY+
Sbjct: 6 LPGDVISADETQSQSISAGPGIYSDPLSQEIKATHAGLEVVTPNKKGASVYVDYNSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSH-DPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P GD V+GV+ + GD+YRV + + +P LSY+AF A+KKN P ++ GD+ ++ +
Sbjct: 66 PAVGDFVVGVIVASFGDSYRVSLCNFSNPVTLSYMAFPNASKKNKPTLKVGDLCYARVCS 125
Query: 113 ANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C+D S+G++ G+L+ G + S++ R+LL N PLL L + +
Sbjct: 126 AYKELEAEIECMDSSKGQDAGFGLLDGGMTIEVSLAYARELLFNDSYPLLNILG--NLVE 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIH 217
E++IG+NG IW++ + T+ I++C+ +S + +SI
Sbjct: 184 FEVAIGVNGIIWLKTDDVRTTLACYRSILTCQGVSPAQFDKTIKSIF 230
>gi|302688503|ref|XP_003033931.1| hypothetical protein SCHCODRAFT_36527 [Schizophyllum commune H4-8]
gi|300107626|gb|EFI99028.1| hypothetical protein SCHCODRAFT_36527, partial [Schizophyllum
commune H4-8]
Length = 175
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 103/158 (65%), Gaps = 4/158 (2%)
Query: 28 LVSQSGILRHA-KPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSY 86
+ +++G + H+ ++VD RRYVP + V+GVVT RVG+ +RVDIG+ A L
Sbjct: 1 VATKAGTVHHSPNNARWWVDANSRRYVPAAQESVLGVVTLRVGEAFRVDIGAAHNANLDG 60
Query: 87 LAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI-MGILNDGYLLHTS 145
LAFEGATK+N P+++ G +V ++ A++DM+ E+ C D++ ++ G L G+L+H S
Sbjct: 61 LAFEGATKRNRPQLKVGSLVYARVSLAHRDMDPELECFDAQTRKAEGFGELKGGFLVHCS 120
Query: 146 ISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
+ +CR+LL+P LL L S +E ++GMNG++WI
Sbjct: 121 LLMCRQLLSPDHFLLPLLG--SMFPLEAAVGMNGRVWI 156
>gi|170089229|ref|XP_001875837.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649097|gb|EDR13339.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 227
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 111/185 (60%), Gaps = 6/185 (3%)
Query: 14 LILGPGLRRESSA--ILVSQSGILRH-AKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGL + A I+ +++GIL H A ++V+ +RYVP + V+GV+T R+G+
Sbjct: 17 LKLGPGLLQVPGAGSIISTRAGILNHSANRSKWWVESNSKRYVPAPQESVVGVITQRLGE 76
Query: 71 NYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG-K 129
YRVDIG+ A L LAFEGA+K+N P ++ G +V ++ A+KDME E+ C D++ K
Sbjct: 77 GYRVDIGAAHYASLDSLAFEGASKRNKPNLKVGCLVYARVSLAHKDMEPELECFDAQTRK 136
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFS 189
G L G+++ + +C LL+ K LL L R +E+++G+NG++W+ +
Sbjct: 137 SEGFGELKGGFVVRCGLKMCLDLLDTKHFLLPLLG--GRFPLEVAVGLNGRVWVNAKEIK 194
Query: 190 DTVRV 194
+ +
Sbjct: 195 QVIAI 199
>gi|254579635|ref|XP_002495803.1| exosome complex component RRP40 [Zygosaccharomyces rouxii CBS 732]
gi|238938694|emb|CAR26870.1| ZYRO0C03388p [Zygosaccharomyces rouxii]
Length = 237
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 124/212 (58%), Gaps = 10/212 (4%)
Query: 1 MAGDTLSLNAEPRLILGPGL--RRESSAILVSQSG---ILRHAKPFTYYVDYIQRRYVPT 55
GD L + L +GPG+ +S +L +G + K + Y+DY +RY+P
Sbjct: 6 FPGDQLHYDENKPLNIGPGVYCDPKSQKVLPINAGSAVVSDSKKDQSLYIDYDSKRYIPA 65
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
GDLV+G++ + D+Y+V + S +V L Y+AF A+KKN P ++ GD+V ++ +A
Sbjct: 66 VGDLVVGIIVGQYTDSYKVSLSSFSTSVTLPYMAFPNASKKNKPTLKIGDLVYARVSSAE 125
Query: 115 KDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKME 172
K++E+E+ CVD + GK+ G+L+ G + ++ R LL + PLL LAK ++ E
Sbjct: 126 KELEAELECVDATTGKDAGYGLLDGGMTVDVTLKFARHLLFDNSFPLLPILAKHTQ--FE 183
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSCELL 204
++IG+NGKIWI+CE DT+ I+ C+ L
Sbjct: 184 IAIGVNGKIWIKCEEVKDTLACYRSILDCQSL 215
>gi|405120233|gb|AFR95004.1| 3'-5'-exoribonuclease [Cryptococcus neoformans var. grubii H99]
Length = 247
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 44 YVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETG 103
+++ +RY+P + D+V+G++ +R D YRVD+GS A L LAFEGATK++ P ++ G
Sbjct: 70 WIEGNSKRYIPAQKDIVLGIIIARHADGYRVDLGSSQMAQLDALAFEGATKRSKPNLKVG 129
Query: 104 DVVAGKLLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
+V ++++A++DME E+ C D + GK G L G +++ ++ LCR+LL+ +L
Sbjct: 130 TLVFARVMSASRDMEPELECFDPNTGKSDGFGELKGGVMVNATLQLCRRLLDRNHIVLPT 189
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
+A S E++IG+NG++W++ E+ +T+ + LI S +
Sbjct: 190 IA--SVFPFEIAIGLNGRVWMKAETVGETLAMKRLIESVD 227
>gi|58266170|ref|XP_570241.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110996|ref|XP_775962.1| hypothetical protein CNBD3690 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258628|gb|EAL21315.1| hypothetical protein CNBD3690 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226474|gb|AAW42934.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 247
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 44 YVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETG 103
+++ +RY+P + D+V+G++ +R D YRVD+GS A L LAFEGATK++ P ++ G
Sbjct: 70 WIEGNSKRYIPAQKDIVLGIIIARHADGYRVDLGSSQMAQLDALAFEGATKRSKPNLKVG 129
Query: 104 DVVAGKLLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
+V ++++A++DME E+ C D + GK G L G +++ ++ LCR+LL+ +L
Sbjct: 130 TLVFARVMSASRDMEPELECFDPNTGKSDGFGELKGGVMVNATLQLCRRLLDRNHIVLPT 189
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
+A S E++IG+NG++W++ E+ +T+ + LI S +
Sbjct: 190 IA--SIFPFEIAIGLNGRVWMKAETVGETLAMKRLIESVD 227
>gi|410730431|ref|XP_003671395.2| hypothetical protein NDAI_0G03750 [Naumovozyma dairenensis CBS 421]
gi|401780213|emb|CCD26152.2| hypothetical protein NDAI_0G03750 [Naumovozyma dairenensis CBS 421]
Length = 253
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 122/217 (56%), Gaps = 21/217 (9%)
Query: 1 MAGDTLSLN----AEPRLILGPGLRRESSAILVS--QSGIL-----RHAKPFTYYVDYIQ 49
+ GD+L ++ RL+LGPGL + + + +G L ++ ++DY
Sbjct: 14 LPGDSLPISETDLKSHRLVLGPGLYTDPKTLTIHPVNAGKLYITQNNNSNRINIHIDYES 73
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAG 108
RY+P DLVIG + D+Y+V + S +V LSY+AF A+KKN P ++ GD+V
Sbjct: 74 HRYIPHVNDLVIGCIVGTFADSYKVSLNSFSNSVSLSYMAFPNASKKNRPTLKIGDLVYC 133
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLH-TSISLCRKLL-NPKCPLLKQLAKR 166
K+ TA K++E+ + C++S G+L DG ++ T + R LL + + PLL+ LA
Sbjct: 134 KVATAVKELEATVECLESG-----FGLLEDGMIIDSTGLKFVRLLLFDDQFPLLRLLA-- 186
Query: 167 SRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCEL 203
SR K E++IG+NGKIWI+ + DT+ I+ C +
Sbjct: 187 SRTKFEIAIGVNGKIWIKADEIKDTLACYRSILDCSM 223
>gi|260815751|ref|XP_002602636.1| hypothetical protein BRAFLDRAFT_123025 [Branchiostoma floridae]
gi|229287947|gb|EEN58648.1| hypothetical protein BRAFLDRAFT_123025 [Branchiostoma floridae]
Length = 186
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 54/199 (27%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
++ LGPGLR+E +LV++ GILRH +P Y++D QRR
Sbjct: 26 KVALGPGLRQEGEEVLVTKGGILRHKEPNLYWIDCHQRR--------------------- 64
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
GD+V KLL ANKDME E+VC+DS G
Sbjct: 65 -----------------------------VGDLVFAKLLVANKDMEPELVCIDSGGHSSG 95
Query: 133 MGIL--NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSD 190
G++ + G+++HTS++L RK+L+P C +LK L K E ++GMNG+IW++ ++ D
Sbjct: 96 YGVIPADGGFMVHTSLNLVRKILSPNCDILKFLGKNV--PFETAVGMNGRIWVKAKTPKD 153
Query: 191 TVRVGNLIMSCELLSYEEI 209
T+ V N I S E ++ +I
Sbjct: 154 TIVVANAIASSEHMTNAQI 172
>gi|312079999|ref|XP_003142414.1| exosome complex exonuclease RRP40 [Loa loa]
Length = 174
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 12/169 (7%)
Query: 1 MAGDTLSLNAEPR---LILGPGLRR---ESSAILVSQSGILR--HAKPFTYYVDYIQRRY 52
+ GD LSL + I+G GL R +LV Q GI R H K ++ RRY
Sbjct: 6 LPGDILSLVVPGKGRTEIIGCGLERVINNPDQLLVVQPGIRRVSHGK---QWMAVHSRRY 62
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
VP +GD VIG+VTS G+ +++DIG+ D A +S+L+FEGAT++N P ++ GD++ + T
Sbjct: 63 VPQKGDFVIGIVTSVHGETFKIDIGAADIAFISFLSFEGATRRNRPNLKVGDLIYASVTT 122
Query: 113 ANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLL 160
A K +E E+ CVD G+ MG L + G+L TS++L R++L+P LL
Sbjct: 123 ATKHLEPELTCVDGEGRARGMGPLPSGGFLFKTSLNLVRRILSPTSKLL 171
>gi|299471081|emb|CBN78940.1| RNA binding protein [Ectocarpus siliculosus]
Length = 249
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 11/201 (5%)
Query: 14 LILGPGL-RRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
L LGPGL + ++ +++G+LR+ P +Y+V+ RRY D V+G+V R+ D+Y
Sbjct: 27 LRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSY 86
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV-------- 124
+V+I A+L L F+GA+K++ P + TG +V ++ NKDME+E+ C
Sbjct: 87 KVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKK 146
Query: 125 DSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
D + G L G + S+ L + L P C +LK LAK EL+ G+NG W+
Sbjct: 147 DWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAK--HMPFELAAGLNGTFWVD 204
Query: 185 CESFSDTVRVGNLIMSCELLS 205
S + T+ + N I++ E+++
Sbjct: 205 SGSEAHTIVICNAILNSEVMT 225
>gi|443917435|gb|ELU38155.1| exosome complex exonuclease RRP40 [Rhizoctonia solani AG-1 IA]
Length = 234
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 128/235 (54%), Gaps = 26/235 (11%)
Query: 1 MAGDTLSLNA--EPRLILGPGLR-----RESSAILVS--QSGILRHAKPFTYYVDYIQRR 51
+ GDTL A + LGPGL+ R A+ VS G+LRHA + +I RR
Sbjct: 7 LPGDTLPGAALTGTSIKLGPGLQQSRGGRADGALSVSAVSPGVLRHATKGNKW--WIDRR 64
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
+ VIG +T R D YRVDIGS PA L LAFEGATK+N P ++ G VV ++
Sbjct: 65 ATQ---ESVIGYITYRSQDMYRVDIGSAHPATLDALAFEGATKRNKPNLKVGAVVYARVS 121
Query: 112 TANKDMESEMVCVDSRG-KEFIMGILNDGYLLHTSISLCR---KLLNPKCPLLKQLAKRS 167
A+KDME E+ C D+ K G L DGY++ +++ CR LL+ LL L +
Sbjct: 122 LAHKDMEPELECFDAATHKSDGFGELKDGYIVSCNLATCRTSLSLLDRSHYLLPLLG--A 179
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
R +E++IG+NG++WI ++ +T+ LI C L EE ++ ES+ F+
Sbjct: 180 RVPLEIAIGVNGRVWISSDTPHNTI----LISRCIQLFDEEDVD--ESVMRNFIN 228
>gi|325192649|emb|CCA27072.1| exosome complex exonuclease RRP40 putative [Albugo laibachii Nc14]
Length = 277
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 121/212 (57%), Gaps = 14/212 (6%)
Query: 16 LGPGLRR---ESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
LG GL+ + I+ S GILR+ P Y++DY +RY+ + D VIG+V R + Y
Sbjct: 64 LGSGLKHIKEPHNRIVASNCGILRYRPPNRYWIDYDHKRYIASVDDSVIGIVIDRNAEFY 123
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC---VDSRGK 129
R++IGS + AVL LAF+GATK+N P ++ G +V +++ A D+E E+ C + +
Sbjct: 124 RLNIGSTNTAVLGTLAFDGATKRNRPNLQVGSLVYARVIKA--DVECELTCEAPANVNKR 181
Query: 130 EFIMGI-----LNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
+++ G+ L+ GY SI R+LL + + L R+ E++IG NG +W++
Sbjct: 182 DWMTGLSIYGELSGGYNFRVSIGFARQLLRAQDDSILHLLGRT-ISYEIAIGQNGIVWLQ 240
Query: 185 CESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
++ TV + N +++ E ++ ++ + +++
Sbjct: 241 SKANQHTVLLANALLNSECMTQAQVETMIQTL 272
>gi|68475021|ref|XP_718396.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|68475558|ref|XP_718127.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|46439883|gb|EAK99195.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|46440161|gb|EAK99470.1| likely exosome component Rrp40p [Candida albicans SC5314]
Length = 270
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 122/199 (61%), Gaps = 16/199 (8%)
Query: 1 MAGDTLSLNAE---PRLILGPGLRRE--SSAILVSQSGILRH--AKPFTYYVDYIQ---R 50
+ GD L ++ + + +GPG+ ++ + ++ S +GIL + AK + + YI+ +
Sbjct: 7 LPGDKLPIDEDIFTVKTTIGPGIYKKPKTQELIPSAAGILHYERAKSSSQQLIYIESNSK 66
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGK 109
RY+P D VIG++T +G++Y+V + S+ P +LS+ AF A+KKN P ++ G V +
Sbjct: 67 RYIPHTNDYVIGIITGAIGESYKVSLQSNSTPVLLSFWAFPNASKKNRPNLKNGQAVYAR 126
Query: 110 LLTANKDMESEMVCVD-SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKR 166
+ ++E+E+ C+D + GKE G+L++ GY+ ++ R+LL NPK L+ LA R
Sbjct: 127 VSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFARELLFNPKTIFLETLATR 186
Query: 167 SRQKMELSIGMNGKIWIRC 185
+ E++IG+NGKIWI+C
Sbjct: 187 CQ--FEIAIGINGKIWIKC 203
>gi|448079101|ref|XP_004194306.1| Piso0_004793 [Millerozyma farinosa CBS 7064]
gi|359375728|emb|CCE86310.1| Piso0_004793 [Millerozyma farinosa CBS 7064]
Length = 268
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 116/197 (58%), Gaps = 14/197 (7%)
Query: 1 MAGDTLSLN-AEPRLILGPGLRRE--SSAILVSQSGIL--RHAKPFTY---YVDYIQRRY 52
+ GD +++N E + GPG+ + + I+ + +G L R K T Y+D +RY
Sbjct: 11 IPGDDININLGESKTTAGPGIYKNPRNQEIIPTTAGYLNVRQNKANTQNLIYIDSNSKRY 70
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPA-VLSYLAFEGATKKNPPKVETGDVVAGKLL 111
+P DLVIG++T +G++Y+V + H +LS AF ATKKN P + G V ++
Sbjct: 71 IPQVNDLVIGIITGVLGESYKVQLQDHSTNLLLSMTAFPNATKKNRPNLRVGQAVYARVS 130
Query: 112 TANKDMESEMVCVD-SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSR 168
A+ ++++E+ C D + GK+ G+L++ GY+ +++ R LL N P L++LA R R
Sbjct: 131 QADPNIDAEVECFDATTGKDGGFGLLDESGYIFDVNLNFARDLLFNQNSPFLEKLATRCR 190
Query: 169 QKMELSIGMNGKIWIRC 185
E++IGMNGKIW++C
Sbjct: 191 --FEIAIGMNGKIWLKC 205
>gi|238879390|gb|EEQ43028.1| exosome complex exonuclease RRP40 [Candida albicans WO-1]
Length = 270
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 122/199 (61%), Gaps = 16/199 (8%)
Query: 1 MAGDTLSLNAE---PRLILGPGLRRE--SSAILVSQSGILRH--AKPFTYYVDYIQ---R 50
+ GD L ++ + + +GPG+ ++ + ++ S +GIL + AK + + YI+ +
Sbjct: 7 LPGDKLPIDEDISTVKTTIGPGIYKKPKTQELIPSAAGILHYERAKSSSQQLIYIESNSK 66
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGK 109
RY+P D VIG++T +G++Y+V + S+ P +LS+ AF A+KKN P ++ G V +
Sbjct: 67 RYIPHTNDYVIGIITGAIGESYKVSLQSNSTPVLLSFWAFPNASKKNRPNLKNGQAVYAR 126
Query: 110 LLTANKDMESEMVCVD-SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKR 166
+ ++E+E+ C+D + GKE G+L++ GY+ ++ R+LL NPK L+ LA R
Sbjct: 127 VSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFARELLFNPKTIFLETLATR 186
Query: 167 SRQKMELSIGMNGKIWIRC 185
+ E++IG+NGKIWI+C
Sbjct: 187 CQ--FEIAIGINGKIWIKC 203
>gi|395328697|gb|EJF61088.1| exosome complex exonuclease RRP40 [Dichomitus squalens LYAD-421
SS1]
Length = 230
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 9/196 (4%)
Query: 14 LILGPGLRRESSA-----ILVSQSGILRHAKPFT-YYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL R+SS ++ +++G + H + ++++ RRYVP + V+GVV R
Sbjct: 17 LKLGPGLLRQSSLNGQPLVISTRAGEVHHTTNRSRWWIEGNSRRYVPAPQESVVGVVVGR 76
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
G+N++VDIGS A L LAFEGATK+N P ++ G ++ ++ A+KDME E+ C D++
Sbjct: 77 SGENWKVDIGSSHTATLDGLAFEGATKRNRPNLKVGSLLFARVSLAHKDMEPELECFDAQ 136
Query: 128 GKEFI-MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
++ G L G+L+ S+ +CR LL+P L L SR +E +IGMNG++WI +
Sbjct: 137 TRKAEGHGELKGGFLVQCSLKMCRMLLDPNHFLFPLLG--SRFPLESAIGMNGRVWISAK 194
Query: 187 SFSDTVRVGNLIMSCE 202
+ + I + +
Sbjct: 195 DPRQVIAIARCIEAVD 210
>gi|406694980|gb|EKC98295.1| hypothetical protein A1Q2_07309 [Trichosporon asahii var. asahii
CBS 8904]
Length = 238
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 6/165 (3%)
Query: 39 KPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPP 98
K + ++ +RY+P + DLV+G + +R + YRVD+GS A L LAFEGATK++ P
Sbjct: 59 KSESVWISGKSKRYIPAQRDLVLGTIIARHAEGYRVDLGSAHMASLDALAFEGATKRSKP 118
Query: 99 KVETGDVVAGKLLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKC 157
++ G +V ++ AN+DME E+ CVD + GK G L G ++ S+ LCR +PK
Sbjct: 119 NLKVGTLVYARVTIANRDMEPEIECVDPATGKAEGFGELKGGLMVECSLQLCR---HPKH 175
Query: 158 PLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
PLL LA + E +IG+NG++W + E T+ + +I + +
Sbjct: 176 PLLPALA--AHIPFETAIGLNGRVWFKTEQVGQTIALRRVIEAVD 218
>gi|302839521|ref|XP_002951317.1| hypothetical protein VOLCADRAFT_61387 [Volvox carteri f.
nagariensis]
gi|300263292|gb|EFJ47493.1| hypothetical protein VOLCADRAFT_61387 [Volvox carteri f.
nagariensis]
Length = 224
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 121/205 (59%), Gaps = 3/205 (1%)
Query: 6 LSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVT 65
L + ++ L L GL A++ ++ GIL+ + Y++ Q+RY+P GD+V+GV+
Sbjct: 10 LEVPSQGTLRLSAGLTTHEGAVVSTKGGILKATRTGQLYLEGRQKRYIPVEGDVVVGVIV 69
Query: 66 SRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
+ +N+ VDIG AVL L+FEGAT++N P + GD+V +++ A++D + + CVD
Sbjct: 70 DKHSENFTVDIGGPFNAVLPQLSFEGATRRNRPNIHPGDLVYARVVQAHRDTDPVLSCVD 129
Query: 126 SRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
+ G+ G L G +L S +L R+LL +P P+L+ L S + E+++G+NG++W+
Sbjct: 130 AAGRAAGFGHLKGGMVLSISSALARQLLGSPTAPVLEALG--SGLQFEMAVGLNGRVWLT 187
Query: 185 CESFSDTVRVGNLIMSCELLSYEEI 209
+ + V V N I E + +++
Sbjct: 188 AGTAATCVLVANAISESEFKTPQQV 212
>gi|126274033|ref|XP_001387383.1| exosome complex component RRP40 [Scheffersomyces stipitis CBS 6054]
gi|126213253|gb|EAZ63360.1| Exosome complex exonuclease RRP40 (Ribosomal RNA processing protein
40) [Scheffersomyces stipitis CBS 6054]
Length = 260
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 123/198 (62%), Gaps = 15/198 (7%)
Query: 1 MAGDTLSLNAEP--RLILGPGLRR--ESSAILVSQSGIL--RHAKPFTYYVDYIQ---RR 51
+ GD L ++ + + +GPG+ + ++ +IL + +G++ + +K T + YI+ +R
Sbjct: 7 IPGDFLPIDTDSSIKTTIGPGIYKNPQTQSILPTNAGLINIQKSKAGTNQLVYIESNSKR 66
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKL 110
Y P D VIG+VT +G++Y+V + PAV LS +AF ATKKN P ++ G V ++
Sbjct: 67 YTPQTNDFVIGIVTGVIGESYKVQLQDFSPAVLLSMMAFPNATKKNRPNLKIGQAVYARV 126
Query: 111 LTANKDMESEMVCVD-SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRS 167
A ++E+E+ C+D + GKE G+L++ GY+ +++ R+LL N L++LA S
Sbjct: 127 SEAIPEIETELECIDPTTGKEGGFGLLDESGYIFEVNLNFARELLFNANSIFLEKLA--S 184
Query: 168 RQKMELSIGMNGKIWIRC 185
+ K E+++G+NGK+WI+C
Sbjct: 185 KCKFEIAVGINGKVWIKC 202
>gi|324520793|gb|ADY47712.1| Exosome complex exonuclease RRP40 [Ascaris suum]
Length = 232
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 135/229 (58%), Gaps = 11/229 (4%)
Query: 1 MAGDTLSLNA---EPRLILGPGLRRES---SAILVSQSGILRHAKPFTYYVDYIQRRYVP 54
+ GD + +++ + + ++G GL+ +S + I V Q G+L+ + Y RY+P
Sbjct: 6 LPGDLIEIDSKQDQEKKVIGRGLQCDSGDLTKIRVVQPGLLKSCGSKRWVAVY-SNRYIP 64
Query: 55 TRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
GD V+GVV + GD +VDIG+ D A +S+L FEGATK+N P ++TGD++ ++ A
Sbjct: 65 QEGDKVLGVVKASRGDLIKVDIGASDIASISFLGFEGATKRNRPVLKTGDLIYASVILAM 124
Query: 115 KDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMEL 173
+ +E+ + CVD+ G+ +G+L + G+L TS++L R+LL+P LL + K K E+
Sbjct: 125 RHLEATLTCVDNEGRAQGLGLLPSGGFLFKTSLNLARRLLSPSSRLLSLIGKEI--KFEI 182
Query: 174 SIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
+ GMNG+IWI+ ++ + +I+ + + +I + H+R L+
Sbjct: 183 TCGMNGRIWIKASKANEVAAIYRMIVGSQSIPESDIPTFIDE-HMRILK 230
>gi|428170248|gb|EKX39175.1| hypothetical protein GUITHDRAFT_76632, partial [Guillardia theta
CCMP2712]
Length = 204
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 116/199 (58%), Gaps = 9/199 (4%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKP---FTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
G G+ ++ ++ ++G LR +K ++D +RYVP DLVIG+V + ++Y
Sbjct: 6 FGCGISQDGENLVAIRAGQLRTSKTGIEMRMWIDSNTKRYVPVDEDLVIGIVVDKRTEDY 65
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
R+D+ VLS L+FEGATK+N PK+E G +V ++ + +D ESE+ C+ K+ +
Sbjct: 66 RLDVRGPSYGVLSALSFEGATKRNKPKLEIGSLVYCRVSNSYRDAESELSCLSLTYKKAV 125
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK-IWIRCESFSDT 191
G L G+++ TSI R LL P+ ++ L + E+++G NG+ IWI+ +S + T
Sbjct: 126 FGELEGGHMIETSIGYARSLLLPENVVVNCLGR--HLAYEIAVGCNGRVIWIKSDSVAKT 183
Query: 192 VRVGNLIMSCELLSYEEIL 210
+ + N I + E Y+E++
Sbjct: 184 ILIANAIRNAE---YDELI 199
>gi|321257555|ref|XP_003193629.1| hypothetical protein CGB_D5210W [Cryptococcus gattii WM276]
gi|317460099|gb|ADV21842.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 247
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 44 YVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETG 103
+++ +RY+P + D+V+G++ +R D YRVD+G A L LAFEGATK++ P ++ G
Sbjct: 70 WIEGNSKRYIPAQKDIVLGIIIARHADGYRVDLGCSQMAQLDALAFEGATKRSKPNLKVG 129
Query: 104 DVVAGKLLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
+V ++++A++DME E+ C D + GK G L G +++ ++ LCR+LL+ +L
Sbjct: 130 TLVFARVMSASRDMEPELECFDPNTGKSDGFGELKGGVMVNVTLQLCRRLLDRNHIVLPT 189
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMS 200
+A S E++IG+NG++W++ E+ +T+ + LI S
Sbjct: 190 IA--SVFPFEIAIGLNGRVWMKAETVGETLAMKRLIES 225
>gi|448083642|ref|XP_004195406.1| Piso0_004793 [Millerozyma farinosa CBS 7064]
gi|359376828|emb|CCE85211.1| Piso0_004793 [Millerozyma farinosa CBS 7064]
Length = 268
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 115/197 (58%), Gaps = 14/197 (7%)
Query: 1 MAGDTLSLN-AEPRLILGPGLRRE--SSAILVSQSGIL--RHAKPFTY---YVDYIQRRY 52
+ GD +++N E GPG+ + + I+ + +G L R K T Y+D +RY
Sbjct: 11 IPGDDVNINLGESTTTAGPGIYKNPRNQEIIPTTAGYLNVRQNKANTQNLIYIDSNSKRY 70
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPA-VLSYLAFEGATKKNPPKVETGDVVAGKLL 111
+P DLVIG++T +G++Y+V + H +LS AF ATKKN P + G V ++
Sbjct: 71 IPQVNDLVIGIITGVLGESYKVQLQDHSTNLLLSMTAFPNATKKNRPNLRVGQAVYARVS 130
Query: 112 TANKDMESEMVCVD-SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSR 168
A+ ++++E+ C D + GK+ G+L++ GY+ +++ R LL N P L++LA R
Sbjct: 131 QADPNIDAEVECFDPTTGKDGGFGLLDESGYIFDVNLNFARDLLFNQNSPFLEKLATRC- 189
Query: 169 QKMELSIGMNGKIWIRC 185
K E++IGMNGKIW++C
Sbjct: 190 -KFEIAIGMNGKIWLKC 205
>gi|241948127|ref|XP_002416786.1| exosome complex component RRP40 [Candida dubliniensis CD36]
gi|223640124|emb|CAX44370.1| exosome complex exonuclease subunit, putative [Candida dubliniensis
CD36]
Length = 285
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 120/202 (59%), Gaps = 19/202 (9%)
Query: 1 MAGDTLSLNAE---PRLILGPGLRRE--SSAILVSQSGILRHAKPFTY--------YVDY 47
+ GD L ++ + + +GPG+ ++ + ++ S +GIL + + + Y++
Sbjct: 7 LPGDKLPIDEDISTVKTTIGPGIYKKPKTQELIPSTAGILHYERTKSSSSSSQQLIYIES 66
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVV 106
+RY+P D VIGV+T +G++Y+V + ++ P +LS+ AF A+KKN P ++ G V
Sbjct: 67 NSKRYIPHTNDYVIGVITGAIGESYKVSLQAYSTPVLLSFWAFPNASKKNRPNLKNGQAV 126
Query: 107 AGKLLTANKDMESEMVCVD-SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQL 163
++ ++E+E+ C+D + GKE G+L++ GY+ ++ R+LL NPK L+ L
Sbjct: 127 YARVSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFARELLFNPKTIFLEML 186
Query: 164 AKRSRQKMELSIGMNGKIWIRC 185
A R + E++IG+NGKIWI+C
Sbjct: 187 ATRCQ--FEIAIGINGKIWIKC 206
>gi|260947378|ref|XP_002617986.1| hypothetical protein CLUG_01445 [Clavispora lusitaniae ATCC 42720]
gi|238847858|gb|EEQ37322.1| hypothetical protein CLUG_01445 [Clavispora lusitaniae ATCC 42720]
Length = 288
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 116/199 (58%), Gaps = 16/199 (8%)
Query: 1 MAGDTLS--LNAEPRLILGPGLRR--ESSAILVSQSGILRHAKPFT------YYVDYIQR 50
+ GD+L+ + + + +GPG+ + +S I+ SQ+GIL+ Y++ +
Sbjct: 23 LPGDSLASEVEGQAEITIGPGIYKYPKSHQIIPSQAGILKSTSASKKSNDKLLYIESNSK 82
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGK 109
RY+P DLVIG +T GD ++V + +H P LS +AF ATKKN P ++ V +
Sbjct: 83 RYIPQVNDLVIGYITGVYGDFFKVSLQNHSAPVQLSMMAFPNATKKNRPNLKVDQAVYAR 142
Query: 110 LLTANKDMESEMVCVDSR-GKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKR 166
+ A D+++E+ C D GKE G+L++ G++ +++ R+LL N C L++LA
Sbjct: 143 VSEALPDIDTEIECFDPETGKEGGFGLLDESGFIFDVNMNFARELLFNKSCIFLEKLA-- 200
Query: 167 SRQKMELSIGMNGKIWIRC 185
SR E++IG+NG++WI+C
Sbjct: 201 SRCSFEIAIGINGRVWIKC 219
>gi|402589068|gb|EJW83000.1| exosome complex exonuclease RRP40 [Wuchereria bancrofti]
Length = 206
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 19/178 (10%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEG----------------A 92
RRY+P +GD VIG+VTS G+ +++DIGS D A +S+L+FEG A
Sbjct: 5 SRRYIPQKGDRVIGIVTSTHGETFKIDIGSADIAFISFLSFEGLIAHLILHISTLLGSVA 64
Query: 93 TKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRK 151
T++N P ++ GD++ + TA K +E E+ CVD G+ MG+L + G+L TS++L R+
Sbjct: 65 TRRNRPNLKVGDLIYASVTTATKHLEPELTCVDGEGRARGMGLLPSGGFLFKTSLNLVRR 124
Query: 152 LLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
+L+P LL + K K E++ GMNG+IWI+ + + + V +I E + +I
Sbjct: 125 ILSPSSRLLSLIGK--DIKFEITSGMNGRIWIKGINVVEVIAVCRIIKESEFIPESDI 180
>gi|357610134|gb|EHJ66842.1| exosome complex exonuclease Rrp40 [Danaus plexippus]
Length = 122
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
GD+V K+L A+KDME E+VCVDS GK+ +G+L+DG+L S++L RK+LNP CPLL+
Sbjct: 2 GDIVYAKMLVASKDMEPELVCVDSHGKKGRLGVLSDGFLFKCSLNLVRKILNPSCPLLES 61
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
L ++ E++ GMNG+IWI+ S +T+ +GN I+ E S EEI +C +I
Sbjct: 62 L--KNEWPFEMAAGMNGRIWIKANSMRETIALGNAILGAEYQSDEEIKLICSNI 113
>gi|313240028|emb|CBY32387.1| unnamed protein product [Oikopleura dioica]
Length = 226
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 11/221 (4%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGD 58
+ G L L+ R+ GPGL+R +I V++SGI++ + ++ +RRY+P +GD
Sbjct: 7 LPGTQLGLDENIRI--GPGLKRNHYDGSIHVTESGIVKGMNNMAW-MEGARRRYIPVKGD 63
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
LV+GVVT + D RVDI + + A LS LAFE ATK+N + GD+V K+ A D+E
Sbjct: 64 LVLGVVTHKHPDYVRVDINAPELATLSTLAFESATKRNKIAINLGDLVFAKVSVALPDLE 123
Query: 119 SEMVCVDSR-GKEFIMGIL---NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
E+VC + R GK MG++ ++ + ++ R L+P+C +K + K E
Sbjct: 124 PEVVCCNMRTGKADGMGVIQPQSNSNSIVVNLQAARMALSPECAFVKAIGKHG--PFEWC 181
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCES 215
IG+NG++ I + T ++ + L+ +I L E+
Sbjct: 182 IGVNGRVLITTQKMKMTTQICRIFPLITFLTNNQIEGLVET 222
>gi|146422450|ref|XP_001487163.1| hypothetical protein PGUG_00540 [Meyerozyma guilliermondii ATCC
6260]
Length = 249
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 14/204 (6%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGIL-----RHAKPFTYYVDYIQRRYV 53
+ GD + N E + +GPG R+ + ++ +GI+ + YVD +RY+
Sbjct: 5 IPGDHIPPN-EVKTTIGPGFYRQPITDNVVPVSAGIVHDKINKQGTNRLLYVDSNSKRYI 63
Query: 54 PTRGDLVIGVVTSRVGDNYRVDI-GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P D VIG+VT +G+ Y+V + G +LS +AF A KKN P ++ G V ++
Sbjct: 64 PQVNDFVIGIVTGVIGEAYKVSLQGFSSSVLLSMMAFPNANKKNRPNLKNGQAVYARVTK 123
Query: 113 ANKDMESEMVCVDSRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A ++ESE+ C+DS GKE G+L++ G + ++ R LL + P+L++L+ S+ K
Sbjct: 124 AMSEIESEIECMDSSGKEGGFGVLSESGLIFEVNLHYARDLLFSHNSPILEKLS--SKCK 181
Query: 171 MELSIGMNGKIWIRC-ESFSDTVR 193
E++IG+NGKIWI+C E D V
Sbjct: 182 FEIAIGINGKIWIKCGEGLVDVVN 205
>gi|190344709|gb|EDK36442.2| hypothetical protein PGUG_00540 [Meyerozyma guilliermondii ATCC
6260]
Length = 249
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 14/204 (6%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGIL-----RHAKPFTYYVDYIQRRYV 53
+ GD + N E + +GPG R+ + ++ +GI+ + YVD +RY+
Sbjct: 5 IPGDHIPPN-EVKTTIGPGFYRQPITDNVVPVSAGIVHDKINKQGTNRLLYVDSNSKRYI 63
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P D VIG+VT +G+ Y+V + +V LS +AF A KKN P ++ G V ++
Sbjct: 64 PQVNDFVIGIVTGVIGEAYKVSLQGFSSSVSLSMMAFPNANKKNRPNLKNGQAVYARVTK 123
Query: 113 ANKDMESEMVCVDSRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A ++ESE+ C+DS GKE G+L++ G + ++ R LL + P+L++L+ S+ K
Sbjct: 124 AMSEIESEIECMDSSGKEGGFGVLSESGLIFEVNLHYARDLLFSHNSPILEKLS--SKCK 181
Query: 171 MELSIGMNGKIWIRC-ESFSDTVR 193
E++IG+NGKIWI+C E D V
Sbjct: 182 FEIAIGINGKIWIKCGEGLVDVVN 205
>gi|55773826|dbj|BAD72364.1| ALM beta-like [Oryza sativa Japonica Group]
gi|55773965|dbj|BAD72492.1| ALM beta-like [Oryza sativa Japonica Group]
Length = 537
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 82/138 (59%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+RY+P+ D V+GVV DN+ VD
Sbjct: 35 LGAGLRQDCDTIQATSAGRLRLSKPSKYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCRKLL 153
L DGY+ TS L R +
Sbjct: 155 LKDGYMFDTSTGLSRIIF 172
>gi|125528666|gb|EAY76780.1| hypothetical protein OsI_04736 [Oryza sativa Indica Group]
Length = 197
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 81/135 (60%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+RY+P+ D V+GVV DN+ VD
Sbjct: 35 LGAGLRQDCDTIQTTSAGRLRLSKPNKYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVD 94
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D+ GK G
Sbjct: 95 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQ 154
Query: 136 LNDGYLLHTSISLCR 150
L DGY+ TS L R
Sbjct: 155 LKDGYMFDTSTGLSR 169
>gi|348673532|gb|EGZ13351.1| hypothetical protein PHYSODRAFT_302978 [Phytophthora sojae]
Length = 434
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 11/206 (5%)
Query: 13 RLILGPGLRR-ESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
R+ LG GL++ I+ + +G+LR+ Y+V++ +RYV + D VIGVVT R +
Sbjct: 217 RVKLGAGLKQLPDERIVCTNAGVLRYRPANRYWVEFNHKRYVASMDDGVIGVVTDRNAEF 276
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG--- 128
YRV+IG+ A L LAF+GATK+N P + G +V ++ N D+E E+ C
Sbjct: 277 YRVNIGAAASATLGALAFDGATKRNRPSLRLGSLVYARVSKTNPDVEPEITCEAPPSVTR 336
Query: 129 KEFIMGI-----LNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
K+++ G+ LNDGY+ TSI L + LL+ C +L L K + E+++G+NG +W+
Sbjct: 337 KDWMTGLAIYGELNDGYVFKTSIGLAKSLLHEDCQVLASLGK--KLAFEVAVGVNGVVWV 394
Query: 184 RCESFSDTVRVGNLIMSCELLSYEEI 209
++ + + N IM+ E +S E+
Sbjct: 395 NAKTTKNITIISNAIMNSETMSPSEV 420
>gi|358254547|dbj|GAA55786.1| exosome complex component RRP40 [Clonorchis sinensis]
Length = 324
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
GD V+G+VT RVGDNY VDIG PA L+YLAFEGA+KKN P + GDV+ + A++D
Sbjct: 151 GDRVVGLVTRRVGDNYMVDIGCGSPATLNYLAFEGASKKNRPDLGPGDVLYAMVTQADRD 210
Query: 117 MESEMVCVDSRGKEFIMGILN--------------DGYLLHTSISLCRKLLNP-KCPLLK 161
++ E+ CVD G+ MGIL G +LH S L R+L + P L
Sbjct: 211 LDIELSCVDEAGRASGMGILGRQEPGTVGNAGGMKGGVMLHCSPGLVRQLADQDNFPFLT 270
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCE 214
L+K E+ +G NG+IW+ S +T + N I + + E L +
Sbjct: 271 LLSKVF--PFEVCLGANGRIWLTARSSRETTLLANAIAIADHIPQSECCKLAQ 321
>gi|313236852|emb|CBY12103.1| unnamed protein product [Oikopleura dioica]
Length = 226
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 11/221 (4%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGD 58
+ G L L+ R+ GPGL+R +I V++SGI++ + ++ +RRY+P +GD
Sbjct: 7 LPGTQLGLDENIRI--GPGLKRNHYDGSIHVTESGIVKGMNNMAW-MEGARRRYIPVKGD 63
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
LV+GVVT + D RVDI + + A LS LAFE ATK+N + GD+V K+ A D+E
Sbjct: 64 LVLGVVTHKHPDYVRVDINAPELATLSTLAFESATKRNKIAINLGDLVFAKVSVALPDLE 123
Query: 119 SEMVCVDSR-GKEFIMGIL---NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
E+VC + R GK MG++ ++ + ++ R L+P+C K + K E
Sbjct: 124 PEVVCCNMRTGKADGMGVIQPQSNSNSIVVNLQAARMALSPECAFGKAIGKHG--PFEWC 181
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCES 215
IG+NG++ I + T ++ + L+ +I L E+
Sbjct: 182 IGVNGRVLITTQKMKMTTQICRIFPLITFLTNNQIEGLVET 222
>gi|342320034|gb|EGU11977.1| Hypothetical Protein RTG_01857 [Rhodotorula glutinis ATCC 204091]
Length = 1494
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/200 (34%), Positives = 104/200 (52%), Gaps = 6/200 (3%)
Query: 3 GDTLSLNAEPRLILGPGLRR--ESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
G LS + P G G R E +A G L ++++ +RY P + V
Sbjct: 24 GPGLSTSTAPASRGGKGKERAVEPAATRAGLLGHLSQGDKERWWIEGTMKRYTPNPPEPV 83
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
+G++ +R + YRVDIGS A L LAFEGATK+N P ++ G +V LL+ E E
Sbjct: 84 LGIIVARHAEGYRVDIGSSQGASLDALAFEGATKRNKPNLKVGTLVYAHLLSTPPFSEPE 143
Query: 121 MVCVD-SRGKEFIMGILNDGYLLH-TSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN 178
+ CVD S K G L G+L+ + CR LL PK P+L +L +R E+++GMN
Sbjct: 144 ISCVDPSTQKASGFGELQGGFLIRGVELGRCRALLAPKNPVLSKLG--ARFPFEVAVGMN 201
Query: 179 GKIWIRCESFSDTVRVGNLI 198
G++W++ D ++ +I
Sbjct: 202 GRVWVKAAQEGDEEKLVEVI 221
>gi|336275563|ref|XP_003352535.1| hypothetical protein SMAC_01369 [Sordaria macrospora k-hell]
gi|380094424|emb|CCC07803.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 246
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 110/200 (55%), Gaps = 13/200 (6%)
Query: 14 LILGPGLRR-ESSAILVSQSG--ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGLR S I+ + +G ++ H K + +++Y RY+P++GDL+IG + D
Sbjct: 28 LRLGPGLRHIPPSEIVPTVAGQLVVDHRK-TSMWIEYNGGRYIPSQGDLIIGQIARSATD 86
Query: 71 NYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-G 128
Y V + + P A L +LAFE ATKK P+ +G++V ++ AN+ M+ E+ CV+S G
Sbjct: 87 FYYVSLSPYTPNATLPHLAFESATKKTRPQFASGELVYARVSLANRHMDPELECVNSSTG 146
Query: 129 KEFIMGILNDGYLLHTSISLCRKLL------NPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
K +G L DG + S+ R+LL K +L+ L + E ++G NGK+W
Sbjct: 147 KADGLGPLKDGMVFDVSLGFARRLLMAKSREEGKVEVLEALGEEG-LAFETAVGRNGKVW 205
Query: 183 IRCESFSDTVRVGNLIMSCE 202
+ ES TV VG + +
Sbjct: 206 VGSESVKTTVAVGRALKETD 225
>gi|256070166|ref|XP_002571415.1| mitochondrial carrier protein [Schistosoma mansoni]
gi|350645049|emb|CCD60231.1| mitochondrial carrier protein-related [Schistosoma mansoni]
Length = 645
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 17/174 (9%)
Query: 58 DLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDM 117
D VIGVV + G+++ VDIG PA+L+YL+FEG++KKN P + GDV+ + A++D+
Sbjct: 473 DKVIGVVMKKAGESFVVDIGCASPAILNYLSFEGSSKKNRPDIHAGDVLYAMITRADRDL 532
Query: 118 ESEMVCVDSRGKEFIMGIL--------------NDGYLLHTSISLCRKLLNP-KCPLLKQ 162
E E+ CVD GK MGIL + G LLH + L R+L N + PLLK
Sbjct: 533 EIELSCVDEAGKACGMGILGRHEPGTVGNAGGRSGGILLHCTQDLVRRLCNQDEFPLLKL 592
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
L+K E+ +G NG+IW+ S + + + N I E +S E L + +
Sbjct: 593 LSK--VYPFEIFLGANGRIWLTAGSAREIMILANAIAIAEHISASECCQLAKEL 644
>gi|238581443|ref|XP_002389610.1| hypothetical protein MPER_11234 [Moniliophthora perniciosa FA553]
gi|215452066|gb|EEB90540.1| hypothetical protein MPER_11234 [Moniliophthora perniciosa FA553]
Length = 206
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 45 VDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGD 104
VD+ ++ YVP + VIGV++ R G+ YRVDIGS A L LAFEGA+K+N P ++ G
Sbjct: 30 VDFERKTYVPAAQEPVIGVISQRQGEGYRVDIGSAHSANLDGLAFEGASKRNKPNLKVGC 89
Query: 105 VVAGKLLTANKDMESEMVCVDSRG-KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQL 163
+V ++ A+KDME E+ C D++ K G L G+L+ S+ +CR+LL+ LL L
Sbjct: 90 LVYARVSLAHKDMEPELECFDAQTHKAEGFGELKGGFLVRCSMRMCRQLLDSNHFLLPLL 149
Query: 164 AKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
+ +E++IG+NG++W+ + + +
Sbjct: 150 G--AMFPLEVAIGLNGRVWVNSKEAKQIIAI 178
>gi|255730389|ref|XP_002550119.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132076|gb|EER31634.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 270
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 12/183 (6%)
Query: 13 RLILGPGLRRE--SSAILVSQSGILRHAKPFT-----YYVDYIQRRYVPTRGDLVIGVVT 65
+ +GPG+ ++ + ++ S SGI + Y++ +RY+P D VIG++
Sbjct: 22 KTTIGPGIYKKPKTQELIPSTSGIFHKISNNSKNSQLIYIESNSKRYIPHNNDFVIGLII 81
Query: 66 SRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV 124
+G+NY+V + ++ P +L + +F A+KKN P ++ GD+V G+++ ++++EM C+
Sbjct: 82 GTIGENYKVSLQANSIPILLGFYSFVNASKKNRPILKNGDLVYGRIINDIIEIDNEMECI 141
Query: 125 DSRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
DS GKE G+L+D G+L +++ R+LL N L+ LA + K E++IG+NGKIW
Sbjct: 142 DSSGKESGFGLLDDSGFLFDVNMNFARELLFNKNSIFLELLALKC--KFEIAIGINGKIW 199
Query: 183 IRC 185
I+C
Sbjct: 200 IKC 202
>gi|448520110|ref|XP_003868225.1| hypothetical protein CORT_0B10890 [Candida orthopsilosis Co 90-125]
gi|380352564|emb|CCG22790.1| hypothetical protein CORT_0B10890 [Candida orthopsilosis]
Length = 291
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 117/201 (58%), Gaps = 18/201 (8%)
Query: 1 MAGDTLSLN--AEPRLILGPGLRRE--SSAILVSQSGILR-----HAKPFTYYVDYIQRR 51
+ GD L + + + +GPG+ +E S ++ S +GIL Y++ +R
Sbjct: 6 VPGDKLPIEDPSSTKTKIGPGIYKEPKSQNLIPSTAGILHINQNQQQNSQLVYIESNTKR 65
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKL 110
Y+P D VIG VT +GD Y+V + ++ +V LS++AF A++KN P + G VV ++
Sbjct: 66 YIPHNNDFVIGTVTGSIGDYYKVSLQNYSSSVLLSFMAFPNASRKNRPNLTNGQVVYARV 125
Query: 111 LTANKD--MESEMVCVD-SRGKEF-IMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLA 164
+ + D E+E+ C D S +E GIL+D G++ +++ R+LL N K P+L+ LA
Sbjct: 126 VNDDNDSTFETELECFDGSNNRESGGFGILDDSGFVFDVAMNFARELLYNSKSPVLELLA 185
Query: 165 KRSRQKMELSIGMNGKIWIRC 185
+R + E+++G+NGKIW++C
Sbjct: 186 --TRVQFEIAVGINGKIWLKC 204
>gi|85074931|ref|XP_965833.1| hypothetical protein NCU00693 [Neurospora crassa OR74A]
gi|28927646|gb|EAA36597.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 246
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 110/200 (55%), Gaps = 13/200 (6%)
Query: 14 LILGPGLRR-ESSAILVSQSG--ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGLR S I+ + +G ++ H K + +++Y RY+P++GDL+IG + D
Sbjct: 28 LRLGPGLRHIPPSEIVPTVAGQLVVDHRK-TSMWIEYNGGRYIPSQGDLIIGQIARSATD 86
Query: 71 NYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-G 128
Y V + + P A L +LAFE ATKK P++ +G++V ++ AN+ M+ E+ CV+S G
Sbjct: 87 FYYVSLSPYTPNATLPHLAFESATKKTRPQLASGELVYARVSLANRHMDPELECVNSSTG 146
Query: 129 KEFIMGILNDGYLLHTSISLCRKLL------NPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
K +G L DG + S+ R+LL K +L+ L + E ++G NGK+W
Sbjct: 147 KADGLGPLKDGMVFDVSLGFARRLLMAKSREEGKVEVLEALGEEG-LAFETAVGRNGKVW 205
Query: 183 IRCESFSDTVRVGNLIMSCE 202
+ ES V VG + +
Sbjct: 206 VGSESVKTAVMVGRALRETD 225
>gi|350295735|gb|EGZ76712.1| hypothetical protein NEUTE2DRAFT_77442 [Neurospora tetrasperma FGSC
2509]
Length = 246
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 110/200 (55%), Gaps = 13/200 (6%)
Query: 14 LILGPGLRR-ESSAILVSQSG--ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGLR S I+ + +G ++ H K + +++Y RY+P++GDL+IG + D
Sbjct: 28 LRLGPGLRHIPPSEIVPTVAGQLVVDHRK-TSMWIEYNGGRYIPSQGDLIIGQIARSATD 86
Query: 71 NYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-G 128
Y V + + P A L +LAFE ATKK P++ +G++V ++ AN+ M+ E+ CV+S G
Sbjct: 87 FYYVSLSPYTPNATLPHLAFESATKKTRPQLASGELVYARVSLANRHMDPELECVNSSTG 146
Query: 129 KEFIMGILNDGYLLHTSISLCRKLL------NPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
K +G L DG + S+ R+LL K +L+ L + E ++G NGK+W
Sbjct: 147 KADGLGPLKDGMVFDVSLGFARRLLMAKSREEGKVEVLEALGEEG-LAFETAVGRNGKVW 205
Query: 183 IRCESFSDTVRVGNLIMSCE 202
+ ES V VG + +
Sbjct: 206 VGSESVKTVVVVGRALRETD 225
>gi|359807517|ref|NP_001241402.1| uncharacterized protein LOC100809941 [Glycine max]
gi|255636017|gb|ACU18353.1| unknown [Glycine max]
Length = 179
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ AI V ++G LR +KP Y+V+ Q+RYVP D V+G+V DN+ VD
Sbjct: 36 LGGGLRQDCDAISVMKAGRLRFSKPHKYWVENSQKRYVPYAEDSVLGIVVDSRSDNFLVD 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A L LAFEG T++N P+ E G ++ +++ AN M E+ C D+ GK G
Sbjct: 96 IKGPTLAFLPVLAFEGGTRRNIPRFEIGTLIYVRVIKANPGMNPELSCTDASGKAAEFGA 155
Query: 136 LNDGYLLHTSISL 148
L DGY+ +
Sbjct: 156 LKDGYMFECTTGF 168
>gi|310791070|gb|EFQ26599.1| exosome complex exonuclease RRP40 [Glomerella graminicola M1.001]
Length = 242
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 8/196 (4%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR I+ + +G ++ K + +V+ RY+PT GDLVIG V +
Sbjct: 27 LRLGPGLRHVPPRQIVPTIAGKLVSDRKKNSIWVEQTSGRYIPTVGDLVIGTVQRTAAEL 86
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV-DSRGK 129
Y V + + PA+L L+FE ATKK P++ +G +V ++ ANK M+ E+ CV S GK
Sbjct: 87 YYVLLADYSTPAILPQLSFEMATKKTRPQLASGALVYARVTLANKHMDPELECVYQSTGK 146
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCP---LLKQLAKRSRQKMELSIGMNGKIWIRCE 186
+G L G L + S+ + R+LL PK +L++L + E ++G NGKIW+ E
Sbjct: 147 ADGLGPLVGGMLFNISLGMARRLLKPKTTDLVVLEELGA-TGAAFETAVGRNGKIWVNSE 205
Query: 187 SFSDTVRVGNLIMSCE 202
S + VG I +
Sbjct: 206 SAKTIIAVGRAIQETD 221
>gi|67469469|ref|XP_650713.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56467363|gb|EAL45326.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 233
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 109/202 (53%), Gaps = 7/202 (3%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQ-RRYVPTRGDL 59
GDT R G G+ + + VS++GIL++ + YY + ++Y P+ D+
Sbjct: 14 FPGDTFEYVQGARF--GDGIIKRNGVPTVSRAGILKYQQQTKYYHVFSDLKKYHPSVEDV 71
Query: 60 VIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
+G + RV D Y VDIGS+ A L +LAFE ATKK+ P + GD V ++++ K+
Sbjct: 72 CVGKIVKRVKDKYLVDIGSYCYAELDFLAFENATKKSKPNLLDGDYVYCRVVS--KENVP 129
Query: 120 EMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG 179
++VCV R E G L G+ S+CR+++ C +L + + + E+++G+NG
Sbjct: 130 QVVCVSQRKMEDGFGELQGGWAFSVPQSMCRRIMGDGCCVLTCIGEYT--PFEIAVGING 187
Query: 180 KIWIRCESFSDTVRVGNLIMSC 201
+W+R + + V V + I+ C
Sbjct: 188 MVWVRTPNVLNDVIVESCIVQC 209
>gi|449703223|gb|EMD43711.1| exosome complex exonuclease RRP40, putative [Entamoeba histolytica
KU27]
Length = 233
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 109/202 (53%), Gaps = 7/202 (3%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQ-RRYVPTRGDL 59
GDT R G G+ + + VS++GIL++ + YY + ++Y P+ D+
Sbjct: 14 FPGDTFEYVQGARF--GDGIIKRNGVPTVSRAGILKYQQQTKYYHVFSDLKKYHPSVEDV 71
Query: 60 VIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
+G + RV D Y VDIGS+ A L +LAFE ATKK+ P + GD V ++++ K+
Sbjct: 72 CVGKIVKRVKDKYLVDIGSYCYAELDFLAFENATKKSKPNLLDGDYVYCRVVS--KENVP 129
Query: 120 EMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG 179
++VCV R E G L G+ S+CR+++ C +L + + + E+++G+NG
Sbjct: 130 QVVCVSQRKMEDGFGELQGGWAFSVPQSMCRRIMGDGCCVLTCIGEYT--PFEIAVGING 187
Query: 180 KIWIRCESFSDTVRVGNLIMSC 201
+W+R + + V V + I+ C
Sbjct: 188 MVWVRTPNVLNDVIVESCIVQC 209
>gi|336463671|gb|EGO51911.1| hypothetical protein NEUTE1DRAFT_149573 [Neurospora tetrasperma
FGSC 2508]
Length = 246
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 13/200 (6%)
Query: 14 LILGPGLRR-ESSAILVSQSG--ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGLR S I+ + +G ++ H K + +++Y RY+P++GDL+IG + D
Sbjct: 28 LRLGPGLRHIPPSEIVPTVAGQLVVDHRK-TSMWIEYNGGRYIPSKGDLIIGQIARSATD 86
Query: 71 NYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-G 128
Y V + + P A L +LAFE ATKK P++ +G++V ++ AN+ M+ E+ CV+S G
Sbjct: 87 FYYVSLSPYTPNATLPHLAFESATKKTRPQLASGELVYARVSLANRHMDPELECVNSSTG 146
Query: 129 KEFIMGILNDGYLLHTSISLCRKLL------NPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
+ +G L DG + S+ R+LL K +L+ L + E ++G NGK+W
Sbjct: 147 EADGLGPLKDGMVFDVSLGFARRLLMAKSREEGKVEVLEALGEEG-LAFETAVGRNGKVW 205
Query: 183 IRCESFSDTVRVGNLIMSCE 202
+ ES V VG + +
Sbjct: 206 VGSESVKTVVVVGRALRETD 225
>gi|336369949|gb|EGN98290.1| hypothetical protein SERLA73DRAFT_91563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382710|gb|EGO23860.1| hypothetical protein SERLADRAFT_450152 [Serpula lacrymans var.
