BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2300
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 314 bits (805), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 149/192 (77%), Positives = 169/192 (88%), Gaps = 1/192 (0%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
FDY FK+LIIGNSSVGKTSFLFRYADDSFT AFVSTVGIDFKVKT++R+DKR+KLQIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AG ERYRTITTAYYRGA GFIL YD+TNEESF ++QDW TQIKTYSWDNAQV+LVGNKCD
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLD-SDPNL 196
EDERV+S ERG+ LA+ LG EFFE SAKDN+NVK FERLVD+IC+K SESLD +DP +
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADPAV 184
Query: 197 VAGPKGTRLTEQ 208
+G +LT+Q
Sbjct: 185 TGAKQGPQLTDQ 196
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 310 bits (793), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 145/173 (83%), Positives = 161/173 (93%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
NFDYMFKLLIIGNSSVGKTSFLFRYADD+FT AFVSTVGIDFKVKTV+RH+KRVKLQIWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQERYRTITTAYYRGAMGFILMYD+TNEESF ++QDW TQIKTYSWDNAQVILVGNKC
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
DME+ERV+ E+G+ LAE LG +FFE SAK+N++V+ FERLVD ICDKMS+S
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 310 bits (793), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 144/169 (85%), Positives = 159/169 (94%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
NFDYMFK+LIIGNSSVGKTSFLFRYADDSFT AFVSTVGIDFKVKT++R+DKR+KLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQERYRTITTAYYRGAMGFILMYD+TNEESF ++QDW TQIKTYSWDNAQV+LVGNKC
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
DMEDERV+S ERG+ LA+ LG EFFE SAKDN+NVK FERLVD+IC+K
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 305 bits (781), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 158/170 (92%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
DYMFKLL+IGNSSVGKTSFLFRYADDSFT AFVSTVGIDFKVKTV+RHDKR+KLQIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
GQERYRTITTAYYRGAMGF+LMYD+ N+ESF ++QDW TQIKTYSWDNAQVILVGNKCD+
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
EDERV+ E G+ LA+ LG EFFE SAK+N+NVK VFERLVD+IC+KM+E
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 206 bits (525), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 136/174 (78%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+ +DY+FKLL+IG+S VGKT LFR+++D+F S F+ST+GIDFK++T+ KR+KLQIW
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
DTAGQER+RTITTAYYRGAMG +L+YD+TNE+SF +I++WI I+ ++ + + +++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
CD+ D+R +S ERG+ LA G++F ETSAK N+NV+ F L I KM ++
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN 176
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 134/172 (77%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
+ DY+FKLL+IG+S VGKT LFR+++D+F S F+ST+GIDFK++T+ KR+KLQIWD
Sbjct: 2 HMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQER+RTITTAYYRGAMG +L+YD+TNE+SF +I++WI I+ ++ + + +++GNKC
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
D+ D+R +S ERG+ LA G++F ETSAK N+NV+ F L I KM +
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 127/161 (78%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ +K VKLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT+ +SF +++ WI +I Y+ +N +LVGNKCD
Sbjct: 66 AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
+ +RV++ + G+ LA+S G++F ETSAK+ NV+ F +
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 130/182 (71%), Gaps = 6/182 (3%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LVGNKCD
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNLV 197
+ ++V+ + K A+SLG+ F ETSAK+ NV+ F + I +M P
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG------PGAT 186
Query: 198 AG 199
AG
Sbjct: 187 AG 188
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 127/169 (75%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 22 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LVGNKCD
Sbjct: 82 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
+ ++V+ + K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 142 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 127/169 (75%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 3 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LVGNKCD
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
+ ++V+ + K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 126/169 (74%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IG+S VGK L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LVGNKCD
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
+ ++V+ + K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 132/171 (77%), Gaps = 1/171 (0%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+++D + K+L+IG+S VGK+ L R+ +D F +F++T+GIDFK+KTV + K+VKLQ+W
Sbjct: 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
DTAGQER+RTITTAYYRGAMG IL+YDVT+E +FT+I+ W + ++ D AQ++LVGNK
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
DME RV++ ++G+ LA+ LG+ F E+SAK++ NV +F L +I +K+
Sbjct: 135 SDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 125/163 (76%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
+ + +DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KL
Sbjct: 25 SXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
QIWDTAGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LV
Sbjct: 85 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 144
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
GNKCD+ ++V+ + K A+SLG+ F ETSAK+ NV+ F
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 129/168 (76%), Gaps = 1/168 (0%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D + K+L+IG+S VGK+ L R+ +D F +F++T+GIDFK+KTV + K+VKLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
GQER+RTITTAYYRGAMG IL+YD+T+E +FT+I+ W + ++ D AQ++LVGNK DM
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
E RV++ ++G+ LA+ LG+ F E+SAK++ NV +F L +I +K+
Sbjct: 121 E-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 127/171 (74%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IGNS VGK+ L R++DD++T+ ++ST+G+DFK+KTV K VKLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRG+ G I++YDVT++ESF ++ W+ +I Y+ +LVGNKCD
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
++D+RV+ ++ K A++ + F ETSA D+ NV+ F + I + MS+
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 126/169 (74%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+D +FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 3 YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LVGNKCD
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
+ ++V+ + K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 127/171 (74%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IGNS VGK+ L R++DD++T+ ++ST+G+DFK+KTV K VKLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRG+ G I++YDVT++ESF ++ W+ +I Y+ +LVGNKCD
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
++D+RV+ ++ K A++ + F ETSA D+ NV+ F + I + MS+
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 126/169 (74%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LVG KCD
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
+ ++V+ + K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 125 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K+L+IG+S VGK+ L R+ +D F +F++T+GIDFK+KTV + K+VKLQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140
ER+RTITTAYYRGAMG IL+YDVT+E +FT+I+ W + ++ D AQ++LVGNK DME
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 125
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
RV++ ++G+ LA+ LG+ F E+SAK++ NV +F L +I +K+
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 186 bits (473), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 125/169 (73%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT++ES+ +++ W+ +I Y+ +N +LVGNK D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
+ ++V+ K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 125/169 (73%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRGA G I++YDVT++ES+ +++ W+ +I Y+ +N +LVGNK D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
+ ++V+ K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 121/158 (76%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IGNS VGK+ L R++DD++T+ ++ST+G+DFK+KTV K VKLQIWDT
Sbjct: 18 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRG+ G I++YDVT++ESF ++ W+ +I Y+ +LVGNKCD
Sbjct: 78 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
++D+RV+ ++ K A++ + F ETSA D+ NV+ F
Sbjct: 138 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 134/189 (70%), Gaps = 11/189 (5%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK-TVFRHD----- 67
+D ++DY+ K L +G+S VGKTS L++Y D F S F++TVGIDF+ K V+R +
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 68 ----KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS 123
+R+ LQ+WDTAG ER+R++TTA++R AMGF+L++D+TNE+SF ++++WI+Q++ ++
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 124 W-DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+ +N ++L GNK D+ED+R + E + LAE G+ +FETSA + N+ E L+D+I
Sbjct: 124 YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
Query: 183 CDKMSESLD 191
+M S+D
Sbjct: 184 MKRMERSVD 192
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D + K+L+IG+S VGK+ L R+ +D F +F++T+GIDFK+KTV + K+VKLQIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
GQER+RTITTAYYRGA G IL+YD+T+E +FT+I+ W + ++ D AQ++LVGNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
E RV++ ++G+ LA+ LG+ F E+SAK++ NV +F L +I +K+
Sbjct: 121 E-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 122/164 (74%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER 142
+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LVGNKCD+ ++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 143 VISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
V+ + K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D + K+L+IG+S VGK+ L R+ +D F +F++T+GIDFK+KTV + K+VKLQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
GQER+RTITTAYYRGA G IL+YDVT+E +FT+I+ W + ++ D AQ++LVGNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
E RV++ ++G+ LA+ LG+ F E+SAK++ NV +F L +I +K+
Sbjct: 121 E-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 142/220 (64%), Gaps = 17/220 (7%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK------ 68
D ++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGIDF+ K V +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 69 ----RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW 124
+V LQ+WDTAG ER+R++TTA++R AMGF+LM+D+T+++SF ++++W++Q++ ++
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 125 -DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
+N ++L+GNK D+ D+R ++ + + LAE G+ +FETSA NV+ E L+D+I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 184 DKMSESLDSD--PNLVAGPKGTRLTEQPQRNNPINPNCNC 221
+M + ++ P+ V G +L + P C C
Sbjct: 185 KRMEKCVEKTQVPDTVNGGNSGKLDGE----KPAEKKCAC 220
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 176 bits (447), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 137/196 (69%), Gaps = 13/196 (6%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK-------- 68
++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGIDF+ K V + +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 69 --RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-D 125
+V LQ+WDTAGQER+R++TTA++R AMGF+LM+D+T+++SF ++++W++Q++ ++ +
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 126 NAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
N ++L+GNK D+ D+R ++ + + LA+ G+ +FETSA NV+ E L+D+I +
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 186 MSESLDSD--PNLVAG 199
M + ++ P+ V G
Sbjct: 201 MEQCVEKTQIPDTVNG 216
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 130/175 (74%), Gaps = 1/175 (0%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+++D++FKLLIIG+S VGK+S L R+AD++F+ ++++T+G+DFK++TV + ++VKLQIW
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
DTAGQER+RTIT+ YYRG G I++YDVT+ ESF +++ W+ +I + D+ ILVGNK
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGNK 122
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESL 190
D + +V+ E A +G++ FETSAK+NVNV+ +F + +++ ++L
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 177
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 132/188 (70%), Gaps = 11/188 (5%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK------ 68
D ++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGIDF+ K V +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 69 ----RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW 124
+V LQ+WDTAG ER+R++TTA++R AMGF+LM+D+T+++SF ++++W++Q++ ++
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 125 -DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
+N ++L+GNK D+ D+R ++ + + LAE G+ +FETSA NV+ E L+D+I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 184 DKMSESLD 191
+M + ++
Sbjct: 185 KRMEKCVE 192
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 121/169 (71%), Gaps = 1/169 (0%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D+ +++IIG+ VGKTS + R+ DD+F A STVG+DFK+KTV K+++LQIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
GQER+ +IT+AYYR A G IL+YD+T +E+F + W+ I Y+ ++A+++LVGNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 139 EDERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLVDIICDKM 186
E +R I+ ++G+ A+ + G+ F E SAKDN NV +F +LVD I KM
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 13/198 (6%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK------ 68
D ++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGIDF+ K V +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 69 ----RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW 124
+V LQ+WDTAG ER+R++TTA++R A GF+L +D+T+++SF ++++W +Q++ ++
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 125 -DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
+N ++L+GNK D+ D+R ++ + + LAE G+ +FETSA NV+ E L+D+I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 184 DKMSESLDSD--PNLVAG 199
