Query psy2300
Match_columns 221
No_of_seqs 154 out of 1899
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 21:13:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.6E-42 3.5E-47 247.9 21.6 178 16-193 4-182 (205)
2 KOG0078|consensus 100.0 1.1E-39 2.4E-44 236.6 21.5 176 13-188 4-179 (207)
3 KOG0094|consensus 100.0 1.9E-39 4.1E-44 231.4 19.8 171 17-187 18-189 (221)
4 KOG0098|consensus 100.0 2E-39 4.3E-44 229.6 19.5 177 17-193 2-178 (216)
5 KOG0092|consensus 100.0 2.7E-39 5.8E-44 230.6 20.0 172 19-190 3-174 (200)
6 KOG0080|consensus 100.0 3.1E-38 6.6E-43 218.2 19.1 203 16-221 6-209 (209)
7 cd04120 Rab12 Rab12 subfamily. 100.0 1E-36 2.2E-41 228.9 24.4 165 22-186 1-166 (202)
8 KOG0093|consensus 100.0 1.1E-37 2.4E-42 212.4 16.3 187 5-191 5-191 (193)
9 cd04121 Rab40 Rab40 subfamily. 100.0 1.3E-36 2.8E-41 226.3 23.3 169 18-187 3-171 (189)
10 KOG0394|consensus 100.0 1.8E-37 3.8E-42 219.3 17.2 169 19-187 7-182 (210)
11 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4E-36 8.7E-41 226.7 23.6 168 22-189 1-174 (201)
12 KOG0086|consensus 100.0 5.5E-37 1.2E-41 210.5 15.8 207 15-221 3-214 (214)
13 PLN03110 Rab GTPase; Provision 100.0 1.6E-35 3.6E-40 225.4 25.3 172 17-188 8-179 (216)
14 cd04110 Rab35 Rab35 subfamily. 100.0 1.4E-35 3.1E-40 223.2 24.7 173 18-191 3-175 (199)
15 KOG0087|consensus 100.0 8.3E-36 1.8E-40 215.6 19.9 179 14-192 7-185 (222)
16 cd04122 Rab14 Rab14 subfamily. 100.0 6E-35 1.3E-39 213.9 21.8 164 21-184 2-165 (166)
17 KOG0079|consensus 100.0 2.7E-36 5.9E-41 205.9 13.1 169 17-186 4-172 (198)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2E-34 4.2E-39 220.0 24.4 172 16-189 8-194 (232)
19 cd01867 Rab8_Rab10_Rab13_like 100.0 1E-34 2.3E-39 212.8 21.7 166 19-184 1-166 (167)
20 cd04144 Ras2 Ras2 subfamily. 100.0 1.1E-34 2.5E-39 216.9 21.3 184 23-219 1-187 (190)
21 KOG0088|consensus 100.0 9.8E-36 2.1E-40 205.4 13.9 169 18-186 10-178 (218)
22 KOG0091|consensus 100.0 3E-35 6.6E-40 204.0 15.8 203 18-221 5-213 (213)
23 cd04125 RabA_like RabA-like su 100.0 5.3E-34 1.1E-38 213.0 23.9 165 22-186 1-165 (188)
24 cd04126 Rab20 Rab20 subfamily. 100.0 2.7E-34 5.9E-39 218.0 22.6 169 22-195 1-202 (220)
25 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.6E-34 5.6E-39 210.5 21.7 164 21-184 2-165 (166)
26 cd04133 Rop_like Rop subfamily 100.0 2.1E-34 4.6E-39 212.2 21.0 159 22-182 2-172 (176)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2E-34 4.2E-39 213.6 20.9 163 19-183 3-180 (182)
28 cd01865 Rab3 Rab3 subfamily. 100.0 4.7E-34 1E-38 208.9 22.1 163 22-184 2-164 (165)
29 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.4E-34 7.5E-39 210.9 21.4 164 21-185 2-166 (172)
30 cd04127 Rab27A Rab27a subfamil 100.0 3.6E-34 7.8E-39 212.4 21.5 167 19-185 2-179 (180)
31 cd04111 Rab39 Rab39 subfamily. 100.0 1.4E-33 2.9E-38 214.1 24.8 168 20-187 1-170 (211)
32 cd04112 Rab26 Rab26 subfamily. 100.0 8.3E-34 1.8E-38 212.4 23.1 166 22-187 1-167 (191)
33 KOG0081|consensus 100.0 1.4E-36 3E-41 209.8 7.3 205 15-219 3-219 (219)
34 PLN03108 Rab family protein; P 100.0 2.3E-33 5.1E-38 212.7 25.3 169 18-186 3-171 (210)
35 PTZ00369 Ras-like protein; Pro 100.0 5.3E-34 1.2E-38 213.1 21.4 166 20-186 4-170 (189)
36 KOG0095|consensus 100.0 4.4E-35 9.5E-40 200.4 14.1 171 16-186 2-172 (213)
37 cd04117 Rab15 Rab15 subfamily. 100.0 6.1E-34 1.3E-38 207.5 21.0 160 22-181 1-160 (161)
38 cd01866 Rab2 Rab2 subfamily. 100.0 1.5E-33 3.2E-38 206.9 22.2 167 18-184 1-167 (168)
39 cd04131 Rnd Rnd subfamily. Th 100.0 7.8E-34 1.7E-38 209.9 20.8 161 21-183 1-176 (178)
40 cd04109 Rab28 Rab28 subfamily. 100.0 1.7E-33 3.8E-38 214.3 22.8 164 22-185 1-168 (215)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 1.1E-33 2.4E-38 207.1 20.9 162 22-183 1-167 (168)
42 cd01875 RhoG RhoG subfamily. 100.0 1.8E-33 4E-38 210.4 21.8 162 21-184 3-178 (191)
43 cd01868 Rab11_like Rab11-like. 100.0 2.2E-33 4.7E-38 205.3 21.6 163 20-182 2-164 (165)
44 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.7E-33 8.1E-38 212.0 23.1 169 22-192 2-185 (222)
45 cd01864 Rab19 Rab19 subfamily. 100.0 3.3E-33 7.2E-38 204.4 21.0 163 19-181 1-164 (165)
46 PLN03071 GTP-binding nuclear p 100.0 3.4E-33 7.4E-38 212.9 21.9 174 19-195 11-184 (219)
47 PF00071 Ras: Ras family; Int 100.0 2.7E-33 5.9E-38 204.2 20.4 161 23-183 1-161 (162)
48 cd04118 Rab24 Rab24 subfamily. 100.0 1.6E-32 3.4E-37 205.8 24.6 165 22-187 1-170 (193)
49 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.7E-33 8.1E-38 207.0 20.9 162 22-184 1-167 (182)
50 cd01874 Cdc42 Cdc42 subfamily. 100.0 7E-33 1.5E-37 204.5 21.0 159 21-181 1-173 (175)
51 cd04136 Rap_like Rap-like subf 100.0 5.6E-33 1.2E-37 202.6 20.3 160 22-182 2-162 (163)
52 cd04175 Rap1 Rap1 subgroup. T 100.0 6.6E-33 1.4E-37 202.6 20.4 162 21-183 1-163 (164)
53 cd04132 Rho4_like Rho4-like su 100.0 9.4E-33 2E-37 206.0 21.6 164 22-187 1-171 (187)
54 KOG0097|consensus 100.0 4.7E-33 1E-37 189.0 17.7 205 17-221 7-215 (215)
55 cd04113 Rab4 Rab4 subfamily. 100.0 8.9E-33 1.9E-37 201.3 20.6 160 22-181 1-160 (161)
56 smart00175 RAB Rab subfamily o 100.0 1.3E-32 2.9E-37 200.8 21.4 163 22-184 1-163 (164)
57 cd00877 Ran Ran (Ras-related n 100.0 2.4E-32 5.1E-37 200.1 21.6 160 22-184 1-160 (166)
58 PLN03118 Rab family protein; P 100.0 6E-32 1.3E-36 205.4 24.5 171 15-186 8-180 (211)
59 cd04106 Rab23_lke Rab23-like s 100.0 1.5E-32 3.3E-37 200.2 20.2 159 22-181 1-161 (162)
60 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3E-32 6.6E-37 200.2 21.8 162 23-184 2-166 (170)
61 cd04134 Rho3 Rho3 subfamily. 100.0 3.1E-32 6.8E-37 203.5 21.8 161 22-184 1-175 (189)
62 cd04124 RabL2 RabL2 subfamily. 100.0 3.8E-32 8.3E-37 198.1 21.4 160 22-185 1-160 (161)
63 cd04116 Rab9 Rab9 subfamily. 100.0 4.6E-32 1E-36 199.3 21.4 162 19-181 3-169 (170)
64 cd04140 ARHI_like ARHI subfami 100.0 3.3E-32 7.2E-37 199.2 20.4 159 22-181 2-163 (165)
65 smart00176 RAN Ran (Ras-relate 100.0 4.5E-32 9.9E-37 203.4 21.3 167 27-196 1-167 (200)
66 cd04176 Rap2 Rap2 subgroup. T 100.0 3.7E-32 8E-37 198.4 20.3 161 21-182 1-162 (163)
67 cd01871 Rac1_like Rac1-like su 100.0 3.8E-32 8.2E-37 200.4 20.3 158 22-181 2-173 (174)
68 cd01860 Rab5_related Rab5-rela 100.0 8.1E-32 1.8E-36 196.5 21.4 162 21-182 1-162 (163)
69 cd01861 Rab6 Rab6 subfamily. 100.0 6E-32 1.3E-36 196.8 20.7 160 22-181 1-160 (161)
70 smart00173 RAS Ras subfamily o 100.0 5.7E-32 1.2E-36 197.6 20.4 161 22-183 1-162 (164)
71 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8E-32 1.7E-36 196.1 20.7 160 21-182 1-161 (162)
72 cd04115 Rab33B_Rab33A Rab33B/R 100.0 9E-32 1.9E-36 197.8 20.9 162 21-182 2-168 (170)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.2E-31 2.6E-36 195.7 20.7 161 21-182 2-163 (164)
74 cd04142 RRP22 RRP22 subfamily. 100.0 1.8E-31 3.8E-36 200.4 20.5 164 22-185 1-176 (198)
75 cd04143 Rhes_like Rhes_like su 100.0 2E-31 4.3E-36 206.1 21.3 160 22-182 1-170 (247)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.8E-31 6E-36 193.9 20.8 160 22-182 1-163 (164)
77 cd04123 Rab21 Rab21 subfamily. 100.0 6.3E-31 1.4E-35 191.4 21.4 161 22-182 1-161 (162)
78 cd01862 Rab7 Rab7 subfamily. 100.0 8.1E-31 1.8E-35 192.8 21.6 165 22-186 1-170 (172)
79 cd01892 Miro2 Miro2 subfamily. 100.0 3.7E-31 8.1E-36 194.3 19.2 163 19-183 2-166 (169)
80 smart00174 RHO Rho (Ras homolo 100.0 4.7E-31 1E-35 194.6 19.8 159 24-184 1-173 (174)
81 cd01863 Rab18 Rab18 subfamily. 100.0 9E-31 2E-35 190.7 21.0 159 22-181 1-160 (161)
82 cd01873 RhoBTB RhoBTB subfamil 100.0 6E-31 1.3E-35 196.9 20.0 158 21-181 2-194 (195)
83 cd04114 Rab30 Rab30 subfamily. 100.0 2.5E-30 5.5E-35 189.7 22.3 164 19-182 5-168 (169)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 2E-30 4.4E-35 190.3 21.1 161 22-183 2-164 (168)
85 cd04148 RGK RGK subfamily. Th 100.0 2.1E-30 4.5E-35 197.9 21.2 164 22-187 1-167 (221)
86 cd00154 Rab Rab family. Rab G 100.0 2E-30 4.3E-35 187.7 19.9 158 22-179 1-158 (159)
87 cd04103 Centaurin_gamma Centau 100.0 1.8E-30 3.8E-35 188.5 19.4 153 22-181 1-157 (158)
88 cd04146 RERG_RasL11_like RERG/ 100.0 1.5E-30 3.3E-35 190.3 18.5 160 23-183 1-164 (165)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.9E-30 8.5E-35 189.6 20.6 157 22-180 1-171 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 3.8E-30 8.2E-35 189.7 20.4 159 22-182 1-173 (174)
91 KOG0083|consensus 100.0 3.4E-32 7.3E-37 182.9 7.0 162 25-186 1-163 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 1.7E-29 3.8E-34 184.2 20.6 162 22-184 1-163 (164)
93 cd00876 Ras Ras family. The R 100.0 4E-29 8.7E-34 181.5 18.8 158 23-181 1-159 (160)
94 PLN00223 ADP-ribosylation fact 100.0 2.3E-29 5E-34 186.6 17.5 160 19-185 15-180 (181)
95 cd04149 Arf6 Arf6 subfamily. 100.0 1.4E-29 3.1E-34 185.7 16.2 154 20-180 8-167 (168)
96 cd01870 RhoA_like RhoA-like su 100.0 9.1E-29 2E-33 182.5 20.6 159 22-182 2-174 (175)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 4.4E-29 9.5E-34 185.6 18.5 164 21-187 3-174 (183)
98 cd04147 Ras_dva Ras-dva subfam 100.0 6.4E-29 1.4E-33 186.9 19.6 160 23-183 1-163 (198)
99 cd04137 RheB Rheb (Ras Homolog 100.0 2.1E-28 4.4E-33 181.5 21.1 164 22-186 2-166 (180)
100 cd04129 Rho2 Rho2 subfamily. 100.0 1.8E-28 3.9E-33 182.9 20.8 164 22-187 2-177 (187)
101 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 7.6E-30 1.7E-34 186.4 12.9 152 24-180 2-163 (164)
102 PTZ00133 ADP-ribosylation fact 100.0 6.6E-29 1.4E-33 184.4 18.1 161 19-186 15-181 (182)
103 cd04158 ARD1 ARD1 subfamily. 100.0 5.9E-29 1.3E-33 182.6 17.5 156 23-185 1-163 (169)
104 PTZ00132 GTP-binding nuclear p 100.0 3.2E-28 6.9E-33 185.4 22.0 168 15-185 3-170 (215)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.2E-29 2.7E-34 184.4 13.6 152 22-180 1-158 (159)
106 smart00177 ARF ARF-like small 100.0 2.4E-29 5.2E-34 185.7 14.7 156 20-182 12-173 (175)
107 cd00157 Rho Rho (Ras homology) 100.0 2.9E-28 6.3E-33 179.0 20.3 157 22-180 1-170 (171)
108 KOG4252|consensus 100.0 6.1E-31 1.3E-35 185.3 4.5 184 11-195 10-193 (246)
109 cd04154 Arl2 Arl2 subfamily. 100.0 1.5E-28 3.2E-33 181.2 17.0 155 19-180 12-172 (173)
110 KOG0395|consensus 100.0 4.4E-28 9.6E-33 180.6 18.7 166 20-186 2-168 (196)
