Query psy230
Match_columns 222
No_of_seqs 142 out of 649
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 21:12:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nn6_G Exosome complex exonucl 100.0 2.5E-62 8.5E-67 430.9 20.2 216 1-218 43-288 (289)
2 2ba0_A Archeal exosome RNA bin 100.0 1.2E-53 4.1E-58 365.5 17.4 205 1-219 6-212 (229)
3 2ja9_A Exosome complex exonucl 100.0 5.1E-52 1.8E-56 341.9 16.3 169 50-220 1-173 (175)
4 2z0s_A Probable exosome comple 100.0 4.5E-52 1.5E-56 357.0 13.1 208 1-220 13-226 (235)
5 2je6_I RRP4, exosome complex R 100.0 1.1E-51 3.8E-56 357.5 12.6 208 1-221 20-234 (251)
6 2nn6_H Exosome complex exonucl 100.0 1.7E-44 5.8E-49 320.1 13.0 202 1-219 43-255 (308)
7 3m7n_A Putative uncharacterize 99.9 1.2E-27 4E-32 197.4 13.5 132 1-145 5-154 (179)
8 2nn6_I 3'-5' exoribonuclease C 99.9 9E-27 3.1E-31 196.5 9.1 142 1-149 23-186 (209)
9 2k52_A Uncharacterized protein 98.7 1.3E-07 4.5E-12 67.2 9.1 70 53-125 2-72 (80)
10 2khi_A 30S ribosomal protein S 98.6 2.8E-07 9.7E-12 70.0 9.0 83 43-125 16-102 (115)
11 2khj_A 30S ribosomal protein S 98.5 2.2E-07 7.6E-12 69.8 7.6 75 51-125 26-102 (109)
12 2k4k_A GSP13, general stress p 98.5 4.1E-07 1.4E-11 70.6 8.3 73 53-125 4-78 (130)
13 2cqo_A Nucleolar protein of 40 98.5 2.7E-07 9.3E-12 70.7 6.2 75 51-125 17-96 (119)
14 2eqs_A ATP-dependent RNA helic 98.4 4.4E-07 1.5E-11 67.6 6.8 74 51-125 7-85 (103)
15 1go3_E DNA-directed RNA polyme 98.4 1E-06 3.4E-11 72.1 8.8 80 51-136 76-173 (187)
16 1kl9_A Eukaryotic translation 98.4 8.5E-07 2.9E-11 72.8 8.2 75 51-125 10-88 (182)
17 2a19_A EIF-2- alpha, eukaryoti 98.4 1.4E-06 4.8E-11 71.0 9.1 75 51-125 10-88 (175)
18 3aev_A Translation initiation 98.3 2E-06 7E-11 74.8 9.1 79 47-125 2-84 (275)
19 1wi5_A RRP5 protein homolog; S 98.2 5.6E-06 1.9E-10 63.0 8.4 74 52-125 17-94 (119)
20 1q8k_A Eukaryotic translation 98.1 8.6E-06 2.9E-10 71.9 9.5 74 52-125 9-86 (308)
21 4ayb_E DNA-directed RNA polyme 98.1 1.7E-05 5.9E-10 64.3 9.8 80 51-136 76-172 (180)
22 1luz_A Protein K3, protein K2; 98.1 6.5E-06 2.2E-10 59.7 6.2 71 53-125 8-83 (88)
23 3cw2_C Translation initiation 98.0 4.1E-06 1.4E-10 72.5 4.6 77 49-125 4-84 (266)
24 2c35_B Human RPB7, DNA-directe 98.0 1.5E-05 5.1E-10 64.3 7.3 83 51-136 76-171 (172)
25 1y14_B B16, RPB7, DNA-directed 97.8 8.3E-05 2.8E-09 59.9 8.0 83 51-136 78-171 (171)
26 3h0g_G DNA-directed RNA polyme 97.7 3.4E-05 1.2E-09 62.4 4.5 83 51-136 79-172 (172)
27 3ayh_B DNA-directed RNA polyme 97.5 0.002 6.7E-08 53.3 12.6 64 51-115 76-159 (203)
28 2b8k_G B16, DNA-directed RNA p 97.5 0.00031 1.1E-08 58.9 7.6 84 51-137 78-172 (215)
29 2ctk_A Vigilin; K homology typ 97.3 0.00026 8.8E-09 52.7 4.4 75 139-219 18-96 (104)
30 2opv_A KHSRP protein; KH domai 97.2 0.00051 1.7E-08 49.0 5.1 58 140-200 16-81 (85)
31 2asb_A Transcription elongatio 97.2 0.00093 3.2E-08 57.2 7.5 68 51-123 2-79 (251)
32 3go5_A Multidomain protein wit 97.2 0.0012 3.9E-08 57.6 8.1 64 55-125 151-216 (285)
33 1hh2_P NUSA, N utilization sub 97.1 0.0014 4.8E-08 58.6 8.7 67 51-123 129-196 (344)
34 4aid_A Polyribonucleotide nucl 97.1 6.5E-05 2.2E-09 73.2 0.0 74 52-125 633-707 (726)
35 1vig_A Vigilin; RNA-binding pr 97.1 0.00078 2.7E-08 46.5 5.5 58 140-203 7-68 (71)
36 2ctl_A Vigilin; K homology typ 97.1 0.00045 1.5E-08 50.7 4.5 60 139-201 18-84 (97)
37 3psi_A Transcription elongatio 97.1 0.001 3.5E-08 68.1 8.0 74 52-125 898-974 (1219)
38 1k0r_A NUSA; two component arr 96.8 0.0032 1.1E-07 56.6 7.6 69 50-123 124-200 (366)
39 1x4m_A FAR upstream element bi 96.7 0.0028 9.6E-08 45.9 5.8 61 139-202 16-84 (94)
40 3u1k_A Polyribonucleotide nucl 96.5 0.0014 4.7E-08 63.0 3.6 60 140-204 569-628 (630)
41 3cdi_A Polynucleotide phosphor 96.4 0.0005 1.7E-08 67.0 0.0 74 52-125 623-697 (723)
42 3psf_A Transcription elongatio 96.4 0.00054 1.8E-08 69.1 0.0 74 52-125 901-977 (1030)
43 2ctm_A Vigilin; K homology typ 96.4 0.0033 1.1E-07 45.8 4.1 58 140-200 19-81 (95)
44 2ckz_B C25, DNA-directed RNA p 96.3 0.049 1.7E-06 45.5 11.8 66 50-115 75-155 (218)
45 1e3p_A Guanosine pentaphosphat 96.3 0.00042 1.4E-08 67.8 -1.1 74 52-125 663-741 (757)
46 3bzc_A TEX; helix-turn-helix, 96.3 0.0012 4.2E-08 64.8 1.9 73 53-125 651-725 (785)
47 2bx2_L Ribonuclease E, RNAse E 96.1 0.047 1.6E-06 51.2 11.7 71 53-123 42-125 (517)
48 1we8_A Tudor and KH domain con 96.0 0.0047 1.6E-07 45.6 3.5 58 140-203 17-82 (104)
49 2cpq_A FragIle X mental retard 95.7 0.025 8.7E-07 41.0 6.1 66 135-202 10-79 (91)
50 2hh3_A KH-type splicing regula 95.4 0.021 7.3E-07 42.3 5.1 58 140-200 13-76 (106)
51 2ctj_A Vigilin; K homology typ 94.3 0.044 1.5E-06 39.8 4.1 58 140-203 19-81 (95)
52 2yqr_A KIAA0907 protein; struc 94.2 0.08 2.8E-06 40.1 5.5 70 131-205 7-97 (119)
53 1k1g_A SF1-BO isoform; splicin 94.0 0.093 3.2E-06 40.4 5.6 51 147-202 22-94 (131)
54 2jvz_A KH type-splicing, FAR u 93.8 0.048 1.7E-06 42.5 3.8 56 140-198 93-154 (164)
55 3go5_A Multidomain protein wit 93.8 0.31 1.1E-05 42.1 9.2 61 54-125 4-64 (285)
56 2p2r_A Poly(RC)-binding protei 93.7 0.092 3.1E-06 36.1 4.6 55 141-198 8-68 (76)
57 2hh2_A KH-type splicing regula 93.6 0.13 4.3E-06 38.0 5.6 58 140-200 9-75 (107)
58 3d0f_A Penicillin-binding 1 tr 93.6 0.25 8.5E-06 36.1 7.2 58 52-109 29-93 (106)
59 1dtj_A RNA-binding neurooncolo 93.6 0.12 3.9E-06 35.4 5.0 57 140-202 5-70 (76)
60 1zzk_A Heterogeneous nuclear r 93.3 0.15 5.3E-06 35.5 5.3 56 141-202 10-71 (82)
61 2axy_A Poly(RC)-binding protei 92.7 0.22 7.4E-06 34.0 5.3 55 141-201 8-66 (73)
62 1j5k_A Heterogeneous nuclear r 92.7 0.15 5.1E-06 36.2 4.6 57 140-202 16-78 (89)
63 2jvz_A KH type-splicing, FAR u 92.4 0.28 9.4E-06 38.1 6.2 57 141-200 5-69 (164)
64 1x4n_A FAR upstream element bi 92.3 0.28 9.4E-06 35.0 5.7 51 140-193 17-73 (92)
65 1ec6_A RNA-binding protein NOV 92.3 0.21 7.1E-06 35.2 4.9 58 140-203 5-71 (87)
66 1wvn_A Poly(RC)-binding protei 92.2 0.16 5.5E-06 35.4 4.2 58 140-203 8-71 (82)
67 2cte_A Vigilin; K homology typ 91.8 0.092 3.1E-06 37.8 2.6 58 140-203 19-80 (94)
68 3krm_A Insulin-like growth fac 91.7 0.14 4.9E-06 39.8 3.8 51 141-194 88-146 (163)
69 2bl5_A MGC83862 protein, quaki 89.8 0.46 1.6E-05 37.0 5.0 55 147-203 17-97 (140)
70 1j4w_A FUSE binding protein; s 85.8 1 3.6E-05 35.3 5.0 56 140-198 106-170 (174)
71 2id0_A Exoribonuclease 2; RNAs 85.8 1.9 6.4E-05 41.3 7.6 71 53-123 555-642 (644)
72 2e3u_A PH-DIM2P, hypothetical 85.4 1.3 4.4E-05 36.8 5.5 60 140-201 36-100 (219)
73 2bh8_A 1B11; transcription, mo 83.8 3 0.0001 30.1 6.3 38 53-90 58-95 (101)
74 2jzx_A Poly(RC)-binding protei 82.8 0.77 2.6E-05 35.5 2.9 57 140-202 91-154 (160)
75 2anr_A Neuro-oncological ventr 81.5 2 6.8E-05 33.7 5.0 57 140-202 106-170 (178)
76 2dgr_A Ring finger and KH doma 79.3 2.2 7.4E-05 29.8 4.0 58 141-201 13-73 (83)
77 3krm_A Insulin-like growth fac 77.8 3.4 0.00012 31.8 5.1 56 140-198 5-67 (163)
78 1j4w_A FUSE binding protein; s 77.3 4.5 0.00015 31.5 5.8 45 140-186 5-55 (174)
79 2jzx_A Poly(RC)-binding protei 77.2 3.8 0.00013 31.4 5.3 44 141-186 8-55 (160)
80 2anr_A Neuro-oncological ventr 76.8 4 0.00014 31.9 5.4 57 140-199 8-73 (178)
81 2rf4_A DNA-directed RNA polyme 74.5 9.5 0.00032 31.2 7.2 75 43-117 116-203 (214)
82 2vnu_D Exosome complex exonucl 71.3 6.5 0.00022 38.3 6.3 66 58-123 671-759 (760)
83 4aid_A Polyribonucleotide nucl 69.0 1.3 4.3E-05 43.2 0.7 59 140-203 572-630 (726)
84 2wp8_J Exosome complex exonucl 62.9 16 0.00055 36.7 7.3 67 57-123 887-976 (977)
85 1tua_A Hypothetical protein AP 62.5 13 0.00046 30.0 5.6 69 148-220 108-177 (191)
86 3i4o_A Translation initiation 56.3 32 0.0011 23.8 5.9 50 60-112 16-66 (79)
87 2dgy_A MGC11102 protein; EIF-1 56.2 57 0.0019 23.9 8.3 56 52-112 10-66 (111)
88 2oqk_A Putative translation in 55.2 22 0.00075 26.3 5.3 55 52-111 27-82 (117)
89 2ctf_A Vigilin; K homology typ 55.1 17 0.00058 26.1 4.6 43 142-186 31-75 (102)
90 2e3u_A PH-DIM2P, hypothetical 54.4 24 0.00083 28.9 5.9 69 148-220 139-208 (219)
91 1y71_A Kinase-associated prote 53.7 17 0.00058 27.6 4.4 32 54-85 8-52 (130)
92 1l6x_B Minimized B-domain of p 52.3 15 0.00052 21.3 3.0 21 198-218 12-32 (34)
93 3v2d_0 50S ribosomal protein L 50.4 31 0.0011 24.3 5.0 46 2-47 33-83 (85)
94 1d7q_A Translation initiation 48.4 91 0.0031 24.0 8.0 55 53-112 27-82 (143)
95 1ah9_A IF1, initiation factor 48.2 34 0.0012 22.7 4.9 49 60-111 8-57 (71)
96 1rhy_A IGPD, imidazole glycero 47.5 31 0.0011 28.2 5.3 81 107-201 5-88 (202)
97 2p9r_A Alpha-2-M, alpha-2-macr 47.1 20 0.0007 25.0 3.8 35 95-129 8-48 (102)
98 3r8s_W 50S ribosomal protein L 46.2 29 0.00099 23.9 4.3 46 2-47 24-75 (76)
99 3n89_A Defective in GERM LINE 45.9 23 0.00079 31.6 4.8 61 139-202 187-259 (376)
100 2k75_A Uncharacterized protein 44.9 81 0.0028 22.4 7.1 22 100-123 60-84 (106)
101 1j3m_A The conserved hypotheti 44.3 34 0.0012 25.1 4.9 45 140-190 53-98 (129)
102 1q9u_A Uncharacterized protein 43.2 35 0.0012 25.0 4.8 45 140-190 56-101 (130)
103 3qby_A Hepatoma-derived growth 40.0 11 0.00037 26.8 1.4 18 96-113 2-19 (94)
104 2zjr_T 50S ribosomal protein L 39.8 37 0.0013 24.2 4.1 47 2-48 33-84 (91)
105 3cdi_A Polynucleotide phosphor 38.0 6.8 0.00023 38.1 0.0 50 139-190 561-610 (723)
106 1jt8_A EIF-1A, probable transl 37.1 33 0.0011 24.9 3.6 59 52-114 13-73 (102)
107 2jsx_A Protein NAPD; TAT, proo 36.7 88 0.003 22.1 5.9 56 139-204 9-66 (95)
108 1xjv_A Protection of telomeres 35.8 86 0.0029 26.4 6.7 38 84-123 52-92 (294)
109 4fu6_A PC4 and SFRS1-interacti 34.8 12 0.0004 28.9 0.9 19 94-112 17-35 (153)
110 3iuw_A Activating signal coint 34.5 55 0.0019 22.8 4.3 42 94-142 32-77 (83)
111 1a62_A RHO; transcription term 29.5 36 0.0012 25.6 2.9 36 33-68 63-105 (130)
112 3dm3_A Replication factor A; p 27.9 1.6E+02 0.0055 20.8 8.3 24 99-123 66-91 (105)
113 1h3z_A Hypothetical 62.8 kDa p 27.4 35 0.0012 24.5 2.4 16 97-112 4-19 (109)
114 2ae8_A IGPD, imidazoleglycerol 27.3 23 0.00079 29.3 1.5 76 107-201 31-108 (221)
115 2z1c_A Hydrogenase expression/ 26.8 1E+02 0.0034 21.0 4.5 39 62-110 7-46 (75)
116 3d9y_A Profilin; yeast, actin- 26.7 80 0.0027 23.2 4.4 20 168-187 16-36 (127)
117 2nn6_I 3'-5' exoribonuclease C 26.6 85 0.0029 25.3 4.8 33 54-86 136-170 (209)
118 1ri0_A Hepatoma-derived growth 26.5 36 0.0012 24.7 2.3 16 97-112 17-32 (110)
119 3ers_X TRNA-binding protein YG 26.5 44 0.0015 24.7 2.8 11 58-68 13-23 (118)
120 2bh8_A 1B11; transcription, mo 26.4 1.7E+02 0.0058 20.5 7.1 59 56-115 13-74 (101)
121 1e3p_A Guanosine pentaphosphat 26.1 4.8 0.00016 39.3 -3.3 48 140-189 600-647 (757)
122 2jpq_A UPF0352 protein VP2129; 25.7 81 0.0028 22.0 3.8 32 191-222 34-67 (83)
123 2juw_A UPF0352 protein SO_2176 24.7 87 0.003 21.7 3.8 32 191-222 34-67 (80)
124 1hr0_W Translation initiation 24.1 23 0.00079 23.6 0.8 47 60-111 9-58 (71)
125 3v2d_O 50S ribosomal protein L 23.8 2.3E+02 0.0077 21.1 7.0 45 43-114 22-66 (122)
126 1zda_A Mini protein A domain, 23.7 23 0.00079 21.1 0.6 20 198-217 17-36 (38)
127 1o7i_A SSB, SSO2364, single st 23.6 2E+02 0.0069 20.5 7.4 23 99-123 62-87 (119)
128 2l89_A PWWP domain-containing 23.3 26 0.00088 25.4 1.0 16 98-113 4-19 (108)
129 2jr2_A UPF0352 protein CPS_261 23.1 65 0.0022 22.1 2.9 31 192-222 35-66 (76)
130 1yez_A MM1357; MAR30, autostru 22.5 1.6E+02 0.0055 18.9 6.2 37 33-76 30-66 (68)
131 3qwo_C Motavizumab epitope sca 22.4 80 0.0027 20.4 3.0 23 196-218 11-33 (57)
132 2nvm_A FDXN element excision c 22.4 52 0.0018 24.8 2.5 17 170-189 75-91 (126)
133 2kbn_A Conserved protein; nucl 22.2 2.1E+02 0.0073 20.2 7.8 26 96-123 57-85 (109)
134 3k2z_A LEXA repressor; winged 22.2 1.8E+02 0.0062 22.5 6.0 35 33-68 155-193 (196)
135 2z0s_A Probable exosome comple 21.2 1.1E+02 0.0037 25.0 4.5 31 53-83 114-145 (235)
136 2f1d_A IGPD 1, imidazoleglycer 21.1 42 0.0014 27.5 1.9 77 107-201 12-90 (207)
137 2eqs_A ATP-dependent RNA helic 21.1 1E+02 0.0034 21.6 3.8 28 95-123 5-32 (103)
138 3l48_A Outer membrane usher pr 20.9 28 0.00095 24.7 0.7 21 170-190 34-54 (94)
139 1yvc_A MRR5; structure, autost 20.8 1.8E+02 0.0062 18.8 5.6 22 55-76 47-68 (70)
140 3pr9_A FKBP-type peptidyl-prol 20.8 1.3E+02 0.0045 23.0 4.7 29 52-80 101-134 (157)
141 3nul_A Profilin I; cytoskeleto 20.5 1.3E+02 0.0045 22.2 4.5 21 168-188 18-38 (130)
142 2xet_A CAF1A usher, F1 capsule 20.2 30 0.001 23.8 0.8 18 172-189 31-48 (89)
No 1
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=2.5e-62 Score=430.88 Aligned_cols=216 Identities=43% Similarity=0.841 Sum_probs=195.9
Q ss_pred CCCCeecCCCC---------------------CCeee--CCCeEEeCCEEEEEEeeEEEEecCc------EEEEEccccc
Q psy230 1 MAGDTLSLNAE---------------------PRLIL--GPGLRRESSAILVSQSGILRHAKPF------TYYVDYIQRR 51 (222)
Q Consensus 1 ~PGd~l~~~~~---------------------~~~~~--G~G~y~~~~~i~as~~G~l~~~~~~------~v~V~~~~~~ 51 (222)
+|||.|+.... .+|++ |+|||.++++|+|+++|.++.++++ ++||+|.+++
T Consensus 43 lPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~~~~~I~as~aG~l~~~~~~~~~~~~~v~V~~~~~r 122 (289)
T 2nn6_G 43 LPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKR 122 (289)
T ss_dssp CSSEEECCSCSCCEECSSEEECC-----------------------CCCEEECSCCEEEEECCTTTSSCCEEEEECCCSS
T ss_pred eCCCCcCccccccccccccccccccccccccCcceEEccCCCeEEECCEEEEEEeEeEEeccCCccCccceEEEEecCCC
Confidence 69999986421 16888 9999999999999999999988643 8999999999
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEecCCCCeeEEEEecCCCccc
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEF 131 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~ 131 (222)
|+|++||+|||+|+++++++|+|||++++.|+|+.++|+|+|++||++|++||+|||||++++++++++|||+++++|++
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc~~~~~k~~ 202 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRAN 202 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSCCEEECSBTTTTBC
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEcCCCCceEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccc-CCceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhhcCCHHHHH
Q psy230 132 IMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEIL 210 (222)
Q Consensus 132 ~~G~L-~~G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e~~~~~~~~ 210 (222)
+||+| ++|++|+|+++++|||++++++||++|++ +++|||+||+||||||++++++++++++|||++||.++.+|++
T Consensus 203 ~lG~L~~~G~l~~Vs~~lvrrl~~~~~~~l~~L~~--~~~~eI~vG~NG~IWI~~~~~~~~~~i~~aI~~~e~~~~~q~~ 280 (289)
T 2nn6_G 203 GMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGK--LYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRK 280 (289)
T ss_dssp CCCSCCSSCEEECCCHHHHHHHHCTTCSHHHHTTC--SSSCCCEEETTTEEEECCSSHHHHHHHHHHHHHTTSSCTTTHH
T ss_pred cCCEecCCeEEEEEChHHhhhhhcCchhHHHHhcc--cCCeEEEEECCcEEEEecCChhHHHHHHHHHHHhhcCCHHHHH
Confidence 99999 99999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy230 211 NLCESIHI 218 (222)
Q Consensus 211 ~~~~~~~~ 218 (222)
+|++++++
T Consensus 281 ~~~~~~~~ 288 (289)
T 2nn6_G 281 QIFSRLAE 288 (289)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999975
No 2
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=1.2e-53 Score=365.50 Aligned_cols=205 Identities=21% Similarity=0.309 Sum_probs=186.2
Q ss_pred CCCCeecCCCCCCeeeCCCeEEeCCEEEEEEeeEEEEecCcEEEEEccccccCCCCCCEEEEEEEEEecceEEEEECCCC
Q psy230 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHD 80 (222)
Q Consensus 1 ~PGd~l~~~~~~~~~~G~G~y~~~~~i~as~~G~l~~~~~~~v~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~ 80 (222)
+|||.|+. ++|.+|+|||.++++|+||++|.++.++ +.+||.|.+++|.|++||+|+|+|+++.++.|+|||++++
T Consensus 6 ~PGd~l~~---~~~~~G~Gty~~~g~i~as~~G~v~~~~-~~v~V~p~~~~y~p~~GDiV~G~V~~v~~~~a~V~I~~~~ 81 (229)
T 2ba0_A 6 LPGDLLST---NPRAAGYGTYVEGGKVYAKIIGLFDQTE-THVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDIYSPY 81 (229)
T ss_dssp CTTCEEES---CTTSBCTTEEEETTEEEECSSEEEEECS-SCEEEEECSSSCCCCTTCEEEEEEEEECSSEEEEECSSSS
T ss_pred cCCCCccc---CCeEecCCEEEeCCEEEEEEEEEEEEeC-CEEEEEeCCCcccCCCCCEEEEEEEEEeCCeEEEEeCCCe
Confidence 69999984 3589999999999999999999999885 6789999999999999999999999999999999999999