+ + ++ P+ V G
Sbjct: 185 KRXEKCVEKTQVPDTVNG 202
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 128/188 (68%), Gaps = 11/188 (5%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK------ 68
D ++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGIDF+ K V +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 69 ----RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW 124
+V LQ+WDTAG ER+R++TTA++R A GF+L +D+T+++SF ++++W +Q++ ++
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 125 -DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
+N ++L+GNK D+ D+R ++ + + LAE G+ +FETSA NV+ E L+D+I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 184 DKMSESLD 191
+ + ++
Sbjct: 185 KRXEKCVE 192
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRHDKRVKLQIWD 76
+D FK++++G+S VGKT L R+ D +F + F+STVGIDF+ K + +VKLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQER+R++T AYYR A +L+YDVTN+ SF +IQ W+T+I Y+ + ++L+GNK
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
D ERV+ E G+ LA+ G+ F ETSAK +NV F
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 127/215 (59%), Gaps = 10/215 (4%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
++D +FK+++IG+S VGK++ L R+ + F ST+G++F +T+ KR+K QIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQERYR IT+AYYRGA+G +++YD++ S+ + W+++++ + DN V L+GNK
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE-------- 188
D+ R + E K A+ + F ETSA ++ NV FE L++ I K+S+
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 189 SLDSDPNLVAGPKGT--RLTEQPQRNNPINPNCNC 221
S + + N + P G LT P N N N C
Sbjct: 189 SANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 120/174 (68%), Gaps = 3/174 (1%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+++D++FK+++IGN+ VGKT + R+ F +T+G+DF +KTV + ++VKLQIW
Sbjct: 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
DTAGQER+R+IT +YYR A IL YD+T EESF + +W+ +I+ Y+ + +LVGNK
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
D+ + R +S +R + +E+ + + ETSAK++ NV+ +F +D+ C +SE+
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF---LDLACRLISEA 191
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
D+ +D++FKL+++G++SVGKT + R+ +F+ ST+G+DF +KT+ KRVKLQI
Sbjct: 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAGQER+RTIT +YYR A G IL YD+T SF S+ WI ++ Y+ N +L+GN
Sbjct: 83 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
Query: 135 KCDMEDERVISFERGKHLAESLGVE-FFETSAKDNVNVKGVFERL 178
K D+ + R +S + LAE + ETSAKD+ NV+ F R+
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 115/168 (68%), Gaps = 1/168 (0%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FRHDKRVKLQIWD 76
+DY+FK+++IG+S VGK++ L R+ D F ST+G++F K++ +++K +K QIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQERYR IT+AYYRGA+G +L+YD+T + SF +I+ W+ +++ + N ++LVGNK
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICD 184
D++ RVI+ A+ + F ETSA + NV+ F +L++ I +
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYN 171
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 110/165 (66%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAGQERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N ++LVGN
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
K D+ R + + + AE G+ F ETSA D+ NV+ F+ ++
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 94/115 (81%)
Query: 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83
LL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KLQIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 84 RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LVGNKCD+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 110/163 (67%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
++DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QIWD
Sbjct: 16 SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N ++LVGNK
Sbjct: 76 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 135
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+ R + + + AE G+ F ETSA D+ NV+ F+ ++
Sbjct: 136 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 178
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 104/157 (66%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ ++LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + +++YD+TN SF WI ++T + ++LVGNK D+ D+
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
R +S E G+ A+ L V F ETSAK NVK +F R+
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 5/200 (2%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ ++LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + +++YD+TN SF WI ++T + ++LVGNK D+ D+
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNLVAGPK 201
R +S E G+ A+ L V F ETSAK NVK +F R+ + S S +++
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMI---- 189
Query: 202 GTRLTEQPQRNNPINPNCNC 221
+L E+PQ C+C
Sbjct: 190 DIKL-EKPQEQPVSEGGCSC 208
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 106/163 (65%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ V+LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + +++YD+TN SF WI ++T + ++LVGNK D+ D+
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICD 184
R I+ E G+ A+ L V F ETSAK NVK +F R+ + +
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 109/165 (66%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAG ERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N ++LVGN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
K D+ R + + + AE G+ F ETSA D+ NV+ F+ ++
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 104/157 (66%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ V+LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + +++YD+TN SF WI ++T + ++LVGNK D+ D+
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
R +S E G+ A+ L V F ETSAK NVK +F R+
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 104/157 (66%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ V+LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + +++YD+TN SF WI ++T + ++LVGNK D+ D+
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
R +S E G+ A+ L V F ETSAK NVK +F R+
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
D++ K+LIIG S VGK+S L R+ DD+F +T+G+DFKVKT+ + KL I
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQV-ILVG 133
WDTAGQER+RT+T +YYRGA G IL+YDVT ++F + +W+ +++TY N V LVG
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
NK D E+ R + G A F E SAK V+ FE LV+ I
Sbjct: 129 NKIDKEN-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 114/175 (65%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
++++++FK+++IG S VGKT+ L R+ + F+ +T+G++F +TV VK Q
Sbjct: 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQ 77
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
IWDTAG ERYR IT+AYYRGA+G +L++D+T +++ ++ W+ ++ ++ V+LVG
Sbjct: 78 IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG 137
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
NK D+ R + E + AE+ G+ F ETSA D+ NV+ FE ++ I K+S+
Sbjct: 138 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 108/165 (65%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAG ERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N + LVGN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
K D+ R + + + AE G+ F ETSA D+ NV+ F+ ++
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 169
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 114/173 (65%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
++++++FK+++IG S VGKT+ L R+ + F+ +T+G++F +TV VK QIW
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
DTAG ERYR IT+AYYRGA+G +L++D+T +++ ++ W+ ++ ++ V+LVGNK
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
D+ R + E + AE+ G+ F ETSA D+ NV+ FE ++ I K+S+
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 177
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 114/176 (64%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N ++LVGNK D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSD 193
+ R + + + AE + F ETSA D+ NV+ F+ ++ I +S+ +D
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 177
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 102/162 (62%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
A N+ Y+FK +IIG+ VGK+ L ++ + F + T+G++F + + +++KLQ
Sbjct: 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
IWDTAGQER+R +T +YYRGA G +++YD+T ++ + W+T + + N +IL+G
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
NK D+E +R +++E K AE G+ F E SAK NV+ F
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 103/157 (65%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ V+LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + +++YD+TN SF WI ++T + ++LVGNK D+ D+
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
R +S E G+ A+ L V F ETSAK NVK +F R+
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 108/162 (66%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QIWDT
Sbjct: 5 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 64
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AG ERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N ++LVGNK D
Sbjct: 65 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
+ R + + + AE G+ F ETSA D+ NV+ F+ ++
Sbjct: 125 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 166
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 103/157 (65%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ V+LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + +++YD+TN SF WI ++T + ++LVGNK D+ D+
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
R +S E G+ A+ L V F ETSAK NVK +F R+
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 107/162 (66%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AG ERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N + LVGNK D
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
+ R + + + AE G+ F ETSA D+ NV+ F+ ++
Sbjct: 122 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 163
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 112/176 (63%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
A ++DY+FK+++IG+S VGK++ L R+ D F ST+G++F +T+ +K++K
Sbjct: 2 AMGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKA 61
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
QIWDTAG ERYR IT+AYYRGA+G +++YD++ S+ + W+T+++ + DN V L+
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI 121
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
GNK D+ R + + K+ A + F ETSA ++ NV F L+ I +S+
Sbjct: 122 GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 103/171 (60%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
Y+FK +IIG++ VGK+ L ++ D F T+G++F + V K++KLQIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
QE +R+IT +YYRGA G +L+YD+T E+F + W+ + +S N ++L+GNK D+E
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESL 190
R + E G+ A G+ F ETSAK NV+ F I K+ + L
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 101/162 (62%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
A N+ Y+FK +IIG+ VGK+ L ++ + F + T+G++F + + +++KLQ
Sbjct: 23 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
IWDTAGQ R+R +T +YYRGA G +++YD+T ++ + W+T + + N +IL+G
Sbjct: 83 IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
NK D+E +R +++E K AE G+ F E SAK NV+ F
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 184
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D++FK L+IG++ GK+ L ++ ++ F T+G++F + V K VKLQIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
GQER+R++T +YYRGA G +L+YD+T+ E++ S+ W+T +T + N VIL GNK D+
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDP 194
+ ER ++F A+ + F ETSA NV+ F + I +K+ +S + DP
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI-DSGELDP 197
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 107/170 (62%), Gaps = 4/170 (2%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
Y FK++++G VGKTS + RY ++ F ++T+G F K + KRV L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
QER+ + YYR + G IL+YD+T+E+SF +++W+ +++ + + +VGNK D+E
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
ER +S + + AES+G + + TSAK N KG+ E +D +C +M E+
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQN---KGIEELFLD-LCKRMIET 170
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 99/158 (62%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+ Y+FK +IIG++ VGK+ L ++ D F T+G++F + + K++KLQIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQE +R+IT +YYRGA G +L+YD+T ++F + W+ + +S N ++L+GNK D
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
+E R + E G+ A G+ F ETSAK NV+ F
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 111/179 (62%), Gaps = 1/179 (0%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+ +D++FK L+IGN+ GK+ L ++ + F T+G++F K + K VKLQIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
DTAGQER+R++T +YYRGA G +L+YD+T+ E++ ++ +W+T + + N +IL GNK
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDP 194
D++ +R ++F A+ + F ETSA NV+ F + I +K+ ES + DP
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI-ESGELDP 182
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 106/170 (62%), Gaps = 4/170 (2%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
Y FK++++G VGKTS + RY ++ F ++T+ F K + KRV L IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
QER+ + YYR + G IL+YD+T+E+SF +++W+ +++ + + +VGNK D+E
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
ER +S + + AES+G + + TSAK N KG+ E +D +C +M E+
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQN---KGIEELFLD-LCKRMIET 184
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 106/170 (62%), Gaps = 4/170 (2%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
Y FK++++G VGKTS + RY ++ F ++T+ F K + KRV L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
QER+ + YYR + G IL+YD+T+E+SF +++W+ +++ + + +VGNK D+E
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
ER +S + + AES+G + + TSAK N KG+ E +D +C +M E+
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQN---KGIEELFLD-LCKRMIET 170
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 97/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S+VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK ++NV +F