111 cd01893 Miro1 Miro1 subfamily. 100.0 1E-27 2.2E-32 175.6 18.4 160 22-184 1-165 (166)
112 KOG0393|consensus 100.0 1.7E-28 3.6E-33 179.2 12.7 165 20-186 3-182 (198)
113 cd04157 Arl6 Arl6 subfamily. 100.0 3.4E-28 7.4E-33 177.1 14.3 152 23-180 1-161 (162)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.2E-28 7E-33 178.4 13.0 153 23-180 1-166 (167)
115 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.9E-27 6.2E-32 177.4 18.0 149 22-170 1-177 (202)
116 PF00025 Arf: ADP-ribosylation 100.0 2.8E-27 6.1E-32 174.4 16.9 157 19-182 12-175 (175)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.6E-27 5.6E-32 174.7 16.7 153 21-180 15-173 (174)
118 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.2E-27 4.8E-32 172.6 14.5 152 23-180 1-159 (160)
119 cd00879 Sar1 Sar1 subfamily. 100.0 4.6E-27 9.9E-32 175.8 16.5 156 19-181 17-189 (190)
120 cd04151 Arl1 Arl1 subfamily. 100.0 1.4E-27 3.1E-32 173.4 13.3 151 23-180 1-157 (158)
121 KOG0073|consensus 100.0 1.5E-26 3.2E-31 160.9 16.9 165 17-186 12-181 (185)
122 PTZ00099 rab6; Provisional 100.0 3.2E-26 6.8E-31 168.7 19.7 143 44-186 3-145 (176)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.5E-27 9.8E-32 170.6 15.0 151 23-180 1-157 (158)
124 cd04160 Arfrp1 Arfrp1 subfamil 100.0 8.8E-27 1.9E-31 170.6 16.1 152 23-180 1-166 (167)
125 PLN00023 GTP-binding protein; 99.9 2.4E-26 5.2E-31 180.5 17.9 144 15-158 15-189 (334)
126 smart00178 SAR Sar1p-like memb 99.9 1.9E-26 4.1E-31 171.5 16.2 156 19-181 15-183 (184)
127 cd01890 LepA LepA subfamily. 99.9 1.3E-25 2.7E-30 166.3 16.3 154 23-182 2-176 (179)
128 cd04159 Arl10_like Arl10-like 99.9 1.1E-25 2.4E-30 162.8 15.3 151 24-180 2-158 (159)
129 KOG0070|consensus 99.9 6.4E-26 1.4E-30 161.7 12.0 160 19-185 15-180 (181)
130 cd01897 NOG NOG1 is a nucleola 99.9 3E-25 6.5E-30 162.6 16.0 155 23-182 2-167 (168)
131 PRK12299 obgE GTPase CgtA; Rev 99.9 2.8E-25 6.1E-30 178.2 16.9 164 21-185 158-330 (335)
132 cd01898 Obg Obg subfamily. Th 99.9 5.3E-25 1.2E-29 161.5 15.6 157 23-181 2-169 (170)
133 cd04155 Arl3 Arl3 subfamily. 99.9 1.8E-24 4E-29 159.2 17.8 155 19-180 12-172 (173)
134 cd01878 HflX HflX subfamily. 99.9 7.9E-25 1.7E-29 165.5 15.7 157 18-181 38-203 (204)
135 TIGR00231 small_GTP small GTP- 99.9 3.3E-24 7.2E-29 154.7 18.2 158 21-179 1-160 (161)
136 cd04171 SelB SelB subfamily. 99.9 1.7E-24 3.6E-29 157.8 15.9 151 23-180 2-163 (164)
137 TIGR02528 EutP ethanolamine ut 99.9 1.7E-24 3.7E-29 154.4 12.3 134 23-179 2-141 (142)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.1E-23 2.3E-28 154.3 15.9 157 23-183 2-166 (168)
139 cd01891 TypA_BipA TypA (tyrosi 99.9 4.3E-24 9.4E-29 160.2 13.5 160 22-185 3-190 (194)
140 cd00882 Ras_like_GTPase Ras-li 99.9 3.3E-23 7.2E-28 148.1 16.9 153 26-179 1-156 (157)
141 PRK04213 GTP-binding protein; 99.9 5.6E-24 1.2E-28 160.4 13.3 154 19-185 7-194 (201)
142 COG1100 GTPase SAR1 and relate 99.9 6.4E-23 1.4E-27 156.6 19.3 166 21-186 5-188 (219)
143 TIGR03156 GTP_HflX GTP-binding 99.9 2.3E-23 5E-28 168.4 17.3 155 19-181 187-350 (351)
144 PF02421 FeoB_N: Ferrous iron 99.9 1E-24 2.2E-29 155.6 8.3 148 22-178 1-156 (156)
145 cd01879 FeoB Ferrous iron tran 99.9 2.8E-23 6.1E-28 150.5 16.0 147 26-181 1-155 (158)
146 TIGR02729 Obg_CgtA Obg family 99.9 3.2E-23 6.9E-28 166.2 17.2 160 21-182 157-328 (329)
147 KOG0071|consensus 99.9 2.5E-23 5.4E-28 141.2 13.6 156 20-182 16-177 (180)
148 TIGR00436 era GTP-binding prot 99.9 3.3E-23 7.1E-28 162.8 15.1 152 23-182 2-163 (270)
149 KOG0075|consensus 99.9 1.2E-23 2.6E-28 143.8 9.9 154 21-183 20-182 (186)
150 PRK15494 era GTPase Era; Provi 99.9 6.3E-23 1.4E-27 165.6 14.8 154 19-183 50-216 (339)
151 cd01881 Obg_like The Obg-like 99.9 3.2E-23 7E-28 152.8 12.1 155 26-181 1-175 (176)
152 PRK12297 obgE GTPase CgtA; Rev 99.9 3.1E-22 6.6E-27 164.5 18.2 159 22-186 159-330 (424)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.1E-22 4.7E-27 145.5 14.7 147 22-182 2-156 (157)
154 PRK12296 obgE GTPase CgtA; Rev 99.9 1.6E-22 3.4E-27 168.3 15.8 165 20-187 158-344 (500)
155 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-22 2.5E-27 147.0 12.7 146 25-181 1-156 (157)
156 PRK00454 engB GTP-binding prot 99.9 4.5E-22 9.8E-27 149.4 16.1 165 12-183 15-194 (196)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.4E-22 7.5E-27 165.9 16.8 154 19-186 201-363 (442)
158 KOG3883|consensus 99.9 1.2E-21 2.5E-26 135.0 16.3 165 20-185 8-177 (198)
159 cd01889 SelB_euk SelB subfamil 99.9 2.2E-22 4.9E-27 150.6 13.9 158 22-183 1-186 (192)
160 PRK03003 GTP-binding protein D 99.9 2.8E-22 6E-27 168.8 15.7 155 20-184 37-200 (472)
161 PF08477 Miro: Miro-like prote 99.9 2.5E-22 5.4E-27 138.9 12.8 114 23-137 1-119 (119)
162 TIGR01393 lepA GTP-binding pro 99.9 5.1E-22 1.1E-26 170.3 17.4 156 21-182 3-179 (595)
163 cd00881 GTP_translation_factor 99.9 4.1E-22 8.8E-27 148.5 14.2 156 23-182 1-186 (189)
164 PRK15467 ethanolamine utilizat 99.9 2.2E-22 4.9E-27 145.9 12.2 142 23-186 3-150 (158)
165 PRK03003 GTP-binding protein D 99.9 3.3E-22 7.1E-27 168.4 14.4 160 20-185 210-384 (472)
166 PRK11058 GTPase HflX; Provisio 99.9 9.4E-22 2E-26 162.5 16.7 159 21-185 197-364 (426)
167 PRK05291 trmE tRNA modificatio 99.9 3.7E-22 8E-27 166.6 14.1 149 20-184 214-371 (449)
168 cd01888 eIF2_gamma eIF2-gamma 99.9 6.6E-22 1.4E-26 149.2 13.8 159 22-182 1-198 (203)
169 TIGR00487 IF-2 translation ini 99.9 2.3E-21 5.1E-26 165.5 18.6 154 19-180 85-247 (587)
170 TIGR03598 GTPase_YsxC ribosome 99.9 9.8E-22 2.1E-26 145.6 14.2 152 14-172 11-179 (179)
171 TIGR03594 GTPase_EngA ribosome 99.9 2.9E-21 6.3E-26 161.5 18.1 161 19-185 170-346 (429)
172 cd01895 EngA2 EngA2 subfamily. 99.9 6E-21 1.3E-25 140.0 15.8 155 21-181 2-173 (174)
173 TIGR00475 selB selenocysteine- 99.9 4E-21 8.8E-26 164.7 17.1 154 22-184 1-167 (581)
174 PRK12298 obgE GTPase CgtA; Rev 99.9 3.2E-21 6.8E-26 157.7 15.4 161 22-185 160-335 (390)
175 cd04163 Era Era subfamily. Er 99.9 6.2E-21 1.4E-25 138.9 15.3 156 21-181 3-167 (168)
176 KOG0096|consensus 99.9 4.1E-22 8.9E-27 142.1 8.5 186 20-208 9-194 (216)
177 PRK00089 era GTPase Era; Revie 99.9 4.5E-21 9.9E-26 152.5 14.5 159 20-183 4-171 (292)
178 CHL00189 infB translation init 99.9 7.8E-21 1.7E-25 164.7 16.3 157 19-182 242-409 (742)
179 KOG1673|consensus 99.9 4E-21 8.7E-26 132.8 11.3 164 20-184 19-187 (205)
180 PRK05306 infB translation init 99.9 2.1E-20 4.6E-25 163.4 18.4 154 18-180 287-449 (787)
181 PF00009 GTP_EFTU: Elongation 99.9 3E-21 6.4E-26 144.1 11.1 159 20-182 2-186 (188)
182 KOG0074|consensus 99.9 2.6E-21 5.7E-26 131.6 9.3 156 19-180 15-176 (185)
183 KOG0076|consensus 99.9 1.6E-21 3.5E-26 137.2 7.8 159 21-185 17-189 (197)
184 PRK05433 GTP-binding protein L 99.9 2.6E-20 5.7E-25 159.9 16.9 158 20-183 6-184 (600)
185 PRK09554 feoB ferrous iron tra 99.9 3.8E-20 8.3E-25 162.4 18.1 153 21-182 3-167 (772)
186 TIGR03594 GTPase_EngA ribosome 99.9 1.3E-20 2.8E-25 157.6 14.4 152 23-184 1-161 (429)
187 cd04105 SR_beta Signal recogni 99.9 6.1E-20 1.3E-24 138.4 16.1 118 23-141 2-124 (203)
188 COG1159 Era GTPase [General fu 99.8 2.2E-20 4.7E-25 143.4 13.2 159 20-183 5-172 (298)
189 PRK00093 GTP-binding protein D 99.8 5.7E-20 1.2E-24 153.9 16.8 159 20-185 172-346 (435)
190 PRK00093 GTP-binding protein D 99.8 3.4E-20 7.3E-25 155.3 14.5 147 22-180 2-159 (435)
191 TIGR00437 feoB ferrous iron tr 99.8 6.7E-20 1.5E-24 157.4 16.5 146 28-182 1-154 (591)
192 KOG4423|consensus 99.8 1.9E-22 4.1E-27 143.4 0.6 169 18-186 22-197 (229)
193 cd00880 Era_like Era (E. coli 99.8 7E-20 1.5E-24 132.1 14.0 151 26-181 1-162 (163)
194 KOG0072|consensus 99.8 3.3E-21 7.1E-26 131.5 6.3 160 19-185 16-181 (182)
195 PRK09518 bifunctional cytidyla 99.8 7.3E-20 1.6E-24 160.9 16.4 155 20-184 274-437 (712)
196 TIGR00491 aIF-2 translation in 99.8 1.3E-19 2.8E-24 154.7 16.4 159 21-186 4-219 (590)
197 PRK09518 bifunctional cytidyla 99.8 1.6E-19 3.6E-24 158.7 16.2 158 20-185 449-623 (712)
198 COG2229 Predicted GTPase [Gene 99.8 5E-19 1.1E-23 126.3 15.6 155 19-181 8-176 (187)
199 PRK12317 elongation factor 1-a 99.8 1.4E-19 3E-24 150.9 14.3 156 19-176 4-198 (425)
200 TIGR00483 EF-1_alpha translati 99.8 1.3E-19 2.9E-24 151.0 13.8 155 19-175 5-199 (426)
201 COG1160 Predicted GTPases [Gen 99.8 1.1E-19 2.4E-24 146.8 12.6 152 22-183 4-165 (444)
202 PRK10218 GTP-binding protein; 99.8 6.9E-19 1.5E-23 150.7 17.3 159 20-182 4-194 (607)
203 cd01876 YihA_EngB The YihA (En 99.8 4.1E-19 8.8E-24 129.6 13.7 152 23-181 1-169 (170)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.6E-19 3.5E-24 136.7 11.9 149 23-174 1-185 (208)
205 TIGR01394 TypA_BipA GTP-bindin 99.8 2.4E-19 5.2E-24 153.6 14.1 156 23-182 3-190 (594)
206 TIGR03680 eif2g_arch translati 99.8 2.7E-19 5.8E-24 148.1 13.8 161 20-182 3-195 (406)
207 COG1160 Predicted GTPases [Gen 99.8 1.1E-18 2.4E-23 141.1 16.1 161 20-185 177-353 (444)
208 cd01896 DRG The developmentall 99.8 3.6E-18 7.8E-23 131.3 17.3 151 23-182 2-225 (233)
209 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.5E-18 5.5E-23 128.5 15.8 147 21-171 2-171 (195)
210 PRK04000 translation initiatio 99.8 7.9E-19 1.7E-23 145.2 14.0 162 18-182 6-200 (411)
211 COG0486 ThdF Predicted GTPase 99.8 9.8E-19 2.1E-23 141.8 14.1 155 20-185 216-378 (454)
212 PRK10512 selenocysteinyl-tRNA- 99.8 2E-18 4.3E-23 148.7 16.8 154 22-183 1-166 (614)
213 PRK04004 translation initiatio 99.8 1.9E-18 4.1E-23 148.1 16.0 160 20-186 5-221 (586)
214 COG2262 HflX GTPases [General 99.8 3E-18 6.5E-23 136.7 15.7 168 12-186 183-359 (411)
215 KOG1489|consensus 99.8 2.2E-18 4.7E-23 132.8 13.2 156 21-181 196-365 (366)
216 KOG1423|consensus 99.8 2.8E-18 6.2E-23 131.5 13.6 169 11-183 62-271 (379)
217 cd04168 TetM_like Tet(M)-like 99.8 2.7E-18 5.8E-23 132.2 13.6 114 23-140 1-130 (237)
218 PF10662 PduV-EutP: Ethanolami 99.8 3.6E-18 7.9E-23 119.3 12.7 134 23-179 3-142 (143)
219 cd01883 EF1_alpha Eukaryotic e 99.8 9.4E-19 2E-23 133.5 9.9 148 23-172 1-194 (219)
220 COG0218 Predicted GTPase [Gene 99.8 1.1E-17 2.4E-22 122.0 14.9 164 13-184 16-198 (200)
221 PRK12736 elongation factor Tu; 99.8 8.1E-18 1.8E-22 138.7 15.4 159 19-181 10-199 (394)
222 COG0370 FeoB Fe2+ transport sy 99.8 3.3E-18 7.2E-23 144.2 13.3 157 21-186 3-167 (653)