Q ss_pred Ceeeeccccc--cccccCCcCCCCCCEEEEEEEecCCCCeeEEEEecCCCccccCcccCCceEEEechhhhhhccCCChh
Q psy230 81 PAVLSYLAFE--GATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCP 158 (222)
Q Consensus 81 ~a~L~~~~f~--gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~l~~v~~~~~~rl~~~~~~ 158 (222)
.|+||.++|. +++++++++|++||+|+|||+++++++++.|||++ ++||+|++|++++++|.+++|+++++++
T Consensus 82 ~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~-----~~lG~L~~G~v~~vs~~~v~rl~~~~~~ 156 (229)
T 2ba0_A 82 QAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD-----RICRPIRFGRIVAINPARVPRVIGKKGS 156 (229)
T ss_dssp CEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCS-----SSCEEESSSEEEECCGGGHHHHHCGGGH
T ss_pred EEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEcc-----ccCCcccCCEEEEECHHHhHHHhcCCch
Confidence 9999999987 57889999999999999999999999999999965 8999999999999999999999999999
Q ss_pred HHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy230 159 LLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIR 219 (222)
Q Consensus 159 ~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e~~~~~~~~~~~~~~~~~ 219 (222)
|+++|++ +++||||+|+||||||++++. +++++++||+++|..+ +..++.+++.++
T Consensus 157 ~l~~l~~--~~~~ei~vG~NG~IWi~~~~~-~~~~~~~ai~~~e~~~--~~~~l~~~v~~~ 212 (229)
T 2ba0_A 157 MIKLLKS--ELDVQIVVGQNGLIWVNGDRR-KVSIAEEAIYLIEQEA--HTEGLTDRVAEF 212 (229)
T ss_dssp HHHHHHH--HHTCEEEECTTSEEEEESCHH-HHHHHHHHHHHHHHCS--CCSSHHHHHHHH
T ss_pred HHHHhcc--cCCeEEEEECCcEEEEeCCch-hHHHHHHHHHHHHhhh--hhhhHHHHHHHH
Confidence 9999999 999999999999999997665 8999999999999733 233344444333
No 3
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=5.1e-52 Score=341.94 Aligned_cols=169 Identities=37% Similarity=0.723 Sum_probs=162.7
Q ss_pred cccCCCCCCEEEEEEEEEecceEEEEECC-CCCeeeeccccccccccCCcCCCCCCEEEEEEEecCCCCeeEEEEecC-C
Q psy230 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS-R 127 (222)
Q Consensus 50 ~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~-~ 127 (222)
+||+|++||+|||+|+++.+++|+|||++ ++.|.||.++|+|++++||++|++||+|+|||++++.+++++|||+|+ +
T Consensus 1 krY~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc~~~~~ 80 (175)
T 2ja9_A 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTT 80 (175)
T ss_dssp CCCCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSCTTT
T ss_pred CCccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEecCCCceEEEeccccc
Confidence 58999999999999999999999999999 999999999999999999999999999999999999999999999995 7
Q ss_pred CccccCcccCCceEEEechhhhhhccCC-ChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHH-hhcCC
Q psy230 128 GKEFIMGILNDGYLLHTSISLCRKLLNP-KCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMS-CELLS 205 (222)
Q Consensus 128 ~~~~~~G~L~~G~l~~v~~~~~~rl~~~-~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~-~e~~~ 205 (222)
+|+++||+|++|++|+|||+++|||+++ +++||++|++ +++|||++|+||||||+++++++++++++||++ ||.++
T Consensus 81 ~r~~~lG~L~~G~l~~v~~~~v~rl~~~~~~~~l~~l~~--~~~~ei~vG~NG~IWi~~~~~~~~~~v~~aI~~~~~~~~ 158 (175)
T 2ja9_A 81 GRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAA--HTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKND 158 (175)
T ss_dssp CSCTTCEEECSCEEEECCHHHHHHHHHCTTCCHHHHHHT--TCCCEEEEETTTEEEEECSSHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCcCcCCCEEEEEcHHHhhHHhcCCCcchHHhhhc--cCCeEEEEECCcEEEEecCCHHHHHHHHHHHHHHhccCC
Confidence 8999999999999999999999999984 6679999999 999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHh
Q psy230 206 YEEILNLCESIHIRF 220 (222)
Q Consensus 206 ~~~~~~~~~~~~~~l 220 (222)
.+|+++|++++.+.+
T Consensus 159 ~~~~~~~~~~~~~~~ 173 (175)
T 2ja9_A 159 TAAFKDIAKRQFKEI 173 (175)
T ss_dssp GGGHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998765
No 4
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=4.5e-52 Score=356.98 Aligned_cols=208 Identities=22% Similarity=0.234 Sum_probs=148.6
Q ss_pred CCCCeecCCCCCCeeeCCCeEEeCCEEEEEEeeEEEEecC-cEEEEEccccccCCCCCCEEEEEEEEEecceEEEEECCC
Q psy230 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKP-FTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSH 79 (222)
Q Consensus 1 ~PGd~l~~~~~~~~~~G~G~y~~~~~i~as~~G~l~~~~~-~~v~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~ 79 (222)
+|||.|+.. +|.+|+|||.+++.|+||++|.+..+++ +.+||+|.+++|.|++||+|+|+|+++.++.|+|||+++
T Consensus 13 ~PGd~l~~~---~~~~G~Gty~~~~~I~Asv~G~v~~~~~~~~vsV~p~~~~y~p~~GDiV~G~V~~v~~~~~~V~I~~~ 89 (235)
T 2z0s_A 13 VPGEPLPEE---VEASPPYVIDYKGVKRATVVGLLREKGDGGGRAFVKLKEIYVPQAGDVVIGLIQSVGIMNWFVDINSP 89 (235)
T ss_dssp --------------------------------------------------CCCCCCTTCCEEEEEEEECSSEEEEECSSS
T ss_pred eCCCCcccC---ceEcCCCEEEECCEEEEEEeEEEEEeCCccEEEEEeCCCccCCCCCCEEEEEEEEEeCCeEEEEeCCC
Confidence 699999853 5999999999999999999999987753 378999999999999999999999999999999999999
Q ss_pred CCeeeecccccc-----ccccCCcCCCCCCEEEEEEEecCCCCeeEEEEecCCCccccCcccCCceEEEechhhhhhccC
Q psy230 80 DPAVLSYLAFEG-----ATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLN 154 (222)
Q Consensus 80 ~~a~L~~~~f~g-----atk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~l~~v~~~~~~rl~~ 154 (222)
+.|+||.++|.+ ..++++++|++||+|+|||+++++++++.|||+. ++||+|++|++++++|.+++|+++
T Consensus 90 ~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~-----~~lG~l~gG~vv~vs~~~~~rl~~ 164 (235)
T 2z0s_A 90 YVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQG-----EGLGRIVRGKIVEISPAKVPRVIG 164 (235)
T ss_dssp SCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCS-----SSCEECCSSEEEECCGGGSGGGTC
T ss_pred eEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEec-----ccCccccCCEEEEECHHHhHHHhc
Confidence 999999999875 4578899999999999999999988899999955 899999999999999999999999
Q ss_pred CChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q psy230 155 PKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRF 220 (222)
Q Consensus 155 ~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e~~~~~~~~~~~~~~~~~l 220 (222)
++++||++|++ +++||||+|+||+|||+++++++++++++||++||.. ++..++.+++.++|
T Consensus 165 ~~~~~l~~l~~--~~~~~i~vG~NG~IWi~~~~~~~~~~~~~ai~~~e~~--~~~~~l~~~v~~~l 226 (235)
T 2z0s_A 165 RKMSMLKTLEE--KTECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEE--AYTSGLTKRIIKFI 226 (235)
T ss_dssp GGGHHHHHHHH--HHCCEEEEETTTEEEEECSCHHHHHHHHHHHHHHHHC--SCCTTCHHHHHHHH
T ss_pred CcchHHHHhcc--cCCeEEEEeCCCEEEEecCCHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHH
Confidence 99999999998 8999999999999999999999999999999999983 44555555555544
No 5
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=100.00 E-value=1.1e-51 Score=357.52 Aligned_cols=208 Identities=17% Similarity=0.228 Sum_probs=175.8
Q ss_pred CCCCeecCCCCCCeeeCC--CeEEeCCEEEEEEeeEEEEecCcEEEEEcccc-ccCCCCCCEEEEEEEEEecceEEEEEC
Q psy230 1 MAGDTLSLNAEPRLILGP--GLRRESSAILVSQSGILRHAKPFTYYVDYIQR-RYVPTRGDLVIGVVTSRVGDNYRVDIG 77 (222)
Q Consensus 1 ~PGd~l~~~~~~~~~~G~--G~y~~~~~i~as~~G~l~~~~~~~v~V~~~~~-~Y~P~vGDiVIG~V~~v~~~~~~VdI~ 77 (222)
+|||.|+.. +|.+|+ |||.++++|+||++|.++.++ +.++|.|.++ +|.|++||+|+|+|+++.++.|+|||+
T Consensus 20 ~PGd~l~~~---~~~~G~~~Gty~~~g~i~as~~G~v~~~~-~~v~V~p~~~~~y~p~~GDiV~G~V~~v~~~ga~VdI~ 95 (251)
T 2je6_I 20 VPGELLAEG---EFQIPWSPYILKINSKYYSTVVGLFDVKD-TQFEVIPLEGSFYYPKINDIVIGLVEDVEIYGWVVDIK 95 (251)
T ss_dssp CTTCEEEEE---CCCCCCCTTEEEETTEEEECSSEEEEEET-TEEEEEESCCSCCCCCTTCEEEEEEEEECSSEEEEECS
T ss_pred cCCCCCccC---CeeeCCCCCEEEECCEEEEEEEEEEEEeC-CEEEEEECCCcccCCCCCCEEEEEEEEEeCceEEEEcC
Confidence 699999853 589999 999999999999999999885 7889999887 899999999999999999999999999
Q ss_pred CCCCeeeecccccc-cc---ccCCcCCCCCCEEEEEEEecCCCCeeEEEEecCCCccccCcccCCceEEEechhhhhhcc
Q psy230 78 SHDPAVLSYLAFEG-AT---KKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLL 153 (222)
Q Consensus 78 ~~~~a~L~~~~f~g-at---k~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~l~~v~~~~~~rl~ 153 (222)
+++.|+||.++|.+ .. ++++++|++||+|+|||+++++++++.|||++ .+||+|++|+++++++.+++|++
T Consensus 96 ~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~-----~~lG~L~~G~v~~vs~~~v~rl~ 170 (251)
T 2je6_I 96 APYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKG-----KDLGRVSNGIVIDIMPVKVPRVI 170 (251)
T ss_dssp SSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCS-----TTCEECCSSCEEECCGGGHHHHH
T ss_pred CCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEcc-----ccCCcccCCEEEEECHHHhHHHh
Confidence 99999999998874 23 67888999999999999999998999999965 89999999999999999999999
Q ss_pred CCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q psy230 154 NPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFL 221 (222)
Q Consensus 154 ~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e~~~~~~~~~~~~~~~~~l~ 221 (222)
+++++||++|++ +++||||||+||||||+++++++++++++||++||. ++|..++.+++.++|.
T Consensus 171 ~~~~~~l~~l~~--~~~~ei~vG~NG~IWi~~~~~~~~~~~~~aI~~~e~--~~~~~~l~~~v~~~l~ 234 (251)
T 2je6_I 171 GKNKSMYETLTS--KSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIEN--ESHIKGLTDRIKQFIE 234 (251)
T ss_dssp CGGGHHHHHHHT--TC---CEECTTSEEEC-----CTTCCTHHHHTTTTT--TTTCC-----------
T ss_pred cCcchHHHHhcc--cCCeEEEEECCcEEEEeCCCHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999998 4446666666666553
No 6
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=1.7e-44 Score=320.12 Aligned_cols=202 Identities=20% Similarity=0.316 Sum_probs=163.7
Q ss_pred CCCCeecCCCCCCeeeCCCeEEeCCEEEEEEeeEEEEecCcEEEEEccccccCCCCCCEEEEEEEEEecceEEEEECCCC
Q psy230 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHD 80 (222)
Q Consensus 1 ~PGd~l~~~~~~~~~~G~G~y~~~~~i~as~~G~l~~~~~~~v~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~ 80 (222)
+|||.|+.. ++|.+|+|||.++++|+||++|.++.+ ++++||+|.+++|.|++||+|+|+|+++++++|+|||+++.
T Consensus 43 lPGd~L~~~--~~~~~G~Gty~~~g~I~Asv~G~v~~~-~~~vsV~p~~~rY~P~vGDvViG~Vt~V~~~~a~VdI~s~~ 119 (308)
T 2nn6_H 43 VPGDTITTD--TGFMRGHGTYMGEEKLIASVAGSVERV-NKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRL 119 (308)
T ss_dssp CTTCBCCCC--TTCCBCTTEEECSSSEEECSSEEEEEE-TTEEEEEESSCCCCCCSSBCCCEEEEEEETTEEEEECSSSS
T ss_pred eCCCCCCCC--CCEeecCCeEEECCEEEEEEEEEEEec-CCEEEEeeCCCccCCCCCCEEEEEEEEEeCceEEEEECCCc
Confidence 699999965 479999999999999999999999877 58999999999999999999999999999999999999999
Q ss_pred Ceeeeccc--cccccc---------cCCcCCCCCCEEEEEEEecCCCCeeEEEEecCCCccccCcccCCceEEEechhhh
Q psy230 81 PAVLSYLA--FEGATK---------KNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLC 149 (222)
Q Consensus 81 ~a~L~~~~--f~gatk---------~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~l~~v~~~~~ 149 (222)
.+.++.++ |+++++ +|+++|++||+|+|||+++++++++.|||++ ++||+|++|+++.|++.++
T Consensus 120 ~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~LStr~-----~~LGkL~~G~v~~vs~~lv 194 (308)
T 2nn6_H 120 DSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRS-----LKYGKLGQGVLVQVSPSLV 194 (308)
T ss_dssp CEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEEECCS-----STTCEECSSCEEECCTTSC
T ss_pred CCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEEEecC-----cCCcccCCeEEEEEChhhe
Confidence 99888754 677653 4669999999999999999988999999965 9999999999999999999
Q ss_pred hhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy230 150 RKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIR 219 (222)
Q Consensus 150 ~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e~~~~~~~~~~~~~~~~~ 219 (222)
|++.. ++..+ .++|||++|+||||||++...+......+...+++.++.++. ..+.|+.+.
T Consensus 195 ~r~~~----~l~~l----~~g~eI~vG~NG~IWi~~~~~~~~~~~~~~~~~~~~~~~~~r-~~i~r~~n~ 255 (308)
T 2nn6_H 195 KRQKT----HFHDL----PCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADR-EVISRLRNC 255 (308)
T ss_dssp CCSTT----CSCCC----BTTBEEEEETTTEEEEECCCCC------CCGGGSSCCCHHHH-HHHHHHHHH
T ss_pred echhh----eEecC----CCCcEEEEeCCCEEEEcCCcchhhhhcccccccCCcCCHHHH-HHHHHHHHH
Confidence 98754 45445 579999999999999998754433333345566666666555 445555443
No 7
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.95 E-value=1.2e-27 Score=197.44 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=117.5
Q ss_pred CCCCeecCCCCCCeeeCCCeEEeCCEEEEEEeeEEEEecCcEEEEEcccc-ccCCCCCCEEEEEEEEEecceEEEEECC-
Q psy230 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQR-RYVPTRGDLVIGVVTSRVGDNYRVDIGS- 78 (222)
Q Consensus 1 ~PGd~l~~~~~~~~~~G~G~y~~~~~i~as~~G~l~~~~~~~v~V~~~~~-~Y~P~vGDiVIG~V~~v~~~~~~VdI~~- 78 (222)
+|||.|+.. ++|.+|+|||.++++|+||++|.++.+ ++++||+|.+. +|.|+ ||+|+|+|+++.+..|+|||++
T Consensus 5 ~PGd~l~~~--~~~~~G~Gty~~~~~i~as~~G~v~~~-~~~v~V~~~~~~~y~p~-GdiV~G~V~~V~~~ga~V~I~~v 80 (179)
T 3m7n_A 5 MPGDRIGSA--EEYVKGEGVYEEGGELFAAVAGKLIIK-DRVAKVESISPIPEIVK-GDVVLGRVVDLRNSIALIEVSSK 80 (179)
T ss_dssp CTTCEEEET--TTSEECTTEEEETTEEEESSSEEEEEE-TTEEEEEESSCCCCCCT-TCEEEEEEEEECSSEEEEEEEEE
T ss_pred cCCCCCCCC--CCEeccCCEEEeCCEEEEEEEEEEEEe-CCEEEEEECCCCcccCC-CCEEEEEEEEEeCCcEEEEEccc
Confidence 699999976 479999999999999999999999997 48999999855 69999 9999999999999999999998
Q ss_pred ---------CCCeeeecccccc-ccccCCcCCCCCCEEEEEEEecCCCCeeEEEEecCCCccccCcccC------CceEE
Q psy230 79 ---------HDPAVLSYLAFEG-ATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGILN------DGYLL 142 (222)
Q Consensus 79 ---------~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~------~G~l~ 142 (222)
+..|+||.+++.. ..+++++.|++||+|.|+|++ ..+.||+++ ++||+|. +..|+
T Consensus 81 ~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----~~i~LS~k~-----~~lGvv~a~~~~~g~~m~ 151 (179)
T 3m7n_A 81 KGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----DNLRLSTKE-----EEMGVLRALCSNCKTEMV 151 (179)
T ss_dssp TTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE----TTTEEECCS-----TTCEEEECBCTTTCCBCE
T ss_pred cCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC----CeEEEEEec-----CCCCEEEecccccCCceE
Confidence 8899999988754 457899999999999999998 579999965 9999992 45677
Q ss_pred Eec
Q psy230 143 HTS 145 (222)
Q Consensus 143 ~v~ 145 (222)
+++
T Consensus 152 ~~~ 154 (179)
T 3m7n_A 152 REG 154 (179)
T ss_dssp ECS
T ss_pred ECC
Confidence 766
No 8
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.93 E-value=9e-27 Score=196.50 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=117.7
Q ss_pred CCCCeecCCCCCCeeeCCCeEEeCCEEEEEEeeEEEEec----CcEEEEEcccc-ccCCCCCCEEEEEEEEEecceEEEE
Q psy230 1 MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAK----PFTYYVDYIQR-RYVPTRGDLVIGVVTSRVGDNYRVD 75 (222)
Q Consensus 1 ~PGd~l~~~~~~~~~~G~G~y~~~~~i~as~~G~l~~~~----~~~v~V~~~~~-~Y~P~vGDiVIG~V~~v~~~~~~Vd 75 (222)
+|||.|+.. ++|++|+|||.++++|+|+++|.++.+. .++++|.|.++ +|.|++||+|+|+|+++++..|+||
T Consensus 23 ~PGd~l~~~--~~~~~G~Gty~~~g~I~Asv~G~v~~~~~~~~~~vi~V~p~~~~~y~p~vGDvV~G~V~~v~~~~a~V~ 100 (209)
T 2nn6_I 23 IPGERLCNL--EEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETESQLLPDVGAIVTCKVSSINSRFAKVH 100 (209)
T ss_dssp CTTCEEEET--TTCCCSSSCEEETTEEECCSCSCBCCCBCTTSSBC-CBCCSCCCCCCCCTTCEEEEEEEEECSSEEEEE
T ss_pred cCCCCCCCC--CCeeecCCEEEECCEEEEEEEEEEEEeccCCcccEEEEecCCCCcCCCCCCCEEEEEEEEEECceEEEE
Confidence 699999865 4699999999999999999999987652 25688999876 5999999999999999999999999
Q ss_pred ECC--------CCCeeeeccccc-cccc--cCCcCCCCCCEEEEEEEecCCCC-eeEEEEecCCCccccCccc-----CC
Q psy230 76 IGS--------HDPAVLSYLAFE-GATK--KNPPKVETGDVVAGKLLTANKDM-ESEMVCVDSRGKEFIMGIL-----ND 138 (222)
Q Consensus 76 I~~--------~~~a~L~~~~f~-gatk--~~r~~l~~GDlV~ArV~~~~~~~-~~~Ls~~~~~~~~~~~G~L-----~~ 138 (222)
|++ ++.|+||.+++. ...+ +++.+|++||+|+|+|++++++. .+.||++. .+||++ .+
T Consensus 101 I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~k~-----~~lGVv~A~c~~g 175 (209)
T 2nn6_I 101 ILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAE-----NELGVVVAHSESG 175 (209)
T ss_dssp EEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEECCS-----SSCEECCCBCSSS
T ss_pred ECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEEEec-----CCCcEEEEEcCCC
Confidence 963 456777766553 2334 78899999999999999998765 59999965 999999 35
Q ss_pred ceEEEechhhh
Q psy230 139 GYLLHTSISLC 149 (222)
Q Consensus 139 G~l~~v~~~~~ 149 (222)
..|+++++...