lacrymans S7.9]
Length = 230
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 112/188 (59%), Gaps = 9/188 (4%)
Query: 14 LILGPGL-----RRESSAILVSQSGILRHA-KPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
L LGPGL ++ S ++ +++G L H+ ++V+ RRYVP + V+GVV R
Sbjct: 17 LKLGPGLLQIPSTQKESPVIATRAGNLEHSVNRSKWWVESNARRYVPAAQESVVGVVVGR 76
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
G+ +RVDIGS A L LAFEGATK+N P ++ G +V ++ A+KDME E+ C D++
Sbjct: 77 SGEGWRVDIGSAHSASLDGLAFEGATKRNRPNLKVGSLVYARVSLAHKDMEPELECFDAQ 136
Query: 128 G-KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
K G L G+++ S+ + R LL+PK LL L +R +E ++G+NGK+WI +
Sbjct: 137 SRKSEGFGELKGGFVVSCSLRMSRILLDPKHFLLPLLG--ARFPLEAAVGVNGKVWISTK 194
Query: 187 SFSDTVRV 194
T+ V
Sbjct: 195 DPRQTIAV 202
>gi|50511939|ref|NP_001002269.1| exosome complex component RRP40 isoform 2 [Homo sapiens]
gi|158260165|dbj|BAF82260.1| unnamed protein product [Homo sapiens]
Length = 164
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 10/107 (9%)
Query: 6 LSLNAEP----RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQA 159
>gi|429861879|gb|ELA36543.1| exosome complex exonuclease rrp40 [Colletotrichum gloeosporioides
Nara gc5]
Length = 242
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 8/196 (4%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR I+ + +G ++ K + +V+ RY+P GDLV+G V +
Sbjct: 27 LRLGPGLRHVPPRQIVPTIAGKLVTDRKKNSIWVEQTGGRYIPAVGDLVVGTVQRSASEI 86
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV-DSRGK 129
Y V + + PA+L LAFE A+KKN P +++G +V ++ ANK M+ E+ CV S GK
Sbjct: 87 YYVLLADYSTPAILPQLAFEMASKKNRPHLDSGALVYARVTLANKHMDPELECVYQSTGK 146
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCP---LLKQLAKRSRQKMELSIGMNGKIWIRCE 186
+G L G L + S+ + R+LL+PK +L++L + E ++G NGKIW+ E
Sbjct: 147 ADGLGPLVGGMLFNISLGMARRLLSPKTTDLVVLEELGA-TGAAFETAVGRNGKIWVNSE 205
Query: 187 SFSDTVRVGNLIMSCE 202
S + VG I +
Sbjct: 206 SIKVIIAVGRAIQETD 221
>gi|426361819|ref|XP_004048095.1| PREDICTED: exosome complex component RRP40 isoform 2 [Gorilla
gorilla gorilla]
Length = 164
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 10/107 (9%)
Query: 6 LSLNAEP----RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQA 159
>gi|114624604|ref|XP_001170234.1| PREDICTED: exosome complex component RRP40 isoform 1 [Pan
troglodytes]
gi|332831951|ref|XP_003312141.1| PREDICTED: exosome complex component RRP40 [Pan troglodytes]
Length = 164
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 10/107 (9%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSEGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQA 159
>gi|397466872|ref|XP_003805165.1| PREDICTED: exosome complex component RRP40 isoform 2 [Pan paniscus]
Length = 164
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 10/107 (9%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQA 159
>gi|167389389|ref|XP_001738942.1| exosome complex exonuclease RRP40 [Entamoeba dispar SAW760]
gi|165897609|gb|EDR24707.1| exosome complex exonuclease RRP40, putative [Entamoeba dispar
SAW760]
Length = 233
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 106/187 (56%), Gaps = 5/187 (2%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQ-RRYVPTRGDLVIGVVTSRVGDNYRV 74
G G+ + + +S++GIL++ + YY + ++Y P+ D+ +G + RV D Y V
Sbjct: 27 FGDGIIKRNGVPTISRAGILKYQQQTKYYHVFSDLKKYHPSIEDVCVGKIVKRVKDKYLV 86
Query: 75 DIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMG 134
DIGS+ A L +LAFE ATKK+ P + GD V ++++ K+ ++VCV R E G
Sbjct: 87 DIGSYCYAELDFLAFENATKKSKPNLLDGDYVYCRVVS--KEKVPQVVCVSQRKMEDGFG 144
Query: 135 ILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L G+ S+CR++++ C +L + + + E+++G+NG +W+R + + V V
Sbjct: 145 ELQGGWAFSVPQSMCRRIMSDGCCVLTCIGQYT--PFEIAVGVNGMVWVRTPNVLNDVIV 202
Query: 195 GNLIMSC 201
+ I+ C
Sbjct: 203 ESCILQC 209
>gi|388581015|gb|EIM21326.1| hypothetical protein WALSEDRAFT_18961, partial [Wallemia sebi CBS
633.66]
Length = 171
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
+Y+ GD VIG V R + YRVDIG+ A L LAFEGATK+N P ++ G +V ++
Sbjct: 1 QYLARTGDSVIGQVIFRGSEGYRVDIGTATTANLDALAFEGATKRNKPNLKVGSLVYARI 60
Query: 111 LTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHT-SISLCRKLLNPKCPLLKQLAKRSR 168
A+KDME+E+ C++ + GK G L G L I+ C+ LL P + L +
Sbjct: 61 SLAHKDMETELECLNPTTGKAEGYGELKGGILADNLDINKCKSLLEKNSPFMNTLMQGFG 120
Query: 169 QKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
EL+ MNGKIWI S S T+ V IM +
Sbjct: 121 FPFELATAMNGKIWISAPSTSQTISVYRTIMKAD 154
>gi|441622246|ref|XP_004088824.1| PREDICTED: exosome complex component RRP40 [Nomascus leucogenys]
Length = 164
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 10/107 (9%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNAGARPRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQA 159
>gi|344232284|gb|EGV64163.1| hypothetical protein CANTEDRAFT_114211 [Candida tenuis ATCC 10573]
Length = 247
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 115/194 (59%), Gaps = 14/194 (7%)
Query: 3 GDTLSLNAEPRLILGPGLRR--ESSAILVSQSGIL--RHAKPFTYYVDYIQ---RRYVPT 55
GD L + + + +GPG+ + ++ I+ + +G L + K T + YI+ +RY+P
Sbjct: 6 GDALDIQ-QMKTTIGPGVYKNPKTQNIIPAAAGYLNVKINKKNTNQLAYIESKSKRYIPK 64
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
D V+G+VT +G++Y+V + V LS +AF ATKKN P ++ G VV ++
Sbjct: 65 ANDFVVGIVTGTIGESYKVSLQDFSANVLLSMMAFPNATKKNRPNLKVGQVVYARVSQDI 124
Query: 115 KDMESEMVCVD-SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKM 171
+++ E+ C+D + GKE G+L++ GY+ ++ +LL NP L++LA S+ K
Sbjct: 125 PEIDIEIECIDPATGKEGGFGMLDESGYIFEVGLNYANELLFNPSSVYLEKLA--SKCKF 182
Query: 172 ELSIGMNGKIWIRC 185
E++IG+NGKIWI+C
Sbjct: 183 EVAIGLNGKIWIKC 196
>gi|380493544|emb|CCF33800.1| exosome complex exonuclease RRP40 [Colletotrichum higginsianum]
Length = 242
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 8/196 (4%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR I+ + +G ++ K + +V+ RY+P GDLVIG + +
Sbjct: 27 LRLGPGLRHVPPRQIVPTIAGKLVSDRKKNSIWVEQTSGRYIPAAGDLVIGTIQRTAAEL 86
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV-DSRGK 129
Y V + + PA L LAFE ATKK+ P++ +G +V ++ ANK M+ E+ CV S GK
Sbjct: 87 YYVLLADYSTPATLPQLAFEMATKKSRPQLASGALVYARVTLANKHMDPELECVYQSTGK 146
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCP---LLKQLAKRSRQKMELSIGMNGKIWIRCE 186
+G L G L S+ + R+LL PK +L++L + E ++G NGKIW+ E
Sbjct: 147 ADGLGPLVGGMLFDISLGMARRLLKPKTTDLVVLEELGA-TGAAFETAVGRNGKIWVNSE 205
Query: 187 SFSDTVRVGNLIMSCE 202
S + VG I +
Sbjct: 206 SVKIIIAVGRAIQETD 221
>gi|452987317|gb|EME87073.1| hypothetical protein MYCFIDRAFT_86501 [Pseudocercospora fijiensis
CIRAD86]
Length = 240
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 10/212 (4%)
Query: 4 DTLSLNAEPRLILGPGLRR-ESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVI 61
D L + + L LGP LR S IL + SG L K ++++ RYVP GDLVI
Sbjct: 14 DQLPKSKKGTLTLGPHLRHIPPSTILSTTSGTLHTDHKKSAIWIEHENGRYVPAVGDLVI 73
Query: 62 GVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
V D + + H AVL LAFEGA+KK P++++GD+V ++ ++K E+E
Sbjct: 74 AQVHHGSTDYFHCALTPHTAYAVLGQLAFEGASKKTRPQLKSGDLVYARVCRSSKWEETE 133
Query: 121 MVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLL----NPKCPLLKQLAKRSRQKMELSI 175
+ CV+S GK MG L+ G L S R+L+ +L ++ ++ K E+++
Sbjct: 134 IECVNSNTGKAEGMGPLSGGMLFDISPGFARRLMLGAKKGGIGILDEVGEKV--KFEVAV 191
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYE 207
G NGK+W+ S +TV +G L+ C+ ++
Sbjct: 192 GRNGKVWVDSGSVRETVVIGRLLKMCDEEGWD 223
>gi|385305281|gb|EIF49269.1| rrp40p [Dekkera bruxellensis AWRI1499]
Length = 236
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 5/170 (2%)
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVE 101
YYV+ +RY+P GD VIGV+ GD YRV + P VL+ +F A+ KN P++E
Sbjct: 49 YYVEANSKRYLPESGDNVIGVIIGSFGDFYRVSLNDFSVPVVLNQFSFPNASXKNRPRLE 108
Query: 102 TGDVVAGKLLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPL 159
GD++ ++ + N ++++E+ CVD + GK G L G + ++ R LL +P +
Sbjct: 109 VGDLIYARVESVNPNVDAEISCVDPTTGKAEGYGKLEGGMVFKVKLAYARNLLFDPNAHI 168
Query: 160 LKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
L +L ++ K E++IG+NGKIW++ + T G I + S +I
Sbjct: 169 LTELV--TKCKFEIAIGVNGKIWLKTDDIHSTXACGRCIEKSQQWSDADI 216
>gi|219119212|ref|XP_002180371.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407844|gb|EEC47779.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 240
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 23/222 (10%)
Query: 16 LGPGLRRESSA--ILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVG---- 69
LG GLR E S + + +G L H YYV +RY P D V+G+V RVG
Sbjct: 2 LGTGLRYEESTRQVFATAAGRL-HNFHRVYYVLQDLQRYRPALEDRVVGIVEDRVGSDGA 60
Query: 70 --DNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL--LTANKDMESEMVCV- 124
D YRV++G+ PA+LS L+FEGA+K+N P ++ G ++ ++ L + ++ E+ CV
Sbjct: 61 GGDIYRVNLGAAHPALLSSLSFEGASKRNKPHLQPGQLLYARVAALHTSGALDPELSCVL 120
Query: 125 ----------DSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
D E G L G S L R+LL P +L +L+K ++ E++
Sbjct: 121 GPHDQGVPRRDWMTNEGCYGELKGGKTCRVSTGLARELLQPDNVVLAELSK-AKLSFEVA 179
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
+G+NG +WI S T+ + N I + +L+ E++ + S+
Sbjct: 180 VGVNGFLWIHSHSPEYTILIQNAIQNSAVLTEEQVRGMVRSL 221
>gi|346325578|gb|EGX95175.1| exosome complex exonuclease RRP40 [Cordyceps militaris CM01]
Length = 245
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 108/212 (50%), Gaps = 14/212 (6%)
Query: 4 DTLSLNAEPR--LILGPGLRRE--SSAILVSQSGILRHAKPFTYY-VDYIQRRYVPTRGD 58
D + P+ L LGPGLR + ++AIL + +G L +P V+ RY+P G+
Sbjct: 14 DDAQIPTHPKKPLRLGPGLRHDPFTNAILPTIAGQLVSDRPKNALRVETSTGRYLPRAGE 73
Query: 59 LVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDM 117
LVIG V D Y V + H PA L LAFEGATKK P++ G +V ++ A++ M
Sbjct: 74 LVIGTVQKSAADVYYVQLSDHAAPATLPQLAFEGATKKTRPQLAPGALVYARITLADRHM 133
Query: 118 ESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP------LLKQLAKRSRQK 170
++E+ CV S GK +G L G L S+ + R+L+ P +L+ LA Q
Sbjct: 134 DAELECVSASTGKADGLGPLTGGMLFAVSLGMARRLMMPGGAAASGVVVLEGLAAGGWQ- 192
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
E + G NGK+W+ S + VG + +
Sbjct: 193 FETATGRNGKVWVDAGSARTVMAVGRAVQETD 224
>gi|453080068|gb|EMF08120.1| hypothetical protein SEPMUDRAFT_94870 [Mycosphaerella populorum
SO2202]
Length = 242
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 11/219 (5%)
Query: 1 MAGDTLSLNAEPR-----LILGPGLRR-ESSAILVSQSGILR-HAKPFTYYVDYIQRRYV 53
+ GDT+ + P+ L LGP LR S +L + SG L+ K ++++ RY+
Sbjct: 8 LPGDTIPPSLLPKSKKGTLTLGPHLRHLPPSTLLSTTSGTLQIDPKKSALWLEHPNGRYI 67
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P DLVI V D + + H P A+L +LAFEGA KK P++++GD+V ++
Sbjct: 68 PAVNDLVIAQVHHGSTDTFHCSLTPHTPYALLGHLAFEGANKKTRPQLKSGDLVYARVAK 127
Query: 113 ANKDMESEMVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLL--NPKCPLLKQLAKRSRQ 169
+K ++E+ CV+S GK MG L G + S R+L+ K ++ +
Sbjct: 128 VSKWEDTEIECVNSNTGKGEGMGPLTGGMVFDVSAGFARRLMLGAKKGGVVILDVVGEKV 187
Query: 170 KMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
K E+++G NG++WI S +TV +G L+++ + ++E
Sbjct: 188 KFEVAVGRNGRVWIDSASVRETVTIGRLLVAADEAGWDE 226
>gi|354544222|emb|CCE40945.1| hypothetical protein CPAR2_109830 [Candida parapsilosis]
Length = 302
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 111/188 (59%), Gaps = 21/188 (11%)
Query: 16 LGPGLRRE--SSAILVSQSGILRHAKPFTY--------YVDYIQRRYVPTRGDLVIGVVT 65
+GPG+ +E S ++ S +GIL H T Y++ +RY+P D VIG +T
Sbjct: 25 IGPGVYKEPKSQNLIPSTAGIL-HIDQRTQQQQQQQLLYIESNTKRYIPQNNDFVIGTIT 83
Query: 66 SRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTANKD--MESEMV 122
+GD Y+V + ++ P V LS+++F A++KN P + G VV +++ + D E+E+
Sbjct: 84 GSMGDYYKVSLQNYSPPVLLSFMSFPNASRKNRPNLNVGQVVYARVVNDDNDSTFETELE 143
Query: 123 CVDSRGKEFI--MGILND-GYLL-HTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGM 177
C D+ GIL+D G+++ +++ R+LL NPK +L+ LA +R + E+++G+
Sbjct: 144 CFDASNNRESGGFGILDDSGFVIDDVAMNFARELLFNPKSLVLEVLA--TRVQFEIAVGI 201
Query: 178 NGKIWIRC 185
NG+IWI+C
Sbjct: 202 NGRIWIKC 209
>gi|56758880|gb|AAW27580.1| SJCHGC05501 protein [Schistosoma japonicum]
Length = 324
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 17/174 (9%)
Query: 58 DLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDM 117
D VIG+V + G+ + VDIG PA L+YL+FEG++KKN P + GDV+ + A++D+
Sbjct: 152 DKVIGIVLKKAGELFVVDIGCASPATLNYLSFEGSSKKNRPDIHAGDVLYAMITRADRDL 211
Query: 118 ESEMVCVDSRGKEFIMGILN--------------DGYLLHTSISLCRKLLNP-KCPLLKQ 162
E E+ CVD GK MGIL G LL+ + L R+L N + PLLK
Sbjct: 212 EIELSCVDETGKACGMGILGRHEPGTVGNAGGRPGGVLLYCTQDLIRRLGNQDEFPLLKL 271
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
L+K E+ G NG+IW+ S +T+ + N I E + E L + +
Sbjct: 272 LSK--VYPFEIFFGANGRIWLTSGSTRETMILANAIAISEHIPASECCKLAKEL 323
>gi|50421149|ref|XP_459120.1| exosome complex component RRP40 [Debaryomyces hansenii CBS767]
gi|49654787|emb|CAG87289.1| DEHA2D14718p [Debaryomyces hansenii CBS767]
Length = 259
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 108/184 (58%), Gaps = 13/184 (7%)
Query: 13 RLILGPGLRR--ESSAILVSQSGIL-----RHAKPFTYYVDYIQRRYVPTRGDLVIGVVT 65
+ +GPG+ + ++ I+ + +GIL + + D +RY+P D VIG++
Sbjct: 20 KTTIGPGIYKNPQTQEIIPASAGILNVKTNKQNTNTVIFTDSNSKRYIPQTNDFVIGIIV 79
Query: 66 SRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV 124
G++Y+V + +V LS +AF A+KKN P ++ G V ++ A ++++E+ C+
Sbjct: 80 GVFGESYKVQLQDFSTSVQLSMMAFPNASKKNRPNLKIGQAVYARVSQAIPEIDTELECI 139
Query: 125 DS-RGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKI 181
D GKE G+L++ GY+ + +++ R+LL N L++L+ ++ K E++IG+NGK+
Sbjct: 140 DPITGKEGGFGLLDESGYIFNINLNFARELLFNQSSVFLEKLS--TKCKFEIAIGINGKV 197
Query: 182 WIRC 185
W++C
Sbjct: 198 WLKC 201
>gi|443894214|dbj|GAC71563.1| exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Pseudozyma
antarctica T-34]
Length = 333
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 23/174 (13%)
Query: 46 DYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDV 105
D R+YVP GD V+ +T+R D+Y V + A L LAFEGATK++ P + G +
Sbjct: 117 DPHARQYVPAPGDSVVAQITNRGADSYTVSLFGAHAATLPALAFEGATKRHKPNLNIGAL 176
Query: 106 VAGKLLTANKDMESEMVCV----------------DSRGKEFIMGILNDGYLLHTSISLC 149
V ++++A++ E E+ C+ D RG++ + L HTS+ L
Sbjct: 177 VYARIVSADRFTEPELTCLNPLTAKSDGFGHLKTTDHRGEKVAHAM-----LFHTSLGLA 231
Query: 150 RKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCEL 203
R LL P PLL +A + E +IG NG +W+R + + VG L+ + +L
Sbjct: 232 RSLLRPDHPLLGLVA--AHFPFEAAIGQNGAVWVRANEPNHLIAVGRLLHAADL 283
>gi|449302167|gb|EMC98176.1| hypothetical protein BAUCODRAFT_67161 [Baudoinia compniacensis UAMH
10762]
Length = 241
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 10/212 (4%)
Query: 4 DTLSLNAEPRLILGPGLRR-ESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVI 61
D L + L LGPGLR S I + G+L+ K +++Y RY P+ GDLV+
Sbjct: 15 DRLPKAKKGTLTLGPGLRHILPSTISATTPGVLQVDHKKAAVWLEYPNGRYQPSVGDLVV 74
Query: 62 GVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
+ + Y + H P A+L LAFEGA KK P+++ GD+V ++ A+K E+E
Sbjct: 75 AQIHHSTSEAYSCIVTPHTPFALLGQLAFEGANKKTRPQLKAGDMVYARVSRASKYEETE 134
Query: 121 MVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLL--NPKCP--LLKQLAKRSRQKMELSI 175
+ CV S GK MG L G + S S R+L+ N K +L ++ +++R E+++
Sbjct: 135 LECVSASTGKADGMGPLKGGMVFDVSPSFARRLMMGNGKGGVIVLDEVGEKAR--FEVAV 192
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYE 207
G NG++W+ S + T+ +G L+ + ++
Sbjct: 193 GRNGRLWLDSGSVAVTIGIGRLLQQTDEEGWD 224
>gi|323448748|gb|EGB04643.1| hypothetical protein AURANDRAFT_32271 [Aureococcus anophagefferens]
Length = 227
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 13/178 (7%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDI-GSHDPAVLSYLAFEGATKKNPPKVETGDVVAG 108
+RY P D V+G+V R + YRVD+ G+ P L LAF+GATK+N P++ GD V
Sbjct: 36 KRYAPVEEDYVVGIVEDRGAEAYRVDLLGASVPGNLGALAFDGATKRNRPQLAIGDAVFC 95
Query: 109 KLLTANKDMESEMVCVDSRG--KEFIMGILNDGYL--------LHTSISLCRKLLNPKCP 158
++ + E+++ C +RG KE++ G G L S + R+LL P
Sbjct: 96 RVERTTRGGEAQLSCCATRGSKKEWMTGAATFGKLAAGAACAVASVSPAFARRLLARDAP 155
Query: 159 LLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
+L L K K E++IG NG +WIR + DT+ V N + + E L ++ + + I
Sbjct: 156 VLAALGKHV--KYEVAIGHNGAVWIRSGNTLDTIIVSNAVENAEHLDEAQVAPMVDQI 211
>gi|323448934|gb|EGB04826.1| hypothetical protein AURANDRAFT_31793 [Aureococcus anophagefferens]
Length = 227
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 13/178 (7%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDI-GSHDPAVLSYLAFEGATKKNPPKVETGDVVAG 108
+RY P D V+G+V R + YRVD+ G+ P L LAF+GATK+N P++ GD V
Sbjct: 36 KRYAPVEEDYVVGIVEDRGAEAYRVDLLGASVPGNLGALAFDGATKRNRPQLAIGDAVFC 95
Query: 109 KLLTANKDMESEMVCVDSRG--KEFIMGILNDGYL--------LHTSISLCRKLLNPKCP 158
++ + E+++ C +RG KE++ G G L S + R+LL P
Sbjct: 96 RVERTTRGGEAQLSCCATRGSKKEWMTGAATFGKLAAGAACAVASVSPAFARRLLARDAP 155
Query: 159 LLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
+L L K K E++IG NG +WIR + DT+ V N + + E L ++ + + I
Sbjct: 156 VLAALGKHV--KYEVAIGHNGAVWIRSGNTLDTIIVSNAVENAEHLDEAQVAPMVDQI 211
>gi|118353987|ref|XP_001010258.1| hypothetical protein TTHERM_01050590 [Tetrahymena thermophila]
gi|89292025|gb|EAR90013.1| hypothetical protein TTHERM_01050590 [Tetrahymena thermophila
SB210]
Length = 249
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGK 109
++Y D VIGV+ RV + Y VDIG+ + A+LS+ FEGATKKN P + G ++ +
Sbjct: 71 QKYYAEVDDYVIGVIKGRVQEYYLVDIGAQEDALLSFYGFEGATKKNRPNLRDGSLIFCR 130
Query: 110 LLTANKDMESEMVCVDSRGK------EFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQL 163
+ ANK M+ ++ C+ + K E G L DG + + SI R ++ + +
Sbjct: 131 VTEANKYMKIKVDCIHPKIKKQWMTGESFFGQLKDGMVSNISIEYARSIIGQGDFVFRAF 190
Query: 164 AKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
K+ + E +IG NGK+WI+ +T+ + N++ CE +S E+I
Sbjct: 191 -KKYIKSFETAIGSNGKVWIKTLQPQNTILILNVLNKCENMSIEQI 235
>gi|237830329|ref|XP_002364462.1| hypothetical protein TGME49_112400 [Toxoplasma gondii ME49]
gi|211962126|gb|EEA97321.1| hypothetical protein TGME49_112400 [Toxoplasma gondii ME49]
gi|221487539|gb|EEE25771.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221507332|gb|EEE32936.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 275
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 97/171 (56%), Gaps = 12/171 (7%)
Query: 41 FTYYVDYI---QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA-FEGATKKN 96
+ Y YI Q+RY P GD+V+G+V+ + + Y V+I + L ++ FEGAT+++
Sbjct: 85 YPYSPSYIRGSQKRYEPVEGDVVVGIVSGKKNEAYTVNIRARGDGSLPLVSSFEGATRRH 144
Query: 97 PPKVETGDVVAGKLLTANKDMESEMVCVDSRGK------EFIMGILNDGYLLHTSISLCR 150
P++ G ++ ++ A+ ++ +E+ C+D K E ++G L G++L L
Sbjct: 145 KPELRRGSLILCRVERASPELGAELTCIDPNCKKSWTSQEKLLGELEGGFVLDVPAPLAI 204
Query: 151 KLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
L +P C LL+ L +R E++ G NG++WIR + D + +GN++++C
Sbjct: 205 SLSSPHCFLLESLGER--LAFEIASGANGRVWIRAKDAGDAILIGNILVAC 253
>gi|343428944|emb|CBQ72489.1| related to RRP40-protein involved in ribosomal RNA processing,
component of the exosome complex [Sporisorium reilianum
SRZ2]
Length = 277
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 29/231 (12%)
Query: 1 MAGDTLSLNAEPRLILGPGL---RRESSAILVSQSGIL------------RHAKPFTYYV 45
+ GD +S+ + + LGPGL SS++ + G L + A+ +V
Sbjct: 5 LPGDVVSVPSSSAIKLGPGLLPTPNASSSLTAIRPGALGQIGSSSTASKGKDAQ-TALWV 63
Query: 46 DYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDV 105
+ RYVP GD VIG +T+R ++Y V + S A L L+FEGATK++ P + G +
Sbjct: 64 ETNTLRYVPAPGDSVIGQITNRGAESYTVTLFSAHAATLPALSFEGATKRHKPNLRIGLL 123
Query: 106 VAGKLLTANKDMESEMVCVDS-RGKEFIMGIL----------NDGYLLHTSISLCRKLLN 154
V +++ A++ E E+ CV+ GK G L L S+ L R LL
Sbjct: 124 VYARIVGADRFTEPELTCVNPVTGKSDGFGDLKTTDERGERVGHAMLFVVSVGLARSLLR 183
Query: 155 PKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
P LLKQ+A + E ++G NG +W+R + VG ++ + +LLS
Sbjct: 184 PTHALLKQVA--AHFPFEAAVGANGAVWVRANEPRHVIAVGKVLDAADLLS 232
>gi|440293953|gb|ELP87000.1| exosome complex exonuclease RRP40, putative [Entamoeba invadens
IP1]
Length = 232
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 7/202 (3%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQ-RRYVPTRGDL 59
G T R G G+ + +VS++G+L++ YY Y ++Y P+ GD+
Sbjct: 14 FPGSTFKFEKGSRF--GDGIISKEGMPVVSRAGVLKYQSDTKYYYVYSDIKKYHPSVGDV 71
Query: 60 VIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
V+G++ R D Y V+IG++ A L LAFE ATKK P + GD V +++ +
Sbjct: 72 VVGLIRRRTKDFYYVNIGAYCDATLDLLAFENATKKTKPNLNEGDSVYCRVI--DTKGVP 129
Query: 120 EMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG 179
++ C+ R E G L G+ + S+CR+++ C +L + + + E+++G+NG
Sbjct: 130 QVACISQRKMEDGFGPLVGGWTFNLPQSMCRRIMGDGCCVLPSIGQYT--PCEVAVGVNG 187
Query: 180 KIWIRCESFSDTVRVGNLIMSC 201
+W+R V V N +++C
Sbjct: 188 VVWVRTPKQITDVIVENCLVAC 209
>gi|154321644|ref|XP_001560137.1| hypothetical protein BC1G_00969 [Botryotinia fuckeliana B05.10]
gi|347833632|emb|CCD49329.1| similar to exosome complex exonuclease Rrp40 [Botryotinia
fuckeliana]
Length = 243
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 11/199 (5%)
Query: 14 LILGPGLRR-ESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + I + +G LR ++ +V++ RY+PT GDLVI + GD
Sbjct: 26 LKLGPGLRHIPPNTITSTVAGQLRTDSRKNAVWVEFNAGRYIPTVGDLVIASIKKSAGDV 85
Query: 72 YRVDIGSH-DPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGK 129
+ ++ A L L+FEGATKK P++E G +V ++ ANK M+ E+ CV S GK
Sbjct: 86 FYANLSDFTSDASLPVLSFEGATKKTRPQLEKGALVYARVTLANKHMDPELECVSASTGK 145
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPK------CPLLKQLAKRSRQKMELSIGMNGKIWI 183
+G L G L S+ + R+++ + +L++L + + E+++G NGK+W+
Sbjct: 146 SEGLGPLEGGMLFDVSLGMARRMMMARPADQGGLTILEELGE-AGVSFEIAVGRNGKVWV 204
Query: 184 RCESFSDTVRVGNLIMSCE 202
++ T+ +G + +
Sbjct: 205 DSKTVKTTLAIGKALKETD 223
>gi|430812777|emb|CCJ29817.1| unnamed protein product, partial [Pneumocystis jirovecii]
gi|430814327|emb|CCJ28423.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 202
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 42 TYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVE 101
T+Y+DY R+Y P GD VIG V + + Y+VD+ L LAFE T+K+ P ++
Sbjct: 11 TFYIDYDCRKYTPVIGDSVIGQVMVKHAEGYKVDLCGTRLGQLGALAFENVTRKSRPNLQ 70
Query: 102 TGDVVAGKLLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHT-SISLCRK-------- 151
G ++ +++ A+K++E E+ C D + K I G L G+L+H S SLC+K
Sbjct: 71 VGALIYARVIYADKEIEPEIECTDGTDEKSSIFGELKGGFLIHGLSRSLCQKYIIQHIII 130
Query: 152 ------LLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
+L+ PLL L + E+++G NG+IWI + T+ + I E L+
Sbjct: 131 NLIKYRILDKNHPLLSTLG--ASIPFEVAVGSNGRIWIHSKHVGITIALVQAIKKSESLN 188
Query: 206 YEEILNLC 213
+I+ +C
Sbjct: 189 DNDIIKIC 196
>gi|164660510|ref|XP_001731378.1| hypothetical protein MGL_1561 [Malassezia globosa CBS 7966]
gi|159105278|gb|EDP44164.1| hypothetical protein MGL_1561 [Malassezia globosa CBS 7966]
Length = 312
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 36 RHAKPFT---YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGA 92
R ++P T +YV+ QRRYVP+ GD VI VT+R ++Y + + S P+ L LAFEGA
Sbjct: 57 RESRPATMHGWYVESAQRRYVPSVGDRVIAQVTNRGMESYTLTLFSAHPSTLPVLAFEGA 116
Query: 93 TKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS-RGKEFIMGILND-----GYLLHTSI 146
T++N P ++ G +V +++ A E E+ C+D K MG L + S+
Sbjct: 117 TRRNRPNLQIGALVYARVVNAEPWSEPELSCIDPIHNKADGMGELKATEPDVAMVWQVSL 176
Query: 147 SLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
SL + +L P+ LL ++K E +IG NG +W+R + +G ++ + +
Sbjct: 177 SLAQSMLRPQHTLLLNVSKHF--AFEAAIGKNGLVWVRTAQAEHAIALGRVLAAAD 230
>gi|406858917|gb|EKD11997.1| exosome complex exonuclease RRP40 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 243
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 13/211 (6%)
Query: 4 DTLSLNAEPRLIL--GPGLRR-ESSAILVSQSGIL-RHAKPFTYYVDYIQRRYVPTRGDL 59
D SL + P+L L GPGLR S I + +G L A+ +V++ RY+PT GDL
Sbjct: 14 DPESLPSHPKLPLKLGPGLRLLPPSTITPTVAGHLCTDARKNAVWVEFNGGRYIPTVGDL 73
Query: 60 VIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VI V D Y V + + P A L L+FEGATKK P++ G +V ++ ANK M+
Sbjct: 74 VIATVQKHSVDVYFVSLSDYMPNASLPQLSFEGATKKTRPQLGYGSLVYARVTLANKHMD 133
Query: 119 SEMVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLLNPK------CPLLKQLAKRSRQKM 171
E+ CV S GK +G L G L S+ + R+L+ K +L+++ +
Sbjct: 134 PELECVSSSTGKSEGLGPLTGGMLFAISLGMARRLMLSKPGEQGNLVVLEEIGG-AGVPF 192
Query: 172 ELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
E+++G NGK+W+ +S T+ +G + +
Sbjct: 193 EVAVGRNGKLWVDSKSVKATLAIGKAVQETD 223
>gi|452837031|gb|EME38974.1| hypothetical protein DOTSEDRAFT_39165 [Dothistroma septosporum
NZE10]
Length = 243
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 4 DTLSLNAEPRLILGPGLRR-ESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVI 61
D L + + L LGPGLR IL + SG L+ K ++++ RYVP+ GDL+I
Sbjct: 14 DQLPKSKKGTLTLGPGLRHIPPQTILTTTSGTLQIDPKKSALWLEHPNGRYVPSSGDLII 73
Query: 62 GVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
+ D Y + H P A+L L+FEGA KK+ P+++ GD+V ++ + ++ ++E
Sbjct: 74 AQIHHTGSDVYFCSLTPHTPHALLGQLSFEGANKKSRPQLKAGDLVYARVTSTSRWEDTE 133
Query: 121 MVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL---------NPKCPLLKQLAKRSRQK 170
+ CV S GK MG L+ G S R+L+ +L+++ ++ R
Sbjct: 134 IECVSSATGKADGMGPLSGGMCFWVSCGFARRLMMGTGKEGRSKGGVVVLEEVGEKVR-- 191
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
E+++G NG++W+ S +TV +G L+ +
Sbjct: 192 FEVAVGRNGRVWVDSGSVRETVMIGRLLRQAD 223
>gi|346970181|gb|EGY13633.1| exosome complex exonuclease RRP40 [Verticillium dahliae VdLs.17]
Length = 245
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 15/201 (7%)
Query: 14 LILGPGLR----RESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVG 69
L LGPGLR R+ + I AK + +VD + RYVP+ GDLVIG V
Sbjct: 27 LRLGPGLRHVPPRDIKPTIAGNLAI--DAKKNSIWVDQSRGRYVPSVGDLVIGTVQRSAQ 84
Query: 70 DNYRVDIGSHDPAVL-SYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SR 127
+ + V + + AVL +FE A+KKN P++ +G +V ++ +A K M++E+ CV+ S
Sbjct: 85 EAFLVHLADYSAAVLLPQFSFELASKKNRPQLPSGALVYARVASAEKHMDAELECVNPST 144
Query: 128 GKEFIMGILNDGYLLHTSISLCRKLLNP------KCPLLKQLAKRSRQKMELSIGMNGKI 181
GK +G L G L S+ + R+LL P K +L +L E ++G NG++
Sbjct: 145 GKADGLGPLTGGMLFTISLGMARRLLMPRSAEEGKVVVLDELGSLG-AAFETAVGRNGRL 203
Query: 182 WIRCESFSDTVRVGNLIMSCE 202
W+ ES + VG + +
Sbjct: 204 WVNSESVKTIIAVGRAVQQTD 224
>gi|401411503|ref|XP_003885199.1| hypothetical protein NCLIV_055960 [Neospora caninum Liverpool]
gi|325119618|emb|CBZ55171.1| hypothetical protein NCLIV_055960 [Neospora caninum Liverpool]
Length = 276
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 96/171 (56%), Gaps = 12/171 (7%)
Query: 41 FTYYVDYIQ---RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA-FEGATKKN 96
+ Y Y++ +RY P GD+V+G+V+ + + Y V+I + L +A FEGAT+++
Sbjct: 86 YPYSPAYLRGRHKRYEPAEGDVVVGIVSGKKNEAYSVNIRARGDGFLPLVAGFEGATRRH 145
Query: 97 PPKVETGDVVAGKLLTANKDMESEMVCVDSR------GKEFIMGILNDGYLLHTSISLCR 150
P++ G +V ++ + ++ +E+ CVD KE ++G L G+++ L
Sbjct: 146 KPELHRGSLVLCRVERMSAELGAELTCVDPNCKKSWTSKEKLLGELEGGFVIDVPPPLAI 205
Query: 151 KLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
L +P C LL+ L +R E++ G NG+IWIR + D + +GN++++C
Sbjct: 206 SLASPHCFLLESLGER--LAFEIAAGANGRIWIRTKEAGDAILIGNILVAC 254
>gi|358059506|dbj|GAA94663.1| hypothetical protein E5Q_01316 [Mixia osmundae IAM 14324]
Length = 301
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 42 TYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVE 101
+ ++D +RY P+ + VIG VT R + YRVDIG+ PA L LAF+GATK++ P++
Sbjct: 96 SLWIDSAGKRYNPSPSESVIGFVTYRGAEGYRVDIGASQPANLDALAFQGATKRSKPQLN 155
Query: 102 TGDVVAGKLLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLH-TSISLCRKLLNPKCPL 159
G V ++ A +E E+ C D + K G L G +L + CR+LL K
Sbjct: 156 LGAAVYARVSLAYAFVEPEIECYDPTTQKSAGFGELEGGMILRDVPLRKCRELLADKDAA 215
Query: 160 LKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLC 213
L +L K + EL+IG+NG+IW++ + T+ + Y+ + N+C
Sbjct: 216 LSELGK--KMPFELAIGVNGRIWLKGADTASTLEL-----------YQTLANMC 256
>gi|37781193|gb|AAP34304.1| Rrp40-like protein [Ogataea angusta]
Length = 156
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
+P D V+G + G+ YRV + + PAVL + AF A+KKN PK++TGD+V ++
Sbjct: 1 MPAVQDFVVGTIVGSFGEFYRVSLSNFSTPAVLGFYAFPNASKKNRPKLKTGDLVYARVA 60
Query: 112 TANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPK-CPLLKQLAKRSRQ 169
+ D++ E+ C D + GKE G L G++ ++ R LL + P+L +L + +
Sbjct: 61 AVDPDLDVELECFDATTGKEGGFGHLEGGFVFEVRLAYARYLLRQQDAPVLTKLMR--KY 118
Query: 170 KMELSIGMNGKIWIRCESFSDTV 192
+ EL+IG NG+IWI+ ++ +T+
Sbjct: 119 QFELAIGANGRIWIKSDTLPNTI 141
>gi|365763125|gb|EHN04655.1| Rrp40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 141
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 87 LAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTS 145
+AF A+KKN P ++ GD+V ++ TA K++E+E+ C DS G++ GIL DG ++ +
Sbjct: 1 MAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVN 60
Query: 146 ISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
++ R+LL N PLLK LA + K E++IG+NGKIW++CE S+T+ IM C
Sbjct: 61 LNFARQLLFNNDFPLLKVLA--AHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMEC 115
>gi|339240671|ref|XP_003376261.1| signal peptidase complex catalytic subunit Sec11 [Trichinella
spiralis]
gi|316975035|gb|EFV58494.1| signal peptidase complex catalytic subunit Sec11 [Trichinella
spiralis]
Length = 1099
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
GD L L +GPG+R S+ ++ + G+ K ++D+ ++ Y P GD V
Sbjct: 754 FPGDDLGPVFHLPLAMGPGVRLSSNQLISTHFGMALQRKD-GIWIDFCEKAYFPYAGDRV 812
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
+G+V + D ++V+IG+ A++ YL+FE ATK+ P V GDV+ G+L D+E E
Sbjct: 813 VGIVVGKWMDYWKVEIGAWKTAIIHYLSFENATKRMRPVVNMGDVIYGRL---KHDIEPE 869
Query: 121 MVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPK 156
+VC D GK +GIL +DG +L + R+LL K
Sbjct: 870 LVCKDEMGKANNLGILPSDGMMLKMPPAYARRLLGRK 906
>gi|398388107|ref|XP_003847515.1| hypothetical protein MYCGRDRAFT_88378 [Zymoseptoria tritici IPO323]
gi|339467388|gb|EGP82491.1| hypothetical protein MYCGRDRAFT_88378 [Zymoseptoria tritici IPO323]
Length = 249
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 13/197 (6%)
Query: 14 LILGPGLRR-ESSAILVSQSGILRHAKP--FTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGLR S IL + SG L H P ++++ RY+P+ DLVI + D
Sbjct: 27 LTLGPGLRHIPPSTILTTTSGTL-HTDPKKSALWLEHPHGRYLPSVNDLVIAQIHHSSTD 85
Query: 71 NYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-G 128
Y + H P A+L L+FEGA KK P++++GD+V ++ A+K + E+ CV+S G
Sbjct: 86 VYHCRLSPHTPYALLGQLSFEGANKKTRPQLKSGDLVYARVCKASKWEDVEIECVNSNSG 145
Query: 129 KEFIMGILNDGYLLHTSISLCRKLL-------NPKCPLLKQLAKRSRQKMELSIGMNGKI 181
K MG L G + S R+L+ ++ + + E+++G NG++
Sbjct: 146 KAEGMGPLTGGMVFDVSPGFARRLMMGTTKDGKSVGGVVVLEEVGEKVRFEVAVGRNGRV 205
Query: 182 WIRCESFSDTVRVGNLI 198
W+ S +TV +G L+
Sbjct: 206 WVDSGSVRETVAIGRLL 222
>gi|302422376|ref|XP_003009018.1| exosome complex exonuclease RRP40 [Verticillium albo-atrum
VaMs.102]
gi|261352164|gb|EEY14592.1| exosome complex exonuclease RRP40 [Verticillium albo-atrum
VaMs.102]
Length = 245
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 15/201 (7%)
Query: 14 LILGPGLR----RESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVG 69
L LGPGLR R+ + I AK + +V+ + RYVP+ GDLVIG V
Sbjct: 27 LRLGPGLRHVPPRDIKPTIAGNLAI--DAKKNSIWVEQSRGRYVPSVGDLVIGTVQRSAQ 84
Query: 70 DNYRVDIGSHDPAVL-SYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SR 127
+ + V + + VL +FE A+KKN P++ +G +V ++ +A K M++E+ CV+ S
Sbjct: 85 EAFLVHLADYSATVLLPQFSFELASKKNRPQLPSGALVYARVASAEKHMDAELECVNPST 144
Query: 128 GKEFIMGILNDGYLLHTSISLCRKLLNP------KCPLLKQLAKRSRQKMELSIGMNGKI 181
GK +G L G L + S+ + R+LL P K +L +L E ++G NG++
Sbjct: 145 GKADGLGPLTGGMLFNISLGMARRLLMPRSAEEGKVVVLDELGSLG-AAFETAVGRNGRL 203
Query: 182 WIRCESFSDTVRVGNLIMSCE 202
W+ ES + VG + +
Sbjct: 204 WVNSESVKTIIAVGRAVQQTD 224
>gi|50554611|ref|XP_504714.1| YALI0E33121p [Yarrowia lipolytica]
gi|49650583|emb|CAG80318.1| YALI0E33121p [Yarrowia lipolytica CLIB122]
Length = 295
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 94/175 (53%), Gaps = 4/175 (2%)
Query: 44 YVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVET 102
Y+D RRY+P D VIG VT+R + Y+V + P V L+ +AF A+KKN +
Sbjct: 119 YIDSDTRRYIPAVNDNVIGTVTTRHAEGYKVSVSDLSPGVQLNAMAFPNASKKNRVNLAN 178
Query: 103 GDVVAGKLLTANKDMESEMVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
+V ++ +A++++E+E+ C+D + GK G L DG+ I+ R+LL +L
Sbjct: 179 DALVYARVSSASREVEAEIECIDPQSGKAGGYGELKDGFCFDAPIAFTRQLLFKGHTVLD 238
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
+ + E++IG+NGKIW++ E T+++ I C +++ E I
Sbjct: 239 TIGELV--PFEIAIGVNGKIWVKSEDVPTTLKIYQCIDKCREWPEDQVRENVEQI 291
>gi|328854865|gb|EGG03995.1| hypothetical protein MELLADRAFT_29054 [Melampsora larici-populina
98AG31]
Length = 143
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
YVP G+ VIG++ SR D Y+VDIGS A L LAFE ATK++ P ++ G VV ++