223 cd04167 Snu114p Snu114p subfam 99.8 4.2E-18 9E-23 129.5 12.7 113 23-139 2-136 (213)
224 PRK12735 elongation factor Tu; 99.8 8E-18 1.7E-22 138.9 15.3 159 19-181 10-201 (396)
225 COG1084 Predicted GTPase [Gene 99.8 1.3E-17 2.8E-22 129.4 13.8 160 20-185 167-338 (346)
226 TIGR00485 EF-Tu translation el 99.8 1.6E-17 3.4E-22 137.2 15.0 147 19-169 10-179 (394)
227 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.5E-17 7.5E-22 124.9 14.7 154 23-180 1-220 (224)
228 KOG0077|consensus 99.8 3.7E-18 7.9E-23 119.5 8.1 156 19-181 18-191 (193)
229 COG0536 Obg Predicted GTPase [ 99.7 5.2E-17 1.1E-21 126.6 14.2 164 22-186 160-336 (369)
230 CHL00071 tufA elongation facto 99.7 7.5E-17 1.6E-21 133.7 15.5 150 18-171 9-181 (409)
231 cd01885 EF2 EF2 (for archaea a 99.7 7.5E-17 1.6E-21 122.6 14.1 113 23-139 2-138 (222)
232 COG0532 InfB Translation initi 99.7 1.2E-16 2.5E-21 131.5 15.0 155 20-183 4-170 (509)
233 PLN03126 Elongation factor Tu; 99.7 2.3E-16 4.9E-21 132.2 16.9 150 17-170 77-249 (478)
234 KOG0462|consensus 99.7 8.4E-17 1.8E-21 131.9 13.5 168 12-183 51-235 (650)
235 cd04104 p47_IIGP_like p47 (47- 99.7 3.9E-16 8.4E-21 117.3 15.6 157 22-186 2-187 (197)
236 KOG1707|consensus 99.7 2.2E-17 4.7E-22 136.2 9.4 177 20-198 8-190 (625)
237 TIGR02034 CysN sulfate adenyly 99.7 9.5E-17 2.1E-21 132.8 12.8 150 22-174 1-188 (406)
238 PRK05124 cysN sulfate adenylyl 99.7 1E-16 2.2E-21 134.7 13.0 155 18-175 24-217 (474)
239 PRK00049 elongation factor Tu; 99.7 3.6E-16 7.8E-21 129.0 15.8 147 19-169 10-179 (396)
240 cd04169 RF3 RF3 subfamily. Pe 99.7 4.2E-16 9.1E-21 121.9 15.1 116 22-141 3-138 (267)
241 PLN00043 elongation factor 1-a 99.7 1.5E-16 3.2E-21 132.7 13.3 151 19-173 5-203 (447)
242 KOG1490|consensus 99.7 5.9E-17 1.3E-21 131.6 10.4 199 18-219 165-378 (620)
243 KOG1145|consensus 99.7 2.7E-16 5.9E-21 129.0 14.3 154 20-181 152-314 (683)
244 PRK00741 prfC peptide chain re 99.7 2.5E-16 5.3E-21 133.6 14.4 118 19-140 8-145 (526)
245 PLN03127 Elongation factor Tu; 99.7 7.4E-16 1.6E-20 128.5 16.2 161 17-181 57-250 (447)
246 COG1163 DRG Predicted GTPase [ 99.7 7.4E-16 1.6E-20 119.4 14.5 155 20-183 62-289 (365)
247 cd01850 CDC_Septin CDC/Septin. 99.7 1.1E-15 2.5E-20 120.1 15.2 142 20-166 3-185 (276)
248 PTZ00141 elongation factor 1- 99.7 6E-16 1.3E-20 129.2 14.3 152 19-173 5-203 (446)
249 PRK05506 bifunctional sulfate 99.7 4.4E-16 9.6E-21 135.7 13.4 155 16-173 19-211 (632)
250 cd04170 EF-G_bact Elongation f 99.7 1.4E-16 3.1E-21 125.2 9.3 145 23-173 1-163 (268)
251 cd01886 EF-G Elongation factor 99.7 4E-16 8.7E-21 122.2 11.4 115 23-141 1-131 (270)
252 PRK13351 elongation factor G; 99.7 6E-16 1.3E-20 136.1 13.4 118 19-140 6-139 (687)
253 PTZ00327 eukaryotic translatio 99.7 7.5E-16 1.6E-20 128.3 12.9 162 19-182 32-232 (460)
254 cd01899 Ygr210 Ygr210 subfamil 99.7 1.8E-15 3.9E-20 120.7 14.1 81 24-104 1-110 (318)
255 TIGR00503 prfC peptide chain r 99.7 3E-15 6.6E-20 127.0 15.8 117 19-139 9-145 (527)
256 KOG1191|consensus 99.7 3.5E-16 7.5E-21 127.1 8.9 172 21-194 268-461 (531)
257 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.6E-15 3.5E-20 115.4 11.9 161 23-186 1-179 (232)
258 COG0481 LepA Membrane GTPase L 99.7 2.9E-15 6.2E-20 121.3 13.7 158 19-182 7-185 (603)
259 PF01926 MMR_HSR1: 50S ribosom 99.6 2.6E-15 5.7E-20 103.2 9.9 106 23-135 1-116 (116)
260 PRK12739 elongation factor G; 99.6 7.8E-15 1.7E-19 129.0 15.1 120 17-140 4-139 (691)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.8E-14 3.9E-19 108.2 14.9 161 22-186 1-187 (196)
262 COG5256 TEF1 Translation elong 99.6 7.6E-15 1.7E-19 117.4 12.2 154 19-174 5-202 (428)
263 PF09439 SRPRB: Signal recogni 99.6 3.1E-15 6.8E-20 109.2 7.9 117 22-142 4-128 (181)
264 TIGR00484 EF-G translation elo 99.6 1.2E-14 2.7E-19 127.7 13.1 121 17-141 6-142 (689)
265 COG3596 Predicted GTPase [Gene 99.6 6.3E-15 1.4E-19 112.1 9.4 166 13-184 31-223 (296)
266 PRK00007 elongation factor G; 99.6 3.4E-14 7.4E-19 124.9 15.4 118 18-139 7-140 (693)
267 PRK09602 translation-associate 99.6 7.8E-14 1.7E-18 114.5 15.5 83 22-104 2-113 (396)
268 PRK09866 hypothetical protein; 99.6 1.8E-13 3.9E-18 115.7 17.9 109 70-180 230-350 (741)
269 PRK12740 elongation factor G; 99.5 1.1E-13 2.4E-18 121.7 13.5 109 27-139 1-125 (668)
270 COG1217 TypA Predicted membran 99.5 2.3E-13 5E-18 110.1 12.1 157 21-181 5-193 (603)
271 KOG0090|consensus 99.5 2E-13 4.4E-18 99.9 10.4 155 21-181 38-237 (238)
272 COG4917 EutP Ethanolamine util 99.5 1.3E-13 2.8E-18 92.4 8.4 136 23-180 3-143 (148)
273 PRK14845 translation initiatio 99.5 7.8E-13 1.7E-17 118.9 16.1 143 33-184 473-674 (1049)
274 TIGR00490 aEF-2 translation el 99.5 2.2E-13 4.8E-18 120.2 10.6 118 19-140 17-152 (720)
275 PTZ00258 GTP-binding protein; 99.5 1.7E-12 3.7E-17 105.7 13.4 86 19-104 19-126 (390)
276 cd00066 G-alpha G protein alph 99.5 4.3E-12 9.3E-17 101.9 15.6 120 68-187 159-315 (317)
277 smart00275 G_alpha G protein a 99.5 6.5E-12 1.4E-16 101.6 16.3 119 69-187 183-338 (342)
278 KOG1707|consensus 99.4 3E-12 6.6E-17 106.2 14.4 168 11-183 415-583 (625)
279 KOG3905|consensus 99.4 2.6E-12 5.7E-17 99.9 13.1 161 21-184 52-291 (473)
280 KOG1144|consensus 99.4 5.2E-13 1.1E-17 113.2 9.8 165 20-191 474-695 (1064)
281 TIGR00157 ribosome small subun 99.4 8.4E-13 1.8E-17 102.2 10.3 96 81-180 24-120 (245)
282 TIGR00101 ureG urease accessor 99.4 2.6E-12 5.7E-17 96.3 12.4 102 70-182 92-195 (199)
283 cd01853 Toc34_like Toc34-like 99.4 2.8E-12 6.1E-17 99.2 12.7 125 13-139 23-162 (249)
284 TIGR00073 hypB hydrogenase acc 99.4 5.3E-12 1.1E-16 95.5 12.8 154 17-181 18-205 (207)
285 PRK13768 GTPase; Provisional 99.4 2.7E-12 5.7E-17 99.9 11.4 109 71-182 98-246 (253)
286 KOG0410|consensus 99.4 4.6E-13 9.9E-18 104.0 6.2 163 12-186 169-344 (410)
287 PF05783 DLIC: Dynein light in 99.4 8.1E-12 1.8E-16 104.2 14.0 163 20-185 24-266 (472)
288 PRK07560 elongation factor EF- 99.4 3.8E-12 8.3E-17 112.7 12.5 117 19-139 18-152 (731)
289 TIGR00991 3a0901s02IAP34 GTP-b 99.4 8.9E-12 1.9E-16 98.1 13.1 125 19-145 36-172 (313)
290 COG2895 CysN GTPases - Sulfate 99.4 6.7E-12 1.4E-16 98.6 12.1 149 19-172 4-192 (431)
291 PF04548 AIG1: AIG1 family; I 99.4 5.2E-12 1.1E-16 95.9 10.7 161 22-186 1-189 (212)
292 PRK09601 GTP-binding protein Y 99.4 2.6E-11 5.7E-16 97.8 15.0 83 22-104 3-107 (364)
293 TIGR02836 spore_IV_A stage IV 99.4 4.6E-11 9.9E-16 96.6 15.9 157 20-182 16-233 (492)
294 cd01882 BMS1 Bms1. Bms1 is an 99.4 2.6E-11 5.6E-16 92.9 13.9 140 19-170 37-183 (225)
295 KOG1532|consensus 99.4 1.3E-11 2.8E-16 94.0 11.9 114 70-185 116-266 (366)
296 PLN00116 translation elongatio 99.4 3.5E-12 7.7E-17 114.3 10.4 119 17-139 15-163 (843)
297 KOG0458|consensus 99.4 1.5E-11 3.2E-16 102.3 12.6 156 16-173 172-372 (603)
298 PTZ00416 elongation factor 2; 99.4 6.9E-12 1.5E-16 112.3 11.5 118 18-139 16-157 (836)
299 smart00010 small_GTPase Small 99.4 1.7E-11 3.7E-16 84.8 11.2 114 22-172 1-115 (124)
300 PRK09435 membrane ATPase/prote 99.3 3.3E-11 7E-16 96.6 13.8 104 69-183 148-260 (332)
301 KOG0461|consensus 99.3 5.7E-11 1.2E-15 93.3 13.3 159 20-183 6-193 (522)
302 COG5257 GCD11 Translation init 99.3 5E-12 1.1E-16 98.2 7.4 163 19-183 8-202 (415)
303 KOG0705|consensus 99.3 8.3E-12 1.8E-16 102.9 7.8 174 2-186 15-192 (749)
304 PF00350 Dynamin_N: Dynamin fa 99.3 5.2E-11 1.1E-15 87.1 11.1 62 72-136 103-168 (168)
305 KOG0082|consensus 99.3 3E-10 6.5E-15 90.7 15.6 121 67-187 192-348 (354)
306 PF03029 ATP_bind_1: Conserved 99.3 6.1E-12 1.3E-16 96.8 5.8 110 71-182 92-236 (238)
307 cd01900 YchF YchF subfamily. 99.3 6.3E-11 1.4E-15 92.6 11.1 81 24-104 1-103 (274)
308 COG3276 SelB Selenocysteine-sp 99.3 8.4E-11 1.8E-15 95.1 11.9 154 23-183 2-162 (447)
309 PF05049 IIGP: Interferon-indu 99.3 3.9E-11 8.5E-16 96.9 9.9 158 19-184 33-219 (376)
310 TIGR00750 lao LAO/AO transport 99.2 8.6E-11 1.9E-15 93.8 10.1 104 69-183 126-238 (300)
311 PF00735 Septin: Septin; Inte 99.2 5.7E-10 1.2E-14 87.9 14.2 139 21-164 4-182 (281)
312 KOG1486|consensus 99.2 1.1E-09 2.3E-14 82.7 14.5 155 20-183 61-288 (364)
313 COG0378 HypB Ni2+-binding GTPa 99.2 5.7E-10 1.2E-14 81.3 11.8 55 128-182 144-200 (202)
314 COG0012 Predicted GTPase, prob 99.2 5.3E-10 1.2E-14 89.2 12.6 84 21-104 2-108 (372)
315 smart00053 DYNc Dynamin, GTPas 99.2 5.1E-10 1.1E-14 85.9 11.4 68 70-140 125-206 (240)
316 COG0050 TufB GTPases - transla 99.2 2.7E-10 5.9E-15 87.7 9.4 145 19-167 10-177 (394)
317 COG0480 FusA Translation elong 99.1 2.2E-10 4.8E-15 99.7 9.4 118 18-139 7-141 (697)
318 TIGR00993 3a0901s04IAP86 chlor 99.1 9.5E-10 2.1E-14 93.9 12.4 125 14-140 111-250 (763)
319 PRK10463 hydrogenase nickel in 99.1 4.7E-10 1E-14 87.8 9.4 56 126-181 230-287 (290)
320 KOG3886|consensus 99.1 2.3E-10 5.1E-15 85.1 6.6 147 21-168 4-164 (295)
321 KOG1954|consensus 99.1 6E-10 1.3E-14 88.3 8.6 124 15-141 52-226 (532)
322 cd01859 MJ1464 MJ1464. This f 99.1 5.2E-10 1.1E-14 80.9 7.3 95 83-183 2-96 (156)
323 COG4108 PrfC Peptide chain rel 99.1 2.3E-09 5.1E-14 86.7 11.4 133 20-158 11-163 (528)
324 KOG0468|consensus 99.0 1.5E-09 3.2E-14 91.8 9.8 116 19-138 126-261 (971)
325 PRK12289 GTPase RsgA; Reviewed 99.0 3.3E-09 7.1E-14 86.0 10.2 93 84-181 80-173 (352)
326 cd01855 YqeH YqeH. YqeH is an 99.0 2.8E-09 6.1E-14 79.6 8.9 94 83-183 24-125 (190)
327 KOG1487|consensus 99.0 5.2E-09 1.1E-13 79.4 10.0 170 21-199 59-299 (358)
328 COG1703 ArgK Putative periplas 99.0 4.1E-09 8.9E-14 81.7 9.0 105 70-185 144-256 (323)
329 PF03308 ArgK: ArgK protein; 99.0 3.5E-10 7.5E-15 86.3 2.6 149 20-182 28-229 (266)
330 KOG1547|consensus 98.9 1.6E-08 3.5E-13 75.9 11.2 164 8-176 33-236 (336)
331 COG5258 GTPBP1 GTPase [General 98.9 7.3E-09 1.6E-13 82.7 9.9 160 17-180 113-336 (527)
332 PRK00098 GTPase RsgA; Reviewed 98.9 4.9E-09 1.1E-13 83.6 9.0 87 90-180 77-164 (298)
333 cd01854 YjeQ_engC YjeQ/EngC. 98.9 5.9E-09 1.3E-13 82.7 9.4 86 90-180 75-161 (287)
334 PF00503 G-alpha: G-protein al 98.9 6.4E-09 1.4E-13 86.1 9.6 115 68-182 234-389 (389)
335 COG5019 CDC3 Septin family pro 98.9 6.3E-08 1.4E-12 77.2 14.4 147 11-162 13-200 (373)
336 PRK12288 GTPase RsgA; Reviewed 98.9 2.5E-08 5.4E-13 80.9 10.5 88 91-181 118-206 (347)
