Your job contains 1 sequence.
>psy230
MAGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLV
IGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESE
MVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK
IWIRCESFSDTVRVGNLIMSCELLSYEEILNLCESIHIRFLQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy230
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NWK4 - symbol:EXOSC3 "Uncharacterized protein... 494 3.3e-47 1
FB|FBgn0260648 - symbol:Rrp40 species:7227 "Drosophila me... 484 3.8e-46 1
RGD|1304739 - symbol:Exosc3 "exosome component 3" species... 481 7.9e-46 1
MGI|MGI:1913612 - symbol:Exosc3 "exosome component 3" spe... 480 1.0e-45 1
UNIPROTKB|Q3T0E1 - symbol:EXOSC3 "Exosome complex compone... 478 1.6e-45 1
UNIPROTKB|Q9NQT5 - symbol:EXOSC3 "Exosome complex compone... 477 2.1e-45 1
UNIPROTKB|E2RHV4 - symbol:EXOSC3 "Uncharacterized protein... 475 3.4e-45 1
ZFIN|ZDB-GENE-050706-140 - symbol:exosc3 "exosome compone... 472 7.1e-45 1
UNIPROTKB|F1ST67 - symbol:EXOSC3 "Uncharacterized protein... 470 1.2e-44 1
WB|WBGene00010325 - symbol:exos-3 species:6239 "Caenorhab... 361 4.1e-33 1
SGD|S000005502 - symbol:RRP40 "Exosome non-catalytic core... 356 1.4e-32 1
DICTYBASE|DDB_G0276783 - symbol:DDB_G0276783 "RRP40 famil... 355 1.8e-32 1
POMBASE|SPAC22A12.12c - symbol:SPAC22A12.12c "exosome sub... 353 2.9e-32 1
TAIR|locus:505006271 - symbol:AT2G25355 species:3702 "Ara... 348 9.8e-32 1
TAIR|locus:504955555 - symbol:AT4G32175 "AT4G32175" speci... 333 3.8e-30 1
CGD|CAL0004045 - symbol:orf19.3304 species:5476 "Candida ... 303 5.7e-27 1
UNIPROTKB|G5EH77 - symbol:MGCH7_ch7g600 "Exosome complex ... 175 5.8e-20 2
ASPGD|ASPL0000071151 - symbol:AN4617 species:162425 "Emer... 156 1.8e-14 2
UNIPROTKB|Q95Z14 - symbol:RRP40 "Rrp40p homologue" specie... 114 3.6e-08 2
>UNIPROTKB|F1NWK4 [details] [associations]
symbol:EXOSC3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=IEA] [GO:0045006 "DNA deamination" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0071034 "CUT
catabolic process" evidence=IEA] InterPro:IPR026699 GO:GO:0005730
GO:GO:0003723 GO:GO:0035327 GO:GO:0006364 GO:GO:0000176
GO:GO:0000177 GO:GO:0043928 PANTHER:PTHR21321
GeneTree:ENSGT00390000012042 OMA:HKEPGSG GO:GO:0071034
GO:GO:0045006 EMBL:AADN02035315 IPI:IPI00595318
Ensembl:ENSGALT00000003816 Uniprot:F1NWK4
Length = 272
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 99/215 (46%), Positives = 146/215 (67%)
Query: 6 LSLNAEPR--LILGPGLRRESSAILVSQSGILRH---------AKPFTYYVDYIQRRYVP 54
L +A PR L+ GPGLRR + +LV++ G+LRH A Y+VD Q+RYVP
Sbjct: 49 LGTSAAPRGRLLCGPGLRRCAGGLLVTKCGLLRHRRAGDGAAAAAGGAYWVDSQQKRYVP 108
Query: 55 TRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
+GD VIG+VT +VGD +R+D+G + A LSYLAFEGATK+N P V+ GD++ G+ L AN
Sbjct: 109 VKGDHVIGIVTGKVGDVFRLDVGGSEQASLSYLAFEGATKRNRPNVQVGDLIYGQFLVAN 168
Query: 115 KDMESEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMEL 173
KDME EMVC+DS G+ MG++ DG+L S+ L RKLL PKC ++++L++ EL
Sbjct: 169 KDMEPEMVCIDSSGRASGMGVIGQDGFLFKVSLGLIRKLLAPKCEIIQELSQL--YPFEL 226
Query: 174 SIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
+GMNG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 227 VLGMNGRIWVKAKTVQQTLIIVNILEACEYMTAEQ 261
>FB|FBgn0260648 [details] [associations]
symbol:Rrp40 species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0000178 "exosome
(RNase complex)" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010468 "regulation of
gene expression" evidence=IMP] InterPro:IPR026699 GO:GO:0005737
EMBL:AE014134 GO:GO:0003723 GO:GO:0016787 GO:GO:0010468
GO:GO:0000176 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
eggNOG:COG1097 GeneTree:ENSGT00390000012042 KO:K03681 OMA:HKEPGSG
EMBL:BT023807 RefSeq:NP_722725.1 UniGene:Dm.29211 SMR:Q8IPX7
IntAct:Q8IPX7 STRING:Q8IPX7 EnsemblMetazoa:FBtr0077883
GeneID:319033 KEGG:dme:Dmel_CG31938 UCSC:CG31938-RA CTD:319033
FlyBase:FBgn0260648 InParanoid:Q8IPX7 OrthoDB:EOG4WDBTR
GenomeRNAi:319033 NextBio:847046 Uniprot:Q8IPX7
Length = 232