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 161
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 97/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S+VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK ++NV +F
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK ++NV +F
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK ++NV +F
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK ++NV +F
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK ++NV +F
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S+VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK + NV +F
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIF 161
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK ++NV +F
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 103/156 (66%), Gaps = 6/156 (3%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+K+++ G+++VGK+SFL R + F +T+G+DF++KT+ +R LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED- 140
R+R+I +Y+R A G +L+YDVT E+SF +I++W+ I+ + + ++LVGNK D+ D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 141 -----ERVISFERGKHLAESLGVEFFETSAKDNVNV 171
++ + G+ LA + G F ETSAKD N+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 105/172 (61%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
+ +D++FK L+IGN+ GK+ L ++ + F T+G++F K + K VKLQ
Sbjct: 4 GSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 63
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
IWDTAGQER+R++T +YYRGA G +L+YD+T+ E++ ++ +W+T + + N +IL G
Sbjct: 64 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
NK D++ +R ++F A+ + F ETSA +V+ F + I +K
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 96/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S+VGK+S + R+ F ST+G F +TV D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ ++
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK ++NV +F
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 159
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 99/156 (63%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+ +G +VGKTS + R+ D+F + + ST+GIDF KT++ + V+LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + I++YD+TN +SF + WI I + + LVGNK D+ D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177
R +++E G A+ F ETSAK N+K +F++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKK 157
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 104/170 (61%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+ +D++FK L+IGN+ GK+ L ++ + F T+G++F K + K VKLQIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
DTAG ER+R++T +YYRGA G +L+YD+T+ E++ ++ +W+T + + N +IL GNK
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
D++ +R ++F A+ + F ETSA +V+ F + I +K
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 96/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S+VGK+S + R+ F ST+G F ++V D VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TN+E+F + W+ +++ + + + L GNK D+ ++
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R++ +E + A+ + F ETSAK +NV +F
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 162
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 94/154 (61%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S+VGK+S + R+ F ST+G F +TV D VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TN ++F ++W+ +++ + N + L GNK D+ +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK +NV +F
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 157
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 97/155 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ ++G++ VGK+S + R+ D F T+G F KTV ++ K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+ ++ YYRG+ +++YD+T ++SF +++ W+ ++K + +N + + GNKCD+ D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
R + + K AES+G ETSAK+ +N++ +F+
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 98/154 (63%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ ++G++ VGK+S ++R+ +DSF T+G F KTV ++ K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R + YYRG+ I++YD+T EE+F+++++W+ +++ + + V + GNKCD+ D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + K A+S+ F ETSAK+ +N+ +F
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELF 159
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 93/154 (60%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S+VGK+S + R+ F ST+G F +TV D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TN ++F ++W+ +++ + N + L GNK D+ +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK +NV +F
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 97/154 (62%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ ++G++ VGK+S ++R+ +DSF T+G F KTV ++ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R + YYRG+ I++YD+T EE+F+++++W+ +++ + + V + GNKCD+ D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + K A+S+ F ETSAK+ +N+ +F
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELF 160
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 93/154 (60%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G S+VGK+S + R+ F ST+ F +TV D VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
RY ++ YYRGA I++YD+TN ++F ++W+ +++ + N + L GNK D+ +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
R + F+ + A+ + F ETSAK +NV +F
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 126 bits (316), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 95/163 (58%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
AA N KL+++G+ GK+S + R+ D F ST+G F +T+ +D VK
Sbjct: 4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKF 63
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
+IWDTAGQERY ++ YYRGA I+++DVTN+ SF + W+ +++ N + L
Sbjct: 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALA 123
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
GNK D+ D R ++ E + A+ G+ F ETSAK NVK +F
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FRHDKRVKLQIWDTAG 79
+ K++I+G+S VGKTS + RY +D ++ + +T+G DF K V DK +Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDW----ITQIKTYSWDNAQVILVGNK 135
QER++++ A+YRGA +L+YDVTN SF +I+ W + S + +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 136 CDMED-ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERL 178
D E+ ++++S + + LA+SLG + F TSAK+ +NV FE +
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+FK+++IG+S+VGKT +R+ F +T+G+DF+ + V +R+K+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 81 ERYR-TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDN-AQVILVGNKCDM 138
ER+R ++ YYR + +YD TN SF S+ WI + K + N ILVGNKCD+
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 139 EDERVISFERGKHLAESLGVEFFETSAK---DNVNVKGVFERL 178
+ + + A++ FETSAK DN +V+ +F L
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K++++GN +VGK+S + RY FT + T+G+DF + + +D+ V+L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
+ IT AYYRGA +L++ T+ ESF +I W ++ D LV NK D+ D+
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDD 124
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180
I E + LA+ L + F+ TS K+++NV VF+ L +
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+FK+++IG+S+VGKT +R+ F +T+G+DF+ + V +R+K+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 81 ERYR-TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDN-AQVILVGNKCDM 138
ER+R ++ YYR + +YD+TN SF S+ WI + K + N ILVGNKCD+
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 139 EDERVISFERGKHLAESLGVEFFETSAK---DNVNVKGVFERL 178
+ + + A++ + FETSAK DN +V+ +F L
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++I+G+S VGKTS + +Y + F++ + +T+G DF K V D+ V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDW----ITQIKTYSWDNAQVILVGNKC 136
ER++++ A+YRGA +L++DVT +F ++ W + Q +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+E+ +V + + +FETSAK+ +NV+ F+ +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 4/162 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++I+G+S VGKTS + +Y + F++ + +T+G DF K V D+ V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDW----ITQIKTYSWDNAQVILVGNKC 136
ER++++ A+YRGA +L++DVT +F ++ W + Q +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
D+E+ +V + + +FETSAK+ +NV+ F+ +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++I+G+S VGKTS + +Y + F++ + +T+G DF K V D+ V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDW----ITQIKTYSWDNAQVILVGNKC 136
ER++++ A+YRGA +L++DVT +F ++ W + Q +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D E+ +V + + +FETSAK+ +NV+ F+ +
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
KL+++G ++VGK+S + R+ + F T+G F + V ++ VK +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED- 140
R+ ++ YYR A +++YDVT +SF + W+ ++ + + + LVGNK D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 141 --ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
ER ++ E G+ LAE G+ FFETSAK NV VF
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++I+G+S VGKTS + +Y + F++ + +T+G DF K V D+ V +QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDW----ITQIKTYSWDNAQVILVGNKC 136
ER++++ A+YRGA +L++DVT +F ++ W + Q +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+E+ +V + + +FETSAK+ +NV+ F+ +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 97/163 (59%), Gaps = 4/163 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+FK++++G+ VGK+S + RY + F S T+G++F K + V +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS----WDNAQVILVGNKC 136
ER+R++ T +YRG+ +L + V + +SF ++ +W + Y+ ++ +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+++ +V + E ++ +FETSAKD+ NV FE V
Sbjct: 131 DIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAV 173
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++++G+ VGK+S + RY + F S T+G++F + + + V LQIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS----WDNAQVILVGNKC 136
ER++++ T +YRGA +L + V + +SF ++ +W + Y+ ++ +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D ED +V + E E+ + ETSAKD+ NV FE V
Sbjct: 127 DKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAV 169
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
QN + K++++G+ VGK++ ++ D F + T ++ K V ++ V++ I
Sbjct: 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDIL 67
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD-NAQVILVGN 134
DTAGQE Y I Y+R GF+ ++ +T ESF + D+ QI D N +LVGN
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSES 189
K D+ED+R +S E K+ AE V + ETSAK NV VF L+ +I KM +S
Sbjct: 128 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+FK++++G+ VGK+S + RY + F + T+G++F K + V +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS----WDNAQVILVGNKC 136
ER+R++ T +YRG+ +L + V + +SF ++ +W + Y+ ++ +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+ + +V + E ++ +FETSAKD NV FE V
Sbjct: 127 DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+FK++++G+ VGK+S + RY + F + T+G++F K + V +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS----WDNAQVILVGNKC 136
ER+R++ T +YRG+ +L + V + +SF ++ +W + Y+ ++ +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+ + +V + E ++ +FETSAKD NV FE V
Sbjct: 129 DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 171
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
QN + K++++G+ VGK++ ++ D F + T ++ K V ++ V++ I
Sbjct: 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDIL 71
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD-NAQVILVGN 134
DTAGQE Y I Y+R GF+ ++ +T ESF + D+ QI D N +LVGN
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSES 189
K D+ED+R +S E K+ AE V + ETSAK NV VF L+ +I KM +S
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
QN + K++++G+ VGK++ ++ D F + T ++ K V ++ V++ I
Sbjct: 1 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDIL 59
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD-NAQVILVGN 134
DTAGQE Y I Y+R GF+ ++ +T ESF + D+ QI D N +LVGN
Sbjct: 60 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSES 189
K D+ED+R +S E K+ AE V + ETSAK NV VF L+ +I KM +S
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
++ + Y + GF L+Y +T + +F +QD QI + D+ +ILVGNKCD+ED
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 141 ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
ERV+ E+G++LA F E+SAK +NV +F LV
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLV 162
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
++ + Y + GF L+Y +T + +F +QD QI + D+ +ILVGNKCD+ED
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 141 ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
ERV+ E+G++LA F E+SAK +NV +F LV
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLV 164
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
QN + K++++G+ VGK++ ++ D F + T ++ K V ++ V++ I
Sbjct: 1 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDIL 59
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD-NAQVILVGN 134
DTAG E Y I Y+R GF+ ++ +T ESF + D+ QI D N +LVGN
Sbjct: 60 DTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSES 189
K D+ED+R +S E K+ AE V + ETSAK NV VF L+ +I KM +S
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
++ + Y + GF L+Y +T + +F +QD QI + ++ +ILVGNKCD+ED
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 141 ERVISFERGKHLAES-LGVEFFETSAKDNVNVKGVFERLV 179
ERV+ E+G++LA F E+SAK +NV +F LV
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
++ + Y + GF L+Y +T + +F +QD QI + ++ +ILVGNKCD+ED
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 141 ERVISFERGKHLAES-LGVEFFETSAKDNVNVKGVFERLV 179
ERV+ E+G++LA F E+SAK +NV +F LV
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 4/172 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++++G+ VGK++ ++ D F + T ++ K V ++ V++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGL 65
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW--DNAQVILVGNKCDM 138
E Y I Y+R GF+L++ +T ESFT+ ++ QI D +++VGNK D+
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSES 189
E+ R + E + AE GV++ ETSAK NV VF L+ +I KMSE+
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 177
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 4/172 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++++G+ VGK++ ++ D F + T ++ K V ++ V++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGL 61