337 KOG2655|consensus 98.9 1.2E-07 2.6E-12 76.1 13.9 157 20-184 20-215 (366)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 8.9E-09 1.9E-13 73.1 6.2 54 23-80 85-138 (141)
339 cd04178 Nucleostemin_like Nucl 98.8 1.9E-08 4.1E-13 73.7 7.2 57 19-79 115-171 (172)
340 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.9E-08 6.2E-13 71.8 7.1 56 20-79 101-156 (157)
341 KOG1143|consensus 98.8 4.9E-08 1.1E-12 77.8 8.7 155 20-178 166-383 (591)
342 KOG0099|consensus 98.8 7.2E-08 1.6E-12 73.4 9.0 122 68-189 200-375 (379)
343 KOG2486|consensus 98.8 1.1E-08 2.3E-13 78.5 4.6 157 17-181 132-314 (320)
344 TIGR03597 GTPase_YqeH ribosome 98.7 4.4E-08 9.6E-13 80.1 8.2 95 80-181 50-151 (360)
345 KOG1491|consensus 98.7 1.7E-08 3.7E-13 79.3 5.3 85 20-104 19-125 (391)
346 COG5192 BMS1 GTP-binding prote 98.7 1.6E-07 3.5E-12 78.6 10.5 112 17-140 65-177 (1077)
347 cd01858 NGP_1 NGP-1. Autoanti 98.7 8.7E-08 1.9E-12 69.3 8.1 91 90-183 5-95 (157)
348 cd01856 YlqF YlqF. Proteins o 98.7 5.5E-08 1.2E-12 71.3 6.8 58 19-80 113-170 (171)
349 KOG0460|consensus 98.7 1.4E-07 3E-12 74.4 9.2 143 19-165 52-217 (449)
350 TIGR00092 GTP-binding protein 98.7 7.1E-08 1.5E-12 78.2 7.8 83 22-104 3-108 (368)
351 cd01855 YqeH YqeH. YqeH is an 98.7 4.5E-08 9.8E-13 73.1 5.7 56 21-79 127-189 (190)
352 cd01849 YlqF_related_GTPase Yl 98.7 1.6E-07 3.4E-12 67.8 8.3 83 95-183 1-85 (155)
353 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.3E-07 2.7E-12 75.2 8.2 58 19-80 119-176 (287)
354 KOG0463|consensus 98.7 1E-07 2.2E-12 76.1 7.5 160 20-185 132-359 (641)
355 PF09547 Spore_IV_A: Stage IV 98.6 1.7E-06 3.7E-11 70.5 14.2 159 20-184 16-235 (492)
356 TIGR03596 GTPase_YlqF ribosome 98.6 1.1E-07 2.4E-12 75.2 7.2 58 19-80 116-173 (276)
357 KOG3887|consensus 98.6 2.8E-07 6E-12 69.5 8.9 162 21-186 27-205 (347)
358 COG1161 Predicted GTPases [Gen 98.6 8.5E-08 1.8E-12 77.2 6.4 57 20-80 131-187 (322)
359 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3.1E-12 68.0 6.9 56 20-79 100-155 (156)
360 KOG0466|consensus 98.6 2.6E-08 5.6E-13 77.4 2.8 158 19-182 36-240 (466)
361 KOG0467|consensus 98.6 2.2E-07 4.8E-12 80.0 8.2 119 15-137 3-135 (887)
362 KOG0085|consensus 98.6 3.3E-08 7.2E-13 73.9 2.3 127 65-191 194-357 (359)
363 KOG0448|consensus 98.6 1.8E-06 4E-11 73.8 12.8 145 18-166 106-309 (749)
364 cd01856 YlqF YlqF. Proteins o 98.5 2.9E-07 6.3E-12 67.5 6.8 89 87-183 13-101 (171)
365 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 4.3E-07 9.4E-12 64.4 7.0 75 89-169 7-83 (141)
366 cd01851 GBP Guanylate-binding 98.5 2.9E-06 6.4E-11 64.9 12.1 86 20-106 6-104 (224)
367 COG1618 Predicted nucleotide k 98.5 1.2E-05 2.7E-10 57.1 13.7 146 20-183 4-176 (179)
368 TIGR03348 VI_IcmF type VI secr 98.5 1.7E-06 3.7E-11 80.7 11.7 112 24-140 114-257 (1169)
369 KOG0464|consensus 98.5 5.3E-08 1.2E-12 78.6 1.4 121 16-140 32-168 (753)
370 KOG0447|consensus 98.4 6.3E-06 1.4E-10 69.1 12.9 137 18-156 305-509 (980)
371 cd01849 YlqF_related_GTPase Yl 98.4 6.2E-07 1.3E-11 64.7 6.0 57 19-79 98-154 (155)
372 TIGR03596 GTPase_YlqF ribosome 98.4 2.2E-06 4.8E-11 67.8 9.3 91 87-185 15-105 (276)
373 PRK01889 GTPase RsgA; Reviewed 98.4 2E-06 4.3E-11 70.4 9.1 83 91-179 110-193 (356)
374 PF03193 DUF258: Protein of un 98.4 4E-07 8.6E-12 65.5 4.5 59 22-83 36-100 (161)
375 PRK10416 signal recognition pa 98.4 3.4E-06 7.4E-11 67.8 10.2 154 21-186 114-313 (318)
376 PRK13796 GTPase YqeH; Provisio 98.3 2.9E-06 6.4E-11 69.6 8.9 84 91-181 66-157 (365)
377 TIGR00064 ftsY signal recognit 98.3 1.5E-05 3.3E-10 62.7 12.1 104 69-184 154-269 (272)
378 PRK09563 rbgA GTPase YlqF; Rev 98.3 4.1E-06 8.8E-11 66.6 8.9 91 87-185 18-108 (287)
379 PRK14974 cell division protein 98.3 1.2E-06 2.7E-11 70.6 6.0 105 70-186 223-333 (336)
380 KOG0459|consensus 98.3 7.2E-07 1.6E-11 71.9 4.5 162 15-176 73-279 (501)
381 TIGR03597 GTPase_YqeH ribosome 98.3 1.9E-06 4.2E-11 70.6 6.5 57 22-81 155-215 (360)
382 PRK13796 GTPase YqeH; Provisio 98.3 1.4E-06 3E-11 71.5 5.6 57 22-81 161-221 (365)
383 KOG1424|consensus 98.3 1.4E-06 3E-11 72.3 5.2 57 20-80 313-369 (562)
384 TIGR01425 SRP54_euk signal rec 98.3 1.5E-05 3.2E-10 66.2 11.2 134 21-164 100-273 (429)
385 COG1162 Predicted GTPases [Gen 98.2 1.4E-05 3E-10 62.9 10.2 96 84-182 70-166 (301)
386 PRK12288 GTPase RsgA; Reviewed 98.2 2.4E-06 5.2E-11 69.4 6.1 58 24-84 208-271 (347)
387 cd03112 CobW_like The function 98.2 6.9E-06 1.5E-10 59.4 7.8 21 24-44 3-23 (158)
388 PRK12289 GTPase RsgA; Reviewed 98.2 2.2E-06 4.7E-11 69.8 5.7 55 24-82 175-236 (352)
389 KOG0465|consensus 98.2 3.3E-06 7.1E-11 71.4 6.8 120 19-142 37-172 (721)
390 PRK13695 putative NTPase; Prov 98.2 6.2E-05 1.3E-09 55.3 12.5 48 125-182 125-172 (174)
391 KOG4273|consensus 98.2 4.1E-05 9E-10 58.3 10.8 158 22-185 5-224 (418)
392 TIGR00157 ribosome small subun 98.1 6.2E-06 1.3E-10 64.0 6.0 57 23-83 122-184 (245)
393 COG1162 Predicted GTPases [Gen 98.1 6.6E-06 1.4E-10 64.7 5.5 59 23-84 166-230 (301)
394 PF03266 NTPase_1: NTPase; In 98.0 3E-05 6.5E-10 56.6 7.5 135 23-171 1-163 (168)
395 COG3523 IcmF Type VI protein s 98.0 3E-05 6.4E-10 71.3 8.9 111 24-140 128-270 (1188)
396 KOG3859|consensus 98.0 2.2E-05 4.7E-10 60.7 6.9 119 17-140 38-190 (406)
397 PRK14722 flhF flagellar biosyn 98.0 6.3E-05 1.4E-09 61.6 9.6 146 22-173 138-322 (374)
398 PRK12727 flagellar biosynthesi 98.0 0.00017 3.8E-09 61.3 12.2 143 21-175 350-528 (559)
399 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.7E-05 3.8E-10 63.0 6.0 59 22-83 162-226 (287)
400 PRK00098 GTPase RsgA; Reviewed 98.0 2E-05 4.2E-10 63.0 6.1 58 22-82 165-228 (298)
401 cd03115 SRP The signal recogni 97.9 0.00025 5.5E-09 51.9 10.4 83 70-162 83-171 (173)
402 PRK05703 flhF flagellar biosyn 97.8 0.00015 3.2E-09 60.8 9.7 105 70-186 300-412 (424)
403 PF06858 NOG1: Nucleolar GTP-b 97.8 9.1E-05 2E-09 43.2 5.8 44 93-137 13-58 (58)
404 KOG2484|consensus 97.8 1.6E-05 3.6E-10 64.1 3.6 58 19-80 250-307 (435)
405 TIGR00959 ffh signal recogniti 97.8 0.00015 3.2E-09 60.6 9.2 92 70-173 183-280 (428)
406 cd03114 ArgK-like The function 97.8 0.00022 4.7E-09 51.0 8.3 58 69-137 91-148 (148)
407 PF00448 SRP54: SRP54-type pro 97.8 0.00037 8E-09 52.2 9.8 93 70-174 84-182 (196)
408 PRK14721 flhF flagellar biosyn 97.8 0.00079 1.7E-08 56.1 12.5 154 21-187 191-382 (420)
409 PRK00771 signal recognition pa 97.8 0.00032 7E-09 58.8 10.3 86 70-165 176-267 (437)
410 PRK14723 flhF flagellar biosyn 97.8 0.00021 4.5E-09 63.4 9.5 154 22-185 186-377 (767)
411 KOG2485|consensus 97.7 3.1E-05 6.6E-10 60.8 3.8 61 19-80 141-206 (335)
412 PRK11889 flhF flagellar biosyn 97.7 0.00017 3.7E-09 59.2 8.0 141 21-173 241-418 (436)
413 PRK10867 signal recognition pa 97.7 0.00022 4.8E-09 59.6 8.9 86 70-165 184-275 (433)
414 PRK06995 flhF flagellar biosyn 97.7 0.00016 3.5E-09 61.1 8.1 154 22-187 257-447 (484)
415 PRK11537 putative GTP-binding 97.7 0.00041 8.9E-09 55.9 10.0 85 70-164 91-186 (318)
416 COG1419 FlhF Flagellar GTP-bin 97.7 0.00037 8.1E-09 57.1 9.5 139 21-171 203-377 (407)
417 COG0523 Putative GTPases (G3E 97.7 0.0014 3.1E-08 52.8 12.5 144 24-176 4-194 (323)
418 cd02038 FleN-like FleN is a me 97.6 0.00033 7.2E-09 49.5 7.5 107 25-139 4-110 (139)
419 PRK12723 flagellar biosynthesi 97.6 0.0026 5.6E-08 52.6 13.1 154 21-186 174-367 (388)
420 KOG0469|consensus 97.6 0.00039 8.5E-09 58.1 8.1 115 20-138 18-162 (842)
421 cd02042 ParA ParA and ParB of 97.5 0.00062 1.3E-08 45.4 7.3 82 24-117 2-84 (104)
422 cd00009 AAA The AAA+ (ATPases 97.5 0.00077 1.7E-08 47.2 7.8 25 21-45 19-43 (151)
423 PRK12724 flagellar biosynthesi 97.5 0.00041 8.8E-09 57.5 7.1 138 22-171 224-398 (432)
424 PF11111 CENP-M: Centromere pr 97.5 0.011 2.5E-07 42.8 13.4 147 12-182 6-152 (176)
425 PF13207 AAA_17: AAA domain; P 97.5 0.00012 2.6E-09 50.2 3.1 22 23-44 1-22 (121)
426 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0014 3E-08 42.6 8.1 68 24-105 2-70 (99)
427 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00055 1.2E-08 47.8 6.2 23 23-45 24-46 (133)
428 PRK08118 topology modulation p 97.4 0.00015 3.3E-09 52.9 3.1 23 23-45 3-25 (167)
429 cd03111 CpaE_like This protein 97.4 0.00093 2E-08 44.8 6.7 99 28-135 7-106 (106)
430 PF13555 AAA_29: P-loop contai 97.3 0.00023 4.9E-09 42.6 3.0 24 23-46 25-48 (62)
431 PRK06731 flhF flagellar biosyn 97.3 0.00099 2.1E-08 52.4 7.4 139 22-172 76-251 (270)
432 PRK10646 ADP-binding protein; 97.3 0.0013 2.7E-08 47.1 7.2 23 23-45 30-52 (153)
433 PF13671 AAA_33: AAA domain; P 97.3 0.00019 4E-09 50.7 3.0 22 24-45 2-23 (143)
434 cd03110 Fer4_NifH_child This p 97.3 0.0025 5.4E-08 46.9 9.1 86 68-162 91-176 (179)
435 PRK07261 topology modulation p 97.3 0.0002 4.3E-09 52.5 3.1 22 23-44 2-23 (171)
436 KOG1534|consensus 97.3 0.00041 9E-09 51.7 4.7 22 22-43 4-25 (273)
437 PRK12726 flagellar biosynthesi 97.3 0.0011 2.3E-08 54.4 7.4 153 21-185 206-396 (407)
438 cd03222 ABC_RNaseL_inhibitor T 97.3 0.003 6.4E-08 46.5 9.2 23 23-45 27-49 (177)
439 COG0563 Adk Adenylate kinase a 97.3 0.00021 4.6E-09 52.6 3.0 23 22-44 1-23 (178)
440 PF02367 UPF0079: Uncharacteri 97.2 0.00067 1.4E-08 46.7 4.8 24 22-45 16-39 (123)
441 COG0194 Gmk Guanylate kinase [ 97.2 0.00023 5E-09 52.1 2.6 47 22-70 5-51 (191)
442 COG1116 TauB ABC-type nitrate/ 97.2 0.00034 7.4E-09 53.5 3.6 22 24-45 32-53 (248)
443 KOG2423|consensus 97.2 0.00013 2.8E-09 59.2 1.1 59 17-79 303-361 (572)
444 PF13521 AAA_28: AAA domain; P 97.2 0.00023 5.1E-09 51.6 2.3 22 23-44 1-22 (163)
445 PRK14737 gmk guanylate kinase; 97.2 0.00035 7.6E-09 51.9 3.0 24 22-45 5-28 (186)
446 cd02019 NK Nucleoside/nucleoti 97.2 0.00043 9.4E-09 42.6 3.0 21 24-44 2-22 (69)
447 PF00005 ABC_tran: ABC transpo 97.2 0.00041 8.8E-09 48.7 3.2 23 23-45 13-35 (137)
448 COG3845 ABC-type uncharacteriz 97.1 0.0031 6.6E-08 52.8 8.5 52 85-137 150-201 (501)
449 COG0802 Predicted ATPase or ki 97.1 0.0017 3.8E-08 45.8 6.2 59 21-81 25-85 (149)
450 PF03215 Rad17: Rad17 cell cyc 97.1 0.007 1.5E-07 52.0 10.7 38 7-45 32-69 (519)
451 PF05621 TniB: Bacterial TniB 97.1 0.0033 7.1E-08 49.8 7.9 106 17-136 57-190 (302)
452 cd00071 GMPK Guanosine monopho 97.1 0.00068 1.5E-08 47.8 3.5 21 24-44 2-22 (137)
