BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy230
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3T0E1|EXOS3_BOVIN Exosome complex component RRP40 OS=Bos taurus GN=EXOSC3 PE=2 SV=1
Length = 275
Score = 193 bits (490), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 144/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
L LNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LRLNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 264
>sp|Q9NQT5|EXOS3_HUMAN Exosome complex component RRP40 OS=Homo sapiens GN=EXOSC3 PE=1 SV=3
Length = 275
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 6 LSLNAEP----RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>sp|Q7TQK4|EXOS3_MOUSE Exosome complex component RRP40 OS=Mus musculus GN=Exosc3 PE=1 SV=3
Length = 274
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 142/211 (67%), Gaps = 10/211 (4%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKPF-----TYYVDYIQRRYVPTRGD 58
L+ A PRL + GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD
Sbjct: 55 LNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGD 114
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+V ++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME
Sbjct: 115 HVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDME 174
Query: 119 SEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM 177
EMVC+DS G+ MG++ DG L ++ L RKLL P C ++++L K +E+ GM
Sbjct: 175 PEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIVQELGKLY--PLEIVFGM 232
Query: 178 NGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
NG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 233 NGRIWVKAKTIQQTLILANVLEACEHMTTEQ 263
>sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40 OS=Dictyostelium
discoideum GN=exosc3 PE=3 SV=1
Length = 237
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 127/208 (61%), Gaps = 3/208 (1%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYY-VDYIQRRYVPTRGDLVI 61
GD + + ++ +GPGL + +L +++G+LR++K +Y ++ Q+RYVP D+VI
Sbjct: 12 GDVIGKIGDLKVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQKRYVPQVEDMVI 71
Query: 62 GVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEM 121
G + + ++++VDIGS A+LS +FEGATK N P + G+++ ++ AN+DME E+
Sbjct: 72 GTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCRVTVANRDMEPEV 131
Query: 122 VCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKI 181
VC+ + K G L GY+L+ S+ L LL+ C LL+ L K E+++G+NG++
Sbjct: 132 VCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSEDCFLLQILGKHI--PYEIAVGVNGRV 189
Query: 182 WIRCESFSDTVRVGNLIMSCELLSYEEI 209
WI S +T+ V N I + + + ++I
Sbjct: 190 WINSGSNHNTIVVSNTIYNSQYIQDDQI 217
>sp|Q08285|RRP40_YEAST Exosome complex component RRP40 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP40 PE=1 SV=2
Length = 240
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRE--SSAILVSQSGILRHAKP-----FTYYVDYIQRRYV 53
GD+ ++ + LGPG+ + + I +G+L + T Y+DY +RY+
Sbjct: 6 FPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYI 65
Query: 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLT 112
P+ D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ T
Sbjct: 66 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCT 125
Query: 113 ANKDMESEMVCVDS-RGKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQK 170
A K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K
Sbjct: 126 AEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHT--K 183