Sbjct: 1 YVPALGEPVIGIIVSRQADGYKVDIGSSLTARLDALAFESATKRSKPNLKIGTVVYARVS 60
Query: 112 TANKDMESEMVCVD-SRGKEFIMGILNDGYLLHT-SISLCRKLLNPKCPLLKQLAKRSRQ 169
A +E E+ C+D + K G + GYL+ + R LL+P LL +L ++
Sbjct: 61 LALPFIEPELECMDPTTMKANGFGEMTGGYLMRDLDLRNSRLLLSPPQTLLAKLGQQV-- 118
Query: 170 KMELSIGMNGKIWIRCESFSDTV 192
E+SIG+NG+IW++ ++ S T+
Sbjct: 119 PYEISIGLNGRIWLKAKTVSQTI 141
>gi|171684817|ref|XP_001907350.1| hypothetical protein [Podospora anserina S mat+]
gi|170942369|emb|CAP68021.1| unnamed protein product [Podospora anserina S mat+]
Length = 246
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 16/217 (7%)
Query: 1 MAGDTLSLNAEPR-----LILGPGLRR--ESSAILVSQSGILRHAKPFTYYVDYIQRRYV 53
+ GD +S + P L LGPGLR S + V ++ + + + +V+Y RY+
Sbjct: 10 LPGDPISPDLIPSSTSKPLRLGPGLRHVPPSDIVPVVAGQLITNHQKNSMWVEYNSNRYI 69
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSH-DPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P GDL+I + D Y I + PA L +L+FE ATKK P++ G +V +++
Sbjct: 70 PAPGDLIIAQILRSGPDLYFTSISPYTPPATLPHLSFESATKKTRPQLAPGALVYARVVL 129
Query: 113 ANKDMESEMVCV-DSRGKEFIMGILNDGYLLHTSISLCRKLL------NPKCPLLKQLAK 165
ANK M+ E+ CV S GK +G L G + S+ R+LL K +L+ L
Sbjct: 130 ANKHMDPEIECVSQSTGKSDGLGELKGGMVFDVSLQFARRLLMAKSKEEGKVEVLELLGG 189
Query: 166 RSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
E+++G NGK+W+ E V VG + +
Sbjct: 190 EG-LAFEIAVGRNGKVWVGGEDVKAIVVVGRTLRETD 225
>gi|407918470|gb|EKG11741.1| hypothetical protein MPH_11234 [Macrophomina phaseolina MS6]
Length = 251
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 7 SLNAEPRLILGPGLRR-ESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVIGVV 64
S N + LI+GPGLR S I + +G L + +V+ RYVP + D+++ V
Sbjct: 20 SQNHKKPLIIGPGLRHIPPSTITTTIAGSLNVDTRKNAIWVERNGGRYVPVQNDVILATV 79
Query: 65 TSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
+ + I + P A L +LAFEGATKK P++ G +V ++ A+K ME E+ C
Sbjct: 80 HHSATEMFICSITPYTPMANLPHLAFEGATKKTRPQLAPGALVYARISAASKHMEPELEC 139
Query: 124 VD-SRGKEFIMGILNDGYLLHTSISLCRKLLNP------------KCPLLKQLAKRSRQK 170
V + GK +G L G + S+ + R+LL P K +L++LA+R R
Sbjct: 140 VSATTGKADGLGPLKGGMVFEISLGMARRLLMPAGKKNAGEGGPGKIVVLEELAERVR-- 197
Query: 171 MELSIGMNGKIWIRCE 186
E+++G NG++W+ E
Sbjct: 198 FEVAVGRNGRVWVNSE 213
>gi|156046006|ref|XP_001589558.1| hypothetical protein SS1G_09279 [Sclerotinia sclerotiorum 1980]
gi|154693675|gb|EDN93413.1| hypothetical protein SS1G_09279 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 209
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 14 LILGPGLRR-ESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + I + +G L+ ++ +V++ RY+PT GDLVI + GD
Sbjct: 26 LKLGPGLRHIPPNTITSTVAGQLQTDSRKNAIWVEFNAGRYIPTVGDLVIASIKKSAGDV 85
Query: 72 YRVDIGSH-DPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGK 129
Y ++ A L L+FEGATKK P++E G +V ++ ANK M+ E+ CV S GK
Sbjct: 86 YYANLSDFTSDASLPVLSFEGATKKTRPQLEKGSLVYARVTLANKHMDPELECVSASTGK 145
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPK------CPLLKQLAKRSRQKMELSIGMNGKIWI 183
+G L G L S+ + R+++ + +L++L + + E+++G NGK+W+
Sbjct: 146 SEGLGPLEGGMLFDVSLGMARRMMMSRPADQGGLTILEELGE-AGVSFEIAVGRNGKVWV 204
>gi|169595240|ref|XP_001791044.1| hypothetical protein SNOG_00354 [Phaeosphaeria nodorum SN15]
gi|111070729|gb|EAT91849.1| hypothetical protein SNOG_00354 [Phaeosphaeria nodorum SN15]
Length = 238
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 11/209 (5%)
Query: 1 MAGDTLSLNAEPR-------LILGPGLRR--ESSAILVSQSGILRHAKPFTYYVDYIQRR 51
+ GD + +A P L LGPGLR S+ + ++ K V+ R
Sbjct: 6 LPGDEIPPHALPTGTGKRKTLKLGPGLRHIPPSTVVTTVAGALVTDNKKNAASVETNSGR 65
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKL 110
Y+P DLVI V + G+++ + H P A L +LAFEGATKK P++ ++ ++
Sbjct: 66 YIPYPNDLVIATVNNSTGESFNCLLSPHTPFAALPHLAFEGATKKTRPQLPPNSLIYTRI 125
Query: 111 LTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQ 169
++ +D E+ CVD + GK +G+L G + S+ + R+LL PK L+ +
Sbjct: 126 VSCPRDSAPELTCVDPATGKSEGLGLLKGGMVFPISLGMARRLLAPKEELVLLEELGKKI 185
Query: 170 KMELSIGMNGKIWIRCESFSDTVRVGNLI 198
E+++G NG + + S T+ VG +
Sbjct: 186 GFEITVGRNGVVHVDAGSVGRTLAVGKAL 214
>gi|408388586|gb|EKJ68267.1| hypothetical protein FPSE_11570 [Fusarium pseudograminearum CS3096]
Length = 277
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + I+ + +G ++ + V+ + RY P G+LVIG + D
Sbjct: 61 LRLGPGLRHVPPNGIIPTLAGQLVTDRQKNAIRVENARGRYTPRVGELVIGTIQRSAADF 120
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGK 129
+ V + + PA L L+FEGATKK P++ G +V ++ AN+ M+ E+ CV S GK
Sbjct: 121 FFVTLSDYTAPAQLPQLSFEGATKKTRPQLAAGALVYARVALANRHMDPEIECVSASTGK 180
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPK------CPLLKQLAKRSRQKMELSIGMNGKIWI 183
+G L G L + S+ + R+L+ PK +L++L Q E + G NGK W+
Sbjct: 181 SEGLGPLAGGMLYNVSLGMARRLMMPKSVQEGRVVVLEELGNAGLQ-FETATGRNGKFWV 239
Query: 184 RCESFSDTVRVGNLIMSCE 202
E+ + VG + +
Sbjct: 240 DSENVKTVIAVGRAVQETD 258
>gi|344304481|gb|EGW34713.1| exosome complex exonuclease RRP40 [Spathaspora passalidarum NRRL
Y-27907]
Length = 257
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 109/182 (59%), Gaps = 11/182 (6%)
Query: 13 RLILGPGLRRESSA--ILVSQSGILRHAKPFTYYVDYIQ---RRYVPTRGDLVIGVVTSR 67
+ +GPG+ + + ++ SG++ + + YI+ +RY+P D VIGVVT
Sbjct: 20 KTTIGPGVYKMPTTHNLIPCSSGVITVETKNSNQLVYIESNNKRYIPHTNDFVIGVVTGV 79
Query: 68 VGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD- 125
VG++Y+V + P +L ++AF ATKKN P ++ G V ++L ++E+E+ C+D
Sbjct: 80 VGESYKVQLQDFSSPVLLGFMAFPNATKKNRPNLKIGSAVYARVLQDIPEIEAELECIDP 139
Query: 126 SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
+ GKE G+L++ GY+ ++ R+LL NPK L+ L+ + + E++IG+NGKIWI
Sbjct: 140 TTGKEGGFGLLDESGYIFDVELNFARELLFNPKTVFLQLLSTKCQ--FEIAIGINGKIWI 197
Query: 184 RC 185
+C
Sbjct: 198 KC 199
>gi|340992584|gb|EGS23139.1| hypothetical protein CTHT_0008000 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 256
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 19/208 (9%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR S I+ + +G ++ + + +V+Y +RYVPT+ DLV+ V D+
Sbjct: 28 LRLGPGLRHVPPSDIIPTVAGQLITNLNKNSMWVEYNSQRYVPTQNDLVLAQVLRSTQDS 87
Query: 72 YRVDIGSH-DPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGK 129
Y I H PA L +LAFE ATKK P+++ G +V ++ AN+ M+ E+ CV+ S GK
Sbjct: 88 YLCLITPHTPPATLPHLAFESATKKTRPQLQPGQLVYARVSLANRHMDPELECVNPSTGK 147
Query: 130 EFIMG-ILNDGYLLHTSISLCRKLL------NPKCPLLKQLAKRSRQ--------KMELS 174
+G I G + S+ R+LL K +L+ LA E +
Sbjct: 148 ADGLGPITGPGCVFEVSLGFARRLLMAKSREEGKVGVLEMLAGEDPSIGEAGAGLAFETA 207
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCE 202
+G NG++W+ E + VG + +
Sbjct: 208 VGRNGRVWVGSEDVKTVIIVGRALQETD 235
>gi|449016528|dbj|BAM79930.1| similar to exosome complex exonuclease RRP40 [Cyanidioschyzon
merolae strain 10D]
Length = 270
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 114/220 (51%), Gaps = 26/220 (11%)
Query: 1 MAGDTLSLNAEPRLI-------LGPGLR-----RESSAILVSQSGILRHAKPFTYYVDYI 48
+ GDT+ +A +L +GPG+ S ++ +++G LR+A +V+
Sbjct: 22 LPGDTVLADARAQLPANLVPLRVGPGITALPDWNRPSQLIATRTGRLRYAP--RMHVESN 79
Query: 49 QRRYVP-TRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVA 107
QRRY+P +V VV GD+YRV IG+ PA+L LAFEGATK+N P + G VV
Sbjct: 80 QRRYIPYVNDVVVGVVVDRVGGDHYRVAIGAATPALLPLLAFEGATKRNRPHLAPGHVVY 139
Query: 108 GKLL---TANKDMESEMVCVDS------RGKEFIMGILNDGYLLHTSISLCRKLLNPKCP 158
++ T + E+E+ C E I G L G L S++ R+++ P
Sbjct: 140 ARVTQVPTPQRFAETELSCQAPGSAKSWTSGEAIFGRLAGGTLFRISLAAARQMIRQDAP 199
Query: 159 LLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLI 198
+L+QL K + EL+IGMNG +W++ + T+ V + I
Sbjct: 200 VLQQLGK--QLVFELAIGMNGIVWVKGRTTRTTILVRHAI 237
>gi|358385077|gb|EHK22674.1| hypothetical protein TRIVIDRAFT_170223 [Trichoderma virens Gv29-8]
Length = 245
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 15/216 (6%)
Query: 9 NAEPRLILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
+A+ L LGPGLR S IL + +G ++ + V+ RY+P G+LVIG +
Sbjct: 22 HAKKPLRLGPGLRHVPPSDILPTLAGQLVTDRQKNAIRVETSNGRYIPRVGELVIGTINK 81
Query: 67 RVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
+ Y V++ + PA+L L+FE ATKK P + G +V ++ ANK M++E+ CV
Sbjct: 82 SASEVYFVNLSDYTAPALLPQLSFESATKKTRPILAPGALVYARVTLANKHMDAELECVS 141
Query: 126 -SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP------LLKQLAKRSRQKMELSIGMN 178
S GK +G L G L S+ + R L+ PK +L +LA Q E + G N
Sbjct: 142 ASTGKADGLGPLVGGMLFTISLGMARLLMMPKKAQHGKLVVLDELADAGVQ-FETATGRN 200
Query: 179 GKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCE 214
G++W+ +S + VG I + E+ LN E
Sbjct: 201 GRLWVDSDSTKAIIAVGRAIQETD----EKSLNADE 232
>gi|322701392|gb|EFY93142.1| hypothetical protein MAC_00925 [Metarhizium acridum CQMa 102]
Length = 245
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 11/199 (5%)
Query: 14 LILGPGLRR-ESSAILVSQSGILRHAKPFTYY-VDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + ++ + +G L +P V+ RYVP G+LVIG + D
Sbjct: 27 LRLGPGLRHVPPNDVVPTLAGQLVTDRPKNAIRVETSHGRYVPRVGELVIGTIHKSAADV 86
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-GK 129
Y V + H P +L L+FE ATKK P + G +V ++ ANK M++E+ CV S GK
Sbjct: 87 YYVHLSDHTAPVLLPQLSFESATKKTRPVLAPGALVYARVTLANKHMDAELECVSSSTGK 146
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKC------PLLKQLAKRSRQKMELSIGMNGKIWI 183
+G L G + S+ + R+L+ PK +L++L Q + + G NG+ W+
Sbjct: 147 SDGLGPLTGGMMFDISLGMARRLMMPKSVQEGKIVVLEELGALGLQ-FDTATGRNGRFWV 205
Query: 184 RCESFSDTVRVGNLIMSCE 202
E+ + VG I +
Sbjct: 206 DSENTKTVLAVGRAIQETD 224
>gi|401887143|gb|EJT51147.1| endoplasmic reticulum protein [Trichosporon asahii var. asahii CBS
2479]
Length = 1111
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 23/150 (15%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGK 109
+RY+P + DLV+G + +R + YRVD+GS A L LAFEGATK++ P
Sbjct: 70 KRYIPAQRDLVLGTIIARHAEGYRVDLGSAHMASLDALAFEGATKRSKP----------- 118
Query: 110 LLTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSR 168
+++ E+ CVD + GK G L G ++ S+ LCR +PK PLL LA +
Sbjct: 119 ------NLKPEIECVDPATGKAEGFGELKGGLMVECSLQLCR---HPKHPLLPALA--AH 167
Query: 169 QKMELSIGMNGKIWIRCESFSDTVRVGNLI 198
E +IG+NG++W + E T+ + +I
Sbjct: 168 IPFETAIGLNGRVWFKTEQVGQTIALRRVI 197
>gi|378729640|gb|EHY56099.1| exosome complex exonuclease RRP40 [Exophiala dermatitidis
NIH/UT8656]
Length = 245
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 6/169 (3%)
Query: 23 ESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP 81
ES + + + G+L+ + + + RY+P GDLVI + D + + I H P
Sbjct: 35 ESDSFIATIGGLLQVDWRKKSAQISTPNARYIPKPGDLVIAQFRASSTDFFHLYINPHSP 94
Query: 82 -AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGKEFI--MGILN 137
A+L LAFEGATKK P+++ D+V K+++A K+M+ E+ CV+ S GK +G L+
Sbjct: 95 QAILPQLAFEGATKKTRPQLKANDLVYAKVVSAQKNMDIELSCVNPSTGKSEPDGLGPLS 154
Query: 138 DGYLLHTSISLCRKLLNPKCPL-LKQLAKRSRQKMELSIGMNGKIWIRC 185
G + S L +LL + L + +L R + E+++G NGK+W+ C
Sbjct: 155 GGMVFDVSPGLAERLLKKQNVLAMDELGSRLQGGFEIAVGKNGKVWVDC 203
>gi|451852044|gb|EMD65339.1| hypothetical protein COCSADRAFT_35396 [Cochliobolus sativus ND90Pr]
Length = 242
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 15/215 (6%)
Query: 1 MAGDTLSLNAEPR-------LILGPGLRR-ESSAILVSQSGIL-RHAKPFTYYVDYIQRR 51
+ GD + +A P+ L +GPGLR + + +G L + +++ R
Sbjct: 9 LPGDEIPKSALPQGTGKKKTLTIGPGLRHIPPDTVTATIAGALVTDNRKNAASIEFNSGR 68
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIG-SHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
Y+P GDLVI V+S + + + S PA L +LAFEGATKK P++ +V ++
Sbjct: 69 YLPFTGDLVIATVSSSAAETFNCLLTPSTPPATLPHLAFEGATKKTRPQLPPNSLVYCRV 128
Query: 111 LTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPK--CPLLKQLAKRS 167
+A KD+ E+ CVD S GK +G+L G + S+ + R++L + LL+ L +
Sbjct: 129 ASAGKDLPPELTCVDPSTGKSEGLGLLKGGMVFKVSLGMARRMLAARGGITLLETLG--A 186
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
+ E+++G NG + + S T+ +G I +
Sbjct: 187 KIGFEVTVGRNGLVHVDAGSVRATLAIGKAIQEVD 221
>gi|400600679|gb|EJP68347.1| exosome complex exonuclease RRP40 [Beauveria bassiana ARSEF 2860]
Length = 247
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 14 LILGPGLRRE--SSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGLR + ++ I + +G ++ + V+ RY+ G+LVIG V D
Sbjct: 26 LRLGPGLRHDPATNEIRPTVAGQLISDRQKNAMRVETSNGRYLARVGELVIGTVQKSAAD 85
Query: 71 NYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-G 128
Y V + H PA L L+FE ATKK P + +G +V ++ A+K M++E+ CV S G
Sbjct: 86 VYYVHLSDHSAPATLPQLSFESATKKTRPMLASGALVYARVTVADKHMDAELECVSSSTG 145
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNP--------KCPLLKQLAKRSRQKMELSIGMNGK 180
K +G L G L S+ R+L+ P K +L+ LA Q E + G NG+
Sbjct: 146 KAEGLGPLTGGMLFPVSLGFARRLMMPGAAGAAGGKVVVLEALAAGGLQ-FETATGRNGR 204
Query: 181 IWIRCESFSDTVRVGNLIMSCE 202
W+ S + VG + +
Sbjct: 205 FWVDSASVRTVLAVGRAVQETD 226
>gi|361125492|gb|EHK97532.1| putative Exosome complex component RRP40 [Glarea lozoyensis 74030]
Length = 235
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 25/227 (11%)
Query: 4 DTLSLNAEPR--LILGPGLRR--ESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDL 59
D+ L + P L LGPGLR S+ + + + +V+ RY PT GDL
Sbjct: 16 DSKDLPSHPTQPLKLGPGLRHIPPSTITTIVAGQLYTDKRKNAVWVESNGGRYTPTIGDL 75
Query: 60 VIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VI + D Y I + P A L L+FEGATKK P++ G +V ++ ANK M+
Sbjct: 76 VIATIQKSSADVYYASISDYTPNATLPQLSFEGATKKTRPQLAFGALVYARVTLANKHMD 135
Query: 119 SEMVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLLNPKCP------LLKQLAKRSRQKM 171
E+ CV S GK +G L ++ R+L+ PK LL++L +
Sbjct: 136 PELECVSSSTGKSEGLGPL----------TMSRRLMLPKPADQGALVLLEELGSQGIS-F 184
Query: 172 ELSIGMNGKIWIRCESFSDTVRVGNLIMSCE--LLSYEEILNLCESI 216
E ++G NG++W++ S T+ +G + + +LS E L + +
Sbjct: 185 ETAVGRNGRVWVKSNSVKATLAIGRAVQETDEKVLSVEGQRKLAKKV 231
>gi|367042374|ref|XP_003651567.1| hypothetical protein THITE_2046078 [Thielavia terrestris NRRL 8126]
gi|346998829|gb|AEO65231.1| hypothetical protein THITE_2046078 [Thielavia terrestris NRRL 8126]
Length = 260
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 24/213 (11%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR S I+ + +G ++ + + +V++ +RY+PT GDLV+ VT +
Sbjct: 27 LRLGPGLRHIPPSDIVPTVAGQLITNPLKNSMWVEFNSQRYIPTTGDLVLATVTRNAPEA 86
Query: 72 YRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGK 129
Y + ++ PA L +LAFEGATKK P++ G +V ++ A++ M+ E+ CV + G+
Sbjct: 87 YLCSLSAYTPAATLPHLAFEGATKKTRPQLAPGQLVYARVALAHRHMDPELECVSAATGR 146
Query: 130 EFIMGIL--NDGYLLHTSISLCRKLLNPK------CPLLKQLAKRSRQ------------ 169
+G + +G + S+ R+LL + +L+ LA + +
Sbjct: 147 ADGLGPIAAGNGCVFDVSLGFARRLLMARSREDGGVGVLEMLAGQDPEVVVGGAGGGGGL 206
Query: 170 KMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
E ++G NGK+W+ ES V VG + +
Sbjct: 207 AFETAVGRNGKVWVGSESAKTVVLVGRALQETD 239
>gi|451997631|gb|EMD90096.1| hypothetical protein COCHEDRAFT_1204709 [Cochliobolus
heterostrophus C5]
Length = 242
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 15/215 (6%)
Query: 1 MAGDTLSLNAEPR-------LILGPGLRR-ESSAILVSQSGIL-RHAKPFTYYVDYIQRR 51
+ GD + +A P+ L +GPGLR + + +G L + +++ R
Sbjct: 9 LPGDEIPKSALPQGTGKKKTLTIGPGLRHIPPDTVTATIAGALVTDNRKNAASIEFNSGR 68
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIG-SHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
Y+P GDLVI V+S + + + S PA L +LAFEGATKK P++ +V ++
Sbjct: 69 YLPYTGDLVIATVSSSAAETFNCLLTPSTPPATLPHLAFEGATKKTRPQLPPNSLVYCRV 128
Query: 111 LTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPK--CPLLKQLAKRS 167
+A KD+ E+ CVD S GK +G+L G + S+ + R++L + LL+ L +
Sbjct: 129 ASAGKDLPPELTCVDPSTGKSEGLGLLKGGMVFKVSLGMARRMLAARGGITLLETLG--A 186
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
+ E+++G NG + + + T+ +G I +
Sbjct: 187 KIGFEVTVGRNGLVHVDAGNVRATLAIGKAIQEVD 221
>gi|358393401|gb|EHK42802.1| hypothetical protein TRIATDRAFT_285511 [Trichoderma atroviride IMI
206040]
Length = 245
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 11/197 (5%)
Query: 16 LGPGLRR-ESSAILVSQSGILRHAK-PFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
LGPGLR S +L + +G L + V+ RY+P G+LVIG V + Y
Sbjct: 29 LGPGLRHVPPSELLPTLAGQLVTDRLKNAIRVETASGRYIPRVGELVIGTVNKSASEVYF 88
Query: 74 VDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGKEF 131
V + + PA+L L+FE ATKK P + G +V ++ ANK M++E+ CV S GK
Sbjct: 89 VSLSDYTAPALLPQLSFESATKKTRPILAPGALVYARVTLANKHMDAELECVSASTGKAD 148
Query: 132 IMGILNDGYLLHTSISLCRKLLNP------KCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
+G L G L S+ + R L+ P K +L +LA Q E + G NG++W+
Sbjct: 149 GLGPLAGGMLFAISLGMARLLMMPKKAQQGKVVVLDELADAGLQ-FETATGRNGRLWVDS 207
Query: 186 ESFSDTVRVGNLIMSCE 202
++ + VG I +
Sbjct: 208 DNTKTIIVVGRAIQETD 224
>gi|389646525|ref|XP_003720894.1| exosome complex exonuclease RRP40 [Magnaporthe oryzae 70-15]
gi|86196555|gb|EAQ71193.1| hypothetical protein MGCH7_ch7g600 [Magnaporthe oryzae 70-15]
gi|351638286|gb|EHA46151.1| exosome complex exonuclease RRP40 [Magnaporthe oryzae 70-15]
gi|440473278|gb|ELQ42086.1| exosome complex exonuclease RRP40 [Magnaporthe oryzae Y34]
gi|440488090|gb|ELQ67835.1| exosome complex exonuclease RRP40 [Magnaporthe oryzae P131]
Length = 264
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 30/217 (13%)
Query: 14 LILGPGLRR-ESSAILVSQSG--ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGLR I+ + +G ++ AKP + +DY RYVP DLVIG V D
Sbjct: 29 LRLGPGLRHIPPDEIVPTVAGKLVVNPAKP-SLSLDYNGGRYVPEPNDLVIGQVHHSSAD 87
Query: 71 NYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV-DSRG 128
+ V + H A+L LAFEGAT+K P + G +V ++ +A++ M++E+ C + G
Sbjct: 88 FHFVTLAPHTTNALLPVLAFEGATRKTRPVLPAGSLVYARVASASRHMDAELECFSQTTG 147
Query: 129 KEFIMGILN-----------------DGYLLHTSISLCRKLLNPKCP------LLKQLAK 165
K +G LN G + + S+ + R+LL P+ +L LA
Sbjct: 148 KADGLGPLNPPAAAAPGAGAVAAAAPTGTVFNVSLGMARRLLMPQAERDAGLVVLDALAA 207
Query: 166 RSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
E ++G NGK+W+ ES V VG + +
Sbjct: 208 EG-LAFETAVGRNGKVWVASESVPTLVLVGRALAEVD 243
>gi|294917295|ref|XP_002778446.1| Exosome complex exonuclease RRP40, putative [Perkinsus marinus ATCC
50983]
gi|239886839|gb|EER10241.1| Exosome complex exonuclease RRP40, putative [Perkinsus marinus ATCC
50983]
Length = 254
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 23/236 (9%)
Query: 1 MAGDTLSLNA------EPRLILGPGLRRESSAILVSQSGIL--RHAKPFTYYVDYIQRRY 52
+ GDT+S+ A +P + G G+R + + +G+L A +D ++RY
Sbjct: 17 LPGDTVSIEAGVVSSCDPNSV-GFGIRLDEDCPKAAVAGLLSVESAVSDIPCIDNTRKRY 75
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDI-GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
+P RGD+V+GVV R + YRVDI G A L LAF GATK++ P + GD+V +
Sbjct: 76 IPRRGDMVLGVVVQRTAEYYRVDINGPTGTANLPTLAFNGATKRHKPNLSPGDLVYCHVT 135
Query: 112 TANKDMESEMVCVD-SRGKEFIMGILNDGYL--------LHTSISL--CRKLLNPKCPLL 160
A++D++ E+ CVD S +++ + G+L L ++ L + L ++
Sbjct: 136 VADRDLDVELSCVDPSTTRDWTHKDVYFGHLAPVDGCCGLQATVPLWQAKSLQATNSTVM 195
Query: 161 KQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
L + E +IG+NG+ WI + + V V ++ LS + +C +
Sbjct: 196 ASLGRHF--VFESAIGVNGRCWISAAAPNVAVMVSRILSGSHKLSQAHMEAMCSKM 249
>gi|297821935|ref|XP_002878850.1| hypothetical protein ARALYDRAFT_320337 [Arabidopsis lyrata subsp.
lyrata]
gi|297324689|gb|EFH55109.1| hypothetical protein ARALYDRAFT_320337 [Arabidopsis lyrata subsp.
lyrata]
Length = 702
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAG 108
Q Y+P D V+G+V G+NY VDI A+L LAFEGA K+N PK E
Sbjct: 553 QIEYIPRPEDHVLGIVVDCKGENYWVDIKGPQLALLPVLAFEGANKRNYPKFEA------ 606
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRS 167
GK + G L DG++ TS L R LL +P CP+L+ L K
Sbjct: 607 -----------------KSGKAAVFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGK-- 647
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
+ E + G+NG+ W+ + + V N +M+ E LS
Sbjct: 648 KLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLS 685
>gi|356573669|ref|XP_003554980.1| PREDICTED: putative exosome complex component rrp40-like [Glycine
max]
Length = 162
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 16/150 (10%)
Query: 57 GDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD 116
GD +G+V N+ VDI L LAFEG T++N P+ E G ++ +++ AN
Sbjct: 12 GDGPLGIVVDSRSHNFLVDIKDQLWHFLPVLAFEGGTRRNIPRFEIGTLIYVQVVKANPG 71
Query: 117 MESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSI 175
M E+ C D+ G G L DGY+ ++ L R LLN P CP+L L
Sbjct: 72 MNPELSCTDASGIAAEFGGLKDGYMFPCTMGLSRMLLNSPTCPVLDGL------------ 119
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
G++W+ S T+ V N IM+ E LS
Sbjct: 120 ---GQVWVNATSPHTTILVANEIMNSETLS 146
>gi|25412304|pir||D84647 hypothetical protein At2g25350 [imported] - Arabidopsis thaliana
Length = 728
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 19/158 (12%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAG 108
Q YVP D V+G+V G+NY +DI A+L LAFEGA ++N PK E
Sbjct: 572 QIEYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFE------A 625
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRS 167
KLL V GK G L DG++ TS L R LL +P CP+L+ L K
Sbjct: 626 KLLDN----------VIESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGK-- 673
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
+ E + G+NG+ W+ + + V N +M+ E LS
Sbjct: 674 KLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLS 711
>gi|367021442|ref|XP_003660006.1| hypothetical protein MYCTH_2115531 [Myceliophthora thermophila ATCC
42464]
gi|347007273|gb|AEO54761.1| hypothetical protein MYCTH_2115531 [Myceliophthora thermophila ATCC
42464]
Length = 250
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + I+ + +G ++ + + +++Y RY+P D+V+ V D
Sbjct: 28 LRLGPGLRHIPPTDIVPTVAGQLMTNPVKNSMWIEYNSNRYIPAPNDIVLAQVLRSTTDF 87
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-GK 129
Y + H PA L +LAFE ATKK P + G +V ++ ANK M+ E+ CV+S GK
Sbjct: 88 YLCTLSPHTAPATLPHLAFESATKKTRPVLAPGQLVYARVTVANKHMDPELECVNSSTGK 147
Query: 130 EFIMG-ILNDGYLLHTSISLCRKLLNPK--------CPLLKQLAKRSRQKMELSIGMNGK 180
+G + G + S+ R+LL + + + E ++G NGK
Sbjct: 148 AEGLGPVTGPGCVFDVSLGFARRLLMARSREDGGIAVLEMLGGEEGGGLAFETAVGRNGK 207
Query: 181 IWIRCESFSDTVRVGNLIMSCE 202
+W+ ES V VG + +
Sbjct: 208 VWVGSESARTVVLVGRALQETD 229
>gi|7229638|gb|AAF42918.1|AF229833_1 apoptosis-related protein PNAS-3, partial [Homo sapiens]
Length = 79
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 6/74 (8%)
Query: 35 LRHAKPFT------YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA 88
LRH +P + Y+VD Q+RYVP +GD VIG+VT++ GD ++VD+G +PA LSYL+
Sbjct: 1 LRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLS 60
Query: 89 FEGATKKNPPKVET 102
FEGATK+N P V+
Sbjct: 61 FEGATKRNRPNVQA 74
>gi|440637211|gb|ELR07130.1| hypothetical protein GMDG_02399 [Geomyces destructans 20631-21]
Length = 243
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 11/197 (5%)
Query: 16 LGPGLRR--ESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
LGPGLR ++ V + + + +V++ RY+PT GDLVI V D Y
Sbjct: 28 LGPGLRHIPPNTITPVVAGQLCTDTRKNSIWVEFNGGRYIPTVGDLVIATVHHSSVDVYY 87
Query: 74 VDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-GKEF 131
I + A L L+FEGATKKN P + G ++ ++ ANK M+ E+ CV S GK
Sbjct: 88 ASITDYTSYASLPQLSFEGATKKNRPVLVQGSLIYARVSLANKHMDPELECVSSSTGKSD 147
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCP------LLKQLAKRSRQKMELSIGMNGKIWIRC 185
+G+L G L S+ + R+L+ PK +L++L + E+++G NGK+W+
Sbjct: 148 GLGLLTGGMLFTVSLVMARRLMMPKPTEQGKLVVLEELGD-AGVAFEIAVGRNGKVWVNS 206
Query: 186 ESFSDTVRVGNLIMSCE 202
++ T+ VG I +
Sbjct: 207 KNPKTTLAVGKAIQDTD 223
>gi|294878233|ref|XP_002768324.1| Exosome complex exonuclease RRP40, putative [Perkinsus marinus ATCC
50983]
gi|239870572|gb|EER01042.1| Exosome complex exonuclease RRP40, putative [Perkinsus marinus ATCC
50983]
Length = 255
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 114/236 (48%), Gaps = 23/236 (9%)
Query: 1 MAGDTLSLNA------EPRLILGPGLRRESSAILVSQSGIL--RHAKPFTYYVDYIQRRY 52
+ GDT+ + A +P + G G+R + + +G+L A D ++RY
Sbjct: 18 LPGDTVPIEAGVVSSCDPNSV-GFGIRLDEDCPKAAVAGLLSVESAVSDIPCFDNTRKRY 76
Query: 53 VPTRGDLVIGVVTSRVGDNYRVDI-GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
+P RGD+V+GVV R + YRVDI G A L LAF GATK++ P + GD+V +
Sbjct: 77 IPRRGDMVLGVVVQRTAEFYRVDINGPTGTANLPTLAFNGATKRHKPNLSPGDLVYCHVT 136
Query: 112 TANKDMESEMVCVD-SRGKEFIMGILNDGYL--------LHTSISL--CRKLLNPKCPLL 160
A++D++ E+ CVD S +++ + G+L L ++ L + L ++
Sbjct: 137 VADRDLDVELSCVDPSTTRDWTHKDVYFGHLAPVDGCCGLQATVPLWQAKSLQATGSTVM 196
Query: 161 KQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
L + E +IG+NG+ WI + + V V ++ LS + +C +
Sbjct: 197 ASLGRHF--VFESAIGLNGRCWISAAAPNVAVMVSRILSGSHKLSQAHMEAMCSKM 250
>gi|396469774|ref|XP_003838488.1| similar to exosome complex exonuclease Rrp40 [Leptosphaeria
maculans JN3]
gi|312215056|emb|CBX95009.1| similar to exosome complex exonuclease Rrp40 [Leptosphaeria
maculans JN3]
Length = 239
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 8/195 (4%)
Query: 14 LILGPGLRR-ESSAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + ++ + +G L K V+ RY P GDLVI V+S +N
Sbjct: 27 LKLGPGLRHIPPNTVVTTIAGALTIDNKKNAAAVEANTGRYTPYTGDLVIATVSSSAAEN 86
Query: 72 YRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGK 129
+ + H P A L +LAFEGATKK P++ +V ++ +A KD+ E+ CVD S GK
Sbjct: 87 FNCLLSPHTPFATLPHLAFEGATKKTRPQLPPASLVYCRVASAGKDLPPELTCVDPSTGK 146
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPK--CPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
+G+L G L S+ + R++L K PLL+ + S+ E+++G NG + + +
Sbjct: 147 GDGLGLLKGGMLFKISLGMARRMLAAKGGLPLLETMG--SKVGFEVTVGRNGLVHVEGGN 204
Query: 188 FSDTVRVGNLIMSCE 202
T+ VG I +
Sbjct: 205 VRTTLAVGRAIQEVD 219
>gi|156088283|ref|XP_001611548.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798802|gb|EDO07980.1| conserved hypothetical protein [Babesia bovis]
Length = 207
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-AFEGATKKNPPKVETGDVV 106
I + Y P GD VIGVV ++ D Y +DIG A+L + F GATK+N P + GDV+
Sbjct: 29 ISQLYRPKIGDHVIGVVVAKNSDFYSLDIGGLTEAILPAVDGFRGATKRNRPNINEGDVI 88
Query: 107 AGKLLTA--NKDMESEMVCVD------SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP 158
++ ++ E+ C+D KE G L G++ I L +C
Sbjct: 89 FCQITKQYPRNELPVEVSCLDVDDMKQWTTKETYFGSLEGGFMFSVPIPYSYCLSGARCH 148
Query: 159 LLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
+L++ A R K E+++G+NG++WI+ + DT+ + I C LS
Sbjct: 149 VLEKCA--GRFKYEIAVGLNGRVWIKSTNEVDTILIARYIRMCFGLS 193
>gi|322709661|gb|EFZ01237.1| hypothetical protein MAA_03833 [Metarhizium anisopliae ARSEF 23]
Length = 269
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 9/160 (5%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGK 109
+YVP G+LVIG + D Y V + + P +L L+FE ATKK P + G +V +
Sbjct: 90 QYVPRVGELVIGTIHKTAADVYYVHLSDYTAPVILPQLSFESATKKTRPVLAPGALVYAR 149
Query: 110 LLTANKDMESEMVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLLNPKC------PLLKQ 162
+ ANK M++E+ CV S GK +G L G + S+ + R+L+ PK +L++
Sbjct: 150 VTLANKHMDAELECVSSSTGKSDGLGPLTGGMMFDISLGMARRLMMPKSVQEGKIVVLEE 209
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
L Q + + G NG+ W+ E+ + VG I +
Sbjct: 210 LGALGLQ-FDTATGRNGRFWVDSENTKTVLAVGRAIQETD 248
>gi|402075473|gb|EJT70944.1| hypothetical protein GGTG_11967 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 342
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 50/238 (21%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR S+I+ + +G ++ K +V+Y RYVP GDLV+G V D
Sbjct: 31 LRLGPGLRHIPPSSIVPTVAGQVVADGKKTAVWVEYNGGRYVPAAGDLVVGQVHHSSADY 90
Query: 72 YRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV-DSRGK 129
+ V + H P A+L LAFEGAT+K P + G +V ++ A++ M+ E+ CV + GK
Sbjct: 91 HFVSLAPHAPNALLPMLAFEGATRKTRPVLGPGSLVYARVAMASRHMDPELECVSQATGK 150
Query: 130 EFIMGIL---------------------------------------NDGYLLHTSISLCR 150
+G L G + + S+ R
Sbjct: 151 ADGLGPLPSPSAAAAGAPQPQPQQQQQQASGNNGASAPAGAAAVSATTGTVFNVSLGFAR 210
Query: 151 KLLNPKCP------LLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
+LL P+ +L LA E ++G NG++W+ +S V VG + +
Sbjct: 211 RLLMPRAERDAGLVVLDALADEG-LAFETAVGRNGRVWVASDSLPTLVLVGRTLAEVD 267
>gi|320589186|gb|EFX01648.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
Length = 273
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 14 LILGPGLR--RESSAILVSQSGILR-HAKPFTYYVDYIQR--RYVPTRGDLVIGVVTSRV 68
L LGPGLR ++ + G+L + +V+ R RY P GDLV+G V
Sbjct: 25 LRLGPGLRVLLPEGRLVATVPGLLAADRRKNLLWVEAGGRGGRYAPATGDLVVGQVQHAS 84
Query: 69 GDNYRVDIGSHDP----AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV 124
D V + +HD AVL LAF GA++KN P ++ G +V ++ A + M++E+ CV
Sbjct: 85 ADQAVVALAAHDAPPLRAVLPVLAFAGASRKNRPDLQPGTLVYARVAFAARHMDTELECV 144
Query: 125 D-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP-----LLKQLAKRSRQKMELSIGMN 178
D + GK +G L G + S+ + R+LL +L+ LA+ E ++G N
Sbjct: 145 DGTTGKADGLGPLLGGMVFAVSLQMARRLLMASSAASGIVVLEALAQEG-LAFETAVGRN 203
Query: 179 GKIWIRC 185
G++W+R
Sbjct: 204 GRLWVRS 210
>gi|149244019|ref|XP_001526565.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448959|gb|EDK43215.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 302
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 17/185 (9%)
Query: 16 LGPGLRRES--SAILVSQSGILRHAKPFT------YYVDYIQRRYVPTRGDLVIGVVTSR 67
+GPG+ + ++ S SGIL H Y++ +RY+P D V+G V
Sbjct: 42 IGPGIYKMPRLQHLIPSTSGILHHQYQSNKNNAELVYIESDTKRYIPRNNDFVVGTVVGS 101
Query: 68 VGDNYRVDIGSH-DPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD--MESEMVCV 124
VGD Y+V + P +L ++AF ATKKN P + G V +++ + D E+E+ C
Sbjct: 102 VGDFYKVQLQQFLSPVLLPFMAFPSATKKNRPNLNIGQCVYARVINDDNDSTFETELSCT 161
Query: 125 DSRGKEFI--MGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSIGMNGK 180
D+ G+L++ G++ ++ R+LL N K +L LA +R + E+++G+NG+
Sbjct: 162 DAMNSRESGGFGVLDELGFVFDLKLAFARELLYNAKLNVLSTLA--TRVQFEIAVGINGR 219
Query: 181 IWIRC 185
+WI+C
Sbjct: 220 VWIKC 224
>gi|296412677|ref|XP_002836048.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629850|emb|CAZ80205.1| unnamed protein product [Tuber melanosporum]
Length = 273
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 40/239 (16%)
Query: 16 LGPGLRRES-SAILVSQSGILR-HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
+GPGL S S ++VS++G L + T +++ +RYV ++ D +I V D+Y
Sbjct: 28 VGPGLTHISPSTLIVSRAGELNIDQRKHTIWMESNSKRYVASQNDAIIATVLRSTADSYI 87
Query: 74 VDIGSHDP-------AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
I S + AVL +LAF ATKK P + G VV ++ ANK ++ E+ C D+
Sbjct: 88 CAIPSSNSPVPSASQAVLPHLAFPQATKKTRPVLHQGSVVYARISLANKHIDPELECYDA 147
Query: 127 -RGKEFIMGILNDGYLLHTSISLCRKLLN--PKCPLLKQLAKRSRQ-------------- 169
GK G L G++ S+ + R+LL K LL+ +++
Sbjct: 148 DSGKSEGFGELKGGFVFGVSLGMARRLLGDAKKTRLLRVRERKAEAGRKGEEYQDVGVDM 207
Query: 170 --------------KMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCE 214
EL++G NG+IW+ T+ V I E L+ +E L +
Sbjct: 208 SSGREVLEELGESLSFELAVGRNGRIWVHSGDPKTTLCVMRCIQQSEFLTGKEQRQLVK 266
>gi|189202700|ref|XP_001937686.1| exosome complex exonuclease RRP40 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984785|gb|EDU50273.1| exosome complex exonuclease RRP40 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 239
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 11/213 (5%)
Query: 1 MAGDTLSLNAEPR-------LILGPGLRRESSAILVS--QSGILRHAKPFTYYVDYIQRR 51
+ GD +S +A P L LGPGLR + + ++ K V+ R
Sbjct: 7 LPGDDISKSALPTGTGKKKTLTLGPGLRHTPPDTVTATIAGALVTDNKKNAASVESNTGR 66
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKL 110
Y P GDLVI V +N+ + + PAV L +LAFEGATKK P++ +V ++
Sbjct: 67 YRPFTGDLVIATVNGSAAENFNCLLTPNTPAVTLPHLAFEGATKKTRPQLPPNSLVYCRI 126
Query: 111 LTANKDMESEMVCVD-SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQ 169
+A KD+ SE+ CVD + GK +G+L G + + S+ + R++L + + ++
Sbjct: 127 ASAGKDLPSELTCVDPATGKGEGLGLLKGGMVFNVSLGMARRMLAARGGITLLQTMGAKL 186
Query: 170 KMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
E+++G NG + + + T+ +G I +
Sbjct: 187 GFEVTVGRNGLVHVDGGNVKTTLAIGQAIQEVD 219
>gi|124088764|ref|XP_001347226.1| Exosomal 3'-5' exoribonuclease complex subunit [Paramecium
tetraurelia strain d4-2]
gi|145474047|ref|XP_001423046.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057615|emb|CAH03599.1| Exosomal 3'-5' exoribonuclease complex subunit, putative
[Paramecium tetraurelia]
gi|124390106|emb|CAK55648.1| unnamed protein product [Paramecium tetraurelia]
Length = 238
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
Y P D VI VT + + Y D+G+ L+ + FEGATKKN P ++ G ++ +++
Sbjct: 65 YTPEIEDYVIVQVTGKNSEYYFCDLGNGLVYNLNQMDFEGATKKNKPNIQVGQLLYARVI 124
Query: 112 TANKDMESEMVCVDSRGK------EFIMGILNDGYLLHTSISLCRKLLNP--KCPLLKQL 163
N ++ ++ C++ + K E + L G ++ ++ + LL+ K L K++
Sbjct: 125 ELNHYLKGKLSCINPQSKKEWTTGENLFRELTGGVIVDLPLNFVQSLLSSQTKPELFKEI 184
Query: 164 AKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
+K S E+ +G NG++WI+ D V + NL+ C L E+ LNL +F Q
Sbjct: 185 SKHSS--FEVCVGKNGRVWIKG---VDAVLIINLLKRCAPLPLEQQLNLIHKFASQFQQ 238
>gi|403349194|gb|EJY74038.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Oxytricha trifallax]