453 cd02036 MinD Bacterial cell di 97.1 0.014 3.1E-07 42.6 10.8 84 71-161 64-147 (179)
454 PRK14738 gmk guanylate kinase; 97.0 0.00069 1.5E-08 51.2 3.7 26 20-45 12-37 (206)
455 smart00382 AAA ATPases associa 97.0 0.00063 1.4E-08 47.2 3.3 25 22-46 3-27 (148)
456 PF00004 AAA: ATPase family as 97.0 0.00059 1.3E-08 47.3 3.0 22 24-45 1-22 (132)
457 COG1136 SalX ABC-type antimicr 97.0 0.00079 1.7E-08 51.2 3.6 22 24-45 34-55 (226)
458 TIGR00235 udk uridine kinase. 97.0 0.00099 2.2E-08 50.4 3.9 26 19-44 4-29 (207)
459 KOG1533|consensus 96.9 0.00088 1.9E-08 50.8 3.4 68 70-139 97-176 (290)
460 COG1120 FepC ABC-type cobalami 96.9 0.00072 1.6E-08 52.5 3.0 21 24-44 31-51 (258)
461 PRK04195 replication factor C 96.9 0.014 3E-07 50.0 11.0 25 21-45 39-63 (482)
462 COG1126 GlnQ ABC-type polar am 96.9 0.0012 2.5E-08 49.7 3.8 23 23-45 30-52 (240)
463 PF03205 MobB: Molybdopterin g 96.9 0.00089 1.9E-08 47.3 3.1 23 23-45 2-24 (140)
464 PRK06217 hypothetical protein; 96.9 0.00088 1.9E-08 49.6 3.2 23 22-44 2-24 (183)
465 PF07728 AAA_5: AAA domain (dy 96.9 0.0008 1.7E-08 47.4 2.8 23 23-45 1-23 (139)
466 PRK03839 putative kinase; Prov 96.9 0.00085 1.9E-08 49.5 3.1 22 23-44 2-23 (180)
467 TIGR02322 phosphon_PhnN phosph 96.9 0.0008 1.7E-08 49.5 3.0 23 23-45 3-25 (179)
468 PRK10078 ribose 1,5-bisphospho 96.9 0.00091 2E-08 49.7 3.2 23 23-45 4-26 (186)
469 PF13238 AAA_18: AAA domain; P 96.9 0.00091 2E-08 46.1 3.0 21 24-44 1-21 (129)
470 PRK01889 GTPase RsgA; Reviewed 96.9 0.0014 2.9E-08 53.9 4.3 24 22-45 196-219 (356)
471 KOG0780|consensus 96.9 0.0013 2.9E-08 53.3 4.1 48 67-114 181-234 (483)
472 cd04178 Nucleostemin_like Nucl 96.9 0.003 6.6E-08 46.3 5.7 44 95-140 1-44 (172)
473 PRK14530 adenylate kinase; Pro 96.9 0.00096 2.1E-08 50.7 3.2 22 23-44 5-26 (215)
474 COG3839 MalK ABC-type sugar tr 96.9 0.0011 2.4E-08 53.5 3.6 22 24-45 32-53 (338)
475 cd03238 ABC_UvrA The excision 96.9 0.001 2.3E-08 48.9 3.2 21 22-42 22-42 (176)
476 cd01131 PilT Pilus retraction 96.9 0.0041 9E-08 46.7 6.5 22 24-45 4-25 (198)
477 PRK13949 shikimate kinase; Pro 96.9 0.001 2.2E-08 48.6 3.1 22 23-44 3-24 (169)
478 COG3840 ThiQ ABC-type thiamine 96.9 0.0013 2.8E-08 48.1 3.5 25 23-47 27-51 (231)
479 cd00820 PEPCK_HprK Phosphoenol 96.8 0.001 2.3E-08 44.5 2.8 20 23-42 17-36 (107)
480 cd02023 UMPK Uridine monophosp 96.8 0.00099 2.2E-08 49.9 2.9 22 24-45 2-23 (198)
481 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.001 2.3E-08 51.4 3.0 23 23-45 32-54 (254)
482 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.3E-08 49.2 3.0 22 22-43 4-25 (188)
483 TIGR03263 guanyl_kin guanylate 96.8 0.0011 2.4E-08 48.8 3.0 23 23-45 3-25 (180)
484 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0012 2.5E-08 50.3 3.2 23 23-45 32-54 (218)
485 cd01130 VirB11-like_ATPase Typ 96.8 0.0012 2.7E-08 49.0 3.2 25 21-45 25-49 (186)
486 KOG3929|consensus 96.8 0.00063 1.4E-08 52.2 1.5 92 13-107 37-133 (363)
487 KOG1424|consensus 96.8 0.0028 6.1E-08 53.2 5.3 80 81-167 163-244 (562)
488 PRK05416 glmZ(sRNA)-inactivati 96.8 0.018 3.9E-07 45.8 9.7 22 22-43 7-28 (288)
489 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0013 2.9E-08 49.7 3.2 23 23-45 29-51 (211)
490 PRK05480 uridine/cytidine kina 96.8 0.0015 3.3E-08 49.4 3.6 25 20-44 5-29 (209)
491 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0018 3.8E-08 48.9 3.8 23 23-45 28-50 (205)
492 TIGR00960 3a0501s02 Type II (G 96.7 0.0014 3E-08 49.9 3.2 23 23-45 31-53 (216)
493 COG0552 FtsY Signal recognitio 96.7 0.0034 7.3E-08 50.2 5.4 152 20-184 138-336 (340)
494 TIGR01166 cbiO cobalt transpor 96.7 0.0015 3.2E-08 48.7 3.2 23 23-45 20-42 (190)
495 COG1117 PstB ABC-type phosphat 96.7 0.0013 2.8E-08 49.4 2.8 22 23-44 35-56 (253)
496 TIGR03608 L_ocin_972_ABC putat 96.7 0.0019 4.2E-08 48.6 3.9 23 23-45 26-48 (206)
497 PF04665 Pox_A32: Poxvirus A32 96.7 0.0015 3.1E-08 50.4 3.2 26 20-45 12-37 (241)
498 COG4559 ABC-type hemin transpo 96.7 0.0017 3.7E-08 48.7 3.4 23 24-46 30-52 (259)
499 cd03264 ABC_drug_resistance_li 96.7 0.0013 2.9E-08 49.7 2.9 23 23-45 27-49 (211)
500 cd03261 ABC_Org_Solvent_Resist 96.7 0.0019 4.2E-08 49.8 3.9 23 23-45 28-50 (235)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.6e-42 Score=247.95 Aligned_cols=178 Identities=48% Similarity=0.904 Sum_probs=169.5
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
..++|.+||+|+|+.|+|||+|+.||.++.|...+..|+|+++..+++..+++.+.+++|||+|+++|+.+...++++|+
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCe-EEEEecCCCCCHHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVE-FFETSAKDNVNVKGV 174 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 174 (221)
+||+|||+++.+||.++..|+.++.++...++|.++|+||+|+.+.+.++.++++.|+..++++ ++++||+++.++++.
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHhhccccCCC
Q psy2300 175 FERLVDIICDKMSESLDSD 193 (221)
Q Consensus 175 ~~~i~~~~~~~~~~~~~~~ 193 (221)
|..|...+.+++.......
T Consensus 164 F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 164 FLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHHHHhcccCCCCC
Confidence 9999999998875444333
No 2
>KOG0078|consensus
Probab=100.00 E-value=1.1e-39 Score=236.65 Aligned_cols=176 Identities=56% Similarity=0.983 Sum_probs=169.3
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhcc
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYR 92 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 92 (221)
+...++++.+||+++|+++||||+|+.+|..+.|...+..|+|+++...++..++..+.+++|||+|++++..+...|++
T Consensus 4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred cccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence 34458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+++++|||+++..||+++..|+..+.++...++|.++|+||+|+...+.++.+..+.++..+|+.++++||++|.||+
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy2300 173 GVFERLVDIICDKMSE 188 (221)
Q Consensus 173 ~l~~~i~~~~~~~~~~ 188 (221)
+.|-.|.+.+.+++..
T Consensus 164 eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 164 EAFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHHhhcch
Confidence 9999999999987644
No 3
>KOG0094|consensus
Probab=100.00 E-value=1.9e-39 Score=231.43 Aligned_cols=171 Identities=39% Similarity=0.684 Sum_probs=160.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..-..+||+|+|+.++||||||+||+.+.|...|.+|+|+++...++.+.+..+++++|||+|+++|+.+...|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 33456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWD-NAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
+|+|||+++..||++...|+..+...... ++-+++|+||.||.+.++++.++....+++++..|.++||+.|.||.++|
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999999999877654 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy2300 176 ERLVDIICDKMS 187 (221)
Q Consensus 176 ~~i~~~~~~~~~ 187 (221)
..|...+.....
T Consensus 178 rrIaa~l~~~~~ 189 (221)
T KOG0094|consen 178 RRIAAALPGMEV 189 (221)
T ss_pred HHHHHhccCccc
Confidence 998877776654
No 4
>KOG0098|consensus
Probab=100.00 E-value=2e-39 Score=229.59 Aligned_cols=177 Identities=40% Similarity=0.740 Sum_probs=167.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
.+.+.+|++++|+.|+|||+|+.+|++..|.+.+..|+|+++....+++++..+++++|||+|++.+.++...|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+|+|||++.+++|.++..|+..+.++...+..++|++||+||...+.++.++.+.|++.+++.++++||++++|+++.|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCC
Q psy2300 177 RLVDIICDKMSESLDSD 193 (221)
Q Consensus 177 ~i~~~~~~~~~~~~~~~ 193 (221)
.+...+.+....-...+
T Consensus 162 nta~~Iy~~~q~g~~~~ 178 (216)
T KOG0098|consen 162 NTAKEIYRKIQDGVFDD 178 (216)
T ss_pred HHHHHHHHHHHhccccc
Confidence 99999988765444333
No 5
>KOG0092|consensus
Probab=100.00 E-value=2.7e-39 Score=230.60 Aligned_cols=172 Identities=39% Similarity=0.702 Sum_probs=162.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+|+|..++|||||+.||..+.|.....+|+|..+...++.+++..+.+.||||+|+++|..+...|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35799999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|||+++.+||..++.|+..+.+...++..+.+++||+||.+.+.+..++++.++...++.+|++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999887788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccc
Q psy2300 179 VDIICDKMSESL 190 (221)
Q Consensus 179 ~~~~~~~~~~~~ 190 (221)
.+.+........
T Consensus 163 a~~lp~~~~~~~ 174 (200)
T KOG0092|consen 163 AEKLPCSDPQER 174 (200)
T ss_pred HHhccCcccccc
Confidence 999887765444
No 6
>KOG0080|consensus
Probab=100.00 E-value=3.1e-38 Score=218.24 Aligned_cols=203 Identities=41% Similarity=0.683 Sum_probs=175.5
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
..+++.+||+++|+.|+|||||+.+|..+.|.+....|+|+++.++.+.+++..+.+.||||+|+++|+.+...|++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 34568899999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
++|+|||++.+++|..+..|+.++..++ .+++..++|+||+|.+..+.++.++...|++.+++-++++||++.+|+...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999999998887 456778999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q psy2300 175 FERLVDIICDKMSESLDSDPNLVAGPKGTRLTEQPQRNNPINPNCNC 221 (221)
Q Consensus 175 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 221 (221)
|+.+...|.+--....+ .+...+..-.+ .+..+...++-.+|.|
T Consensus 166 FeelveKIi~tp~l~~~--~n~~~~~~i~~-~p~~~~~~~~g~~Cs~ 209 (209)
T KOG0080|consen 166 FEELVEKIIETPSLWEE--GNSSAGLDIAS-DPDGEASAHQGGCCSC 209 (209)
T ss_pred HHHHHHHHhcCcchhhc--cCCcccccccc-CCCcccccccCCccCC
Confidence 99999998875433222 22322332222 2223445666778877
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1e-36 Score=228.94 Aligned_cols=165 Identities=50% Similarity=0.868 Sum_probs=151.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+.|+++|..|+|||||+++|..+.|...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899998888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
|++++++|+++..|+..+......+.|+++|+||+|+...+.+..++...+++.+ ++.+++|||++|.|++++|++|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999987776678999999999999877888888888888775 789999999999999999999999
Q ss_pred HHHHhh
Q psy2300 181 IICDKM 186 (221)
Q Consensus 181 ~~~~~~ 186 (221)
.+.+..