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 94/210 (44%), Positives = 140/210 (66%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNY 72
R+ILGPGLRR ++ S++G LRH +P T++VD QRRY+P RGDL++G+V ++ GD Y
Sbjct: 25 RVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIPARGDLILGIVRAKAGDLY 84
Query: 73 RVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFI 132
RVDIG+ D A +SYLAFE A+KKN P + GD++ ++L A+ D+E E+VCV+S GK
Sbjct: 85 RVDIGATDTASISYLAFEAASKKNRPDLIPGDLIYARVLNASADIEPELVCVNSVGKSGK 144
Query: 133 MGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
+G+L DG+ S++L R LL CP+L L + E+++G+NG+IW++ S +TV
Sbjct: 145 LGVLTDGFFFKCSLNLGRMLLRENCPVLAALTREL--PYEIAVGVNGRIWLKAHSLKETV 202
Query: 193 RVGNLIMSCELLSYEEILNLCESIHIRFLQ 222
+ N I + E EI +C ++ FLQ
Sbjct: 203 ALANAISALEQSGCAEIDKICGNLG-DFLQ 231
>RGD|1304739 [details] [associations]
symbol:Exosc3 "exosome component 3" species:10116 "Rattus
norvegicus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0035327 "transcriptionally
active chromatin" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045006 "DNA
deamination" evidence=ISO] [GO:0045190 "isotype switching"
evidence=ISO] [GO:0045830 "positive regulation of isotype
switching" evidence=ISO] [GO:0071034 "CUT catabolic process"
evidence=ISO] [GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR026699 GO:GO:0005730 GO:GO:0003723 GO:GO:0045190
GO:GO:0035327 GO:GO:0006364 GO:GO:0000176 GO:GO:0000177
GO:GO:0043928 PANTHER:PTHR21321 GeneTree:ENSGT00390000012042
OrthoDB:EOG4BCDNP GO:GO:0071034 GO:GO:0045006 IPI:IPI00357897
Ensembl:ENSRNOT00000016582 Uniprot:D3ZT51
Length = 273
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 95/211 (45%), Positives = 142/211 (67%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKPF-----TYYVDYIQRRYVPTRGD 58
L+ A PRL + GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD
Sbjct: 54 LNAGARPRLRIVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGD 113
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+V ++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME
Sbjct: 114 HVIGIVVAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDME 173
Query: 119 SEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM 177
EMVC+DS G+ MG++ DG L ++ L RKLL P C ++++L K +E+ GM
Sbjct: 174 PEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIVQELGKL--YPLEIVFGM 231
Query: 178 NGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
NG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 232 NGRIWVKAKTIQQTLILANVLEACEHMTTEQ 262
>MGI|MGI:1913612 [details] [associations]
symbol:Exosc3 "exosome component 3" species:10090 "Mus
musculus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0035327 "transcriptionally active chromatin"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0045006 "DNA deamination" evidence=ISO]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0045830 "positive
regulation of isotype switching" evidence=IMP] [GO:0071034 "CUT
catabolic process" evidence=ISO] InterPro:IPR026699 MGI:MGI:1913612
GO:GO:0005730 GO:GO:0003723 GO:GO:0004527 GO:GO:0090305
GO:GO:0000178 GO:GO:0045190 GO:GO:0035327 GO:GO:0006364
GO:GO:0000176 GO:GO:0000177 GO:GO:0043928 PANTHER:PTHR21321
eggNOG:COG1097 CTD:51010 GeneTree:ENSGT00390000012042
HOGENOM:HOG000184644 HOVERGEN:HBG051518 KO:K03681 OMA:HKEPGSG
OrthoDB:EOG4BCDNP GO:GO:0071034 GO:GO:0045006 ChiTaRS:EXOSC3
EMBL:BC023669 EMBL:BC054085 EMBL:AK006281 EMBL:AK009165
IPI:IPI00396812 RefSeq:NP_079789.1 UniGene:Mm.275788
UniGene:Mm.466922 ProteinModelPortal:Q7TQK4 SMR:Q7TQK4
IntAct:Q7TQK4 STRING:Q7TQK4 PhosphoSite:Q7TQK4 PaxDb:Q7TQK4
PRIDE:Q7TQK4 Ensembl:ENSMUST00000030003 GeneID:66362 KEGG:mmu:66362
InParanoid:Q7TQK4 NextBio:321447 Bgee:Q7TQK4 CleanEx:MM_EXOSC3
Genevestigator:Q7TQK4 GermOnline:ENSMUSG00000028322 Uniprot:Q7TQK4
Length = 274
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 95/211 (45%), Positives = 142/211 (67%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKPF-----TYYVDYIQRRYVPTRGD 58
L+ A PRL + GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD
Sbjct: 55 LNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGD 114