Length = 270
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 10/152 (6%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
RY P D+VIG V + + + +DI S A LS L F+ +T+K+ P+ G ++ ++
Sbjct: 94 RYTPQENDVVIGTVIQKSPEFFTIDINSESYAQLSTLEFQNSTRKDRPQYPEGTLIYCRV 153
Query: 111 LTANKDMESEMVCVDSRGK------EFIMGILNDGYLLHTSISLCRKLLNPKCP--LLKQ 162
L K + ++ C+ K E G L +G++ I+ CR+LL +L +
Sbjct: 154 LRCEKFSKPQLSCISLTHKKAWNSGEAYFGNLTEGFVKDFPIAFCRQLLANSSSEGILDK 213
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L +R + +++IG NGKIW++ +T+ +
Sbjct: 214 LGERI--QYDINIGYNGKIWVKTAKIQETIFI 243
>gi|54299383|ref|NP_983900.2| ADL196Wp [Ashbya gossypii ATCC 10895]
gi|51890954|gb|AAS51724.2| ADL196Wp [Ashbya gossypii ATCC 10895]
gi|374107113|gb|AEY96021.1| FADL196Wp [Ashbya gossypii FDAG1]
Length = 139
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 87 LAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-GKEFIMGILNDGYLLHTS 145
+AF A+KKN P ++ GD+ ++ +A KD+E+ + C+DS G++ G L+ G + S
Sbjct: 1 MAFPNASKKNRPTLKVGDLCYARVSSAEKDLEAVLECMDSSTGRDAGFGQLDGGMVAEVS 60
Query: 146 ISLCRK-LLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
+ R+ LLN PLL ++A+ + + E++IG+NGKIW++ E+ T+ I +C+
Sbjct: 61 LGFARELLLNEAFPLLPEMARHA--QFEVAIGVNGKIWVKAETVRTTLCCIRAIEACQ 116
>gi|388857868|emb|CCF48533.1| related to RRP40-protein involved in ribosomal RNA processing,
component of the exosome complex [Ustilago hordei]
Length = 291
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
++V+ RYVP GD VI +T+R ++Y + + S A L L+FEGATK++ P +
Sbjct: 66 FWVETNTSRYVPAPGDPVIAQITNRGSESYTLTLFSSHSATLPALSFEGATKRHKPNLRI 125
Query: 103 GDVVAGKLLTANKDMESEMVCVDS-RGKEFIMGILND----------GYLLHTSISLCRK 151
G +V ++LTA++ E E+ CV+ GK G L L ++ L +
Sbjct: 126 GSLVYARILTADRFTEPELTCVNPVTGKSDGFGDLKTTDERGEKNGVAMLFRVTLGLAKT 185
Query: 152 LLNPKCPLLKQLAKRSRQKM---ELSIGMNGKIWIRCESFSDTVRVGNLIMSCEL 203
LL K + + + E ++G NG +W+R + +G ++ + E+
Sbjct: 186 LLAGKGGRGGEGLLKLVAAVFPFEAAVGANGVVWVRANETRHVLALGKVLYAAEV 240
>gi|387594477|gb|EIJ89501.1| hypothetical protein NEQG_00271 [Nematocida parisii ERTm3]
Length = 267
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
Y+V+Y Q RY+P D+V+GVV + D Y+VDIG A+++YL F ATK+N + T
Sbjct: 123 YWVNYKQFRYLPLLDDIVLGVVKGKGKDTYKVDIGGPSYAIINYLDFPSATKRNRVTLCT 182
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFI--MGILNDGYLLHTSISLCRK-LLNP 155
GDV+ G+++ + ES + C E I MG+L +G LL I RK LL+P
Sbjct: 183 GDVLLGQVVEDSLHCESVISC----RTEAIPGMGVLKNGVLLKVGILQSRKYLLHP 234
>gi|224000105|ref|XP_002289725.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974933|gb|EED93262.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 363
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 36/203 (17%)
Query: 48 IQRRYVPTRGDLVIGVVTSR--VGDNYRVDI-GSHDPAVLSYLAFEGATKKNPPKVETGD 104
I+ +++ GD VIG++ + D YRV I GSH A+L L+FEGATK+N P++E G
Sbjct: 153 IKNKHMAGVGDRVIGIIEDQKASADYYRVQIFGSHS-ALLHVLSFEGATKRNRPQLEPGC 211
Query: 105 VVAGKLLTA--NKDMESEMVCV-----------------------------DSRGKEFIM 133
+V +++ M+ E+ C D E
Sbjct: 212 LVYFRVVKGFGGGRMDPEVSCKVGGSGGGGSSGGKSTFNEDENDDGGASRKDWLTNEGTY 271
Query: 134 GILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVR 193
G LN G S+ L R+LLNPK +L L K S E++IG+NG +W+ T+
Sbjct: 272 GPLNGGTSFRISLGLARELLNPKNAVLAALDK-SGIPFEIAIGVNGMVWVNSPEAEYTII 330
Query: 194 VGNLIMSCELLSYEEILNLCESI 216
+ N I + E+++ E++ + +++
Sbjct: 331 ILNAIKNSEVMNEEQVRGMVKAL 353
>gi|387596683|gb|EIJ94304.1| hypothetical protein NEPG_00971 [Nematocida parisii ERTm1]
Length = 273
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
Y+V+Y Q RY+P D+V+GVV + D Y+VDIG A+++YL F ATK+N + T
Sbjct: 129 YWVNYKQFRYLPLLDDIVLGVVKGKGKDTYKVDIGGPSYAIINYLDFPSATKRNRVTLCT 188
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFI--MGILNDGYLLHTSISLCRK-LLNP 155
GDV+ G+++ + ES + C E I MG+L +G LL I RK LL+P
Sbjct: 189 GDVLLGQVVEDSLHCESVISC----RTEAIPGMGVLKNGVLLKVGILQSRKYLLHP 240
>gi|389586008|dbj|GAB68737.1| exosomal 3'-5' exoribonuclease complex subunit, partial [Plasmodium
cynomolgi strain B]
Length = 228
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 32 SGILRHAK--PFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-A 88
SGIL A P+ Y + +Y+P GDLVIG+V S+ D Y++DI + ++ + +
Sbjct: 44 SGILLKAPYYPYKYDIMNTSYKYMPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIDS 103
Query: 89 FEGATKKNPPKVETGDVVAGKLLTANKDMESEMV-CVDSR------GKEFIMGILNDGYL 141
F+ ATK + P + G ++ L N D S + C+ S E +G L DGY+
Sbjct: 104 FKYATKSSFPNLSNGTLLYMILEKINLDNNSVVASCISSSDVKSWINYENYLGELVDGYM 163
Query: 142 LHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLI 198
SIS R L+ KC +L + + E+++G NG++WI+ +D R N+I
Sbjct: 164 FPVSISYARSLIGDKCYILDLIG--TDVSYEVAVGHNGRVWIK----TDDPRETNMI 214
>gi|358368706|dbj|GAA85322.1| exosome complex exonuclease Rrp40 [Aspergillus kawachii IFO 4308]
Length = 278
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVA 107
RRY+PT DLVI V D + I P AVL L+FEGATKK P ++ GD+V
Sbjct: 76 NRRYIPTVNDLVIAQVHHSSVDYFHCMITPQAPHAVLGQLSFEGATKKTRPMLKQGDLVY 135
Query: 108 GKLLTA--NKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP---- 158
++L+ E E+ CV+ + + +G LN G + S + +L+
Sbjct: 136 ARVLSVGLGAGAEVELACVNPATGKAEPGGLGQLNGGMVFDVSTGMAARLMRASSSSSDS 195
Query: 159 --------LLKQLAKRSRQK--MELSIGMNGKIWIRCESFSDT 191
+L++L K+ + E+++G NGK+W+ C S +T
Sbjct: 196 QDGVAGLVVLEELGKKLEKSGGFEIAVGRNGKVWVDCSSGGET 238
>gi|145238162|ref|XP_001391728.1| exosome complex exonuclease Rrp40 [Aspergillus niger CBS 513.88]
gi|134076209|emb|CAK39496.1| unnamed protein product [Aspergillus niger]
Length = 279
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVA 107
RRY+PT DLVI V D + I P AVL L+FEGATKK P ++ GD+V
Sbjct: 77 NRRYIPTVNDLVIAQVHHSSVDYFHCMITPQAPHAVLGQLSFEGATKKTRPMLKQGDLVY 136
Query: 108 GKLLTA--NKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP---- 158
++L+ E E+ CV+ + + +G LN G + S + +L+
Sbjct: 137 ARVLSVGLGAGAEVELACVNPATGKAEPGGLGQLNGGMVFDISTGMAARLMRASSSSSES 196
Query: 159 --------LLKQLAKRSRQK--MELSIGMNGKIWIRCESFSDT 191
+L +L K+ + E+++G NGK+W+ C S +T
Sbjct: 197 QEGVAGLVVLDELGKKLEKSGGFEIAVGRNGKVWVDCSSGGET 239
>gi|350635750|gb|EHA24111.1| hypothetical protein ASPNIDRAFT_39846 [Aspergillus niger ATCC 1015]
Length = 279
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVA 107
RRY+PT DLVI V D + I P AVL L+FEGATKK P ++ GD+V
Sbjct: 77 NRRYIPTVNDLVIAQVHHSSVDYFHCMITPQAPHAVLGQLSFEGATKKTRPMLKQGDLVY 136
Query: 108 GKLLTA--NKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP---- 158
++L+ E E+ CV+ + + +G LN G + S + +L+
Sbjct: 137 ARVLSVGLGAGAEVELACVNPATGKAEPGGLGQLNGGMVFDISTGMAARLMRASSSSSES 196
Query: 159 --------LLKQLAKRSRQK--MELSIGMNGKIWIRCESFSDT 191
+L +L K+ + E+++G NGK+W+ C S +T
Sbjct: 197 QEGVAGLVVLDELGKKLEKSGGFEIAVGRNGKVWVDCSSGGET 239
>gi|121710720|ref|XP_001272976.1| exosome complex exonuclease Rrp40, putative [Aspergillus clavatus
NRRL 1]
gi|119401126|gb|EAW11550.1| exosome complex exonuclease Rrp40, putative [Aspergillus clavatus
NRRL 1]
Length = 280
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 27/221 (12%)
Query: 9 NAEPRLILGPGLRRESSAILVSQSGILR--HAKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
+A P GP + +Q+GIL H K + + RY+PT DLVI V
Sbjct: 36 SAAPPTTSGPSASSPGHVLAATQAGILSIDHKKNAVSILSFPNGRYIPTPNDLVIAQVHH 95
Query: 67 RVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTA--NKDMESEMVC 123
D + I P AVL LAFEGATKK P ++ GD+V ++L+ E E+ C
Sbjct: 96 SSVDYFYCMITPQSPHAVLGQLAFEGATKKTRPMLKQGDLVYARVLSMGLGAGAEVELTC 155
Query: 124 VD---SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP------------LLKQLAKRSR 168
V+ + + +G L G + S + +L+ +L++L K+
Sbjct: 156 VNPATGKAEPGGLGPLTGGMVFDISTGMAARLMRASSSTAEQQDGVAGLVVLEELGKKLE 215
Query: 169 Q--KMELSIGMNGKIWIRCESFSD-----TVRVGNLIMSCE 202
+ E+++G NGK+W+ C + D TV +G + + +
Sbjct: 216 KVGGFEIAVGRNGKVWVDCSNGGDAAVKATVAIGQCLTTID 256
>gi|330920519|ref|XP_003299040.1| hypothetical protein PTT_09951 [Pyrenophora teres f. teres 0-1]
gi|311327455|gb|EFQ92873.1| hypothetical protein PTT_09951 [Pyrenophora teres f. teres 0-1]
Length = 239
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 4/193 (2%)
Query: 14 LILGPGLRRESSAILVS--QSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + + ++ K V+ RY P GDLVI V +N
Sbjct: 27 LTLGPGLRHTPPDTVTATIAGALVTDNKKNAASVESNTGRYRPFTGDLVIATVNGSAAEN 86
Query: 72 YRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
+ + + PA L +LAFEGATKK P++ +V ++ +A KD+ SE+ CVD +
Sbjct: 87 FNCLLTPNTPAATLPHLAFEGATKKTRPQLPPNSLVYCRVASAGKDLPSELTCVDPATGK 146
Query: 131 FIMGILNDGYLLHT-SISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFS 189
L G ++ + S+ + R++L + + ++ E+++G NG + + +
Sbjct: 147 GEGLGLLKGGMVFSVSLGMARRMLAARGGITLLQTMGAKLGFEVTVGRNGLVHVDGGNVK 206
Query: 190 DTVRVGNLIMSCE 202
T+ +G I +
Sbjct: 207 TTLAIGQAIQEVD 219
>gi|221060787|ref|XP_002261963.1| exosomal 3'-5' exoribonuclease complex subunit [Plasmodium knowlesi
strain H]
gi|193811113|emb|CAQ41841.1| exosomal 3'-5' exoribonuclease complex subunit,putative [Plasmodium
knowlesi strain H]
Length = 244
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 16/185 (8%)
Query: 32 SGILRHA--KPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-A 88
SGIL A P+ Y + +Y+P GDLVIG+V S+ D Y++DI + ++ + +
Sbjct: 44 SGILLKAPYYPYKYDIMNTSYKYMPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIES 103
Query: 89 FEGATKKNPPKVETGDVVAGKLLTANKDMESEMV-CVDSR------GKEFIMGILNDGYL 141
F+ ATK + P + G ++ + N D S + C++S E +G L DGY+
Sbjct: 104 FKYATKSSFPNLANGTLLYMIVEKINLDNNSVVASCINSSDVKSWINYENYLGELVDGYM 163
Query: 142 LHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
SI+ + L+ KC +L + + E+++G NG++WI+ +D R N+I +
Sbjct: 164 FPVSIAYAKSLIGDKCYILDLIG--TDISYEVAVGHNGRVWIK----TDDPRETNMIHTA 217
Query: 202 ELLSY 206
SY
Sbjct: 218 LRYSY 222
>gi|169783356|ref|XP_001826140.1| exosome complex exonuclease Rrp40 [Aspergillus oryzae RIB40]
gi|238493131|ref|XP_002377802.1| exosome complex exonuclease Rrp40, putative [Aspergillus flavus
NRRL3357]
gi|83774884|dbj|BAE65007.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220696296|gb|EED52638.1| exosome complex exonuclease Rrp40, putative [Aspergillus flavus
NRRL3357]
gi|391865003|gb|EIT74295.1| exosome complex exonuclease Rrp40 [Aspergillus oryzae 3.042]
Length = 272
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 26/204 (12%)
Query: 18 PGLRRESSAILVSQSGILR--HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
P S I +Q G+L + + + RRY+PT GDLVI + D +
Sbjct: 38 PSSNPPSHVITATQPGLLSTDNKRNAVSILSTPNRRYLPTPGDLVIAQIHHSSPDYFHCM 97
Query: 76 IGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTA--NKDMESEMVCVD-SRGK-E 130
I P A+L L+FEGATKK P ++ GD+V ++L+ E E+ CV+ + G+ +
Sbjct: 98 ITPQAPQALLGQLSFEGATKKTRPMLKQGDLVYARVLSTGLGAGAEVELTCVNPATGRAD 157
Query: 131 FIMGILNDGYLLHTSISLCRKLLNPKCP------------LLKQLAKRSRQK--MELSIG 176
+G L G + S L +L+ +L +L K+ + E+++G
Sbjct: 158 GGLGPLTGGMVFDVSTGLAARLIKASSSSAEQQDGVAGLVVLDELGKKLEKAGGFEIAVG 217
Query: 177 MNGKIWIRCESFSD-----TVRVG 195
NGK+W+ C + D TV +G
Sbjct: 218 RNGKVWVDCANGGDYAVKATVAIG 241
>gi|261203973|ref|XP_002629200.1| exosome complex exonuclease Rrp40 [Ajellomyces dermatitidis
SLH14081]
gi|239586985|gb|EEQ69628.1| exosome complex exonuclease Rrp40 [Ajellomyces dermatitidis
SLH14081]
gi|239608783|gb|EEQ85770.1| exosome complex exonuclease Rrp40 [Ajellomyces dermatitidis ER-3]
gi|327355435|gb|EGE84292.1| exosome complex exonuclease Rrp40 [Ajellomyces dermatitidis ATCC
18188]
Length = 281
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 24/204 (11%)
Query: 5 TLSLNAEPRLILGPGLRRESSAILVSQSGIL-----RHAKPFTYYVDYIQRRYVPTRGDL 59
T L++ R++ P + ++ I +Q+G+L R+A T + + QRRY+P+ DL
Sbjct: 28 TTKLSSGLRVLETPANKTNTTLITATQAGLLTTDPKRNA--LTLHT-FPQRRYIPSPNDL 84
Query: 60 VIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLT---ANK 115
+I + D + I H P A+L LAFEGAT+K P ++ GD+V ++L+ N
Sbjct: 85 LIAQIHHSSVDYFHCTITPHTPHALLGQLAFEGATRKTRPLLKHGDLVYARVLSTGVGNT 144
Query: 116 DMESEMVCVDS---RGKEFIMGILNDGYLLHTSISLCRKLL-------NPKCPLLKQLAK 165
E E+ CV+ + + +G L G L S L +L+ +L++L
Sbjct: 145 GGEVELTCVNPATRKAEPGGLGPLVGGMLFDISTGLAERLMMRGGSEGGSGVVVLEELGS 204
Query: 166 R--SRQKMELSIGMNGKIWIRCES 187
+ S+ E+++G NGK+W+ C +
Sbjct: 205 KLESQGGFEVAVGRNGKVWVDCSA 228
>gi|209876157|ref|XP_002139521.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555127|gb|EEA05172.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 261
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 49/223 (21%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDY------IQRRYVPTRGDLVIGVVTSRVGD 70
G + + + SGI K TYY Y + Y+P +GD+++G V +++GD
Sbjct: 17 GDDIELDGKKHICKNSGI----KCRTYYWPYNEIIIGLNGIYIPNKGDIIVGTVLNKIGD 72
Query: 71 NYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN-KDMESEMVCVDSRGK 129
Y+V I + A+L +AFEGATK+N P ++ G+ + ++ ++ E E+ C+ K
Sbjct: 73 LYKVSINAPYNAILHNMAFEGATKRNKPNIDIGNHICARISYSDISSGEIELTCITPEEK 132
Query: 130 ------EFIMGIL--------------------------NDGYLLHTSISLCRKLLNPKC 157
E +G+L DG +++ ISL LL C
Sbjct: 133 RIWTSNENYLGLLKNKNIINISNNTKKILDNKNIQYKCIKDGIIMNIPISLTNILLADHC 192
Query: 158 PLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMS 200
+L ++K E+ +G N IW + TV+ LIMS
Sbjct: 193 YILNTISKYF--PFEICVGQNSIIWFT----ASTVQQLLLIMS 229
>gi|344236095|gb|EGV92198.1| Exosome complex exonuclease RRP40 [Cricetulus griseus]
Length = 102
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 117 MESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
ME EMVC+DS G+ MG++ DG L ++ L RKLL P C ++++L K +E+
Sbjct: 1 MEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIVQELGKLY--PLEIVF 58
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 59 GMNGRIWVKAKTIQQTLILANVLEACEHMTTDQ 91
>gi|255934802|ref|XP_002558428.1| Pc12g16300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583047|emb|CAP81257.1| Pc12g16300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 272
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 34/226 (15%)
Query: 4 DTLSLNAEPRLILGPGLR-------RESSAIL-VSQSGILR-HAKPFTY-YVDYIQRRYV 53
D L N L LGPGLR + SS +L +Q+G+L AK T + + RRY+
Sbjct: 16 DHLPTNNSNPLRLGPGLRILSQPSSKGSSHVLTATQAGLLTTDAKRNTVSLLSFPNRRYI 75
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112
PT D VI + D + + H A+L L+FEGA+KK P ++ G++V ++ +
Sbjct: 76 PTVNDFVIAQIHHSSVDFFHCMVTPHTAHALLGQLSFEGASKKTRPMLKQGELVYARVQS 135
Query: 113 --ANKDMESEMVCVD-SRGK-EFIMGILNDGYLLHTSISLCRKLLNPKCP---------- 158
E E+ CV+ + GK + +G L G + S + +L+
Sbjct: 136 VGVGAGAEVELTCVNPATGKADGGLGPLTGGMVFDVSTGMAARLIRASSSSAEHNDAIEG 195
Query: 159 --LLKQLAKR--SRQKMELSIGMNGKIWIRCESFSD-----TVRVG 195
+L +L K+ S E+++G NGK+W+ C + ++ TV VG
Sbjct: 196 LVVLSELGKKLESLGGFEIAVGRNGKVWVDCSNAAESAVKVTVAVG 241
>gi|302921030|ref|XP_003053201.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734141|gb|EEU47488.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 224
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 30/198 (15%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + I+ + +G ++ + V+ + RY P G+LVIG V +
Sbjct: 27 LRLGPGLRHVPPNDIVPTIAGQLVTDRQKNAIRVENARGRYTPRVGELVIGTVQRSAAEI 86
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
+ V + + PA+L L+FEGATKK P+ +V G L+ A D
Sbjct: 87 FYVTLSDYTAPALLPQLSFEGATKKTRPQ-----LVPGALVYARADG------------- 128
Query: 131 FIMGILNDGYLLHTSISLCRKLLNPKC------PLLKQLAKRSRQKMELSIGMNGKIWIR 184
+G L G L + S+ + R+L+ PK +L++L Q E + G NGK W+
Sbjct: 129 --LGPLTGGMLFNVSLGMARRLMMPKSVQEGRIAVLEELGAAGLQ-FETATGRNGKFWVD 185
Query: 185 CESFSDTVRVGNLIMSCE 202
ES + VG + +
Sbjct: 186 SESTKTVIAVGRAVQETD 203
>gi|156102615|ref|XP_001617000.1| exosomal 3'-5' exoribonuclease complex subunit [Plasmodium vivax
Sal-1]
gi|148805874|gb|EDL47273.1| exosomal 3'-5' exoribonuclease complex subunit, putative
[Plasmodium vivax]
Length = 244
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 32 SGILRHAK--PFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-A 88
SGIL P+ Y + +Y+P GDLVIG+V S+ D Y++DI + ++ + +
Sbjct: 44 SGILLKTPYYPYKYDIMNTSYKYMPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIES 103
Query: 89 FEGATKKNPPKVETGDVVAGKLLTANKDMESEMV-CVDSR------GKEFIMGILNDGYL 141
F+ ATK + P + G ++ + N D S + C++S E +G L DGY+
Sbjct: 104 FKYATKNSFPNLANGTLLYMIVEKINLDNNSVVASCINSSDVKSWINYENYLGELVDGYM 163
Query: 142 LHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMS 200
SIS + L+ KC LL + + E+++G NG++W++ +D R N+I +
Sbjct: 164 FPVSISYAKSLIGDKCYLLDLIG--ADVSYEVAVGHNGRVWVK----TDDPRETNMIHT 216
>gi|378756655|gb|EHY66679.1| hypothetical protein NERG_00319 [Nematocida sp. 1 ERTm2]
Length = 221
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 17/164 (10%)
Query: 21 RRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHD 80
R+ SSA G L ++V++ Q RY+P D+V+G+V + + Y+VDIG+
Sbjct: 59 RKTSSAF-----GELLSLDKHNFWVNFKQFRYIPLLDDIVLGIVKGKGKETYKVDIGAPS 113
Query: 81 PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGY 140
A+++YL F ATK+N + GDV+ +++ E+ + C K MG+L G
Sbjct: 114 YAIINYLDFPTATKRNRVSLNVGDVILAQVVEDAPHAEAVISCKTEAVKG--MGLLKGGA 171
Query: 141 LLHTSISLCRK-LLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
L I RK LLNP P L A MNG WI
Sbjct: 172 ALKVGILQSRKYLLNP--PALNVSATS-------LFSMNGYAWI 206
>gi|425768354|gb|EKV06879.1| Exosome complex exonuclease Rrp40, putative [Penicillium digitatum
Pd1]
gi|425770314|gb|EKV08787.1| Exosome complex exonuclease Rrp40, putative [Penicillium digitatum
PHI26]
Length = 272
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 29/218 (13%)
Query: 4 DTLSLNAEPRLILGPGLR-------RESSAIL-VSQSGILR-HAKPFTY-YVDYIQRRYV 53
D L +N L LGPGLR + S+ +L +Q+G+L AK T + + RRY+
Sbjct: 16 DHLPINNSNPLRLGPGLRILSQPSSKGSNHVLTATQAGLLTTDAKRNTVSLLSFPNRRYI 75
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKL-- 110
PT D VI + D + + H A+L L+FEGA+KK P ++ G++V ++
Sbjct: 76 PTVNDFVIAQIHHSSVDFFHCMVTPHTAHALLGQLSFEGASKKTRPMLKQGELVYARVQS 135
Query: 111 LTANKDMESEMVCVD-SRGK-EFIMGILNDGYLLHTSISLCRKLLNPKC----------- 157
+ E E+ CV+ + GK + +G L G + S + +L+
Sbjct: 136 VGVGAGAEVEITCVNPATGKADGGLGPLTGGMVFDVSTGMAARLIRASSSSAENTDAIEG 195
Query: 158 -PLLKQLAKR--SRQKMELSIGMNGKIWIRCESFSDTV 192
+L +L K+ S E+++G NGK+W+ C + +++
Sbjct: 196 LAVLSELGKKLESLGGFEIAVGRNGKVWVDCSNAAESA 233
>gi|315054159|ref|XP_003176454.1| exosome complex exonuclease RRP40 [Arthroderma gypseum CBS 118893]
gi|311338300|gb|EFQ97502.1| exosome complex exonuclease RRP40 [Arthroderma gypseum CBS 118893]
Length = 270
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 38/226 (16%)
Query: 1 MAGDTLSLNAEPRLILGPGL------------RRESSAILVSQSGIL-----RHAKPFTY 43
+ GD L L+ LGP L + S I SQ+G+L R+A T
Sbjct: 6 LPGDILQLSQPNAPKLGPNLHLLTSQTQTQEPQPASQLIAASQAGLLTSDSKRNAT--TS 63
Query: 44 YVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVET 102
+ + RY+P + DL+I + D + I + P A L LAFEGATKK P+++
Sbjct: 64 ILPFPSTRYIPCQNDLIIAQIHHSSPDFFHCIISPNSPHAFLGQLAFEGATKKTRPQLKA 123
Query: 103 GDVVAGKLLT--ANKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLL---- 153
G++V ++L+ E E+ CV+ + + +G LN G + S +L+
Sbjct: 124 GELVYARILSVGVGAGGEVELTCVNPATGKAEPDGLGPLNGGMVFDISTLFASRLMMTGP 183
Query: 154 ---NPKCP----LLKQLAKR--SRQKMELSIGMNGKIWIRCESFSD 190
+ P +L++L +R S E+++G NGK+W+ + D
Sbjct: 184 ERQDGAGPGGVIVLEELGRRFESYGGFEIAVGRNGKVWVDSSAEGD 229
>gi|226293637|gb|EEH49057.1| exosome complex exonuclease RRP40 [Paracoccidioides brasiliensis
Pb18]
Length = 279
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 18 PGLRRESSAILVSQSG-ILRHAKPFTYYV-DYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
P +S I+ +Q+G I AK T + + QRRY+P+ DL+I + D +
Sbjct: 40 PANNPSTSIIIPTQAGLITSDAKRNTLTLHSFPQRRYIPSPNDLIIAQIHHTSADYFHCT 99
Query: 76 IGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLT---ANKDMESEMVCVD---SRG 128
I H P A L+ LAFEGAT+K P ++ GD+V ++L+ N E E+ CV+ +
Sbjct: 100 ITPHTPPAFLAQLAFEGATRKTRPFLKHGDLVYARVLSTGIGNAGGEVELTCVNPATGKA 159
Query: 129 KEFIMGILNDGYLLHTSISLCRKLL-------NPKCPLLKQLAKR--SRQKMELSIGMNG 179
+ +G L G + S L +L+ +L++L ++ E+++G NG
Sbjct: 160 EPGGLGQLMGGMVFEISTGLAERLMMRGGSEGGSGIVVLEELGRKLEGHGGFEVAVGRNG 219
Query: 180 KIWIRCES 187
+IW+ C +
Sbjct: 220 RIWVDCSA 227
>gi|68074361|ref|XP_679095.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499752|emb|CAH97937.1| conserved hypothetical protein [Plasmodium berghei]
Length = 249
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 90/172 (52%), Gaps = 14/172 (8%)
Query: 40 PFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-AFEGATKKNPP 98
P+ Y + +Y+P GDLVIG+V S+ D Y++DI S+ ++ + +F+ A+K + P
Sbjct: 54 PYKYDIMNTSHKYIPKIGDLVIGIVKSKKLDYYQMDINSNCECIIHKIESFKYASKSSFP 113
Query: 99 KVETGDVVAGKLLTANKDMESEMV---CVDSR------GKEFIMGILNDGYLLHTSISLC 149
+ G ++ ++ ++++ MV C++S E +G L DG+L +IS
Sbjct: 114 NLLNGTLLY--MIIEKINLDNNMVVASCINSADVKSWINYENYLGELIDGFLFAVNISYA 171
Query: 150 RKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
+ L+ KC +L + K E++IG NG +WI+ +T + + + C
Sbjct: 172 KSLIGDKCYILDLIGKDV--PYEIAIGHNGWVWIKTNDPQETNMIRSALKHC 221
>gi|225678801|gb|EEH17085.1| exosome complex exonuclease RRP40 [Paracoccidioides brasiliensis
Pb03]
Length = 279
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 18 PGLRRESSAILVSQSG-ILRHAKPFTYYVD-YIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
P +S I+ +Q+G I AK T + + QRRY+P+ DL+I + D +
Sbjct: 40 PANNPSTSIIIPTQAGLITSDAKRNTLTLHAFPQRRYIPSPNDLIIAQIHHTSADYFHCT 99
Query: 76 IGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLT---ANKDMESEMVCVD---SRG 128
I H P A L+ LAFEGAT+K P ++ GD+V ++L+ N E E+ CV+ +
Sbjct: 100 ITPHTPPAFLAQLAFEGATRKTRPFLKHGDLVYARVLSTGIGNAGGEVELTCVNPATGKA 159
Query: 129 KEFIMGILNDGYLLHTSISLCRKLL-------NPKCPLLKQLAKR--SRQKMELSIGMNG 179
+ +G L G + S L +L+ +L++L ++ E+++G NG
Sbjct: 160 EPGGLGQLMGGMVFEISTGLAERLMMRGGSEGGSGIVVLEELGRKLEGHGGFEVAVGRNG 219
Query: 180 KIWIRCES 187
+IW+ C +
Sbjct: 220 RIWVDCSA 227
>gi|326474844|gb|EGD98853.1| exosome complex exonuclease Rrp40 [Trichophyton tonsurans CBS
112818]
gi|326477834|gb|EGE01844.1| exosome complex exonuclease RRP40 [Trichophyton equinum CBS 127.97]
Length = 271
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 39/227 (17%)
Query: 1 MAGDTLSLNAEPRLILGPGL-------------RRESSAILVSQSGIL-----RHAKPFT 42
+ GD L L+ LGP L S I SQ+G+L R+A T
Sbjct: 6 LPGDILQLSQPNAPKLGPNLHLLTSQAKSQESQEPTSQIIAASQAGLLASDNKRNAT--T 63
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVE 101
+ + RY+P + DL+I + D + I + P A L LAFEGATKK P+++
Sbjct: 64 SILPFPSARYIPCQNDLIIAQIHHSSPDFFHCIISPNSPHAFLGQLAFEGATKKTRPQLK 123
Query: 102 TGDVVAGKLLT--ANKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLL--- 153
G++V ++L+ E E+ CV+ + + +G LN G + S L +L+
Sbjct: 124 AGELVYARILSVGVGAGGEVELTCVNPATGKAEPDGLGPLNGGMVFDVSTLLASRLMMTG 183
Query: 154 ----NPKCP----LLKQLAKR--SRQKMELSIGMNGKIWIRCESFSD 190
+ P +L++L ++ S E+++G NGK+W+ + D
Sbjct: 184 PERKDGAGPGGVIVLEELGRKFESYGGFEIAVGKNGKVWVDSSAEGD 230
>gi|212543075|ref|XP_002151692.1| exosome complex exonuclease Rrp40, putative [Talaromyces marneffei
ATCC 18224]
gi|210066599|gb|EEA20692.1| exosome complex exonuclease Rrp40, putative [Talaromyces marneffei
ATCC 18224]
Length = 279
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 22/185 (11%)
Query: 27 ILVSQSGILRHAKPFTYYVD---YIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-A 82
I +Q+GIL P V + RRY+PT DL+I V D + I H P A
Sbjct: 55 IQATQAGIL-SIDPNRKSVSVQTFPNRRYIPTVNDLIIAQVQRSSQDFFHCIITPHAPFA 113
Query: 83 VLSYLAFEGATKKNPPKVETGDVVAGKLLT--ANKDMESEMVCVD---SRGKEFIMGILN 137
VL LAFEGA+KK P ++ GD+V ++L+ E E+ CV+ + + +G+L+
Sbjct: 114 VLGQLAFEGASKKTRPNLKQGDLVYARVLSVGVGAGTEVELTCVNPATGKAEPGGLGLLS 173
Query: 138 DGYLLHTSISLCRKLLN----------PKCPLLKQLAKR--SRQKMELSIGMNGKIWIRC 185
G L S L +L+ +L++L K+ S+ E+++G NGK+W+ C
Sbjct: 174 GGMLFDISTGLAARLMKASSSSSSAEATSVVILEELGKKFESKGGFEIAVGRNGKVWVDC 233
Query: 186 ESFSD 190
D
Sbjct: 234 SGSGD 238
>gi|46128535|ref|XP_388821.1| hypothetical protein FG08645.1 [Gibberella zeae PH-1]
Length = 223
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 29/198 (14%)
Query: 14 LILGPGLRR-ESSAILVSQSG-ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + I+ + +G ++ + V+ + RY P G+LVIG + D
Sbjct: 27 LRLGPGLRHVPPNDIIPTLAGQLVTDRQKNAIRVENARGRYTPRVGELVIGTIQRSAADF 86
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
+ V + + PA L L+FEGATKK P+ + AG L+ A K S G
Sbjct: 87 FFVTLSDYTAPAQLPQLSFEGATKKTRPQ-----LAAGALVYARK----------SEG-- 129
Query: 131 FIMGILNDGYLLHTSISLCRKLLNPK------CPLLKQLAKRSRQKMELSIGMNGKIWIR 184
+G L G L + S+ + R+L+ PK +L++L Q E + G NGK W+
Sbjct: 130 --LGPLAGGMLYNVSLGMARRLMMPKSVQEGRVVVLEELGNAGLQ-FETATGRNGKFWVD 186
Query: 185 CESFSDTVRVGNLIMSCE 202
E+ + VG + +
Sbjct: 187 SENVKTVIAVGRAVQETD 204
>gi|397637852|gb|EJK72832.1| hypothetical protein THAOC_05596 [Thalassiosira oceanica]
Length = 436
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 32/183 (17%)
Query: 57 GDLVIGVVTSRV-GDNYRVDI-GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT-- 112
GD VIGVV + D YRV+I GSH A+L L+FEGATK+N P++++G ++ ++
Sbjct: 237 GDRVIGVVEGKASADYYRVNIFGSHS-ALLHVLSFEGATKRNRPQLDSGALLYCRITKGF 295
Query: 113 ANKDMESEMVC-----------------VDSRG---------KEFIMGILNDGYLLHTSI 146
M+SE+ C D G E G L+ G S+
Sbjct: 296 GGGRMDSEVSCKVGGSGNDTGKATYNEGADEDGGASAKDWMTNEGTYGALSGGTSFRVSL 355
Query: 147 SLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSY 206
L R+LL P L L K S E+++G+NG +W+ T+ + N I + E+++
Sbjct: 356 GLARELLLPNNACLSALDK-SGIPFEIAVGVNGMVWVNSSEPEITITILNAIKNSEVMND 414
Query: 207 EEI 209
E+I
Sbjct: 415 EQI 417
>gi|302497443|ref|XP_003010722.1| hypothetical protein ARB_03424 [Arthroderma benhamiae CBS 112371]
gi|291174265|gb|EFE30082.1| hypothetical protein ARB_03424 [Arthroderma benhamiae CBS 112371]
Length = 271
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 39/227 (17%)
Query: 1 MAGDTLSLNAEPRLILGPGLR-------------RESSAILVSQSGIL-----RHAKPFT 42
+ GD L L+ LGP L S I SQ+G+L R+A T
Sbjct: 6 LPGDILQLSQPNAPKLGPNLHLLTSQAKAQESQEPTSQIIAASQAGLLASDNKRNAT--T 63
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVE 101
+ + RY+P + DL+I + D + I + P A L LAFEGATKK P+++
Sbjct: 64 SILPFPSTRYIPCQNDLIIAQIHHSSPDFFHCIISPNSPHAFLGQLAFEGATKKTRPQLK 123
Query: 102 TGDVVAGKLLT--ANKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLL--- 153
G++V ++L+ E E+ CV+ + + +G LN G + S +L+
Sbjct: 124 AGELVYARILSVGVGAGGEVELTCVNPATGKAEPDGLGPLNGGMMFDVSTLFASRLMMTG 183
Query: 154 ----NPKCP----LLKQLAKR--SRQKMELSIGMNGKIWIRCESFSD 190
+ P +L++L ++ S E+++G NGK+W+ + D
Sbjct: 184 PERKDGAGPGGVIVLEELGRKFESYGGFEIAVGRNGKVWVDSSAEGD 230
>gi|340519569|gb|EGR49807.1| predicted protein [Trichoderma reesei QM6a]
Length = 232
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 22/198 (11%)
Query: 14 LILGPGLRRESSAILVS--QSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
L LGPGLR + LV ++ + V+ RY+P G+LVIG V +
Sbjct: 27 LRLGPGLRHVPPSDLVPTLAGQLVTDRQKNAIRVETANGRYIPRVGELVIGTVNKSAQEV 86
Query: 72 YRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
Y V + + PA+L L+FE ATKK P + G +V + ++A S GK
Sbjct: 87 YFVSLSDYTAPALLPQLSFESATKKTRPILLPGALVYARCVSA------------STGKA 134
Query: 131 FIMGILNDGYLLHTSISLCRKLLNPKCP------LLKQLAKRSRQKMELSIGMNGKIWIR 184
+G L G L S+ + R L+ PK +L +LA Q E + G NG++W+
Sbjct: 135 DGLGPLVGGMLFTISLGMSRLLMMPKKAQQGRLVVLDELADAGVQ-FETATGRNGRLWVD 193
Query: 185 CESFSDTVRVGNLIMSCE 202
+S + VG I +
Sbjct: 194 SDSTKAIIAVGRAIQETD 211
>gi|242785618|ref|XP_002480632.1| exosome complex exonuclease Rrp40, putative [Talaromyces stipitatus
ATCC 10500]
gi|218720779|gb|EED20198.1| exosome complex exonuclease Rrp40, putative [Talaromyces stipitatus
ATCC 10500]
Length = 998
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 20/187 (10%)
Query: 24 SSAILVSQSGILR--HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP 81
S I +Q+GI+ H + + RRY+PT DL+I V D + + H P
Sbjct: 52 SHIIQSTQAGIISIDHNRKSVSVQPFPNRRYIPTVNDLIIAQVQRSSQDFFHCIVTPHAP 111
Query: 82 -AVLSYLAFEGATKKNPPKVETGDVVAGKLLT--ANKDMESEMVCVD---SRGKEFIMGI 135
AVL LAFEGA+KK P ++ GD+V ++L+ E E+ CV+ + + +G+
Sbjct: 112 LAVLGQLAFEGASKKTRPNLKQGDLVYARVLSVGVGAGTEVELTCVNPATGKAEPGGLGL 171
Query: 136 LNDGYLLHTSISLCRKLLN----------PKCPLLKQLAKR--SRQKMELSIGMNGKIWI 183
L+ G + S L +L+ + ++L K+ S+ E+++G NGK+W+
Sbjct: 172 LSGGMVFDVSTGLAARLMKASSSSSSAEAASVVIPEELGKKFESKGGFEIAVGRNGKVWV 231
Query: 184 RCESFSD 190
C D
Sbjct: 232 DCSGSGD 238
>gi|302661922|ref|XP_003022622.1| hypothetical protein TRV_03279 [Trichophyton verrucosum HKI 0517]
gi|291186578|gb|EFE42004.1| hypothetical protein TRV_03279 [Trichophyton verrucosum HKI 0517]
Length = 271
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 39/227 (17%)
Query: 1 MAGDTLSLNAEPRLILGPGLR-------------RESSAILVSQSGIL-----RHAKPFT 42
+ GD L L+ LGP L S I SQ+G+L R+A T
Sbjct: 6 LPGDILQLSQPNAPKLGPNLHLLTSQAKAQEPQEPTSQIIAASQAGLLASDNKRNAT--T 63
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVE 101
+ + RY+P + DL+I + D + I + P A L LAFEGATKK P+++
Sbjct: 64 SILPFPSTRYIPCQNDLIIAQIHHSSPDFFHCIISPNSPHAFLGQLAFEGATKKTRPQLK 123
Query: 102 TGDVVAGKLLT--ANKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLL--- 153
G++V ++L+ E E+ CV+ + + +G LN G + S +L+
Sbjct: 124 AGELVYARILSVGVGAGGEVELTCVNPATGKAEPDGLGPLNGGMVFDVSTLFASRLMMTG 183
Query: 154 ----NPKCP----LLKQLAKR--SRQKMELSIGMNGKIWIRCESFSD 190
+ P +L++L ++ S E+++G NGK+W+ + D
Sbjct: 184 PERKDGAGPGGVIVLEELGRKFESYGGFEIAVGRNGKVWVDSSAEGD 230
>gi|224033863|gb|ACN36007.1| unknown [Zea mays]
Length = 104
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 117 MESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKMELSI 175
M E+ C+D+ GK G L DGY+ TS + R LL +P CP+L+ L K + E+++
Sbjct: 1 MNPELSCMDATGKAAEFGQLKDGYMFDTSTGMSRMLLSSPTCPVLEVLGK--KLSFEIAV 58
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
G+NG++W+ + S + V N IM E LS
Sbjct: 59 GLNGRVWVNAPAASTVILVSNAIMRSESLS 88
>gi|67536894|ref|XP_662221.1| hypothetical protein AN4617.2 [Aspergillus nidulans FGSC A4]
gi|40741229|gb|EAA60419.1| hypothetical protein AN4617.2 [Aspergillus nidulans FGSC A4]
gi|259482550|tpe|CBF77139.1| TPA: exosome complex exonuclease Rrp40, putative (AFU_orthologue;
AFUA_2G02340) [Aspergillus nidulans FGSC A4]
Length = 273
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 23/207 (11%)
Query: 18 PGLRRESSAILVSQSGILR--HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
PG S + +Q+G+L + + + RRYVPT DLVI V D +
Sbjct: 38 PGTTPSSHVLTATQAGVLSTDNKRNAVSILSSSNRRYVPTTNDLVIAQVHHSSADYFHCM 97
Query: 76 IGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTA--NKDMESEMVCVD---SRGK 129
I P A+L L+FEGATKK P ++ GD+V ++L+ E E+ CV+ + +
Sbjct: 98 ITPQSPHALLGQLSFEGATKKTRPMLKGGDLVYARVLSTGLGPGAEVELTCVNPATGKAE 157
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCP------------LLKQLAKRSRQ--KMELSI 175
+G L G + S + +L+ +L +L K+ + E+++
Sbjct: 158 PGGLGPLTGGMVFDISTGMAARLIKASSSSSDQQEGVAGLVVLDELGKKLEKVGGFEIAV 217
Query: 176 GMNGKIWIRC-ESFSDTVRVGNLIMSC 201
G NGK+W+ C S D ++ I C
Sbjct: 218 GRNGKVWVDCSNSEEDAIKATVAIGRC 244
>gi|119498085|ref|XP_001265800.1| exosome complex exonuclease Rrp40, putative [Neosartorya fischeri
NRRL 181]
gi|119413964|gb|EAW23903.1| exosome complex exonuclease Rrp40, putative [Neosartorya fischeri
NRRL 181]
Length = 274
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 18 PGLRRESSA--ILVSQSGILR--HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
P + SS I +Q+G+L H K + + RRY+PT DLVI V + +
Sbjct: 37 PAIPSPSSGHVIASTQAGLLSTDHKKNAVSVLSFPNRRYIPTPNDLVIAQVHHSSAEYFY 96
Query: 74 VDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTA--NKDMESEMVCVD---SR 127
I P A+L LAFEGATKK P + GD+V ++L+ E E+ CV+ +
Sbjct: 97 CMITPQSPHALLGQLAFEGATKKTRPMLRQGDLVYARVLSIGLGAGAEVELTCVNPATGK 156
Query: 128 GKEFIMGILNDGYLLHTSISLCRKLLNPKCP------------LLKQLAKRSRQ--KMEL 173
+ +G LN G + S + +L+ +L++L K+ + E+
Sbjct: 157 AEPGGLGPLNGGMVFDVSTGMAARLMRASSSTSEQEDGVDGLVVLEELGKKLEKVGGFEI 216
Query: 174 SIGMNGKIWIRCESFSD-----TVRVGNLIMSCE 202
++G NGK+W+ C + D TV +G + + +
Sbjct: 217 AVGRNGKVWVDCSNGGDAAVKATVAIGRCLTTID 250
>gi|119194947|ref|XP_001248077.1| hypothetical protein CIMG_01848 [Coccidioides immitis RS]
gi|392862680|gb|EAS36662.2| exosome complex exonuclease Rrp40 [Coccidioides immitis RS]
Length = 261
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 12/149 (8%)
Query: 47 YIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDV 105
+ +RRY+P DLVI + D + + H P V L LAFEGAT+K P++++G++
Sbjct: 65 FPRRRYIPQPSDLVIAQIHHSSADYFHCTLSPHTPHVFLPQLAFEGATRKTRPQLKSGEL 124
Query: 106 VAGKLLTA--NKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP-- 158
V ++L+ E E+ CV+ + + +G LN G + S+ L +L++P
Sbjct: 125 VYARVLSVGLGPGAEIELTCVNPATGKAEPGGLGPLNGGMVFDVSVGLAGRLMSPGGSGG 184
Query: 159 --LLKQLAKR--SRQKMELSIGMNGKIWI 183
+L++L K+ S E+++G NG++W+
Sbjct: 185 VVVLEELGKKLESLGGFEIAVGKNGRVWV 213
>gi|320034693|gb|EFW16636.1| exosome complex exonuclease Rrp40 [Coccidioides posadasii str.