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW--DNAQVILVGNKCDM 138
E Y I Y+R GF+L++ +T ESFT+ ++ QI D +++VGNK D+
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSES 189
E+ R + E + AE GV++ ETSAK NV VF L+ +I KMSE+
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 173
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++++G+ VGK++ ++ D F + T ++ K V ++ V++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 62
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD-NAQVILVGNKCDME 139
E Y I Y+R GF+ ++ +T ESF + D+ QI D N +LVGNK D+E
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
D+R +S E K+ A+ V + ETSAK NV VF
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 32/206 (15%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
MA GE + Q FKL+++G+ GKT+F+ R+ F +V+T+G++
Sbjct: 1 MAAQGEPQVQ-----------FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 49
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK 120
+ +K +WDTAGQE+Y + YY A I+M+DVT+ ++ ++ +W +
Sbjct: 50 LVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL- 108
Query: 121 TYSWDNAQVILVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
+N ++L GNK D++D +V I F R K+L ++++ SAK N N + F
Sbjct: 109 VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFL 162
Query: 177 RLVDIICDKMSESLDSDPNL--VAGP 200
L + L DPNL VA P
Sbjct: 163 WL--------ARKLIGDPNLEFVAMP 180
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 32/206 (15%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
MA GE + Q FKL+++G+ GKT+F+ R+ F +V+T+G++
Sbjct: 1 MAAQGEPQVQ-----------FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 49
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK 120
+ +K +WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W +
Sbjct: 50 LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL- 108
Query: 121 TYSWDNAQVILVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
+N ++L GNK D++D +V I F R K+L ++++ SAK N N + F
Sbjct: 109 VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFL 162
Query: 177 RLVDIICDKMSESLDSDPNL--VAGP 200
L + L DPNL VA P
Sbjct: 163 WL--------ARKLIGDPNLEFVAMP 180
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 21/194 (10%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
AA FKL+++G+ GKT+F+ R+ F +V+T+G++ + +K
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
+WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W + +N ++L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 133 GNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
GNK D++D +V I F R K+L ++++ SAK N N + F L +
Sbjct: 126 GNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWL--------AR 171
Query: 189 SLDSDPNL--VAGP 200
L DPNL VA P
Sbjct: 172 KLIGDPNLEFVAMP 185
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 32/206 (15%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
MA GE + Q FKL+++G+ GKT+F+ R+ F +V+T+G++
Sbjct: 1 MAAQGEPQVQ-----------FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 49
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK 120
+ +K +WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W +
Sbjct: 50 LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL- 108
Query: 121 TYSWDNAQVILVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
+N ++L GNK D++D +V I F R K+L ++++ SAK N N + F
Sbjct: 109 VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFL 162
Query: 177 RLVDIICDKMSESLDSDPNL--VAGP 200
L + L DPNL VA P
Sbjct: 163 WL--------ARKLIGDPNLEFVAMP 180
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 32/206 (15%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
MA GE + Q FKL+++G+ GKT+F+ R+ F +V+T+G++
Sbjct: 1 MAAQGEPQVQ-----------FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 49
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK 120
+ +K +WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W +
Sbjct: 50 LVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL- 108
Query: 121 TYSWDNAQVILVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
+N ++L GNK D++D +V I F R K+L ++++ SAK N N + F
Sbjct: 109 VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFL 162
Query: 177 RLVDIICDKMSESLDSDPNL--VAGP 200
L + L DPNL VA P
Sbjct: 163 WL--------ARKLIGDPNLEFVAMP 180
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 25/187 (13%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR--VKLQIWDTAG 79
FKL+++G+ GKT+F+ R+ F +V+T+G++ V + H R +K +WDTAG
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGPIKFNVWDTAG 61
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
QE++ + YY A I+M+DVT+ ++ ++ +W + +N ++L GNK D++
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 120
Query: 140 DERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPN 195
D +V I F R K+L ++++ SAK N N + F L + L DPN
Sbjct: 121 DRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWL--------ARKLIGDPN 166
Query: 196 L--VAGP 200
L VA P
Sbjct: 167 LEFVAMP 173
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR--V 70
AA FKL+++G+ GKT+F+ R+ F +V+T+G++ V + H R +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGPI 59
Query: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVI 130
K +WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W + +N ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIV 118
Query: 131 LVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
L GNK D++D +V I F R K+L ++++ SAK N N + F L
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWL-------- 164
Query: 187 SESLDSDPNL 196
+ L DPNL
Sbjct: 165 ARKLIGDPNL 174
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 32/206 (15%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
MA GE + Q FKL+++G+ GKT+F+ R+ F +V T+G++
Sbjct: 1 MAAQGEPQVQ-----------FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHP 49
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK 120
+ +K +WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W +
Sbjct: 50 LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL- 108
Query: 121 TYSWDNAQVILVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
+N ++L GNK D++D +V I F R K+L ++++ SAK N N + F
Sbjct: 109 VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFL 162
Query: 177 RLVDIICDKMSESLDSDPNL--VAGP 200
L + L DPNL VA P
Sbjct: 163 WL--------ARKLIGDPNLEFVAMP 180
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR--V 70
AA FKL+++G+ GKT+F+ R+ F +V T+G++ V + H R +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE--VHPLVFHTNRGPI 59
Query: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVI 130
K +WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W + +N ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIV 118
Query: 131 LVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
L GNK D++D +V I F R K+L ++++ SAK N N + F L
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWL-------- 164
Query: 187 SESLDSDPNL 196
+ L DPNL
Sbjct: 165 ARKLIGDPNL 174
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 32/206 (15%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
MA GE + Q FKL+++G+ GKT+F+ R+ F +V+T+G++
Sbjct: 1 MAAQGEPQVQ-----------FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 49
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK 120
+ +K +WDTAGQE++ + YY A I+ +DVT+ ++ ++ +W +
Sbjct: 50 LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL- 108
Query: 121 TYSWDNAQVILVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
+N ++L GNK D++D +V I F R K+L ++++ SAK N N + F
Sbjct: 109 VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFL 162
Query: 177 RLVDIICDKMSESLDSDPNL--VAGP 200
L + L DPNL VA P
Sbjct: 163 WL--------ARKLIGDPNLEFVAXP 180
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 25/196 (12%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR--V 70
AA FKL+++G+ GKT+F+ R+ F +V+T+G++ V + H R +
Sbjct: 4 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGPI 61
Query: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVI 130
K +WDTAG E++ + YY A I+M+DVT+ ++ ++ +W + +N ++
Sbjct: 62 KFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIV 120
Query: 131 LVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
L GNK D++D +V I F R K+L ++++ SAK N N + F L
Sbjct: 121 LCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWL-------- 166
Query: 187 SESLDSDPNL--VAGP 200
+ L DPNL VA P
Sbjct: 167 ARKLIGDPNLEFVAMP 182
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 36/208 (17%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
MA GE + Q FKL+++G+ GKT+F+ R+ F +V+T+G++ V
Sbjct: 1 MAAQGEPQVQ-----------FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--V 47
Query: 61 KTVFRHDKR--VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ 118
+ H R +K +WDTAG E++ + YY A I+M+DVT+ ++ ++ +W
Sbjct: 48 HPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107
Query: 119 IKTYSWDNAQVILVGNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGV 174
+ +N ++L GNK D++D +V I F R K+L ++++ SAK N N +
Sbjct: 108 L-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKP 160
Query: 175 FERLVDIICDKMSESLDSDPNL--VAGP 200
F L + L DPNL VA P
Sbjct: 161 FLWL--------ARKLIGDPNLEFVAMP 180
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 21/194 (10%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
AA FKL+++G+ GKT+F+ R+ +V+T+G++ + +K
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
+WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W + +N ++L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 133 GNKCDMEDERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
GNK D++D +V I F R K+L ++++ SAK N N + F L +
Sbjct: 126 GNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWL--------AR 171
Query: 189 SLDSDPNL--VAGP 200
L DPNL VA P
Sbjct: 172 KLIGDPNLEFVAMP 185
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 25/187 (13%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR--VKLQIWDTAG 79
FKL+++G+ GKT+F+ R+ F +V+T+G++ V + H R +K +WDTAG
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGPIKFNVWDTAG 64
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
E++ + YY A I+M+DVT+ ++ ++ +W + +N ++L GNK D++
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIK 123
Query: 140 DERV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPN 195
D +V I F R K+L ++++ SAK N N + F L + L DPN
Sbjct: 124 DRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWL--------ARKLIGDPN 169
Query: 196 L--VAGP 200
L VA P
Sbjct: 170 LEFVAMP 176
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 14/164 (8%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K+ I+G SVGK+S ++ + F ++ T+ F K + + + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQ-------DWITQIKTYSWDNAQVILVGNK 135
Y Y G+IL+Y VT+ +SF I+ D + +++ ++LVGNK
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI------PIMLVGNK 120
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+ ERVIS+E GK LAES F E+SAK+N VF R++
Sbjct: 121 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 14/174 (8%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
K + +G+ +VGKT L Y ++F + +V TV +F V + V L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGATVNLGLWDTAGQ 66
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDME 139
E Y + YRGA FIL + + ++ S+ ++ + WI ++K Y+ ++LVG K D+
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLR 125
Query: 140 DER----------VISFERGKHLAESLGVE-FFETSAKDNVNVKGVFERLVDII 182
D++ I+ +G+ L + +G + E S+K NVKGVF+ + ++
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 100/191 (52%), Gaps = 13/191 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G+ GKT+F+ R+ F +++T+G++ + + + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
++ + YY A I+M+DVT+ ++ ++ +W + +N ++L GNK D+++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 131
Query: 142 RV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNLV 197
+V I+F R K+L ++++ SAK N N + F L + + P L
Sbjct: 132 KVKAKTITFHRKKNL------QYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL- 184
Query: 198 AGPKGTRLTEQ 208
P ++ EQ
Sbjct: 185 -APPEVQVDEQ 194
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 14/164 (8%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K+ I+G SVGK+S ++ + F ++ T+ F K + + + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQ-------DWITQIKTYSWDNAQVILVGNK 135
Y Y G+IL+Y VT+ +SF I+ D + +++ ++LVGNK
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI------PIMLVGNK 120
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+ ERVIS+E GK LAES F E+SAK+N VF R++
Sbjct: 121 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++I+G VGKTS ++ + F+ + TV + K V L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMEDE 141
Y + ++ G G++L+Y VT+ SF I+ ++ + + V+LVGNK D+ E
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
R + GK LAES G F E+SA++N +G+F +++ I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 14/164 (8%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K+ I+G SVGK+S ++ + F ++ T+ F K + + + LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQ-------DWITQIKTYSWDNAQVILVGNK 135
Y Y G+IL+Y VT+ +SF I+ D + +++ ++LVGNK
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI------PIMLVGNK 115
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+ ERVIS+E GK LAES F E+SAK+N VF R++
Sbjct: 116 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 159
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 14/164 (8%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K+ I+G SVGK+S ++ + F + T+ F K + + + LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQ-------DWITQIKTYSWDNAQVILVGNK 135
Y Y G+IL+Y VT+ +SF I+ D + +++ ++LVGNK
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI------PIMLVGNK 118
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
D+ ERVIS+E GK LAES F E+SAK+N VF R++
Sbjct: 119 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 90/158 (56%), Gaps = 11/158 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G+ GKT+F+ R+ F +++T+G++ + + + +K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
++ + YY A I+M+DVT+ ++ ++ +W + +N ++L GNK D+++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKER 124