Query: 59 LVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDME 118
VIG+V ++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME
Sbjct: 115 HVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDME 174
Query: 119 SEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGM 177
EMVC+DS G+ MG++ DG L ++ L RKLL P C ++++L K +E+ GM
Sbjct: 175 PEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIVQELGKL--YPLEIVFGM 232
Query: 178 NGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
NG+IW++ ++ T+ + N++ +CE ++ E+
Sbjct: 233 NGRIWVKAKTIQQTLILANVLEACEHMTTEQ 263
>UNIPROTKB|Q3T0E1 [details] [associations]
symbol:EXOSC3 "Exosome complex component RRP40"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0000178 "exosome (RNase complex)" evidence=ISS] [GO:0071034
"CUT catabolic process" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045006 "DNA deamination"
evidence=IEA] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=IEA] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0045190
GO:GO:0035327 GO:GO:0006364 GO:GO:0000176 GO:GO:0000177
GO:GO:0043928 PANTHER:PTHR21321 eggNOG:COG1097 EMBL:BC102436
IPI:IPI00697728 RefSeq:NP_001030474.1 UniGene:Bt.48870
ProteinModelPortal:Q3T0E1 SMR:Q3T0E1 STRING:Q3T0E1
Ensembl:ENSBTAT00000025185 GeneID:533245 KEGG:bta:533245 CTD:51010
GeneTree:ENSGT00390000012042 HOGENOM:HOG000184644
HOVERGEN:HBG051518 InParanoid:Q3T0E1 KO:K03681 OMA:HKEPGSG
OrthoDB:EOG4BCDNP NextBio:20875973 GO:GO:0071034 GO:GO:0045006
Uniprot:Q3T0E1
Length = 275
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 97/219 (44%), Positives = 147/219 (67%)
Query: 2 AGDT-LSLNAEPR----LILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQR 50
AG+ L LNA R ++ GPGLRR +LV++ G LRH +P + Y+VD Q+
Sbjct: 48 AGERPLRLNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQK 107
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKL 110
RYVP +GD VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+
Sbjct: 108 RYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQF 167
Query: 111 LTANKDMESEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQ 169
+ ANKDME EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K
Sbjct: 168 VVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGKL--Y 225
Query: 170 KMELSIGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
+E+ GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 226 PLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTADQ 264
>UNIPROTKB|Q9NQT5 [details] [associations]
symbol:EXOSC3 "Exosome complex component RRP40"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IDA] [GO:0000178 "exosome
(RNase complex)" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0071034 "CUT catabolic process" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay"
evidence=IMP;TAS] [GO:0045190 "isotype switching" evidence=ISS]
[GO:0045006 "DNA deamination" evidence=IDA] [GO:0035327
"transcriptionally active chromatin" evidence=IMP] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR026699
GO:GO:0005829 GO:GO:0005730 GO:GO:0003723 EMBL:CH471071
GO:GO:0045190 GO:GO:0035327 GO:GO:0006364 GO:GO:0000176
GO:GO:0000175 GO:GO:0000177 EMBL:AL138752 GO:GO:0043928 PDB:2NN6
PDBsum:2NN6 PANTHER:PTHR21321 eggNOG:COG1097 CTD:51010
HOGENOM:HOG000184644 HOVERGEN:HBG051518 KO:K03681 OMA:HKEPGSG
GO:GO:0071034 GO:GO:0045006 EMBL:AF281132 EMBL:AK289571
EMBL:AK290864 EMBL:BC002437 EMBL:BC008880 EMBL:AF151860
IPI:IPI00015956 IPI:IPI00434985 RefSeq:NP_001002269.1
RefSeq:NP_057126.2 UniGene:Hs.602571 UniGene:Hs.713483
ProteinModelPortal:Q9NQT5 SMR:Q9NQT5 DIP:DIP-29847N IntAct:Q9NQT5
STRING:Q9NQT5 PhosphoSite:Q9NQT5 DMDM:14285758 PaxDb:Q9NQT5
PeptideAtlas:Q9NQT5 PRIDE:Q9NQT5 DNASU:51010
Ensembl:ENST00000327304 Ensembl:ENST00000396521
Ensembl:ENST00000465229 GeneID:51010 KEGG:hsa:51010 UCSC:uc004aal.2
GeneCards:GC09M037772 HGNC:HGNC:17944 HPA:HPA020485 MIM:606489
MIM:614678 neXtProt:NX_Q9NQT5 Orphanet:2254 PharmGKB:PA134926550
InParanoid:Q9NQT5 PhylomeDB:Q9NQT5 ChiTaRS:EXOSC3
EvolutionaryTrace:Q9NQT5 GenomeRNAi:51010 NextBio:53494