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 887653
No 8
>KOG0093|consensus
Probab=100.00 E-value=1.1e-37 Score=212.43 Aligned_cols=187 Identities=87% Similarity=1.314 Sum_probs=177.7
Q ss_pred CcchhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 5 GETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
....++.....+..++.+|++++|...+|||||+.++++..|...+..|.|+++..+++....+.+.+++|||.|++.|+
T Consensus 5 ~~~~~~~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryr 84 (193)
T KOG0093|consen 5 DSYGASKDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYR 84 (193)
T ss_pred ccCCCccccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhh
Confidence 34557788889999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEe
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETS 164 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (221)
.+...++++++++|++||+++.+||..++.|.-.++.++..+.|+|+++||||++..+.++.+..+.++..+|+.+|++|
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtS 164 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETS 164 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhc
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccccC
Q psy2300 165 AKDNVNVKGVFERLVDIICDKMSESLD 191 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~~~~~~~~ 191 (221)
|+.+.|+.++|+.+...+.+++.++.+
T Consensus 165 aK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 165 AKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999876654
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.3e-36 Score=226.28 Aligned_cols=169 Identities=40% Similarity=0.678 Sum_probs=155.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
.++.+||+|+|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45779999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
|+|||++++.+|+++..|+..+.... ++.|++||+||.|+.+.+.++.++++.+++..++.+++|||++|.|++++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997765 68999999999999887788889999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy2300 178 LVDIICDKMS 187 (221)
Q Consensus 178 i~~~~~~~~~ 187 (221)
|.+.+..+..
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9998876553
No 10
>KOG0394|consensus
Probab=100.00 E-value=1.8e-37 Score=219.29 Aligned_cols=169 Identities=36% Similarity=0.673 Sum_probs=157.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+++|++|+|||||++++.+.+|...+..|+|.++-.+.+.+++..+.+++|||+|+++|.++...+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCC----CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHhC-CeEEEEecCCCCCH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSW----DNAQVILVGNKCDMED--ERVISFERGKHLAESLG-VEFFETSAKDNVNV 171 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 171 (221)
+|||++++.+|+.+..|...+..... ...|+||++||+|+++ .++++...++.||...+ ++||++|||...|+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 99999999999999999999877663 4678999999999976 37899999999999886 79999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy2300 172 KGVFERLVDIICDKMS 187 (221)
Q Consensus 172 ~~l~~~i~~~~~~~~~ 187 (221)
++.|+.+.+..+....
T Consensus 167 ~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 167 DEAFEEIARRALANED 182 (210)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998887654
No 11
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4e-36 Score=226.67 Aligned_cols=168 Identities=34% Similarity=0.644 Sum_probs=150.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH-DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+..+ +..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888999988887777777 6788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS----WDNAQVILVGNKCDMEDERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 175 (221)
||++++.+|+.+..|+..+.... ..+.|++||+||+|+...+.+..++...+++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988876432 2578999999999997666778888999999988 589999999999999999
Q ss_pred HHHHHHHHHhhccc
Q psy2300 176 ERLVDIICDKMSES 189 (221)
Q Consensus 176 ~~i~~~~~~~~~~~ 189 (221)
++|++.+.+.....
T Consensus 161 ~~l~~~l~~~~~~~ 174 (201)
T cd04107 161 RFLVKNILANDKNL 174 (201)
T ss_pred HHHHHHHHHhchhh
Confidence 99999988765433
No 12
>KOG0086|consensus
Probab=100.00 E-value=5.5e-37 Score=210.47 Aligned_cols=207 Identities=36% Similarity=0.660 Sum_probs=181.3
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCC
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGA 94 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (221)
.+.+++.+|++++|+.|+|||.|+.+|..++|......|+|+++....+.+.++.+.++||||.|+++|++..+.|++++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
.+.++|||++++++|+.+.+|+........++.-+++++||.||.++++++..++..|+....+.+.++|+++|+|+++.
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCC----CCccccCCC-CCCCCCCCCCC
Q psy2300 175 FERLVDIICDKMSESLDSDPNLVAGPK----GTRLTEQPQ-RNNPINPNCNC 221 (221)
Q Consensus 175 ~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~c~~ 221 (221)
|-...+.+..+...-....++...+-. +..-...++ ....-++.|+|
T Consensus 163 Fl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C 214 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC 214 (214)
T ss_pred HHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence 999999888776544444445544432 222222222 23444778998
No 13
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.6e-35 Score=225.40 Aligned_cols=172 Identities=41% Similarity=0.763 Sum_probs=156.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 45688999999999999999999999999887888999999888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+|+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877656899999999999987777777888888888899999999999999999999
Q ss_pred HHHHHHHHhhcc
Q psy2300 177 RLVDIICDKMSE 188 (221)
Q Consensus 177 ~i~~~~~~~~~~ 188 (221)
+|++.+.+....
T Consensus 168 ~l~~~i~~~~~~ 179 (216)
T PLN03110 168 TILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHhhc
Confidence 999998876443
No 14
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.4e-35 Score=223.23 Aligned_cols=173 Identities=47% Similarity=0.878 Sum_probs=155.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 35689999999999999999999999998888889998888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++|||++++++|+.+..|+..+.... ...|++||+||+|+.....+..++...++...++.++++||++|.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999999987654 57899999999999877777778888888888999999999999999999999
Q ss_pred HHHHHHHhhccccC
Q psy2300 178 LVDIICDKMSESLD 191 (221)
Q Consensus 178 i~~~~~~~~~~~~~ 191 (221)
|.+.+.+.......
T Consensus 162 l~~~~~~~~~~~~~ 175 (199)
T cd04110 162 ITELVLRAKKDNLA 175 (199)
T ss_pred HHHHHHHhhhccCc
Confidence 99999877654433
No 15
>KOG0087|consensus
Probab=100.00 E-value=8.3e-36 Score=215.60 Aligned_cols=179 Identities=42% Similarity=0.758 Sum_probs=169.5
Q ss_pred hhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccC
Q psy2300 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRG 93 (221)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (221)
....+++.+||+++|++++|||-|+.||..+.|..+..+|+|+++....+.++++.+..+||||+|+++|+.+...|+++
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
+.++++|||++.+.+|+++..|+.++..+...+.++++|+||+||.+.+.+..++.+.+++..++.++++||..+.|+++
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCC
Q psy2300 174 VFERLVDIICDKMSESLDS 192 (221)
Q Consensus 174 l~~~i~~~~~~~~~~~~~~ 192 (221)
.|+.++..|.+...+....
T Consensus 167 aF~~~l~~I~~~vs~k~~~ 185 (222)
T KOG0087|consen 167 AFERVLTEIYKIVSKKQLD 185 (222)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999888776555433
No 16
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=6e-35 Score=213.89 Aligned_cols=164 Identities=36% Similarity=0.741 Sum_probs=150.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999998888888888888777777888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
||++++.+|+.+..|+..+.....++.|+++|+||+|+.+.+.++.++...+++..+++++++||++|.|++++|.++.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766668999999999999887778888899999988999999999999999999999998
Q ss_pred HHHH
Q psy2300 181 IICD 184 (221)
Q Consensus 181 ~~~~ 184 (221)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 17
>KOG0079|consensus
Probab=100.00 E-value=2.7e-36 Score=205.85 Aligned_cols=169 Identities=49% Similarity=0.892 Sum_probs=161.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
.++..++.+++|++|+|||+|+.+|..+.|...|..|+|+++.+.++.+++..+.++|||++|++.|+.+...++++.++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+++|||+++.+||.+...|+..+...+ +..|-++|+||.|.++.+.+..++++.|+...++.+|++|++..+|++.+|.
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 999999999999999999999998876 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy2300 177 RLVDIICDKM 186 (221)
Q Consensus 177 ~i~~~~~~~~ 186 (221)
-|.+.+.+..
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999888776
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2e-34 Score=220.04 Aligned_cols=172 Identities=27% Similarity=0.530 Sum_probs=151.6
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
++....+||+++|+.|+|||+|+++|..+.|...+.||.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|
T Consensus 8 ~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 8 QPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred cCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCc
Confidence 34456899999999999999999999999999899999886664 45777888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-eEE
Q psy2300 96 GFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED------------ERVISFERGKHLAESLGV-EFF 161 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 161 (221)
++|+|||++++.+|.++ ..|+..+.... ++.|++||+||+|+.+ .+.++.++.+.+++.+++ .|+
T Consensus 87 ~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 87 AVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 99999999999999985 78999987765 5789999999999964 356888999999999998 699
Q ss_pred EEecCCCC-CHHHHHHHHHHHHHHhhccc
Q psy2300 162 ETSAKDNV-NVKGVFERLVDIICDKMSES 189 (221)
Q Consensus 162 ~~Sa~~~~-gi~~l~~~i~~~~~~~~~~~ 189 (221)
+|||++|+ |++++|..++..+.++...+
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~~~~~ 194 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNKLSPP 194 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHhcccc
Confidence 99999998 89999999999888765443
No 19
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1e-34 Score=212.83 Aligned_cols=166 Identities=55% Similarity=0.989 Sum_probs=151.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999998888999998888888888888899999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|||++++.+|..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+.+++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987765689999999999998776777788888888888999999999999999999999
Q ss_pred HHHHHH
Q psy2300 179 VDIICD 184 (221)
Q Consensus 179 ~~~~~~ 184 (221)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998765
No 20
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.1e-34 Score=216.89 Aligned_cols=184 Identities=32% Similarity=0.538 Sum_probs=153.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
||+++|.+|+|||||+++|+.+.+...+.++.+..+ ......++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999988777777776444 3445567777899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 103 VTNEESFTSIQDWITQIKTYS---WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
++++.+|..+..|+..+.... ..+.|+++|+||+|+...+.+...+...++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999998886653 25789999999999977777777778888888899999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q psy2300 180 DIICDKMSESLDSDPNLVAGPKGTRLTEQPQRNNPINPNC 219 (221)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 219 (221)
+.+.++..... .+..+++...+|++..|
T Consensus 160 ~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~ 187 (190)
T cd04144 160 RALRQQRQGGQ------------GPKGGPTKKKEKKKRKC 187 (190)
T ss_pred HHHHHhhcccC------------CCcCCCCCcccccccCc
Confidence 98877665432 11344455566666666
No 21
>KOG0088|consensus
Probab=100.00 E-value=9.8e-36 Score=205.43 Aligned_cols=169 Identities=38% Similarity=0.738 Sum_probs=160.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
..+.|||+++|...+|||||+-+++.++|...+.+|..-++..+++.+.+....+.||||+|+++|..+-..|+++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 35789999999999999999999999999999999988888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++|||++|++||+.+.+|...+........-+++|+||+||++.+.++.++++.+++.-|..|+++||+.+.||.++|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999998887778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy2300 178 LVDIICDKM 186 (221)
Q Consensus 178 i~~~~~~~~ 186 (221)
+...+.+..
T Consensus 170 Lt~~MiE~~ 178 (218)
T KOG0088|consen 170 LTAKMIEHS 178 (218)
T ss_pred HHHHHHHHh
Confidence 999888775
No 22
>KOG0091|consensus
Probab=100.00 E-value=3e-35 Score=203.96 Aligned_cols=203 Identities=37% Similarity=0.690 Sum_probs=173.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEe-CCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-HDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..|.++++|+|+.-+|||+|++.|..+++..-..||.|+++....+.+ ++..+.+++|||+|+++++++...|++++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 468999999999999999999999999999999999999998777766 5567999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSW--DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
+++|||++++.||+++..|+..-..+.. ..+.+.+|+.|+||...++++.++++.+++.+++.++++|+++|.|+++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999998766652 34558899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCC---CCCCccccCCCCCCCCCCCCCC
Q psy2300 175 FERLVDIICDKMSESLDSDPNLVAG---PKGTRLTEQPQRNNPINPNCNC 221 (221)
Q Consensus 175 ~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~c~~ 221 (221)
|.-|.+.+.....+-+-.-+.-=.+ ..+..++....+.++++++| |
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~-C 213 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQ-C 213 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCC-C
Confidence 9999999988876532221111111 34444555566778888887 8
No 23
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.3e-34 Score=212.99 Aligned_cols=165 Identities=45% Similarity=0.859 Sum_probs=150.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..++..+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999987778889888888888888888899999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|++++.+|..+..|+..+........|+++++||+|+.+...+..++...++...+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987765678999999999998777777788888888888999999999999999999999999
Q ss_pred HHHhh
Q psy2300 182 ICDKM 186 (221)
Q Consensus 182 ~~~~~ 186 (221)
+.++.
T Consensus 161 ~~~~~ 165 (188)
T cd04125 161 IIKRL 165 (188)
T ss_pred HHHHh
Confidence 87654
No 24
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.7e-34 Score=218.05 Aligned_cols=169 Identities=33% Similarity=0.562 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|+|||||+++|..+.|.. +.++.+..+..... ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 56777765554433 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHhC-----
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED-------------------ERVISFERGKHLAESLG----- 157 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 157 (221)
|++++++|.++..|+..+......+.|++||+||+|+.+ .+.++.++...+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888777665556799999999999965 57788899999998876
Q ss_pred ---------CeEEEEecCCCCCHHHHHHHHHHHHHHhhccccCCCCC
Q psy2300 158 ---------VEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPN 195 (221)
Q Consensus 158 ---------~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~ 195 (221)
++|++|||++|.||+++|..+++.+.+...+.....++
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~ 202 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANR 202 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 68999999999999999999999998877665554443
No 25
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.6e-34 Score=210.48 Aligned_cols=164 Identities=49% Similarity=0.957 Sum_probs=150.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999998888888888888888888888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
||++++++|..+..|+..+......+.|+++++||+|+.....+..++...++...+++++++||++|.|++++|++|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998776568999999999999877778888888999988999999999999999999999998
Q ss_pred HHHH
Q psy2300 181 IICD 184 (221)
Q Consensus 181 ~~~~ 184 (221)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd01869 162 EIKK 165 (166)
T ss_pred HHHh
Confidence 7753
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.1e-34 Score=212.19 Aligned_cols=159 Identities=32% Similarity=0.678 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+++|||||+.++..+.|..++.+|.+..+ ...+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888999987665 445667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2300 102 DVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMEDER----------VISFERGKHLAESLGV-EFFETSAKDNV 169 (221)
Q Consensus 102 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 169 (221)
|++++++|+++ ..|+..+.... .+.|++||+||+|+.+.+ .++.++...+++..+. .+++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 67999987665 579999999999996542 4778889999999997 69999999999
Q ss_pred CHHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDII 182 (221)
Q Consensus 170 gi~~l~~~i~~~~ 182 (221)
||+++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999865
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2e-34 Score=213.57 Aligned_cols=163 Identities=26% Similarity=0.572 Sum_probs=146.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+++|+.++|||||+++|..+.|...+.||.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35789999999999999999999999998888899876553 56777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-eEEEEe
Q psy2300 99 LMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED------------ERVISFERGKHLAESLGV-EFFETS 164 (221)
Q Consensus 99 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 164 (221)
+|||++++.+|+++ ..|+..+.... ++.|++||+||+|+.+ .+.++.++.+.+++.+++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 68999987765 6799999999999954 345888999999999996 899999
Q ss_pred cCCCCC-HHHHHHHHHHHHH
Q psy2300 165 AKDNVN-VKGVFERLVDIIC 183 (221)
Q Consensus 165 a~~~~g-i~~l~~~i~~~~~ 183 (221)
|++|.| |+++|..+++.+.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999988654
No 28
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4.7e-34 Score=208.95 Aligned_cols=163 Identities=90% Similarity=1.375 Sum_probs=148.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888888887777777777899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|++++.+++.+..|+..+........|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999977665678999999999998777777778888888888999999999999999999999887
Q ss_pred HHH
Q psy2300 182 ICD 184 (221)
Q Consensus 182 ~~~ 184 (221)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 654
No 29
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.4e-34 Score=210.94 Aligned_cols=164 Identities=30% Similarity=0.513 Sum_probs=146.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|.+|+|||||++++..+.++..+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888888887444 34566788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
||++++.+|+.+..|...+.... ..+.|+++|+||+|+.+.+.++.++...+++..++++++|||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988887654 35799999999999987777888889999998999999999999999999999999
Q ss_pred HHHHHh
Q psy2300 180 DIICDK 185 (221)
Q Consensus 180 ~~~~~~ 185 (221)
+.+.+.