Query: 142 RV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
+V I+F R K+L ++++ SAK N N + F
Sbjct: 125 KVKAKTITFHRKKNL------QYYDISAKSNYNFEKPF 156
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 90/158 (56%), Gaps = 11/158 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G+ GKT+F+ R+ F +++T+G++ + + + +K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
++ + YY A I+M+DVT+ ++ ++ +W + +N ++L GNK D+++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKER 123
Query: 142 RV----ISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
+V I+F R K+L ++++ SAK N N + F
Sbjct: 124 KVKAKTITFHRKKNL------QYYDISAKSNYNFEKPF 155
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 4/161 (2%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FRHDKRVKLQIWDTAGQ 80
K++++G+ + GKTS +A ++F + T+G+DF ++ + + V LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ---VILVGNKCD 137
+ Y GA G +L+YD+TN +SF +++DW T +K S ++ V LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
+E R I E+ + G SAK +V F+++
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKV 167
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 14/173 (8%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K + +G+ +VGKT L Y ++F + +V TV +F V + V L +WDTAGQE
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNT-VNLGLWDTAGQE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED 140
Y + YRGA FIL + + ++ S+ ++ + WI +++ Y+ +ILVG K D+ D
Sbjct: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
Query: 141 ER----------VISFERGKHLAESLGVE-FFETSAKDNVNVKGVFERLVDII 182
++ I+ +G+ L + +G + E S+K NVK VF+ + ++
Sbjct: 125 DKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVV 177
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 40/196 (20%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDF----------------------- 58
+K +++G SSVGK+S + R D+F +T+G F
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 59 --------KVKTVFRHDK------RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVT 104
V +H+ +K IWDTAGQERY +I YYRGA I+++D++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 105 NEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETS 164
N + + W+ Q+K S N +ILV NK D +V E K+ A+ + F +TS
Sbjct: 128 NSNTLDRAKTWVNQLKISS--NYIIILVANKIDKNKFQVDILEVQKY-AQDNNLLFIQTS 184
Query: 165 AKDNVNVKGVFERLVD 180
AK N+K +F L +
Sbjct: 185 AKTGTNIKNIFYMLAE 200
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K + +G+ +VGKT L Y ++F + +V TV +F V V L +WDTAGQE
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED 140
Y + YRGA F+L + + ++ S+ +I + W+ ++K Y+ ++LVG K D+ D
Sbjct: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRD 124
Query: 141 ER----------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDI 181
++ I+ +G+ L + +G V + E S+K NVK VF+ + +
Sbjct: 125 DKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRV 176
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K + +G+ +VGKT L Y + F + ++ TV +F V + V L +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED 140
Y + YRGA F+L + + ++ S+ ++ + W+ +++ ++ N ++LVG K D+ D
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 141 ER--------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
++ VI+ +G+ L + +G + E S+K NVK VF+ + ++
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG-IDFKVKTVFRHDKRVKLQIWDTAGQ 80
+K+ +IG+ VGKT+++ R D F + +TVG ++ V + +K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140
E+ + YY GA G IL +DVT+ + ++ W+ + + + A +++ NK D+++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNL 196
+ IS + + + E+FE SAK N F L I + S+ NL
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNL 187
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 16/176 (9%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
M K +++G+ +VGKT L YA+D+F +V TV D +V K+ L ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDME 139
E Y + Y F++ + V N SF ++ ++W+ ++K Y+ N +L+G + D+
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 140 D------------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFERLVDII 182
D E+ I E+G+ LA+ +G + E SA +K VF+ + I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK ++ ++LVGNKCD+
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + ++ + LA S G+ F ETSAK V F LV
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 16/173 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++++G+ GKTS L +AD +F ++ TV + V + K V L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVK-GKPVHLHIWDTAGQDD 94
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMEDE 141
Y + +Y A +L +DVT+ SF +I W ++ + +I+VG K D+ +
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153
Query: 142 R------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDI 181
+ +++ RG+ +A S+G V + E SA+ + NV VF+ ++
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK ++ ++LVGNK D+
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + ++ + LA S G+ F ETSAK V F LV
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L+++G VGK++ ++ F + + T+ + + V D+ +L I DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVI-DDRAARLDILDTAGQE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
+ + Y R GF+L++ VT+ SF I + QI + D +IL+GNK D++
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+R ++ E G+ LA L V + E SAK +NV F LV +I
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV-KLQIWDTAGQ 80
+++ + G VGK+S + R+ +F +++ TV ++ V DK + LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR--QVISCDKSICTLQITDTTGS 61
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD--NAQVILVGNKCDM 138
++ + FIL+Y +T+ +S ++ QI D + ++LVGNKCD
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181
R + + LA + F ETSAK N NVK +F+ L+++
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL 164
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+N K++++G+ +VGKT L ++ +A+V TV +F +++++ + L +W
Sbjct: 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLW 76
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGN 134
DTAGQE Y + Y + +L + V N SF +I W +IK Y D A+ +LVG
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGL 135
Query: 135 KCDMEDERV--ISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
K D+ + ++ + G L + LG V + E S+ + + VFE+ VD I
Sbjct: 136 KVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+N K++++G+ +VGKT L ++ +A+V TV +F +++++ + L +W
Sbjct: 17 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLW 75
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGN 134
DTAGQE Y + Y + +L + V N SF +I W +IK Y D A+ +LVG
Sbjct: 76 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGL 134
Query: 135 KCDMEDERV--ISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
K D+ + ++ + G L + LG V + E S+ + + VFE+ VD I
Sbjct: 135 KVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 185
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G +A+ +G V++ E SA +K VF E + ++C
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQ 128
+L I DTAGQE + + Y R GF+L++ + + +SF + TQI + D+
Sbjct: 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP 116
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
V+LVGNK D+E +R + S V +FE SAK +NV FE+LV
Sbjct: 117 VVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G +A+ +G V++ E SA +K VF E + ++C
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 128
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 148
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F+ ++ TV D V K V L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 72
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 131
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 125
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 126
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 81
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 140
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 126
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 126
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 127
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 125
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 3 GVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT 62
GV K + D+ + K +++G+ +VGKT L Y ++F ++ TV D
Sbjct: 137 GVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSAN 195
Query: 63 VFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKT 121
V K V L +WDTAG E Y + Y F++ + + + SF ++ W +++
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR- 254
Query: 122 YSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLG-VEFFETSAKDN 168
+ N +ILVG K D+ D++ I++ +G +A+ +G V++ E SA
Sbjct: 255 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 169 VNVKGVF-ERLVDIIC 183
+K VF E + ++C
Sbjct: 315 RGLKTVFDEAIRAVLC 330
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F F T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 3 GVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT 62
GV K + D+ + K +++G+ +VGKT L Y ++F ++ TV D
Sbjct: 137 GVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSAN 195
Query: 63 VFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKT 121
V K V L +WDTAG E Y + Y F++ + + + SF ++ W +++
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR- 254
Query: 122 YSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLG-VEFFETSAKDN 168
+ N +ILVG K D+ D++ I++ +G +A+ +G V++ E SA
Sbjct: 255 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 169 VNVKGVF-ERLVDIIC 183
+K VF E + ++C
Sbjct: 315 RGLKTVFDEAIRAVLC 330
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 3 GVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT 62
GV K + D+ + K +++G+ +VGKT L Y ++F ++ TV D
Sbjct: 137 GVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSAN 195
Query: 63 VFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKT 121
V K V L +WDTAG E Y + Y F++ + + + SF ++ W +++
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR- 254
Query: 122 YSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLG-VEFFETSAKDN 168
+ N +ILVG K D+ D++ I++ +G +A+ +G V++ E SA
Sbjct: 255 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 169 VNVKGVF-ERLVDIIC 183
+K VF E + ++C
Sbjct: 315 RGLKTVFDEAIRAVLC 330
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G +A+ +G V++ E SA +K VF E + ++C
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 19/152 (12%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH-----DKRVKLQIWDT 77
KL I G + VGK++ + R+ F + D +++ +RH D+ V ++I DT
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEY------DPTLESTYRHQATIDDEVVSMEILDT 83
Query: 78 AGQERYRTIT-TAYYRGAMGFILMYDVTNEESFTSI---QDWITQIKTYSWDNAQVILVG 133
AGQE TI + R GF+L+YD+T+ SF + ++ + +IK N +ILVG
Sbjct: 84 AGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVG 139
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSA 165
NK D++ R +S E G+ LA L F+E SA
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSA 171
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y ++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 123
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G +A+ +G V++ E SA +K VF E + ++C
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G +A+ +G V++ E SA +K VF E + ++C
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y ++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G +A+ +G V++ E SA +K VF E + ++C
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP- 139
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + ++ LA+S G+ F ETSAK V+ F LV
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y ++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G +A+ +G V++ E SA +K VF E + ++C
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L + D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L + D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 122
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGK L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 128
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y ++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 125
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G +A+ +G V++ E SA +K VF E + ++C
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 182
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++ ++ TV D V K V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 148
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L + D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L + D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 122
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L + D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 128
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 167
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 34 KTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRG 93
K++ ++ +F + T+ DF K + L+I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 94 AMGFILMYDVTNEESFTSIQ---DWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGK 150
GFIL+Y + N++SF I+ D I ++K Y + VILVGNK D+E ER +S G+
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY--EKVPVILVGNKVDLESEREVSSSEGR 132
Query: 151 HLAESLGVEFFETSAKDNVNVKGVFERLV 179
LAE G F ETSAK V +F +V
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 124
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK + + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + ++ ++ K V + L I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 127
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 166
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + S+ +++ W +++ + + +ILVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESL-GVEFFETSAKDNVNVKGVF-ERLVDIICDK 185
++ I++ +G LA+ + V++ E SA +K VF E + ++C +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 148
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A+ +G V++ E SA +K VF+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ + + K+V+L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDM-ED 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD 144
Query: 141 ERV-----------ISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
E + E G+ +A + + E SAK V+ VFE