Query: 171 MELSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
E++IG+NGKIW++CE S+T+ IM C
Sbjct: 184 FEVAIGLNGKIWVKCEELSNTLACYRTIMEC 214
>sp|O13903|RRP40_SCHPO Exosome complex component rrp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp40 PE=3 SV=1
Length = 240
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 8/207 (3%)
Query: 16 LGPGL----RRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
LGPGL + I+VS++G L +D +RY+P D VIG + SR +
Sbjct: 32 LGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKRYIPATNDQVIGQIISRFAEG 91
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRGKE 130
YRVDIGS A L+ LAFE T+K+ P + G +V ++ A++DME E+ C D + GK
Sbjct: 92 YRVDIGSAHIAQLNALAFENVTRKSRPNLNVGSLVYARVSLADRDMEPELECFDATTGKA 151
Query: 131 FIMGILNDGYLLH-TSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFS 189
G L +GY++ S+S CRKL+ PK LL+ L S E+++GMNG++W+ E+ S
Sbjct: 152 AGYGELKNGYMITGLSLSHCRKLILPKNTLLQTLG--SYIPFEIAVGMNGRVWVNSENLS 209
Query: 190 DTVRVGNLIMSCELLSYEEILNLCESI 216
TV + I +CE +S EE + C+ +
Sbjct: 210 TTVLICTAIRNCEFMSDEEQIKYCKDL 236
>sp|E0SQX5|ECR1_IGNAA Probable exosome complex RNA-binding protein 1 OS=Ignisphaera
aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1)
GN=Igag_1503 PE=3 SV=1
Length = 253
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLS---YL--AFEGATKKNPPKVETGDV 105
RY+P GD+VIG+V ++ +DI S +VL+ YL +F T +E GDV
Sbjct: 74 RYIPREGDIVIGIVVDVTLSSWIIDINSPYLSVLNASDYLGRSFNPLTDNIRKYLEIGDV 133
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
V GK+ T ++ ++ V +G +G + DG L+ +++ K +L L +
Sbjct: 134 VVGKIATFDRS-RGPILTVQDKG----LGKVVDGSLIEIEPIKVARVIGKKKSMLNMLIE 188
Query: 166 RSRQKMELSIGMNGKIWIRC 185
++ K ++ +G NG+I +RC
Sbjct: 189 QT--KCDILVGNNGRIILRC 206
>sp|B1L6N8|ECR1_KORCO Probable exosome complex RNA-binding protein 1 OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1371 PE=3 SV=1
Length = 228
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111
Y+P DLVIG+V+ G+ VDI S L ++ GDV+ K+
Sbjct: 63 YIPKEDDLVIGIVSKISGNTILVDIRSPYQGALPIQRRAERVDLKKYDLKIGDVILAKVR 122
Query: 112 TANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKM 171
+ + S ++ +D+ G +G L GYLL + +++ + +L L + +R
Sbjct: 123 SFD-GASSLILTIDAEG----LGKLEGGYLLEVDPAKVPRVIGKRQSMLSMLKEATRS-- 175
Query: 172 ELSIGMNGKIWIRCESFSDTV 192
E+ + NG+IW++ S + +
Sbjct: 176 EIIVANNGRIWVKPPSVKELI 196
>sp|Q9YC02|ECR1_AERPE Probable exosome complex RNA-binding protein 1 OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=APE_1448 PE=1 SV=1
Length = 235
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEG-----ATKKNPPKVETGDVV 106
YVP GD+VIG++ S N+ VDI S AVLS F G A ++ GD +
Sbjct: 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYI 121
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
K++ +K S ++ V G +G + G ++ S + +++ K +LK L ++
Sbjct: 122 KAKVVAFDK-TRSPLLTVQGEG----LGRIVRGKIVEISPAKVPRVIGRKMSMLKTLEEK 176
Query: 167 SRQKMELSIGMNGKIWIRC 185
+ K + + NG+I + C
Sbjct: 177 TECK--IFVARNGRIHLEC 193
>sp|D5U396|ECR1_THEAM Probable exosome complex RNA-binding protein 1 OS=Thermosphaera
aggregans (strain DSM 11486 / M11TL) GN=Tagg_1335 PE=3
SV=1
Length = 247
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNP------PKVETGDV 105
Y+P + DLVIG+V + + +DI S P VL+ A E NP ++TGD
Sbjct: 70 YIPRKDDLVIGIVENVGVTAWTLDIRSPYPGVLN--ASEVIEGFNPLIHNLRNYLDTGDF 127
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
V G++ ++ + ++ V +G +G + +G ++ S +L+ + + L