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 887764
No 30
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.6e-34 Score=212.39 Aligned_cols=167 Identities=49% Similarity=0.943 Sum_probs=149.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC----------CeEEEEEEEeCCCcccccccch
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH----------DKRVKLQIWDTAGQERYRTITT 88 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 88 (221)
++.+||+++|++|||||||++++.++.+...+.++.+.++....+... +..+.+.+||++|++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888988877776665543 3468899999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCC
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
.+++++|++++|||++++++|.++..|+..+.... ..+.|+++|+||+|+.+.+.++.++...++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987654 35789999999999987777788888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2300 168 NVNVKGVFERLVDIICDK 185 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~ 185 (221)
|.|++++|++|.+.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988764
No 31
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-33 Score=214.06 Aligned_cols=168 Identities=42% Similarity=0.785 Sum_probs=149.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEe-CCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-HDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
+.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3589999999999999999999999988877888888887777766 455789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
+|||++++++|+++..|+..+.... ....|++||+||+|+.+...+..++...+++.++++++++||++|.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999987654 245788999999999877778888889999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy2300 178 LVDIICDKMS 187 (221)
Q Consensus 178 i~~~~~~~~~ 187 (221)
|++.+.++..
T Consensus 161 l~~~~~~~~~ 170 (211)
T cd04111 161 LTQEIYERIK 170 (211)
T ss_pred HHHHHHHHhh
Confidence 9998887754
No 32
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.3e-34 Score=212.40 Aligned_cols=166 Identities=47% Similarity=0.837 Sum_probs=147.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
+||+|+|.+|+|||||+++|.++.+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998753 5677777777766777788889999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
+|++++.+++++..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876568999999999999766667777888888888899999999999999999999999
Q ss_pred HHHHhhc
Q psy2300 181 IICDKMS 187 (221)
Q Consensus 181 ~~~~~~~ 187 (221)
.+.+...
T Consensus 161 ~~~~~~~ 167 (191)
T cd04112 161 ELKHRKY 167 (191)
T ss_pred HHHHhcc
Confidence 9887753
No 33
>KOG0081|consensus
Probab=100.00 E-value=1.4e-36 Score=209.78 Aligned_cols=205 Identities=42% Similarity=0.818 Sum_probs=178.2
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC---------CeEEEEEEEeCCCcccccc
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH---------DKRVKLQIWDTAGQERYRT 85 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~ 85 (221)
..++++.||.+.+|+.|+|||+++.++.++.|.+...+|.|+++..+.+..+ +..+.+++|||+|+++|++
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 4567899999999999999999999999999999999999999987776542 2348899999999999999
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEe
Q psy2300 86 ITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETS 164 (221)
Q Consensus 86 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (221)
+...+++.|-+++++||+++..||-++++|+..+.-+. ..+.-+|+++||+|+++.+.++.+++..++.++++|||++|
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 99999999999999999999999999999999998777 45566999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccccCCC--CCCCCCCCCCccccCCCCCCCCCCCC
Q psy2300 165 AKDNVNVKGVFERLVDIICDKMSESLDSD--PNLVAGPKGTRLTEQPQRNNPINPNC 219 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~c 219 (221)
|-+|.|+++..+.+...+++++....++. |........-|+..++..+++...+|
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie~~v~~s~~p~~~~~~~~g~~~~e~~~~~~~c~nC 219 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIEQCVEKSEIPLLVTRSNCGHLDGEEPCERKNCRNC 219 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHHHhhcccchhhhccccccCCCCCChhhhcccCC
Confidence 99999999999999999999887666554 33333334446777777777666666
No 34
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=212.75 Aligned_cols=169 Identities=39% Similarity=0.781 Sum_probs=153.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
+++.+||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..++..+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45779999999999999999999999988887888888888888888888888999999999999988899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++|||++++.+++.+..|+..+........|+++|+||+|+.+.+.++.++.+.+++.++++++++||+++.|++++|++
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887665568999999999999887778888899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy2300 178 LVDIICDKM 186 (221)
Q Consensus 178 i~~~~~~~~ 186 (221)
+++.+.++.
T Consensus 163 l~~~~~~~~ 171 (210)
T PLN03108 163 TAAKIYKKI 171 (210)
T ss_pred HHHHHHHHh
Confidence 999887654
No 35
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.3e-34 Score=213.09 Aligned_cols=166 Identities=36% Similarity=0.614 Sum_probs=146.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..+||+|+|.+|+|||||++++..+.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999988777778777555 4566778888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+...+..++...++..++++++++||++|.|++++|++|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999998886653 3578999999999997766677777888888888999999999999999999999
Q ss_pred HHHHHHhh
Q psy2300 179 VDIICDKM 186 (221)
Q Consensus 179 ~~~~~~~~ 186 (221)
++.+.+..
T Consensus 163 ~~~l~~~~ 170 (189)
T PTZ00369 163 VREIRKYL 170 (189)
T ss_pred HHHHHHHh
Confidence 99887654
No 36
>KOG0095|consensus
Probab=100.00 E-value=4.4e-35 Score=200.41 Aligned_cols=171 Identities=39% Similarity=0.734 Sum_probs=161.5
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
+++++.+||+++|..|+|||.|+++|..+.|++....|+|.++.++++.++++.+.++||||.|+++|+++...|++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
++|+|||++...+|.-+..|+..+..+....+--|+|+||.|+.+.++++....++|+......++++||+...|++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999988888899999999999988999888999999988889999999999999999
Q ss_pred HHHHHHHHHhh
Q psy2300 176 ERLVDIICDKM 186 (221)
Q Consensus 176 ~~i~~~~~~~~ 186 (221)
..+.-.+...+
T Consensus 162 ~~~a~rli~~a 172 (213)
T KOG0095|consen 162 LDLACRLISEA 172 (213)
T ss_pred HHHHHHHHHHH
Confidence 99887766554
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=6.1e-34 Score=207.52 Aligned_cols=160 Identities=48% Similarity=0.877 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|+|||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899988888788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|++++.+|+.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++..+.+++++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999877765679999999999998777788888999998888999999999999999999999864
No 38
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.5e-33 Score=206.90 Aligned_cols=167 Identities=41% Similarity=0.802 Sum_probs=151.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
+++.+||+|+|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 35679999999999999999999999998888788888888888888888888999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++|+|++++.++..+..|+..+.....++.|+++|+||.|+.+...++.++...++...++.++++||+++.|++++|.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998776678999999999999876677888888888888999999999999999999999
Q ss_pred HHHHHHH
Q psy2300 178 LVDIICD 184 (221)
Q Consensus 178 i~~~~~~ 184 (221)
+++.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988754
No 39
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.8e-34 Score=209.89 Aligned_cols=161 Identities=26% Similarity=0.552 Sum_probs=143.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|++|+|||||+++|..+.|+..+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998888898876653 5677788889999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-eEEEEecC
Q psy2300 101 YDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED------------ERVISFERGKHLAESLGV-EFFETSAK 166 (221)
Q Consensus 101 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 166 (221)
||++++++|+++ ..|+..+.... ++.|+++|+||+|+.+ .+.++.++..++++.+++ .|++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999987765 5899999999999954 245788999999999997 89999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q psy2300 167 DNVN-VKGVFERLVDIIC 183 (221)
Q Consensus 167 ~~~g-i~~l~~~i~~~~~ 183 (221)
+|+| ++++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998544
No 40
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.7e-33 Score=214.30 Aligned_cols=164 Identities=34% Similarity=0.570 Sum_probs=148.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCC-eEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-KRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
+||+++|.+|+|||||+++|....+...+.++.+.++....+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888899999888887777754 468999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhCC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYSW---DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
||++++++|+++..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877642 35689999999999877778888888999989999999999999999999999
Q ss_pred HHHHHHHh
Q psy2300 178 LVDIICDK 185 (221)
Q Consensus 178 i~~~~~~~ 185 (221)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988765
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.1e-33 Score=207.08 Aligned_cols=162 Identities=34% Similarity=0.664 Sum_probs=147.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+|+|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998889999998888888888888899999999999999889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCC-----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSW-----DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+...++.++...++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877653 4689999999999975566677788888888889999999999999999999
Q ss_pred HHHHHHH
Q psy2300 177 RLVDIIC 183 (221)
Q Consensus 177 ~i~~~~~ 183 (221)
+|++.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 42
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.8e-33 Score=210.41 Aligned_cols=162 Identities=28% Similarity=0.553 Sum_probs=141.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|..++|||||+.+|..+.|...+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999998888899876553 4456788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhC-CeEEEEecC
Q psy2300 101 YDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLG-VEFFETSAK 166 (221)
Q Consensus 101 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 166 (221)
||++++.+|+++. .|+..+.... .+.|++||+||.|+.+.. .++.++.+.+++.++ ++++++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 5888776554 579999999999996542 356678888998888 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy2300 167 DNVNVKGVFERLVDIICD 184 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~~~~ 184 (221)
+|+|++++|+++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987754
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.2e-33 Score=205.34 Aligned_cols=163 Identities=42% Similarity=0.796 Sum_probs=148.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
+.+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999999888888999888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|+|++++.++..+..|+..+......+.|+++|+||.|+.+.+.+..++...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887655799999999999987777777888888888889999999999999999999998
Q ss_pred HHH
Q psy2300 180 DII 182 (221)
Q Consensus 180 ~~~ 182 (221)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 764
No 44
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.7e-33 Score=211.97 Aligned_cols=169 Identities=25% Similarity=0.529 Sum_probs=145.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+|+|++|||||||+.+|..+.|+..+.||.+..+. ..+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998889999876654 46677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEecCC
Q psy2300 102 DVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETSAKD 167 (221)
Q Consensus 102 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (221)
|++++++|+.+. .|...+.... ++.|++||+||+|+.+. ..++.++...+++.+++ .|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999995 4777665543 68999999999999542 13677889999999995 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHhhccccCC
Q psy2300 168 NVN-VKGVFERLVDIICDKMSESLDS 192 (221)
Q Consensus 168 ~~g-i~~l~~~i~~~~~~~~~~~~~~ 192 (221)
+.+ |+++|..++...+.+.......
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~~~~~ 185 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHRQLRR 185 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCCcccc
Confidence 985 9999999999887765544333
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-33 Score=204.42 Aligned_cols=163 Identities=46% Similarity=0.814 Sum_probs=146.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
++.+||+|+|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999999888888888888888888888887789999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~ 177 (221)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+. .++++||++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999776656899999999999987777777888888888875 7899999999999999999
Q ss_pred HHHH
Q psy2300 178 LVDI 181 (221)
Q Consensus 178 i~~~ 181 (221)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.4e-33 Score=212.94 Aligned_cols=174 Identities=25% Similarity=0.499 Sum_probs=149.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999998889999998888888877777899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+. .+..++. .+.+..++.|+++||++|.|++++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999987664 67999999999999643 3344444 6677778899999999999999999999
Q ss_pred HHHHHHhhccccCCCCC
Q psy2300 179 VDIICDKMSESLDSDPN 195 (221)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (221)
++.+.+.........++
T Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (219)
T PLN03071 168 ARKLAGDPNLHFVESPA 184 (219)
T ss_pred HHHHHcCcchhcccccc
Confidence 99887664433333333
No 47
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.7e-33 Score=204.17 Aligned_cols=161 Identities=41% Similarity=0.775 Sum_probs=152.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
||+|+|++++|||||+++|.++.++..+.++.+.+.....+..++..+.+.+||++|++.+..++..++..+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999899999999999999999999999999999888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 103 VTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
++++++|+.+..|+..+........|++|++||.|+.+.+.++.++.+.+++.++.+|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999888866799999999999988788999999999999999999999999999999999999887
Q ss_pred H
Q psy2300 183 C 183 (221)
Q Consensus 183 ~ 183 (221)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 48
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.6e-32 Score=205.84 Aligned_cols=165 Identities=32% Similarity=0.654 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
+||+|+|.+|+|||||+++|+.+.+.. .+.++.+.++....+.+++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 5778888888777888888889999999999999999898899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE----RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
||++++.+++.+..|+..+.... .+.|+++|+||+|+... ..+..++...++...+++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999988999887653 47999999999998532 34555667788888889999999999999999999
Q ss_pred HHHHHHHHhhc
Q psy2300 177 RLVDIICDKMS 187 (221)
Q Consensus 177 ~i~~~~~~~~~ 187 (221)
+|.+.+.+...
T Consensus 160 ~i~~~~~~~~~ 170 (193)
T cd04118 160 KVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHhcc
Confidence 99999876653
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.7e-33 Score=207.05 Aligned_cols=162 Identities=24% Similarity=0.532 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|..|+|||||+++|..+.|...+.+|.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998888788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC-----CcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED-----ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
|++++.+|.++..|+..+........| ++|+||+|+.. ......++.+.+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998776544566 67899999842 111123556778888889999999999999999999
Q ss_pred HHHHHHHH
Q psy2300 177 RLVDIICD 184 (221)
Q Consensus 177 ~i~~~~~~ 184 (221)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988864
No 50
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7e-33 Score=204.50 Aligned_cols=159 Identities=30% Similarity=0.552 Sum_probs=139.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|.+|+|||||+++|..+.|...+.|+.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888898876554 3456677889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CeEEEEecC
Q psy2300 101 YDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLG-VEFFETSAK 166 (221)
Q Consensus 101 ~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 166 (221)
||++++++|+.+.. |+..+.... ++.|++||+||+|+.+. +.+..++.+.+++..+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 99999999999974 988887654 57999999999998543 4567778888888887 689999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy2300 167 DNVNVKGVFERLVDI 181 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~ 181 (221)
+|.|++++|+.++..