T Consensus 176 ~~m~~~~~~~m 186 (209)
T 2nn6_I 176 IQMVPISWCEM 186 (209)
T ss_dssp CBCEEEETTEE
T ss_pred CEEEEccCCEE
Confidence 78888887544
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.67 E-value=1.3e-07 Score=67.19 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEecCCC-CeeEEEEec
Q psy230 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD-MESEMVCVD 125 (222)
Q Consensus 53 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~~~ 125 (222)
.|++||+|.|+|+++.+..+.|+|+....|.+|.+.+... +. ..|++||.|.|+|.+++.+ +.+.||.+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~--~~-~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISL--RL-ENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSC--CG-GGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcc--cc-eeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 4789999999999999999999999889999998876421 11 5799999999999999876 789999865
No 10
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.57 E-value=2.8e-07 Score=69.95 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=66.9
Q ss_pred EEEEcccc-ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccccc--ccccCCcCCCCCCEEEEEEEecCC-CCe
Q psy230 43 YYVDYIQR-RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEG--ATKKNPPKVETGDVVAGKLLTANK-DME 118 (222)
Q Consensus 43 v~V~~~~~-~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g--atk~~r~~l~~GDlV~ArV~~~~~-~~~ 118 (222)
..+.|... .+.|++||+|.|+|+++.+..+.|+|+....|.+|.+.+.. ..++.+..|++||.|.++|.+++. ...
T Consensus 16 ~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~r 95 (115)
T 2khi_A 16 PRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 95 (115)
T ss_dssp -----CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTE
T ss_pred cccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCE
Confidence 34556544 47899999999999999999999999988999999987643 445677899999999999999986 467
Q ss_pred eEEEEec
Q psy230 119 SEMVCVD 125 (222)
Q Consensus 119 ~~Ls~~~ 125 (222)
+.||++.
T Consensus 96 I~lslk~ 102 (115)
T 2khi_A 96 ISLGLKQ 102 (115)
T ss_dssp EEECCCC
T ss_pred EEEEEEe
Confidence 8888864
No 11
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.54 E-value=2.2e-07 Score=69.78 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=64.5
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCCCC-eeEEEEec
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANKDM-ESEMVCVD 125 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~~~-~~~Ls~~~ 125 (222)
.+.+++||+|.|+|+++.+..+.|+|+....|+||.+.+. ...++.+..|++||.|.|+|.+++.+. .+.||++.
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~ 102 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRA 102 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETTS
T ss_pred hhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 3578999999999999999999999998899999988764 345566778999999999999998764 68888754
No 12
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.49 E-value=4.1e-07 Score=70.63 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=64.7
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCC-CCeeEEEEec
Q psy230 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANK-DMESEMVCVD 125 (222)
Q Consensus 53 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 125 (222)
.+++||+|.|+|+++.+..+.|+|.....|++|.+.+. +...+.+..|++||.|.|+|++++. ...+.||++.
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~ 78 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRA 78 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHH
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEee
Confidence 47899999999999999999999988899999998764 4556677899999999999999987 6789999875
No 13
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=2.7e-07 Score=70.66 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=63.1
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECC-CCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCCC---CeeEEEEec
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANKD---MESEMVCVD 125 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~~---~~~~Ls~~~ 125 (222)
.+.|++||+|.|+|+++.+..++|+|.. ...|+||++.+. ...++....|++||.|.++|++++.. ..+.||++.
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 3789999999999999999999999965 379999998764 34455667899999999999999753 478899865
No 14
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=4.4e-07 Score=67.61 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=62.8
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECC---CCCeeeeccccc--cccccCCcCCCCCCEEEEEEEecCCCCeeEEEEec
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGS---HDPAVLSYLAFE--GATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~---~~~a~L~~~~f~--gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 125 (222)
...|++||++.|+|+++.+..++|+|.. ...|.+|.+.+. ...++.+..|++||.|.++|.+++. ..+.||++.
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~-~~i~LSlk~ 85 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLSMKD 85 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TEEEEESTT
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC-CeeEEEEee
Confidence 3568999999999999999999999996 689999998873 2344556779999999999999987 578888865
No 15
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.40 E-value=1e-06 Score=72.10 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=66.0
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccc-ccc-----------ccCCcCCCCCCEEEEEEEecCCC--
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE-GAT-----------KKNPPKVETGDVVAGKLLTANKD-- 116 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~-gat-----------k~~r~~l~~GDlV~ArV~~~~~~-- 116 (222)
.|.|.+|+++.|+|+++.+..+.|+|+. ..+++|.+.+. ... ++....|++||.|.+||.+++..
T Consensus 76 ~~~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred EEccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 3789999999999999999999999975 89999987653 222 25678899999999999999753
Q ss_pred ----CeeEEEEecCCCccccCccc
Q psy230 117 ----MESEMVCVDSRGKEFIMGIL 136 (222)
Q Consensus 117 ----~~~~Ls~~~~~~~~~~~G~L 136 (222)
+.+.||+++ ++||++
T Consensus 155 ~p~~~~I~lS~k~-----~~LG~~ 173 (187)
T 1go3_E 155 RKRGSKIALTMRQ-----PYLGKL 173 (187)
T ss_dssp ----CEEEEECCS-----TTCEEH
T ss_pred CCCccEEEEEEcC-----CCCCcH
Confidence 367888855 888876
No 16
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.39 E-value=8.5e-07 Score=72.81 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=56.5
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEE--CCCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCCC-CeeEEEEec
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDI--GSHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANKD-MESEMVCVD 125 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI--~~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~~~ 125 (222)
.+.|++||+|.|+|+++.+-.++|+| .....|.+|++.+. +..++.+..|++||.|.++|++++.. ..+.||++.
T Consensus 10 ~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~ 88 (182)
T 1kl9_A 10 HKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 88 (182)
T ss_dssp SSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred ccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 35689999999999999999999999 46689999998874 45677889999999999999999864 578898864
No 17
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.38 E-value=1.4e-06 Score=71.04 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=60.3
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEC--CCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCCC-CeeEEEEec
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIG--SHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANKD-MESEMVCVD 125 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~--~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~~~ 125 (222)
.+.|++||+|.|+|+++.+-.+.|+|. ....|.+|++.+. +..++.+..|++||.|.++|++++.. ..+.||++.
T Consensus 10 ~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~ 88 (175)
T 2a19_A 10 NKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRR 88 (175)
T ss_dssp SSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTT
T ss_pred hcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEe
Confidence 356899999999999999999999994 5689999998874 45677888999999999999999764 578899864
No 18
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.31 E-value=2e-06 Score=74.80 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=65.0
Q ss_pred ccccccCCCCCCEEEEEEEEEecceEEEEEC--CCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCC-CCeeEEE
Q psy230 47 YIQRRYVPTRGDLVIGVVTSRVGDNYRVDIG--SHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANK-DMESEMV 122 (222)
Q Consensus 47 ~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~--~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls 122 (222)
|+...+.|++||+|.|+|+++.+..+.|+|. ....|.+|.+.+. +..+..+..|++||.|.++|.+++. .+.+.||
T Consensus 2 ~~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LS 81 (275)
T 3aev_A 2 PRKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLS 81 (275)
T ss_dssp -----CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred CcccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEE
Confidence 3345578999999999999999999999998 4689999998874 4456677889999999999999986 5789999
Q ss_pred Eec
Q psy230 123 CVD 125 (222)
Q Consensus 123 ~~~ 125 (222)
++.
T Consensus 82 lk~ 84 (275)
T 3aev_A 82 LRR 84 (275)
T ss_dssp STT
T ss_pred Eee
Confidence 865
No 19
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.20 E-value=5.6e-06 Score=62.98 Aligned_cols=74 Identities=22% Similarity=0.222 Sum_probs=56.8
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECC-CCCeeeeccccccc--cccCCcCCCCCCEEEEEEEecCCC-CeeEEEEec
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAFEGA--TKKNPPKVETGDVVAGKLLTANKD-MESEMVCVD 125 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~ga--tk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~~~ 125 (222)
..+++||+|.|+|+++....+.|||+. ...++++....... ..+.+..|++||.|.++|.+++.. ..+.|+++.
T Consensus 17 ~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~ 94 (119)
T 1wi5_A 17 EALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp TTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCC
T ss_pred hcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEch
Confidence 457999999999999999999999983 34455543322211 224577899999999999999864 578999865
No 20
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.14 E-value=8.6e-06 Score=71.92 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEC--CCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCC-CCeeEEEEec
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIG--SHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANK-DMESEMVCVD 125 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~--~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 125 (222)
..|++||+|.|+|+++.+..++|+|. ....|.+|++.+. +..++.+..|++||.|.++|+++++ ...+.||.+.
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~ 86 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRR 86 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSS
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 35789999999999999999999998 6789999998875 4557788899999999999999986 4678999875
No 21
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.10 E-value=1.7e-05 Score=64.33 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=65.2
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccc------------cccCCcCCCCCCEEEEEEEecCCC--
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGA------------TKKNPPKVETGDVVAGKLLTANKD-- 116 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga------------tk~~r~~l~~GDlV~ArV~~~~~~-- 116 (222)
.+.|.+|+++-|+|++++...+.|+++ +..+.+|.+.+... .++....|+.||-|+.||.+++.+
T Consensus 76 v~~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 76 TYVPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVT 154 (180)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC---
T ss_pred eeeccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCC
Confidence 578999999999999999999999997 57899998765421 146677899999999999999753
Q ss_pred ---CeeEEEEecCCCccccCccc
Q psy230 117 ---MESEMVCVDSRGKEFIMGIL 136 (222)
Q Consensus 117 ---~~~~Ls~~~~~~~~~~~G~L 136 (222)
..+.||+++ ++||.+
T Consensus 155 ~~~~rI~ls~k~-----~gLG~~ 172 (180)
T 4ayb_E 155 GRLPRIALTMRQ-----PYLGKL 172 (180)
T ss_dssp ----CEEEECCS-----TTCEEH
T ss_pred cccCcEEEEcCC-----CCCCCC
Confidence 246788754 899986
No 22
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.08 E-value=6.5e-06 Score=59.65 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=59.5
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECC--CCCeeeecc-ccc-cccccCCcCCCCCCEEEEEEEecCC-CCeeEEEEec
Q psy230 53 VPTRGDLVIGVVTSRVGDNYRVDIGS--HDPAVLSYL-AFE-GATKKNPPKVETGDVVAGKLLTANK-DMESEMVCVD 125 (222)
Q Consensus 53 ~P~vGDiVIG~V~~v~~~~~~VdI~~--~~~a~L~~~-~f~-gatk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 125 (222)
.|++|+++-|+|+ +.+-.+.|+|.. ...|.+|++ .+. +..+..+..+ +||.|.++|++++. .+.+.||++.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 4899999999999 999999999974 479999998 774 3344555677 99999999999986 4678999865
No 23
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.00 E-value=4.1e-06 Score=72.52 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=65.9
Q ss_pred ccccCCCCCCEEEEEEEEEecceEEEEEC--CCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCC-CCeeEEEEe
Q psy230 49 QRRYVPTRGDLVIGVVTSRVGDNYRVDIG--SHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANK-DMESEMVCV 124 (222)
Q Consensus 49 ~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~--~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~ 124 (222)
...+.|++||+|.|+|+++.+..++|+|+ ....|.+|.+.+. +..++.+..|++||.|.++|++++. .+.+.||.+
T Consensus 4 ~~~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk 83 (266)
T 3cw2_C 4 SRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLK 83 (266)
T ss_dssp CSSSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEEST
T ss_pred cccccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEE
Confidence 34578999999999999999999999997 6789999998874 3455666789999999999999986 567889986
Q ss_pred c
Q psy230 125 D 125 (222)
Q Consensus 125 ~ 125 (222)
.
T Consensus 84 ~ 84 (266)
T 3cw2_C 84 K 84 (266)
T ss_dssp T
T ss_pred e
Confidence 5
No 24
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=97.98 E-value=1.5e-05 Score=64.32 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=61.9
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccc-----cc--------cCCcCCCCCCEEEEEEEecCCCC
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGA-----TK--------KNPPKVETGDVVAGKLLTANKDM 117 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga-----tk--------~~r~~l~~GDlV~ArV~~~~~~~ 117 (222)
.+.|.+|+++-|+|+++++..+.|+|+ +..+.+|.+.++.. .. +.+..|++||.|..||.+++.+.
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 578999999999999999999999996 55699999865431 11 23567999999999999987542
Q ss_pred eeEEEEecCCCccccCccc
Q psy230 118 ESEMVCVDSRGKEFIMGIL 136 (222)
Q Consensus 118 ~~~Ls~~~~~~~~~~~G~L 136 (222)
.. .+.+. +-+.++||++
T Consensus 155 ~~-~~~ig-sm~~~~LG~~ 171 (172)
T 2c35_B 155 ND-IFAIG-SLMDDYLGLV 171 (172)
T ss_dssp TE-EEEEE-ECCSTTCEEC
T ss_pred CC-cEEEE-EecCCCCCCC
Confidence 21 12222 2255889976
No 25
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.75 E-value=8.3e-05 Score=59.92 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=61.9
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccccccc----ccC-------CcCCCCCCEEEEEEEecCCCCee
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGAT----KKN-------PPKVETGDVVAGKLLTANKDMES 119 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gat----k~~-------r~~l~~GDlV~ArV~~~~~~~~~ 119 (222)
.+.|.+|+++-|+|++++.-.++|+++. .++.+|.+.++... .++ +..+++||.|..||.+++.+..
T Consensus 78 ~~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~- 155 (171)
T 1y14_B 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS- 155 (171)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT-
T ss_pred EccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC-
Confidence 3679999999999999999999999987 89999998765321 111 2569999999999999875432
Q ss_pred EEEEecCCCccccCccc
Q psy230 120 EMVCVDSRGKEFIMGIL 136 (222)
Q Consensus 120 ~Ls~~~~~~~~~~~G~L 136 (222)
....+. +-+.++||.+
T Consensus 156 ~~~~ig-sm~~~~LG~~ 171 (171)
T 1y14_B 156 SIHAIG-SIKEDYLGAI 171 (171)
T ss_dssp EEEEEE-ECCSTTCEEC
T ss_pred CcEEEE-EcCCCCCCCC
Confidence 123333 3366888864
No 26
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.67 E-value=3.4e-05 Score=62.39 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=64.3
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccccc-----------ccccCCcCCCCCCEEEEEEEecCCCCee
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEG-----------ATKKNPPKVETGDVVAGKLLTANKDMES 119 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g-----------atk~~r~~l~~GDlV~ArV~~~~~~~~~ 119 (222)
.+.|.+|+++-|+|+++++..+.|+++. ..+.+|.+..+. ..++....+++||.|.+||.+++.+..
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~- 156 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDAT- 156 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSS-
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCC-
Confidence 4789999999999999999999999975 569999876542 123456789999999999999875431
Q ss_pred EEEEecCCCccccCccc
Q psy230 120 EMVCVDSRGKEFIMGIL 136 (222)
Q Consensus 120 ~Ls~~~~~~~~~~~G~L 136 (222)
...++. +-|.++||+|
T Consensus 157 ~~~~Ig-tm~~~~LG~~ 172 (172)
T 3h0g_G 157 EIFAIA-TMKEDYLGVL 172 (172)
T ss_dssp CEEEEE-ECCSTTCEEC
T ss_pred CceEEE-EcCCCCCCCC
Confidence 223443 4467899986
No 27
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.47 E-value=0.002 Score=53.32 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=50.6
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccc-ccc-------------c------ccCCcCCCCCCEEEEEE
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAF-EGA-------------T------KKNPPKVETGDVVAGKL 110 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f-~ga-------------t------k~~r~~l~~GDlV~ArV 110 (222)
-+.|.+|.++-|+|++++.....|+++ +..++++.+.. +.. . ++.+..++.||.|+.||
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 478999999999999999999999995 66777776543 110 0 34456799999999999
Q ss_pred EecCC
Q psy230 111 LTANK 115 (222)
Q Consensus 111 ~~~~~ 115 (222)
.+++-
T Consensus 155 ~~v~~ 159 (203)
T 3ayh_B 155 ESEDF 159 (203)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98753
No 28
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=97.46 E-value=0.00031 Score=58.89 Aligned_cols=84 Identities=15% Similarity=0.229 Sum_probs=63.2
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccccccc----ccC-------CcCCCCCCEEEEEEEecCCCCee
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGAT----KKN-------PPKVETGDVVAGKLLTANKDMES 119 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gat----k~~-------r~~l~~GDlV~ArV~~~~~~~~~ 119 (222)
.+.|.+|+++-|+|++++.-.+.|+|+. .++.+|.+..+... .+. +..+++||.|..||.+++.+..
T Consensus 78 ~~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~- 155 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS- 155 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETT-
T ss_pred eeccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCC-
Confidence 4679999999999999999999999987 89999998765321 111 2569999999999999875421
Q ss_pred EEEEecCCCccccCcccC
Q psy230 120 EMVCVDSRGKEFIMGILN 137 (222)
Q Consensus 120 ~Ls~~~~~~~~~~~G~L~ 137 (222)
.+..+. +-+.+++|.+.
T Consensus 156 ~i~~Ig-Smk~~~LG~~~ 172 (215)
T 2b8k_G 156 SIHAIG-SIKEDYLGAIS 172 (215)
T ss_dssp EEEEEE-ECCSTTCEEC-
T ss_pred ccEEEE-EcCCCCCCCcc
Confidence 123333 33668999884
No 29
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.26 E-value=0.00026 Score=52.69 Aligned_cols=75 Identities=8% Similarity=-0.012 Sum_probs=59.4
Q ss_pred ceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC----eEEEeeCCchhHHHHHHHHHHhhcCCHHHHHHHHH
Q psy230 139 GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG----KIWIRCESFSDTVRVGNLIMSCELLSYEEILNLCE 214 (222)
Q Consensus 139 G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG----~iWi~~~~~~~~~~i~~~i~~~e~~~~~~~~~~~~ 214 (222)
-..+.|++.++++++|+++..++.|.+ .+++.|-+..+| .|||.+.+ . .+..|...++.+..+......+
T Consensus 18 ~~~i~Ip~~~ig~IIG~gG~~Ir~I~e--etg~~I~I~~~g~~~~~V~I~G~~-e---~v~~A~~~I~~i~~e~e~~~~d 91 (104)
T 2ctk_A 18 TIEVEVPFDLHRYVIGQKGSGIRKMMD--EFEVNIHVPAPELQSDIIAITGLA-A---NLDRAKAGLLERVKELQAEQED 91 (104)
T ss_dssp EEEEECCHHHHHHHHCSSSHHHHHHHH--HTCCEEECCCTTTTCCEEEEEECH-H---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHccceeCCCchHHHHHHH--HHCCEEEecCCCCCcceEEEEcCH-H---HHHHHHHHHHHHHhhHHHhHHH
Confidence 456899999999999999999999999 999999999999 99999974 3 4566666666655555555556
Q ss_pred HHHHH
Q psy230 215 SIHIR 219 (222)
Q Consensus 215 ~~~~~ 219 (222)
+.++.