Silveira]
Length = 261
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 12/149 (8%)
Query: 47 YIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDV 105
+ +RRY+P DLVI + D + + H P V L LAFEGAT+K P++++G++
Sbjct: 65 FPRRRYIPQPSDLVIAQIHHSSADYFHCTLSPHTPHVFLPQLAFEGATRKTRPQLKSGEL 124
Query: 106 VAGKLLTA--NKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP-- 158
V ++L+ E E+ CV+ + + +G LN G + S+ L +L++P
Sbjct: 125 VYARVLSVGLGPGAEIELTCVNPATGKAEPGGLGPLNGGMVFDVSVGLAGRLMSPGGSGG 184
Query: 159 --LLKQLAKR--SRQKMELSIGMNGKIWI 183
+L++L K+ S E+++G NG++W+
Sbjct: 185 VVVLEELGKKLESLGGFEIAVGKNGRVWV 213
>gi|297598089|ref|NP_001045055.2| Os01g0891400 [Oryza sativa Japonica Group]
gi|255673946|dbj|BAF06969.2| Os01g0891400 [Oryza sativa Japonica Group]
Length = 144
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 21/118 (17%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR++ I + +G LR +KP Y+V+ Q+R N+ VD
Sbjct: 35 LGAGLRQDCDTIQATSAGRLRLSKPNKYWVESSQKR-------------------NFLVD 75
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIM 133
I + A L LAFEG T++N PK E G ++ +++ AN M E+ C+D GK I+
Sbjct: 76 IKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMD--GKTIIL 131
>gi|258566191|ref|XP_002583840.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907541|gb|EEP81942.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 266
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 27 ILVSQSGIL--RHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV- 83
I +Q+G+L H + + + RRY+P DLVI V D + + H P V
Sbjct: 43 ITSTQTGLLLPDHKRNSLAILPFPHRRYIPQANDLVIAQVQRSSADYFYCTLSPHTPHVS 102
Query: 84 LSYLAFEGATKKNPPKVETGDVVAGKLLT--ANKDMESEMVCVD---SRGKEFIMGILND 138
L+ LAFEGAT+K P+++ G++V ++L+ E E+ CV+ + + +G L
Sbjct: 103 LAQLAFEGATRKTRPQLKNGELVYARVLSVGVGPGAEIELTCVNPATGKAEPGGLGPLTG 162
Query: 139 GYLLHTSISLCRKLL----NPKCPLLKQLAKR--SRQKMELSIGMNGKIWI 183
G + S+ L +L+ + +L++L K+ S+ E+++G NG++W+
Sbjct: 163 GMVFDVSVGLTGRLMSSGGSGGVVVLEELGKKLESQGGFEIAVGKNGRVWV 213
>gi|327308640|ref|XP_003239011.1| exosome complex exonuclease Rrp40 [Trichophyton rubrum CBS 118892]
gi|326459267|gb|EGD84720.1| exosome complex exonuclease Rrp40 [Trichophyton rubrum CBS 118892]
Length = 271
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 39/227 (17%)
Query: 1 MAGDTLSLNAEPRLILGPGLR-------------RESSAILVSQSGIL-----RHAKPFT 42
+ GD L L+ LGP L S I SQ+G+L R+A T
Sbjct: 6 LPGDILQLSQPNAPKLGPNLHLLTSQAKAQESQEPTSQIIAASQAGLLSSDNKRNAT--T 63
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVE 101
+ + RY+P + DL+I + D + I + P A L LAFEGATKK P+++
Sbjct: 64 SILPFPSTRYIPCQNDLIIAQIHHSSPDFFHCIISPNSPHAFLGQLAFEGATKKTRPQLK 123
Query: 102 TGDVVAGKLLT--ANKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLL--- 153
G++V ++L+ E E+ CV+ + + +G L+ G + S +L+
Sbjct: 124 AGELVYARILSVGVGAGGEVELTCVNPATGKAEPDGLGSLHGGMVFDVSTLFASRLMMTG 183
Query: 154 ----NPKCP----LLKQLAKR--SRQKMELSIGMNGKIWIRCESFSD 190
+ P +L++L ++ S E+++G NGK+W+ + D
Sbjct: 184 PERKDGAGPGGVIVLEELGRKFESYGGFEIAVGRNGKVWVDSSAEGD 230
>gi|124512882|ref|XP_001349797.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23615214|emb|CAD52204.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 245
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 16/165 (9%)
Query: 32 SGILRHA--KPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-A 88
SGIL P+ Y + +Y+P GDLVIG+V S+ D Y++DI + ++ + +
Sbjct: 45 SGILLKTPYYPYKYDIMNTSYKYIPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIDS 104
Query: 89 FEGATKKNPPKVETGDVVAGKLLTANKDMESEMV---CVDSR------GKEFIMGILNDG 139
F+ ATK + P + G ++ ++ ++E+ V C++S E +G L DG
Sbjct: 105 FKYATKSSFPNLLNGTLLY--MVVEKMNLENNSVVTSCINSSDVKSWINYENYLGELVDG 162
Query: 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
++ +I+ + L+ +C +L + + K E+++G NG+IWI+
Sbjct: 163 FVFSVNIASAKSLIGDRCYILDLIGQDI--KYEIAVGHNGRIWIK 205
>gi|123497178|ref|XP_001327124.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121910049|gb|EAY14901.1| hypothetical protein TVAG_380110 [Trichomonas vaginalis G3]
Length = 178
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Query: 42 TYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVE 101
T + + Y T GD+VIG+V + GD++ VDIGS A L +AF G TK+ PK +
Sbjct: 4 TKVIGHTNSFYKATAGDIVIGIVDRKNGDDWLVDIGSSHNAYLPGMAFAGVTKQTAPKFD 63
Query: 102 TGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD+V + + E + C+ R + +G L G +L + KLL+ + K
Sbjct: 64 KGDLVVAWVEQVPEAGEVLLSCL-PRTQNEKLGRLTGGTVLRLRQN-DMKLLD-EIEFDK 120
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCES 187
+A +S K+ ++ GMNG+ W E+
Sbjct: 121 LVAAKS--KLNVAPGMNGRYWFETEN 144
>gi|255070405|ref|XP_002507284.1| predicted protein [Micromonas sp. RCC299]
gi|226522559|gb|ACO68542.1| predicted protein [Micromonas sp. RCC299]
Length = 235
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 1/186 (0%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
+G +R ++ + SG L+ F+ V+ RY P GD V+G + D + +
Sbjct: 36 IGERIRHHDCYLISTISGTLKDRDGFSLSVEGPTHRYCPASGDSVLGCIIDIHADGFSMS 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
GS A L + F TK++ PK++ G +V ++ N E + CV+ +G+
Sbjct: 96 TGSSSLAALPRVQFSVGTKQSRPKLKIGALVHARVQGVNHLGEVALTCVEEMHDVRGLGV 155
Query: 136 LNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVG 195
L +G+ + R + + + + S E++ G NG++WI + + +
Sbjct: 156 LTEGFFPRCNSKFARNMQSRSFETVLGILG-SAVSFEIATGHNGRVWIATSTRQQAILIV 214
Query: 196 NLIMSC 201
+ C
Sbjct: 215 KALSGC 220
>gi|295660050|ref|XP_002790582.1| exosome complex exonuclease RRP40 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226281457|gb|EEH37023.1| exosome complex exonuclease RRP40 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 279
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 18 PGLRRESSAILVSQSG-ILRHAKPFTYYVD-YIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
P +S I+ +Q+G I AK T + + QRRY+P+ DL+I + D +
Sbjct: 40 PANNPSTSIIIPTQAGLITSDAKRNTLTLHTFPQRRYIPSPNDLIIAQIHHTSADYFHCT 99
Query: 76 IGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLT---ANKDMESEMVCVD---SRG 128
I H P A L+ LAFEGAT+K P ++ GD+V ++L+ N E E+ V+ +
Sbjct: 100 ITPHTPPAFLAQLAFEGATRKTRPFLKHGDLVYARVLSTGIGNAGGEVELTSVNPATGKA 159
Query: 129 KEFIMGILNDGYLLHTSISLCRKLL-------NPKCPLLKQLAKR--SRQKMELSIGMNG 179
+ +G L G + S L +L+ +L++L ++ E+++G NG
Sbjct: 160 EPGGLGQLMGGMVFEISTGLAERLMMRGGSEGGSGIVVLEELGRKLEGHGGFEVAVGRNG 219
Query: 180 KIWIRCES 187
++W+ C +
Sbjct: 220 RVWVDCPA 227
>gi|225560756|gb|EEH09037.1| exosome complex exonuclease RRP40 [Ajellomyces capsulatus G186AR]
Length = 279
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 5 TLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKP----FTYYVDYIQRRYVPTRGDLV 60
T L++ R + P + S+A++ + L P T + + QRRY+P+ D +
Sbjct: 28 TTKLSSGLRTLQTPSSNKNSTALITATQAGLLTTDPKRNVLTLHT-FPQRRYIPSPNDFL 86
Query: 61 IGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTA--NKDM 117
I + D + +I H P A+L LAFEGAT+K P ++ GD+V ++L+
Sbjct: 87 IAQIHHSSVDYFHCNITPHTPYALLGQLAFEGATRKTRPLLKHGDLVYARVLSTGLGNAG 146
Query: 118 ESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLL-------NPKCPLLKQLAKR- 166
E E+ CV+ + + +G L G + S L +L +L++L R
Sbjct: 147 EVELTCVNPATGKAEPGGLGPLAGGMVFDISTGLAERLSLRGGSEGVSGVMVLEELGSRL 206
Query: 167 -SRQKMELSIGMNGKIWIRC 185
S E+++G NGK+W+ C
Sbjct: 207 ESHGGFEIAVGRNGKVWVDC 226
>gi|403284821|ref|XP_003933753.1| PREDICTED: exosome complex component RRP40-like [Saimiri
boliviensis boliviensis]
Length = 102
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 117 MESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI 175
ME EMVC+DS G+ MG++ DG L ++ L R+LL P C +++++ K +
Sbjct: 1 MEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRQLLAPNCEIIQEVGKLY--PTCIVF 58
Query: 176 GMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 59 GMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 91
>gi|402465348|gb|EJW01211.1| hypothetical protein EDEG_04060 [Edhazardia aedis USNM 41457]
Length = 200
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
Y+++ ++P + D+VIG +T + D Y++++G L LAF T++N P+++
Sbjct: 50 YFINSKVNLFMPQKDDIVIGKITFKTADFYKIELGQSYTGFLPVLAFPNVTRRNKPELQV 109
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
D V +++ ++ ES + C + GK DG++ + + RKLL L
Sbjct: 110 DDYVISRIMHPSQ--ESVLYCDEGLGKI-------DGFVYNFPVWKIRKLL--VTQFLHD 158
Query: 163 LAKRSRQKMELSIGMNGKIWIRCES 187
L K K ++ G+NG+++I+ E
Sbjct: 159 LGKSY--KFQIGFGVNGRVFIKSED 181
>gi|403223440|dbj|BAM41571.1| uncharacterized protein TOT_030000834 [Theileria orientalis strain
Shintoku]
Length = 707
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
YVP GD VIG++T++ D Y V+I ++ +L F GATKK P++ GDVV ++
Sbjct: 536 YVPRVGDHVIGIITNKNNDYYTVNINDLYEGFLLCIDGFRGATKKIKPQLAQGDVVFCQI 595
Query: 111 LTANKDMESEMVC--VDS----RGKEFIMGILNDGY-----LLHTSISLCRKLLNPKCPL 159
L+ E+ C VD E G L G L H+ I LC + N L
Sbjct: 596 LSIYNYNLIELTCKNVDEIKSFSTNETYFGHLTKGMTIKIPLTHSKI-LCNDVDNYTLSL 654
Query: 160 LKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLI 198
LK K ++++G NGK+W+ C + T+++ I
Sbjct: 655 LKDY------KFQIAVGFNGKLWVNCGNNDLTLKICRFI 687
>gi|303310835|ref|XP_003065429.1| hypothetical protein CPC735_046540 [Coccidioides posadasii C735
delta SOWgp]
gi|240105091|gb|EER23284.1| hypothetical protein CPC735_046540 [Coccidioides posadasii C735
delta SOWgp]
Length = 341
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 82/151 (54%), Gaps = 12/151 (7%)
Query: 45 VDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETG 103
+ + +R Y+P DLVI + D + + H P V L LAFEGAT+K P++++G
Sbjct: 143 LTFPRRCYIPQPSDLVIAQIHHSSADYFHCTLSPHTPHVFLPQLAFEGATRKTRPQLKSG 202
Query: 104 DVVAGKLLTA--NKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP 158
++V ++L+ E E+ CV+ + + +G LN G + S+ L +L++P
Sbjct: 203 ELVYARVLSVGLGPGAEIELTCVNPATGKAEPGGLGPLNGGMVFDVSVGLAGRLMSPGGS 262
Query: 159 ----LLKQLAKR--SRQKMELSIGMNGKIWI 183
+L++L K+ S E+++G NG++W+
Sbjct: 263 GGVVVLEELGKKLESLGGFEIAVGKNGRVWV 293
>gi|154278204|ref|XP_001539920.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413505|gb|EDN08888.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 279
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 5 TLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKP----FTYYVDYIQRRYVPTRGDLV 60
T L++ R + P + S+A++ + L P T + + QRRY+P+ D +
Sbjct: 28 TTKLSSGLRTLQTPSSNKNSTALITATQAGLLTTDPKRNVLTLHT-FPQRRYIPSPNDFL 86
Query: 61 IGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTA--NKDM 117
I + D + +I H P A+L LAFEGAT+K P ++ GD+V ++L+
Sbjct: 87 IAQIHHSSVDYFHCNITPHTPYALLGQLAFEGATRKTRPLLKHGDLVYARVLSTGVGNAG 146
Query: 118 ESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLL-------NPKCPLLKQLAKR- 166
E E+ CV+ + + +G L G + S L +L +L++L R
Sbjct: 147 EVELTCVNPATGKAEPGGLGPLAGGMVFDISTGLAERLSLRGGSEGVSGVVVLEELGSRL 206
Query: 167 -SRQKMELSIGMNGKIWIRC 185
E+++G NGK+W+ C
Sbjct: 207 EGHGGFEIAVGRNGKVWVDC 226
>gi|70989039|ref|XP_749369.1| exosome complex exonuclease Rrp40 [Aspergillus fumigatus Af293]
gi|66847000|gb|EAL87331.1| exosome complex exonuclease Rrp40, putative [Aspergillus fumigatus
Af293]
gi|159128783|gb|EDP53897.1| exosome complex exonuclease Rrp40, putative [Aspergillus fumigatus
A1163]
Length = 274
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 29/214 (13%)
Query: 18 PGLRRESSA--ILVSQSGILR--HAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
P + SS I +Q+G+L + K + + RRY+PT DLVI V + +
Sbjct: 37 PAIPSPSSGHVIASTQAGLLSTDYKKNAVSVLSFPNRRYIPTPNDLVIAQVHHSSAEYFY 96
Query: 74 VDIGSHDPAVL-SYLAFEGATKKNPPKVETGDVVAGKLLTA--NKDMESEMVCVD---SR 127
I P VL LAFEGATKK P + GD+V ++L+ E E+ CV+ +
Sbjct: 97 CMITPQSPHVLLGQLAFEGATKKTRPMLRQGDLVYARVLSIGLGAGAEVELTCVNPATGK 156
Query: 128 GKEFIMGILNDGYLLHTSISLCRKLLNPKCP------------LLKQLAKRSRQ--KMEL 173
+ +G LN G + S + +L+ +L++L ++ + E+
Sbjct: 157 AEPGGLGPLNGGMVFDVSTGMAARLMRASSSTSEQEDGVDGLVVLEELGRKLEKVGGFEI 216
Query: 174 SIGMNGKIWIRCESFSD-----TVRVGNLIMSCE 202
++G NGK+W+ C + D TV +G + + +
Sbjct: 217 AVGRNGKVWVDCSNGGDAAVKATVAIGRCLTAID 250
>gi|240280702|gb|EER44206.1| exosome complex exonuclease Rrp40 [Ajellomyces capsulatus H143]
gi|325089044|gb|EGC42354.1| exosome complex exonuclease RRP40 [Ajellomyces capsulatus H88]
Length = 279
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 28/197 (14%)
Query: 16 LGPGLR--------RESSAILVSQSGILRHAKP----FTYYVDYIQRRYVPTRGDLVIGV 63
L PGLR + S+A++ + L P T + + QRRY+P+ D +I
Sbjct: 31 LSPGLRTLQTPSSNKNSTALITATQAGLLTTDPKRNVLTLHT-FPQRRYIPSPNDFLIAQ 89
Query: 64 VTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTA--NKDMESE 120
+ D + +I H P A+L LAFEGAT+K P ++ GD+V ++L+ E E
Sbjct: 90 IHHSSVDYFHCNITPHTPYALLGQLAFEGATRKTRPLLKHGDLVYARVLSTGVGNAGEVE 149
Query: 121 MVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLL-------NPKCPLLKQLAKR--SR 168
+ CV+ + + +G L G + S L +L +L++L R
Sbjct: 150 LTCVNPATGKAEPGGLGPLAGGMVFDISTGLAERLSLRGGSEGVSGVVVLEELGSRLEGH 209
Query: 169 QKMELSIGMNGKIWIRC 185
E+++G NGK+W+ C
Sbjct: 210 GGFEIAVGRNGKVWVDC 226
>gi|253745083|gb|EET01191.1| Exosome complex exonuclease, putative [Giardia intestinalis ATCC
50581]
Length = 227
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGK 109
R Y P GD V+GV+ +V D Y VDI + PA + AF GA++KNP ++ GD + +
Sbjct: 63 RLYTPYEGDSVVGVIMEKVIDGYIVDIRAALPAFIGATAFPGASRKNPVLLKPGDAIYAR 122
Query: 110 LLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQ 169
+ +A + ++ C G + + G +++ ++++ + + L K+LAK
Sbjct: 123 ISSAPLGAQPQLTCA-LDGHMALTTVSAHGRIVYGTLAMGTEAES----LFKKLAKLIPF 177
Query: 170 KMELSIGMNGKIWIRCESFSDTVRV 194
K G NG IW+ + D++ V
Sbjct: 178 KG--FAGPNGLIWVTGSTLYDSITV 200
>gi|357481441|ref|XP_003611006.1| Exosome complex component rrp40 [Medicago truncatula]
gi|355512341|gb|AES93964.1| Exosome complex component rrp40 [Medicago truncatula]
Length = 142
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 104 DVVAGKLL-----TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKC 157
D + G LL AN M E+ C D+ GK G L +GY+ S L R +L+ P C
Sbjct: 21 DYLVGALLYVRVAKANPGMNPELSCTDASGKAGEFGALKEGYMFECSTGLSRMVLSTPTC 80
Query: 158 PLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
P+L K + E+++G+NG++ + S S T+ + N +++ E LS
Sbjct: 81 PVLDTFGK--KLSFEIAVGLNGRVSVNASSPSTTIIIANALINSEALS 126
>gi|154331770|ref|XP_001561702.1| putative exosome complex exonuclease RRP40 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059022|emb|CAM41494.1| putative exosome complex exonuclease RRP40 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 300
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 55/190 (28%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYR-VDIGSHDPAVLSYLAFEGATKKNPPKVETGDVV-- 106
RRY P GD V+ ++ +V +Y IGS A + LAF+GATK N P++ GDVV
Sbjct: 67 RRYTPRAGDPVLAIIARKVSQHYYYCYIGSSALAYMDALAFDGATKVNRPRLVEGDVVYC 126
Query: 107 -------------------------AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYL 141
AG++ T+ E + D E + G L+ G +
Sbjct: 127 YVKPRAASSYVDGTPRSVASGVVDTAGEVETSCTAAEVGLPPKDWTSGEAVFGPLHGGRV 186
Query: 142 LHTSISLCRKLLNP------KCPLLKQLAKRS---------------------RQKMELS 174
LH ++ R+LL P K +Q + R+ R E++
Sbjct: 187 LHLPLAYVRRLLMPMGLSPGKASAQQQKSNRTEGEISGGEEVPASYLLQLLGRRVPFEVA 246
Query: 175 IGMNGKIWIR 184
+G+NG +W+R
Sbjct: 247 VGLNGLVWVR 256
>gi|82596019|ref|XP_726089.1| nuclease [Plasmodium yoelii yoelii 17XNL]
gi|23481349|gb|EAA17654.1| Putative nuclease [Plasmodium yoelii yoelii]
Length = 210
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 16/154 (10%)
Query: 40 PFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-AFEGATKKNPP 98
P+ Y + +Y+P GDLVIG+V S+ D Y++DI S+ ++ + +F+ A+K + P
Sbjct: 54 PYKYDIMNTSHKYIPKIGDLVIGIVKSKKLDYYQMDINSNCECIIHKIESFKYASKSSFP 113
Query: 99 KVETGDVVAGKLLTANKDMESEMV---CVDSR------GKEFIMGILNDGYLLHTSISLC 149
+ G ++ ++ ++++ MV C++S E +G L DG+L +IS
Sbjct: 114 NLLNGTLLY--MIIEKINLDNNMVVASCINSADVKSWINYENYLGELVDGFLFAVNISYA 171
Query: 150 RKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
+ L+ KC +L + K E++IG NG W+
Sbjct: 172 KSLIGDKCYILDLIGKDV--PYEIAIGHNG--WL 201
>gi|428671089|gb|EKX72008.1| conserved hypothetical protein [Babesia equi]
Length = 141
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 89 FEGATKKNPPKVETGDVVAGKLL--TANKDMESEMVCVDSRG------KEFIMGILNDGY 140
F GATK+N P++ GDV+ ++ +M +E+ C+D+ E G L DG
Sbjct: 6 FRGATKRNKPELNEGDVIFCQVTRHYPRYEMPTEVSCIDADSVKQWTTNECYFGQLMDGV 65
Query: 141 LLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLI 198
I+ L KC +LK+ A S+ K E+++G+NG++W++ + +T+ V I
Sbjct: 66 TFDVPITYAVSLSRDKCYILKKCA--SKLKFEIAVGLNGRVWVKGSNIQETLLVARFI 121
>gi|115386192|ref|XP_001209637.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190635|gb|EAU32335.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 277
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 20/164 (12%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVL-SYLAFEGATKKNPPKVETGDVVA 107
RRYVP DLVI + D + I P VL LAFEGATKK P + GD+V
Sbjct: 75 NRRYVPIANDLVIAQIHHSSPDYFHCMITPQAPQVLLGQLAFEGATKKTRPMLRQGDLVY 134
Query: 108 GKLLTA--NKDMESEMVCVD---SRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP---- 158
++L+ E E+ CV+ R + +G L G + S + +L+
Sbjct: 135 ARVLSTGLGAGAEVELTCVNPATGRAEPGGLGPLTGGMVFDISTGMAARLMRASSSSAEN 194
Query: 159 --------LLKQLAKRSRQ--KMELSIGMNGKIWIRCESFSDTV 192
+L +L K+ + E+++G NGK+W+ C + D+
Sbjct: 195 QEGVDGLVVLDELGKKLEKVGGFEIAVGRNGKVWVDCANGGDSA 238
>gi|449310622|gb|AGE92538.1| exosome complex exonuclease RRP40 [Leishmania braziliensis]
gi|449310646|gb|AGE92550.1| exosome complex exonuclease RRP40 [Leishmania braziliensis]
Length = 300
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 55/190 (28%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYR-VDIGSHDPAVLSYLAFEGATKKNPPKVETGDVV-- 106
RRY P GD V+ ++ +V +Y IGS A + LAF+GATK N P++ GDVV
Sbjct: 67 RRYTPRAGDPVLAIIARKVSQHYYYCYIGSSALAYMDALAFDGATKVNRPRLVEGDVVYC 126
Query: 107 -------------------------AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYL 141
AG++ T+ E + D E + G L+ G +
Sbjct: 127 YVKPRAASSYVDGTPRSVASGVVDTAGEVETSCTAAEVGLPPKDWTSGEAVFGPLHGGRV 186
Query: 142 LHTSISLCRKLLNP----KCPLLKQLAKRSRQKMELS----------------------- 174
LH ++ R+LL P Q KR+R + E+S
Sbjct: 187 LHLPLAYVRRLLMPMGLSPSKASAQQQKRNRTEGEISGGEEVPASYLLQLLGRRVPFEVA 246
Query: 175 IGMNGKIWIR 184
+G+NG +W+R
Sbjct: 247 VGLNGLVWVR 256
>gi|308161450|gb|EFO63896.1| Exosome complex exonuclease, putative [Giardia lamblia P15]
Length = 227
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVA 107
R Y P GD ++GV+ R D Y VDI + PA + AF GA++KNP ++ GD +
Sbjct: 61 FARLYTPYEGDSIVGVIIERAIDGYLVDIRAALPAFIGATAFLGASRKNPVLLKAGDAIY 120
Query: 108 GKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRS 167
++ +A + ++ C G + + G +++ ++++ + L K+LAK
Sbjct: 121 ARISSAPFGAQPQLTCA-LDGHAALTTVSTHGRVVYGTLAMGVE----AGLLFKKLAKLI 175
Query: 168 RQKMELSIGMNGKIWIRCESFSDTVRV 194
K G NG +W+ + D++ V
Sbjct: 176 PFKG--FAGPNGLLWVTGSTLYDSITV 200
>gi|71661940|ref|XP_817984.1| ribosomal RNA processing protein 40 [Trypanosoma cruzi strain CL
Brener]
gi|70883208|gb|EAN96133.1| ribosomal RNA processing protein 40, putative [Trypanosoma cruzi]
Length = 300
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 27/163 (16%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVV--- 106
RRY+ + D V+ +V + Y G+ AVL L F+GATK + P+++ GDVV
Sbjct: 98 RRYMYSPRDPVVAIVVRKTSSYYYCYTGAAMLAVLDVLGFDGATKSSRPRLQEGDVVYAF 157
Query: 107 -----------AGKLLTANKDMESEMVCV---------DSRGKEFIMGILNDGYLLHTSI 146
+G + E E+ C+ D E + G L DG ++ I
Sbjct: 158 VKPKPSGAQPASGDACVESAGDEVELSCMAGDVGLVAKDWTSAEAVFGPLTDGTVVRVPI 217
Query: 147 SLCRKLL--NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
S R LL + LL L + R E+ +G+NG +W+R ++
Sbjct: 218 SYARSLLASDGASRLLSLLGE--RVPFEVCVGVNGFVWVRGQT 258
>gi|340056120|emb|CCC50449.1| putative exosome complex exonuclease RRP40 [Trypanosoma vivax Y486]
Length = 340
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVA-- 107
RRY G+ ++ +VT + + Y G+ AVL LAF+GATK + P+++ GDVV
Sbjct: 136 RRYTYATGEPIVAIVTKKNANYYTCYTGASSTAVLDALAFDGATKTSRPRLQEGDVVYAF 195
Query: 108 ---------------GKLLTANKDMESEMVCV---------DSRGKEFIMGILNDGYLLH 143
G + E E+ C+ D E I G L G ++
Sbjct: 196 VKACGCADPSNPSDLGVHAIPSTADEVELSCMAGEVGLQTRDWTSTEAIFGPLLGGTVIR 255
Query: 144 TSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIWIR---CES-FSDTVRVGNLI 198
++ R L++ P LL + +R ++ +G+NG +W+R C++ + VR +
Sbjct: 256 VTLPYARSLISGPASQLLAYIGERV--PYDVCVGVNGLVWVRGQPCKADPTAEVRRTVAV 313
Query: 199 MSCELLSYEE 208
SC + S E+
Sbjct: 314 ASCIVESQED 323
>gi|407844244|gb|EKG01870.1| ribosomal RNA processing protein 40, putative,exosome complex
exonuclease, putative [Trypanosoma cruzi]
Length = 300
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 27/163 (16%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVV--- 106
RRY+ + D V+ +V + Y G+ AVL L F+GATK + P+++ GDVV
Sbjct: 98 RRYLYSPRDPVVAIVVRKTSSYYYCYTGAAMLAVLDVLGFDGATKSSRPRLQEGDVVYAF 157
Query: 107 -----------AGKLLTANKDMESEMVCV---------DSRGKEFIMGILNDGYLLHTSI 146
+G + E E+ C+ D E + G L DG ++ I
Sbjct: 158 VKPKPSGAQPASGDACVESAGDEVELSCMAGDVGLVAKDWTSTESVFGPLTDGTVVRVPI 217
Query: 147 SLCRKLL--NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
S R LL + LL L + R E+ +G+NG +W+R ++
Sbjct: 218 SYARSLLASDGASRLLSLLGE--RVPFEVCVGVNGFLWVRGQT 258
>gi|261331311|emb|CBH14301.1| exosome complex exonuclease RRP40, putative [Trypanosoma brucei
gambiense DAL972]
Length = 304
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 37/197 (18%)
Query: 22 RESSAILVSQ--SGILRHAKPFTYYVDYIQ----RRYVPTRGDLVIGVVTSRVGDNYRVD 75
E S ++VS+ +LR A P + + RRY+ D V+ +V + Y
Sbjct: 66 EEGSTVVVSEFCGPVLRTAGPNHTQLYKLNGPAARRYMYAARDPVVAIVMKKNASYYSCY 125
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVV------------------AGKLLTANKDM 117
G+ AVL L F+GATK N P+++ GDVV G+++ ++ D
Sbjct: 126 TGAASLAVLDALGFDGATKTNKPRLQEGDVVYAFVKGNADASSLDTKFDDGRVVVSSSD- 184
Query: 118 ESEMVCV---------DSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRS 167
E E+ C+ D E + G L G ++ ++ R L++ P LL L
Sbjct: 185 EVELSCMAAEVGLVARDWTSAEAVFGPLVGGTVVRVALPYARSLIDGPASRLLALLGD-- 242
Query: 168 RQKMELSIGMNGKIWIR 184
R ++ +G+NG +W+R
Sbjct: 243 RVPYDVCVGVNGLVWVR 259
>gi|71744870|ref|XP_827065.1| exosome complex exonuclease RRP40 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|14250904|emb|CAC39257.1| Rrp40p homologue [Trypanosoma brucei]
gi|70831230|gb|EAN76735.1| exosome complex exonuclease RRP40 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 304
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 37/197 (18%)
Query: 22 RESSAILVSQ--SGILRHAKPFTYYVDYIQ----RRYVPTRGDLVIGVVTSRVGDNYRVD 75
E S ++VS+ +LR A P + + RRY+ D V+ +V + Y
Sbjct: 66 EEGSTVVVSEFCGPVLRTAGPNHTQLYKLNGPAARRYMYAARDPVVAIVMKKNASYYSCY 125
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVV------------------AGKLLTANKDM 117
G+ AVL L F+GATK N P+++ GDVV G+++ ++ D
Sbjct: 126 TGAASLAVLDALGFDGATKTNKPRLQEGDVVYAFVKGNADASSLDTKFDDGRVVVSSSD- 184
Query: 118 ESEMVCV---------DSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRS 167
E E+ C+ D E + G L G ++ ++ R L++ P LL L
Sbjct: 185 EVELSCMAAEVGLVARDWTSAEAVFGPLVGGTVVRVALPYARSLIDGPASRLLALLGD-- 242
Query: 168 RQKMELSIGMNGKIWIR 184
R ++ +G+NG +W+R
Sbjct: 243 RVPYDVCVGVNGLVWVR 259
>gi|323509221|dbj|BAJ77503.1| cgd3_780 [Cryptosporidium parvum]
Length = 262
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 47/188 (25%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
Y+P +GD+V+G + +++G+ Y+V + +L +AFEGATK+N P + G+ V ++
Sbjct: 55 YIPRKGDVVVGTIINKLGEFYKVSLNCSHDGILPDMAFEGATKRNKPNLVPGNYVCSRIN 114
Query: 112 TANKDMES---EMVCVDSRGK------EFIMGILNDGYLLHTSI---------------- 146
D+ES E+ C+ K E +G+L + +T+I
Sbjct: 115 YV--DLESGEIELTCITPEEKKTWSNNENYLGVLKNSNYKNTNIIEDYSKSDRSSLPGES 172
Query: 147 --------------SLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
S+ + LL + +L+ L+K E+ +G NG IW + + +
Sbjct: 173 QSCIKDGMTVTVPQSVAQILLADQSYVLEALSKYF--AYEICVGQNGIIWFSASNIKEML 230
Query: 193 RVGNLIMS 200
LIMS
Sbjct: 231 ----LIMS 234
>gi|402575929|gb|EJW69889.1| hypothetical protein WUBG_19201 [Wuchereria bancrofti]
Length = 65
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEG 91
RRY+P +GD VIG+VTS G+ +++DIGS D A +S+L+FEG
Sbjct: 6 RRYIPQKGDRVIGIVTSTHGETFKIDIGSADIAFISFLSFEG 47
>gi|407404653|gb|EKF30025.1| DNA ligase I, putative [Trypanosoma cruzi marinkellei]
Length = 344
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAG- 108
RRY+ + D V+ +V + Y G+ AVL L+F+GATK + P+++ GDVV
Sbjct: 142 RRYMYSPRDPVVAIVVRKTSSYYYCYTGAAMLAVLDALSFDGATKSSRPRLQEGDVVYAF 201
Query: 109 -KLLTANKDMESEMVCVDSRGKEF---------------------IMGILNDGYLLHTSI 146
K ++ S CV+S G E + G L G ++ I
Sbjct: 202 VKPKPSSVQPASSDACVESAGDEVELSCMAGDVGLVAKDWTSAEAVFGPLTGGTVVRVPI 261
Query: 147 SLCRKLL---NPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
R LL C LL L +R E+ +G+NG +W+R
Sbjct: 262 PYARSLLASDGASC-LLSLLGERV--PFEVCVGVNGFVWVR 299
>gi|159111079|ref|XP_001705772.1| Exosome complex exonuclease, putative [Giardia lamblia ATCC 50803]
gi|157433861|gb|EDO78098.1| Exosome complex exonuclease, putative [Giardia lamblia ATCC 50803]
Length = 279
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVA 107
R Y P GD ++GVV R D Y VDI + PA + AF GA++KNP ++ GD +
Sbjct: 113 FARLYTPYEGDSIVGVVIERAIDGYLVDIRAALPAFIGATAFIGASRKNPVLLKPGDAIY 172
Query: 108 GKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRS 167
++ +A + ++ C G + + G +++ ++++ + L K+LA+
Sbjct: 173 ARVSSAPLGAQPQLTCALD-GHMALNTVSAHGRVVYGTLAMGAE----AGLLFKKLARLI 227
Query: 168 RQKMELSIGMNGKIWIRCESFSDTV 192
K G NG +W+ + D++
Sbjct: 228 PFKG--FAGPNGLLWVTGSTLYDSI 250
>gi|12843792|dbj|BAB26116.1| unnamed protein product [Mus musculus]
Length = 82
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 137 NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGN 196
DG L ++ L RKLL P C ++++L K +E+ GMNG+IW++ ++ T+ + N
Sbjct: 2 QDGLLFKVTLGLIRKLLAPDCEIVQELGKLY--PLEIVFGMNGRIWVKAKTIQQTLILAN 59
Query: 197 LIMSCELLSYEE 208
++ +CE ++ E+
Sbjct: 60 VLEACEHMTTEQ 71
>gi|146076136|ref|XP_001462850.1| putative exosome complex exonuclease RRP40 [Leishmania infantum
JPCM5]
gi|134066931|emb|CAM65036.1| putative exosome complex exonuclease RRP40 [Leishmania infantum
JPCM5]
Length = 300
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 55/190 (28%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRV-DIGSHDPAVLSYLAFEGATKKNPPKVETGDVV-- 106
RRY+P GD V+ ++ +V +Y IG A + LAF+GATK + P++ GDVV
Sbjct: 67 RRYIPRAGDPVLAIIARKVSQHYYYCYIGGSALAYMDALAFDGATKVSRPRLVEGDVVYC 126
Query: 107 -----AGKLLTA-----------NKDMESEMVCV---------DSRGKEFIMGILNDGYL 141
AG + E E+ C D E G L G +
Sbjct: 127 YVKPRAGSSYVGGVHRSVASEVFDTTGEVEVSCTAAEVGLPPKDWTSGEAAFGPLQGGRV 186
Query: 142 LHTSISLCRKLLNPKCPLLKQLAKRSRQK---------------------------MELS 174
LH S++ R+L+ P + + + R+ E++
Sbjct: 187 LHLSLAYVRRLITPVGSSPDKASAQQRKHGHTEGEGGYGDEVPASYLLQLLGCRVPFEVA 246
Query: 175 IGMNGKIWIR 184
+G+NG +W+R
Sbjct: 247 VGLNGLVWVR 256
>gi|399215900|emb|CCF72588.1| unnamed protein product [Babesia microti strain RI]
Length = 204
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 13/174 (7%)
Query: 18 PGLRRESSAILVSQSGI-LRHA-KPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
P ++ + I Q GI LR PF Q+ Y P GD VI +VT++ D + +D
Sbjct: 33 PAVKHSITGIDSYQCGIHLRSPIYPFNTKKFTAQKFYTPKIGDHVIAIVTNKNSDYFTLD 92
Query: 76 IGSHDPAVLSYL-AFEGATKKNPPKVETGDVVAGKL--LTANKDMESEMVCVDSRGK--- 129
I A + + F A+++N P ++ D + ++ + ++ + +++ C+D
Sbjct: 93 INCGFRATIDAVDGFPMASRRNIPNLKEKDAIFCQVSHIYRSQALPTKVTCIDPSCNKSW 152
Query: 130 ---EFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK 180
E G L G ++ I +C L C LL L K E+++G+NG+
Sbjct: 153 TTFETYFGQLVGGMVIRMDIPICYSLAAKPCHLLSSLGNTC--KYEIAVGLNGR 204
>gi|398009755|ref|XP_003858076.1| exosome complex exonuclease RRP40, putative [Leishmania donovani]
gi|322496281|emb|CBZ31352.1| exosome complex exonuclease RRP40, putative [Leishmania donovani]
Length = 300
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 74/191 (38%), Gaps = 57/191 (29%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRV-DIGSHDPAVLSYLAFEGATKKNPPKVETGDVV-- 106
RRY+P GD V+ ++ +V +Y IG A + LAF+GATK + P++ GDVV
Sbjct: 67 RRYIPRAGDPVLAIIARKVSQHYYYCYIGGSALAYMDALAFDGATKVSRPRLVEGDVVYC 126
Query: 107 -----AGKLLTA-----------NKDMESEMVCV---------DSRGKEFIMGILNDGYL 141
AG + E E+ C D E G L G +
Sbjct: 127 YVKPRAGSSYVGGVHRSVASEVFDTTGEVEVSCTAAEVGLPPKDWTSGEAAFGPLQGGRV 186
Query: 142 LHTSISLCRKLLNP----------------------------KCPLLKQLAKRSRQKMEL 173
LH ++ R+L+ P L QL R R E+
Sbjct: 187 LHLPLAYVRRLITPVGSSPDKASAQQRKHGHTEGEGGYGDEVPASYLLQLLGR-RVPFEV 245
Query: 174 SIGMNGKIWIR 184
++G+NG +W+R
Sbjct: 246 AVGLNGLVWVR 256
>gi|401414568|ref|XP_003871781.1| putative exosome complex exonuclease RRP40 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488001|emb|CBZ23246.1| putative exosome complex exonuclease RRP40 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 332
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 74/191 (38%), Gaps = 57/191 (29%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRV-DIGSHDPAVLSYLAFEGATKKNPPKVETGDVV-- 106
RRY P GD V+ ++ +V +Y IG A + LAF+GATK + P++ GDVV
Sbjct: 99 RRYTPRAGDPVLAIIARKVSQHYYYCYIGGSALAYMDALAFDGATKVSRPRLVEGDVVYC 158
Query: 107 -----AGKLLTA-----------NKDMESEMVCV---------DSRGKEFIMGILNDGYL 141
AG + E E+ C D E + G L G +
Sbjct: 159 YVKPRAGSNYVEGVHRSVASGVFDTTGEVEVSCTAAEVGLPPKDWTSGEAVFGPLQGGRV 218
Query: 142 LHTSISLCRKLLNP----------------------------KCPLLKQLAKRSRQKMEL 173
LH ++ R+LL P L QL R R E+
Sbjct: 219 LHLPLAYVRRLLTPLGSSPDKASAQQRKRGHTEGEGGDGDEVPASYLLQLLGR-RVPFEV 277
Query: 174 SIGMNGKIWIR 184
++G+NG +W+R
Sbjct: 278 AVGLNGLVWVR 288
>gi|119872349|ref|YP_930356.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum islandicum
DSM 4184]
gi|119673757|gb|ABL88013.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum islandicum DSM
4184]
Length = 231
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET--------- 102
Y P +GDLV+G VT + + VD+ S PA YL A K+ +ET
Sbjct: 58 YRPKKGDLVVGYVTDVLATGWEVDVRSFMPA---YLPVSEALHKHV-DLETTPLTTFLNI 113
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
GDV+ K+ + D+ E + + KE +G + G ++ S +++ K +L
Sbjct: 114 GDVIVAKV--KDVDLTDEYPIILTL-KEEKVGKVERGTVIEISPVKVPRVIGKKGSMLNT 170
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
L + ++ +G NG+IWIRC D V + +L+ E S+ ++ L + I
Sbjct: 171 LMELG---CDIIVGQNGRIWIRCRDVKDEVFLASLVKKIEAESH--VMGLTDRI 219
>gi|76363623|ref|XP_888523.1| putative exosome complex exonuclease RRP40 [Leishmania major strain
Friedlin]
gi|11061593|emb|CAB97371.2| putative exosome complex exonuclease RRP40 [Leishmania major strain
Friedlin]
Length = 300
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 55/190 (28%)
Query: 50 RRYVPTRGDLVIGVVTSRVGDNYRV-DIGSHDPAVLSYLAFEGATKKNPPKVETGDVV-- 106
RRY P GD V+ ++ +V +Y IG A + LAF+GATK + P++ GDVV
Sbjct: 67 RRYTPRAGDPVLAIIARKVSQHYYYCYIGGSALAYMDALAFDGATKVSRPRLVEGDVVYC 126
Query: 107 ------------------AGKLLTANKDMESEMVCV-------DSRGKEFIMGILNDGYL 141
A ++ ++E D E + G L G +
Sbjct: 127 YVKPREGSSYVDGVHRSVASEVFDTTGEVEVSCTAAEVGLPPKDWTSGEAVFGPLQGGRV 186
Query: 142 LHTSISLCRKLLNPKCPLLKQLAKRSRQK---------------------------MELS 174
LH + R+LL P ++ + + R++ E++
Sbjct: 187 LHLPLVYVRRLLTPMGSSPEKASAQQRKRDHTEGEGSDGDEVPASYLLQLLGRRVPFEVA 246
Query: 175 IGMNGKIWIR 184
+G+NG +W+R
Sbjct: 247 VGLNGLVWVR 256
>gi|305663897|ref|YP_003860185.1| exosome complex RNA-binding protein Rrp4 [Ignisphaera aggregans DSM
17230]
gi|380876877|sp|E0SQX5.1|ECR1_IGNAA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|304378466|gb|ADM28305.1| exosome complex RNA-binding protein Rrp4 [Ignisphaera aggregans DSM
17230]
Length = 253
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLS---YL--AFEGATKKNPPKVETGDV 105
RY+P GD+VIG+V ++ +DI S +VL+ YL +F T +E GDV
Sbjct: 74 RYIPREGDIVIGIVVDVTLSSWIIDINSPYLSVLNASDYLGRSFNPLTDNIRKYLEIGDV 133
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
V GK+ T ++ ++ V +G +G + DG L+ +++ K +L L +
Sbjct: 134 VVGKIATFDRS-RGPILTVQDKG----LGKVVDGSLIEIEPIKVARVIGKKKSMLNMLIE 188
Query: 166 RSRQKMELSIGMNGKIWIRC 185
++ K ++ +G NG+I +RC
Sbjct: 189 QT--KCDILVGNNGRIILRC 206
>gi|119589382|gb|EAW68976.1| hCG1732751 [Homo sapiens]
Length = 93
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 138 DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNL 197
DG L ++ L RKLL P C +++++ K +E+ GMNG+IW++ ++ T+ + N+
Sbjct: 14 DGLLFKVTLGLVRKLLTPGCGIIQEVGKLY--SLEIVFGMNGRIWVKTKTIHQTLILANI 71
Query: 198 IMSCE 202
+ +CE
Sbjct: 72 LEACE 76
>gi|126459547|ref|YP_001055825.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum calidifontis
JCM 11548]
gi|126249268|gb|ABO08359.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum calidifontis JCM
11548]
Length = 235
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET--------- 102
Y P +GDLVIG VT + + VD+ + PA YL A K+ +ET
Sbjct: 58 YKPKKGDLVIGYVTDVLATGWEVDVRTFMPA---YLPVSEALHKHV-DLETTPLTTFLNI 113
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
GDV+ K+ + D+ E V + +E + G + G ++ + +++ K +L
Sbjct: 114 GDVIVAKV--KDVDLTDEYPVVLTLKEERV-GKVESGTVVEIAPVKVPRVVGKKGSMLAV 170
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSY 206
LA+ ++ +G NG+IW++C+S D V + +LI E S+
Sbjct: 171 LAEVG---CDIVVGQNGRIWVKCKSPRDEVFLTSLIKKIEAESH 211
>gi|429965456|gb|ELA47453.1| hypothetical protein VCUG_01104 [Vavraia culicis 'floridensis']
Length = 214
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
Y P + D+ IG D ++D G VL AF TK+N PK+ TGD + ++L
Sbjct: 68 YNPQQNDVAIGKAVGIHPDYIKLDFGHAVKGVLLAQAFLNCTKRNKPKINTGDFLLCRIL 127
Query: 112 TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
D+ C + +G+L G++ T L + L K +L + + + K+
Sbjct: 128 RVG-DVVFASCCEEG------LGVLEGGWIFETDALLVKTLFIKK-NILNDIGREYKYKI 179
Query: 172 ELSIGMNGKIWI 183
L G+NG +WI
Sbjct: 180 AL--GLNGMMWI 189
>gi|312088388|ref|XP_003145842.1| exosome complex exonuclease RRP40 [Loa loa]
Length = 153
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 120 EMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN 178
++ CVD G+ MG L + G+L TS++L R++L+P LL + K K E++ G+N
Sbjct: 38 KLTCVDGEGRARGMGPLPSGGFLFKTSLNLVRRILSPTSKLLSLIGKD--IKFEITSGIN 95
Query: 179 GKIWIRCESFSDTVRVGNLIMSCELLSYEEI 209
G+IWI+ + + + V +I E + +I
Sbjct: 96 GRIWIKGINVVEVIAVYRIIKDSEFIPEPDI 126
>gi|145544579|ref|XP_001457974.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425793|emb|CAK90577.1| unnamed protein product [Paramecium tetraurelia]
Length = 134
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 18/144 (12%)
Query: 87 LAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGK------EFIMGILNDGY 140
+ FEGATKKN ++ G ++ ++ N ++ ++ C++ + K E I G++ D
Sbjct: 1 MGFEGATKKNKSNIQVGQLLYARVTELNHYLKGKLSCINPQSKTKNLFRELIGGVIVD-- 58
Query: 141 LLHTSISLCRKLLNP--KCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLI 198
++ + LL+ K L K +++ S E+ +G NG++W++ D V + NL+
Sbjct: 59 ---LPLNFVQSLLSSQTKPELFKVISQHS--SFEICVGKNGRMWVKG---LDAVLIINLL 110
Query: 199 MSCELLSYEEILNLCESIHIRFLQ 222
C + ++ LNL +F Q
Sbjct: 111 KRCAPMQLDQQLNLINKFASQFQQ 134
>gi|296815072|ref|XP_002847873.1| exosome complex exonuclease RRP40 [Arthroderma otae CBS 113480]
gi|238840898|gb|EEQ30560.1| exosome complex exonuclease RRP40 [Arthroderma otae CBS 113480]
Length = 228
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 19/153 (12%)
Query: 58 DLVIGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLT--AN 114
DLVI + D + I + P A L L+FEGATKK P+++ G++V ++L+
Sbjct: 36 DLVIAQIHHSSQDFFHCIISLNSPHAFLGQLSFEGATKKTRPQLKPGELVYARILSVGVG 95
Query: 115 KDMESEMVCVDS---RGKEFIMGILNDGYLLHTSISLCRKLL-------NPKCP----LL 160
E E+ CV++ + + +G L G + S +L+ + P +L
Sbjct: 96 AGGEIELTCVNTATGKAEPDGLGPLTGGMVFDVSTLFASRLMMTGAERKDGAGPGGVIVL 155
Query: 161 KQLAKR--SRQKMELSIGMNGKIWIRCESFSDT 191
++L ++ S E+++G NGK+W+ + D
Sbjct: 156 EELGRKFESYGGFEVAVGRNGKVWVDSSADGDA 188
>gi|300122352|emb|CBK22924.2| unnamed protein product [Blastocystis hominis]
Length = 109
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 100 VETGDVVAGKLLTANKDMESEMVCVDSRG--KEFI-----MGILNDGYLLHTSISLCRKL 152
++ G +V ++L A M +++ C + G E++ G L DGY+ S++ R+L
Sbjct: 2 LKPGCLVYCRVLQALPGMAAQLTCTVANGPRSEWVNGASLFGELKDGYVFKISVTQARQL 61
Query: 153 LNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMS 200
L+P C +L+ + S+ E +IG+NG +W+ + + + N I++
Sbjct: 62 LDPGCDILQTIG--SQIPYECAIGLNGFVWVNSGDANKIITISNTILN 107
>gi|147919676|ref|YP_686580.1| exosome complex RNA-binding protein Rrp4 [Methanocella arvoryzae
MRE50]
gi|110621976|emb|CAJ37254.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 226
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAF-EGATKKNPPK-VETGDVVAG 108
RY+P RGDLVIG VT N+ VDI S +L + E + N K + G+++
Sbjct: 53 RYIPARGDLVIGKVTDVTFSNWIVDINSPYEGLLHASEYPERVDQNNMTKYLHEGELIIA 112
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSR 168
K+ + M+ E+ +E + IL DG ++ S +++ ++K L K
Sbjct: 113 KISDVDPSMKVELTL-----REEHLKILKDGRVIEISHVKIPRVIGRNGSMIKMLMK--D 165
Query: 169 QKMELSIGMNGKIWIRCES 187
+ +G NG+IW++ +
Sbjct: 166 LDCSIFVGQNGRIWLKGDD 184
>gi|145592133|ref|YP_001154135.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum arsenaticum
DSM 13514]
gi|379003149|ref|YP_005258821.1| RNA-binding protein Rrp4 and related proteins (containing S1 domain
and KH domain) [Pyrobaculum oguniense TE7]
gi|145283901|gb|ABP51483.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum arsenaticum DSM
13514]
gi|375158602|gb|AFA38214.1| RNA-binding protein Rrp4 and related proteins (containing S1 domain
and KH domain) [Pyrobaculum oguniense TE7]
Length = 232
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET--------- 102
Y P +GD+V+G VT + + VD+ S PA YL A K+ +ET
Sbjct: 58 YRPKKGDVVVGYVTDVLATGWEVDVRSFMPA---YLPVSEALHKHV-DLETTPLTTFLNV 113
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
GDV+ K+ + D+ E V + +E + G + G ++ + +++ K +L
Sbjct: 114 GDVIVAKV--KDVDLTDEYPIVLTLREEKV-GKVESGTVVDIAPVKIPRVIGKKGTMLNT 170
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSY 206
L + ++ +G NG+IWI+C D V + +LI EL S+
Sbjct: 171 LLELG---CDIVVGQNGRIWIKCGDPRDEVFLASLIRKIELESH 211
>gi|159040950|ref|YP_001540202.1| exosome complex RNA-binding protein Rrp4 [Caldivirga maquilingensis
IC-167]
gi|157919785|gb|ABW01212.1| KH type 1 domain protein [Caldivirga maquilingensis IC-167]
Length = 240
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 23 ESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPA 82
++ A V+ I KP V + Y P +GD+VIG V + + + +DI S A
Sbjct: 35 KAYASTVAMINIKGDVKPMEVQVIPLNGAYKPRQGDIVIGYVIDILVNGWEIDIKSPYSA 94
Query: 83 VLSYLAFEGATKKNPPKVET---------GDVVAGKLLTAN--KDMESEMVCVDSRGKEF 131
YL AT K P V T GD+V K+ N KD + +SR
Sbjct: 95 ---YLPINEATLK-PVDVVTADLRNILNIGDIVLAKISDFNLAKDYPVTLTIKESR---- 146
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
+G + DG ++ +++ + ++ + ++++G NG+IW+RC + D
Sbjct: 147 -LGRIEDGTVIEIDPVKVPRVIGKRGSMVNMF--KDELNCDVTVGQNGRIWVRCRNKRDE 203
Query: 192 VRVGNLIMSCELLSYE 207
+ V I E S++
Sbjct: 204 LFVSQTIKFIEKESHQ 219
>gi|374325949|ref|YP_005084149.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum sp. 1860]
gi|356641218|gb|AET31897.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum sp. 1860]
Length = 235
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET--------- 102
Y P +GD+V+G VT + + +D+ S PA YL A ++ +ET
Sbjct: 58 YKPKKGDVVVGYVTDVLATGWEIDVRSFMPA---YLPVSEALHRHV-DLETTPLTTFLNI 113
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
GDVV K+ + D+ E + + KE +G + G ++ + +L+ + +L
Sbjct: 114 GDVVIAKV--KDVDLTDEYPIILTL-KEERVGKVESGTVVEITPVKVPRLIGKRGSMLNT 170
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIH 217
L + ++ +G NG++WIRC D V + LI E S+ ++ L + I
Sbjct: 171 LMEVG---CDIIVGQNGRVWIRCRDTRDEVFLATLIKKIEAESH--VMGLTDRIR 220
>gi|300708351|ref|XP_002996356.1| hypothetical protein NCER_100548 [Nosema ceranae BRL01]
gi|239605652|gb|EEQ82685.1| hypothetical protein NCER_100548 [Nosema ceranae BRL01]
Length = 205
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 19 GLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGS 78
GL +E + I G L + + + RY P D+VIG V D Y++D+ +
Sbjct: 24 GLYKEDNKIKSYVYGTLCRVQNHLFVIS-KTSRYFPYIDDIVIGRVIYSCADYYKLDLDT 82
Query: 79 HDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILND 138
+ +L L+F A+K+N P ++ D + +++ + E + CV G+ F G L D
Sbjct: 83 Y-IGILPVLSFTNASKRNKPDIKKDDWLLCRIIESG--AEPILSCV---GEGF--GKL-D 133
Query: 139 GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVR-VGNL 197
GY+ + +C+ L L ++ K+ K +G+NG I I E+ TVR V
Sbjct: 134 GYVFKIKVWMCQMLYVD--DFLYKIGKKYNFK--CCVGINGYICITGEAI--TVRDVYTE 187
Query: 198 IMSCELLSYEEILNL 212
I+ C + I N+
Sbjct: 188 IIKCFKYCFLVIKNI 202
>gi|429216661|ref|YP_007174651.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Caldisphaera lagunensis DSM 15908]
gi|429133190|gb|AFZ70202.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Caldisphaera lagunensis DSM 15908]
Length = 230
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 75/142 (52%), Gaps = 13/142 (9%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATK-----KNPPK-VETGDV 105
Y+P GD+VIG+VTS N+ VDI S A+LS F G + ++P K ++ G+
Sbjct: 56 YIPKEGDIVIGLVTSHGVANWFVDINSPYQAILSVQDFFGTKQSSQFPEDPFKYLQVGEY 115
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
+ K+ ++ + + ++ V +G +G + +G ++ + +++ K +++ L
Sbjct: 116 IKAKIAAFDR-IRNPLLTVQDKG----LGKIAEGIVVSVHPTRVPRIIGKKGSMIEML-- 168
Query: 166 RSRQKMELSIGMNGKIWIRCES 187
++ E + +NG I I+C++
Sbjct: 169 KNETGCEFFVAVNGMINIKCQN 190
>gi|396082066|gb|AFN83678.1| S1-like RNA-binding domain-containing protein [Encephalitozoon
romaleae SJ-2008]
Length = 194
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 22/198 (11%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ GD +S N L G+ + I+ + RH +V RY P D+V
Sbjct: 9 LPGDEVSSNDSKSL----GIHENKAMIVGTLCRASRH-----LFVISKTNRYHPCIDDIV 59
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
IG D +R+D+G VL L+F ATK+N P++ GD + K+ A +E
Sbjct: 60 IGKAILTSQDIHRMDLGGM-VGVLPSLSFTNATKRNKPEISKGDYLLCKI--ARMGIEPL 116
Query: 121 MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK 180
+ C+ G+ F G LN G +L R L L + K + K +++G+NG
Sbjct: 117 LTCL---GEGF--GKLN-GVVLPLDPWKVRLLYLSTA--LSTIGK--KYKFRIALGLNGF 166
Query: 181 IWIRCESFSDTVRVGNLI 198
+WI E +D + +L+
Sbjct: 167 VWIEAEKDTDIRDIYHLL 184
>gi|414881125|tpg|DAA58256.1| TPA: hypothetical protein ZEAMMB73_922165, partial [Zea mays]
Length = 104
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
LG GLR+E I + +G LR KP Y+++ Q+RY+P+ D V+G+V D
Sbjct: 35 LGAGLRQECDTIQATSAGKLRQLKPNKYWIENSQKRYIPSVEDTVLGIVVDTKPD 89
>gi|401828613|ref|XP_003888020.1| RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999028|gb|AFM99039.1| RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 190
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
RY P D+VIG D +R+D+G +L L+F ATK+N P++ GD + K+
Sbjct: 50 RYHPCIDDIVIGKAMVTSQDIHRIDLGGV-VGILPSLSFTNATKRNKPEISKGDYLLCKI 108
Query: 111 LTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQK 170
+ +E + CV G+ F G LN L + LN L + K + K
Sbjct: 109 --SRMGIEPLLTCV---GEGF--GKLNGVVLPLDPWKIRLLYLNST---LSTIGK--KYK 156
Query: 171 MELSIGMNGKIWIRCESFSD 190
+++G+NG +WI E +D
Sbjct: 157 FRIALGLNGFVWIDAEKDTD 176
>gi|85000073|ref|XP_954755.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302901|emb|CAI75279.1| hypothetical protein, conserved [Theileria annulata]
Length = 162