ArrayExpress:Q9NQT5 Bgee:Q9NQT5 CleanEx:HS_EXOSC3
Genevestigator:Q9NQT5 GermOnline:ENSG00000107371 Uniprot:Q9NQT5
Length = 275
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/214 (43%), Positives = 145/214 (67%)
Query: 6 LSLNAEP----RLILGPGLRRESSAILVSQSGILRHAKPFT------YYVDYIQRRYVPT 55
LSLNA R++ GPGLRR +LV++ G LRH +P + Y+VD Q+RYVP
Sbjct: 53 LSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPV 112
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANK 115
+GD VIG+VT++ GD ++VD+G +PA LSYL+FEGATK+N P V+ GD++ G+ + ANK
Sbjct: 113 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 172
Query: 116 DMESEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELS 174
DME EMVC+DS G+ MG++ DG L ++ L RKLL P C +++++ K +E+
Sbjct: 173 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKL--YPLEIV 230
Query: 175 IGMNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
GMNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 231 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>UNIPROTKB|E2RHV4 [details] [associations]
symbol:EXOSC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR026699 GO:GO:0005730 GO:GO:0003723 GO:GO:0045190
GO:GO:0035327 GO:GO:0006364 GO:GO:0000176 GO:GO:0000177
GO:GO:0043928 PANTHER:PTHR21321 CTD:51010
GeneTree:ENSGT00390000012042 KO:K03681 OMA:HKEPGSG GO:GO:0071034
GO:GO:0045006 EMBL:AAEX03007971 RefSeq:XP_538738.1
ProteinModelPortal:E2RHV4 Ensembl:ENSCAFT00000003746 GeneID:481616
KEGG:cfa:481616 NextBio:20856372 Uniprot:E2RHV4
Length = 275
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 91/203 (44%), Positives = 139/203 (68%)
Query: 13 RLILGPGLRRESSAILVSQSGILRHAKPF------TYYVDYIQRRYVPTRGDLVIGVVTS 66
R++ GPGLRR +LV++ G LRH +P Y+VD Q+RYVP +GD VIG+VT+
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKEPGGGSGGGVYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 67 RVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDS 126
+ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDME EMVC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQIGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 127 RGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRC 185
G+ MG++ DG L ++ L RKLL P C +L+++ K +E+ GMNG+IW++
Sbjct: 184 CGRASGMGVIGQDGLLFKVTLGLIRKLLAPDCEILQEVGKL--YPLEIVFGMNGRIWVKA 241
Query: 186 ESFSDTVRVGNLIMSCELLSYEE 208
++ T+ + N++ +CE ++ ++
Sbjct: 242 KTIQQTLILANILEACEHMTADQ 264
>ZFIN|ZDB-GENE-050706-140 [details] [associations]
symbol:exosc3 "exosome component 3" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] InterPro:IPR026699 ZFIN:ZDB-GENE-050706-140
GO:GO:0007420 GO:GO:0003723 GO:GO:0009790 GO:GO:0000178
PANTHER:PTHR21321 eggNOG:COG1097 CTD:51010 HOGENOM:HOG000184644
HOVERGEN:HBG051518 KO:K03681 OrthoDB:EOG4BCDNP EMBL:BC098620
IPI:IPI00498722 RefSeq:NP_001025132.1 UniGene:Dr.150986
ProteinModelPortal:Q4KMD2 SMR:Q4KMD2 STRING:Q4KMD2 GeneID:565000
KEGG:dre:565000 InParanoid:Q4KMD2 NextBio:20885665 Uniprot:Q4KMD2
Length = 247
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 95/205 (46%), Positives = 138/205 (67%)
Query: 2 AGDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVI 61
AGD + A+ RLI GPGLRR + I V ++G+L+H +P Y+V+ QRRYVP +G+ VI
Sbjct: 31 AGDA-NPKAD-RLICGPGLRRSGAEIRVCRAGVLKHKQPNMYWVNCQQRRYVPAKGESVI 88
Query: 62 GVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEM 121
G+VT++ GD ++VD+G + A LSYLAFEGATK+N P V+ GD+V G+ ANKDME E+
Sbjct: 89 GIVTAKSGDVFKVDVGGSEQASLSYLAFEGATKRNRPNVQVGDLVFGQFTIANKDMEPEL 148
Query: 122 VCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGK 180
VC+DS G+ MG+ DG L S+ L R+LL P+ L+ L K E+ +GMNG+
Sbjct: 149 VCIDSCGRANGMGVFGGDGLLFKVSLGLVRRLLAPQSDLVSDLEKMF--PCEMVVGMNGR 206
Query: 181 IWIRCESFSDTVRVGNLIMSCELLS 205
+W++ + T+ + NL+ +CE +S
Sbjct: 207 VWVKARTVQHTLILSNLLEACENMS 231
>UNIPROTKB|F1ST67 [details] [associations]
symbol:EXOSC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR026699 GO:GO:0005730 GO:GO:0003723 GO:GO:0045190
GO:GO:0035327 GO:GO:0006364 GO:GO:0000176 GO:GO:0000177
GO:GO:0043928 PANTHER:PTHR21321 CTD:51010
GeneTree:ENSGT00390000012042 KO:K03681 OMA:HKEPGSG GO:GO:0071034