T Consensus 92 ~~~~~ 96 (104)
T 2ctk_A 92 RALRS 96 (104)
T ss_dssp HHHCC
T ss_pred HHhcc
Confidence 55543
No 30
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=97.19 E-value=0.00051 Score=48.96 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=49.4
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCe--------EEEeeCCchhHHHHHHHHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK--------IWIRCESFSDTVRVGNLIMS 200 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~--------iWi~~~~~~~~~~i~~~i~~ 200 (222)
..+.|++.++.+++|+++..++.|.+ .+++.|-+..+|. |||.+ ++.....+..+|..
T Consensus 16 ~~i~Ip~~~ig~IIGkgG~~Ik~I~~--~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~ 81 (85)
T 2opv_A 16 QEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMD 81 (85)
T ss_dssp EEEEECTTTHHHHHTTTTHHHHHHHH--HHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHH
T ss_pred EEEEeChhheeeeECCCCHHHHHHHH--HHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHH
Confidence 46889999999999999999999999 9999999999998 99999 66655555555544
No 31
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.18 E-value=0.00093 Score=57.16 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=54.0
Q ss_pred ccCCCCCCEEEEEEEE----EecceEEEEECC---CCCeeeeccccccccccCCcCCCCCCEEEEEEEecCCC---CeeE
Q psy230 51 RYVPTRGDLVIGVVTS----RVGDNYRVDIGS---HDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD---MESE 120 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~----v~~~~~~VdI~~---~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~---~~~~ 120 (222)
.|..+.||+|.|+|.+ +..+.+.|||+. ...|+||.... -.+..|++||-|.|-|..+.+. ..+.
T Consensus 2 ~~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eq-----ip~E~~~~GDrIkayV~~V~~~~~gpqIi 76 (251)
T 2asb_A 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQ-----VPGESYEHGNRLRCYVVGVTRGAREPLIT 76 (251)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGS-----CTTCCCCTTCEEEEEEEEEECCSSSCEEE
T ss_pred chhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHc-----CCCccCCCCCEEEEEEEEEEcCCCCCEEE
Confidence 4888999999999999 899999999986 47999996542 1356899999999999999765 3455
Q ss_pred EEE
Q psy230 121 MVC 123 (222)
Q Consensus 121 Ls~ 123 (222)
||-
T Consensus 77 LSR 79 (251)
T 2asb_A 77 LSR 79 (251)
T ss_dssp EES
T ss_pred EEe
Confidence 553
No 32
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.0012 Score=57.62 Aligned_cols=64 Identities=8% Similarity=-0.060 Sum_probs=57.5
Q ss_pred CCCCEEEEEEEEEecceEEE-EECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEecCC-CCeeEEEEec
Q psy230 55 TRGDLVIGVVTSRVGDNYRV-DIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK-DMESEMVCVD 125 (222)
Q Consensus 55 ~vGDiVIG~V~~v~~~~~~V-dI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 125 (222)
.+||.|-|+|+++++-.++| +|+..+.|.+|.+... ..+++||-|.|+|+.+++ +..+.||++.
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~-------~~l~~Gd~v~~~V~~id~~d~kI~LSlk~ 216 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY-------AEPRLGQVLDARVIGFREVDRTLNLSLKP 216 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS-------SCCCTTCEEEEEEEEEETTTTEEEEECSC
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc-------ccCCCCCEEEEEEEEEECCCCeEEEEeCh
Confidence 57999999999999999999 9999999999976643 469999999999999998 7889999964
No 33
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.15 E-value=0.0014 Score=58.55 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=54.9
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEecCCC-CeeEEEE
Q psy230 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKD-MESEMVC 123 (222)
Q Consensus 51 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~ 123 (222)
.|..+.||+|-|+|.++..+.+.||++ -..|+||.+.+. .+..|++||-|.|.|.++.++ ..+.|..
T Consensus 129 e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~sE~i-----p~E~~~vGD~Vkv~V~~V~~~~kg~~I~L 196 (344)
T 1hh2_P 129 KYSELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWI-----PGEEIKAGDLVKVYIIDVVKTTKGPKILV 196 (344)
T ss_dssp CTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGGGSC-----TTCCCCTTCEEEEEEEEEEEETTEEEEEE
T ss_pred HHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHHHcC-----CCcCCCCCCEEEEEEEEEEcCCCCcEEEE
Confidence 477889999999999999999999998 679999987653 245899999999999999754 2344443
No 34
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.14 E-value=6.5e-05 Score=73.16 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCCCCeeEEEEec
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 125 (222)
..|++|+++.|+|+++.+-.++|+|.....|.+|++.+. ...++....|++||.|.++|.++++.+.+.||.+.
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~grI~LS~K~ 707 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKV 707 (726)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCcEEEEEee
Confidence 468999999999999999999999998899999998875 35667788999999999999999877788899865
No 35
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=97.13 E-value=0.00078 Score=46.46 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=48.8
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC----eEEEeeCCchhHHHHHHHHHHhhc
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG----KIWIRCESFSDTVRVGNLIMSCEL 203 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG----~iWi~~~~~~~~~~i~~~i~~~e~ 203 (222)
..+.|++.++++++|+++..++.|.+ .+++.|-+..+| .|||.+. .+ .+..|...++.
T Consensus 7 ~~i~I~~~~ig~iIG~gG~~I~~I~e--~tg~~I~i~~~g~~~~~V~I~G~-~~---~v~~A~~~I~~ 68 (71)
T 1vig_A 7 VEINIDHKFHRHLIGKSGANINRIKD--QYKVSVRIPPDSEKSNLIRIEGD-PQ---GVQQAKRELLE 68 (71)
T ss_dssp EEEEECSSHHHHHTCSSCCHHHHHHH--HTCCEEECCCCCSSSEEEEEEES-SH---HHHHHHHHHHH
T ss_pred EEEEECHHHhhhhcCCCCccHHHHHH--HHCCEEEECCCCCcccEEEEEcC-HH---HHHHHHHHHHH
Confidence 45899999999999999999999999 999999999999 9999998 44 34555555443
No 36
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.13 E-value=0.00045 Score=50.68 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=49.5
Q ss_pred ceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC-------eEEEeeCCchhHHHHHHHHHHh
Q psy230 139 GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG-------KIWIRCESFSDTVRVGNLIMSC 201 (222)
Q Consensus 139 G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG-------~iWi~~~~~~~~~~i~~~i~~~ 201 (222)
-..+.|++.++++++|+++.+++.|.+ .+++.|-|..+| .|||.+. ......+...|..+
T Consensus 18 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~--etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~i 84 (97)
T 2ctl_A 18 KLSVTVDPKYHPKIIGRKGAVITQIRL--EHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRI 84 (97)
T ss_dssp EEEEECCTTTHHHHSCSSSCHHHHHHH--HHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHH
T ss_pred eEEEEECHHHhhhcCCCCchhHHHHHH--HHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHH
Confidence 456899999999999999999999999 999999999999 9999996 54444444444443
No 37
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.001 Score=68.05 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccc--cccCCcCCCCCCEEEEEEEecCC-CCeeEEEEec
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGA--TKKNPPKVETGDVVAGKLLTANK-DMESEMVCVD 125 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga--tk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 125 (222)
-..++|++|-|+|+++.....+|+|.+...|.+|++.+... .+..+..|++||.|.|+|++++. ...+.||++.
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 46789999999999999999999999888999999887643 45667889999999999999974 4679999976
No 38
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.76 E-value=0.0032 Score=56.61 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=54.2
Q ss_pred cccCCCCCCEEEEEEEE----EecceEEEEECC---CCCeeeeccccccccccCCcCCCCCCEEEEEEEecCCCC-eeEE
Q psy230 50 RRYVPTRGDLVIGVVTS----RVGDNYRVDIGS---HDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDM-ESEM 121 (222)
Q Consensus 50 ~~Y~P~vGDiVIG~V~~----v~~~~~~VdI~~---~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~~-~~~L 121 (222)
..|..++||+|.|+|.+ +....+.|||+. ...|+||....- .+..|++||-|.|-|..+.++. .+.|
T Consensus 124 ~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi-----P~E~~~~GDrVkvyV~~V~~~~kgpqI 198 (366)
T 1k0r_A 124 GEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-----PGESYEHGNRLRCYVVGVTRGAREPLI 198 (366)
T ss_dssp ---CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC-----TTCCCCTTCEEEEEEEEEECCSSSCEE
T ss_pred HHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC-----CCccCCCCCEEEEEEEEEecCCCccEE
Confidence 35889999999999999 999999999986 479999975421 2468999999999999998652 3455
Q ss_pred EE
Q psy230 122 VC 123 (222)
Q Consensus 122 s~ 123 (222)
..
T Consensus 199 ~L 200 (366)
T 1k0r_A 199 TL 200 (366)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 39
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=96.72 E-value=0.0028 Score=45.94 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=51.2
Q ss_pred ceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCe--------EEEeeCCchhHHHHHHHHHHhh
Q psy230 139 GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK--------IWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 139 G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~--------iWi~~~~~~~~~~i~~~i~~~e 202 (222)
=..+.|++.++.+++|+++..++.|.+ .+.+.|-|..+|. |||.+ +++.+..+...|..+-
T Consensus 16 ~~~i~Ip~~~vG~IIGkgG~~Ik~I~~--~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i 84 (94)
T 1x4m_A 16 VQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELI 84 (94)
T ss_dssp EEEEEECHHHHHHHSCSSSSHHHHHHH--HHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHH
T ss_pred EEEEEEChhhcceEECCCCHHHHHHHH--HHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999 9999999999987 99999 6665666666665543
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.50 E-value=0.0014 Score=62.96 Aligned_cols=60 Identities=13% Similarity=0.017 Sum_probs=51.8
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhhcC
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELL 204 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e~~ 204 (222)
..++|++.+++.++|+++.+++.|.+ .++++|-|..||.|||.+.+.. .+.+|+..++.+
T Consensus 569 ~~~~I~~~kI~~vIG~gG~~Ik~I~e--~tg~~I~I~d~G~V~I~~~~~~---~~~~A~~~I~~i 628 (630)
T 3u1k_A 569 ETVQVPLSKRAKFVGPGGYNLKKLQA--ETGVTISQVDEETFSVFAPTPS---AMHEARDFITEI 628 (630)
T ss_dssp EEEECCHHHHHHHHCGGGHHHHHHHH--HHCCEEEECSSSEEEEEESSHH---HHHHHHHHTTC-
T ss_pred EEEEeChhHhheeECCCChhHHHHHH--HHCCEEEEcCCcEEEEEeCCHH---HHHHHHHHHHHH
Confidence 67899999999999999999999999 9999999999999999998765 456666666553
No 41
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.42 E-value=0.0005 Score=67.01 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccc-cccccCCcCCCCCCEEEEEEEecCCCCeeEEEEec
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE-GATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 125 (222)
..|++|+++-|+|+++.+-.++|+|.....|.+|.+.+. ...++....|++||.|.++|.+++..+.+.||.+.
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~ 697 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 697 (723)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEEe
Confidence 568999999999999999999999988899999998875 35677788999999999999999876778888864
No 42
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.00054 Score=69.07 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccc--cccCCcCCCCCCEEEEEEEecCC-CCeeEEEEec
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGA--TKKNPPKVETGDVVAGKLLTANK-DMESEMVCVD 125 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga--tk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 125 (222)
-..++|++|-|+|+++.....+|+|.....|.+|++.+... .++....|++||.|.|+|++++. ...+.||++.
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 35689999999999999999999998888999999887543 46667889999999999999984 4678999975
No 43
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.35 E-value=0.0033 Score=45.84 Aligned_cols=58 Identities=5% Similarity=0.103 Sum_probs=47.6
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC-----eEEEeeCCchhHHHHHHHHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG-----KIWIRCESFSDTVRVGNLIMS 200 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG-----~iWi~~~~~~~~~~i~~~i~~ 200 (222)
..+.|++.++++++|+++..++.|.+ .+++.|-+-.+| .|||.+. ++....+..+|+.
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~~Ir~I~e--~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~ 81 (95)
T 2ctm_A 19 EDVPLDHRVHARIIGARGKAIRKIMD--EFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILN 81 (95)
T ss_dssp EEEECCTTTHHHHHCSSSCHHHHHHH--HHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHH
T ss_pred EEEEECHHHccccCCCCcchHHHHHH--HHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHH
Confidence 56899999999999999999999999 899999999999 8999997 3434444444433
No 44
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.049 Score=45.49 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=51.6
Q ss_pred cccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccc-cc------c-------c-ccCCcCCCCCCEEEEEEEecC
Q psy230 50 RRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAF-EG------A-------T-KKNPPKVETGDVVAGKLLTAN 114 (222)
Q Consensus 50 ~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f-~g------a-------t-k~~r~~l~~GDlV~ArV~~~~ 114 (222)
-.+.|.+|.++-|+|++++...+.|++..+..++++.+.+ +. . . ++.+..|+.||.|+.||.+++
T Consensus 75 ~~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~ 154 (218)
T 2ckz_B 75 VVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 (218)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred EEecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEE
Confidence 3578999999999999999999999995567777776543 11 1 1 345678999999999999886
Q ss_pred C
Q psy230 115 K 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 155 ~ 155 (218)
T 2ckz_B 155 F 155 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 45
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.33 E-value=0.00042 Score=67.84 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=37.3
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccc----c-cccccCCcCCCCCCEEEEEEEecCCCCeeEEEEec
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAF----E-GATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f----~-gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 125 (222)
..|++|+++-|+|+++.+-.++|+|.....|.+|++.+ . ...++....|++||.|.++|.++++.+.+.||++.
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~ 741 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIPVI 741 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCSSCC-------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCCEEEEEec
Confidence 56899999999999999999999998889999999987 3 35667788999999999999999877778888865
No 46
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.29 E-value=0.0012 Score=64.80 Aligned_cols=73 Identities=23% Similarity=0.218 Sum_probs=62.2
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccccc-ccccCCcCCCCCCEEEEEEEecCC-CCeeEEEEec
Q psy230 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEG-ATKKNPPKVETGDVVAGKLLTANK-DMESEMVCVD 125 (222)
Q Consensus 53 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 125 (222)
..++|++|-|+|+++..-..+|+|+....|.+|++.+.. ...+....|++||.|.++|++++. ...+.||++.
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 468999999999999999999999888899999987653 334445679999999999999986 4679999875
No 47
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=96.13 E-value=0.047 Score=51.19 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCCCCCEEEEEEEEEecc--eEEEEECCCCCeeeecccccc-c---------cccCCcCCCCCCEEEEEEEecCCC-Cee
Q psy230 53 VPTRGDLVIGVVTSRVGD--NYRVDIGSHDPAVLSYLAFEG-A---------TKKNPPKVETGDVVAGKLLTANKD-MES 119 (222)
Q Consensus 53 ~P~vGDiVIG~V~~v~~~--~~~VdI~~~~~a~L~~~~f~g-a---------tk~~r~~l~~GDlV~ArV~~~~~~-~~~ 119 (222)
.+.+|++..|+|+++.+. .++|||+..-.|+||++.... . ..+..+.+++||-|..+|...... .-+
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa 121 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 121 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCc
Confidence 467999999999999998 999999999999999876521 1 123456799999999999986533 336
Q ss_pred EEEE
Q psy230 120 EMVC 123 (222)
Q Consensus 120 ~Ls~ 123 (222)
.||+
T Consensus 122 ~lTt 125 (517)
T 2bx2_L 122 ALTT 125 (517)
T ss_dssp EEES
T ss_pred eEEe
Confidence 6666
No 48
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=96.00 E-value=0.0047 Score=45.55 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=48.2
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe--------CCeEEEeeCCchhHHHHHHHHHHhhc
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM--------NGKIWIRCESFSDTVRVGNLIMSCEL 203 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~--------NG~iWi~~~~~~~~~~i~~~i~~~e~ 203 (222)
..+.|++.++.+++|+++..++.|.+ .+++.|-|.. ++.|||.+.+. .+.+|...++.
T Consensus 17 ~~i~Ip~~~ig~IIGkgG~~Ik~I~~--~tga~I~I~~~~~~~~~~~~~V~I~G~~~----~v~~A~~~I~~ 82 (104)
T 1we8_A 17 EQLSVPQRSVGRIIGRGGETIRSICK--ASGAKITCDKESEGTLLLSRLIKISGTQK----EVAAAKHLILE 82 (104)
T ss_dssp EEEEEETTTHHHHHTTTSHHHHHHHH--HHCCEEEECCSSCCSSSSEEEEEEEEEHH----HHHHHHHHHHH
T ss_pred EEEEEChhheeeeECCCCHHHHHHHH--HHCCEEEEecCCCCCCCCcceEEEEcCHH----HHHHHHHHHHH
Confidence 56889999999999999999999999 8999999986 79999998654 34555555554
No 49
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.67 E-value=0.025 Score=40.99 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=51.6
Q ss_pred ccCCceE--EEechhhhhhccCCChhHHHHhhhcCCCcEE-EEEEe-CCeEEEeeCCchhHHHHHHHHHHhh
Q psy230 135 ILNDGYL--LHTSISLCRKLLNPKCPLLKQLAKRSRQKME-LSIGM-NGKIWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 135 ~L~~G~l--~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~e-i~vG~-NG~iWi~~~~~~~~~~i~~~i~~~e 202 (222)
.+..+++ +.|++.+++.++|+++..++.|.+ .++.. |-+-- +|.|-|.+.+......+...|+.+|
T Consensus 10 ~~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e--~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 10 QLAAAFHEEFVVREDLMGLAIGTHGSNIQQARK--VPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SSSCSEEEEEECCHHHHHHHHTTTTHHHHHHHT--STTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred hccCceEEEEEEChHHhhhhcCCCcHHHHHHHH--HhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 4444544 679999999999999999999999 99997 98886 5999999988775544444444444
No 50
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=95.44 E-value=0.021 Score=42.33 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=46.2
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC------eEEEeeCCchhHHHHHHHHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG------KIWIRCESFSDTVRVGNLIMS 200 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG------~iWi~~~~~~~~~~i~~~i~~ 200 (222)
..+.|++.++.+++++....++.|.+ .+.+.|-|-.++ .|+|.+. ++.+..+...|+.
T Consensus 13 ~~i~Ip~~~iG~IIGkgG~~Ik~I~~--~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 13 IDVPVPRHSVGVVIGRSGEMIKKIQN--DAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIIND 76 (106)
T ss_dssp EEEEEETTTHHHHHTTTTHHHHHHHH--HHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHH
T ss_pred EEEEECHHHcCccCCCCcHHHHHHHH--HHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHH
Confidence 57899999999999999999999999 999999998765 7999986 4434444444433
No 51
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.29 E-value=0.044 Score=39.84 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=48.5
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCC-cEEEEEEeCC----eEEEeeCCchhHHHHHHHHHHhhc
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQ-KMELSIGMNG----KIWIRCESFSDTVRVGNLIMSCEL 203 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~-~~ei~vG~NG----~iWi~~~~~~~~~~i~~~i~~~e~ 203 (222)
..+.|++.+.+.++|+++..++.|.+ .+ ++.|-+-..| .|-|.+++. .+..|...++.
T Consensus 19 ~~i~Ip~~~i~~iIG~gGk~Ir~I~e--etggv~I~i~~~g~~~~~V~I~G~~~----~v~~A~~~I~~ 81 (95)
T 2ctj_A 19 VEVSIPAKLHNSLIGTKGRLIRSIME--ECGGVHIHFPVEGSGSDTVVIRGPSS----DVEKAKKQLLH 81 (95)
T ss_dssp EEEECCHHHHHHHHCSSSHHHHHHHH--HHTSCEEECCCTTTTCCEEEEESCHH----HHHHHHHHHHH
T ss_pred EEEEECHHHHhhhCCCCchhHHHHHH--HcCCCEEEeCCCCCCcceEEEEcCHH----HHHHHHHHHHH
Confidence 45889999999999999999999988 88 8999999999 999999754 44555555544
No 52
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.20 E-value=0.08 Score=40.13 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=52.2
Q ss_pred ccCcccCCceEEEec---h--hhhhhccCCChhHHHHhhhcCCCcEEEEEE----------------eCCeEEEeeCCch
Q psy230 131 FIMGILNDGYLLHTS---I--SLCRKLLNPKCPLLKQLAKRSRQKMELSIG----------------MNGKIWIRCESFS 189 (222)
Q Consensus 131 ~~~G~L~~G~l~~v~---~--~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG----------------~NG~iWi~~~~~~ 189 (222)
.++-.+..=+.+.+. | .++.+++|+++..++.|.+ .++|.|.|- -.|.|.|.+.+..