Sbjct: 128 VIGRIALFDRTRDP-VITVKGKG----LGKITEGVVVDVKPSKIPRLIGKRGSMYNLLT- 181
Query: 166 RSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLS 205
S E++I NG +W++C D R LI + +L+
Sbjct: 182 -SMSGCEITIAQNGFVWLKCH---DENRAKVLIQAIKLIE 217
>sp|A9A5C8|ECR1_NITMS Probable exosome complex RNA-binding protein 1 OS=Nitrosopumilus
maritimus (strain SCM1) GN=Nmar_0431 PE=3 SV=1
Length = 226
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLA--------FEGATKKNPPKVET 102
+Y+P DLVIG V S ++ +DI S + +L F + K+ T
Sbjct: 55 KYIPKINDLVIGKVNSHTSLSWELDINS---CYVGFLPAQDVFGRDFSAHADELATKLRT 111
Query: 103 GDVVAGKLLTANKDMESE-MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLK 161
GD+VA ++ AN D + +V + R +G ++ G L+ S S +L+ K +++
Sbjct: 112 GDLVAARI--ANFDRTRDPLVSISDRD----LGKIDSGVLMEISPSKVPRLIGKKGSMIQ 165
Query: 162 QLAKRSRQKMELSIGMNGKIWIRCES 187
+ + + ++IG NG + + CES
Sbjct: 166 MIEEAT--DAAVTIGQNGWVVVSCES 189
>sp|O29758|ECR1_ARCFU Probable exosome complex RNA-binding protein 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_0492 PE=1 SV=1
Length = 223
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 25/191 (13%)
Query: 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV 60
+ GD LS N PR G G E + G+ + + ++ RY P+ GD+V
Sbjct: 6 LPGDLLSTN--PRA-AGYGTYVEGGKVYAKIIGLFDQTETHVRVIP-LKGRYTPSVGDVV 61
Query: 61 IGVVTSRVGDNYRVDIGSHDPAVLSYLAF-------EGATKKNPPKV-ETGDVVAGKLLT 112
IG++ + + VDI S Y AF E K P +V + GD + K+L
Sbjct: 62 IGIIREVAANGWAVDIYS------PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 115
Query: 113 ANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKME 172
+ M+ + K+ I + G ++ + + +++ K ++K L +S ++
Sbjct: 116 IDPKMKVTLTM-----KDRICRPIRFGRIVAINPARVPRVIGKKGSMIKLL--KSELDVQ 168
Query: 173 LSIGMNGKIWI 183
+ +G NG IW+
Sbjct: 169 IVVGQNGLIWV 179
>sp|A5UJS0|ECR1_METS3 Probable exosome complex RNA-binding protein 1
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=Msm_0243 PE=3 SV=1
Length = 298
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 10 AEPRLILGPGLRRESSAILVSQSGI--LRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
A+ G G +E+ I S G+ LR+ K V ++ +YVP +GD+VIG +
Sbjct: 17 ADDEYYSGRGTFKENGKICSSLMGLVSLRNKK---IRVIPLKSKYVPKKGDVVIGKIKDV 73
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDS 126
+ VDI S +L G KK KV + GDV+ +++ ++ + ++ +
Sbjct: 74 RFSMWDVDINSPYSGILPAFEVFGREKKELNKVFDVGDVLFLRVVDVDEVKKVKL-GLKG 132
Query: 127 RGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
RG MG G ++ + + +L+ K ++ + ++ K + +G NG +W++ E
Sbjct: 133 RG----MGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCK--IIVGQNGLVWVKGE 186
Query: 187 S 187
Sbjct: 187 E 187
>sp|O26780|ECR1_METTH Probable exosome complex RNA-binding protein 1
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_684 PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 10 AEPRLILGPGLRRESSAILVSQSGIL--RHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSR 67
AE G G +E + I S G++ R+ K V +Q +Y+P RGD+VIG +T
Sbjct: 17 AENEYFPGRGTFKEDNRICSSFVGLVSVRNKK---INVIPLQSKYIPKRGDVVIGEITDI 73
Query: 68 VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR 127
+ +DI S +L G K+ V D+V LL E + V + +
Sbjct: 74 RFSMWGLDINSPYTGLLPASEVFGKDKRELESV--FDIVDVLLLRVVDVDEVKKVKLGLK 131
Query: 128 GKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186
G+ +G DG L++ + + +L+ + ++ + +++ ++ +G NG +WI+ E
Sbjct: 132 GRG--LGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTH--CDIVVGQNGVVWIKGE 186