GO:GO:0045006 EMBL:CU062410 RefSeq:XP_001929041.1 UniGene:Ssc.24317
Ensembl:ENSSSCT00000005895 GeneID:100152421 KEGG:ssc:100152421
Uniprot:F1ST67
Length = 275
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 93/212 (43%), Positives = 142/212 (66%)
Query: 6 LSLNAEPRL--ILGPGLRRESSAILVSQSGILRHAKPF------TYYVDYIQRRYVPTRG 57
L+ A PR+ + GPGLRR +LV++ G LRH + Y+VD Q+RYVP +G
Sbjct: 55 LNAGARPRVRVVCGPGLRRCGDRLLVTKCGRLRHKEAGGGGGSGVYWVDSQQKRYVPVKG 114
Query: 58 DLVIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDM 117
D VIG+VT++ GD ++VD+G +PA LSYLAFEGATK+N P V+ GD++ G+ + ANKDM
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQIGDLIYGQFVVANKDM 174
Query: 118 ESEMVCVDSRGKEFIMGILN-DGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIG 176
E EMVC+DS G+ MG++ DG L ++ L RKLL P C +L+++ K +E+ G
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLVRKLLAPNCEILQEVGKL--YPLEIVFG 232
Query: 177 MNGKIWIRCESFSDTVRVGNLIMSCELLSYEE 208
MNG+IW++ ++ T+ + N++ +CE ++ ++
Sbjct: 233 MNGRIWVKAKTIQQTLILANVLEACEHMTADQ 264
>WB|WBGene00010325 [details] [associations]
symbol:exos-3 species:6239 "Caenorhabditis elegans"
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR026699 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
GO:GO:0003723 GO:GO:0000178 EMBL:Z79600 InterPro:IPR022967
SMART:SM00316 PANTHER:PTHR21321 eggNOG:COG1097
GeneTree:ENSGT00390000012042 HOGENOM:HOG000184644 KO:K03681
PIR:T22989 RefSeq:NP_492751.1 ProteinModelPortal:Q93830 SMR:Q93830
STRING:Q93830 PaxDb:Q93830 EnsemblMetazoa:F59C6.4.1
EnsemblMetazoa:F59C6.4.2 GeneID:186604 KEGG:cel:CELE_F59C6.4
UCSC:F59C6.4.1 CTD:186604 WormBase:F59C6.4 InParanoid:Q93830
OMA:EYAMINF NextBio:932398 Uniprot:Q93830
Length = 226
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 71/221 (32%), Positives = 130/221 (58%)
Query: 1 MAGDTLSL-NAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDL 59
+ GD ++ ++ I+G G+ + +Q G H +++ +RY+P GD
Sbjct: 5 LPGDVINEPSSSDSSIIGYGISVRGQTRIATQPGAF-HNDDGKVWLNVHSKRYIPQEGDR 63
Query: 60 VIGVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
VI +VTS+ GD +R+DIG+ + A++++ FEGATK+N P ++TGD++ + E+
Sbjct: 64 VIAIVTSKTGDFFRLDIGTAEYAMINFTNFEGATKRNRPNLKTGDIIYATVFDTTPRTEA 123
Query: 120 EMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNG 179
E+ CVD + MG LN G++ S++ CR+L+NP C +L+ + K K E+++GMNG
Sbjct: 124 ELTCVDDEKRARGMGQLNGGFMFKVSLNHCRRLINPSCKILQTVGKFF--KFEITVGMNG 181
Query: 180 KIWIRCESFSDTVRVGNLIMSCELLSYE-EILNLCESIHIR 219
+IWI + D +++ ++I E ++ E E++ L ++ + R
Sbjct: 182 RIWISASTSDDIIKIHDIINKSEFITDEDELITLVQNNYTR 222
>SGD|S000005502 [details] [associations]
symbol:RRP40 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0070481 "nuclear-transcribed mRNA catabolic process, non-stop
decay" evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent
rRNA catabolic process" evidence=IMP] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IC] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0043628 "ncRNA 3'-end processing" evidence=IC]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034427 "nuclear-transcribed mRNA catabolic
process, exonucleolytic, 3'-5'" evidence=IC] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IC] InterPro:IPR026699
PROSITE:PS50126 SGD:S000005502 GO:GO:0005730 EMBL:BK006948
GO:GO:0003723 GO:GO:0030145 GO:GO:0071035 GO:GO:0071038
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 PANTHER:PTHR21321 eggNOG:COG1097
GeneTree:ENSGT00390000012042 HOGENOM:HOG000184644 KO:K03681
OrthoDB:EOG45QMPG EMBL:Z74884 EMBL:AY692926 PIR:S61872
RefSeq:NP_014499.2 PDB:2JA9 PDBsum:2JA9 ProteinModelPortal:Q08285
SMR:Q08285 DIP:DIP-5330N IntAct:Q08285 MINT:MINT-530842
STRING:Q08285 PaxDb:Q08285 PeptideAtlas:Q08285 EnsemblFungi:YOL142W
GeneID:854023 KEGG:sce:YOL142W CYGD:YOL142w OMA:SYMAFPN
EvolutionaryTrace:Q08285 NextBio:975559 Genevestigator:Q08285
GermOnline:YOL142W Uniprot:Q08285
Length = 240
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 80/209 (38%), Positives = 126/209 (60%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSA--ILVSQSGILR-HAKPF----TYYVDYIQRRYVPT 55