T Consensus 7 ~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~--eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e 84 (119)
T 2yqr_A 7 GGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQI--ETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPE 84 (119)
T ss_dssp SCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHH--HHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHH
T ss_pred CCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHH--HHCCEEEEecCCccccccccccccCCCcEEEEEeCCHH
Confidence 334334445555554 2 5999999999999999999 999999985 4589999998876
Q ss_pred hHHHHHHHHHHhhcCC
Q psy230 190 DTVRVGNLIMSCELLS 205 (222)
Q Consensus 190 ~~~~i~~~i~~~e~~~ 205 (222)
.+.+|...|+.+.
T Consensus 85 ---~i~~A~~~Ie~Ll 97 (119)
T 2yqr_A 85 ---GLAAAKKLCENLL 97 (119)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHh
Confidence 5566666666653
No 53
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.98 E-value=0.093 Score=40.38 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=40.8
Q ss_pred hhhhhccCCChhHHHHhhhcCCCcEEEEEEe----------------------CCeEEEeeCCchhHHHHHHHHHHhh
Q psy230 147 SLCRKLLNPKCPLLKQLAKRSRQKMELSIGM----------------------NGKIWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 147 ~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~----------------------NG~iWi~~~~~~~~~~i~~~i~~~e 202 (222)
.++.+++|+++..++.|.+ .++|.|.|-- .|.|+|.+.+... +..|+..|+
T Consensus 22 n~iG~IIGP~G~tiK~Iq~--eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~---~~~A~~~I~ 94 (131)
T 1k1g_A 22 NFVGLLIGPRGNTLKNIEK--ECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN---VKKAVEQIR 94 (131)
T ss_dssp HHHHHHHCSSSHHHHHHHH--HSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH---HHHHHHHHH
T ss_pred ceeeeEECCCcHHHHHHHH--HHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH---HHHHHHHHH
Confidence 3889999999999999999 9999998843 6799999988764 444444444
No 54
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=93.82 E-value=0.048 Score=42.49 Aligned_cols=56 Identities=5% Similarity=0.032 Sum_probs=45.6
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe------CCeEEEeeCCchhHHHHHHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM------NGKIWIRCESFSDTVRVGNLI 198 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~------NG~iWi~~~~~~~~~~i~~~i 198 (222)
.-+.|++.++.+++|+++..++.|.+ .+++.|-+.. ++.|+|.+. +..+..+..+|
T Consensus 93 ~~i~vp~~~~g~iIGk~G~~I~~i~~--~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I 154 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGEMIKKIQN--DAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARII 154 (164)
T ss_dssp BCCEEETTTHHHHHCSSSHHHHHHHH--HTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHH
T ss_pred EEEEEChhhccccCCCCcHhHHHHHH--HHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHH
Confidence 56789999999999999999999999 8999999987 689999996 44343333333
No 55
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=93.76 E-value=0.31 Score=42.11 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEecCCCCeeEEEEec
Q psy230 54 PTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD 125 (222)
Q Consensus 54 P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 125 (222)
..+|++|-|+|++++...+.||++ ...+.||.+..+. .+||-|.+.|.. +......+|+..
T Consensus 4 ~~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~~---------~vGdevev~v~~-d~~~r~iat~~~ 64 (285)
T 3go5_A 4 TNLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQH---------TVGDTVKGFAYT-DMKQKLRLTTLE 64 (285)
T ss_dssp TTTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCCC---------CTTSEEEEEEEE-CTTSCEEEECSC
T ss_pred ccCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCcc---------ccCCEEEEEEEE-CCCCCEEEeccc
Confidence 358999999999999999999997 5789999876542 677777777653 333445555543
No 56
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=93.68 E-value=0.092 Score=36.05 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=44.5
Q ss_pred EEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe------CCeEEEeeCCchhHHHHHHHH
Q psy230 141 LLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM------NGKIWIRCESFSDTVRVGNLI 198 (222)
Q Consensus 141 l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~------NG~iWi~~~~~~~~~~i~~~i 198 (222)
-+.|+..++.+++|+++..++.|.+ .+++.|-+.. ++.|.|.+. +..+..+...|
T Consensus 8 ~i~Ip~~~vg~iIGkgG~~Ik~I~~--~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I 68 (76)
T 2p2r_A 8 ELTIPNDLIGCIIGRQGAKINEIRQ--MSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLI 68 (76)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHH--HHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHH
T ss_pred EEEEChHHcceEECCCChHHHHHHH--HHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHH
Confidence 4789999999999999999999999 8899998887 789999986 44343333333
No 57
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=93.62 E-value=0.13 Score=37.99 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=45.7
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeC---------CeEEEeeCCchhHHHHHHHHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN---------GKIWIRCESFSDTVRVGNLIMS 200 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~N---------G~iWi~~~~~~~~~~i~~~i~~ 200 (222)
.-+.|+..++.+++|+++..++.|.+ .+.+.|-|-.+ +.|.|.+ +.+.+..+...|..
T Consensus 9 ~~i~IP~~~vG~IIGkgG~~Ik~I~~--~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~ 75 (107)
T 2hh2_A 9 MTFSIPTHKCGLVIGRGGENVKAINQ--QTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEE 75 (107)
T ss_dssp EEEEEEGGGTTTTSTTTTCHHHHHHH--HSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHH
T ss_pred EEEEECHHHcCccCCCCcHHHHHHHH--HhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHH
Confidence 45789999999999999999999999 88889988876 6888988 55544444444443
No 58
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=93.59 E-value=0.25 Score=36.12 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=45.1
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccccccc------cc-CCcCCCCCCEEEEE
Q psy230 52 YVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGAT------KK-NPPKVETGDVVAGK 109 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gat------k~-~r~~l~~GDlV~Ar 109 (222)
..|..|+...+.|+++.++...|-+.....+.|+.....-|- ++ ....|++||+|+.+
T Consensus 29 ~~~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 29 DIGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TSCTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 357789999999999999999999977677778764433221 22 44669999999998
No 59
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=93.56 E-value=0.12 Score=35.40 Aligned_cols=57 Identities=9% Similarity=0.011 Sum_probs=45.3
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeC---------CeEEEeeCCchhHHHHHHHHHHhh
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN---------GKIWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~N---------G~iWi~~~~~~~~~~i~~~i~~~e 202 (222)
.-+.||..++.+++|+++..++.|.+ .+++.|-|..+ +.|.|.+. +. .+..|...++
T Consensus 5 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~--~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~---~v~~A~~~I~ 70 (76)
T 1dtj_A 5 VEMAVPENLVGAILGKGGKTLVEYQE--LTGARIQISKKGEFLPGTRNRRVTITGS-PA---ATQAAQYLIS 70 (76)
T ss_dssp EEEEEETTTHHHHHCSTTHHHHHHHH--HHCCEEEECCTTCCSTTCCEEEEEEEES-HH---HHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCchHHHHHHH--HhCCEEEECcCCCCCCCCceeEEEEEeC-HH---HHHHHHHHHH
Confidence 34789999999999999999999999 89999999875 58999885 44 4444444444
No 60
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=93.26 E-value=0.15 Score=35.49 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=43.9
Q ss_pred EEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeC------CeEEEeeCCchhHHHHHHHHHHhh
Q psy230 141 LLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN------GKIWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 141 l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~N------G~iWi~~~~~~~~~~i~~~i~~~e 202 (222)
-+.|++.++.+++|+++..++.|.+ .+++.|-+-.. +.|.|.+. ++ .+.+|...++
T Consensus 10 ~i~Vp~~~vg~iIGkgG~~Ik~I~~--~tga~I~i~~~~~~~~~~~v~I~G~-~~---~v~~A~~~I~ 71 (82)
T 1zzk_A 10 QVTIPKDLAGSIIGKGGQRIKQIRH--ESGASIKIDEPLEGSEDRIITITGT-QD---QIQNAQYLLQ 71 (82)
T ss_dssp EEEEETTTGGGGTCGGGHHHHHHHH--HHCCEEEECCTTSCSSEEEEEEEEC-HH---HHHHHHHHHH
T ss_pred EEEEChHhcCeeECCCchHHHHHHH--HHCCEEEEcCCCCCCCceEEEEEeC-HH---HHHHHHHHHH
Confidence 4789999999999999999999999 88888888764 58999984 44 3444444443
No 61
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=92.74 E-value=0.22 Score=34.01 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=44.5
Q ss_pred EEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC----eEEEeeCCchhHHHHHHHHHHh
Q psy230 141 LLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG----KIWIRCESFSDTVRVGNLIMSC 201 (222)
Q Consensus 141 l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG----~iWi~~~~~~~~~~i~~~i~~~ 201 (222)
-+.|++.++..++|+++..++.|.+ .+++.|-+..+| .|-|.+. +. .+.+|...+
T Consensus 8 ~i~ip~~~ig~iIGkgG~~Ik~I~~--~tga~I~i~~~~~~er~v~I~G~-~~---~v~~A~~~I 66 (73)
T 2axy_A 8 RLLMHGKEVGSIIGKKGESVKKMRE--ESGARINISEGNCPERIITLAGP-TN---AIFKAFAMI 66 (73)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHH--HHCCEEEECSSCCSEEEEEEEEC-HH---HHHHHHHHH
T ss_pred EEEEChhHeeeEECCCCHHHHHHHH--HHCCEEEEecCCCCcEEEEEEeC-HH---HHHHHHHHH
Confidence 4689999999999999999999999 899999999888 5888886 44 334444443
No 62
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=92.73 E-value=0.15 Score=36.20 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=44.8
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe------CCeEEEeeCCchhHHHHHHHHHHhh
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM------NGKIWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~------NG~iWi~~~~~~~~~~i~~~i~~~e 202 (222)
.-+.|+..++.+++|+++..++.|.+ .+++.|-|-. ++.|.|.+. ++ .+.+|...++
T Consensus 16 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~--~tga~I~I~~~~~~~~~~~v~I~G~-~e---~v~~A~~~I~ 78 (89)
T 1j5k_A 16 TQVTIPKDLAGSIIGKGGQRIKQIRH--ESGASIKIDEPLEGSEDRIITITGT-QD---QIQNAQYLLQ 78 (89)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHH--HTCCEEEECSCCSSSSEEEEEEEEE-HH---HHHHHHHHHH
T ss_pred EEEEEChhhcceeECCCCHhHHHHHH--HhCCeEEecCCCCCCCccEEEEEcC-HH---HHHHHHHHHH
Confidence 34789999999999999999999999 8888888876 488999986 43 3344444443
No 63
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=92.38 E-value=0.28 Score=38.05 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=45.2
Q ss_pred EEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC--------eEEEeeCCchhHHHHHHHHHH
Q psy230 141 LLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG--------KIWIRCESFSDTVRVGNLIMS 200 (222)
Q Consensus 141 l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG--------~iWi~~~~~~~~~~i~~~i~~ 200 (222)
-+.|++.++..++|+++..++.|.+ .+++.|-+-.++ .|+|.+ ++..+..+..+|..
T Consensus 5 ~~~Vp~~~~g~iIGk~G~~Ik~i~~--~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ 69 (164)
T 2jvz_A 5 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMD 69 (164)
T ss_dssp EEEECTTCHHHHTCTTTHHHHHHHH--TSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHH
T ss_pred EEEechhheeEEECCChHHHHHHHH--HhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHH
Confidence 3679999999999999999999999 999999887765 799998 44444444444443
No 64
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=92.34 E-value=0.28 Score=35.02 Aligned_cols=51 Identities=2% Similarity=-0.005 Sum_probs=42.3
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeC------CeEEEeeCCchhHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN------GKIWIRCESFSDTVR 193 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~N------G~iWi~~~~~~~~~~ 193 (222)
.-+.|+..++.+++|+++..++.|.+ .+++.|-|-.+ +.|.|.+. ++.+..
T Consensus 17 ~~i~Ip~~~vG~IIGkgG~~Ik~I~~--~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~ 73 (92)
T 1x4n_A 17 EEYKVPDGMVGFIIGRGGEQISRIQQ--ESGCKIQIAPDSGGLPERSCMLTGT-PESVQS 73 (92)
T ss_dssp EEEEEEHHHHHHHHCSSSHHHHHHHH--HSCCEEEECSCCTTCSEEEEEEEEC-HHHHHH
T ss_pred EEEEEChHHcceeECCCchHHHHHHH--HhCCEEEEcCCCCCCCccEEEEEeC-HHHHHH
Confidence 45789999999999999999999999 89999988876 48999986 443333
No 65
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=92.28 E-value=0.21 Score=35.17 Aligned_cols=58 Identities=9% Similarity=0.002 Sum_probs=46.0
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeC---------CeEEEeeCCchhHHHHHHHHHHhhc
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN---------GKIWIRCESFSDTVRVGNLIMSCEL 203 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~N---------G~iWi~~~~~~~~~~i~~~i~~~e~ 203 (222)
.-+.||..++.+++|+++..++.|.+ .+++.|-|..+ +.|.|.+. +. .+..|...++.
T Consensus 5 ~~i~IP~~~vG~IIGkgG~~Ik~I~~--~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~---~v~~A~~~I~~ 71 (87)
T 1ec6_A 5 VEIAVPENLVGAILGKGGKTLVEYQE--LTGARIQISKKGEFLPGTRNRRVTITGS-PA---ATQAAQYLISQ 71 (87)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHH--HHCCEEEECCTTCBSTTSCEEEEEEESS-HH---HHHHHHHHHHH
T ss_pred EEEEEChHHcCeeECCCcHhHHHHHH--HhCCEEEEccCCCCCCCCCceEEEEEcC-HH---HHHHHHHHHHH
Confidence 45789999999999999999999999 89999999875 48999885 44 44445444444
No 66
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=92.25 E-value=0.16 Score=35.36 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=45.6
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe------CCeEEEeeCCchhHHHHHHHHHHhhc
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM------NGKIWIRCESFSDTVRVGNLIMSCEL 203 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~------NG~iWi~~~~~~~~~~i~~~i~~~e~ 203 (222)
.-+.|+..++..++|+++..++.|.+ .+++.|-|-. ++.|.|.+.. . .+..|...++.
T Consensus 8 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~--~sga~I~i~~~~~~~~~r~v~I~G~~-~---~v~~A~~~I~~ 71 (82)
T 1wvn_A 8 HELTIPNNLIGCIIGRQGANINEIRQ--MSGAQIKIANPVEGSSGRQVTITGSA-A---SISLAQYLINA 71 (82)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHH--HHCCEEEECCCCTTCSEEEEEEEECH-H---HHHHHHHHHHH
T ss_pred EEEEEchHhccceeCCCchhHHHHHH--HhCCEEEEecCCCCCCceEEEEEcCH-H---HHHHHHHHHHH
Confidence 34789999999999999999999999 8888888876 5699999854 3 34445554443
No 67
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.83 E-value=0.092 Score=37.78 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=45.8
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe----CCeEEEeeCCchhHHHHHHHHHHhhc
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM----NGKIWIRCESFSDTVRVGNLIMSCEL 203 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~----NG~iWi~~~~~~~~~~i~~~i~~~e~ 203 (222)
.-+.|++.+++.++|+++..++.|.+ .+++.|-+-. +|.|.|.+. +. .+.+|...++.
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~~Ik~I~~--etg~~I~i~~~~~~~~~V~I~G~-~e---~v~~A~~~I~~ 80 (94)
T 2cte_A 19 ATVAIPKEHHRFVIGKNGEKLQDLEL--KTATKIQIPRPDDPSNQIKITGT-KE---GIEKARHEVLL 80 (94)
T ss_dssp EEEECCTTTHHHHHCSSSCHHHHHHH--HTTCCCBCCCTTSSCCEEEEEEC-HH---HHHHHHHHHHH
T ss_pred EEEEEChHHeeeeECCCChhHHHHHH--HHCCEEEeCCCCCCCCeEEEEEC-HH---HHHHHHHHHHH
Confidence 45789999999999999999999999 8888888865 589999997 44 34445544444
No 68
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=91.68 E-value=0.14 Score=39.84 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=42.9
Q ss_pred EEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC--------eEEEeeCCchhHHHH
Q psy230 141 LLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG--------KIWIRCESFSDTVRV 194 (222)
Q Consensus 141 l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG--------~iWi~~~~~~~~~~i 194 (222)
-+.|++.++.+++|+++..++.|.+ .+++.|-+-.+| .|+|.+ ++..+..+
T Consensus 88 ~i~vp~~~~g~iIGkgG~~I~~i~~--~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A 146 (163)
T 3krm_A 88 HIRVPASAAGRVIGKGGKTVNELQN--LTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMA 146 (163)
T ss_dssp EEEEETTTHHHHHCGGGHHHHHHHH--HHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHH
T ss_pred EEEcChhheeeEEcCCChHHHHHHH--HhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHH
Confidence 4789999999999999999999998 889999998888 799999 45433333
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=89.78 E-value=0.46 Score=36.96 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=43.5
Q ss_pred hhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC------------------------eEEEeeCCchhH--HHHHHHHHH
Q psy230 147 SLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG------------------------KIWIRCESFSDT--VRVGNLIMS 200 (222)
Q Consensus 147 ~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG------------------------~iWi~~~~~~~~--~~i~~~i~~ 200 (222)
+++.+++|+++..++.|.+ .++|.|.|-=.| .|+|.+.+.... ..+..|+..
T Consensus 17 NfiG~IiGPrG~t~K~ie~--eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~ 94 (140)
T 2bl5_A 17 NFVGRILGPRGLTAKQLEA--ETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEE 94 (140)
T ss_dssp CHHHHHTTTTHHHHHHHHH--HHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHH
T ss_pred CeeeEEECCCcchHHHHHH--HHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHH
Confidence 5688999999999999999 999999887666 899999877421 255666666
Q ss_pred hhc
Q psy230 201 CEL 203 (222)
Q Consensus 201 ~e~ 203 (222)
|+.
T Consensus 95 I~~ 97 (140)
T 2bl5_A 95 VKK 97 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 70
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=85.80 E-value=1 Score=35.27 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=43.6
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeC---------CeEEEeeCCchhHHHHHHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN---------GKIWIRCESFSDTVRVGNLI 198 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~N---------G~iWi~~~~~~~~~~i~~~i 198 (222)
+-+.|+..++.+++|+++..++.|.+ .+++.|-|-.+ +.|.|.+ ++..+..+...|
T Consensus 106 ~~i~vp~~~~g~iIGkgG~~Ik~I~~--~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I 170 (174)
T 1j4w_A 106 FNFIVPTGKTGLIIGKGGETIKSISQ--QSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLI 170 (174)
T ss_dssp EEEEEETTTHHHHHCGGGHHHHHHHH--HHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHH
T ss_pred EEEEEChHHcCeeECCCchHHHHHHH--HHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHH
Confidence 35788999999999999999999999 88889988765 6899988 444333333333
No 71
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=85.76 E-value=1.9 Score=41.25 Aligned_cols=71 Identities=10% Similarity=0.019 Sum_probs=55.1
Q ss_pred CCCCCC--EEEEEEEEEecceEEEEEC-CCCCeeeecccccc---c------cc----cCCcCCCCCCEEEEEEEecCCC
Q psy230 53 VPTRGD--LVIGVVTSRVGDNYRVDIG-SHDPAVLSYLAFEG---A------TK----KNPPKVETGDVVAGKLLTANKD 116 (222)
Q Consensus 53 ~P~vGD--iVIG~V~~v~~~~~~VdI~-~~~~a~L~~~~f~g---a------tk----~~r~~l~~GDlV~ArV~~~~~~ 116 (222)
.+++|+ ..-|+|++++...+.|.|. ....+.+|++.+.. . .. +....|++||-|..+|.+++..
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 567899 9999999999999999995 45689999866531 1 11 3345799999999999999864
Q ss_pred -CeeEEEE
Q psy230 117 -MESEMVC 123 (222)
Q Consensus 117 -~~~~Ls~ 123 (222)
..+.++.
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 5666665
No 72
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=85.37 E-value=1.3 Score=36.81 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=48.3
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEE-eCCeEEEeeCC----chhHHHHHHHHHHh
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG-MNGKIWIRCES----FSDTVRVGNLIMSC 201 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG-~NG~iWi~~~~----~~~~~~i~~~i~~~ 201 (222)
..+.||+.++..++|+.+.+++.|.+ ++++.|-+- .+|.|-|.+.+ +.....+...|+.+
T Consensus 36 ~~i~IP~~kig~lIG~gGk~Ik~I~e--~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i 100 (219)
T 2e3u_A 36 EYVKIPKDRIAVLIGKKGQTKKEIEK--RTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAI 100 (219)
T ss_dssp EEEECCHHHHHHHHCGGGHHHHHHHH--HHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHhhhhhcccHHHHHHHHH--HHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999 889998888 88999999876 44444444444443
No 73
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=83.78 E-value=3 Score=30.13 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccc
Q psy230 53 VPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFE 90 (222)
Q Consensus 53 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ 90 (222)
.|++|+.|-+.|+.+.+....|+|.....+.+|++.+.