>sp|Q9V120|ECR1_PYRAB Probable exosome complex RNA-binding protein 1 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06090 PE=3 SV=1
Length = 265
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE S I + G++ K T V ++ Y+P GD VIG + ++ VDI
Sbjct: 26 GRGTFREGSRIYSTVIGLV-DIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDI 84
Query: 77 GSHDPAVLSYLAFEGAT----KKNPPK-VETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
G+ PA L F + + K + GD++ K+ E + + ++G F
Sbjct: 85 GAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIYAKVKAIT---EVNNIDLTTKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G ++ + S +++ ++ + K + + + +G NG IW+ ++
Sbjct: 142 NGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR--IIVGQNGWIWVSGKN---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+ E L+ E IL + + H R L
Sbjct: 196 -------DALEKLAIEAILKIDKESHTRGL 218
>sp|Q8U0L8|ECR1_PYRFU Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1569 PE=3 SV=1
Length = 264
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G +E S I + G++ K T V ++ Y+P GD V+G + ++ VDI
Sbjct: 26 GRGTFKEGSRIYSTVIGLV-DIKGNTIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDI 84
Query: 77 GSHDPAVLSYLAFEGAT----KKNPPK-VETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
GS A L + + + K + GD++ K+ N E + + ++G F
Sbjct: 85 GSPYSATLKIQDYTDEKIDLLRTDLRKFFDIGDIIYAKVKGIN---EVNNIELTTKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G ++ + S +++ ++ + K ++ + + +G NG IWI ++
Sbjct: 142 NGGPLRGGQIIKITSSKVPRVIGKGGSMINMIKKLTQSR--IIVGQNGWIWISSKN---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
E L+ E IL + H R L
Sbjct: 196 -------PELEKLAIEAILKIERESHTRGL 218
>sp|Q8ZVM8|ECR1_PYRAE Probable exosome complex RNA-binding protein 1 OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=PAE2208 PE=3 SV=1
Length = 235
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKN-----PPKVET 102
++ Y P +GDLVIG VT + + VD+ S PA YL A ++ P
Sbjct: 54 LEGTYKPKKGDLVIGYVTDVLATGWEVDVRSFMPA---YLPVGEALHRHVDLETTPLTTF 110
Query: 103 GDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQ 162
++ + ++ + K+ +G + G ++ + +++ + +L
Sbjct: 111 LNIGDVVVAKVKDVDLTDEYPIILTLKDEKVGKVESGTVVEITPVKVPRVIGKRGSMLNT 170
Query: 163 LAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESI 216
L + ++ +G NG+IW++C+ D V + +LI E S+ ++ L + I
Sbjct: 171 LMELG---CDIVVGQNGRIWVKCKDPRDEVFLASLIRKIEAESH--VMGLTDRI 219
>sp|Q09704|RRP4_SCHPO Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rrp4 PE=3 SV=1
Length = 329
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 11 EPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
+P+ + G G E I S +G ++ V ++ +YVP GDL+IG +
Sbjct: 67 DPQFMRGHGTYFEDGGIYASVAGSVQRVNKLIS-VKPLRSKYVPEIGDLIIGKIAEVQPK 125
Query: 71 NYRVDIGSHDPAVL 84
++VDIG+ AVL
Sbjct: 126 RWKVDIGAKQNAVL 139
>sp|O59221|ECR1_PYRHO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH1551 PE=3 SV=1
Length = 265
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE S I + G++ K T V ++ Y+P GD VIG + ++ VDI
Sbjct: 26 GRGTFREGSRIYSTVIGLV-DIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDI 84
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVET--------GDVVAGKLLTANKDMESEMVCVDSRG 128
G+ L+ L + T + + T GD++ GK+ E + + ++G
Sbjct: 85 GA---PYLANLKIQDFTDEKIDLLRTDLRKFFDIGDIIYGKVKAIT---EVNNIDLTTKG 138
Query: 129 KEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESF 188
F G L G ++ + S +++ ++ + K + + + +G NG IW+ ++
Sbjct: 139 MPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR--IIVGQNGWIWVNGKN- 195