GD+ ++ + LGPG+ + + I +G+L AK T Y+DY +RY+P+
Sbjct: 8 GDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPS 67
Query: 56 RGDLVIGVVTSRVGDNYRVDIGSHDPAV-LSYLAFEGATKKNPPKVETGDVVAGKLLTAN 114
D VIGV+ D+Y+V + + +V LSY+AF A+KKN P ++ GD+V ++ TA
Sbjct: 68 VNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAE 127
Query: 115 KDMESEMVCVDSR-GKEFIMGILNDGYLLHTSISLCRKLL-NPKCPLLKQLAKRSRQKME 172
K++E+E+ C DS G++ GIL DG ++ +++ R+LL N PLLK LA + K E
Sbjct: 128 KELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHT--KFE 185
Query: 173 LSIGMNGKIWIRCESFSDTVRVGNLIMSC 201
++IG+NGKIW++CE S+T+ IM C
Sbjct: 186 VAIGLNGKIWVKCEELSNTLACYRTIMEC 214
>DICTYBASE|DDB_G0276783 [details] [associations]
symbol:DDB_G0276783 "RRP40 family protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR026699 PROSITE:PS50126
dictyBase:DDB_G0276783 GO:GO:0005737 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0003723 GO:GO:0000178
EMBL:AAFI02000019 GO:GO:0006364 InterPro:IPR022967 SMART:SM00316
PANTHER:PTHR21321 eggNOG:COG1097 KO:K03681 OMA:HKEPGSG
RefSeq:XP_642864.1 ProteinModelPortal:Q7KWX9 STRING:Q7KWX9
EnsemblProtists:DDB0168296 GeneID:8620730 KEGG:ddi:DDB_G0276783
ProtClustDB:CLSZ2430854 Uniprot:Q7KWX9
Length = 237
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 73/208 (35%), Positives = 127/208 (61%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYY-VDYIQRRYVPTRGDLVI 61
GD + + ++ +GPGL + +L +++G+LR++K +Y ++ Q+RYVP D+VI
Sbjct: 12 GDVIGKIGDLKVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQKRYVPQVEDMVI 71
Query: 62 GVVTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEM 121
G + + ++++VDIGS A+LS +FEGATK N P + G+++ ++ AN+DME E+
Sbjct: 72 GTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCRVTVANRDMEPEV 131
Query: 122 VCVDSRGKEFIMGILNDGYLLHTSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKI 181
VC+ + K G L GY+L+ S+ L LL+ C LL+ L K E+++G+NG++
Sbjct: 132 VCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSEDCFLLQILGKHI--PYEIAVGVNGRV 189
Query: 182 WIRCESFSDTVRVGNLIMSCELLSYEEI 209
WI S +T+ V N I + + + ++I
Sbjct: 190 WINSGSNHNTIVVSNTIYNSQYIQDDQI 217
>POMBASE|SPAC22A12.12c [details] [associations]
symbol:SPAC22A12.12c "exosome subunit Rrp40
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000176
"nuclear exosome (RNase complex)" evidence=ISO] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR026699 PROSITE:PS50126 PomBase:SPAC22A12.12c
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000177
GO:GO:0000467 GO:GO:0070651 GO:GO:0071042 GO:GO:0070478
GO:GO:0070481 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
eggNOG:COG1097 HOGENOM:HOG000184644 KO:K03681 OMA:HKEPGSG
PIR:T38152 RefSeq:NP_593242.1 ProteinModelPortal:O13903
STRING:O13903 PRIDE:O13903 EnsemblFungi:SPAC22A12.12c.1
GeneID:2541837 KEGG:spo:SPAC22A12.12c OrthoDB:EOG45QMPG
NextBio:20802925 Uniprot:O13903
Length = 240
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 80/207 (38%), Positives = 119/207 (57%)
Query: 16 LGPGL----RRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDN 71
LGPGL + I+VS++G L +D +RY+P D VIG + SR +
Sbjct: 32 LGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKRYIPATNDQVIGQIISRFAEG 91
Query: 72 YRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSR-GKE 130
YRVDIGS A L+ LAFE T+K+ P + G +V ++ A++DME E+ C D+ GK
Sbjct: 92 YRVDIGSAHIAQLNALAFENVTRKSRPNLNVGSLVYARVSLADRDMEPELECFDATTGKA 151
Query: 131 FIMGILNDGYLLH-TSISLCRKLLNPKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFS 189
G L +GY++ S+S CRKL+ PK LL+ L S E+++GMNG++W+ E+ S
Sbjct: 152 AGYGELKNGYMITGLSLSHCRKLILPKNTLLQTLG--SYIPFEIAVGMNGRVWVNSENLS 209
Query: 190 DTVRVGNLIMSCELLSYEEILNLCESI 216
TV + I +CE +S EE + C+ +
Sbjct: 210 TTVLICTAIRNCEFMSDEEQIKYCKDL 236
>TAIR|locus:505006271 [details] [associations]
symbol:AT2G25355 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] InterPro:IPR026699 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0000178 EMBL:AC006300
EMBL:AC007070 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