T Consensus 58 ~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~ 95 (101)
T 2bh8_A 58 NPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS 95 (101)
T ss_dssp CCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCc
Confidence 79999999999999999999999987789999987653
No 74
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=82.83 E-value=0.77 Score=35.46 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=44.1
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe-------CCeEEEeeCCchhHHHHHHHHHHhh
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM-------NGKIWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~-------NG~iWi~~~~~~~~~~i~~~i~~~e 202 (222)
.-+.|+..++.+++|+++..++.|.+ .+++.|-+-. .+.|.|.+ ++. .+.+|...+.
T Consensus 91 ~~i~vp~~~~g~iIGkgG~~Ik~i~~--~tga~I~i~~~~~~~~~~~~v~I~G-~~~---~v~~A~~~I~ 154 (160)
T 2jzx_A 91 LRLVVPASQCGSLIGKGGCKIKEIRE--STGAQVQVAGDMLPNSTERAITIAG-IPQ---SIIECVKQIC 154 (160)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHH--HHSSEECCCCCCSTTCCEEEEEEEE-CHH---HHHHHHHHHH
T ss_pred EEEEEChhheeeEECCCCHHHHHHHH--HhCCeEEECCCCCCCCCceEEEEEc-CHH---HHHHHHHHHH
Confidence 34788999999999999999999999 8888888865 48899999 444 3444444443
No 75
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=81.52 E-value=2 Score=33.70 Aligned_cols=57 Identities=5% Similarity=-0.007 Sum_probs=44.9
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeC--------CeEEEeeCCchhHHHHHHHHHHhh
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMN--------GKIWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~N--------G~iWi~~~~~~~~~~i~~~i~~~e 202 (222)
.-+.|+..++.+++|+++..++.|.+ .+++.|-+-.+ +.|.|.+.. . .+.+|+..+.
T Consensus 106 ~~i~Vp~~~vg~iIGkgG~~Ik~i~~--~tga~I~i~~~~~~~~~~~~~v~I~G~~-~---~v~~A~~~I~ 170 (178)
T 2anr_A 106 VKIIVPNSTAGLIIGKGGATVKAIME--QSGAWVQLSQKPDGINLQNRVVTVSGEP-E---QNRKAVELII 170 (178)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHH--HSSCEEEECCCC----CCEEEEEEESSH-H---HHHHHHHHHH
T ss_pred EEEEEchhheeeeECCCcHHHHHHHH--HHCCEEEEeCCCCCCCCCceEEEEEcCH-H---HHHHHHHHHH
Confidence 46889999999999999999999999 88888888766 588898864 2 4444444443
No 76
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.29 E-value=2.2 Score=29.85 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=43.0
Q ss_pred EEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe--CCe-EEEeeCCchhHHHHHHHHHHh
Q psy230 141 LLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM--NGK-IWIRCESFSDTVRVGNLIMSC 201 (222)
Q Consensus 141 l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~--NG~-iWi~~~~~~~~~~i~~~i~~~ 201 (222)
-+.|+..++..++|+++..++.|.+ .+++.|-+-. +++ +.|.+ +++....+...|...
T Consensus 13 ~i~VP~~~vG~IIGkgG~tIk~Iqe--~Tga~I~I~~~~~~~~v~ItG-~~e~v~~A~~~I~~~ 73 (83)
T 2dgr_A 13 QVRVPYRVVGLVVGPKGATIKRIQQ--RTHTYIVTPGRDKEPVFAVTG-MPENVDRAREEIEAH 73 (83)
T ss_dssp EEECCHHHHHHHHTTTTSSHHHHHH--HTTCEEECCCSSSCCEEEEEE-CTTTHHHHHHHHHHH
T ss_pred EEEeChHHeeeeECCCchHHHHHHH--HhCCeEEecCCCCCCeEEEEc-CHHHHHHHHHHHHHH
Confidence 4789999999999999999999999 8888887763 454 44554 445555665555543
No 77
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=77.79 E-value=3.4 Score=31.79 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=43.4
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCe-------EEEeeCCchhHHHHHHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK-------IWIRCESFSDTVRVGNLI 198 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~-------iWi~~~~~~~~~~i~~~i 198 (222)
+-+.|+..++..++|+++..++.|.+ .+++.|-+-.++. |-|.+ ++..+..+...|
T Consensus 5 ~~~~ip~~~~g~iIGk~G~~Ik~i~~--~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I 67 (163)
T 3krm_A 5 VQVFIPAQAVGAIIGKKGQHIKQLSR--FASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRI 67 (163)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHH--HHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHH
T ss_pred EEEEechhhcceeECCCcHHHHHHHH--HHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHH
Confidence 34789999999999999999999999 8899998888764 78887 444344333333
No 78
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=77.35 E-value=4.5 Score=31.50 Aligned_cols=45 Identities=4% Similarity=0.004 Sum_probs=38.2
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEe-C-----CeEEEeeC
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM-N-----GKIWIRCE 186 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~-N-----G~iWi~~~ 186 (222)
+-+.|+..++.+++|+++..++.|.+ .+++.|-|-. + ..|.|.+.
T Consensus 5 ~~~~vp~~~vg~iIGkgG~~Ik~i~~--~tg~~I~i~~~~~~~~~r~v~I~G~ 55 (174)
T 1j4w_A 5 IDVPIPRFAVGIVIGRNGEMIKKIQN--DAGVRIQFKPDDGTTPERIAQITGP 55 (174)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHH--HHCCEEEEECCTTSCSEEEEEEEEC
T ss_pred EEEEEChhheeeeecCCchHHHHHHH--HhCCEEEEecCCCCCCccEEEEEeC
Confidence 35789999999999999999999999 8888888864 3 37888886
No 79
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=77.23 E-value=3.8 Score=31.36 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=39.3
Q ss_pred EEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC----eEEEeeC
Q psy230 141 LLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG----KIWIRCE 186 (222)
Q Consensus 141 l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG----~iWi~~~ 186 (222)
-+.|++.++.+++|+++..++.|.+ .+++.|-+-.+| .|-|.+.
T Consensus 8 ~~~vp~~~~g~iIGkgG~~Ik~i~~--~tg~~I~i~~~~~~~r~v~I~G~ 55 (160)
T 2jzx_A 8 RLLMHGKEVGSIIGKKGESVKKMRE--ESGARINISEGNCPERIITLAGP 55 (160)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHH--HHCSEEEEECCTTTEEEEEEEEE
T ss_pred EEEEchhheeeeECCCcHHHHHHHH--HHCCEEEEcCCCCCceEEEEEeC
Confidence 4789999999999999999999999 888888888887 8888885
No 80
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=76.79 E-value=4 Score=31.88 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=43.1
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCC---------eEEEeeCCchhHHHHHHHHH
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG---------KIWIRCESFSDTVRVGNLIM 199 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG---------~iWi~~~~~~~~~~i~~~i~ 199 (222)
+-+.|+..++.+++|+++..++.|.+ .+++.|-+-..+ .|.|.+. ......+...|.
T Consensus 8 ~~i~vp~~~ig~iIGkgG~~Ik~i~~--~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~ 73 (178)
T 2anr_A 8 LKVLIPSYAAGSIIGKGGQTIVQLQK--ETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIA 73 (178)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHH--HHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEEChhHeeeeECCCcHHHHHHHH--HhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHH
Confidence 34789999999999999999999999 888888887765 5778775 333333433343
No 81
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=74.46 E-value=9.5 Score=31.23 Aligned_cols=75 Identities=8% Similarity=0.007 Sum_probs=49.6
Q ss_pred EEEEccccccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeecccccc------cc--c-----cCCcCCCCCCEEEEE
Q psy230 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEG------AT--K-----KNPPKVETGDVVAGK 109 (222)
Q Consensus 43 v~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g------at--k-----~~r~~l~~GDlV~Ar 109 (222)
++|.-.---+.|.+|+++.|+|+.++.+...+-+-....+.+|....+. .. . .....-++|+-|+-|
T Consensus 116 ~~V~~~~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFr 195 (214)
T 2rf4_A 116 TWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFT 195 (214)
T ss_dssp EEEEEEEEEECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEE
T ss_pred EEEEEEEEEEecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEE
Confidence 4444433357899999999999999999888866666667777543321 11 0 001112369999999
Q ss_pred EEecCCCC
Q psy230 110 LLTANKDM 117 (222)
Q Consensus 110 V~~~~~~~ 117 (222)
|.++.-+.
T Consensus 196 V~~~~~~~ 203 (214)
T 2rf4_A 196 VRNVHTTG 203 (214)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99886443
No 82
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=71.33 E-value=6.5 Score=38.27 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=46.1
Q ss_pred CEEEEEEEEEecceEEEEECC-CCCeeeeccccc--cc-------c-----cc----CCcCCCCCCEEEEEEEecCCC--
Q psy230 58 DLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAFE--GA-------T-----KK----NPPKVETGDVVAGKLLTANKD-- 116 (222)
Q Consensus 58 DiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~--ga-------t-----k~----~r~~l~~GDlV~ArV~~~~~~-- 116 (222)
...-|+|+++....+.|.|.. ...|.+|++.+. .. . ++ ....|++||-|..+|.+++..
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 799999999999999999976 568999987653 10 0 12 257899999999999998765
Q ss_pred --CeeEEEE
Q psy230 117 --MESEMVC 123 (222)
Q Consensus 117 --~~~~Ls~ 123 (222)
..+.|+.
T Consensus 751 ~~~kI~lsl 759 (760)
T 2vnu_D 751 SKRKAELLL 759 (760)
T ss_dssp -CCEEEC--
T ss_pred cCCcEEEEe
Confidence 4555553
No 83
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=69.03 E-value=1.3 Score=43.22 Aligned_cols=59 Identities=7% Similarity=0.138 Sum_probs=8.5
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhhc
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCEL 203 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e~ 203 (222)
..++|+|.+++.++|+++.+++.|-+ .++..|-+.-+|.|-|.+.+.. .+..|+..++.
T Consensus 572 ~~~~i~~~ki~~vig~gg~~i~~i~~--~tg~~idi~ddG~v~I~~~~~~---~~~~A~~~i~~ 630 (726)
T 4aid_A 572 ETINIPTDKIREVIGSGGKVIREIVA--TTGAKVDINDDGVVKVSASDGA---KIKAAIDWIKS 630 (726)
T ss_dssp --------------------------------------------CCSCHH---HHHHHHHC---
T ss_pred EEEeCCHHHHHhhcCCCchhHHHHHH--HHCCceeEECCceEEEEeCCHH---HHHHHHHHHHH
Confidence 56889999999999999999999999 9999999999999999998876 34444444443
No 84
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=62.91 E-value=16 Score=36.68 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=51.7
Q ss_pred CCEEEEEEEEEecceEEEEECC-CCCeeeeccccc--cc----------c--cc----CCcCCCCCCEEEEEEEecCCC-
Q psy230 57 GDLVIGVVTSRVGDNYRVDIGS-HDPAVLSYLAFE--GA----------T--KK----NPPKVETGDVVAGKLLTANKD- 116 (222)
Q Consensus 57 GDiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~--ga----------t--k~----~r~~l~~GDlV~ArV~~~~~~- 116 (222)
|...-|+|+++....+.|.|.. ...|.+|++.+. .. . ++ ....|++||-|..+|.+++..
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 8899999999999999999976 567999987654 11 0 12 247899999999999988752
Q ss_pred ---CeeEEEE
Q psy230 117 ---MESEMVC 123 (222)
Q Consensus 117 ---~~~~Ls~ 123 (222)
..+.|++
T Consensus 967 ~~~~kI~Lsl 976 (977)
T 2wp8_J 967 TSKRKAELLL 976 (977)
T ss_dssp SCCCCCCEEE
T ss_pred cCCCceEEEe
Confidence 3566654
No 85
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=62.50 E-value=13 Score=29.95 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=50.5
Q ss_pred hhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Q psy230 148 LCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCEL-LSYEEILNLCESIHIRF 220 (222)
Q Consensus 148 ~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e~-~~~~~~~~~~~~~~~~l 220 (222)
..-|++|+++..++.|.. .++|+|.|.-+ .|.|-+ +.+....+-++|..+-. -..+-+..++++..+.+
T Consensus 108 ~~GrIIGk~G~tik~iE~--~Tg~~I~v~~~-~v~i~G-~~~~i~~Ar~~i~~li~g~~h~~vy~~~~~~~~~~ 177 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEE--MTDTYINVGEY-EVAIIG-DYERAMAAKQAIEMLAEGRMHSTVYRHLERIMREI 177 (191)
T ss_dssp HHHHHHCGGGHHHHHHHH--HHTCEEEECSS-EEEEEE-EHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhheeCCCccHHHHHHH--HHCceEEEcCC-EEEEEe-ChHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Confidence 567899999999999998 99999999877 777766 44456666677776643 22356777777665554
No 86
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=56.31 E-value=32 Score=23.75 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=35.4
Q ss_pred EEEEEEEEe-cceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEe
Q psy230 60 VIGVVTSRV-GDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112 (222)
Q Consensus 60 VIG~V~~v~-~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~ 112 (222)
+-|+|++.. +.+|.|....... .+- -..|-.++++-.+.+||.|..+...
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~-~~c--~i~GK~Rk~~I~Il~GD~V~ve~~~ 66 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHK-VLA--HISGKMRQHYIRILPEDRVVVELSP 66 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCE-EEE--EECHHHHHTTCCCCTTCEEEEEEET
T ss_pred EEEEEEEEcCCCEEEEEeCCCCE-EEE--EeCcceecCCccCCCCCEEEEEECc
Confidence 579999997 8999999865321 111 2335556667779999999888654
No 87
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.20 E-value=57 Score=23.92 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=37.5
Q ss_pred cCCCCCCEEEEEEEEE-ecceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEe
Q psy230 52 YVPTRGDLVIGVVTSR-VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v-~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~ 112 (222)
..|.. +-++|+|++. .+..|.|.+..-..-.-+ ++|..++ +-.+.+||.|..+...
T Consensus 10 ~~p~e-ge~~g~V~~~lgn~~f~V~l~nG~~~la~---i~GK~Rk-~IwI~~GD~VlVe~~~ 66 (111)
T 2dgy_A 10 IVPSN-QQQIVRVLRTPGNNLHEVETAQGQRFLVS---MPSKYRK-NIWIKRGDFLIVDPIE 66 (111)
T ss_dssp CCCCS-SCEEEEEEECCSSSEEEEECTTSCEEEEE---CCTTCCS-CCCCCSSCEEEEEECS
T ss_pred cCCCC-CeEEEEEEEeCCCCEEEEEeCCCCEEEEE---echhhcc-cEEEcCCCEEEEEecc
Confidence 35664 5689999998 557889888653332222 2344443 7778899999998643
No 88
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=55.24 E-value=22 Score=26.31 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=35.7
Q ss_pred cCCCCCCEEEEEEEEEec-ceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEE
Q psy230 52 YVPTRGDLVIGVVTSRVG-DNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111 (222)
Q Consensus 52 Y~P~vGDiVIG~V~~v~~-~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~ 111 (222)
..|..|. ++|+|+...+ ..|.|....-.. ++ -..+|-.++ +-...+||.|..+..
T Consensus 27 ~~~~~~e-~~G~Vi~~lgn~~y~V~~~dG~~-~l--~~i~GK~Rk-~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 27 VFKEEGQ-EYGQVQRMLGNGRLDAYCFDGQK-RL--CHIRGKMRK-KVWVNPGDIVLVSLR 82 (117)
T ss_dssp CCCCTTE-EEEEEEEEEETTEEEEEETTSCE-EE--EECCHHHHH-HSCCCTTCEEEEEEC
T ss_pred cCCCCCE-EEEEEEEEcCCCEEEEEeCCCCE-EE--EEEcCceec-CCcCCCCCEEEEEEE
Confidence 3677665 4899999988 999997744211 11 123344444 555669999987764
No 89
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=55.10 E-value=17 Score=26.10 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=34.2
Q ss_pred EEechhhhhhccCCChhHHHHhhhcCCC-cEEEEEE-eCCeEEEeeC
Q psy230 142 LHTSISLCRKLLNPKCPLLKQLAKRSRQ-KMELSIG-MNGKIWIRCE 186 (222)
Q Consensus 142 ~~v~~~~~~rl~~~~~~~l~~l~~~~~~-~~ei~vG-~NG~iWi~~~ 186 (222)
+.|++++.+.++|+++.-++.|.+ .+ .+.|-+- .+..|-|.++
T Consensus 31 i~vp~~~h~~IIG~~G~~Ik~i~~--~~~~v~I~fp~~~~~ItI~G~ 75 (102)
T 2ctf_A 31 VAAPSWLHRFIIGKKGQNLAKITQ--QMPKVHIEFTEGEDKITLEGP 75 (102)
T ss_dssp EECCSTTHHHHHTTTTCHHHHHHH--HCSSSEEEECSSSCEEEEEEC
T ss_pred EEeCHHHHhhhcCCCCccHHHHHH--HcCCcEEEeCCCCCEEEEECC
Confidence 789999999999999999999977 43 5666554 3557888886
No 90
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=54.35 E-value=24 Score=28.94 Aligned_cols=69 Identities=7% Similarity=-0.047 Sum_probs=47.4
Q ss_pred hhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchhHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHh
Q psy230 148 LCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRVGNLIMSCE-LLSYEEILNLCESIHIRF 220 (222)
Q Consensus 148 ~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~~~~i~~~i~~~e-~~~~~~~~~~~~~~~~~l 220 (222)
.+-|++|+++..++.|.. .++|+|.|. .-.|.|-+. .+....+.++|..+- .-+...+-..+++..+.+
T Consensus 139 ~~GriIGk~G~tik~ie~--~Tg~~I~v~-~~~v~i~G~-~~~i~~A~~~i~~li~g~~~~~vy~~l~~~~~~~ 208 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEE--MSGASVSVY-GKTVAIIGN-PIQIEIAKTAIEKLARGSPHGSVYRYLERRKKDL 208 (219)
T ss_dssp HHHHHHCGGGHHHHHHHH--HHCCEEEEE-TTEEEEEEC-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHC----
T ss_pred hhheeECCCchHHHHHHH--HhCceEEEC-CeEEEEEeC-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 567799999999999999 999999995 457888774 444666667776653 334555666666655544
No 91
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=53.69 E-value=17 Score=27.64 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCCCCEE---------EEEEEEEecceEEEEECC----CCCeeee
Q psy230 54 PTRGDLV---------IGVVTSRVGDNYRVDIGS----HDPAVLS 85 (222)
Q Consensus 54 P~vGDiV---------IG~V~~v~~~~~~VdI~~----~~~a~L~ 85 (222)
.++||+| ||.|++.+++.+.|.+-+ |..|=||
T Consensus 8 ~~~g~~v~~~yKTG~YigeI~e~~~~~~lVkVlaVlKHP~QGDLH 52 (130)
T 1y71_A 8 FEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVLKHPVQGDLH 52 (130)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCCC----
T ss_pred CCccceeEEEEecceeEEEEEeecCCeEEEEEEEEecCCCccCCC
Confidence 6889999 899999999999999865 6667776
No 92
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=52.32 E-value=15 Score=21.35 Aligned_cols=21 Identities=19% Similarity=-0.031 Sum_probs=17.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q psy230 198 IMSCELLSYEEILNLCESIHI 218 (222)
Q Consensus 198 i~~~e~~~~~~~~~~~~~~~~ 218 (222)
|...+.++++|..+.+++++.
T Consensus 12 vLh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 12 ALHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHCTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHhHHHHHhc
Confidence 456678899999999999975
No 93
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=50.43 E-value=31 Score=24.30 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=31.5
Q ss_pred CCCeecCCCCCCeeeCCCeEE-eCCEEEEEEeeEEEEec----CcEEEEEc
Q psy230 2 AGDTLSLNAEPRLILGPGLRR-ESSAILVSQSGILRHAK----PFTYYVDY 47 (222)
Q Consensus 2 PGd~l~~~~~~~~~~G~G~y~-~~~~i~as~~G~l~~~~----~~~v~V~~ 47 (222)
||..|..--...|-||.++-. .|..++|.+-|.|+... .+.++|.|
T Consensus 33 aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~VsV~p 83 (85)
T 3v2d_0 33 AGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRP 83 (85)
T ss_dssp TTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECGGGCEEEEEEE
T ss_pred CCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcCCCCEEEEEEE
Confidence 566555211135788888765 57899999999998752 34577776
No 94
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=48.36 E-value=91 Score=23.95 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=38.0
Q ss_pred CCCCCCEEEEEEEEEe-cceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEe
Q psy230 53 VPTRGDLVIGVVTSRV-GDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLT 112 (222)
Q Consensus 53 ~P~vGDiVIG~V~~v~-~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~ 112 (222)
.|. .+-++|+|+... +..|.|.+..-..-+-+ ++|..++ +-.+.+||.|..+...
T Consensus 27 ~p~-ege~~g~V~e~lgn~~f~V~l~nG~~~La~---I~GKmRk-~IwI~~GD~VlVe~~~ 82 (143)
T 1d7q_A 27 FKE-DGQEYAQVIKMLGNGRLEAMCFDGVKRLCH---IRGKLRK-KVWINTSDIILVGLRD 82 (143)
T ss_dssp CCC-TTEEEEEEEEECSSSEEEEEETTTEEEEEE---CCSGGGG-SCCCCTTCEEEEECSS
T ss_pred CCC-CCEEEEEEEEEcCCCEEEEEeCCCCEEEEE---eccccee-eEEecCCCEEEEeecc
Confidence 555 567999999995 57899988653322222 3344455 7889999999988643
No 95
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=48.20 E-value=34 Score=22.72 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=31.6
Q ss_pred EEEEEEEEec-ceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEE
Q psy230 60 VIGVVTSRVG-DNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111 (222)
Q Consensus 60 VIG~V~~v~~-~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~ 111 (222)
+.|+|++..+ ..|.|...... -.+ -..+|..++.+-...+||.|..++.