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F + +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDE 141
Y Y ++ + + + +S +I + W ++K + N +ILVGNK D+ ++
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Query: 142 RVISFE------------RGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ E G+ +A +G + E SAK V+ VFE
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGN+CD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + + ++LVG K D+ D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRD 122
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A +G V++ E SA +K VF+ +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + + ++LVG K D+ D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRD 122
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A +G V++ E SA +K VF+ +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + ++ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + + ++LVG K D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRD 121
Query: 141 ER------------VISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
++ I++ +G +A +G V++ E SA +K VF+ +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 173
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L ++ D F +V TV ++ + + K+V+L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDM-ED 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFX-PNVPIILVGNKKDLRQD 144
Query: 141 ERV-----------ISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
E + E G+ +A + + E SAK V+ VFE
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + S+ +++ W +++ + + +ILVG K D+ D
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDLRD 127
Query: 141 ER------------VISFERGKHLAESL-GVEFFETSAKDNVNVKGVF-ERLVDIIC 183
++ I++ +G LA+ + V++ E SA +K VF E + ++C
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC 184
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+++G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMEDE 141
Y + Y ++ + V + +S +I + W+ ++K + N +ILV NK D+ +
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144
Query: 142 RVISFERGKHLAESL-------------GVEFFETSAKDNVNVKGVFE 176
+ E + E + ++ E SAK V+ VFE
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L + F +V TV ++ V V +RV+L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDM--- 138
Y + Y + ++ + + +S ++Q+ WI ++ + +ILVG K D+
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-QGVPIILVGCKVDLRND 129
Query: 139 ---------EDERVISFERGKHLAESLGVE-FFETSAKDNVNVKGVFE 176
E ++ ++ + G+ +A+ +G ++E SAK V+ VFE
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L + D F +V TV ++ + + K+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDM-ED 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD 124
Query: 141 ERV-----------ISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
E + E G+ +A + + E SAK V+ VFE
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ + V + + L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXL-LDILDTAGGE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+I+G+ + GKT L + D F +V TV ++ V + K+V+L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D+ +
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 127
Query: 141 -----------ERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176
+ + E G+ +A +G + E SAK V+ VFE
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 82 RYRTITTAYYRGAMG-------------------FILMYDVTNEESFTSIQ-DWITQIKT 121
Y + Y +G F++ + + + SF +++ W +++
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR- 123
Query: 122 YSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLG-VEFFETSAKDN 168
+ N +ILVG K D+ D++ I++ +G +A+ +G V++ E SA
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 169 VNVKGVF-ERLVDIIC 183
+K VF E + ++C
Sbjct: 184 RGLKTVFDEAIRAVLC 199
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + S+ +++ W +++ + + +ILVG K D+ D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDLRD 128
Query: 141 ER------------VISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I++ +G LA+ + V++ E SA +K VF+ +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
A Q KL+++G+ GKT+ L A D + +V TV ++ + ++RV+L
Sbjct: 3 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 61
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILV 132
+WDT+G Y + Y + +L +D++ E+ ++++ W T+I Y + +V+L+
Sbjct: 62 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLI 120
Query: 133 GNKCDM------------EDERVISFERGKHLAESLGVE-FFETSA-KDNVNVKGVFERL 178
G K D+ + + IS+E+G +A+ LG E + E SA ++ +F R
Sbjct: 121 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF-RT 179
Query: 179 VDIIC 183
++C
Sbjct: 180 ASMLC 184
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
A Q KL+++G+ GKT+ L A D + +V TV ++ + ++RV+L
Sbjct: 4 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 62
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILV 132
+WDT+G Y + Y + +L +D++ E+ ++++ W T+I Y + +V+L+
Sbjct: 63 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLI 121
Query: 133 GNKCDM------------EDERVISFERGKHLAESLGVE-FFETSA-KDNVNVKGVFERL 178
G K D+ + + IS+E+G +A+ LG E + E SA ++ +F R
Sbjct: 122 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF-RT 180
Query: 179 VDIIC 183
++C
Sbjct: 181 ASMLC 185
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK ++ ++LVGNKCD+
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 139
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + ++ + LA S G+ F ETSAK V F LV
Sbjct: 140 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 178
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
A Q KL+++G+ GKT+ L A D + +V TV ++ + ++RV+L
Sbjct: 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILV 132
+WDT+G Y + Y + +L +D++ E+ ++++ W T+I Y + +V+L+
Sbjct: 79 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLI 137
Query: 133 GNKCDM------------EDERVISFERGKHLAESLGVE-FFETSA-KDNVNVKGVFERL 178
G K D+ + + IS+E+G +A+ LG E + E SA ++ +F R
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF-RT 196
Query: 179 VDIIC 183
++C
Sbjct: 197 ASMLC 201
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR-VKLQIWDTAGQE 81
K +++G+ +VGKTS + Y + + + ++ T +F V D R V+LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS--AVVSVDGRPVRLQLCDTAGQD 79
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
+ + Y F+L + V + SF ++ + W+ +I+ + A +ILVG + D+ +
Sbjct: 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDLRE 138
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
E+ + E K LAE + + E SA N+K VF+ +
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
+ Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 123
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 18/190 (9%)
Query: 34 KTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV-KLQIWDTAGQERYRTITTAYYR 92
K+S + R+ +F ++ T+ ++ V DK V LQI DT G ++ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR--QVISCDKSVCTLQITDTTGSHQFPAMQRLSIS 78
Query: 93 GAMGFILMYDVTNEESFTS---IQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERG 149
FIL++ VT+++S I I QIK S ++ V+LVGNKCD E +R +
Sbjct: 79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKG-SVEDIPVMLVGNKCD-ETQREVDTREA 136
Query: 150 KHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNLVAGPKGTRLTEQP 209
+ +A+ F ETSAK N NVK +F+ L+ +L++ N+ G R +Q
Sbjct: 137 QAVAQEWKCAFMETSAKMNYNVKELFQELL---------TLETRRNMSLNIDGKRSGKQ- 186
Query: 210 QRNNPINPNC 219
+R + + C
Sbjct: 187 KRTDRVKGKC 196
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 131
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 124
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 122
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 124
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 128
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 93/182 (51%), Gaps = 19/182 (10%)
Query: 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-KR 69
K D N + K++++G+S GKT+ L +A D F +V TV ++ F D +R
Sbjct: 13 KSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS--FEIDTQR 70
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQ 128
++L +WDT+G Y + Y + ++ +D++ E+ S+ + W +I+ + N +
Sbjct: 71 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTK 129
Query: 129 VILVGNKCDM------------EDERVISFERGKHLAESLGVE-FFETSAKDNVN-VKGV 174
++LVG K D+ + +S+++G ++A+ +G + E SA + N V+ +
Sbjct: 130 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 189
Query: 175 FE 176
F
Sbjct: 190 FH 191
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 125
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNK D+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 123
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 92/178 (51%), Gaps = 19/178 (10%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-KRVKLQ 73
D N + K++++G+S GKT+ L +A D F +V TV ++ F D +R++L
Sbjct: 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS--FEIDTQRIELS 79
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILV 132
+WDT+G Y + Y + ++ +D++ E+ S+ + W +I+ + N +++LV
Sbjct: 80 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLV 138
Query: 133 GNKCDM------------EDERVISFERGKHLAESLGVE-FFETSAKDNVN-VKGVFE 176
G K D+ + +S+++G ++A+ +G + E SA + N V+ +F
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 196
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK ++ ++LVGNK D+
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + ++ + LA S G+ F ETSAK V F LV
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK ++ ++LVGNK D+
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + ++ + LA S G+ F ETSAK V F LV
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVI 130
L I DTAGQE Y + Y R GF+ ++ + N +SF I + QIK D+ ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
LVGNK D+ R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 113 LVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGK L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 128
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V V ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + S +V TV ++ V TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + V + SF ++++ W+ +I T+ +LVG + D+ D
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 125
Query: 141 ------------ERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLV 179
++ I+ E + LA L V++ E SA +K VF+ +
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-KRVKLQIWDTAGQE 81
K++++G+S GKT+ L +A D F +V TV ++ F D +R++L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS--FEIDTQRIELSLWDTSGSP 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDM-- 138
Y + Y + ++ +D++ E+ S+ + W +I+ + N +++LVG K D+
Sbjct: 67 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 125
Query: 139 ----------EDERVISFERGKHLAESLGVE-FFETSAKDNVN-VKGVFE 176
+ +S+++G ++A+ +G + E SA + N V+ +F
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNK D+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNK D+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
R + + + LA S G+ + ETSAK V+ F LV
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVI 130
L + DTAGQE + + Y R GF+++Y VT++ SF + + I + ++ +I
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD-NVNVKGVFERLVDII 182
LV NK D+ R ++ ++GK +A + + ETSAKD +NV F LV +I
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSI---QDWITQIKTYSWDNAQ 128
L + DTAGQE + + Y R GF+++Y VT++ SF + I ++K ++
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK--DRESFP 120
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD-NVNVKGVFERLVDII 182
+ILV NK D+ R ++ ++GK +A + + ETSAKD +NV F LV +I
Sbjct: 121 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVI 130
L + DTAGQE + + Y R GF+++Y VT++ SF + + I + ++ +I
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD-NVNVKGVFERLVDII 182
LV NK D+ R ++ ++GK +A + + ETSAKD +NV F LV +I
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVI 130
L + DTAGQE + + Y R GF+++Y VT++ SF + + I + ++ +I
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD-NVNVKGVFERLVDII 182
LV NK D+ R ++ ++GK +A + + ETSAKD +NV F LV +I
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL---QIW 75
D +FK++++G S VGK++ + SA D + + + V L IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 76 ---DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVIL 131
D G R + T F++++ VT+ SF+ + + + +++ + VIL
Sbjct: 81 EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
VGNK D+ R +S E G+HLA +L + ETSA + N + +FE V I
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 23 KLLIIGNSSVGKTSF--LFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW--DTA 78
K+ ++G ++VGK++ +F F + T G++ V V D V ++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDN---AQVILVGNK 135
G + Y+ + Y+ G IL++DV++ ESF S + W +K+ D + +LV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 136 CDMEDER-VISFERGKHLAESLGVEFFETSA 165
D+ +R + + + A + ++FF+ SA
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL---QIW 75
D +FK++++G S VGK++ + +A D + + + V L IW
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 76 ---DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVIL 131
D G + + T F++++ VT+ SF+ + + + +++ + VIL
Sbjct: 70 EQGDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 124
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
VGNK D+ R +S E G+HLA +L + ETSA + N + +FE V
Sbjct: 125 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 172
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL---QIW-- 75
+FK++++G S VGK++ + A D + + + V L IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 76 -DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILVG 133
D G + + T F++++ VT+ SF+ + + + +++ + VILVG
Sbjct: 62 GDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
NK D+ R +S E G+HLA +L + ETSA + N + +FE
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 159
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+++++++G+ VGKTS +A +G D +T+ + L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 81 ERYRTI--TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCD 137
E+ + +G ++++Y + + SF S + Q++ T+ D+ +ILVGNK D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
+ R +S E G+ A +F ETSA NV +FE