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 24/150 (16%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAFEGATKKNPPKVETG------- 103
Y+P GD +IG++T++ D Y V+I + + V+ F G TKK P + G
Sbjct: 8 YIPKVGDHIIGIITNKNNDYYTVNINNLFNGYVMCIDGFRGTTKKYKPALNIGTFQIFIQ 67
Query: 104 -------DVVAGKLLTANKDMESEMVCV---DSRG---KEFIMGILNDGYLLHTSISLCR 150
DV+ + + N + E+ C+ D++ E G L+ G+L ++
Sbjct: 68 LDNVNYRDVIFCYVYSVNNNNLIELSCITTDDNKNWSTNETYFGQLSGGFLFPVPLNYI- 126
Query: 151 KLLNPKCPLLKQLAKRSRQKMELSIGMNGK 180
K+L + L+ QL S K E+ +G NG+
Sbjct: 127 KILYGEDNLVTQLL--SNLKYEIVLGFNGR 154
>gi|170290984|ref|YP_001737800.1| exosome complex RNA-binding protein Rrp4 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|380876878|sp|B1L6N8.1|ECR1_KORCO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|170175064|gb|ACB08117.1| KH type 1 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 228
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
Y+P DLVIG+V+ G+ VDI S L ++ GDV+ K+
Sbjct: 63 YIPKEDDLVIGIVSKISGNTILVDIRSPYQGALPIQRRAERVDLKKYDLKIGDVILAKVR 122
Query: 112 TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
+ + S ++ +D+ G +G L GYLL + +++ + +L L + +R
Sbjct: 123 SFD-GASSLILTIDAEG----LGKLEGGYLLEVDPAKVPRVIGKRQSMLSMLKEATRS-- 175
Query: 172 ELSIGMNGKIWIRCESFSDTV 192
E+ + NG+IW++ S + +
Sbjct: 176 EIIVANNGRIWVKPPSVKELI 196
>gi|414881124|tpg|DAA58255.1| TPA: hypothetical protein ZEAMMB73_922165 [Zea mays]
Length = 80
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 141 LLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIM 199
+ TS + R LL+ P CP+L+ L K+ E+++G+NG++W+ + S + V N IM
Sbjct: 1 MFDTSTGMSRMLLSSPTCPVLEVLGKK--LSFEIAVGLNGRVWVNAPAASTVILVSNAIM 58
Query: 200 SCELLS 205
E LS
Sbjct: 59 RSESLS 64
>gi|449330265|gb|AGE96525.1| hypothetical protein ECU09_1240 [Encephalitozoon cuniculi]
Length = 189
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
RY P D+VIG V D ++VD+G A+ S L+F ATK+N P+V GD + K+
Sbjct: 50 RYQPCIDDIVIGKVVLTSQDMHKVDLGGTVGALPS-LSFTNATKRNKPEVSKGDHLLCKI 108
Query: 111 LTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQK 170
+ E + CV G+ F G L L +S + L L + K+ R
Sbjct: 109 VRMG--TEPLLTCV---GEGF--GKLKGAVL---PLSPWKVRLLYLSDTLSTVGKKYR-- 156
Query: 171 MELSIGMNGKIWIRCESFSD 190
+++G+NG +WI E +D
Sbjct: 157 FRIALGLNGFVWIDAEKDTD 176
>gi|402216788|gb|EJT96871.1| exosome complex exonuclease rrp4 [Dacryopinax sp. DJM-731 SS1]
Length = 273
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G E +++ S SG + V +Q RY GDLV+G +T ++VD+
Sbjct: 18 GHGTFVEDGSVVASLSGTIERVNKLVS-VRALQTRYHGEVGDLVVGRITEVQAARWKVDV 76
Query: 77 GSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG------ 128
SH A+ LS + G ++ K+E+ ++ K + +E+ + G
Sbjct: 77 NSHQDAILRLSSVNLPGGVQRR--KLESDELEMRKFFEEGDLLVAEVQPMHGDGVLSLHT 134
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
+ G L +G L+ S L R+ C L ++L +GMNG IWI
Sbjct: 135 RSLKYGKLRNGQLISVSPVLIRRRSTHFCTL--------PCGVDLILGMNGYIWI 181
>gi|327400937|ref|YP_004341776.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
SNP6]
gi|327316445|gb|AEA47061.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
SNP6]
Length = 231
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 12/184 (6%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
M GD +S N PR G G E+ + G+L + + ++ RY+P+ GD+V
Sbjct: 7 MPGDLVSTN--PRA-AGYGTYVENGKVYAKILGLLDKSDTGVRIIP-LKGRYIPSTGDIV 62
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAF-EGATKKNPPKVETGDVVAGKLLTANKDMES 119
IG+V + + VDI S A L L + E +K ++ GD V K+L + M+
Sbjct: 63 IGIVREVTANGWVVDIYSPYQAFLPLLEYPETRNRKVNEILDIGDAVIAKVLNIDPKMKV 122
Query: 120 EMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG 179
+ K+ + + G ++ + + +++ K +++ L +S +++ +G NG
Sbjct: 123 TLTM-----KDKVCRPVRVGRIVAINPARVPRVIGKKGSMIRLL--KSELGVQIIVGQNG 175
Query: 180 KIWI 183
IW+
Sbjct: 176 LIWL 179
>gi|401888810|gb|EJT52759.1| exosome complex exonuclease rrp4 [Trichosporon asahii var. asahii
CBS 2479]
gi|406697467|gb|EKD00726.1| exosome complex exonuclease rrp4 [Trichosporon asahii var. asahii
CBS 8904]
Length = 277
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 14/179 (7%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G E+ I S +G L V + RYVP GDLVIG + G ++V+
Sbjct: 18 GHGTYVENDTITSSVAGTLERVNKLIS-VRPLSTRYVPEVGDLVIGRIVEVAGQRWKVEA 76
Query: 77 GSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG------ 128
+ AV LS + G ++ KVE+ + + L + +E+ S G
Sbjct: 77 NARQDAVLMLSSVNLPGGVQRR--KVESDSLKMREFLAEGDLLVAEVQAFFSDGAMSLHT 134
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCES 187
+ G L +G LL S L R+L K + A +++ +G+NG +W+ S
Sbjct: 135 RSLKYGKLRNGMLLSLSPRLIRRL---KSHFVHLPAPCGPHGVDVILGLNGYVWVSLGS 190
>gi|449453800|ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-like [Cucumis sativus]
Length = 327
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 21/192 (10%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ DT+ LN E ++ G G + ++ S G++ Y V ++ RY P GD+V
Sbjct: 37 VVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIY-VRALRARYKPEVGDIV 95
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
+G VT +R+DI AVL ++ P ++ +L + E++
Sbjct: 96 VGRVTEVAPKRWRLDINYCQDAVLML-----SSMNLPDGIQRRRTAVDELNMRSIFEEND 150
Query: 121 MVCVDSRGKEFIMGILNDGYLLHTSIS----LCRKLLNPKCPLLKQLAKRSRQKME---- 172
++C + R G+ +DG L L R L P L + K+ +E
Sbjct: 151 VICAEVR------GLQHDGLHLQARSQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGI 204
Query: 173 -LSIGMNGKIWI 183
L +G NG IWI
Sbjct: 205 DLILGCNGFIWI 216
>gi|85014359|ref|XP_955675.1| hypothetical protein ECU09_1240 [Encephalitozoon cuniculi GB-M1]
gi|19171369|emb|CAD27094.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
Length = 189
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
RY P D+VIG V D ++VD+G A+ S L+F ATK+N P+V GD + K+
Sbjct: 50 RYQPCIDDIVIGKVVLTSQDMHKVDLGGTVGALPS-LSFTNATKRNKPEVSKGDHLLCKI 108
Query: 111 LTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQK 170
+ E + CV G+ F G L L +S + L L + K+ R
Sbjct: 109 VRMG--TEPLLTCV---GEGF--GKLKGAVL---PLSPWKVRLLYLSDTLSIVGKKYR-- 156
Query: 171 MELSIGMNGKIWIRCESFSD 190
+++G+NG +WI E +D
Sbjct: 157 FRIALGLNGFVWIDAEKDTD 176
>gi|156937006|ref|YP_001434802.1| exosome complex RNA-binding protein Rrp4 [Ignicoccus hospitalis
KIN4/I]
gi|156565990|gb|ABU81395.1| ribosomal RNA-processing protein RRP4 [Ignicoccus hospitalis
KIN4/I]
Length = 239
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPK------VETGDV 105
Y+P GDLVIGVV + V +++VDI S +L G NP K ++ GD
Sbjct: 65 YIPKPGDLVIGVVENFVVTHWQVDINSPYIGILHVSNLLGRP-YNPAKDNLKEYLDIGDY 123
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
+ K+ + ++ + ++ V +G +G + +G ++ S +++ K +L +
Sbjct: 124 IIAKVESFDR-TKDPILNVQGKG----LGRVVEGKIVEIKPSRVPRVIGKKKSMLNVI-- 176
Query: 166 RSRQKMELSIGMNGKIWIRC 185
+ E+ +G NG+IWI+C
Sbjct: 177 KGDTGCEIIVGANGRIWIKC 196
>gi|303390811|ref|XP_003073636.1| S1-like RNA-binding domain-containing protein [Encephalitozoon
intestinalis ATCC 50506]
gi|303302783|gb|ADM12276.1| S1-like RNA-binding domain-containing protein [Encephalitozoon
intestinalis ATCC 50506]
Length = 195
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
RY P D+VIG D +R+D+G A+ S L+F ATK+N P++ GD + K+
Sbjct: 50 RYHPCIDDIVIGKAILTSQDMHRIDLGGVVGALPS-LSFTNATKRNKPEINKGDYLLCKI 108
Query: 111 LTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQK 170
A E + CV G+ F G L+ G +L R L L + K+ R
Sbjct: 109 --ARTGTEPLLTCV---GEGF--GKLS-GVVLPLEPWKVRLLY--LSTTLATIGKKYR-- 156
Query: 171 MELSIGMNGKIWIRCESFSD 190
+++G+NG +WI E +D
Sbjct: 157 FRIALGLNGFVWIDAEKDTD 176
>gi|302348937|ref|YP_003816575.1| exosome complex RNA-binding protein 1 [Acidilobus saccharovorans
345-15]
gi|302329349|gb|ADL19544.1| Probable exosome complex RNA-binding protein 1 [Acidilobus
saccharovorans 345-15]
Length = 234
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAF----EGATKKNPP--KVETGDV 105
Y P GD+VIG+VTS N+ +DI S A LS F +G + P ++ GD
Sbjct: 60 YFPNEGDIVIGLVTSHAAANWFLDINSPYQATLSIQDFFGVKQGGQVPDDPFTYLKIGDY 119
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
V +++ ++ + S + V +G +G + +G ++ +++ K +++ +
Sbjct: 120 VKARIVAFDR-VRSPALTVQDKG----LGRITEGTVVTVRPVKVPRIIGKKGSMIETI-- 172
Query: 166 RSRQKMELSIGMNGKIWIRCES 187
+S ++ + +NG++ I C++
Sbjct: 173 KSASGCDVFVAVNGRVHITCQN 194
>gi|14601413|ref|NP_147950.1| exosome complex RNA-binding protein Rrp4 [Aeropyrum pernix K1]
gi|29337016|sp|Q9YC02.1|ECR1_AERPE RecName: Full=Probable exosome complex RNA-binding protein 1
gi|160286342|pdb|2Z0S|A Chain A, Crystal Structure Of Putative Exosome Complex Rna-Binding
Protein
gi|5105132|dbj|BAA80446.1| exosome complex RNA-binding protein Rrp4 homologue [Aeropyrum
pernix K1]
Length = 235
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEG-----ATKKNPPKVETGDVV 106
YVP GD+VIG++ S N+ VDI S AVLS F G A ++ GD +
Sbjct: 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYI 121
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
K++ +K S ++ V G +G + G ++ S + +++ K +LK L ++
Sbjct: 122 KAKVVAFDK-TRSPLLTVQGEG----LGRIVRGKIVEISPAKVPRVIGRKMSMLKTLEEK 176
Query: 167 SRQKMELSIGMNGKIWIRC 185
+ K + + NG+I + C
Sbjct: 177 TECK--IFVARNGRIHLEC 193
>gi|429961738|gb|ELA41283.1| hypothetical protein VICG_01656 [Vittaforma corneae ATCC 50505]
Length = 194
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 76/145 (52%), Gaps = 13/145 (8%)
Query: 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET 102
Y++ + YVP + D+VIG V D Y+VD+GS +L L+F ATK+N P++E
Sbjct: 43 YFIMAKTKIYVPKQYDVVIGRVVYASQDYYKVDLGSC-TGILPALSFANATKRNRPELEK 101
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
+ V ++ + D ++ + C K+ +G +++ + + + N +L++
Sbjct: 102 ENTVLCQVERVS-DGDALLSC-----KKEGLGAIDECFPIESWKIRLLYFNN----VLQK 151
Query: 163 LAKRSRQKMELSIGMNGKIWIRCES 187
L+K + +++ +NG +WI ++
Sbjct: 152 LSK--NRSFRIALAINGFVWIDADA 174
>gi|352682027|ref|YP_004892551.1| exosome complex RNA-binding protein [Thermoproteus tenax Kra 1]
gi|350274826|emb|CCC81472.1| exosome complex RNA-binding protein [Thermoproteus tenax Kra 1]
Length = 236
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDP-------AVLSYLAFEGATKKNPPKVETGD 104
Y P +GD+VIG +T + + VDI + P AV Y+ E + + GD
Sbjct: 58 YRPKQGDIVIGYITDVLASGWEVDIRAPFPAWLPLNEAVTKYIDLERIALTS--LLNIGD 115
Query: 105 VVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLA 164
VV ++ + E + G+ +G + G++ S +++ K +L +
Sbjct: 116 VVIAQVKDIDLTDEYPVTLTLREGER--LGKIESGFIAEISPVKVPRVIGKKGSMLATI- 172
Query: 165 KRSRQKMELSIGMNGKIWIRC 185
S EL+IG NG+IW +C
Sbjct: 173 --SELGCELTIGQNGRIWAKC 191
>gi|296243061|ref|YP_003650548.1| ribosomal RNA-processing protein RRP4 [Thermosphaera aggregans DSM
11486]
gi|380876881|sp|D5U396.1|ECR1_THEAM RecName: Full=Probable exosome complex RNA-binding protein 1
gi|296095645|gb|ADG91596.1| ribosomal RNA-processing protein RRP4 [Thermosphaera aggregans DSM
11486]
Length = 247
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNP------PKVETGDV 105
Y+P + DLVIG+V + + +DI S P VL+ A E NP ++TGD
Sbjct: 70 YIPRKDDLVIGIVENVGVTAWTLDIRSPYPGVLN--ASEVIEGFNPLIHNLRNYLDTGDF 127
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
V G++ ++ + ++ V +G +G + +G ++ S +L+ + + L
Sbjct: 128 VIGRIALFDRTRDP-VITVKGKG----LGKITEGVVVDVKPSKIPRLIGKRGSMYNLLT- 181
Query: 166 RSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
S E++I NG +W++C D R LI + +L+
Sbjct: 182 -SMSGCEITIAQNGFVWLKCH---DENRAKVLIQAIKLIE 217
>gi|403221661|dbj|BAM39793.1| conserved hypothetical protein [Theileria orientalis strain
Shintoku]
Length = 268
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ GD +S +A L+ G G + + S SG+++H Y V+ RY+ GD+V
Sbjct: 8 LPGDVVSSDA-SYLLQGHGTHVSRNELKASYSGLVKHVNQLVY-VEPFSGRYMGQIGDIV 65
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
IG+V S G+ + +D+ S + A LS L N K++ L + SE
Sbjct: 66 IGIVESIQGNKWFLDVNSVERAHLSILQVNTEELANRRKIDEDVYEMSNLFRVKDIISSE 125
Query: 121 M--------VCVDSRGKEFIMGILNDGYLLHTSISL----CRKLLNPKCPLLKQLAKRSR 168
+ + + +R ++ G L++G L+ +L + + + +C +
Sbjct: 126 IQRISPSGTIILQTRTSKY--GRLDNGILVVVRPNLVMRQVKHIYDMECGV--------- 174
Query: 169 QKMELSIGMNGKIWIRCESFSD 190
+ +G NG IW+ SD
Sbjct: 175 ---RVIMGCNGYIWLTTWMTSD 193
>gi|161527939|ref|YP_001581765.1| exosome complex RNA-binding protein Rrp4 [Nitrosopumilus maritimus
SCM1]
gi|380876880|sp|A9A5C8.1|ECR1_NITMS RecName: Full=Probable exosome complex RNA-binding protein 1
gi|160339240|gb|ABX12327.1| KH type 1 domain protein [Nitrosopumilus maritimus SCM1]
Length = 226
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA--------FEGATKKNPPKVET 102
+Y+P DLVIG V S ++ +DI S + +L F + K+ T
Sbjct: 55 KYIPKINDLVIGKVNSHTSLSWELDINS---CYVGFLPAQDVFGRDFSAHADELATKLRT 111
Query: 103 GDVVAGKLLTANKDMESE-MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD+VA ++ AN D + +V + R +G ++ G L+ S S +L+ K +++
Sbjct: 112 GDLVAARI--ANFDRTRDPLVSISDRD----LGKIDSGVLMEISPSKVPRLIGKKGSMIQ 165
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCES 187
+ + + ++IG NG + + CES
Sbjct: 166 MIEEAT--DAAVTIGQNGWVVVSCES 189
>gi|171185835|ref|YP_001794754.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum neutrophilum
V24Sta]
gi|170935047|gb|ACB40308.1| RNA binding S1 domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 238
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKN-----PPKVETGDVV 106
Y P +GDLV+G VT + + VDI S PA YL A ++ P ++
Sbjct: 58 YRPKKGDLVVGYVTDVLATGWEVDIRSFMPA---YLPVSEALHRHVDLETTPLTTFLNIG 114
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
+ ++ V KE +G + G ++ S +++ K +L L +
Sbjct: 115 DVVVAKVKDVDLTDEYPVILTLKEERVGKVERGTVVEISPVKVPRVIGKKGSMLNTLMEL 174
Query: 167 SRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSY 206
S ++ +G NG+IW RC+ D V + +LI E S+
Sbjct: 175 S---CDIVVGQNGRIWARCKDARDEVFLASLIKKIETESH 211
>gi|407461956|ref|YP_006773273.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045578|gb|AFS80331.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
koreensis AR1]
Length = 226
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA--------FEGATKKNPPKVET 102
+Y+P DLVIG V S ++ +DI S + +L F + K++T
Sbjct: 55 KYIPKINDLVIGKVNSHTSLSWELDINS---CYVGFLPAQDVFGRDFSAHADELATKLKT 111
Query: 103 GDVVAGKLLTANKDMESE-MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD+VA ++ AN D + +V + R +G ++ G L+ S S +L+ K +++
Sbjct: 112 GDLVAARI--ANFDRTRDPLVSISDRD----LGKIDSGDLVEISPSKVPRLIGKKGSMIQ 165
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCES 187
+ + + ++IG NG + + CES
Sbjct: 166 MIEEAT--DAAITIGQNGWVVVSCES 189
>gi|385806379|ref|YP_005842777.1| exosome complex RNA-binding protein Rrp4 [Fervidicoccus fontis
Kam940]
gi|383796242|gb|AFH43325.1| exosome complex RNA-binding protein Rrp4 [Fervidicoccus fontis
Kam940]
Length = 242
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET------ 102
++ Y+P DLVIG++T VG Y D+ + P E ++ V+T
Sbjct: 60 EQIYIPKPNDLVIGLITD-VGPTYW-DVDLNSPYEGQLPVSETPLRQTHATVDTMRKFLS 117
Query: 103 -GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD VA K+L+ ++ + ++ + +G +G + G ++ + L+N K L++
Sbjct: 118 IGDFVALKVLSFDR-LRDPLLTMRGKG----LGKIYGGKVIDIAQHAVNSLINRKRALVE 172
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+ K + K E+ I NG++WI+ +D++ +++ + L ++ ++ S I F+
Sbjct: 173 AIVKET--KTEILISNNGRVWIKG---TDSILEDLAVLAIKKLESVDLYSITSSEIINFI 227
Query: 222 Q 222
Q
Sbjct: 228 Q 228
>gi|83754322|pdb|2BA0|A Chain A, Archaeal Exosome Core
gi|83754323|pdb|2BA0|B Chain B, Archaeal Exosome Core
gi|83754324|pdb|2BA0|C Chain C, Archaeal Exosome Core
Length = 229
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 25/191 (13%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ GD LS N PR G G E + G+ + + ++ RY P+ GD+V
Sbjct: 6 LPGDLLSTN--PRA-AGYGTYVEGGKVYAKIIGLFDQTETHVRVIP-LKGRYTPSVGDVV 61
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAF-------EGATKKNPPKV-ETGDVVAGKLLT 112
IG++ + + VDI S Y AF E K P +V + GD + K+L
Sbjct: 62 IGIIREVAANGWAVDIYS------PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 115
Query: 113 ANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
+ M+ + K+ I + G ++ + + +++ K ++K L +S ++
Sbjct: 116 IDPKMKVTLTM-----KDRICRPIRFGRIVAINPARVPRVIGKKGSMIKLL--KSELDVQ 168
Query: 173 LSIGMNGKIWI 183
+ +G NG IW+
Sbjct: 169 IVVGQNGLIWV 179
>gi|11498103|ref|NP_069328.1| exosome complex RNA-binding protein Rrp4 [Archaeoglobus fulgidus
DSM 4304]
gi|29336577|sp|O29758.1|ECR1_ARCFU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|2650134|gb|AAB90745.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 223
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 25/191 (13%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ GD LS N PR G G E + G+ + + ++ RY P+ GD+V
Sbjct: 6 LPGDLLSTN--PRA-AGYGTYVEGGKVYAKIIGLFDQTETHVRVIP-LKGRYTPSVGDVV 61
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAF-------EGATKKNPPKV-ETGDVVAGKLLT 112
IG++ + + VDI S Y AF E K P +V + GD + K+L
Sbjct: 62 IGIIREVAANGWAVDIYS------PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 115
Query: 113 ANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
+ M+ + K+ I + G ++ + + +++ K ++K L +S ++
Sbjct: 116 IDPKMKVTLTM-----KDRICRPIRFGRIVAINPARVPRVIGKKGSMIKLL--KSELDVQ 168
Query: 173 LSIGMNGKIWI 183
+ +G NG IW+
Sbjct: 169 IVVGQNGLIWV 179
>gi|389852858|ref|YP_006355092.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. ST04]
gi|388250164|gb|AFK23017.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. ST04]
Length = 264
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE S I + G++ K T V ++ Y+P GD VIG + ++ VDI
Sbjct: 26 GRGTFREGSRIYSTVIGLV-DIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDI 84
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVET--------GDVVAGKLLTANKDMESEMVCVDSRG 128
G+ PA L F T + + T GD++ K+ N E + + ++G
Sbjct: 85 GAPYPANLKIQDF---TDEKIDLIRTDLRKFFDIGDIIYAKVKAIN---EVNNIDLTTKG 138
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESF 188
F G L G ++ + S +++ ++ + K + + + +G NG IW+ ++
Sbjct: 139 MPFNGGPLRGGQIVKITPSKVPRVIGKGGSMINMIKKLTMSR--IIVGQNGWIWVNSKN- 195
Query: 189 SDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+ E L+ E IL + H R L
Sbjct: 196 ----------DALEKLAIEAILKIDRESHTRGL 218
>gi|284161627|ref|YP_003400250.1| KH type 1 domain-containing protein [Archaeoglobus profundus DSM
5631]
gi|284011624|gb|ADB57577.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
Length = 281
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 25/191 (13%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ GD LS N + GP E + + G+L + + ++ RYVP+ GD V
Sbjct: 10 LPGDLLSTNPK---TAGPNTYVEGNKVYARVLGLLDKTETMVKVIP-LKGRYVPSLGDTV 65
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATK-------KNPPKV-ETGDVVAGKLLT 112
IG+V + + VDI S Y+AF + K P +V + GD + K++
Sbjct: 66 IGIVKEVTANGWIVDILS------PYVAFLPVQENPAMRPNKKPNEVLDIGDAIIAKVMN 119
Query: 113 ANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
+ M + D + + G ++ + + +++ K ++K L +S ++
Sbjct: 120 IDPKMRVTLTMKDKLCRPIRV-----GRIVVINPTRVPRVIGKKGSMIKLL--KSELDVQ 172
Query: 173 LSIGMNGKIWI 183
+ +G NG IWI
Sbjct: 173 IIVGQNGLIWI 183
>gi|349604369|gb|AEP99939.1| Exosome complex exonuclease RRP40-like protein, partial [Equus
caballus]
Length = 65
Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 153 LNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
L P C +L++L K +E+ GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 1 LAPDCEILQELGKL--YPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 54
>gi|383319306|ref|YP_005380147.1| RNA-binding protein Rrp4 and related protein [Methanocella conradii
HZ254]
gi|379320676|gb|AFC99628.1| RNA-binding protein Rrp4 and related protein [Methanocella conradii
HZ254]
Length = 224
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAF-EGATKKNPPK-VETGDVVAG 108
RY+P RGDLVIG V N+ +DI S +L + E N K + G+++
Sbjct: 52 RYIPARGDLVIGKVVDVTFSNWIIDINSPYEGLLHVSEYPERVDPANMSKCLHVGELIIA 111
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSR 168
++ + M+ E+ D K +L G ++ S +++ ++ L K
Sbjct: 112 RVADVDPSMKVELTMRDEHLK-----VLKQGRVVDISHVKIPRVIGRNGSMISMLKK--D 164
Query: 169 QKMELSIGMNGKIWIRCES 187
+ + +G NG+IW++ +
Sbjct: 165 LNVSIFVGQNGRIWLKGDE 183
>gi|342873262|gb|EGU75469.1| hypothetical protein FOXB_14017 [Fusarium oxysporum Fo5176]
Length = 113
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 117 MESEMVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLLNPK------CPLLKQLAKRSRQ 169
M+ E+ CV S GK +G L G L S+ + R+L+ PK +L++L Q
Sbjct: 1 MDPEIECVSSSTGKSEGLGPLTGGMLYTVSLGMARRLMMPKSVQEGRVVVLEELGNAGLQ 60
Query: 170 KMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
E + G NGK W+ E+ + VG ++ +
Sbjct: 61 -FETATGRNGKFWVDSENVKTVIAVGRAVLETD 92
>gi|326428887|gb|EGD74457.1| hypothetical protein PTSG_05821 [Salpingoeca sp. ATCC 50818]
Length = 147
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 44 YVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIG 77
+VD + +R +P GD VIG++T G+NY VDIG
Sbjct: 85 WVDGVHKRALPAEGDYVIGIITGTPGENYNVDIG 118
>gi|340344303|ref|ZP_08667435.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519444|gb|EGP93167.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 226
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA--------FEGATKKNPPKVET 102
+Y+P DLVIG V S ++ +DI S + +L F + K++
Sbjct: 55 KYIPKIDDLVIGKVVSHTSLSWELDINS---CYVGFLPAQDVFGRDFSAHADELSSKLKA 111
Query: 103 GDVVAGKLLTANKDMESE-MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD+VA ++ AN D + +V + R +G ++ G+L+ S S +L+ + +++
Sbjct: 112 GDLVAARI--ANFDRTRDPLVTIADRD----LGKIDSGHLVSISTSKVPRLIGKRGTMIQ 165
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
+ + ++IG NG I + CE+ ++ I + +++ + NL + +
Sbjct: 166 MIEMATNAA--ITIGQNGWIVVSCETPEGLLKAKKAIKMVDEMAH--VANLTDQV 216
>gi|224133524|ref|XP_002321594.1| predicted protein [Populus trichocarpa]
gi|222868590|gb|EEF05721.1| predicted protein [Populus trichocarpa]
Length = 79
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 152 LLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
L +P CP+L+ L K+ E+++G+NG++W++ +S S + V N I+ E LS
Sbjct: 12 LSSPTCPVLEALGKK--LSFEIAVGLNGRVWVKADSPSTVIIVVNAIIKSESLS 63
>gi|282165298|ref|YP_003357683.1| putative exosome complex RNA-binding protein [Methanocella
paludicola SANAE]
gi|282157612|dbj|BAI62700.1| putative exosome complex RNA-binding protein [Methanocella
paludicola SANAE]
Length = 226
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAF-EGATKKNPPK-VETGDVVAG 108
RY+P RGDLVIG + N+ DI S +L F E N K + G+++
Sbjct: 54 RYIPARGDLVIGKIVDMTFSNWFADINSPYEGMLHISEFPERVDPANMGKYLHIGELIIA 113
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSR 168
++ + M+ E+ D + IL G ++ S +++ ++ L K
Sbjct: 114 RVEDVDPTMKVELTMRDEH-----LRILKQGRVIDISHVKIPRVIGRNGSMISMLKK--D 166
Query: 169 QKMELSIGMNGKIWIRCES 187
+ + +G NG+IW++ +
Sbjct: 167 LNVSIFVGQNGRIWMKGDD 185
>gi|296086683|emb|CBI32318.3| unnamed protein product [Vitis vinifera]
Length = 320
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 22/191 (11%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
DT+ +N E ++ G G ++ + G++ Y + ++ RY P GD+++G
Sbjct: 39 ADTIPVNYEDGVLKGHGTLDLDGEVVATLCGVVERVNKLVY-IRTLRARYKPETGDIIVG 97
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMV 122
VT +R+DI AVL ++ P ++ +L + E+++V
Sbjct: 98 RVTEIAPKRWRLDINFSQDAVLML-----SSMNLPDGIQRRRTAVDELNMRSIFEENDIV 152
Query: 123 CVDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPKCPLLK-QLAKRSRQKM--------E 172
C + RG + +DG L L KL + + L KR +Q + +
Sbjct: 153 CAEVRGFQ------HDGSLHLQARSQKYGKLERGQVLTISPYLVKRRKQHLHYLEEFGVD 206
Query: 173 LSIGMNGKIWI 183
L +G NG IW+
Sbjct: 207 LILGCNGFIWV 217
>gi|225436884|ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-like [Vitis vinifera]
Length = 330
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 22/191 (11%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
DT+ +N E ++ G G ++ + G++ Y + ++ RY P GD+++G
Sbjct: 39 ADTIPVNYEDGVLKGHGTLDLDGEVVATLCGVVERVNKLVY-IRTLRARYKPETGDIIVG 97
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMV 122
VT +R+DI AVL ++ P ++ +L + E+++V
Sbjct: 98 RVTEIAPKRWRLDINFSQDAVLML-----SSMNLPDGIQRRRTAVDELNMRSIFEENDIV 152
Query: 123 CVDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPKCPLLK-QLAKRSRQKM--------E 172
C + RG + +DG L L KL + + L KR +Q + +
Sbjct: 153 CAEVRGFQ------HDGSLHLQARSQKYGKLERGQVLTISPYLVKRRKQHLHYLEEFGVD 206
Query: 173 LSIGMNGKIWI 183
L +G NG IW+
Sbjct: 207 LILGCNGFIWV 217
>gi|84995806|ref|XP_952625.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302786|emb|CAI74893.1| hypothetical protein, conserved [Theileria annulata]
Length = 293
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
GD +S ++ L+ G G + S G ++H Y V+ +YV GD+VIG
Sbjct: 11 GDVVSSDSS-FLLQGHGTYVSDKQLRASYLGSVKHVNQLVY-VEPFGGKYVGQIGDIVIG 68
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMV 122
VV S G+ + +D+ S + A LS L N K++ L N + E+
Sbjct: 69 VVDSIQGNKWLLDVNSVELAQLSILQVNTEELANRRKIDEDIYEMSNLFNVNDIVSCEIQ 128
Query: 123 CVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ--LAKRSRQKMELSIGMNGK 180
+ S G +L T S KL N ++ + ++ + ++ G +G
Sbjct: 129 RISSTGT----------IMLQTRTSKYGKLENGILVKIRPNLVIRKGKHIYDMVCGFSGY 178
Query: 181 IWIRCE 186
IW+ +
Sbjct: 179 IWLTSQ 184
>gi|356572158|ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-like [Glycine max]
Length = 327
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 21/190 (11%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
D++ +N E ++ G G + ++ + G++ Y V ++ RY P GD+VIG
Sbjct: 39 ADSIHVNHEDGVLKGHGTADLNGEVVATLCGVVERVNKLVY-VRALRSRYKPEVGDIVIG 97
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMV 122
V +R++I + AVL ++ P V+ +L E+++V
Sbjct: 98 RVVEVAQKRWRLEINYNQDAVLLL-----SSMNMPDGVQRRRTAVDELNMRCIFEENDVV 152
Query: 123 CVDSRGKEFIMGILNDGYLLHTSI----SLCRKLLNPKCPLLKQLAKRSRQKME-----L 173
C + RG + +DG L L R L P L + K+ +E L
Sbjct: 153 CAEVRGFQ------HDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGIDL 206
Query: 174 SIGMNGKIWI 183
+G NG IW+
Sbjct: 207 ILGCNGFIWV 216
>gi|333986694|ref|YP_004519301.1| exosome complex RNA-binding protein 1 [Methanobacterium sp. SWAN-1]
gi|333824838|gb|AEG17500.1| exosome complex RNA-binding protein 1 [Methanobacterium sp. SWAN-1]
Length = 275
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 17 GPGLRRESSAILVSQSGI--LRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRV 74
G G RE+S I S G+ +R K V +Q +Y+P RGD+VIG VT + +
Sbjct: 24 GRGTFRENSNICSSLVGLVAIRDKK---ISVIPLQSKYIPKRGDVVIGEVTDIRFSMWNL 80
Query: 75 DIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIM 133
D+ S L G K+ + + GDV+ L E + V + +G+ +
Sbjct: 81 DVNSPYSGFLPASDVFGKEKRELSRTFDVGDVL---FLRVVDVDEVKKVKLGLKGRG--L 135
Query: 134 GILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
G G L++ + + +L+ K ++ + +R ++ +G NG +W++ E
Sbjct: 136 GKFRGGILINITPTKVPRLIGKKGSMINMIKDETR--CDVVVGQNGVVWVKGE 186
>gi|68073645|ref|XP_678737.1| exosome complex exonuclease rrp4 [Plasmodium berghei strain ANKA]
gi|56499299|emb|CAI04654.1| exosome complex exonuclease rrp4, putative [Plasmodium berghei]
Length = 326
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
+PR + G GL E G + + Y V+ ++ +Y + GDL++G + D
Sbjct: 63 KPRFLKGSGLYEEEENFCACLLGSVNYINKLVY-VEPLRGKYTGSVGDLLVGKIKDINND 121
Query: 71 NYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
+ V+IGS+ A+LS + ++ + + N + E
Sbjct: 122 KWVVEIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDVIACE---------- 171
Query: 131 FIMGILNDG-YLLHTSISLCRKLLNPKCPLLKQLAKRSRQK--------MELSIGMNGKI 181
+ IL DG +LHT S+ KL N + Q ++++K +++ +GMNG I
Sbjct: 172 -VQRILTDGCIILHTRSSIYGKLSNGILITVPQTLVQNQKKHIFVFPCNVQIILGMNGFI 230
Query: 182 WI 183
WI
Sbjct: 231 WI 232
>gi|167045223|gb|ABZ09883.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG8O8]
Length = 225
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 16/143 (11%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPP-------KVETGD 104
Y P DLVIG +TS ++ V+I S ++L AF+ K P K++TGD
Sbjct: 57 YTPKPDDLVIGKITSHTSFSWEVNINSFCVSILP--AFDIFGKDYSPSKDELSSKLKTGD 114
Query: 105 VVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLA 164
++ G+++ N + M G+ +G ++ G L+ S + +L+ +++ +
Sbjct: 115 LIVGRIVNVNPGRDPLMTI---NGEN--LGKIDSGELVKISPTKIPRLIGKDGSMIQTI- 168
Query: 165 KRSRQKMELSIGMNGKIWIRCES 187
+ +++G NG + ++C++
Sbjct: 169 -EAATNATITVGQNGLVVLKCDN 190
>gi|304314831|ref|YP_003849978.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588290|gb|ADL58665.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 287
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVV 106
+Q +Y+P RGD+VIG +T + +DI S +L G K+ V + GDV+
Sbjct: 54 LQSKYIPKRGDVVIGEITDIRFSMWGLDINSPYSGLLPASEVFGKEKRELENVFDIGDVL 113
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
LL E + V + +G+ +G DG L++ + + +L+ + ++ + ++
Sbjct: 114 ---LLRVVDVDEVKKVKLGLKGRG--LGKFRDGILVYITPTKVPRLIGKRGSMINMVKEK 168
Query: 167 SRQKMELSIGMNGKIWIRCE 186
+ ++ +G NG +WI+ E
Sbjct: 169 TH--CDIVVGQNGVVWIKGE 186
>gi|357478895|ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
gi|217074186|gb|ACJ85453.1| unknown [Medicago truncatula]
gi|355510788|gb|AES91930.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
gi|388516977|gb|AFK46550.1| unknown [Medicago truncatula]
Length = 327
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 21/190 (11%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
D++ +N E ++ G G ++ + G++ Y V ++ RY P GD+VIG
Sbjct: 39 ADSIPVNHEDGVLKGHGTADLDGEVVATLCGVVERVNKLVY-VRALRSRYKPEVGDIVIG 97
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMV 122
V +R+DI A L A P V+ +L E++++
Sbjct: 98 RVIEVAQKRWRLDINYSQNAYLMLSAM-----NMPDGVQRRRTALDELNMRCIFEEADVI 152
Query: 123 CVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPK-CPLLKQLAKRSRQK--------MEL 173
C + RG + +DG L KL + + L KR +Q ++L
Sbjct: 153 CAEVRGFQ------HDGLHLQARSQKYGKLSTGQLLTVTPYLVKRQKQHFHHLEQYGIDL 206
Query: 174 SIGMNGKIWI 183
IG NG IW+
Sbjct: 207 IIGCNGFIWV 216
>gi|242074666|ref|XP_002447269.1| hypothetical protein SORBIDRAFT_06g031660 [Sorghum bicolor]
gi|241938452|gb|EES11597.1| hypothetical protein SORBIDRAFT_06g031660 [Sorghum bicolor]
Length = 319
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 22/190 (11%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
DT+ +N E ++ G G + ++ + G++ Y V ++ RY P GD+++G
Sbjct: 40 DTIPVNQEDNILKGHGTSDQDGEVVATLCGVVERVNKLVY-VRTLRARYKPEVGDIIVGR 98
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V +R++I AVL ++ P ++ +L + E++++C
Sbjct: 99 VIEIAPKRWRLEINFSQDAVLML-----SSMNLPDGIQRRRTAVDELNMRSIFEENDVIC 153
Query: 124 VDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPKCPLL-KQLAKRSRQ--------KMEL 173
+ RG + +DG L L KL + ++ L KR +Q ++L
Sbjct: 154 AEVRGFQ------HDGSLHLQARSEKYGKLERGQLLMVPPYLVKRKKQHFHHLEQYNVDL 207
Query: 174 SIGMNGKIWI 183
+G NG IW+
Sbjct: 208 ILGCNGFIWV 217
>gi|118576720|ref|YP_876463.1| exosome complex RNA-binding protein [Cenarchaeum symbiosum A]
gi|118195241|gb|ABK78159.1| exosome complex RNA-binding protein [Cenarchaeum symbiosum A]
Length = 225
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGS----HDPAVLSY-LAFEGATKKNPPKVETGDVV 106
Y P GDLVIG VTS + V+I S PA + F+ + K+ G++V
Sbjct: 55 YYPKVGDLVIGKVTSHSSLAWEVEINSCYVGFLPASDVFGRGFDAQGDELSSKLAKGELV 114
Query: 107 AGKLLTANKDMESE-MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
A ++ AN D + +V V R +G ++ G L+ S S +L+ + +++ + K
Sbjct: 115 AARV--ANFDRTRDPLVTVAERD----LGKIDTGDLVTISPSKVARLIGKRGAMIETIEK 168
Query: 166 RSRQKMELSIGMNGKIWIRCES 187
+ ++IG NG++ + CES
Sbjct: 169 AT--GATVTIGQNGRVVVSCES 188
>gi|83286482|ref|XP_730181.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489830|gb|EAA21746.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 326
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
+PR + G GL E G + + Y V+ ++ +Y + GDL++G + D
Sbjct: 63 KPRFLKGSGLYEEEENFCACLLGSVNYINKLVY-VEPLRGKYTGSVGDLLVGKIKDINND 121
Query: 71 NYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
+ V+IGS+ A+LS + ++ + + N + E
Sbjct: 122 KWVVEIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDVIACE---------- 171
Query: 131 FIMGILNDG-YLLHTSISLCRKLLNPKCPLLKQLAKRSRQK--------MELSIGMNGKI 181
+ IL DG +LHT S+ KL N + Q ++++K +++ +GMNG I
Sbjct: 172 -VQRILTDGCIILHTRSSIYGKLSNGILITVPQTLVQNQKKHIFVFPCNVQIILGMNGFI 230
Query: 182 WI 183
WI
Sbjct: 231 WI 232
>gi|194704246|gb|ACF86207.1| unknown [Zea mays]
gi|414584980|tpg|DAA35551.1| TPA: hypothetical protein ZEAMMB73_729707 [Zea mays]
Length = 319
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 22/189 (11%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
DT+ +N E ++ G G + ++ + G++ Y V ++ RY P GD+++G
Sbjct: 40 DTIPVNQEDNILKGHGTSDQDGEVVATLCGVVERVNKLVY-VRTLRARYKPEVGDIIVGR 98
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V +R++I AVL ++ P ++ +L + E++++C
Sbjct: 99 VIEIAPKRWRLEINFSQDAVLML-----SSMNLPDGIQRRRTAVDELNMRSIFEENDVIC 153
Query: 124 VDSRGKEFIMGILNDGYLLHTSIS-----LCRKLLNPKCPLLKQLAKRSRQKME-----L 173
+ R G +DG L + S L R L P L + K+ +E L
Sbjct: 154 AEVR------GFQHDGSLHLQARSEKYGKLERGQLLMVAPYLVKRKKQHFHHLEKYNVDL 207
Query: 174 SIGMNGKIW 182
+G NG IW
Sbjct: 208 ILGCNGFIW 216
>gi|15218790|ref|NP_171835.1| exosome complex component RRP4 [Arabidopsis thaliana]
gi|3850568|gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from
Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis
thaliana]
gi|34365689|gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana]
gi|51970606|dbj|BAD43995.1| hypothetical protein [Arabidopsis thaliana]
gi|332189442|gb|AEE27563.1| exosome complex component RRP4 [Arabidopsis thaliana]
Length = 322
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 26/192 (13%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
D++ +N + + G G +L + G++ Y V ++ RY P GD+V+G
Sbjct: 42 DSIPVNHDDAFLKGHGTSEVDGELLATVCGVVERVDKLVY-VRTLRARYKPEVGDIVVGR 100
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V +RV++ + VL ++ P ++ +L N +E ++VC
Sbjct: 101 VIEVAQKRWRVELNFNQDGVLML-----SSMNMPDGIQRRRTSVDELNMRNIFVEHDVVC 155
Query: 124 VDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPKCPLLK---QLAKRSRQK--------M 171
+ R + +DG L L KL K LLK L KRS+ +
Sbjct: 156 AEVRNFQ------HDGSLQLQARSQKYGKL--EKGQLLKVDPYLVKRSKHHFHYVESLGI 207
Query: 172 ELSIGMNGKIWI 183
+L IG NG IW+
Sbjct: 208 DLIIGCNGFIWV 219
>gi|222444526|ref|ZP_03607041.1| hypothetical protein METSMIALI_00138 [Methanobrevibacter smithii
DSM 2375]
gi|261350935|ref|ZP_05976352.1| putative exosome complex RNA-binding protein 1 [Methanobrevibacter
smithii DSM 2374]
gi|222434091|gb|EEE41256.1| KH domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860273|gb|EFC92571.1| putative exosome complex RNA-binding protein 1 [Methanobrevibacter
smithii DSM 2374]
Length = 298
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
Query: 10 AEPRLILGPGLRRESSAILVSQSGI--LRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
A+ G G +E+ I S G+ LR+ K V ++ +YVP +GD+VIG +
Sbjct: 17 ADDEYYSGRGTFKENGKICSSLMGLVSLRNKK---IRVIPLKSKYVPKKGDVVIGKIKDV 73
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDS 126
+ VDI S +L G KK KV + GDV+ L E + V +
Sbjct: 74 RFSMWDVDINSPYSGILPAFEVFGREKKELNKVFDVGDVL---FLRVVDVDEVKKVKLGL 130
Query: 127 RGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
+G+ MG G ++ + + +L+ K ++ + ++ K + +G NG +W++ E
Sbjct: 131 KGRG--MGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCK--IIVGQNGLVWVKGE 186
Query: 187 S 187
Sbjct: 187 E 187
>gi|148642303|ref|YP_001272816.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
smithii ATCC 35061]
gi|166919579|sp|A5UJS0.1|ECR1_METS3 RecName: Full=Probable exosome complex RNA-binding protein 1
gi|148551320|gb|ABQ86448.1| RNA-binding protein Rrp4 [Methanobrevibacter smithii ATCC 35061]
Length = 298
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 10 AEPRLILGPGLRRESSAILVSQSGI--LRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
A+ G G +E+ I S G+ LR+ K V ++ +YVP +GD+VIG +
Sbjct: 17 ADDEYYSGRGTFKENGKICSSLMGLVSLRNKK---IRVIPLKSKYVPKKGDVVIGKIKDV 73
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDS 126
+ VDI S +L G KK KV + GDV+ +++ ++ + ++ +
Sbjct: 74 RFSMWDVDINSPYSGILPAFEVFGREKKELNKVFDVGDVLFLRVVDVDEVKKVKL-GLKG 132
Query: 127 RGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
RG MG G ++ + + +L+ K ++ + ++ K + +G NG +W++ E
Sbjct: 133 RG----MGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCK--IIVGQNGLVWVKGE 186
Query: 187 S 187
Sbjct: 187 E 187
>gi|115459464|ref|NP_001053332.1| Os04g0520000 [Oryza sativa Japonica Group]
gi|21741863|emb|CAD41453.1| OSJNBa0019D11.5 [Oryza sativa Japonica Group]
gi|113564903|dbj|BAF15246.1| Os04g0520000 [Oryza sativa Japonica Group]
gi|116310818|emb|CAH67607.1| OSIGBa0145G11.6 [Oryza sativa Indica Group]
gi|215736890|dbj|BAG95819.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195230|gb|EEC77657.1| hypothetical protein OsI_16671 [Oryza sativa Indica Group]
Length = 315
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 22/190 (11%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
DT+ +N E ++ G G + ++ + G++ Y V ++ RY P GD+++G
Sbjct: 36 DTIPVNDEDNILKGHGTSDQDGEVVATLCGVVERVNKLVY-VRTLRARYKPEVGDIIVGR 94
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V +R++I AVL ++ P ++ +L E++++C
Sbjct: 95 VIEIAPKRWRLEINFSQDAVLML-----SSMNLPDGIQRRRTAVDELNMRTIFEENDVIC 149
Query: 124 VDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPKCPLL-KQLAKRSRQK--------MEL 173
+ RG + +DG L L KL + ++ L KR +Q ++L
Sbjct: 150 AEVRGFQ------HDGSLHLQARSQKYGKLERGQLLVVPAYLVKRRKQHFHHLEQYDVDL 203
Query: 174 SIGMNGKIWI 183
+G NG IW+
Sbjct: 204 ILGCNGFIWV 213
>gi|413950818|gb|AFW83467.1| hypothetical protein ZEAMMB73_643656 [Zea mays]
Length = 66
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 117 MESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRS 167
M + C D+ GK G L DGY+ TS + R LL+ P CP+L+ L K++
Sbjct: 1 MNPGLSCRDATGKAAEFGQLKDGYMFDTSTGMSRMLLSTPTCPVLEALGKKN 52
>gi|386002839|ref|YP_005921138.1| Exosome complex RNA-binding protein RRP4 [Methanosaeta harundinacea
6Ac]
gi|357210895|gb|AET65515.1| Exosome complex RNA-binding protein RRP4 [Methanosaeta harundinacea
6Ac]
Length = 232
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDV----- 105
+YVP GD VIG V V N+ V+I S +L P K+E ++
Sbjct: 63 KYVPAPGDTVIGTVQDIVFSNWIVNINSPYEGLLHISEL-------PRKIEMNEMSKYLR 115
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
+ ++T KD++S M V+ + +GIL G + S + +L+ ++ L K
Sbjct: 116 IGSSVMTRVKDVDSTM-KVELTMNDRRLGILTRGRVAEISPTRVPRLIGKGGSMINMLKK 174
Query: 166 RSRQKMELSIGMNGKIWI 183
L +G NG+IW+
Sbjct: 175 --ELNCNLFVGQNGRIWV 190
>gi|386876615|ref|ZP_10118714.1| KH domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386805577|gb|EIJ65097.1| KH domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 226
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGS----HDPAVLSY-LAFEGATKKNPPKVETGDV 105
+Y+P DLVIG V S ++ +DI S PA + F + K+++GD+
Sbjct: 55 KYIPKINDLVIGKVISHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELATKLKSGDL 114
Query: 106 VAGKLLTANKDMESE-MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLA 164
VA ++ AN D + +V + R +G ++ G L+ S S +L+ + +++ +
Sbjct: 115 VAARI--ANFDRTRDPLVTISDRD----LGKIDSGDLIKISPSKVPRLIGKRGTMIQMIE 168
Query: 165 KRSRQKMELSIGMNGKIWIRCES 187
+ ++IG NG + + CES
Sbjct: 169 MAT--DAAITIGQNGWVVVSCES 189
>gi|384251998|gb|EIE25475.1| hypothetical protein COCSUDRAFT_22697 [Coccomyxa subellipsoidea
C-169]
Length = 310
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 86/192 (44%), Gaps = 24/192 (12%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
GDT+ + + + G G + S ++ + G++ V +Q+RY GD+VIG
Sbjct: 38 GDTIDTDMQEGFLRGHGTQVVDSKLVATVCGLVERVNKLVS-VRPLQQRYSAALGDIVIG 96
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAFE---GATKKNPPKVE--------TGDVVAGKLL 111
V G +++D+ + L + + GA ++ + E GD+++ ++
Sbjct: 97 RVAEVAGKRWKIDLNARQDVALQLSSVDLPGGAQRRRTAEDEINMRSIFQEGDLISAEVQ 156
Query: 112 TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
+ + D + + +R ++ G L+ G ++ S +L ++ +L L +
Sbjct: 157 SLHADGS---IALHTRSTKY--GKLSGGQVVTVSPNLIKR-QKQHFNVLASLG------V 204
Query: 172 ELSIGMNGKIWI 183
E+ +G NG IW+
Sbjct: 205 EIILGCNGMIWV 216
>gi|375082089|ref|ZP_09729159.1| exosome complex RNA-binding protein Rrp4 [Thermococcus litoralis
DSM 5473]
gi|374743302|gb|EHR79670.1| exosome complex RNA-binding protein Rrp4 [Thermococcus litoralis
DSM 5473]
Length = 251
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G +E + I + G++R + T V ++ Y+P GD VIG + N+ VDI
Sbjct: 26 GRGTFKEGNRIYSTVVGLVRISND-TVSVVPLEGPYIPEVGDSVIGKIVDVKFSNWVVDI 84
Query: 77 GSHDPAVLSYL-AFEGAT---KKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
G+ A L A EG K + K+ + GD++ K+ N+ + +++ ++G F
Sbjct: 85 GAPYQATLRVQDAVEGKIDILKTDLRKLFDIGDIIYAKVKAFNEINQIDLI---TKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G L+ + S +L+ ++ + + + + +G NG +W+ +
Sbjct: 142 NGGPLKGGQLVKITPSKVPRLIGKGGSMINMIKNLTNTR--IIVGQNGWVWVSGRN---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
E L+ E IL + H + L
Sbjct: 196 -------EELEKLAIEAILKVDRESHTQGL 218
>gi|15678711|ref|NP_275827.1| exosome complex RNA-binding protein Rrp4 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336574|sp|O26780.1|ECR1_METTH RecName: Full=Probable exosome complex RNA-binding protein 1
gi|2621769|gb|AAB85189.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 311
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 10 AEPRLILGPGLRRESSAILVSQSGIL--RHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
AE G G +E + I S G++ R+ K V +Q +Y+P RGD+VIG +T
Sbjct: 17 AENEYFPGRGTFKEDNRICSSFVGLVSVRNKK---INVIPLQSKYIPKRGDVVIGEITDI 73
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
+ +DI S +L G K+ V D+V LL E + V + +
Sbjct: 74 RFSMWGLDINSPYTGLLPASEVFGKDKRELESV--FDIVDVLLLRVVDVDEVKKVKLGLK 131
Query: 128 GKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
G+ +G DG L++ + + +L+ + ++ + +++ ++ +G NG +WI+ E
Sbjct: 132 GRG--LGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTH--CDIVVGQNGVVWIKGE 186
>gi|159488815|ref|XP_001702398.1| hypothetical protein CHLREDRAFT_108094 [Chlamydomonas reinhardtii]
gi|158271192|gb|EDO97018.1| predicted protein [Chlamydomonas reinhardtii]
Length = 306
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 34/197 (17%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
GD +S + + G G + ++ + G++ Y V + RY +GD+V+G
Sbjct: 20 GDEISTEGQEGFLRGHGTQVVDGKLVATVCGVVERVNKLIY-VKTLNSRYNAEQGDVVVG 78
Query: 63 VVTSRVGDNYRVDIGSHDPA--VLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
V G +RVD+ S A +LS + G ++ + +L + E E
Sbjct: 79 RVADLAGKAWRVDLKSRQEAKLLLSAVHLPGGIQRRRNAED-------ELNMRSFFREGE 131
Query: 121 MVCVDSRGKEFIMGILNDGYL-LHTSIS-----LCRKLLNPKCPLLKQLAKRSRQK---- 170
++ + + + DG + LHT + +C +LL + L KR +Q
Sbjct: 132 LISAE------VQSVHADGSVALHTRSAKYGKLVCGQLLE----VPPNLIKRQKQHFHTL 181
Query: 171 ----MELSIGMNGKIWI 183
+EL IG NG +W+
Sbjct: 182 EALGVELIIGCNGLVWV 198
>gi|449533228|ref|XP_004173578.1| PREDICTED: exosome complex component rrp4-like, partial [Cucumis
sativus]
Length = 153
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ DT+ LN E ++ G G + ++ S G++ Y V ++ RY P GD+V
Sbjct: 37 VVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIY-VRALRARYKPEVGDIV 95
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVL 84
+G VT +R+DI AVL
Sbjct: 96 VGRVTEVAPKRWRLDINYCQDAVL 119
>gi|405117451|gb|AFR92226.1| exosome complex exonuclease rrp4 [Cryptococcus neoformans var.