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~~g~-~~~--~~i~Gk~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELENGH-VVT--AHISGKMRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp CCEEEEEECSSSEEEEEETTSC-EEE--EEECSSGGGTTCCCCTTCEECCEEC
T ss_pred EEEEEEEEeCCcEEEEEECCCC-EEE--EEEcceEeccCccCCCCCEEEEEEe
Confidence 4699999988 99999873311 111 1234555554455669999987754
No 96
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=47.48 E-value=31 Score=28.20 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=47.7
Q ss_pred EEEEEecCCCCeeEEEEecCCCccccCccc-CCceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEee
Q psy230 107 AGKLLTANKDMESEMVCVDSRGKEFIMGIL-NDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185 (222)
Q Consensus 107 ~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L-~~G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~ 185 (222)
.|+|..-.++.++.++.-- ++-|.- ..-.-++....+ -.+||.++++ +..|++.|-.+|-+||+.
T Consensus 5 ~a~v~R~T~ET~I~v~l~L-----DG~g~~~~~~~~i~TGigF-------lDHML~~la~--Hg~~dL~v~a~GDl~iD~ 70 (202)
T 1rhy_A 5 IASVERTTSETHISCTIDL-----DHIPGVTEQKINVSTGIGF-------LDHMFTALAK--HGGMSLQLQCKGDLHIDD 70 (202)
T ss_dssp EEEEEEECSSCEEEEEEES-----CCCTTTCCCCEEEECSCHH-------HHHHHHHHHH--HTTCEEEEEEESCC----
T ss_pred eEEEEecCCceEEEEEEEe-----CCCCCcccceeeeeCCCcH-------HHHHHHHHHH--HcCCceEEEEecCCcccc
Confidence 4777777777777777632 222210 000111111122 1489999999 999999999999999986
Q ss_pred C--CchhHHHHHHHHHHh
Q psy230 186 E--SFSDTVRVGNLIMSC 201 (222)
Q Consensus 186 ~--~~~~~~~i~~~i~~~ 201 (222)
+ -+...+.+..|+++.
T Consensus 71 HHtvED~gI~LG~Al~~A 88 (202)
T 1rhy_A 71 HHTAEDCALALGEAFKKA 88 (202)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred CccHHHhhhhHHHHHHHH
Confidence 4 234456778888765
No 97
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=47.07 E-value=20 Score=25.02 Aligned_cols=35 Identities=11% Similarity=0.296 Sum_probs=25.0
Q ss_pred cCCcCCCCCCEEEEEEEecCCCCe------eEEEEecCCCc
Q psy230 95 KNPPKVETGDVVAGKLLTANKDME------SEMVCVDSRGK 129 (222)
Q Consensus 95 ~~r~~l~~GDlV~ArV~~~~~~~~------~~Ls~~~~~~~ 129 (222)
..|+.++|||-|..|+...+.+.. +.++..|++|+
T Consensus 8 tDr~iYrPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~ 48 (102)
T 2p9r_A 8 TDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGN 48 (102)
T ss_dssp ESCSEECTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSC
T ss_pred CCCcccCCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCC
Confidence 468899999999999987654322 45666666553
No 98
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=46.23 E-value=29 Score=23.94 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=30.1
Q ss_pred CCCeecCCCCCCeeeCCCeEE-eCCEEEEEEeeEEEEec-----CcEEEEEc
Q psy230 2 AGDTLSLNAEPRLILGPGLRR-ESSAILVSQSGILRHAK-----PFTYYVDY 47 (222)
Q Consensus 2 PGd~l~~~~~~~~~~G~G~y~-~~~~i~as~~G~l~~~~-----~~~v~V~~ 47 (222)
||..|..--...|-||.++-. .|..++|.+-|.|+... .+.++|.|
T Consensus 24 aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p 75 (76)
T 3r8s_W 24 AGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEA 75 (76)
T ss_dssp TTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEEC
T ss_pred cCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEe
Confidence 555554211124778888765 47899999999998751 23466665
No 99
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=45.90 E-value=23 Score=31.62 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=45.6
Q ss_pred ceEEEechhhhhhccCCCh--hHHHHhhhcCCCcEEEEEEeCC----------eEEEeeCCchhHHHHHHHHHHhh
Q psy230 139 GYLLHTSISLCRKLLNPKC--PLLKQLAKRSRQKMELSIGMNG----------KIWIRCESFSDTVRVGNLIMSCE 202 (222)
Q Consensus 139 G~l~~v~~~~~~rl~~~~~--~~l~~l~~~~~~~~ei~vG~NG----------~iWi~~~~~~~~~~i~~~i~~~e 202 (222)
..-++|++...+.++|+++ .+++.|.+ .+++.|.+=..+ .|||.+ +.+.+..+..+|..+-
T Consensus 187 s~~v~V~~~~H~~IIGk~G~n~~IkkIr~--eTGv~I~FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 187 TLHFTLSTYYVDQVLGSSSTAQLMPVIER--ETTTIISYPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEEEGGGHHHHTCCTTSCCHHHHHHH--HHTCEEECC---------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred EEEEEeCHHHHHHhhcCCCcchHHHHHHH--hhCCEEECCCCCCcccccCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 3567899999999999987 67899988 888998875433 599999 4555666666666653
No 100
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=44.88 E-value=81 Score=22.41 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=15.8
Q ss_pred CCCCCEEEEE---EEecCCCCeeEEEE
Q psy230 100 VETGDVVAGK---LLTANKDMESEMVC 123 (222)
Q Consensus 100 l~~GDlV~Ar---V~~~~~~~~~~Ls~ 123 (222)
|.+||+|+.+ +.... +.++|++
T Consensus 60 l~~Gdvv~i~ng~v~~~~--g~~~L~v 84 (106)
T 2k75_A 60 LQDSDVVRIDNARVAQFN--GYLSLSV 84 (106)
T ss_dssp CCTTEEEEEEEEEEEEET--TEEEEEE
T ss_pred cCCCCEEEEEeeEEeEEC--CEEEEEE
Confidence 9999999755 44443 4678886
No 101
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=44.33 E-value=34 Score=25.08 Aligned_cols=45 Identities=7% Similarity=0.013 Sum_probs=32.7
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEE-eCCeEEEeeCCchh
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG-MNGKIWIRCESFSD 190 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG-~NG~iWi~~~~~~~ 190 (222)
++.-++|..+.+++.... .++- ..||.|.|= .+|.+||...++..
T Consensus 53 il~~cnP~~a~~~l~~~p----~~g~--~lPcrv~V~e~~~~v~v~~~~p~~ 98 (129)
T 1j3m_A 53 ILGACNPNLAARALEALP----EIGL--LLPCNVVLREAEEGVEVLIQDPKE 98 (129)
T ss_dssp EEEEECHHHHHHHHHHCG----GGGG--GCSEEEEEEEETTEEEEEECCHHH
T ss_pred EEEECCHHHHHHHHHhCH----HHHh--hcCcEEEEEEeCCeEEEEEeCHHH
Confidence 445789999988875332 2333 679999875 57889999998863
No 102
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=43.16 E-value=35 Score=24.99 Aligned_cols=45 Identities=16% Similarity=0.011 Sum_probs=32.5
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEE-eCCeEEEeeCCchh
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG-MNGKIWIRCESFSD 190 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG-~NG~iWi~~~~~~~ 190 (222)
.+.-++|..+.+++.... .++- ..||.|.|= .+|.+||...++..
T Consensus 56 il~~cnp~~a~~~l~~~p----~~g~--~lPcrv~v~e~~g~~~v~~~~p~~ 101 (130)
T 1q9u_A 56 ILEVCNPQEAARVLNENL----LVGY--FLPCKLVVYQENGTTKIGMPKPTM 101 (130)
T ss_dssp EEEEECHHHHHHHHHHCG----GGGG--GCSEEEEEEEETTEEEEEEECHHH
T ss_pred EEEEeCHHHHHHHHHhCH----HHHh--hcCeEEEEEEcCCEEEEEEeCHHH
Confidence 456689999988875333 2333 678888663 58999999998863
No 103
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=40.04 E-value=11 Score=26.79 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.5
Q ss_pred CCcCCCCCCEEEEEEEec
Q psy230 96 NPPKVETGDVVAGKLLTA 113 (222)
Q Consensus 96 ~r~~l~~GDlV~ArV~~~ 113 (222)
|...|++||||.|++...
T Consensus 2 ~p~~f~~GdlVwaK~~g~ 19 (94)
T 3qby_A 2 MPHAFKPGDLVFAKMKGY 19 (94)
T ss_dssp CCCCCCTTCEEEECCTTS
T ss_pred CCCcCccCCEEEEecCCC
Confidence 456799999999998543
No 104
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=39.79 E-value=37 Score=24.21 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCeecCCCCCCeeeCCCeEE-eCCEEEEEEeeEEEEec----CcEEEEEcc
Q psy230 2 AGDTLSLNAEPRLILGPGLRR-ESSAILVSQSGILRHAK----PFTYYVDYI 48 (222)
Q Consensus 2 PGd~l~~~~~~~~~~G~G~y~-~~~~i~as~~G~l~~~~----~~~v~V~~~ 48 (222)
||..|..--...|-||.++-. .|..++|.+.|.|+... .+.++|.|.
T Consensus 33 aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~V~V~p~ 84 (91)
T 2zjr_T 33 AGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKGKGARFISIEAA 84 (91)
T ss_dssp SSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEETTTEEEEEECCC
T ss_pred CCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcCCCcEEEEEEeC
Confidence 566665321135778888765 47899999999998751 245777763
No 105
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=37.98 E-value=6.8 Score=38.05 Aligned_cols=50 Identities=8% Similarity=0.124 Sum_probs=0.0
Q ss_pred ceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCchh
Q psy230 139 GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSD 190 (222)
Q Consensus 139 G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~~ 190 (222)
-..++++|.+++.++|+++..++.|-+ .+++.|=++-+|.|.|...+...
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~--~~G~~IdI~~dg~v~I~~~~~~~ 610 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTE--ETGTTIEIEDDGTVKIAATDGEK 610 (723)
T ss_dssp ----------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeeh--hhCceEEecCCccEEEecCCHHH
Confidence 467889999999999999999999988 88888999999999999877653
No 106
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=37.06 E-value=33 Score=24.86 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=39.1
Q ss_pred cCCCC-CCEEEEEEEEE-ecceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEecC
Q psy230 52 YVPTR-GDLVIGVVTSR-VGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114 (222)
Q Consensus 52 Y~P~v-GDiVIG~V~~v-~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~ 114 (222)
-.|.. ..-++|+|++. .+..|.|....-..-.-+ ++|..++ +-.+.+||.|..+....+
T Consensus 13 ~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~---i~GKmRk-~IwI~~GD~VlVe~~~yd 73 (102)
T 1jt8_A 13 RIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGR---IPGRLKN-RIWVREGDVVIVKPWEVQ 73 (102)
T ss_dssp CCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEE---CCHHHHH-HHCCCSCEEEEECCBCCT
T ss_pred ccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEE---Eccccee-eEEecCCCEEEEEeccCC
Confidence 36652 56799999998 557899988553322222 2344445 777899999998865443
No 107
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=36.70 E-value=88 Score=22.05 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=36.7
Q ss_pred ceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEE--EeCCeEEEeeCCchhHHHHHHHHHHhhcC
Q psy230 139 GYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSI--GMNGKIWIRCESFSDTVRVGNLIMSCELL 204 (222)
Q Consensus 139 G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~v--G~NG~iWi~~~~~~~~~~i~~~i~~~e~~ 204 (222)
+.++.+.|.... .+.+.|.+ --++||.. +..|+|-+..+.+. ...+.+.|.++..+
T Consensus 9 slvV~~~p~~~~-------~V~~~L~~--ipgvEi~~~~~~~GkiVV~iEa~~-~~~l~~~i~~I~~i 66 (95)
T 2jsx_A 9 SLVVQAKSERIS-------DISTQLNA--FPGCEVAVSDAPSGQLIVVVEAED-SETLIQTIESVRNV 66 (95)
T ss_dssp EEEEEECTTSHH-------HHHHHHTT--STTEEEEEEETTTTEEEEEEEESS-HHHHHHHHHHHTTS
T ss_pred EEEEEECCCCHH-------HHHHHHHC--CCCeEEEEecCCCCCEEEEEEeCC-HHHHHHHHHHHhcC
Confidence 567777777654 56777877 77899854 45899998765543 33444455555543
No 108
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=35.84 E-value=86 Score=26.38 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=20.9
Q ss_pred eeccccccccccCCcCCCCCCEEEEE---EEecCCCCeeEEEE
Q psy230 84 LSYLAFEGATKKNPPKVETGDVVAGK---LLTANKDMESEMVC 123 (222)
Q Consensus 84 L~~~~f~gatk~~r~~l~~GDlV~Ar---V~~~~~~~~~~Ls~ 123 (222)
|.+.-|......+...+.+||+|+.+ |.+.+. ++.+.+
T Consensus 52 l~v~iF~~~~~~LP~v~~~GDII~l~~vki~~~~g--~~~~v~ 92 (294)
T 1xjv_A 52 LTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVYKK--ETQGIT 92 (294)
T ss_dssp EEEEEEESSGGGSCCCCSTTCEEEEEEEEEEEETT--EEEEEE
T ss_pred EEEEEECCChHHCCCCCCCCCEEEEEEEEEEEECC--eEEEEc
Confidence 55444442222333344999999876 665543 444443
No 109
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=34.77 E-value=12 Score=28.91 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.5
Q ss_pred ccCCcCCCCCCEEEEEEEe
Q psy230 94 KKNPPKVETGDVVAGKLLT 112 (222)
Q Consensus 94 k~~r~~l~~GDlV~ArV~~ 112 (222)
..|...|++||||.|++..
T Consensus 17 ~~~~~~f~~GdlVwaK~~g 35 (153)
T 4fu6_A 17 QGMTRDFKPGDLIFAKMKG 35 (153)
T ss_dssp TCSGGGCCTTCEEEECCTT
T ss_pred hhcccCCCCCCEEEEeCCC
Confidence 4566779999999999854
No 110
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=34.52 E-value=55 Score=22.82 Aligned_cols=42 Identities=19% Similarity=0.430 Sum_probs=26.1
Q ss_pred ccCCcCCCCCCEEEEEEEe----cCCCCeeEEEEecCCCccccCcccCCceEE
Q psy230 94 KKNPPKVETGDVVAGKLLT----ANKDMESEMVCVDSRGKEFIMGILNDGYLL 142 (222)
Q Consensus 94 k~~r~~l~~GDlV~ArV~~----~~~~~~~~Ls~~~~~~~~~~~G~L~~G~l~ 142 (222)
++|-..|++||.+..+=.. .++....+++++. .|+- .+|+++
T Consensus 32 R~nDr~~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i~------d~~~-~~gyvv 77 (83)
T 3iuw_A 32 RKNDRNFQVGDILILEEYMNGMYLDDECEAEVIYIT------DYAQ-REGYVV 77 (83)
T ss_dssp EECCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEEE------CTTC-CTTEEE
T ss_pred EecccCCCCCCEEEEEEccCCCccCcEEEEEEEEEc------ccCC-CCCEEE
Confidence 4555569999999876442 2333345677763 5555 677664
No 111
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=29.54 E-value=36 Score=25.60 Aligned_cols=36 Identities=36% Similarity=0.532 Sum_probs=25.7
Q ss_pred eEEEEec------CcEEEEEccc-cccCCCCCCEEEEEEEEEe
Q psy230 33 GILRHAK------PFTYYVDYIQ-RRYVPTRGDLVIGVVTSRV 68 (222)
Q Consensus 33 G~l~~~~------~~~v~V~~~~-~~Y~P~vGDiVIG~V~~v~ 68 (222)
|+|+..+ +.=++|.|.+ +||--+.||.|.|+|..-.
T Consensus 63 GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr~~~ 105 (130)
T 1a62_A 63 GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPK 105 (130)
T ss_dssp EEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEECCC
T ss_pred EEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEeCCC
Confidence 6666541 2346787754 5799999999999997543
No 112
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=27.91 E-value=1.6e+02 Score=20.81 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=16.3
Q ss_pred CCCCCCEEEEE--EEecCCCCeeEEEE
Q psy230 99 KVETGDVVAGK--LLTANKDMESEMVC 123 (222)
Q Consensus 99 ~l~~GDlV~Ar--V~~~~~~~~~~Ls~ 123 (222)
.+.+||+|+-+ |.. ...+.++|++
T Consensus 66 ~l~~Gdvv~i~g~vk~-~~~g~~eL~~ 91 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIRE-GYYGGLECTA 91 (105)
T ss_dssp CCCTTCEEEEEEEEEE-CTTSSEEEEE
T ss_pred ccCCCCEEEEEEEEEE-ccCCCEEEEe
Confidence 69999988653 333 3345788887
No 113
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=27.38 E-value=35 Score=24.53 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=13.1
Q ss_pred CcCCCCCCEEEEEEEe
Q psy230 97 PPKVETGDVVAGKLLT 112 (222)
Q Consensus 97 r~~l~~GDlV~ArV~~ 112 (222)
...|++||+|.|++..
T Consensus 4 ~~~~~~GdlVwaK~~g 19 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSG 19 (109)
T ss_dssp CCCCCTTCEEEEEETT
T ss_pred cccCCCCCEEEEEeCC
Confidence 4568999999999853
No 114
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=27.32 E-value=23 Score=29.31 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=44.1
Q ss_pred EEEEEecCCCCeeEEEEecCCCccccCcccCCceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeC
Q psy230 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186 (222)
Q Consensus 107 ~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~ 186 (222)
.|+|..-.+..++.++.-- + -|+ .-++....+. .+||.+|++ +..|++.|-.+|-+||+..
T Consensus 31 ~a~v~R~T~ET~I~v~l~L-----D-~G~----~~i~TGigFl-------DHML~~la~--Hg~~dL~v~a~GDl~iD~H 91 (221)
T 2ae8_A 31 IYQKQRNTAETQLNISISD-----D-QSP----SHINTGVGFL-------NHMLTLFTF--HSGLSLNIEAQGDIDVDDH 91 (221)
T ss_dssp EEEEEC----CEEEEEEES-----S-CCC----CEEECSCHHH-------HHHHHHHHH--HHCCEEEEEEECC----HH
T ss_pred eEEEEEeCCcEEEEEEEEe-----C-CCc----ceecCCCcHH-------HHHHHHHHH--HcCCceEEEEeeCCcccCC
Confidence 7888887777777777631 1 121 1122222221 489999999 9999999999999999863
Q ss_pred --CchhHHHHHHHHHHh
Q psy230 187 --SFSDTVRVGNLIMSC 201 (222)
Q Consensus 187 --~~~~~~~i~~~i~~~ 201 (222)
-+...+.+.+|+++.
T Consensus 92 HTvEDvgI~LGqAl~~A 108 (221)
T 2ae8_A 92 HVTEDIGIVIGQLLLEM 108 (221)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhHHHHHHHHH
Confidence 233456777777764
No 115
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=26.76 E-value=1e+02 Score=20.95 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=25.4
Q ss_pred EEEEEEecceEEEEECCCC-CeeeeccccccccccCCcCCCCCCEEEEEE
Q psy230 62 GVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGKL 110 (222)
Q Consensus 62 G~V~~v~~~~~~VdI~~~~-~a~L~~~~f~gatk~~r~~l~~GDlV~ArV 110 (222)
|+|+++.+....||.++.. ...|.+. +..++||.|.-.+
T Consensus 7 ~kVvei~~~~A~vd~~Gv~r~V~l~Lv----------~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 7 GKVIEVNGPVAVVDFGGVKREVRLDLM----------PDTKPGDWVIVHT 46 (75)
T ss_dssp EEEEEEETTEEEEEETTEEEEEECTTS----------TTCCTTCEEEEET
T ss_pred EEEEEECCCEEEEEcCCEEEEEEEEEe----------CCCCCCCEEEEec
Confidence 7888887778999987622 2233221 2357999987653
No 116
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=26.72 E-value=80 Score=23.25 Aligned_cols=20 Identities=10% Similarity=0.355 Sum_probs=15.3
Q ss_pred CCcEEEEEEeCC-eEEEeeCC
Q psy230 168 RQKMELSIGMNG-KIWIRCES 187 (222)
Q Consensus 168 ~~~~ei~vG~NG-~iWi~~~~ 187 (222)
++.-=.|+|.+| -+|-.+++
T Consensus 16 ~~~~aAI~g~dG~svwA~s~g 36 (127)
T 3d9y_A 16 KIDRAAIVSRAGDSVWAASAG 36 (127)
T ss_dssp SCCEEEEEETTSSCEEEECTT
T ss_pred ceeeEEEEeCCCCeEEEeCCC
Confidence 445556789999 69998875
No 117
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=26.60 E-value=85 Score=25.31 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCCCCEEEEEEEEEecc--eEEEEECCCCCeeeec
Q psy230 54 PTRGDLVIGVVTSRVGD--NYRVDIGSHDPAVLSY 86 (222)
Q Consensus 54 P~vGDiVIG~V~~v~~~--~~~VdI~~~~~a~L~~ 86 (222)
-++||+|.++|.++..+ .+.+.+.....+.+..