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 21 MFKLLIIGNSSVGKTSF--LFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
++K+L++G VGK++ +F +D + G + +++ + L ++D
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEA---EAAGHTYD-RSIVVDGEEASLMVYDIW 62
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCD 137
Q+ R + ++++Y VT++ SF + Q++ D+ +ILVGNK D
Sbjct: 63 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 122
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
+ R +S + G+ A +F ETSA + NV+ +FE +V
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 164
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 21 MFKLLIIGNSSVGKTSF--LFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
++K+L++G VGK++ +F +D + G + +++ + L ++D
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEA---EAAGHTYD-RSIVVDGEEASLMVYDIW 62
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCD 137
Q+ R + ++++Y VT++ SF + Q++ D+ +ILVGNK D
Sbjct: 63 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 122
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
+ R +S + G+ A +F ETSA + NV+ +FE +V
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 164
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 21 MFKLLIIGNSSVGKTSF--LFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
++K+L++G VGK++ +F +D + G + +++ + L ++D
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA---EAAGHTYD-RSIVVDGEEASLMVYDIW 57
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCD 137
Q+ R + ++++Y VT++ SF + Q++ D+ +ILVGNK D
Sbjct: 58 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 117
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
+ R +S + G+ A +F ETSA + NV+ +FE +V
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 22 FKLLIIGNSSVGKTSF--LFRYADDSFTS--------AFVSTVGIDFKVKTVFRHDKRVK 71
+++++IG VGK++ +F DS S + T+ +D + T+ +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI------IL 60
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVI 130
L +W+ G+ + + + ++++Y +T+ SF + Q++ ++ +I
Sbjct: 61 LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
LVGNK D+ R +S G+ A +F ETSA NVK +FE +V
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIV 167
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G GKT+F+ A F+ + TVG F ++ V + + V ++IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKIWDIGGQP 78
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDMED 140
R+R++ Y RG + M D + E + ++ + + V+++GNK D+ +
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 22 FKLLIIGNSSVGKTSF--LFRYADDSFTS--------AFVSTVGIDFKVKTVFRHDKRVK 71
+++++IG VGK++ +F DS S + T+ +D + T+ +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------IL 60
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVI 130
L +W+ G+ + + + ++++Y +T+ SF + Q++ ++ +I
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
LVGNK D+ R +S G+ A +F ETSA NVK +FE +V
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 167
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 22 FKLLIIGNSSVGKTSF--LFRYADDSFTS--------AFVSTVGIDFKVKTVFRHDKRVK 71
+++++IG VGK++ +F DS S + T+ +D + T+ +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI------IL 60
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVI 130
L +W+ G+ + + + ++++Y +T+ SF + Q++ ++ +I
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
LVGNK D+ R +S G+ A +F ETSA NVK +FE +V
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 22 FKLLIIGNSSVGKTSF--LFRYADDSFTS--------AFVSTVGIDFKVKTVFRHDKRVK 71
+++++IG VGK++ +F DS S + T+ +D + T+ +
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------IL 91
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVI 130
L +W+ G+ + + + ++++Y +T+ SF + Q++ ++ +I
Sbjct: 92 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
LVGNK D+ R +S G+ A +F ETSA NVK +FE +V
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 23 KLLIIGNSSVGKTSFL--FRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVK---LQIWDT 77
KL I+GN+ GKT+ L S +TVGID K + DKR + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEES-FTSIQDWITQIKTYSWDNAQVILVGNKC 136
AG+E + + + ++ +YD++ ++ + + W+ IK + ++ VILVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARA-SSSPVILVGTHL 120
Query: 137 DMEDER 142
D+ DE+
Sbjct: 121 DVSDEK 126
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++L++G + GKT+ L++ S T+ + TVG F V+TV K VK +WD GQ
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGQ 376
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDME 139
++ R + YY G G I + D + + + + + I +A +++ NK D+
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436
Query: 140 D 140
D
Sbjct: 437 D 437
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 23 KLLIIGNSSVGKTSFL--FRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVK---LQIWDT 77
KL I+GN+ GKT+ L S +TVGID K + DKR + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEES-FTSIQDWITQIKTYSWDNAQVILVGNKC 136
AG+E + + + ++ +YD++ ++ + + W+ IK + ++ VILVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARA-SSSPVILVGTHL 122
Query: 137 DMEDER 142
D+ DE+
Sbjct: 123 DVSDEK 128
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G GKT+F+ A F + TVG F ++ + + + +KL WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDM 138
R+R++ Y RG + M D ++E + ++ + + V+++GNK D+
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G GKT+F+ A F + TVG F ++ + + + +KL WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDM 138
R+R++ Y RG + M D ++E + ++ + + V+++GNK D+
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNICFTVWDVGGQD 72
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMED 140
R R + Y++ G I + D + E + D + ++ +A ++L NK D+ +
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
IS K +SL + A G++E L D + +++S+
Sbjct: 133 AMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGL-DWLSNELSK 179
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++L++G + GKT+ L++ S T+ + TVG F V+TV K VK +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGQ 54
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDME 139
++ R + YY G G I + D + + + + + I +A +++ NK D+
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 114
Query: 140 D 140
D
Sbjct: 115 D 115
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++L++G + GKT+ L++ S T+ + TVG F V+TV K VK +WD GQ
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGQ 66
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDME 139
++ R + YY G G I + D + + + + + I +A +++ NK D+
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126
Query: 140 D 140
D
Sbjct: 127 D 127
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++L++G + GKT+ L++ S T+ + TVG F V+TV K VK +WD GQ
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGQ 67
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDME 139
++ R + YY G G I + D + + + + + I +A +++ NK D+
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 140 D 140
D
Sbjct: 128 D 128
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++L++G + GKT+ L++ S T+ + TVG F V+TV K VK +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGQ 54
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDME 139
++ R + YY G G I + D + + + + + I +A +++ NK D+
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 114
Query: 140 D 140
D
Sbjct: 115 D 115
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++LI+G GKT+ L+R + + T+G F V+TV K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETV--TYKNLKFQVWDLGGQT 57
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILVGNKCDMED 140
R YY I + D + + S + + ++ A +++ NK DME
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117
Query: 141 ERVISFERGKHLAESLGV--------EFFETSAKDNVNVKGVFERLVDII 182
S +A +LG+ + F+TSA + E LV+ +
Sbjct: 118 AMTPS-----EMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 162
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 23 KLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L +G + GKT+ L++ S T+ + TVG F V+TV K VK +WD GQ+
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGQD 55
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDMED 140
+ R + YY G G I + D + + + + + I +A +++ NK D+ D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++L++G + GKT+ L++ S T+ + TVG F V+TV K VK +WD G
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGL 56
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDME 139
++ R + YY G G I + D + + + + + I +A +++ NK D+
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 116
Query: 140 D 140
D
Sbjct: 117 D 117
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++L++G + GKT+ L++ S T+ + TVG F V+TV K VK +WD G
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGL 57
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDME 139
++ R + YY G G I + D + + + + + I +A +++ NK D+
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 117
Query: 140 D 140
D
Sbjct: 118 D 118
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++L++G + GKT+ L++ S T+ + TVG F V+TV K VK +WD G
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGL 67
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDME 139
++ R + YY G G I + D + + + + + I +A +++ NK D+
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 140 D 140
D
Sbjct: 128 D 128
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83
L I+G GK++ ++ F S + + + + H V L++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQP-VHLRVMDTADLDTP 82
Query: 84 RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVI---LVGNKCDMED 140
R Y A F+++Y V + +SF S ++ + ++ + + I L+GNK DM
Sbjct: 83 RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 141 ERVISFERGKHLAESLGVEFFETSA-KDNVNVKGVFERLV 179
R ++ G LA G FFE SA D +V+ VF V
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNICFTVWDVGGQD 84
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDMED 140
+ R + Y++ G I + D + E D + + ++ +A +++ NK DM +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 141 ERVISFERGKHLAESLGVEFFET 163
+S L + LG++ +
Sbjct: 145 AMPVS-----ELTDKLGLQHLRS 162
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++LI+G GKT+ L+R + + T+G F V+TV K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILVGNKCDMED 140
R YY I + D + + S + + ++ A +++ NK DME
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 119
Query: 141 ERVISFERGKHLAESLGV--------EFFETSAKDNVNVKGVFERLVDII 182
S +A SLG+ + F+TSA + E LV+ +
Sbjct: 120 AMTSS-----EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 164
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKTS L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 72
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILVGNKCDMED 140
+ R + YY+ I + D + + + ++ + + NA +++ NK D+
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 141 ERVISFERGKHLAESLGVE-------FFETSAKDNVNVKGVFERLVDIICDKM 186
IS + E LG++ + +TS N + G++E L D + D +
Sbjct: 133 AMSIS-----EVTEKLGLQTIKNRKWYCQTSCATNGD--GLYEGL-DWLADNL 177
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETV--QYKNISFTVWDVGGQD 55
Query: 82 RYRTITTAYYRGAMGFILMYD 102
R R++ YYR G I + D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVD 76
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETV--QYKNISFTVWDVGGQD 72
Query: 82 RYRTITTAYYRGAMGFILMYD 102
R R++ YYR G I + D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVID 93
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETV--QYKNISFTVWDVGGQD 72
Query: 82 RYRTITTAYYRGAMGFILMYD 102
R R++ YYR G I + D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVD 93
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 220
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
+ R + Y++ G I + D + E ++ + ++ V+LV NK D+ +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 72
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
+ R + Y++ G I + D + E ++ + ++ V+LV NK D+ +
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 55
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
+ R + Y++ G I + D + E ++ + ++ V+LV NK D+ +
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 71
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
+ R + Y++ G I + D + E ++ + ++ V+LV NK D+ +
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV FR+ + +WD GQ+
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIG--FNVETVEFRN---ISFTVWDVGGQD 72
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDM 138
+ R + YY G I + D + E ++ + + I +A +++ NK D+
Sbjct: 73 KIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 75
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
+ R + Y++ G I + D + + +D + ++ V+LV NK D+ +
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 135
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++LI+G GKT+ L+R + I F V+T+ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRL---QIGEVVTTKPTIGFNVETL--SYKNLKLNVWDLGGQT 73
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILVGNKCD 137
R YY I + D T+++ T+ ++ ++ +A +++ NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + T+G F V+TV K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGLD 57
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
+ R + Y++ G I + D + E ++ + ++ V+LV NK D+ +
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+LL++G + GKT+ L ++ + + T+G F +KT+ + KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDT-ISPTLG--FNIKTL--EHRGFKLNIWDVGGQK 71
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ 113
R+ Y+ G I + D + + Q
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ 103
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+LL++G + GKT+ L ++ + + T+G F +KT+ + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTL--EHRGFKLNIWDVGGQK 73
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ 113
R+ Y+ G I + D + + Q
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ 105
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+LL++G + GKT+ L ++ + + T+G F +KT+ + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTL--EHRGFKLNIWDVGGQK 73
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQ 113
R+ Y+ G I + D + + Q
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ 105
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV 70
K A DQ ++L++G + GKT+ L + A + S T G F +K+V +