Query: 189 SDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+ E L+ E IL + H + L
Sbjct: 196 ----------EALEKLAIEAILKIDRESHTKGL 218
>sp|Q2NEX6|ECR1_METST Probable exosome complex RNA-binding protein 1 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_1250 PE=3 SV=1
Length = 222
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG G +E+ I S +G++ + + V ++ Y P GDLVIG VT ++ +D
Sbjct: 23 LGRGTYKENGKIYSSITGLV-YFESEQIKVIPLKDTYSPNYGDLVIGRVTGSSYSSWSID 81
Query: 76 IGSHDPAVLSYLAFEGATK---KNPPKVETGDVVAGKLL--TANKD-MESEMVCVDSRGK 129
I S +Y F T+ KN P + + LL AN D + + + SRG
Sbjct: 82 INS------TYHGFLPTTELYDKNEPNINNIINIKDMLLLRVANVDEINRVKLTLRSRG- 134
Query: 130 EFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIR 184
+G N G ++ L L + + + ++ IG NG IWI
Sbjct: 135 ---LGKFNQGTIIKVKQPTIHFLSEENAFLTTMIQEYTYT--DVIIGKNGLIWIN 184
>sp|Q97BZ6|ECR1_THEVO Probable exosome complex RNA-binding protein 1 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV0309 PE=3 SV=1
Length = 236
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 44 YVDYI--QRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLS-----YLAFEGATKKN 96
YVD + +Y+P +GD VIG + + VDI S A+L + G K+
Sbjct: 49 YVDVVPFSGQYIPRKGDKVIGKIIEVGPSTWTVDINSPYFAMLHMNDTPWRISSGDLKR- 107
Query: 97 PPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPK 156
+ +GD V K+++ N+ ES + KE + L G+++ S +++
Sbjct: 108 --YLNSGDYVYAKIMSVNEIKESWLTL-----KEPGLKKLEGGHMVLIHASRVPRVIGKG 160
Query: 157 CPLLKQLAKRSRQKMELSIGMNGKIWI 183
++ + + + + + IG NG IWI
Sbjct: 161 GGMVNMVKELTSTR--IIIGQNGLIWI 185
>sp|Q5JIR5|ECR1_PYRKO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1635 PE=3 SV=1
Length = 257
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 22/210 (10%)
Query: 17 GPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
G G RE +AI + G++ + V ++ Y+P GD V+G + ++ VDI
Sbjct: 26 GRGTFREGNAIYSTVIGLV-EIRGNVIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDI 84
Query: 77 GSHDPAVLSYL-AFE---GATKKNPPKV-ETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131
G+ A L A E K + K+ + GD++ K+ N E + + ++G F
Sbjct: 85 GAPYQASLRVQDAVEERIDLLKTDLRKIFDIGDIIYAKVKAFN---EVNQIDLTTKGMPF 141
Query: 132 IMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDT 191
G L G L+ + S +L+ ++ + ++ + +G NG +W+ ++
Sbjct: 142 KGGPLRGGQLVTITPSKVPRLIGKGGSMINMI--KTLTGTRIIVGQNGWVWVSGKN---- 195
Query: 192 VRVGNLIMSCELLSYEEILNLCESIHIRFL 221
E L+ E IL + H + L
Sbjct: 196 -------DELERLAIEAILKVDRESHTQGL 218
>sp|Q9HIP3|ECR1_THEAC Probable exosome complex RNA-binding protein 1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=Ta1292 PE=3 SV=1
Length = 236
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLS-----YLAFEGATKKNPPKVETGDV 105
+Y+P +GD VIG V + VDI S A+L + G K+ + GD
Sbjct: 58 QYIPRKGDKVIGKVIEVGPSTWTVDINSPYFAMLHMNDTPWRMSSGDLKR---YLNAGDY 114
Query: 106 VAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAK 165
+ K+++ N+ ES + KE + L G+++ S +++ ++ + +
Sbjct: 115 IYAKIMSVNEIKESWLTL-----KEPGLKKLEGGHMVLIHASRVPRVIGKGGGMVNMVKE 169
Query: 166 RSRQKMELSIGMNGKIWI 183
+ + + IG NG IWI
Sbjct: 170 LTATR--IIIGQNGLIWI 185
>sp|E3GZ90|ECR1_METFV Probable exosome complex RNA-binding protein 1 OS=Methanothermus
fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24
S) GN=Mfer_0823 PE=3 SV=1
Length = 222
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKV-ETGDVV 106
+Q +Y+P + D VIG V + VDI S A+L KKN ++ GD +