grubii H99]
Length = 331
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 26/181 (14%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G E S ++ S +G + V ++ RY P GDLVIG + +RVD
Sbjct: 66 GHGTYVEESNVVASVAGTIERVNKLIS-VRPLRSRYTPEVGDLVIGRIVDVGAQRWRVDA 124
Query: 77 GSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG------ 128
AV LS + G ++ K+E+ + + L + +E+ G
Sbjct: 125 NGRQDAVLMLSSVNLPGGVQRR--KIESDALKMREFLAEGDLLVAEVQAFFGDGAMSLHT 182
Query: 129 KEFIMGILNDGYLLHTSISLCRKL------LNPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
+ G L +G+LL L R+L + P C +++ +G+NG +W
Sbjct: 183 RSLKYGKLRNGFLLTVPPQLIRRLKSHFYHIPPPC---------GPTGVDVILGLNGYVW 233
Query: 183 I 183
+
Sbjct: 234 V 234
>gi|410721459|ref|ZP_11360794.1| RNA-binding protein Rrp4 [Methanobacterium sp. Maddingley MBC34]
gi|410598916|gb|EKQ53479.1| RNA-binding protein Rrp4 [Methanobacterium sp. Maddingley MBC34]
Length = 248
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVV 106
+Q +Y+P RGD+VIG V+ + +DI S +L G K++ + GDV+
Sbjct: 54 LQSKYIPKRGDVVIGKVSDIRFSMWNLDINSPYSGILPAAEVFGKEKRDLNRAFNVGDVL 113
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
+++ ++ + ++ + RG +G G L++ + + +L+ K ++ + +
Sbjct: 114 FLRVVDVDEVKKVKL-GLKGRG----LGKFRGGILINITPTKVPRLIGKKGSMINMIKDQ 168
Query: 167 SRQKMELSIGMNGKIWIR 184
+R E+ +G NG +W++
Sbjct: 169 TR--CEVVVGQNGVVWVK 184
>gi|14520825|ref|NP_126300.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus abyssi GE5]
gi|29337011|sp|Q9V120.1|ECR1_PYRAB RecName: Full=Probable exosome complex RNA-binding protein 1
gi|5458041|emb|CAB49531.1| Predicted exosome subunit, RNA-binding protein rrp4 [Pyrococcus
abyssi GE5]
gi|380741367|tpe|CCE70001.1| TPA: exosome complex RNA-binding protein Rrp4 [Pyrococcus abyssi
GE5]
Length = 265
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE S I + G++ K T V ++ Y+P GD VIG + ++ VDI
Sbjct: 26 GRGTFREGSRIYSTVIGLV-DIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDI 84
Query: 77 GSHDPAVLSYLAFEGAT----KKNPPK-VETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
G+ PA L F + + K + GD++ K+ E + + ++G F
Sbjct: 85 GAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIYAKVKAIT---EVNNIDLTTKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G ++ + S +++ ++ + K + + + +G NG IW+ ++
Sbjct: 142 NGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR--IIVGQNGWIWVSGKN---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+ E L+ E IL + + H R L
Sbjct: 196 -------DALEKLAIEAILKIDKESHTRGL 218
>gi|435852005|ref|YP_007313591.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Methanomethylovorans hollandica DSM 15978]
gi|433662635|gb|AGB50061.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Methanomethylovorans hollandica DSM 15978]
Length = 270
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET-------- 102
+Y+P+R DLVIG V N+ DIGS +L + P +VE+
Sbjct: 52 KYIPSRKDLVIGTVFETTSSNWIFDIGSPYDGLLHVSEY-------PRRVESSMMREIFN 104
Query: 103 -GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD ++ + M+ E+ + +G I G G LL + +++ ++
Sbjct: 105 IGDCAILRIKDVDASMKIEL-TLREKGLRKIKG----GRLLEVPPTKVPRVIGHNGSMVS 159
Query: 162 QLAKRSRQKMELSIGMNGKIWI 183
L K + E+ +G NG+IWI
Sbjct: 160 MLKKET--DCEIFVGQNGRIWI 179
>gi|297843148|ref|XP_002889455.1| ATRRP4 [Arabidopsis lyrata subsp. lyrata]
gi|297335297|gb|EFH65714.1| ATRRP4 [Arabidopsis lyrata subsp. lyrata]
Length = 322
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
D++ +N + + G G +L + G++ Y V ++ RY P GD+V+G
Sbjct: 42 DSIPVNHDDAFLKGHGTSEVDGELLATVCGVVERVDKLVY-VRTLRARYKPEVGDIVVGR 100
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V +RV++ VL ++ P ++ +L N +E ++VC
Sbjct: 101 VIEVAQKRWRVELNFTQDGVLML-----SSMNMPDGIQRRRTSVDELNMRNIFVEHDVVC 155
Query: 124 VDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPKCPLLK---QLAKRSRQK--------M 171
+ R + +DG L L KL K LLK L KRS+ +
Sbjct: 156 AEVRNFQ------HDGSLQLQARSQKYGKL--EKGQLLKVDPYLVKRSKHHFHYVESLGI 207
Query: 172 ELSIGMNGKIWI 183
+L IG NG IW+
Sbjct: 208 DLIIGCNGFIWV 219
>gi|408382266|ref|ZP_11179811.1| exosome complex RNA-binding protein Rrp4 [Methanobacterium
formicicum DSM 3637]
gi|407814922|gb|EKF85544.1| exosome complex RNA-binding protein Rrp4 [Methanobacterium
formicicum DSM 3637]
Length = 247
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVV 106
+Q +Y+P RGD+VIG V+ + +DI S +L G K++ + GDV+
Sbjct: 54 LQSKYIPKRGDVVIGKVSDIRFSMWNLDINSPYSGILPAAEVFGKEKRDLNRAFNVGDVL 113
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
L E + V + +G+ +G G L++ + + +L+ K ++ + +
Sbjct: 114 ---FLRVVDVDEVKKVKLGLKGRG--LGKFRGGILINITPTKVPRLIGKKGSMINMIKDQ 168
Query: 167 SRQKMELSIGMNGKIWIR 184
+R E+ +G NG +W++
Sbjct: 169 TR--CEVVVGQNGVVWVK 184
>gi|58258185|ref|XP_566505.1| exosome complex exonuclease rrp4 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106127|ref|XP_778074.1| hypothetical protein CNBA0770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260777|gb|EAL23427.1| hypothetical protein CNBA0770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222642|gb|AAW40686.1| exosome complex exonuclease rrp4, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 331
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 26/181 (14%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G E S ++ S +G + V ++ RY P GDLVIG + +RVD
Sbjct: 66 GHGTYVEESNVVSSVAGTIERVNKLIS-VRPLRSRYTPEVGDLVIGRIVEVGAQRWRVDA 124
Query: 77 GSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG------ 128
AV LS + G ++ K+E+ + + L + +E+ G
Sbjct: 125 NGRQDAVLMLSSVNLPGGVQRR--KIESDALKMREFLAEGDLLVAEVQAFFGDGAMSLHT 182
Query: 129 KEFIMGILNDGYLLHTSISLCRKL------LNPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
+ G L +G+LL L R+L + P C +++ +G+NG +W
Sbjct: 183 RSLKYGKLRNGFLLTVPPQLIRRLKSHFYHIPPPC---------GPTGVDVILGLNGYVW 233
Query: 183 I 183
+
Sbjct: 234 V 234
>gi|116754660|ref|YP_843778.1| exosome complex RNA-binding protein Rrp4 [Methanosaeta thermophila
PT]
gi|116666111|gb|ABK15138.1| ribosomal RNA-processing protein RRP4 [Methanosaeta thermophila PT]
Length = 221
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDV----- 105
+Y+P GD VIGVV N+ +DI S +L F P K++ D+
Sbjct: 52 KYIPAVGDNVIGVVKDITFSNWILDINSPYDGLLHISEF-------PKKIDVEDMSKYLR 104
Query: 106 ----VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
V ++ + M+ E+ D R +G++ G ++ S + +L+ ++
Sbjct: 105 IGSSVMARVKDVDPAMKVELTLNDRR-----LGVIKTGRVVEISHTRVPRLIGKGGSMIS 159
Query: 162 QLAKRSRQKMELSIGMNGKIWI 183
L K + +G NG+IW+
Sbjct: 160 MLKK--ELNCNIFVGQNGRIWV 179
>gi|380491512|emb|CCF35268.1| exosome complex exonuclease RRP4 [Colletotrichum higginsianum]
Length = 344
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 17/155 (10%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE---GATKKNPPKVE--- 101
++ RY P GDLV+G + +RVD+GS A+L A G +K E
Sbjct: 103 LRARYTPEIGDLVVGRIVEVQAKRWRVDVGSSQLAILQISAINLPGGILRKRTDTDELQI 162
Query: 102 -----TGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDG-YLLHTSISLCRKLLNP 155
GD+V ++ ++D + + + G L +G ++ T ++
Sbjct: 163 RSFFAEGDLVVAEVQQLHQDGAASLHT-----RSLKYGKLRNGVFVAVTGTGGGGGVVRA 217
Query: 156 KCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSD 190
K A R K+ +++G+NG IWI SD
Sbjct: 218 KRQQWVMDAARGASKVHVTLGVNGFIWISKHVESD 252
>gi|330508836|ref|YP_004385264.1| exosome complex RNA-binding protein RRP4 [Methanosaeta concilii
GP6]
gi|328929644|gb|AEB69446.1| exosome complex RNA-binding protein RRP4 [Methanosaeta concilii
GP6]
Length = 221
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDV----- 105
+Y+P GD VIGVV N+ VDI S +L F P ++E+ ++
Sbjct: 52 KYMPAPGDNVIGVVKDITFSNWIVDINSPYDGLLHISEF-------PKRIESDEMSKYLR 104
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
+ ++T KD++ M V+ + +G + G ++ S + +L+ ++ L K
Sbjct: 105 IGSSIMTRVKDVDPTM-KVELTLNDRKLGPIRTGQVIEISHTRVPRLIGKGGSMISMLKK 163
Query: 166 RSRQKMELSIGMNGKIWIR-CESFSD 190
+ +G NG+IWI C +D
Sbjct: 164 EV--NCSIFVGQNGRIWINGCADDTD 187
>gi|307594972|ref|YP_003901289.1| K-like, type 1, subgroup [Vulcanisaeta distributa DSM 14429]
gi|307550173|gb|ADN50238.1| K-like, type 1, subgroup [Vulcanisaeta distributa DSM 14429]
Length = 245
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 22/162 (13%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET--------- 102
Y P GD+VIG V + +DI S A YL + AT K P + T
Sbjct: 60 YKPRVGDIVIGYVIDIGLTGWVIDIKSPYSA---YLPIQEATLK-PVDLMTVDLKSLLGI 115
Query: 103 GDVVAGKLLTAN--KDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLL 160
GD+V +++ N KD + ++R +G + G L+ S +++ + ++
Sbjct: 116 GDIVLARIIDFNLTKDYPVTLTLKEAR-----LGRIEGGTLVEIDASKVARVIGRRGSMV 170
Query: 161 KQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE 202
++ ++++G NG++WIRC D V +I E
Sbjct: 171 SIFSEE--LGCDVTVGQNGRVWIRCRDPGDESFVARVIKLIE 210
>gi|310792841|gb|EFQ28302.1| exosome complex exonuclease RRP4 [Glomerella graminicola M1.001]
Length = 344
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 17/155 (10%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE---GATKKNPPKVE--- 101
++ RY P GDLV+G + +RVD+GS A+L A G +K E
Sbjct: 103 LRARYTPEIGDLVVGRIVEVQAKRWRVDVGSSQLAILQISAINLPGGILRKRTDTDELQI 162
Query: 102 -----TGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDG-YLLHTSISLCRKLLNP 155
GD+V ++ ++D + + + G L +G ++ T ++
Sbjct: 163 RSFFAEGDLVVAEVQQLHQDGAASLHT-----RSLKYGKLRNGVFVAVTGTGGGGGVVRA 217
Query: 156 KCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSD 190
K A R K+ +++G+NG IWI SD
Sbjct: 218 KRQQWVMDAARGASKVHVTLGVNGFIWISKHVESD 252
>gi|440492449|gb|ELQ75014.1| Exosomal 3'-5' exoribonuclease complex subunit Rrp40, partial
[Trachipleistophora hominis]
Length = 139
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 70 DNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGK 129
D ++D G +L AF +TK+N PKV GD + +++ D+ C +
Sbjct: 12 DYIKLDFGYAIKGILLAQAFLNSTKRNRPKVNIGDFLLCRIIRVG-DVVFVSCCEEG--- 67
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
+G+L G++ + L K +L + + + K+ L G+NG IWI
Sbjct: 68 ---LGVLEGGWVFEIEAWAVKTLFVRK-NILSDIGRDYKYKVAL--GLNGMIWI 115
>gi|124027455|ref|YP_001012775.1| exosome complex RNA-binding protein Rrp4 [Hyperthermus butylicus
DSM 5456]
gi|123978149|gb|ABM80430.1| predicted RNA binding protein Rrp4 [Hyperthermus butylicus DSM
5456]
Length = 239
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-----AFEGATKKNPPKVETGDVV 106
Y+P GD+VIG+V ++ VDI S +L+ F AT ++ GD +
Sbjct: 66 YIPRPGDIVIGLVRDIGLTHWEVDIASPYKGILTVQEVLDRPFNPATDSLKKYLDVGDYI 125
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
K++ ++ + ++ + +G +G + +G ++ S +++ K ++ + +
Sbjct: 126 VAKIVAFDRARDP-LLTIKGKG----LGRIVEGSIVEIKPSRVPRVIGKKGSMVNMIMQE 180
Query: 167 SRQKMELSIGMNGKIWIRC 185
+ E+ +G NG+I ++C
Sbjct: 181 T--GCEVLVGQNGRILVKC 197
>gi|321252681|ref|XP_003192490.1| exosome complex exonuclease rrp4 [Cryptococcus gattii WM276]
gi|317458958|gb|ADV20703.1| Exosome complex exonuclease rrp4, putative [Cryptococcus gattii
WM276]
Length = 331
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G E S ++ S +G + V + RY P GDLVIG + +RVD
Sbjct: 66 GHGTYVEESNVVSSVAGTIERVNKLIS-VRPLHSRYTPEVGDLVIGRIVEVGAQRWRVDA 124
Query: 77 GSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG------ 128
AV LS + G ++ K+E+ + + L + +E+ G
Sbjct: 125 NGRQDAVLMLSSVNLPGGVQRR--KIESDALKMREFLAEGDLLVAEVQAFFGDGAMSLHT 182
Query: 129 KEFIMGILNDGYLLHTSISLCRKL------LNPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
+ G L +G+LL L R+L + P C +++ +G+NG +W
Sbjct: 183 RSLKYGKLRNGFLLTVPPQLIRRLKSHFYHVPPPC---------GPTGVDVILGLNGYVW 233
Query: 183 I 183
+
Sbjct: 234 V 234
>gi|412990477|emb|CCO19795.1| hypothetical protein Bathy14g02120 [Bathycoccus prasinos]
Length = 160
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
Y+P GD+++G+V + + +D + A L + +++ G V+ ++
Sbjct: 12 YLPIEGDIILGIVAEKSSSHLLIDCKAKKLAKLLVMNSARDLLLKSDRIQIGTVLCCRVQ 71
Query: 112 TANKDMESEMV-CVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQK 170
T S V C S +L G++ + R LL+ K L K +
Sbjct: 72 TIGYKCTSFTVSCSQSAATH---ALLQKGFIFQVLPLVARMLLHSKDVLTKSI--NISHP 126
Query: 171 MELSIGMNGKIWIR 184
+E+++G NG IW
Sbjct: 127 LEIAVGYNGLIWFH 140
>gi|302833054|ref|XP_002948091.1| hypothetical protein VOLCADRAFT_73556 [Volvox carteri f.
nagariensis]
gi|300266893|gb|EFJ51079.1| hypothetical protein VOLCADRAFT_73556 [Volvox carteri f.
nagariensis]
Length = 321
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 24/192 (12%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
GD +S + + G G + ++ + G++ Y V + RY +GD+V+G
Sbjct: 40 GDEISTEGQEGFLRGHGTQVVDEKLVATVCGVVERVNKLIY-VRTLNSRYNAEQGDVVVG 98
Query: 63 VVTSRVGDNYRVDIGSHDPA--VLSYLAFEGATKKNPPKVE---------TGDVVAGKLL 111
V G +RVD+ S + +LS + G ++ + G++++ ++
Sbjct: 99 RVADIAGKAWRVDLKSRQESKLLLSAVHLPGGIQRRRNAEDELNMRSFFREGELISAEVQ 158
Query: 112 TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
+ + D V + +R ++ G L G L+ +L ++ L+ L +
Sbjct: 159 SVHADGS---VALHTRSAKY--GKLTHGQLVEVPPNLIKR-QKQHFHTLEALG------V 206
Query: 172 ELSIGMNGKIWI 183
EL IG NG +W+
Sbjct: 207 ELIIGCNGLVWV 218
>gi|410460890|ref|ZP_11314543.1| recombination helicase AddA [Bacillus azotoformans LMG 9581]
gi|409926095|gb|EKN63291.1| recombination helicase AddA [Bacillus azotoformans LMG 9581]
Length = 1246
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKC--- 157
E DVV + +K +E +V V G++F M L LLH + KL+NPK
Sbjct: 799 EQEDVVRMMTIHKSKGLEFPIVFVAGLGRQFNMQDLRKKVLLHKELGFGSKLVNPKLRIT 858
Query: 158 -PLLKQLAKRSRQKMEL 173
P L LA + R +MEL
Sbjct: 859 YPTLPLLAMKRRLQMEL 875
>gi|308804591|ref|XP_003079608.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4 (ISS)
[Ostreococcus tauri]
gi|116058063|emb|CAL54266.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4 (ISS)
[Ostreococcus tauri]
Length = 261
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 16/162 (9%)
Query: 45 VDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV--LSYLAFEGATKKNPPKVET 102
V ++ RYVP GD+V+G VT+ G + +DI + V LS + G ++ V
Sbjct: 8 VRALKSRYVPETGDVVLGKVTNVSGKRWILDINARQNGVLQLSAVHLPGNVQRRRNDV-- 65
Query: 103 GDVVAGKLLTANKDM-ESEMVCVDSRG------KEFIMGILNDGYLLHTSISLCRKLLNP 155
D + + L A D+ SE+ V S G + G L G L+ + +L R+L
Sbjct: 66 -DELNMRTLYAEGDIVSSEVQSVYSDGAAALHTRSLKYGRLKRGQLVRVTANLVRRLPQH 124
Query: 156 KCPL----LKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVR 193
L +E+ +G NG IW+ S + R
Sbjct: 125 FHRLEMDEFHDSVATGTHDVEILLGCNGYIWVGAPSAATAPR 166
>gi|219363297|ref|NP_001136723.1| hypothetical protein [Zea mays]
gi|194696768|gb|ACF82468.1| unknown [Zea mays]
gi|414584979|tpg|DAA35550.1| TPA: hypothetical protein ZEAMMB73_729707 [Zea mays]
Length = 209
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
DT+ +N E ++ G G + ++ + G++ Y V ++ RY P GD+++G
Sbjct: 40 DTIPVNQEDNILKGHGTSDQDGEVVATLCGVVERVNKLVY-VRTLRARYKPEVGDIIVGR 98
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V +R++I AVL ++ P ++ +L + E++++C
Sbjct: 99 VIEIAPKRWRLEINFSQDAVLML-----SSMNLPDGIQRRRTAVDELNMRSIFEENDVIC 153
Query: 124 VDSRG 128
+ RG
Sbjct: 154 AEVRG 158
>gi|389582211|dbj|GAB64766.1| exosome complex exonuclease rrp4 [Plasmodium cynomolgi strain B]
Length = 328
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 6 LSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVT 65
LS + R + G GL E +G + + Y V+ ++ +Y GDL++G +
Sbjct: 58 LSKKDKGRFLKGSGLYEEDEKYFACIAGTVNYINKLVY-VEPLKGKYTGAVGDLLVGKIK 116
Query: 66 SRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
D + V+IGS+ A+LS + ++ + + N + E
Sbjct: 117 DITNDKWVVEIGSYCKALLSISQTNISLFCQRIRLYNDVINMINIYKPNDIIACE----- 171
Query: 126 SRGKEFIMGILNDG-YLLHTSISLCRKLLNPKCPLLKQLAKRSRQK--------MELSIG 176
+ IL DG +LHT ++ KL N + Q ++++K +++ +G
Sbjct: 172 ------VQRILADGCIILHTRSTIYGKLSNGILITVPQTLIQNQKKHIFVFPCNVQVILG 225
Query: 177 MNGKIWI 183
MNG IW+
Sbjct: 226 MNGFIWV 232
>gi|213404002|ref|XP_002172773.1| exosome complex exonuclease RRP4 [Schizosaccharomyces japonicus
yFS275]
gi|212000820|gb|EEB06480.1| exosome complex exonuclease RRP4 [Schizosaccharomyces japonicus
yFS275]
Length = 326
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 8 LNAEPRLILGPGLRRESSAILVSQSGILRHA------KPFTYYVDYIQRRYVPTRGDLVI 61
+ +P+ + G G + + I S +GI++ KPF + RYVP GDLV+
Sbjct: 60 ITEDPQFMRGHGTYADGARICASVAGIVQRVNKLISVKPF-------KSRYVPEIGDLVV 112
Query: 62 GVVTSRVGDNYRVDIGSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
G +T ++VDIG A+ LS + G ++ K ET ++ N + +
Sbjct: 113 GRITEVQPKRWKVDIGVKLDAILMLSSINLPGGVQRR--KSETDELQMRTFFQENDLLVA 170
Query: 120 EM 121
E+
Sbjct: 171 EV 172
>gi|18977941|ref|NP_579298.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus DSM
3638]
gi|397652062|ref|YP_006492643.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus COM1]
gi|29336821|sp|Q8U0L8.1|ECR1_PYRFU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|18893711|gb|AAL81693.1| hypothetical protein PF1569 [Pyrococcus furiosus DSM 3638]
gi|393189653|gb|AFN04351.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus COM1]
Length = 264
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G +E S I + G++ K T V ++ Y+P GD V+G + ++ VDI
Sbjct: 26 GRGTFKEGSRIYSTVIGLV-DIKGNTIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDI 84
Query: 77 GSHDPAVLSYLAFEGAT----KKNPPK-VETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
GS A L + + + K + GD++ K+ N E + + ++G F
Sbjct: 85 GSPYSATLKIQDYTDEKIDLLRTDLRKFFDIGDIIYAKVKGIN---EVNNIELTTKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G ++ + S +++ ++ + K ++ + + +G NG IWI ++
Sbjct: 142 NGGPLRGGQIIKITSSKVPRVIGKGGSMINMIKKLTQSR--IIVGQNGWIWISSKN---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
E L+ E IL + H R L
Sbjct: 196 -------PELEKLAIEAILKIERESHTRGL 218
>gi|424811891|ref|ZP_18237131.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756113|gb|EGQ39696.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalinarum
sp. J07AB56]
Length = 227
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G+ + + +GI+R+ + T V RY+P GD+VIG V + ++ VD+
Sbjct: 26 GNGVYEDGEKLRSRYAGIVRY-QEGTVSVRPSNGRYIPQEGDIVIGEVKAVRYSSWMVDL 84
Query: 77 GSH-------DPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGK 129
S D AV Y+ + + + GD + K+ + ++ + + D R +
Sbjct: 85 NSPYEGMMKVDGAVDEYIDLD--EDELTEYYDVGDAIVVKVSSVSEGFDVNLTMDDRRCR 142
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
L G + S S L+ ++++L + + M G NG++WI+
Sbjct: 143 -----TLESGRIEEISPSKVSALIGKGGNIIRELKEETDTSM--IAGQNGRVWIQ 190
>gi|407044151|gb|EKE42405.1| hypothetical protein ENU1_022440 [Entamoeba nuttalli P19]
Length = 95
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
G L G+ S+CR+++ C +L + + + E+++G+NG +W+R + + V
Sbjct: 5 FGELQGGWAFSVPQSMCRRIMGDGCCVLTCIGEYT--PFEIAVGINGMVWVRTPNVLNDV 62
Query: 193 RVGNLIMSC 201
V + I+ C
Sbjct: 63 IVESCIVQC 71
>gi|218884636|ref|YP_002429018.1| exosome complex RNA-binding protein Rrp4 [Desulfurococcus
kamchatkensis 1221n]
gi|218766252|gb|ACL11651.1| exosome complex RNA-binding protein Rrp4 [Desulfurococcus
kamchatkensis 1221n]
Length = 239
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLS----YLAFEGATKKNPPKVETGDVVA 107
Y P + D VIG+V S ++ +DI + A+L F T ++TGD++
Sbjct: 68 YYPRKDDTVIGIVDSIGVTSWSIDIRAPYKAILPGSDVIEGFNPITHNLRNYLDTGDLIL 127
Query: 108 GKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRS 167
K+ ++ + M+ +G +G + +G ++ S +L+ K + L+ S
Sbjct: 128 AKIAIFDRTRDP-MLTTKGKG----LGKILEGVVVEIKPSKVARLVGKKGSMYNLLS--S 180
Query: 168 RQKMELSIGMNGKIWIRCES 187
+ +++I NG +W++C+
Sbjct: 181 KSGCDITIAQNGYVWLKCKD 200
>gi|18313179|ref|NP_559846.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum aerophilum
str. IM2]
gi|29336867|sp|Q8ZVM8.1|ECR1_PYRAE RecName: Full=Probable exosome complex RNA-binding protein 1
gi|18160693|gb|AAL64028.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 235
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKN-----PPKVET 102
++ Y P +GDLVIG VT + + VD+ S PA YL A ++ P
Sbjct: 54 LEGTYKPKKGDLVIGYVTDVLATGWEVDVRSFMPA---YLPVGEALHRHVDLETTPLTTF 110
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
++ + ++ + K+ +G + G ++ + +++ + +L
Sbjct: 111 LNIGDVVVAKVKDVDLTDEYPIILTLKDEKVGKVESGTVVEITPVKVPRVIGKRGSMLNT 170
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
L + ++ +G NG+IW++C+ D V + +LI E S+ ++ L + I
Sbjct: 171 LMELG---CDIVVGQNGRIWVKCKDPRDEVFLASLIRKIEAESH--VMGLTDRI 219
>gi|329766297|ref|ZP_08257844.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393796025|ref|ZP_10379389.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137199|gb|EGG41488.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 226
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA--------FEGATKKNPPKVET 102
+Y+P DLVIG V S ++ +DI S + +L F + K+++
Sbjct: 55 KYIPKIDDLVIGKVISHTSLSWELDINS---CYVGFLPAQDVFGRDFSAHADELTSKLKS 111
Query: 103 GDVVAGKLLTANKDMESE-MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD+VA ++ AN D + +V + R +G ++ G L+ S S +L+ + +++
Sbjct: 112 GDLVAARI--ANFDRTRDPLVTIADRD----LGKIDSGTLVKISPSKVPRLIGKRGTMIQ 165
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCES 187
+ + ++IG NG I + CE+
Sbjct: 166 MIEMAT--GAAVTIGQNGWIVVSCET 189
>gi|332157780|ref|YP_004423059.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. NA2]
gi|331033243|gb|AEC51055.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. NA2]
Length = 268
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE S I + G++ K T V ++ Y+P GD VIG V ++ VDI
Sbjct: 26 GRGTFREGSRIYSTVIGLV-DIKGNTIRVIPLEGPYIPEVGDNVIGKVVDVKFSSWVVDI 84
Query: 77 GSHDPAVLSYLAFEGAT----KKNPPK-VETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
G+ PA L F + + K + GD++ K+ E + + ++G F
Sbjct: 85 GAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIYAKVKAIT---EVNNIDLTTKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G ++ + S +++ ++ + K + + + +G NG IWI ++
Sbjct: 142 NGGPLRGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR--IIVGQNGWIWINGKN---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
E L+ E IL + H + L
Sbjct: 196 -------EYLEKLAIEAILKIDRESHTKGL 218
>gi|424814252|ref|ZP_18239430.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalina sp.
J07AB43]
gi|339757868|gb|EGQ43125.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalina sp.