HOGENOM:HOG000184644 KO:K03681 OMA:HKEPGSG ProtClustDB:CLSN2688410
EMBL:AY045654 EMBL:BT000534 IPI:IPI00547236 RefSeq:NP_565592.1
UniGene:At.13764 ProteinModelPortal:Q94AW9 SMR:Q94AW9 IntAct:Q94AW9
STRING:Q94AW9 PRIDE:Q94AW9 DNASU:817074 EnsemblPlants:AT2G25355.1
GeneID:817074 KEGG:ath:AT2G25355 TAIR:At2g25355 InParanoid:Q94AW9
PhylomeDB:Q94AW9 ArrayExpress:Q94AW9 Genevestigator:Q94AW9
Uniprot:Q94AW9
Length = 241
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 74/191 (38%), Positives = 111/191 (58%)
Query: 16 LGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGDNYRVD 75
LG GLR+++ I V ++G LR++KP Y+V+ +RYVP D V+G+V G+NY +D
Sbjct: 36 LGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCKGENYWID 95
Query: 76 IGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVDSRGKEFIMGI 135
I A+L LAFEGA ++N PK E ++ +++ N M E+ CVD GK G
Sbjct: 96 IKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESGKAAGFGP 155
Query: 136 LNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTVRV 194
L DG++ TS L R LL+ P CP+L+ L K+ E + G+NG+ W+ + + V
Sbjct: 156 LKDGFMFETSTGLSRMLLSSPTCPVLEALGKKL--SFETAFGLNGRCWVHAAAPRIVIIV 213
Query: 195 GNLIMSCELLS 205
N +M+ E LS
Sbjct: 214 ANALMNSETLS 224
>TAIR|locus:504955555 [details] [associations]
symbol:AT4G32175 "AT4G32175" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR026699 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 GO:GO:0000178
InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321 eggNOG:COG1097
HOGENOM:HOG000184644 KO:K03681 UniGene:At.28173 OMA:SYMAFPN
EMBL:BT022096 EMBL:BT026414 IPI:IPI00523442 RefSeq:NP_680755.2
UniGene:At.54574 UniGene:At.75510 ProteinModelPortal:Q500X1
IntAct:Q500X1 STRING:Q500X1 EnsemblPlants:AT4G32175.1 GeneID:829350
KEGG:ath:AT4G32175 TAIR:At4g32175 InParanoid:Q500X1
PhylomeDB:Q500X1 ProtClustDB:CLSN2688410 Genevestigator:Q500X1
Uniprot:Q500X1
Length = 241
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 71/203 (34%), Positives = 118/203 (58%)
Query: 4 DTLSLNAEPRLILGPGLRRESSAILVSQSGILRHAKPFTYYVDYIQRRYVPTRGDLVIGV 63
D ++N + + LG GL +++ AI ++G L ++KP Y+++ +RY+P D V+G+
Sbjct: 25 DLSNMNNQT-IKLGSGLLQDNDAISAMRAGKLSYSKPNKYWLESSHKRYIPRPDDHVLGI 83
Query: 64 VTSRVGDNYRVDIGSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVC 123
V DN+ VDI A+L LAFEG T++N PK E G ++ +++ N M E+ C
Sbjct: 84 VVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKFEVGTLLYLRVVKTNIGMNPELSC 143
Query: 124 VDSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIGMNGKIW 182
++ GK + G L DG++ TS L R LLN P P+++ L K+ E+++G+NG++W
Sbjct: 144 TEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPVIEALGKKL--SFEIAVGLNGRVW 201
Query: 183 IRCESFSDTVRVGNLIMSCELLS 205
+ + + V N IM+ E LS
Sbjct: 202 VNATAPRIVIIVANAIMNSESLS 224
>CGD|CAL0004045 [details] [associations]
symbol:orf19.3304 species:5476 "Candida albicans" [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] InterPro:IPR026699 CGD:CAL0004045
GO:GO:0003723 GO:GO:0000178 EMBL:AACQ01000045 EMBL:AACQ01000042
PANTHER:PTHR21321 eggNOG:COG1097 KO:K03681 RefSeq:XP_718127.1
RefSeq:XP_718396.1 ProteinModelPortal:Q5A930 STRING:Q5A930
GeneID:3639922 GeneID:3640204 KEGG:cal:CaO19.10814
KEGG:cal:CaO19.3304 Uniprot:Q5A930
Length = 270
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 69/199 (34%), Positives = 122/199 (61%)
Query: 1 MAGDTLSLNAE---PRLILGPGLRRE--SSAILVSQSGILRH--AKPFTYYVDYIQ---R 50
+ GD L ++ + + +GPG+ ++ + ++ S +GIL + AK + + YI+ +
Sbjct: 7 LPGDKLPIDEDIFTVKTTIGPGIYKKPKTQELIPSAAGILHYERAKSSSQQLIYIESNSK 66
Query: 51 RYVPTRGDLVIGVVTSRVGDNYRVDIGSHD-PAVLSYLAFEGATKKNPPKVETGDVVAGK 109
RY+P D VIG++T +G++Y+V + S+ P +LS+ AF A+KKN P ++ G V +
Sbjct: 67 RYIPHTNDYVIGIITGAIGESYKVSLQSNSTPVLLSFWAFPNASKKNRPNLKNGQAVYAR 126
Query: 110 LLTANKDMESEMVCVD-SRGKEFIMGILND-GYLLHTSISLCRKLL-NPKCPLLKQLAKR 166
+ ++E+E+ C+D + GKE G+L++ GY+ ++ R+LL NPK L+ LA R
Sbjct: 127 VSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFARELLFNPKTIFLETLATR 186
Query: 167 SRQKMELSIGMNGKIWIRC 185
+ E++IG+NGKIWI+C
Sbjct: 187 CQ--FEIAIGINGKIWIKC 203
>UNIPROTKB|G5EH77 [details] [associations]