Sbjct: 54 LQGKYIPKKNDSVIGKVVDVKFARWIVDIRSPYSAILPVSEVIDKGKKNLEEIFGIGDTL 113
Query: 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKR 166
K++ ++ + ++ + + L G L + + S +++ K ++K L K
Sbjct: 114 FLKIIEVDEVKKVKLGLHEGGPIK-----LEGGTLAYITPSKVPRVIGRKGSMIKMLKKL 168
Query: 167 SRQKMELSIGMNGKIWIRCES 187
+ E+ +G NG IW++ +
Sbjct: 169 TN--CEILLGQNGVIWVKGDK 187
>sp|P38792|RRP4_YEAST Exosome complex component RRP4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP4 PE=1 SV=1
Length = 359
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 20/155 (12%)
Query: 48 IQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVA 107
++ RY P GD V+G + ++VDIG AVL + N P G ++
Sbjct: 100 LKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSV------NLP----GGILR 149
Query: 108 GKLLTANKDMESEMVCVDSRGKEFIMGILNDGYL-LHTSISLCRKLLNPK-CPLLKQLAK 165
K + M S + D E + + DG LHT KL N C + L
Sbjct: 150 RKSESDELQMRSFLKEGDLLNAE-VQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIV 208
Query: 166 RSRQ-------KMELSIGMNGKIWIRCESFSDTVR 193
R++ + + +G+NG IW+R S D R
Sbjct: 209 RAKNHTHNLPGNITVVLGVNGYIWLRKTSQMDLAR 243
>sp|P23478|ADDA_BACSU ATP-dependent helicase/nuclease subunit A OS=Bacillus subtilis
(strain 168) GN=addA PE=1 SV=2
Length = 1232
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKC--- 157
E DVV + ++K +E +V V G+ F M LN YLL + K ++P+
Sbjct: 783 EQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRIS 842
Query: 158 -PLLKQLAKRSRQKMEL 173
P L +A + + + EL
Sbjct: 843 YPTLPLIAMKKKMRREL 859
>sp|Q65LJ9|ADDA_BACLD ATP-dependent helicase/nuclease subunit A OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=addA PE=3 SV=1
Length = 1230
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKC--- 157
E DVV + ++K +E +V G+ F M LN YLL + K ++PK
Sbjct: 781 EQEDVVRLMTIHSSKGLEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRIS 840
Query: 158 -PLLKQLAKRSRQKMEL 173
P L +A + + + EL
Sbjct: 841 YPTLPLIAMKKKLRREL 857
>sp|Q63EM2|ADDA_BACCZ ATP-dependent helicase/nuclease subunit A OS=Bacillus cereus
(strain ZK / E33L) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|A9VJ02|ADDA_BACWK ATP-dependent helicase/nuclease subunit A OS=Bacillus
weihenstephanensis (strain KBAB4) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|Q81TW1|ADDA_BACAN ATP-dependent helicase/nuclease subunit A OS=Bacillus anthracis
GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|Q73C23|ADDA_BACC1 ATP-dependent helicase/nuclease subunit A OS=Bacillus cereus
(strain ATCC 10987) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|A0RAX7|ADDA_BACAH ATP-dependent helicase/nuclease subunit A OS=Bacillus thuringiensis
(strain Al Hakam) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|Q6HM43|ADDA_BACHK ATP-dependent helicase/nuclease subunit A OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|B7JDU4|ADDA_BACC0 ATP-dependent helicase/nuclease subunit A OS=Bacillus cereus
(strain AH820) GN=addA PE=3 SV=1
Length = 1240
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 789 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 848
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 849 YTTLSQLAIKRKMKMEL 865
>sp|Q81GP9|ADDA_BACCR ATP-dependent helicase/nuclease subunit A OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|B7HZR5|ADDA_BACC7 ATP-dependent helicase/nuclease subunit A OS=Bacillus cereus
(strain AH187) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|B7IL84|ADDA_BACC2 ATP-dependent helicase/nuclease subunit A OS=Bacillus cereus