T Consensus 136 l~~GD~V~akVisi~~~~~~i~LS~k~~~lGVv~A 170 (209)
T 2nn6_I 136 FRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVA 170 (209)
T ss_dssp CCSSSEEEEEEEEEETTTTEEEEECCSSSCEECCC
T ss_pred cCCCCEEEEEEEEEeCCCCeEEEEEecCCCcEEEE
Confidence 37899999999999764 5888888888887764
No 118
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=26.52 E-value=36 Score=24.75 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.1
Q ss_pred CcCCCCCCEEEEEEEe
Q psy230 97 PPKVETGDVVAGKLLT 112 (222)
Q Consensus 97 r~~l~~GDlV~ArV~~ 112 (222)
...|++||||.|++..
T Consensus 17 ~~~~~~GdlVwaK~kG 32 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKG 32 (110)
T ss_dssp SSSCCTTCEEEEEETT
T ss_pred cCCCCCCCEEEEEeCC
Confidence 4468999999999854
No 119
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=26.46 E-value=44 Score=24.70 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=9.6
Q ss_pred CEEEEEEEEEe
Q psy230 58 DLVIGVVTSRV 68 (222)
Q Consensus 58 DiVIG~V~~v~ 68 (222)
|+++|+|.++.
T Consensus 13 dirVG~I~~~e 23 (118)
T 3ers_X 13 EMRVGKIVEVK 23 (118)
T ss_dssp CEEEEEEEEEE
T ss_pred eEEEEEEEEEE
Confidence 78999999984
No 120
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=26.39 E-value=1.7e+02 Score=20.49 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=36.6
Q ss_pred CCCEEEEEEEEEecc--eEEEEE-CCCCCeeeeccccccccccCCcCCCCCCEEEEEEEecCC
Q psy230 56 RGDLVIGVVTSRVGD--NYRVDI-GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115 (222)
Q Consensus 56 vGDiVIG~V~~v~~~--~~~VdI-~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~ 115 (222)
.++.+-|+|...+.+ +=.++- ....+..+|++++...-- ....+++|+.|..+|..+.+
T Consensus 13 ~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~-~~~~l~~Ge~V~g~V~~i~~ 74 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAA-VRGNPQQGDRVEGKIKSITD 74 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSC-CCCCCCTTCEEEEEEEECCS
T ss_pred ccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCc-cccCCCCCCEEEEEEEEeCC
Confidence 467788999877421 123333 345678888887753210 11568999999999988764
No 121
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=26.15 E-value=4.8 Score=39.33 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=17.5
Q ss_pred eEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeCCch
Q psy230 140 YLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFS 189 (222)
Q Consensus 140 ~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~~~~ 189 (222)
..++|+|.+++.++|+++.+++.|-+ .++..|=++..|.|.|...+..
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~--~~G~~IdI~~dG~v~Is~~~~~ 647 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQE--DTGAEITIEDDGTIYIGAADGP 647 (757)
T ss_dssp CCC------------------CTTCC--CCCSCC--------CCCBSSHH
T ss_pred EEEEEChHHeehcccccceeeehhhH--hhCCEEEecCCceEEEecCCHH
Confidence 46789999999999999999999988 8888888888999999987754
No 122
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=25.66 E-value=81 Score=21.96 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhh--cCCHHHHHHHHHHHHHHhcC
Q psy230 191 TVRVGNLIMSCE--LLSYEEILNLCESIHIRFLQ 222 (222)
Q Consensus 191 ~~~i~~~i~~~e--~~~~~~~~~~~~~~~~~l~~ 222 (222)
-..++|++.++- ..+++|...+.++|.+.|++
T Consensus 34 LMvLGNmvTNlln~~V~~~qR~~iAe~Fa~AL~~ 67 (83)
T 2jpq_A 34 LMIAGNIATNVLNQRVAASQRKLIAEKFAQALMS 67 (83)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 455677777665 46799999999999999874
No 123
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=24.70 E-value=87 Score=21.67 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhh--cCCHHHHHHHHHHHHHHhcC
Q psy230 191 TVRVGNLIMSCE--LLSYEEILNLCESIHIRFLQ 222 (222)
Q Consensus 191 ~~~i~~~i~~~e--~~~~~~~~~~~~~~~~~l~~ 222 (222)
-..++|++.++- ..+++|...+.++|.+.|++
T Consensus 34 LMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~~ 67 (80)
T 2juw_A 34 LMALGNCVTHLLERKVPSESRQAVAEQFAKALAQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 345677777665 46799999999999999874
No 124
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=24.08 E-value=23 Score=23.64 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=31.3
Q ss_pred EEEEEEEEec-ceEEEEECC--CCCeeeeccccccccccCCcCCCCCCEEEEEEE
Q psy230 60 VIGVVTSRVG-DNYRVDIGS--HDPAVLSYLAFEGATKKNPPKVETGDVVAGKLL 111 (222)
Q Consensus 60 VIG~V~~v~~-~~~~VdI~~--~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~ 111 (222)
+.|+|++..+ ..|.|.... ...+. .+|..++++-...+||.|..++.
T Consensus 9 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~-----i~Gk~Rk~~i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 9 TEGVVTEALPNATFRVKLDSGPEILAY-----ISGKMRMHYIRILPGDRVVVEIT 58 (71)
T ss_dssp CEEECCCCCTTTBCCCEESSSCBCCCE-----ECHHHHHTCCCCCTTCEEEEECC
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEE-----EcceEeccCcCCCCCCEEEEEEE
Confidence 4799999888 888887632 22232 23545555666679999987753
No 125
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=23.79 E-value=2.3e+02 Score=21.07 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=31.0
Q ss_pred EEEEccccccCCCCCCEEEEEEEEEecceEEEEECCCCCeeeeccccccccccCCcCCCCCCEEEEEEEecC
Q psy230 43 YYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114 (222)
Q Consensus 43 v~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~ 114 (222)
+.|....++-...+||+|++.|.+..++. .++-||++.|=|....
T Consensus 22 I~Vlg~~~rr~a~iGD~IvvsVK~~~p~~---------------------------~vKkg~v~~AVIVRtk 66 (122)
T 3v2d_O 22 IRVLKGSNAKYATVGDVIVASVKEAIPRG---------------------------AVKEGDVVKAVVVRTK 66 (122)
T ss_dssp EEEESTTTCCCBCTTCEEEEEEEEECSSS---------------------------SSCTTCEEEEEEEECS
T ss_pred EEEeCCCCCcccCCCCEEEEEEEEcCCCC---------------------------ccccCCEEEEEEEEeC
Confidence 34444333334799999999999866541 2567899999888754
No 126
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=23.75 E-value=23 Score=21.08 Aligned_cols=20 Identities=20% Similarity=0.031 Sum_probs=16.3
Q ss_pred HHHhhcCCHHHHHHHHHHHH
Q psy230 198 IMSCELLSYEEILNLCESIH 217 (222)
Q Consensus 198 i~~~e~~~~~~~~~~~~~~~ 217 (222)
|...+.+|++|..+.+++++
T Consensus 17 vLh~~nLtEeQrn~yI~slk 36 (38)
T 1zda_A 17 ALHDPNLNEEQRNAKIKSIR 36 (38)
T ss_dssp HHSCSSSCTTHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHhHHHHhh
Confidence 44567788999999999886
No 127
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=23.64 E-value=2e+02 Score=20.46 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=16.8
Q ss_pred CCCCCCEEEEE---EEecCCCCeeEEEE
Q psy230 99 KVETGDVVAGK---LLTANKDMESEMVC 123 (222)
Q Consensus 99 ~l~~GDlV~Ar---V~~~~~~~~~~Ls~ 123 (222)
.|.+||+|+.+ |..+. +.++|++
T Consensus 62 ~~~~G~vv~i~~g~v~~~~--g~~qL~i 87 (119)
T 1o7i_A 62 SIKEGQVVKIENAWTTAFK--GQVQLNA 87 (119)
T ss_dssp CCCTTCEEEEEEEEEEEET--TEEEEEE
T ss_pred cCCCCCEEEEEeEEEEEeC--CEEEEEE
Confidence 48999998755 66654 4578887
No 128
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=23.26 E-value=26 Score=25.39 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.0
Q ss_pred cCCCCCCEEEEEEEec
Q psy230 98 PKVETGDVVAGKLLTA 113 (222)
Q Consensus 98 ~~l~~GDlV~ArV~~~ 113 (222)
..|++||+|.|+|...
T Consensus 4 ~~~~~GdlVwaK~~gy 19 (108)
T 2l89_A 4 DRLNFGDRILVKAPGY 19 (108)
T ss_dssp CCCCTTEEEEEECSSS
T ss_pred CcccCCCEEEEEeCCc
Confidence 3589999999998644
No 129
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=23.11 E-value=65 Score=22.07 Aligned_cols=31 Identities=10% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHHHHHHhh-cCCHHHHHHHHHHHHHHhcC
Q psy230 192 VRVGNLIMSCE-LLSYEEILNLCESIHIRFLQ 222 (222)
Q Consensus 192 ~~i~~~i~~~e-~~~~~~~~~~~~~~~~~l~~ 222 (222)
..++|++.++- ..+++|...+.++|.+.|++
T Consensus 35 MvLGN~vTnlln~V~~~qR~~iAe~Fa~AL~~ 66 (76)
T 2jr2_A 35 MCLGNAVTNIIAQVPESKRVAVVDNFTKALKQ 66 (76)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44556655544 46799999999999999874
No 130
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=22.51 E-value=1.6e+02 Score=18.87 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=25.8
Q ss_pred eEEEEecCcEEEEEccccccCCCCCCEEEEEEEEEecceEEEEE
Q psy230 33 GILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76 (222)
Q Consensus 33 G~l~~~~~~~v~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI 76 (222)
|+.+.+ ...+.|.. --+||.|-.+|+.+..+++.-++
T Consensus 30 Gva~~~-g~~vfV~~------alPGE~V~v~i~k~kk~~~~a~~ 66 (68)
T 1yez_A 30 GIARIE-GFVIFVPG------TKVGDEVRIKVERVLPKFAFASV 66 (68)
T ss_dssp EEEEET-TEEEEEES------CCTTCEEEEEEEEECSSCEEEEE
T ss_pred EEEEEC-CEEEECcC------CCCCCEEEEEEEEecCCEEEEEE
Confidence 444444 35555654 25699999999999988887554
No 131
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=22.35 E-value=80 Score=20.39 Aligned_cols=23 Identities=26% Similarity=0.106 Sum_probs=18.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHH
Q psy230 196 NLIMSCELLSYEEILNLCESIHI 218 (222)
Q Consensus 196 ~~i~~~e~~~~~~~~~~~~~~~~ 218 (222)
--|.+...++++|..+++.+++.
T Consensus 11 Yeil~lpnLtEeqRn~yI~slkd 33 (57)
T 3qwo_C 11 NEIANLPNLNEEQRSAFLSSIND 33 (57)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcchhhccchHhhhcc
Confidence 34667778899999999999875
No 132
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=22.35 E-value=52 Score=24.82 Aligned_cols=17 Identities=41% Similarity=0.827 Sum_probs=13.0
Q ss_pred cEEEEEEeCCeEEEeeCCch
Q psy230 170 KMELSIGMNGKIWIRCESFS 189 (222)
Q Consensus 170 ~~ei~vG~NG~iWi~~~~~~ 189 (222)
.++|. ||+|||.....+
T Consensus 75 HldIk---dgKIWIq~D~TE 91 (126)
T 2nvm_A 75 YLQIQ---NGKIWIEEDSTN 91 (126)
T ss_dssp EEEEE---TTEEEEEECSST
T ss_pred EEEEe---CCeEEEEeCCch
Confidence 45554 999999987764
No 133
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=22.21 E-value=2.1e+02 Score=20.18 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=18.2
Q ss_pred CCcCCCCCCEEEEE---EEecCCCCeeEEEE
Q psy230 96 NPPKVETGDVVAGK---LLTANKDMESEMVC 123 (222)
Q Consensus 96 ~r~~l~~GDlV~Ar---V~~~~~~~~~~Ls~ 123 (222)
.-+.|.+||.|..+ |.... +.++|.+
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~--G~~~L~v 85 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYN--DRFQVQV 85 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEET--TEEEEEE
T ss_pred cccccCCCCEEEEEEEEEEEEC--CEEEEEE
Confidence 44689999999866 44443 4677776
No 134
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.16 E-value=1.8e+02 Score=22.46 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=22.7
Q ss_pred eEEEEecCcEEEEEccccccCCC----CCCEEEEEEEEEe
Q psy230 33 GILRHAKPFTYYVDYIQRRYVPT----RGDLVIGVVTSRV 68 (222)
Q Consensus 33 G~l~~~~~~~v~V~~~~~~Y~P~----vGDiVIG~V~~v~ 68 (222)
..+... +..+++.|....|-|- ..-.|+|+|+.+-
T Consensus 155 Kr~~~~-~~~~~L~~~N~~y~~i~i~~~~~~i~G~Vv~~~ 193 (196)
T 3k2z_A 155 AKFYQR-GDTVELRPANREMSSMFFRAEKVKILGKVVGVF 193 (196)
T ss_dssp EEEEEE-TTEEEEECSCTTSCCEEEEGGGCEEEEEEEEEE
T ss_pred EEEEEE-CCEEEEEECCCCCCCEEecCCCEEEEEEEEEEE
Confidence 344444 4567888877677553 2447889998764
No 135
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=21.21 E-value=1.1e+02 Score=25.04 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=22.4
Q ss_pred CCCCCCEEEEEEEEEecc-eEEEEECCCCCee
Q psy230 53 VPTRGDLVIGVVTSRVGD-NYRVDIGSHDPAV 83 (222)
Q Consensus 53 ~P~vGDiVIG~V~~v~~~-~~~VdI~~~~~a~ 83 (222)
.-++||+|.++|.++..+ .+.+.+..+..+.
T Consensus 114 ~l~~GD~V~a~Vi~v~~~~~i~LS~k~~~lG~ 145 (235)
T 2z0s_A 114 LLKVGDYIKAKVVAFDKTRSPLLTVQGEGLGR 145 (235)
T ss_dssp SSCTTCEEEEEEEEECTTSCEEEECCSSSCEE
T ss_pred cCCCCCEEEEEEEEECCCCcEEEEEecccCcc
Confidence 458999999999999865 4555555554443
No 136
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=21.10 E-value=42 Score=27.48 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=51.1
Q ss_pred EEEEEecCCCCeeEEEEecCCCccccCcccCCceEEEechhhhhhccCCChhHHHHhhhcCCCcEEEEEEeCCeEEEeeC
Q psy230 107 AGKLLTANKDMESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCE 186 (222)
Q Consensus 107 ~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~l~~v~~~~~~rl~~~~~~~l~~l~~~~~~~~ei~vG~NG~iWi~~~ 186 (222)
.|+|..-.++.++.++.-- ++-|+. -++....+. .+||.++.+ +..|++-|-.+|-+||+.+
T Consensus 12 ~a~v~R~T~ET~I~v~l~L-----DG~G~~----~i~TGigFl-------DHML~~~a~--Hg~~dL~v~a~GDl~iD~H 73 (207)
T 2f1d_A 12 IGEVKRVTKETNVSVKINL-----DGTGVA----DSSSGIPFL-------DHMLDQLAS--HGLFDVHVRATGDVHIDDH 73 (207)
T ss_dssp EEEEEEECSSCEEEEEEET-----TCCCCE----EEECSCHHH-------HHHHHHHHH--HHTCEEEEEEECCTTTCSH
T ss_pred eEEEEEcCCcEEEEEEEEe-----CCCCce----eeeCCChHH-------HHHHHHHHH--HcCCceEEEEecCccccCC
Confidence 5778877777777777632 222321 111112221 489999999 9999999999999999863
Q ss_pred --CchhHHHHHHHHHHh
Q psy230 187 --SFSDTVRVGNLIMSC 201 (222)
Q Consensus 187 --~~~~~~~i~~~i~~~ 201 (222)
-+...+.+.+|+++.
T Consensus 74 HtvEDvgI~LG~Al~~A 90 (207)
T 2f1d_A 74 HTNEDIALAIGTALLKA 90 (207)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhHHHHHHHH
Confidence 133356677777764
No 137
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.06 E-value=1e+02 Score=21.63 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=20.5
Q ss_pred cCCcCCCCCCEEEEEEEecCCCCeeEEEE
Q psy230 95 KNPPKVETGDVVAGKLLTANKDMESEMVC 123 (222)
Q Consensus 95 ~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~ 123 (222)
.....+++||++.++|.++.+.+ ..+.+
T Consensus 5 ~~~~~~~vG~i~~G~V~~v~~fG-~FV~l 32 (103)
T 2eqs_A 5 SSGEEPTIGDIYNGKVTSIMQFG-CFVQL 32 (103)
T ss_dssp CCCSSCCTTCEEEEEEEEECSSC-EEEEE
T ss_pred cccccCCCCCEEEEEEEEEeccE-EEEEE
Confidence 44456889999999999997654 34444
No 138
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=20.91 E-value=28 Score=24.66 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=16.2
Q ss_pred cEEEEEEeCCeEEEeeCCchh
Q psy230 170 KMELSIGMNGKIWIRCESFSD 190 (222)
Q Consensus 170 ~~ei~vG~NG~iWi~~~~~~~ 190 (222)
..--+||.+|.+|+++-+...
T Consensus 34 ~~~giVG~~G~vyl~gl~~~g 54 (94)
T 3l48_A 34 RELGMVADEGLAWLSGVTPGE 54 (94)
T ss_dssp CEEEEBCGGGEEEESSCCTTC
T ss_pred ceEEEECCCCEEEEECCCCCC
Confidence 344589999999999876553
No 139
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=20.79 E-value=1.8e+02 Score=18.83 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=18.5
Q ss_pred CCCCEEEEEEEEEecceEEEEE
Q psy230 55 TRGDLVIGVVTSRVGDNYRVDI 76 (222)
Q Consensus 55 ~vGDiVIG~V~~v~~~~~~VdI 76 (222)
-+||.|-.+|+++..+++.-++
T Consensus 47 lPGE~V~v~i~k~kk~~~~a~~ 68 (70)
T 1yvc_A 47 EKGSVINVKVTAVKEKFAFAER 68 (70)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEeeCCeEEEEE
Confidence 5699999999999988886553
No 140
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=20.75 E-value=1.3e+02 Score=23.03 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=24.7
Q ss_pred cCCCCCCEEE-----EEEEEEecceEEEEECCCC
Q psy230 52 YVPTRGDLVI-----GVVTSRVGDNYRVDIGSHD 80 (222)
Q Consensus 52 Y~P~vGDiVI-----G~V~~v~~~~~~VdI~~~~ 80 (222)
-.|++|+.+. |+|+++..+...||-|-|.
T Consensus 101 ~~~~~G~~~~~~~~~~~V~~v~~~~V~vD~NHPL 134 (157)
T 3pr9_A 101 IKPIKGLTITIDGIPGKIVSINSGRVLVDFNHEL 134 (157)
T ss_dssp CCCCTTCEEEETTEEEEEEEEETTEEEEECSCTT
T ss_pred CCcCCCcEEEecCCCeEEEEEcCCEEEEECCCcc
Confidence 3478898875 8999999999999999764
No 141
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=20.50 E-value=1.3e+02 Score=22.17 Aligned_cols=21 Identities=19% Similarity=0.602 Sum_probs=15.4
Q ss_pred CCcEEEEEEeCCeEEEeeCCc
Q psy230 168 RQKMELSIGMNGKIWIRCESF 188 (222)
Q Consensus 168 ~~~~ei~vG~NG~iWi~~~~~ 188 (222)
++.-=.|+|++|-+|-.+++.
T Consensus 18 ~~~~aAIig~dGsvWA~s~gf 38 (130)
T 3nul_A 18 HLTAAAILGQDGSVWAQSAKF 38 (130)
T ss_dssp CCSEEEEEETTSCEEEECTTC
T ss_pred cEeeEEEEeCCCCEEEcCCCc
Confidence 344456789999999887653
No 142
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=20.18 E-value=30 Score=23.82 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=14.5
Q ss_pred EEEEEeCCeEEEeeCCch
Q psy230 172 ELSIGMNGKIWIRCESFS 189 (222)
Q Consensus 172 ei~vG~NG~iWi~~~~~~ 189 (222)
--+||.+|.+|+++-++.
T Consensus 31 ~giVg~~G~vyl~g~~~~ 48 (89)
T 2xet_A 31 SGIVGDNSGVYLTGLPKK 48 (89)
T ss_dssp CEECCTTSEEEEEEECSE
T ss_pred EEEEcCCCEEEEECCCCC
Confidence 358999999999886654
Done!