Sbjct: 11 KSAPDQEV----RILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSV--QSQGF 61
Query: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESF 109
KL +WD GQ + R +Y+ I + D + + F
Sbjct: 62 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV 70
K A DQ ++L++G + GKT+ L + A + S T G F +K+V +
Sbjct: 10 KSAPDQEV----RILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSV--QSQGF 60
Query: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESF 109
KL +WD GQ + R +Y+ I + D + + F
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++I+G + GKT+ L+++ + T+G + + V K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDME 139
R+ YY IL+ D + E ++ + ++ + A V++ NK DM+
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMK 130
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 30/169 (17%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSF---------TSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
KL+ +G + GKT+ L DD TS ++ G+ F
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------------- 83
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILV 132
+D G E+ R + Y G + + D + + + + T + N ++++
Sbjct: 84 -FDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILIL 142
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181
GNK D D IS E+ L E G+ + +T+ K NV +K + R +++
Sbjct: 143 GNKIDRTD--AISEEK---LREIFGL-YGQTTGKGNVTLKELNARPMEV 185
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G GKT+ L++ + + T+G F V+ V + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVECV--QYCNISFTVWDVGGQD 72
Query: 82 RYRTITTAYYRGAMGFILMYD 102
R R++ YY G I + D
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVD 93
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 19/169 (11%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
++LI+G GKT+ L+R + + T+G F V+TV K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R YY I + D + + S + + ++ A +++ NK D E
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQA 123
Query: 142 RVISFERGKHLAESLGV--------EFFETSAKDNVNVKGVFERLVDII 182
S A SLG+ + F+TSA + E LV+ +
Sbjct: 124 XTSS-----EXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETL 167
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
++L++G + GKT+ L + A + S T G F +K+V + KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSV--QSQGFKLNVWDIGGQRK 60
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESF 109
R +Y+ I + D + + F
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++I+G + GKT+ L+++ S ++ I V+ + ++ R +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVINNTR--FLMWDIGGQES 77
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
R+ YY I++ D T+ E + ++ + ++ + A +++ NK D+++
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++I+G + GKT+ L+++ S ++ I V+ + ++ R +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVINNTR--FLMWDIGGQES 78
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
R+ YY I++ D T+ E + ++ + ++ + A +++ NK D+++
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 137
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 11/159 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ I+GN S GK++ + RY ++ S G FK K + + L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQE-ESPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNK--CDM 138
+ A + A+ F+ + + +E SF ++ ++ ++ ++ + ++LVG +
Sbjct: 79 E---LQFAAWVDAVVFV--FSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 139 EDERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176
+ RVI R + L+ L ++ET A +NV+ VF+
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 30/169 (17%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSF---------TSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
KL+ +G + GKT+ L DD TS ++ G+ F
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------------- 70
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILV 132
+D G + R + Y G + + D + E ++ + + T + N ++++
Sbjct: 71 -FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 129
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181
GNK D + IS ER L E G+ + +T+ K +V++K + R +++
Sbjct: 130 GNKIDRPE--AISEER---LREMFGL-YGQTTGKGSVSLKELNARPLEV 172
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++I+G + GKT+ L+++ S ++ I V+ + ++ R +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVINNTR--FLMWDIGGQES 72
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
R+ YY I++ D T+ E + ++ + ++ + A +++ NK D+++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++I+G + GKT+ L+++ S ++ I V+ + ++ R +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVINNTR--FLMWDIGGQES 72
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
R+ YY I++ D T+ E + ++ + ++ + A +++ NK D+++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 30/169 (17%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSF---------TSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
KL+ +G + GKT+ L DD TS ++ G+ F
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------------- 73
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILV 132
+D G + R + Y G + + D + E ++ + + T + N ++++
Sbjct: 74 -FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 132
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181
GNK D + IS ER L E G+ + +T+ K +V++K + R +++
Sbjct: 133 GNKIDRPE--AISEER---LREMFGL-YGQTTGKGSVSLKELNARPLEV 175
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 30/169 (17%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSF---------TSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
KL+ +G + GKT+ L DD TS ++ G+ F
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------------- 64
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILV 132
+D G + R + Y G + + D + E ++ + + T + N ++++
Sbjct: 65 -FDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 123
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181
GNK D + IS ER L E G+ + +T+ K +V++K + R +++
Sbjct: 124 GNKIDRPE--AISEER---LREMFGL-YGQTTGKGSVSLKELNARPLEV 166
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-----FRHDKRVK---LQ 73
K+ +IG+ GKTS L + ++F T G++ K +D +K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
WD GQE + + ++L+ D + ++ W+ I+ Y + VI+V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVM 157
Query: 134 NKCD 137
NK D
Sbjct: 158 NKID 161
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
++L++G + GKT+ L + A + S T G F +K+V + KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSV--QSQGFKLNVWDIGGLRK 60
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESF 109
R +Y+ I + D + + F
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 31 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAY 90
+ GKT+ L ++ + + T+G F +KT+ + KL IWD GQ+ R+ Y
Sbjct: 28 NAGKTTILKKFNGEDVDT-ISPTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRSYWRNY 82
Query: 91 YRGAMGFILMYDVTNEESFTSIQ 113
+ G I + D + + Q
Sbjct: 83 FESTDGLIWVVDSADRQRXQDCQ 105
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+++V KCD ER I L++ ++ ETSA+ NVNV F LV +I
Sbjct: 201 IVVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|2AXV|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AXV|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AXV|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AXV|D Chain D, Structure Of Prgx Y153c Mutant
Length = 317
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
D R IS E +E LGV FFE + +N K V E
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSVNE 74
>pdb|2AW6|A Chain A, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2AW6|B Chain B, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2GRL|A Chain A, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|B Chain B, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|C Chain C, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|D Chain D, Crystal Structure Of DctICF10 COMPLEX
Length = 317
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
D R IS E +E LGV FFE + +N K V E
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSVNE 74
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
D R IS E +E LGV FFE + +N K V E
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSVNE 74
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 24 LLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDF-KVKTVFRHDKRVKLQIWDTAGQE 81
+L +G + GKT+ + + + S + T+G K K+ + ++D +GQ
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS-----SSLSFTVFDMSGQG 78
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS---WDNAQVILVGNKCDM 138
RYR + YY+ I + D ++ ++ + + + ++ NK D+
Sbjct: 79 RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138
Query: 139 ED 140
D
Sbjct: 139 RD 140
>pdb|2AWI|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AWI|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AWI|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AWI|D Chain D, Structure Of Prgx Y153c Mutant
pdb|2AWI|E Chain E, Structure Of Prgx Y153c Mutant
pdb|2AWI|F Chain F, Structure Of Prgx Y153c Mutant
pdb|2AWI|G Chain G, Structure Of Prgx Y153c Mutant
pdb|2AWI|H Chain H, Structure Of Prgx Y153c Mutant
pdb|2AWI|I Chain I, Structure Of Prgx Y153c Mutant
pdb|2AWI|J Chain J, Structure Of Prgx Y153c Mutant
pdb|2AWI|K Chain K, Structure Of Prgx Y153c Mutant
pdb|2AWI|L Chain L, Structure Of Prgx Y153c Mutant
Length = 317
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
D R IS E +E LGV FFE + N K V E
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGXNTKSVNE 74
>pdb|2AXZ|A Chain A, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|B Chain B, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|C Chain C, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|D Chain D, Crystal Structure Of PrgxCCF10 COMPLEX
Length = 317
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
D R IS E +E LGV FFE + N K V E
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGXNTKSVNE 74
>pdb|2AXU|A Chain A, Structure Of Prgx
pdb|2AXU|B Chain B, Structure Of Prgx
pdb|2AXU|C Chain C, Structure Of Prgx
pdb|2AXU|D Chain D, Structure Of Prgx
pdb|2AXU|E Chain E, Structure Of Prgx
pdb|2AXU|F Chain F, Structure Of Prgx
pdb|2AXU|G Chain G, Structure Of Prgx
pdb|2AXU|H Chain H, Structure Of Prgx
pdb|2AXU|I Chain I, Structure Of Prgx
pdb|2AXU|J Chain J, Structure Of Prgx
pdb|2AXU|K Chain K, Structure Of Prgx
pdb|2AXU|L Chain L, Structure Of Prgx
Length = 317
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
D R IS E +E LGV FFE + N K V E
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGXNTKSVNE 74
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 15/162 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G++ GK+S + R+ S+ T +K + + + L I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVL-IREEAG-- 63
Query: 82 RYRTITTAYYRG-AMGFILMYDVTNEESFTSIQDWITQIKTYSWD---NAQVILVG--NK 135
A + G A I ++ + +E SF ++ Q+ + + + LVG ++
Sbjct: 64 ----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119
Query: 136 CDMEDERVISFERGKHL-AESLGVEFFETSAKDNVNVKGVFE 176
RV+ R + L A+ ++ET A +NV VF+
Sbjct: 120 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQ 161
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KLL +G + GKT+ L +D ++T+ + + +K +D G +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDR-----LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 57
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCD 137
R + Y+ G + + D + E F + + + + +++GNK D
Sbjct: 58 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 15/169 (8%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G++ GK+S + R+ S+ T +K + + + L I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVL-IREEAG-- 63
Query: 82 RYRTITTAYYRG-AMGFILMYDVTNEESFTSIQDWITQIKTYSWD---NAQVILVG--NK 135
A + G A I ++ + +E SF ++ Q+ + + + LVG ++
Sbjct: 64 ----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119
Query: 136 CDMEDERVISFERGKHL-AESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
RV+ R + L A+ ++ET A +NV VF+ + +
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D ++L++G + GKTS L+R + + ++T+ K + ++WD
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRL---HLGDVVTTVPTVGVNLETL--QYKNISFEVWDLG 74
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILVGNKCD 137
GQ R Y+ I + D T+ + + + + + +++ NK D
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 138 MEDERVISFERGKHLAESLGV 158
+ D +AE LGV
Sbjct: 135 LPDA-----ASEAEIAEQLGV 150
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KLL +G + GKT+ L +D ++T+ + + +K +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDR-----LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQ---DWITQIKTYSWDNAQVILVGNKCD 137
R + Y+ G + + D + E F + D + I + +++GNK D
Sbjct: 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELK--DVPFVILGNKID 135
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 81 ERYRTITTA--YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ 128
E+ R T+ Y +G G + + ++T DW+ +I+ Y DNA+
Sbjct: 247 EKLRQAFTSIQYRQGFHGLNIFAYTAXQSAYTECNDWLNEIRFYIEDNAK 296
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 26.9 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 40/210 (19%)
Query: 44 DSFTSAFVSTVGIDFKVKTVFRHDKRVKL------QIWDTAGQERYRTITTAYYR-GAMG 96
D F S+ G++ + +TV+R ++ K+ D G + + I T R GA
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARP 161
Query: 97 FILMYDVTNEESFTSIQDWITQIKTYSW------------------DNAQVI---LVGNK 135
++ + E++F+ I D + ++K Y++ DNA+ LV
Sbjct: 162 VVMQLPIGREDTFSGIID-VLRMKAYTYGNDLGTDIREIPIPEEYLDNAREYHEKLVEVA 220
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF----------ERLVDIICDK 185
D ++ ++ + G+ E V D + + VF + L+D + D
Sbjct: 221 ADFDENIMLKYLEGEEPTEEELVAAIRKGTID-LKITPVFLGSALKNKGVQLLLDAVVDY 279
Query: 186 MSESLDSDPNLVAGPKGTRLTEQPQRNNPI 215
+ LD P P+G + P N P+
Sbjct: 280 LPSPLDIPPIKGTTPEGEVVEIHPDPNGPL 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,472,229
Number of Sequences: 62578
Number of extensions: 245765
Number of successful extensions: 1379
Number of sequences better than 100.0: 359
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 361
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)