symbol:MGCH7_ch7g600 "Exosome complex exonuclease RRP40"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR026699 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 EMBL:CM000230 EMBL:CM001237 PANTHER:PTHR21321
KO:K03681 RefSeq:XP_003720894.1 ProteinModelPortal:G5EH77
EnsemblFungi:MGG_02843T0 GeneID:2682396 KEGG:mgr:MGG_02843
Uniprot:G5EH77
Length = 264
Score = 175 (66.7 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 49/129 (37%), Positives = 72/129 (55%)
Query: 14 LILGPGLRR-ESSAILVSQSG--ILRHAKPFTYYVDYIQRRYVPTRGDLVIGVVTSRVGD 70
L LGPGLR I+ + +G ++ AKP + +DY RYVP DLVIG V D
Sbjct: 29 LRLGPGLRHIPPDEIVPTVAGKLVVNPAKP-SLSLDYNGGRYVPEPNDLVIGQVHHSSAD 87
Query: 71 NYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMESEMVCVD-SRG 128
+ V + H A+L LAFEGAT+K P + G +V ++ +A++ M++E+ C + G
Sbjct: 88 FHFVTLAPHTTNALLPVLAFEGATRKTRPVLPAGSLVYARVASASRHMDAELECFSQTTG 147
Query: 129 KEFIMGILN 137
K +G LN
Sbjct: 148 KADGLGPLN 156
Score = 76 (31.8 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 139 GYLLHTSISLCRKLLNPKCP------LLKQLAKRSRQKMELSIGMNGKIWIRCESFSDTV 192
G + + S+ + R+LL P+ +L LA E ++G NGK+W+ ES V
Sbjct: 175 GTVFNVSLGMARRLLMPQAERDAGLVVLDALAAEGLA-FETAVGRNGKVWVASESVPTLV 233
Query: 193 RVGNLI 198
VG +
Sbjct: 234 LVGRAL 239
>ASPGD|ASPL0000071151 [details] [associations]
symbol:AN4617 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR026699 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 EMBL:BN001303 EMBL:AACD01000079 PANTHER:PTHR21321
eggNOG:COG1097 HOGENOM:HOG000184644 KO:K03681 RefSeq:XP_662221.1
ProteinModelPortal:Q5B4B3 STRING:Q5B4B3
EnsemblFungi:CADANIAT00005818 GeneID:2872412 KEGG:ani:AN4617.2
OMA:CISEAQY OrthoDB:EOG4C2MKR Uniprot:Q5B4B3
Length = 273
Score = 156 (60.0 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 50/159 (31%), Positives = 76/159 (47%)
Query: 3 GDTLSLNAEPRLILGPGLRRESSAILVSQSGILR--HAKPFTYYVDYIQRRYVPTRGDLV 60
G L L ++P PG S + +Q+G+L + + + RRYVPT DLV
Sbjct: 28 GQGLRLLSQP-----PGTTPSSHVLTATQAGVLSTDNKRNAVSILSSSNRRYVPTTNDLV 82
Query: 61 IGVVTSRVGDNYRVDIGSHDP-AVLSYLAFEGATKKNPPKVETGDVVAGKLLTAN--KDM 117
I V D + I P A+L L+FEGATKK P ++ GD+V ++L+
Sbjct: 83 IAQVHHSSADYFHCMITPQSPHALLGQLSFEGATKKTRPMLKGGDLVYARVLSTGLGPGA 142
Query: 118 ESEMVCVD-SRGKEFIMGI--LNDGYLLHTSISLCRKLL 153
E E+ CV+ + GK G+ L G + S + +L+
Sbjct: 143 EVELTCVNPATGKAEPGGLGPLTGGMVFDISTGMAARLI 181
Score = 66 (28.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 159 LLKQLAKRSRQK--MELSIGMNGKIWIRCE-SFSDTVRVGNLIMSC 201
+L +L K+ + E+++G NGK+W+ C S D ++ I C
Sbjct: 199 VLDELGKKLEKVGGFEIAVGRNGKVWVDCSNSEEDAIKATVAIGRC 244
>UNIPROTKB|Q95Z14 [details] [associations]
symbol:RRP40 "Rrp40p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178 PANTHER:PTHR21321
eggNOG:COG1097 EMBL:AJ308996 ProteinModelPortal:Q95Z14
IntAct:Q95Z14 STRING:Q95Z14 GenomeReviews:CM000207_GR
EuPathDB:TriTrypDB:Tb427tmp.160.5160 HOGENOM:HOG000255001
ProtClustDB:CLSZ2443530 Uniprot:Q95Z14
Length = 304
Score = 114 (45.2 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 36/103 (34%), Positives = 52/103 (50%)
Query: 23 ESSAILVSQ--SGILRHAKP-FT--YYVDY-IQRRYVPTRGDLVIGVVTSRVGDNYRVDI 76
E S ++VS+ +LR A P T Y ++ RRY+ D V+ +V + Y
Sbjct: 67 EGSTVVVSEFCGPVLRTAGPNHTQLYKLNGPAARRYMYAARDPVVAIVMKKNASYYSCYT 126
Query: 77 GSHDPAVLSYLAFEGATKKNPPKVETGDVVAGKLLTANKDMES 119
G+ AVL L F+GATK N P+++ GDVV + N D S
Sbjct: 127 GAASLAVLDALGFDGATKTNKPRLQEGDVVYA-FVKGNADASS 168
Score = 70 (29.7 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 118 ESEMVCVDSRGKEFIMGILNDGYLLHTSISLCRKLLN-PKCPLLKQLAKRSRQKMELSIG 176
E +V D E + G L G ++ ++ R L++ P LL L R ++ +G
Sbjct: 194 EVGLVARDWTSAEAVFGPLVGGTVVRVALPYARSLIDGPASRLLALLG--DRVPYDVCVG 251
Query: 177 MNGKIWIR 184
+NG +W+R
Sbjct: 252 VNGLVWVR 259
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 222 0.00096 112 3 11 22 0.37 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 596 (63 KB)
Total size of DFA: 169 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.45u 0.07s 18.52t Elapsed: 00:00:10
Total cpu time: 18.46u 0.07s 18.53t Elapsed: 00:00:10
Start: Thu Aug 15 11:28:32 2013 End: Thu Aug 15 11:28:42 2013