(strain G9842) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|B9ITE9|ADDA_BACCQ ATP-dependent helicase/nuclease subunit A OS=Bacillus cereus
(strain Q1) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|B7HGP9|ADDA_BACC4 ATP-dependent helicase/nuclease subunit A OS=Bacillus cereus
(strain B4264) GN=addA PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 ETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNP----K 156
E DVV + +K +E +V V G+ F L +LLH + ++P K
Sbjct: 790 EQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIK 849
Query: 157 CPLLKQLAKRSRQKMEL 173
L QLA + + KMEL
Sbjct: 850 YTTLSQLAIKRKMKMEL 866
>sp|B4F1Q2|KAD_PROMH Adenylate kinase OS=Proteus mirabilis (strain HI4320) GN=adk PE=3
SV=1
Length = 214
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVENRDDVTGEELTTRKDDQEETV 164
>sp|A8AJW9|KAD_CITK8 Adenylate kinase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC
4225-83 / SGSC4696) GN=adk PE=3 SV=1
Length = 214
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
>sp|Q8TYC0|ECR1_METKA Probable exosome complex RNA-binding protein 1 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0382 PE=3 SV=1
Length = 239
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVET--------G 103
Y P+ GD V+G+V ++ +D+ + PA+L A ++ +ET G
Sbjct: 62 YRPSPGDFVVGIVEEVKFSSWLIDVRAPLPAILH---VSNALEEEVDLIETDLSRYYRPG 118
Query: 104 DVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQL 163
DV+ + + E+ ++ +G L G ++ +++ K ++K L
Sbjct: 119 DVITAVVREVDPVQRVELSLLEDDAPTR-LGRLQGGQVVEIDPVKVPRVIGRKGSMIKML 177
Query: 164 AKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221
+ ++ +G NG+I++R R ELL+ I + H+R L
Sbjct: 178 KR--VLGCDIVVGANGRIYVRAREEPKKER--------ELLAVRAIREIERRSHLRGL 225
>sp|A6T5N7|KAD_KLEP7 Adenylate kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain
ATCC 700721 / MGH 78578) GN=adk PE=3 SV=1
Length = 214
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
>sp|B5Y0N3|KAD_KLEP3 Adenylate kinase OS=Klebsiella pneumoniae (strain 342) GN=adk PE=3
SV=1
Length = 214
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
>sp|A4W7F8|KAD_ENT38 Adenylate kinase OS=Enterobacter sp. (strain 638) GN=adk PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
>sp|Q3Z4S5|KAD_SHISS Adenylate kinase OS=Shigella sonnei (strain Ss046) GN=adk PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
>sp|Q83M40|KAD_SHIFL Adenylate kinase OS=Shigella flexneri GN=adk PE=3 SV=4
Length = 214
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
>sp|B7MDZ6|KAD_ECO45 Adenylate kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC)
GN=adk PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
>sp|Q0T7B1|KAD_SHIF8 Adenylate kinase OS=Shigella flexneri serotype 5b (strain 8401)
GN=adk PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
>sp|Q325C2|KAD_SHIBS Adenylate kinase OS=Shigella boydii serotype 4 (strain Sb227)
GN=adk PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 94 KKNPPKVETGDVVAGKLLTANKDMESEMV 122
K NPPKVE D V G+ LT KD + E V
Sbjct: 136 KFNPPKVEGKDDVTGEELTTRKDDQEETV 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,486,998
Number of Sequences: 539616
Number of extensions: 3321431
Number of successful extensions: 7688
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 7596
Number of HSP's gapped (non-prelim): 96
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)