J07AB43]
Length = 231
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDI-----GSHDPAVLSYLAFEGATKKNPPKVETGDV 105
RY+P GD+VI VT + +D+ G+ D + S + + GD
Sbjct: 59 RYIPEEGDVVIAEVTRVSYSRWNLDMDSPYEGTLDISEASDQYVDLDEDDLTDFYDVGDA 118
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
V K+ + ++ M+ ++ +D R ++ L +G +++ S +++ + +++Q+ +
Sbjct: 119 VVAKVTSVSESMDVDLTMLDDRCRK-----LEEGRIINISPHKVPRVIGRQGTMVQQINE 173
Query: 166 RSRQKMELSIGMNGKIWIRCES 187
++ + +G NG +WI E+
Sbjct: 174 KT--NCHVIVGQNGLVWINGEN 193
>gi|323456334|gb|EGB12201.1| hypothetical protein AURANDRAFT_4556, partial [Aureococcus
anophagefferens]
Length = 170
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 26/149 (17%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKN-PPKVET-GDV 105
++ RY GDLV+G V ++VD+G+ + L+ LA T N ++ T D
Sbjct: 35 VRGRYGGEVGDLVVGTVVEIAHKAWKVDVGA---SRLATLALSSVTLPNDAQRIRTHADA 91
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPK-----CPL 159
+A + L A E ++VC + +M + DG + LHT + KL N + L
Sbjct: 92 LAMRALYA----EGDVVCCE------VMAVHGDGSVHLHTRSNRYGKLGNGRLVAVNSHL 141
Query: 160 LKQLAKR-----SRQKMELSIGMNGKIWI 183
+++L + +EL++G NG +W+
Sbjct: 142 VRRLPRHFVALPRDVDVELAVGNNGVVWV 170
>gi|407464318|ref|YP_006775200.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
sp. AR2]
gi|407047506|gb|AFS82258.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
sp. AR2]
Length = 227
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA--------FEGATKKNPPKVET 102
+Y+P DLVIG V S ++ +DI S + +L F + K+++
Sbjct: 55 KYIPKINDLVIGKVISHSSLSWELDINS---CYVGFLPAQDVFGRDFSAHADELTSKLKS 111
Query: 103 GDVVAGKLLTANKDMESE-MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD+VA ++ AN D + +V + R +G ++ G L+ S S +L+ + +++
Sbjct: 112 GDLVAARI--ANFDRTRDPLVTISDRD----LGKIDSGDLVKISPSKVPRLIGKRGSMIQ 165
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCES 187
+ + ++IG NG + + CE+
Sbjct: 166 MIEMATNAA--VTIGQNGWVVVSCET 189
>gi|302776644|ref|XP_002971475.1| hypothetical protein SELMODRAFT_147871 [Selaginella moellendorffii]
gi|300160607|gb|EFJ27224.1| hypothetical protein SELMODRAFT_147871 [Selaginella moellendorffii]
Length = 270
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 84/192 (43%), Gaps = 25/192 (13%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
GD + ++ + ++ G G + ++ + G + + V ++ RY GD+VIG
Sbjct: 8 GDVIQVDHQDGILRGHGTQLVDGELVATVCGTVERVNKLVF-VKPLRSRYEARVGDVVIG 66
Query: 63 VVTSRVGDNYRVDIGSHDPA--VLSYLAFEGATKKNPPKVE---------TGDVVAGKLL 111
VT ++VD+ S A +LS + G ++ + GD+++ ++
Sbjct: 67 RVTELAQKRWKVDVNSKQDAHLMLSAVNLPGGIQRRRTATDELNMRSVFVEGDLISAEVQ 126
Query: 112 TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
+A++D + + +R ++ G L G L+ L ++ L + + ++
Sbjct: 127 SASQD----SIHLHTRSLKY--GKLQMGQLVKVEPYLIKR-------LSQHFHSFGQYQV 173
Query: 172 ELSIGMNGKIWI 183
E+ G NG +WI
Sbjct: 174 EVIFGCNGYVWI 185
>gi|302765186|ref|XP_002966014.1| hypothetical protein SELMODRAFT_84338 [Selaginella moellendorffii]
gi|300166828|gb|EFJ33434.1| hypothetical protein SELMODRAFT_84338 [Selaginella moellendorffii]
Length = 271
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 84/192 (43%), Gaps = 25/192 (13%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
GD + ++ + ++ G G + ++ + G + + V ++ RY GD+VIG
Sbjct: 8 GDVIQVDHQDGILRGHGTQLVDGELVATVCGTVERVNKLVF-VKPLRSRYEARVGDVVIG 66
Query: 63 VVTSRVGDNYRVDIGSHDPA--VLSYLAFEGATKKNPPKVE---------TGDVVAGKLL 111
VT ++VD+ S A +LS + G ++ + GD+++ ++
Sbjct: 67 RVTELAQKRWKVDVNSKQDAHLMLSAVNLPGGIQRRRTATDELNMRSVFVEGDLISAEVQ 126
Query: 112 TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
+A++D + + +R ++ G L G L+ L ++ L + + ++
Sbjct: 127 SASQD----SIHLHTRSLKY--GKLQMGQLVKVEPYLIKR-------LSQHFHSFGQYQV 173
Query: 172 ELSIGMNGKIWI 183
E+ G NG +WI
Sbjct: 174 EVIFGCNGYVWI 185
>gi|430750584|ref|YP_007213492.1| recombination helicase AddA [Thermobacillus composti KWC4]
gi|430734549|gb|AGA58494.1| recombination helicase AddA [Thermobacillus composti KWC4]
Length = 1283
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKC--- 157
E DVV + A+K +E +V V GK F LN +L+H + ++++P
Sbjct: 826 EQDDVVRIMSIHASKGLEFPVVFVAGLGKRFNFTDLNGSFLMHKELGFGPRMVDPDLRVS 885
Query: 158 -PLLKQLAKRSRQKMEL 173
P L QLA R R K E+
Sbjct: 886 FPSLPQLAIRRRLKAEM 902
>gi|294495470|ref|YP_003541963.1| ribosomal RNA-processing protein RRP4 [Methanohalophilus mahii DSM
5219]
gi|292666469|gb|ADE36318.1| ribosomal RNA-processing protein RRP4 [Methanohalophilus mahii DSM
5219]
Length = 255
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKN--PPKVETGDVVAG 108
+Y+P+ D VIG V N+ DIGS +L + + +++ D
Sbjct: 52 KYIPSPKDYVIGYVIEVTSSNWIFDIGSPYDGLLHVSEYPKRVDSSMMRKEIDIWDCAIL 111
Query: 109 KLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSR 168
++ N M+ E+ D RG + L++G ++ S + +++ ++ L K S
Sbjct: 112 RIKDVNTSMKVELSMKD-RG----LRRLDEGRIIDVSTTKVPRIIGHNGSMVSMLKKES- 165
Query: 169 QKMELSIGMNGKIWIR 184
++ IG NG+IW++
Sbjct: 166 -NCDIFIGQNGRIWLK 180
>gi|429862582|gb|ELA37224.1| exosome complex exonuclease rrp4 [Colletotrichum gloeosporioides
Nara gc5]
Length = 343
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 17/148 (11%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE---GATKKNPPKVE--- 101
++ RY P GDLV+G + +RVD+GS A+L A G +K E
Sbjct: 102 LRARYTPEIGDLVVGRIVEVQAKRWRVDVGSSQLAILQISAINLPGGILRKRTDTDELQI 161
Query: 102 -----TGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDG-YLLHTSISLCRKLLNP 155
GD+V ++ ++D + + + G L +G + T ++
Sbjct: 162 RSFFAEGDLVVAEVQQLHQDGAASLHT-----RSLKYGKLRNGVFCAVTGTGGGGGVVRA 216
Query: 156 KCPLLKQLAKRSRQKMELSIGMNGKIWI 183
K A R K+ L++G+NG IWI
Sbjct: 217 KRQQWVMDAARGAAKVHLTLGVNGFIWI 244
>gi|221052678|ref|XP_002261062.1| exosome complex exonuclease rrp4 [Plasmodium knowlesi strain H]
gi|194247066|emb|CAQ38250.1| exosome complex exonuclease rrp4, putative [Plasmodium knowlesi
strain H]
Length = 328
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 6 LSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVT 65
LS + R + G GL E G + + Y V+ ++ +Y GDL++G +
Sbjct: 58 LSKKDKGRFLKGSGLYEEDEKYFACIVGTVNYINKLVY-VEPLRGKYTGAVGDLLVGKIK 116
Query: 66 SRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
D + V+IGS+ A+LS + ++ + + N + E
Sbjct: 117 DISNDKWVVEIGSYCKALLSISQTNISLFCQRIRLYNDVINMINIYKPNDIIACE----- 171
Query: 126 SRGKEFIMGILNDG-YLLHTSISLCRKLLNPKCPLLKQLAKRSRQK--------MELSIG 176
+ IL DG +LHT S+ KL N + Q ++++K +++ +G
Sbjct: 172 ------VQRILPDGCIILHTRSSIYGKLSNGILITVPQTLIQNQKKHIFVFPCNVQIILG 225
Query: 177 MNGKIWI 183
MNG IWI
Sbjct: 226 MNGFIWI 232
>gi|389740932|gb|EIM82122.1| hypothetical protein STEHIDRAFT_65970 [Stereum hirsutum FP-91666
SS1]
Length = 286
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G + ++ S +G + V ++ RY P GDLV+G +T +RVD
Sbjct: 32 GHGTYVDDDDVIASVAGTVERVNKLVT-VRALRTRYNPEVGDLVVGRITEVQPRRWRVDT 90
Query: 77 GSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRG------ 128
S A+ LS + G ++ K+E+ ++ + +E+ S G
Sbjct: 91 NSRQDAILMLSSVNLPGGVQRR--KLESDELQMRNFFEEGDLLVAEVQAFFSDGAMSLHT 148
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
+ G L +G L+ L R+L + PL ++L +G+NG IW+
Sbjct: 149 RSLKYGKLRNGQLVTVPPILVRRLKSHFMPL--------PCGVDLILGLNGYIWV 195
>gi|242399327|ref|YP_002994751.1| Probable exosome complex RNA-binding protein 1 [Thermococcus
sibiricus MM 739]
gi|242265720|gb|ACS90402.1| Probable exosome complex RNA-binding protein 1 [Thermococcus
sibiricus MM 739]
Length = 251
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G +E + + S G++R + T V ++ Y+P GD VIG + N+ VDI
Sbjct: 26 GRGTFKEGNRLYSSVVGLVRVSND-TVSVVPLEGPYIPEVGDTVIGKIVDVKFSNWIVDI 84
Query: 77 GSHDPAVLSYL-AFEG---ATKKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
G+ A L EG K + K+ + GD++ K+ N+ + +++ ++G F
Sbjct: 85 GAPYQAGLRVQDVIEGRVDVLKTDLRKIFDIGDIIYAKIKAYNEINQIDLI---TKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G L+ + S +L+ ++ + ++ + +G NG +W+
Sbjct: 142 NGGPLKGGQLVKITPSKVPRLIGKGGSMINMI--KNLTGTRIIVGQNGWVWVSGRK---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
E L+ E IL + H + L
Sbjct: 196 -------EELEKLAIEAILKVNRESHTQGL 218
>gi|237833725|ref|XP_002366160.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211963824|gb|EEA99019.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 353
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 26/203 (12%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G + I + GIL Y + ++ RY + GD+V+G VT + + VD+
Sbjct: 99 GHGTYEKGGKIFAAVCGILEKVNKLVY-IRPLRSRYQGSVGDVVVGRVTDILNGKWLVDV 157
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGIL 136
S A L+ A + + L N + +++C + + +
Sbjct: 158 NSGQAACLALAAISLPEHRRRLDEDM-------LEMQNFFVVGDVICCE------VQRVR 204
Query: 137 NDGY-LLHTSISLCRKLLNPKCPLL--KQLAKRSRQKMELS------IGMNGKIWIRC-- 185
DG LLHT + +L+N + +Q+ ++S ++LS +G+NG IWI
Sbjct: 205 ADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQLSCGVQVVLGLNGYIWISLPM 264
Query: 186 -ESFSDTVRVGNLIMSCELLSYE 207
S DT+ ++ + E +S E
Sbjct: 265 KTSAKDTMNYAHVQTTHEKVSKE 287
>gi|288560610|ref|YP_003424096.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
ruminantium M1]
gi|288543320|gb|ADC47204.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
ruminantium M1]
Length = 491
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVV 106
++ +Y+P +GD+VIG + + VDI S +L G KK +V + GDV+
Sbjct: 59 LKSKYIPKKGDVVIGKIDDVRFSMWGVDINSPYSGILPASEVFGREKKELSRVFDIGDVL 118
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
+++ ++ ++ + + RG MG G ++ + + +L+ K ++ + +
Sbjct: 119 FLRIVDVDE-VKKVKLGLKGRG----MGKFRGGVIVDIAPTKVPRLIGKKGSMINMIKDK 173
Query: 167 SRQKMELSIGMNGKIWIR 184
+ K + +G NG +W++
Sbjct: 174 TGCK--IVVGQNGLVWVK 189
>gi|19113896|ref|NP_592984.1| exosome subunit Rrp4 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1175376|sp|Q09704.1|RRP4_SCHPO RecName: Full=Exosome complex component rrp4; AltName:
Full=Ribosomal RNA-processing protein 4
gi|1052797|emb|CAA90501.1| exosome subunit Rrp4 (predicted) [Schizosaccharomyces pombe]
Length = 329
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
+P+ + G G E I S +G ++ V ++ +YVP GDL+IG +
Sbjct: 67 DPQFMRGHGTYFEDGGIYASVAGSVQRVNKLIS-VKPLRSKYVPEIGDLIIGKIAEVQPK 125
Query: 71 NYRVDIGSHDPAVL 84
++VDIG+ AVL
Sbjct: 126 RWKVDIGAKQNAVL 139
>gi|357124713|ref|XP_003564042.1| PREDICTED: exosome complex component rrp4-like [Brachypodium
distachyon]
Length = 319
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 22/190 (11%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
D + +N E ++ G G ++ + G++ Y V ++ RY P GD+++G
Sbjct: 40 DNIPVNQEDNILKGHGTSDHDGEVVATLCGVVERVNKLVY-VRTLRARYKPEVGDIIVGR 98
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V +R++I AVL ++ P ++ +L + E+++VC
Sbjct: 99 VIEIAPKRWRLEINFSQDAVLML-----SSMNLPDGIQRRRTAVDELNMRSIFEENDVVC 153
Query: 124 VDSRGKEFIMGILNDGYLLHTSIS-----LCR-KLLNPKCPLLKQLAKR----SRQKMEL 173
+ RG + +DG L + S L R +LL L+K+ + + ++L
Sbjct: 154 AEVRGFQ------HDGSLHLQARSQKYGKLQRGQLLTVPAYLVKRRKQHFHHLEQYDVDL 207
Query: 174 SIGMNGKIWI 183
+G NG +W+
Sbjct: 208 ILGCNGFVWV 217
>gi|412989089|emb|CCO15680.1| exosome complex exonuclease RRP4 [Bathycoccus prasinos]
Length = 319
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 25/189 (13%)
Query: 8 LNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
+NA + G G + + + SG++ V ++ +Y P GD+V+G +
Sbjct: 44 VNASEGFLKGHGTQVSEGELRATVSGVVERVNKLVS-VKPMKAKYTPETGDVVVGRINMI 102
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
++VDI S AVL + + + + E ++ +L + +E
Sbjct: 103 SSKRWKVDINSRQEAVLQLSSVNLPSGQQRRRNEADELNMSRLFDTADVISAE------- 155
Query: 128 GKEFIMGILNDGYL-LHTSIS----LCRKLLNPKCP-LLKQLAKRSRQK-------MELS 174
+ + DG LH + L R +L CP L+K+L + +E+
Sbjct: 156 ----VQSLFQDGAANLHARSTKYGRLSRGVLVEVCPSLVKRLPQHFHALEVAPGVFIEVL 211
Query: 175 IGMNGKIWI 183
IG NG IW+
Sbjct: 212 IGCNGFIWV 220
>gi|221508148|gb|EEE33735.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 356
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 26/203 (12%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G + I + GIL Y + ++ RY + GD+V+G VT + + VD+
Sbjct: 102 GHGTYEKGGKIFAAVCGILEKVNKLVY-IRPLRSRYQGSVGDVVVGRVTDILNGKWLVDV 160
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGIL 136
S A L+ A + + L N + +++C + + +
Sbjct: 161 NSGQAACLALAAISLPEHRRRLDEDM-------LEMQNFFVVGDVICCE------VQRVR 207
Query: 137 NDGY-LLHTSISLCRKLLNPKCPLL--KQLAKRSRQKMELS------IGMNGKIWIRC-- 185
DG LLHT + +L+N + +Q+ ++S ++LS +G+NG IWI
Sbjct: 208 ADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQLSCGVQVVLGLNGYIWISLPM 267
Query: 186 -ESFSDTVRVGNLIMSCELLSYE 207
S DT+ ++ + E +S E
Sbjct: 268 KTSAKDTMNYAHVQTTHEKVSKE 290
>gi|221486367|gb|EEE24628.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 353
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 26/203 (12%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G + I + GIL Y + ++ RY + GD+V+G VT + + VD+
Sbjct: 99 GHGTYEKGGKIFAAVCGILEKVNKLVY-IRPLRSRYQGSVGDVVVGRVTDILNGKWLVDV 157
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGIL 136
S A L+ A + + L N + +++C + + +
Sbjct: 158 NSGQAACLALAAISLPEHRRRLDEDM-------LEMQNFFVVGDVICCE------VQRVR 204
Query: 137 NDGY-LLHTSISLCRKLLNPKCPLL--KQLAKRSRQKMELS------IGMNGKIWIRC-- 185
DG LLHT + +L+N + +Q+ ++S ++LS +G+NG IWI
Sbjct: 205 ADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQLSCGVQVVLGLNGYIWISLPM 264
Query: 186 -ESFSDTVRVGNLIMSCELLSYE 207
S DT+ ++ + E +S E
Sbjct: 265 KTSAKDTMNYAHVQTTHEKVSKE 287
>gi|14591334|ref|NP_143412.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus horikoshii
OT3]
gi|29336583|sp|O59221.1|ECR1_PYRHO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|3257980|dbj|BAA30663.1| 265aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 265
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE S I + G++ K T V ++ Y+P GD VIG + ++ VDI
Sbjct: 26 GRGTFREGSRIYSTVIGLV-DIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDI 84
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVET--------GDVVAGKLLTANKDMESEMVCVDSRG 128
G+ L+ L + T + + T GD++ GK+ E + + ++G
Sbjct: 85 GA---PYLANLKIQDFTDEKIDLLRTDLRKFFDIGDIIYGKVKAIT---EVNNIDLTTKG 138
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESF 188
F G L G ++ + S +++ ++ + K + + + +G NG IW+ ++
Sbjct: 139 MPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR--IIVGQNGWIWVNGKN- 195
Query: 189 SDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+ E L+ E IL + H + L
Sbjct: 196 ----------EALEKLAIEAILKIDRESHTKGL 218
>gi|294462385|gb|ADE76741.1| unknown [Picea sitchensis]
Length = 328
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
DT+ E ++ G G + ++ + G++ V ++ RY P GD+V+G
Sbjct: 40 DTIPGYQEEGILKGHGTADLNGEVVATLCGVVERVNKLVL-VRTLRARYKPENGDIVVGR 98
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V + VDI + A+L ++ P ++ +L + E++++C
Sbjct: 99 VFEVASKRWLVDINFNQAALLML-----SSMNLPDGIQRRRTAVDELSMRSMFEENDVIC 153
Query: 124 VDSRG-----------KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
+ RG + G L +G L+ TS L ++ L+Q ++
Sbjct: 154 AEVRGFQHDGSLHLQARSLKYGKLENGQLITTSAYLVKR-RKQHFHHLEQYG------VD 206
Query: 173 LSIGMNGKIWI 183
+ +G+NG IW+
Sbjct: 207 MILGLNGYIWV 217
>gi|71030016|ref|XP_764650.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351606|gb|EAN32367.1| hypothetical protein, conserved [Theileria parva]
Length = 263
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 24/194 (12%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
GD +S ++ L+ G G + S G ++H Y V+ +YV GD+VIG
Sbjct: 10 GDVVSSDS-SFLLQGHGTYVSDKQLRASYLGSVKHVNQLVY-VEPFGGKYVGQIGDIVIG 67
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMV 122
VV S G+ + +D+ + + A LS L N K++ L N + E+
Sbjct: 68 VVDSIQGNKWFLDVNAVELAQLSILQVNTEELANRRKIDEDIYEMSNLFNVNDIVSCEIQ 127
Query: 123 CVDSRGKEFIM------GILNDGYLLHTSISLC----RKLLNPKCPLLKQLAKRSRQKME 172
+ G + G L +G L+ +L + + + +C +
Sbjct: 128 RISPTGTIMLQTRTSKYGKLENGILVKIKPNLVIRKGKHIYDMECGV------------R 175
Query: 173 LSIGMNGKIWIRCE 186
+ +G NG IW+ +
Sbjct: 176 IILGCNGYIWLTSQ 189
>gi|392957950|ref|ZP_10323469.1| recombination helicase AddA [Bacillus macauensis ZFHKF-1]
gi|391875935|gb|EIT84536.1| recombination helicase AddA [Bacillus macauensis ZFHKF-1]
Length = 1262
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKC--- 157
E DVV + +K +E +V V K+F L+ LLH + L K +NPK
Sbjct: 795 EQEDVVRIMTIHKSKGLEFPVVFVAGLNKKFNTQDLSQSVLLHKELGLGTKYINPKLRIS 854
Query: 158 -PLLKQLAKRSRQKMEL 173
P + QLA R KMEL
Sbjct: 855 YPTIMQLAISRRMKMEL 871
>gi|156094565|ref|XP_001613319.1| exosome complex exonuclease rrp4 [Plasmodium vivax Sal-1]
gi|148802193|gb|EDL43592.1| exosome complex exonuclease rrp4, putative [Plasmodium vivax]
Length = 345
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 6 LSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVT 65
LS + R + G GL E G + + Y V+ ++ +Y GDL++G +
Sbjct: 58 LSKKDKGRFLKGSGLYEEDEKYFACIVGTVNYINKLVY-VEPLRGKYTGAVGDLLVGKIK 116
Query: 66 SRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125
D + V+IGS+ A+LS + ++ + + N + E
Sbjct: 117 DISNDKWVVEIGSYCKALLSISQTNISVFCQRIRLYNDVINMINIYKPNDIIACE----- 171
Query: 126 SRGKEFIMGILNDG-YLLHTSISLCRKLLNPKCPLLKQLAKRSRQK--------MELSIG 176
+ IL DG +LHT S+ KL N + Q ++++K +++ +G
Sbjct: 172 ------VQRILADGCIVLHTRSSIYGKLSNGILITVPQTLIQNQKKHIFVFPCNVQVILG 225
Query: 177 MNGKIWI 183
MNG IW+
Sbjct: 226 MNGFIWV 232
>gi|399216206|emb|CCF72894.1| unnamed protein product [Babesia microti strain RI]
Length = 260
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 20/202 (9%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
GD ++ + L+ G G+ + + S G L Y V ++ RY+ GD+V+G
Sbjct: 11 GDCVA-STSKTLLNGYGIYKHEGVLYASLMGKLEQINQLIY-VKPLKGRYMAQVGDIVVG 68
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLA-----FEGATKKNPPKVETGDVVAGKLLTA---N 114
+ VG+ + V+IGS + A LS G + N + ++ A L +
Sbjct: 69 RIDEIVGNKWMVEIGSVERAQLSIFQVNLSELSGRRRLNEDLYDMSNIFALDDLISCEVQ 128
Query: 115 KDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
+ M + R + +G L +G +L L ++ K + ++++
Sbjct: 129 RIMAEGTALLQIRSDK--LGKLKNGIVLTVQPYLIKR--QAKHIYIFDFG------VKIT 178
Query: 175 IGMNGKIWIRCESFSDTVRVGN 196
+G NGKIW+ +D G+
Sbjct: 179 LGCNGKIWLSSSDTNDAPSYGD 200
>gi|70923226|ref|XP_734654.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56507596|emb|CAH75679.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 106
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 40 PFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSH 79
P+ Y + +Y+P GDLVIG+V S+ D Y++DI S+
Sbjct: 54 PYKYDIMNTSHKYIPKIGDLVIGIVKSKKLDYYQMDINSN 93
>gi|297527573|ref|YP_003669597.1| K-like, type 1, subgroup [Staphylothermus hellenicus DSM 12710]
gi|297256489|gb|ADI32698.1| K-like, type 1, subgroup [Staphylothermus hellenicus DSM 12710]
Length = 240
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 26/176 (14%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNP------PKVETGDV 105
Y P + DLVIG+VT N+ +DI + A+L+ E NP ++ G+
Sbjct: 69 YFPKKDDLVIGLVTGVGITNWIIDIRAPYKAILN--GSEVIEGFNPIIHNLRDYLDIGEY 126
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
+ K+ ++ + ++ + +G +G + +G ++ S +++ K +L L
Sbjct: 127 ILAKISVFDRTRDP-ILTIKGKG----LGKITEGTVIEVKPSRVPRIIGKKGSMLNLLT- 180
Query: 166 RSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
S+ + + NG IW RC D R+ LI + +++ + +H+R L
Sbjct: 181 -SKTGCNIVVAQNGMIWARC---PDNHRLNILIQALKIIE--------DKVHMRGL 224
>gi|317128676|ref|YP_004094958.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522]
gi|315473624|gb|ADU30227.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522]
Length = 1242
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKC--- 157
E DVV + +K +E +V V K+F M L YLLH + K ++PK
Sbjct: 786 EQEDVVRIMTIHKSKGLEFPIVFVAGANKKFNMQDLRGSYLLHKDLGFGSKYIDPKLRVA 845
Query: 158 -PLLKQLAKRSRQKME 172
P L QLA + R +E
Sbjct: 846 YPSLPQLAIKKRMHLE 861
>gi|294460073|gb|ADE75619.1| unknown [Picea sitchensis]
Length = 328
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
DT+ E ++ G G + ++ + G++ V ++ RY P GD+V+G
Sbjct: 40 DTIPGYQEEGILKGHGTADLNGEVVATLCGVVERVNKLVL-VRTLRVRYKPENGDIVVGR 98
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V + VDI + A+L ++ P ++ +L + E++++C
Sbjct: 99 VFEVASKRWLVDINFNQAALLML-----SSMNLPDGIQRRRTAVDELSMRSMFEENDVIC 153
Query: 124 VDSRG-----------KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
+ RG + G L +G L+ TS L ++ L+Q ++
Sbjct: 154 AEVRGFQHDGSLHLQARSLKYGKLENGQLITTSAYLVKR-RKQHFHHLEQYG------VD 206
Query: 173 LSIGMNGKIWI 183
+ +G+NG IW+
Sbjct: 207 MILGLNGYIWV 217
>gi|167389163|ref|XP_001738843.1| rrp4 [Entamoeba dispar SAW760]
gi|165897732|gb|EDR24810.1| rrp4, putative [Entamoeba dispar SAW760]
Length = 263
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 15/191 (7%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
E I G G+R E + + G + V+ I+ RY GD+V+G + S
Sbjct: 21 EEGCIPGNGIRIEDNEFISCVHGTVERINKLVC-VNPIRSRYCGNVGDVVVGRIVSVGVG 79
Query: 71 NYRVDIGSHDPAVL--SYLAFEGATKKNPPKVETGDVVA----GKLLTANKDMESEMVCV 124
++VDI + +L S + ++ +++ ++ +L+ A + C+
Sbjct: 80 FWKVDINGKNNGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNELICAEVQSMNGQSCI 139
Query: 125 DSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
+ G LN+G L+ SL ++ K + ++ GMNG I+I
Sbjct: 140 QLHTRNERYGKLNEGILIQVHPSLIKR--------CKSHITLFKNGIKFICGMNGYIFIS 191
Query: 185 CESFSDTVRVG 195
+ SD VG
Sbjct: 192 LNNESDYSNVG 202
>gi|429963289|gb|ELA42833.1| hypothetical protein VICG_00148 [Vittaforma corneae ATCC 50505]
Length = 224
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 24/212 (11%)
Query: 15 ILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRV 74
I G G + I + G + RY P GD+V+G V ++V
Sbjct: 18 IKGHGTEQIGDKIYSNYFGTVNQINKLITIAPVFSVRYTPEVGDVVVGRVIQIYSKKWKV 77
Query: 75 DIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI-- 132
D LS A K E ++ K N + E+ V+ G +
Sbjct: 78 DTNCRSDTTLSLGAINLPGVMQRRKSEEDEINMSKYFDINDVIVCEVQKVNKNGSAALHT 137
Query: 133 ----MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI----- 183
G L++G L++ S L L+ K + ++ +E++ G NG IWI
Sbjct: 138 RSDKYGRLSNGVLINVSPDL---LVATKSRFI------AKGGVEITSGCNGHIWISSKND 188
Query: 184 RCESFSDTVRVGNLIMSC----ELLSYEEILN 211
ESF ++ ++I E + E I+N
Sbjct: 189 SSESFQQIAQIRSIIECAYDQNEAVDLEAIIN 220
>gi|71021183|ref|XP_760822.1| hypothetical protein UM04675.1 [Ustilago maydis 521]
gi|46100196|gb|EAK85429.1| hypothetical protein UM04675.1 [Ustilago maydis 521]
Length = 470
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSH-DPAV-LSYLAFEGATKKNPPKVETGDVVAG 108
RY GDLVIG +T ++VDI + D A+ LS + G ++ K+E+ ++
Sbjct: 209 RYAAEVGDLVIGRITEVGPKRWKVDINAKTDSALQLSSINLPGGIQRR--KIESDELQMR 266
Query: 109 KLLTANKDM--ESEMVCVDSRG----KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
N + E +M+ D+ + G L +G L+ S +L ++L K +
Sbjct: 267 SFFQENDLLVAEVQMMFQDNSSALHTRSLRYGKLRNGILVTVSPNLIQRL---KSHFVHL 323
Query: 163 LAKRSRQKMELSIGMNGKIWI 183
+ ++L IG+NG IWI
Sbjct: 324 KHDELQLDVDLVIGLNGYIWI 344
>gi|388580789|gb|EIM21101.1| hypothetical protein WALSEDRAFT_19193 [Wallemia sebi CBS 633.66]
Length = 302
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G I+ SG++ V ++ +Y+P GDLVIG + ++V+I
Sbjct: 34 GHGTYVNDGNIISQMSGVVERVNKLVS-VRPLKHKYLPQVGDLVIGRIVEVQAKRWKVNI 92
Query: 77 GSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMG 134
+ AV LS + G ++ K+E+ ++ T +CV +
Sbjct: 93 NAASDAVLMLSSINLPGGVQRR--KLESDELQMRNFFTEGD------LCVAE-----VQS 139
Query: 135 ILNDGYL-LHTSISLCRKLLNPKCPLLK-QLAKRSRQ-------KMELSIGMNGKIWI 183
+DG + LHT KL N ++ L +R + ++L IG+NG+IW+
Sbjct: 140 FFHDGSVSLHTRSLKYGKLRNGTLATVQPNLMRRLKSHFYTLPVNVDLIIGLNGRIWV 197
>gi|167044509|gb|ABZ09184.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG6J21]
Length = 228
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAF-EGA---TKKNPPKVETGDVV 106
Y+P DLVIG + S G+++ DI S + +L F G+ T + +++ GD++
Sbjct: 59 YMPKIDDLVIGTIQSIFGNSWFADINSCYQGMLLGQDVFGRGSYPTTSEMKERLDKGDII 118
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
++ +++ E + D +G ++ G L+ S + +L+ +++ +
Sbjct: 119 FARIANSDRQREPLISIADKN-----LGKIDSGELIKISPTKIPRLIGKHGSMIQTI--E 171
Query: 167 SRQKMELSIGMNGKIWIRCE 186
+ +++G NG I + C+
Sbjct: 172 ASTNATITVGQNGFIVVSCD 191
>gi|300175432|emb|CBK20743.2| unnamed protein product [Blastocystis hominis]
Length = 189
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
E + G G+ + ++ S G++ V ++ RY+P GD+V+ V VG
Sbjct: 2 ETHFLRGHGVYVKDGKMIASVCGVVERVNKLIS-VRSLKSRYIPKIGDVVVARVLGIVGS 60
Query: 71 NYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKE 130
++ +DI S+ +VLS + ++ + + + + N + +E+ ++ +G+
Sbjct: 61 SWDMDIASYQNSVLSINSILLPGGEHRRRNDADVLQMRSIFVPNDIISAEVQQINRQGES 120
Query: 131 FI------MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQ---KMELSIGMNGKI 181
++ G L+ G L+ C L+K+L + + IG NG I
Sbjct: 121 YLHTRSPKYGKLSSGVLVSVP-----------CVLIKRLNQHFVNLPCGVGCIIGNNGYI 169
Query: 182 WI 183
W+
Sbjct: 170 WV 171
>gi|71026825|ref|XP_763056.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350009|gb|EAN30773.1| hypothetical protein TP03_0037 [Theileria parva]
Length = 143
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 88 AFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV---DSRG---KEFIMGILNDGYL 141
F G TKK P + GDVV + D E+ CV D++ E G L++G+L
Sbjct: 5 GFRGTTKKYKPNLTIGDVVFC-YVYGMYDGLIELSCVTMDDNKNWSTNETYFGPLSNGFL 63
Query: 142 LH----------TSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
++++ +L N + +L+ L K E+ +G NG++WI S
Sbjct: 64 TQLPLQHVQSYVNTVNIMFRLYNEELEVLRGL------KYEIVLGFNGRVWIGNTSNELK 117
Query: 192 VRVGNLIMSCELLSYEEILNLCESI 216
+++ I L+ +++ L + I
Sbjct: 118 LKISRFIKLSHNLNQQQLKQLFKHI 142
>gi|429327206|gb|AFZ78966.1| hypothetical protein BEWA_018090 [Babesia equi]
Length = 271
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G+ E++ + S G +R Y V+ + RY+ GD+++G V G+ + +++
Sbjct: 31 GHGIYTENNVLKASYLGKIRRVNQLIY-VEPLNGRYMAQVGDIIVGTVDEISGNKWLLEV 89
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVE 101
GS + A LS N KV+
Sbjct: 90 GSPERAQLSIFQVNSEDLANRRKVD 114
>gi|390960834|ref|YP_006424668.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. CL1]
gi|390519142|gb|AFL94874.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. CL1]
Length = 256
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE + I + G++ + T V ++ Y+P GD VIG + N+ VDI
Sbjct: 26 GRGTFREGNRIYSTVVGLV-EIRGDTIRVIPLEGPYIPEVGDNVIGKIVDVRFSNWTVDI 84
Query: 77 GSHDPAVLSYL-AFE---GATKKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
G+ A L A E K + K+ + GD++ K+ N E + + ++G F
Sbjct: 85 GAPYQASLRVQDAVEERIDLAKTDLRKIFDIGDIIYAKIKAYN---EVNQIDLTTKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G ++ + S +L+ ++ + K + + + +G NG +W+ +
Sbjct: 142 KGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTR--IIVGQNGWVWVSGKK---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
E L+ E IL + H + L
Sbjct: 196 -------EELEKLAIEAILKVDRESHTQGL 218
>gi|126644486|ref|XP_001388094.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117322|gb|EAZ51422.1| hypothetical protein cgd3_780 [Cryptosporidium parvum Iowa II]
Length = 211
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 48/162 (29%)
Query: 78 SHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES---EMVCVDSRGK----- 129
SHD +L +AFEGATK+N P + G+ V ++ D+ES E+ C+ K
Sbjct: 22 SHD-GILPDMAFEGATKRNKPNLVPGNYVCSRINYV--DLESGEIELTCITPEEKKTWSN 78
Query: 130 -EFIMGILNDGYLLHTSI------------------------------SLCRKLLNPKCP 158
E +G+L + +T+I S+ + LL +
Sbjct: 79 NENYLGVLKNSNYKNTNIIEDYSKSDRSSLPGESQSCIKDGMTVTVPQSVAQILLADQSY 138
Query: 159 LLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMS 200
+L+ L+K E+ +G NG IW + + + LIMS
Sbjct: 139 VLEALSKYF--AYEICVGQNGIIWFSASNIKEML----LIMS 174
>gi|297852158|ref|XP_002893960.1| hypothetical protein ARALYDRAFT_891345 [Arabidopsis lyrata subsp.
lyrata]
gi|297339802|gb|EFH70219.1| hypothetical protein ARALYDRAFT_891345 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ D++ LN + G G + +L + G++ + Y V ++ RY P GD+V
Sbjct: 25 IVADSIPLNHKEAFFKGHGTSLINGELLTTVCGVVINVDKLVY-VRTLRARYKPEVGDIV 83
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE 120
+G V +++V++ S VL + D V ++ +D +
Sbjct: 84 VGRVIKVAQSHWKVELNSSQDGVLKL-----------SSINMHDSVQAEVGETQRDGSLQ 132
Query: 121 MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK 180
++ S G L+ G LL L ++ N ++ L ++L +G NG
Sbjct: 133 LLLAGSHK----YGKLDKGQLLKVDPYLVKR-SNLHFHFIETLG------IDLILGRNGF 181
Query: 181 IWI 183
IW+
Sbjct: 182 IWV 184
>gi|388857654|emb|CCF48803.1| related to RRP4-3`-5` exoribonuclease [Ustilago hordei]
Length = 408
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSH-DPAV-LSYLAFEGATKKNPPKVETGDVVAG 108
RY GDLVIG +T ++VDI + D A+ LS + G ++ KVE+ ++
Sbjct: 151 RYAAEVGDLVIGRITEVGPKRWKVDINAKTDSALQLSSINLPGGIQRR--KVESDELQMR 208
Query: 109 KLLTANKDM--ESEMVCVDSRG----KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
N + E +M+ D+ + G L +G L+ S +L ++L K +
Sbjct: 209 NFFQENDLLVAEVQMMFQDNSSALHTRSLRYGKLKNGLLVTASPNLIQRL---KSHFVHL 265
Query: 163 LAKRSRQKMELSIGMNGKIWI 183
++L IG+NG IWI
Sbjct: 266 KDDDLSLDVDLIIGLNGYIWI 286
>gi|403365220|gb|EJY82389.1| Rrp4-PA [Oxytricha trifallax]
Length = 309
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 20/181 (11%)
Query: 14 LILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYR 73
I G G + I S +GI+ H V ++ + P GD++IG + S +
Sbjct: 28 FIAGHGTYEQDGKIYASLAGIV-HRIDKVICVRPLKTSFKPDIGDVIIGRIVSVENKRWA 86
Query: 74 VDIGSHDPAV--LSYLAFEGATKKNPPK---------VETGDVVAGKLLTANKDMESEMV 122
VDI S+ AV L+ + G ++ + + D+++G++ + + +
Sbjct: 87 VDINSYQHAVLNLTNINLPGGLQRRRSEEDKMQMRSFFKENDIISGEV----QGISTHDG 142
Query: 123 CVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIW 182
++ + + G L +G+++ + R++ K +L+ A++ Q + + IG NG +W
Sbjct: 143 KINMQTRNLKYGKLMNGFMVKVDHNYIRRM---KSHILEFFAEQW-QPIGVIIGTNGYVW 198
Query: 183 I 183
I
Sbjct: 199 I 199
>gi|126465757|ref|YP_001040866.1| exosome complex RNA-binding protein Rrp4 [Staphylothermus marinus
F1]
gi|126014580|gb|ABN69958.1| ribosomal RNA-processing protein RRP4 [Staphylothermus marinus F1]
Length = 240
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNP------PKVETGDV 105
Y P + DLVIG++T N+ VDI + A+L+ E NP ++ G+
Sbjct: 69 YFPKKDDLVIGLITGVGITNWIVDIRAPYKAILN--GSEVIEGFNPIIHNLRDYLDIGEY 126
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
+ K+ ++ + ++ V +G +G + +G ++ S +++ K +L L
Sbjct: 127 IVAKIAVFDRTRDP-VLTVKGKG----LGKITEGTVIEVKPSRVPRIIGKKGSMLNLLT- 180
Query: 166 RSRQKMELSIGMNGKIWIRC 185
S+ + + NG +W RC
Sbjct: 181 -SKTGCNIIVAQNGMVWARC 199
>gi|430811223|emb|CCJ31317.1| unnamed protein product [Pneumocystis jirovecii]
Length = 312
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 8 LNAEPRLILGPGLR-RESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
+ +P+ + G G R+ + + S G ++ V ++ RY+P GDLVIG +
Sbjct: 52 ITNDPQFMRGHGTYVRDKNTVYASVVGTVQRVNKLIS-VKPLKSRYLPEIGDLVIGRIVK 110
Query: 67 RVGDNYRVDIGSHDPAVL 84
++VDIGS A+L
Sbjct: 111 VGNKRWKVDIGSKQDAIL 128
>gi|167044508|gb|ABZ09183.1| hypothetical protein ALOHA_HF4000APKG6J21ctg1g48 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 219
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 23/178 (12%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPP-------KVETGD 104
Y P DLVIG + S ++ VDI S+ +L+ G K P K++TGD
Sbjct: 55 YTPKTDDLVIGKIVSHNALSWEVDINSYYSGILTASDIFG--KDYSPSRDDLSLKLKTGD 112
Query: 105 VVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLA 164
++ ++ AN + ++ + +G ++ G L+ S + +L ++
Sbjct: 113 IILARI--ANVNSRDPLITITGEN----LGKIDSGELIKISPTKIPRLTGSVIQTIE--- 163
Query: 165 KRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
+ +++G NG I ++C++ + + I ++ Y+ NL E I RFL
Sbjct: 164 --ASTNATITVGQNGLIILKCDNSTGLKKSIASIKMIGMVQYDA--NLEEKIQ-RFLD 216
>gi|330795128|ref|XP_003285627.1| hypothetical protein DICPUDRAFT_76545 [Dictyostelium purpureum]
gi|325084449|gb|EGC37877.1| hypothetical protein DICPUDRAFT_76545 [Dictyostelium purpureum]
Length = 341
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 8 LNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
++ E + G G S ++ S G L V ++ RY GD+++G +T
Sbjct: 63 ISREGEYLKGHGTFHNGSNLIASVCGTLDKVDRLIS-VKALKSRYHGEVGDIIVGRITEI 121
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
++VD+ S L Y+ A P ++ A +L N +E+++V +
Sbjct: 122 SSKRWKVDVNSR----LDYILMLSAINL-PGGIQRRRTSADELQMRNFFVENDLVYAEV- 175
Query: 128 GKEFIMGILNDGYL-LHTSISLCRKLLNPK-CPLLKQLAKRSRQK-------MELSIGMN 178
+ IMG DG + +HT KL N + L KRS+Q +++ +G+N
Sbjct: 176 --QMIMG---DGSVAIHTRNQKYGKLQNGHFMKVTPSLIKRSKQHFYSLECGVDVILGLN 230
Query: 179 GKIWI 183
G IWI
Sbjct: 231 GYIWI 235
>gi|367001080|ref|XP_003685275.1| hypothetical protein TPHA_0D02030 [Tetrapisispora phaffii CBS 4417]
gi|357523573|emb|CCE62841.1| hypothetical protein TPHA_0D02030 [Tetrapisispora phaffii CBS 4417]
Length = 365
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 24/157 (15%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV--LSYLAFEGATKKNPPK------ 99
++ RY P GD ++G +T ++VDIG AV L + G + +
Sbjct: 101 LKGRYTPETGDHIVGRITDVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQM 160
Query: 100 ---VETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPK 156
++ GDV+ ++ + +D + + + G L DG L+ SL + N
Sbjct: 161 RTFLKEGDVLNAEVQSLFQDGSASLHT-----RSLKYGKLRDGLLIQVPSSLVVRSKNHT 215
Query: 157 CPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVR 193
L + + +G+NG IW+R S D R
Sbjct: 216 HNLPGNVT--------VLLGVNGFIWLRKTSKMDVAR 244
>gi|341582109|ref|YP_004762601.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. 4557]
gi|340809767|gb|AEK72924.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. 4557]
Length = 256
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE + I + G++ + T V ++ Y+P GD VIG + N+ VDI
Sbjct: 26 GRGTFREGNRIYSTVVGLV-EIRGDTIRVIPLEGPYIPEVGDNVIGKIVDVRFSNWTVDI 84
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVET--------GDVVAGKLLTANKDMESEMVCVDSRG 128
G+ A L + AT++ +T GD++ ++ N E + + ++G
Sbjct: 85 GAPYQA---GLRVQDATEERIDLAKTDLRRIFDIGDIIYARIKAYN---EINQIDLTTKG 138
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
F G L G ++ + S +L+ ++ + K + + + +G NG +W+
Sbjct: 139 MPFRGGPLRGGQIVEITPSKVPRLIGKGGSMINLIKKLTGTR--IIVGQNGWVWV 191
>gi|255567640|ref|XP_002524799.1| rrp4, putative [Ricinus communis]
gi|223535983|gb|EEF37642.1| rrp4, putative [Ricinus communis]
Length = 322
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 27/194 (13%)
Query: 3 GDTLSLNAEPRLIL-GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVI 61
DT+ ++ E IL G G ++ + G++ Y V ++ RY P GD+++
Sbjct: 39 ADTIPISLEDGNILKGHGTAERDGEVVATTCGVVERVNMLVY-VRSLRSRYKPEVGDIIV 97
Query: 62 GVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEM 121
G V ++++I AVL ++ P ++ +L N E+++
Sbjct: 98 GRVIEVAQKRWKLEINFSQDAVLML-----SSMNLPDGIQRRRTALDELNMRNVFEENDV 152
Query: 122 VCVDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPKCPLLK---QLAKRSRQK------- 170
VC + R NDG L L KL K LL L KR +Q
Sbjct: 153 VCAEVR------NFQNDGSLQLQARSQKYGKL--EKGQLLTVSPYLVKRQKQHFHHLVQY 204
Query: 171 -MELSIGMNGKIWI 183
++L +G NG IW+
Sbjct: 205 DVDLILGCNGFIWV 218
>gi|302689775|ref|XP_003034567.1| hypothetical protein SCHCODRAFT_43279 [Schizophyllum commune H4-8]
gi|300108262|gb|EFI99664.1| hypothetical protein SCHCODRAFT_43279, partial [Schizophyllum
commune H4-8]
Length = 258
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
G+TL+ E + G G + ++ S +G + V ++ RY P GDLV+G
Sbjct: 21 GETLTSTQE--FMRGHGTYVDGEQVIASVAGAIERVNKLVT-VRPVRTRYNPEVGDLVVG 77
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMV 122
VT ++VD S A L A+ P V+ + + +L E +++
Sbjct: 78 RVTEVQPRRWKVDANSRQDAALML-----ASVNLPGGVQRRKLESDELQMRTFFEEGDLL 132
Query: 123 CVDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPKCPLLKQ-LAKRSRQK-------MEL 173
+ + I+ DG + LHT KL N + + L KR + ++L
Sbjct: 133 VAE------VQAIMGDGSMSLHTRSLRYGKLRNGQLVTVPPILVKRLKSHFITLPCDVDL 186
Query: 174 SIGMNGKIWI 183
+G+NG IW+
Sbjct: 187 ILGLNGYIWV 196
>gi|167044980|gb|ABZ09645.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG8G2]
Length = 228
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAF-EGA---TKKNPPKVETGDVV 106
Y+P DLVIG + S G+++ DI S + +L F G+ T + +++ GD++
Sbjct: 59 YIPKIDDLVIGTIQSIFGNSWFADINSCYQGMLLGQDVFGRGSYPTTSEMKERLDKGDII 118
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
++ +++ E + D +G ++ G L+ + +L+ +++ +
Sbjct: 119 FARIANSDRQREPLISIADKN-----LGKIDSGELIKIPPTKIPRLIGKHGSMIQTI--E 171
Query: 167 SRQKMELSIGMNGKIWIRCE 186
+ +++G NG I + C+
Sbjct: 172 ASTNATITVGQNGFIVVSCD 191
>gi|354547831|emb|CCE44566.1| hypothetical protein CPAR2_403690 [Candida parapsilosis]
Length = 348
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 45 VDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVL 84
V+ I+ +YVP GD V+G +T ++VDIG+ A+L
Sbjct: 90 VNAIRGKYVPETGDHVVGRITEVANKRWKVDIGTKQDAIL 129
>gi|390600048|gb|EIN09443.1| exosome complex exonuclease rrp4 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 285
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAV--LSYLAFEGATKKNPPKVETGDV 105
++ RY P GDLVIG +T ++VD S AV LS + G ++ KVE+ ++
Sbjct: 60 LRSRYNPEVGDLVIGRITDVQPKRWKVDANSRQDAVLMLSSVNLPGGIQRR--KVESDEL 117
Query: 106 VAGKLLTANKDMESEMVCVDSRG------KEFIMGILNDGYLLHTSISLCRKL----LNP 155
+ +E+ S G + G L +G L+ L R+L L
Sbjct: 118 QMRSFFEEGDLLVAEVQAFFSDGAMSLHTRSLRYGKLRNGQLVSIPPILVRRLKSQFLTL 177
Query: 156 KCPLLKQLAKRSRQKMELSIGMNGKIWI 183
C ++L +G+NG IW+
Sbjct: 178 PC------------GVDLILGLNGYIWV 193
>gi|449296522|gb|EMC92542.1| hypothetical protein BAUCODRAFT_78185 [Baudoinia compniacensis UAMH
10762]
Length = 305
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 10/186 (5%)
Query: 7 SLNAEPRLILGPGLRRESSAILVSQS--GILRHAKPFTYYVDYIQRRYVPTRGDLVIGVV 64
++ +P+ + G G + +I + + G L+ V ++ RY P GDLVIG +
Sbjct: 22 TITDDPQWMRGHGTFAGADSITIRSTLAGTLQKTNKLLSIVP-LRARYTPEIGDLVIGRI 80
Query: 65 TSRVGDNYRVDI--GSHDPAVLSYLAFEGATKKNPPKVETGDVVA----GKLLTANKDME 118
G ++VD+ +LS + G + V+ ++ A G+LL A
Sbjct: 81 VEVQGRRWKVDVAAPLLANLLLSSINLPGGVLRKRTSVDELNIRAFFGEGELLVAEVQSL 140
Query: 119 SEMVCVDSRGKEFIMGILNDGYLLHTS-ISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM 177
+ + G L +GY + S + ++ K + RS ++++ +G+
Sbjct: 141 FQDGSASLHTRSLRYGKLRNGYFMSVSGMGGGAGVVRAKRQIFTLQTTRSGGEVDVILGV 200
Query: 178 NGKIWI 183
NG IWI
Sbjct: 201 NGYIWI 206
>gi|328875590|gb|EGG23954.1| Exosome complex exonuclease RRP4 [Dictyostelium fasciculatum]
Length = 379
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 7 SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
+++ E + G G +++ S SG++ V RY GD+++G +T
Sbjct: 81 TISKEGEYLKGHGTFHHQGSLIASVSGVVDKVDKLVS-VRAFHSRYQGEIGDIIVGRITQ 139
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
++VD + +L A P ++ + +L N +E++++ +
Sbjct: 140 VAAKRWKVDCNARQDYILMLTAINL-----PGGIQRRRTSSDELQMRNFFVENDLIYAE- 193
Query: 127 RGKEFIMGILNDGYL-LHTSISLCRKLLNPK-CPLLKQLAKRSRQK-------MELSIGM 177
+ I DG + LHT KL+N + L KRS+Q +++ +G+
Sbjct: 194 -----VQAINGDGSVALHTRNQRYGKLMNGVLVSVPPALIKRSKQHAHTLDCGVDIILGV 248
Query: 178 NGKIWI 183
NG IWI
Sbjct: 249 NGYIWI 254
>gi|168019913|ref|XP_001762488.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686221|gb|EDQ72611.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 357
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPA--VLSYLAFEGATKKNPPKVETGDV 105
++ RY GD+V+G VT G+ ++VD+ S A +L+ + G ++ ++ ++
Sbjct: 126 LRARYNAETGDVVVGRVTEVGGNRWKVDVNSRKDAELLLAAVNLPGGIQRRRTAID--EL 183
Query: 106 VAGKLLTANKDMESEMVCVDSRG------KEFIMGILNDGYLLHTSISLCRKLLNPKCPL 159
L N + +E+ + G + G L +G L+ + L ++ L
Sbjct: 184 NMRDLYVENDLISAEVQSLHQDGSLHLHTRSLKYGKLGNGQLVKVAPYLIKR-LKQHFHQ 242
Query: 160 LKQLAKRSRQKMELSIGMNGKIWIRCESF---SDTVRVGNLIMSCELLSYEEILNL 212
LK L ++L +G NG IWI S D R G+++ S E +
Sbjct: 243 LKDLG------VDLILGCNGFIWIAGTSAPGQKDNKRSGSVVTSASAAEGESAVQF 292
>gi|339238057|ref|XP_003380583.1| exosome complex exonuclease RRP4 [Trichinella spiralis]
gi|316976511|gb|EFV59796.1| exosome complex exonuclease RRP4 [Trichinella spiralis]
Length = 551
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 20/172 (11%)
Query: 23 ESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPA 82
++ +LVS GI + F ++ ++ RY + GD VIG V + ++VD+ + A
Sbjct: 43 DNGELLVSTVGIAKKTNKFIC-IETVRSRYCGSVGDYVIGRVVEVLQKRWKVDVNARLNA 101
Query: 83 V--LSYLAFEGATKKNPPKVETG----DVVAGKLLTANKDMESEMVCVDSRGK-----EF 131
+ LS + G + + + ++V G L++ + +E++ V + G
Sbjct: 102 ILLLSSVNLPGGELRRKSEEDEQWMRENLVEGDLISVGFVVVAEVMSVYADGSLSLQLRD 161
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
I LN G L+ L +K K K+ +S G+NG IWI
Sbjct: 162 IHRKLNQGVLVSVPSFLIKK--------RKVHLHHFPCKVTVSFGINGNIWI 205
>gi|315229926|ref|YP_004070362.1| exosome complex RNA-binding protein 1 [Thermococcus barophilus MP]
gi|315182954|gb|ADT83139.1| exosome complex RNA-binding protein 1 [Thermococcus barophilus MP]
Length = 255
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G +E + I + G++ F + ++ Y+P GD VIG + ++ VDI
Sbjct: 26 GRGTFKEGNRIYSTVVGLVDIRNDFIRVIP-LEGPYIPEVGDNVIGKIVDVKFSSWTVDI 84
Query: 77 GSHDPAVLSYL-AFEGAT---KKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
G+ A L A E K + K+ + GD++ K+ N E + + ++G F
Sbjct: 85 GAPYQATLRIQDAVEEKIDLLKTDLRKIFDIGDIIYAKVKAFN---EVNQIDLTTKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWI 183
G L G ++ + S +L+ ++ + K ++ + + +G NG +W+
Sbjct: 142 NGGPLKGGQIVKITPSKVPRLIGKGGSMINLIKKMTQTR--IIVGQNGWVWV 191
>gi|303274582|ref|XP_003056609.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462693|gb|EEH59985.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 307
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE---GATKKNPPKVETG----- 103
Y P GD+V+G V R G +++DI S A L A G ++ E
Sbjct: 79 YKPETGDVVLGRVIERAGKCWKLDINSWQDASLHLSAINLPGGIPRRRNADDELNMRQLY 138
Query: 104 ---DVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLL 160
D+V+ ++ + ++D V + +RG ++ G ++ G L IS+ L+
Sbjct: 139 DDDDLVSAEVQSVHRD---GTVMLHTRGPKY--GCMSLGQL----ISVVPVLVKRAETHF 189
Query: 161 KQLAKRSRQKMELSIGMNGKIWI 183
++ + +E+ IG NG IW+
Sbjct: 190 HRVCSDLKTDIEILIGCNGYIWV 212
>gi|224072941|ref|XP_002303939.1| predicted protein [Populus trichocarpa]
gi|222841371|gb|EEE78918.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 79/192 (41%), Gaps = 24/192 (12%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIG 62
DT+ ++ E ++ G G ++ + G++ Y V ++ RY P GD+++G
Sbjct: 39 ADTIPVSNEDTILKGHGTSERDGEVVATLCGVVERVNKLVY-VRTLRARYKPEIGDIIVG 97
Query: 63 VVTSRVGDNYRVDIGSHDPAVLSYLAF---EGATKKNPPK--------VETGDVVAGKLL 111
V ++++I AVL + +G ++ E DVV G++
Sbjct: 98 RVVEVAQKRWKLEINFSQDAVLMLSSMNLPDGLQRRRTALDELNMRSIFEENDVVCGEVR 157
Query: 112 TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
D + + +R +++ G L G LL L ++ + L + +
Sbjct: 158 NFQNDG---GIQLQARSQKY--GKLEKGQLLTIPPYLVKRQKHHFHHL-------EQYGV 205
Query: 172 ELSIGMNGKIWI 183
+L +G NG IW+
Sbjct: 206 DLILGCNGFIWV 217
>gi|409045039|gb|EKM54520.1| hypothetical protein PHACADRAFT_258426 [Phanerochaete carnosa
HHB-10118-sp]
Length = 288
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)
Query: 7 SLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTS 66
+L + + G G ++ ++ S +G + V + RY P GDLV+G +T
Sbjct: 23 TLTSSHAFMRGHGTYVDNDEVVASVAGTVERVNKLIS-VRAARTRYNPEVGDLVVGRITE 81
Query: 67 RVGDNYRVDIGSHDPAV--LSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCV 124
++VD GS AV LS + G ++ K+E+ ++ + +E+
Sbjct: 82 VQPRRWKVDAGSRQDAVLMLSSVNLPGGVQRR--KLESDELQMRTFFEEGDLLVAEVQAF 139
Query: 125 DSRG------KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN 178
+ G + G L +G L+ +L R+L + L ++L +G+N
Sbjct: 140 FADGAMSLHTRSLRYGKLRNGQLVVVPPALIRRLKSHFTSL--------PCGVDLILGLN 191
Query: 179 GKIWI 183
G IW+
Sbjct: 192 GYIWV 196
>gi|212223174|ref|YP_002306410.1| exosome complex RNA-binding protein Rrp4 [Thermococcus onnurineus
NA1]
gi|212008131|gb|ACJ15513.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 256
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYL-AFE---GATKKNPPKV-ETGDVV 106
Y+P GD VIG + N+ VDIG+ A L A E K + K+ + GD++
Sbjct: 60 YIPEVGDNVIGKIVDVKFSNWTVDIGAPYQANLRVQDAVEERIDVLKTDLRKIFDIGDII 119
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
K+ N E + + ++G F G L G ++ + S +L+ ++ + K
Sbjct: 120 YAKIKAYN---EINQIDLTTKGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKL 176
Query: 167 SRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+ + + +G NG +W+ + E L+ E IL + H + L
Sbjct: 177 TGTR--IIVGQNGWVWVSGKK-----------EELEKLAIEAILKVDRESHTQGL 218
>gi|357164734|ref|XP_003580149.1| PREDICTED: exosome complex component rrp4-like [Brachypodium
distachyon]
Length = 325
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 28/196 (14%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQR------RYVPTRG 57
D++ +N E ++ G G ++ + G++ Y V ++R RY P G
Sbjct: 40 DSIPVNQEDNILKGHGAADHDGEVVATLCGVVERVNKLVY-VRTLRRGILSLFRYKPEVG 98
Query: 58 DLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDM 117
D+++G V +R++I AVL ++ P ++ +L +
Sbjct: 99 DIIVGRVIEIAPKRWRLEINFTQDAVLML-----SSMNLPDGIQRRRTAVDELNMRSIFE 153
Query: 118 ESEMVCVDSRGKEFIMGILNDGYLLHTSIS-----LCR-KLLNPKCPLLKQLAKR----S 167
E+++VC + RG + +DG L + S L R +LL L+K+ +
Sbjct: 154 ENDVVCAEVRGFQ------HDGSLHLQARSQKYGKLQRGQLLTVPAYLVKRRKQHFHHLE 207
Query: 168 RQKMELSIGMNGKIWI 183
+ ++L +G NG IW+
Sbjct: 208 QYDVDLILGCNGFIWV 223
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,438,799,875
Number of Sequences: 23463169
Number of extensions: 136490039
Number of successful extensions: 270923
Number of sequences better than 100.0: 636
Number of HSP's better than 100.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 285
Number of HSP's that attempted gapping in prelim test: 269647
Number of HSP's gapped (non-prelim): 665
length of query: 222
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 85
effective length of database: 9,144,741,214
effective search space: 777303003190
effective search space used: 777303003190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)