T Consensus 159 tg~~v~~~f~~~~~~ 173 (175)
T cd01874 159 TQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998874
No 51
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=5.6e-33 Score=202.60 Aligned_cols=160 Identities=38% Similarity=0.665 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|||||||++++..+.+...+.++.+ ......+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765 334456667788889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.++.+++++||++|.|++++|++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999988886653 357999999999999776667777777888888889999999999999999999987
Q ss_pred HH
Q psy2300 181 II 182 (221)
Q Consensus 181 ~~ 182 (221)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=6.6e-33 Score=202.59 Aligned_cols=162 Identities=36% Similarity=0.644 Sum_probs=142.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|.+|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999999888777777776554 35566777788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+...+..++...+++..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988886543 46799999999999987777777777888888889999999999999999999998
Q ss_pred HHHH
Q psy2300 180 DIIC 183 (221)
Q Consensus 180 ~~~~ 183 (221)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 7654
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.4e-33 Score=206.03 Aligned_cols=164 Identities=27% Similarity=0.546 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH-DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
+||+|+|.+|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||+|++.+..++..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999888888887766543 34444 6678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHH
Q psy2300 101 YDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDE----RVISFERGKHLAESLGV-EFFETSAKDNVNVKGV 174 (221)
Q Consensus 101 ~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 174 (221)
||++++.+|+++.. |+..+.... .+.|+++|+||+|+... +.+..++...++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 99999999999964 887776543 57999999999998543 34667788888988888 9999999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy2300 175 FERLVDIICDKMS 187 (221)
Q Consensus 175 ~~~i~~~~~~~~~ 187 (221)
|+.+++.+.....
T Consensus 159 f~~l~~~~~~~~~ 171 (187)
T cd04132 159 FDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHHhhhh
Confidence 9999998886653
No 54
>KOG0097|consensus
Probab=100.00 E-value=4.7e-33 Score=188.97 Aligned_cols=205 Identities=32% Similarity=0.655 Sum_probs=177.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
.+.+.+|-+++|+-|+|||.|+..|...+|-..-..++++++....+.+.+..+.+++|||.|+++|+...+.+++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45679999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
.+.|||++.+..+.++..|+..-.....++..+++++||.|++..+.+..++++.|++..++.++++|+++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCccccC----CCCCCCCCCCCCC
Q psy2300 177 RLVDIICDKMSESLDSDPNLVAGPKGTRLTEQ----PQRNNPINPNCNC 221 (221)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~c~~ 221 (221)
...+.+.+....-...-+....+.......++ .+....++..|+|
T Consensus 167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 98888888765444333333333333322222 2334555777988
No 55
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=8.9e-33 Score=201.28 Aligned_cols=160 Identities=43% Similarity=0.756 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999998999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|++++.++..+..|+..+.....++.|+++++||.|+.....+..++...++...++.++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999997777778888888999899999999999999999999999875
No 56
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.3e-32 Score=200.76 Aligned_cols=163 Identities=52% Similarity=0.905 Sum_probs=148.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|++++.+++.+..|+..+..+...+.|+++++||+|+.....+..+....+++..+++++++|+++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888766689999999999997766677788888888889999999999999999999999988
Q ss_pred HHH
Q psy2300 182 ICD 184 (221)
Q Consensus 182 ~~~ 184 (221)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.4e-32 Score=200.10 Aligned_cols=160 Identities=28% Similarity=0.593 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888899888887777777778899999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|+++++++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..++.++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC-GNIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 9999999999999999997765 38999999999999743 233 33455666677899999999999999999999988
Q ss_pred HHH
Q psy2300 182 ICD 184 (221)
Q Consensus 182 ~~~ 184 (221)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 865
No 58
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=6e-32 Score=205.37 Aligned_cols=171 Identities=46% Similarity=0.757 Sum_probs=148.3
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCC
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGA 94 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (221)
..+....+||+|+|.+|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34556789999999999999999999999876 45678888888888888888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHH-HHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 95 MGFILMYDVTNEESFTSIQD-WITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
|++|+|||++++++|..+.. |...+.... ..+.|+++|+||+|+.....+..++...++...++.|+++||++|.|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999976 666665433 3468999999999998777777778888888888999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2300 173 GVFERLVDIICDKM 186 (221)
Q Consensus 173 ~l~~~i~~~~~~~~ 186 (221)
++|++|.+.+.+..
T Consensus 167 ~l~~~l~~~~~~~~ 180 (211)
T PLN03118 167 QCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987653
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.5e-32 Score=200.18 Aligned_cols=159 Identities=40% Similarity=0.731 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC--CeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH--DKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
+||+++|.+|+|||||+++++++.+...+.++.+.++....+... +..+.+.+||+||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888888776666666 667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|+|+++++++..+..|+..+.... .+.|+++|+||+|+.....++.++...+++..+++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999886544 5899999999999977777777888888998999999999999999999999987
Q ss_pred HH
Q psy2300 180 DI 181 (221)
Q Consensus 180 ~~ 181 (221)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 54
No 60
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3e-32 Score=200.21 Aligned_cols=162 Identities=30% Similarity=0.586 Sum_probs=142.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
||+++|.+|||||||++++..+.|...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988999999988888888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 103 VTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERV--ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
+++++++..+..|+..+.... ....|+++|+||+|+..... ...++...+++.++.+++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999875543 34578999999999965433 234556677777888999999999999999999998
Q ss_pred HHHHH
Q psy2300 180 DIICD 184 (221)
Q Consensus 180 ~~~~~ 184 (221)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 87753
No 61
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.1e-32 Score=203.49 Aligned_cols=161 Identities=27% Similarity=0.554 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
.||+|+|++|+|||||+++|..+.+...+.++.+..+. ..+..++..+.+.+||++|++.+..++..++..+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888776543 44556777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhC-CeEEEEecCC
Q psy2300 102 DVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLG-VEFFETSAKD 167 (221)
Q Consensus 102 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 167 (221)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...++...+ +.|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 4888887654 589999999999996543 245566777777776 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy2300 168 NVNVKGVFERLVDIICD 184 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~ 184 (221)
|.|++++|++|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988863
No 62
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3.8e-32 Score=198.06 Aligned_cols=160 Identities=27% Similarity=0.550 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|||||||++++..+.+.+.+.++.+.+........++..+.+.+|||+|++.+..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777777777777777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|++++.++.++..|+..+.... .+.|+++|+||+|+... . ..+...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999986643 57899999999998432 1 234456666678899999999999999999999998
Q ss_pred HHHh
Q psy2300 182 ICDK 185 (221)
Q Consensus 182 ~~~~ 185 (221)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.6e-32 Score=199.26 Aligned_cols=162 Identities=35% Similarity=0.656 Sum_probs=144.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
+..+||+++|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999999988888888888877778888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS----WDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKG 173 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 173 (221)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+. .+.+..++.+++++.++. +++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 9999999999999999998876543 2468999999999996 445677888888888874 899999999999999
Q ss_pred HHHHHHHH
Q psy2300 174 VFERLVDI 181 (221)
Q Consensus 174 l~~~i~~~ 181 (221)
+|+++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99998864
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.3e-32 Score=199.16 Aligned_cols=159 Identities=28% Similarity=0.526 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|+|||||+++++++.+...+.++.+.++ ...+..+...+.+.+||++|++.+..++..++..+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777777776444 344555667789999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS---WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999988776543 2578999999999997766777777778888888899999999999999999998
Q ss_pred HHH
Q psy2300 179 VDI 181 (221)
Q Consensus 179 ~~~ 181 (221)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 65
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.5e-32 Score=203.40 Aligned_cols=167 Identities=25% Similarity=0.513 Sum_probs=144.4
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCh
Q psy2300 27 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNE 106 (221)
Q Consensus 27 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~ 106 (221)
+|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888889999899888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 107 ESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 107 ~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.+|..+..|+..+.... .+.|+++|+||+|+... .+..+. ..++...++.|++|||++|.||.++|.+|++.+.+..
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~ 157 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999997764 58999999999998543 344443 4677778899999999999999999999999887764
Q ss_pred ccccCCCCCC
Q psy2300 187 SESLDSDPNL 196 (221)
Q Consensus 187 ~~~~~~~~~~ 196 (221)
...+...+..
T Consensus 158 ~~~~~~~~~~ 167 (200)
T smart00176 158 NLEFVAMPAL 167 (200)
T ss_pred cceeccCccc
Confidence 4334444444
No 66
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.7e-32 Score=198.41 Aligned_cols=161 Identities=32% Similarity=0.599 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999998777777664 44556677788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
||++++.++.++..|+..+.... ..+.|+++|+||+|+.....+...+...++...+++++++||++|.|++++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988886653 35899999999999976666666677788877888999999999999999999998
Q ss_pred HHH
Q psy2300 180 DII 182 (221)
Q Consensus 180 ~~~ 182 (221)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 654
No 67
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.8e-32 Score=200.39 Aligned_cols=158 Identities=29% Similarity=0.598 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|||||||+.+++.+.|..++.++.+.. ....+..++..+.+.+|||+|++.+..++..++.++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 799999999999999999999999988888887643 3445567788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEecCC
Q psy2300 102 DVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETSAKD 167 (221)
Q Consensus 102 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (221)
|++++++|..+. .|+..+.... ++.|++||+||+|+.+. +.++.++...+++.++. .+++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 5888776654 57999999999999543 24778888899998884 999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy2300 168 NVNVKGVFERLVDI 181 (221)
Q Consensus 168 ~~gi~~l~~~i~~~ 181 (221)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998763
No 68
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=8.1e-32 Score=196.52 Aligned_cols=162 Identities=43% Similarity=0.753 Sum_probs=147.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998777788888888888888888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
+|+++++++..+..|+..+......+.|+++++||+|+........++...++...++.++++||++|.|+.++|++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776568999999999999766667777888888888899999999999999999999988
Q ss_pred HH
Q psy2300 181 II 182 (221)
Q Consensus 181 ~~ 182 (221)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 69
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=6e-32 Score=196.82 Aligned_cols=160 Identities=41% Similarity=0.747 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888887789999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|++++++|+.+..|+..+......+.|+++++||+|+.+......++...+++..++.++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876654469999999999997666777788888888888999999999999999999999875
No 70
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=5.7e-32 Score=197.56 Aligned_cols=161 Identities=38% Similarity=0.635 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+|+|++|+|||||++++.+..+...+.++.+. ........++..+.+.+|||||++.+..++..++..+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999887766666653 33455666777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
|++++++++.+..|...+.... ..+.|+++|+||+|+...+.+..++...+++..+.+++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999888876543 347899999999999776667777888888888899999999999999999999988
Q ss_pred HHH
Q psy2300 181 IIC 183 (221)
Q Consensus 181 ~~~ 183 (221)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=8e-32 Score=196.07 Aligned_cols=160 Identities=34% Similarity=0.602 Sum_probs=138.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999988777777776443 45566777778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ +.....+...++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999998888887654 35789999999999966 34556777788888889999999999999999999998
Q ss_pred HHH
Q psy2300 180 DII 182 (221)
Q Consensus 180 ~~~ 182 (221)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 654
No 72
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=9e-32 Score=197.81 Aligned_cols=162 Identities=39% Similarity=0.739 Sum_probs=145.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc-ccchhhccCCcEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR-TITTAYYRGAMGFIL 99 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~vi~ 99 (221)
.+||+++|++|+|||||+++++...+...+.++.+.++....+..++..+.+.+||++|++.+. .++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999888888888888888888888888999999999998876 578888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCC---CCCHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD---NVNVKGVF 175 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l~ 175 (221)
|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887654 35799999999999988777888888888888889999999999 89999999
Q ss_pred HHHHHHH
Q psy2300 176 ERLVDII 182 (221)
Q Consensus 176 ~~i~~~~ 182 (221)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9988765
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.2e-31 Score=195.74 Aligned_cols=161 Identities=35% Similarity=0.610 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|.+|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999887666666665333 44456777788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
+|++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..++...+++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988886643 35789999999999987766777778888888889999999999999999999998
Q ss_pred HHH
Q psy2300 180 DII 182 (221)
Q Consensus 180 ~~~ 182 (221)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.8e-31 Score=200.42 Aligned_cols=164 Identities=23% Similarity=0.332 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------cchhhccC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT--------ITTAYYRG 93 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 93 (221)
+||+|+|.+|||||||+++|.++.+...+.|+.+.+.....+..++..+.+.+|||+|...+.. .....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998888888887666666667788888999999999654321 12234789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCeEEEEecCCCC
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYS---WDNAQVILVGNKCDMEDERVISFERGKHLAE-SLGVEFFETSAKDNV 169 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 169 (221)
+|++|+|||++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++. ..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999988886653 3679999999999997766666666666654 457899999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy2300 170 NVKGVFERLVDIICDK 185 (221)
Q Consensus 170 gi~~l~~~i~~~~~~~ 185 (221)
|++++|+.+++.+..+
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999877644
No 75
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=2e-31 Score=206.05 Aligned_cols=160 Identities=26% Similarity=0.424 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+|+|.+|+|||||+++|+.+.+...+.+|.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998877777775 455566677888899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh---------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCeEEEEecCCCCCH
Q psy2300 102 DVTNEESFTSIQDWITQIKTY---------SWDNAQVILVGNKCDMEDERVISFERGKHLAES-LGVEFFETSAKDNVNV 171 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 171 (221)
|++++++|+++..|+..+... ...+.|+++|+||+|+...+.+..++...++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 224789999999999976566777777777654 3578999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 172 KGVFERLVDII 182 (221)
Q Consensus 172 ~~l~~~i~~~~ 182 (221)
+++|++|.+..
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.8e-31 Score=193.95 Aligned_cols=160 Identities=34% Similarity=0.606 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD--SFTSAFVSTVGIDFKVKTVFRH-DKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
+||+++|++|||||||++++..+ .++..+.++.+.++....+..+ +..+.+.+||++|++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888888888777766664 45689999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+...+...+.+.+....+++++++||++|.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887764 579999999999997766677666677777778899999999999999999999
Q ss_pred HHHH
Q psy2300 179 VDII 182 (221)
Q Consensus 179 ~~~~ 182 (221)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 77
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=6.3e-31 Score=191.35 Aligned_cols=161 Identities=41% Similarity=0.722 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|+|||||+++|.+..+...+.++.+.+.....+...+..+.+.+||++|++.+..++..++..+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887666666666666666766777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|++++++++.+..|+..+......+.|+++++||+|+.....+..++...+....+..++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887765679999999999998766677777778888888999999999999999999999876
Q ss_pred H
Q psy2300 182 I 182 (221)
Q Consensus 182 ~ 182 (221)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=8.1e-31 Score=192.80 Aligned_cols=165 Identities=40% Similarity=0.720 Sum_probs=144.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877888888887777888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS----WDNAQVILVGNKCDMEDERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 176 (221)
|++++.+++.+..|...+.... ..+.|+++|+||+|+........++...+++..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 9999999999888887765443 2378999999999997655666777778888877 6999999999999999999
Q ss_pred HHHHHHHHhh
Q psy2300 177 RLVDIICDKM 186 (221)
Q Consensus 177 ~i~~~~~~~~ 186 (221)
++.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999888764
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.7e-31 Score=194.27 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=139.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
.+.+||+++|.+|||||||+++|+++.+. ..+.+|.+..+....+..++..+.+.+||++|++.+..++..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 36899999999999999999999999988 78888888887777777788778899999999999988899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~ 176 (221)
++|+|++++.+++.+..|+..+... .+.|+++|+||+|+.+.......+...+++.+++ .++++||++|.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998888766432 3799999999999965544333445667777776 479999999999999999
Q ss_pred HHHHHHH
Q psy2300 177 RLVDIIC 183 (221)
Q Consensus 177 ~i~~~~~ 183 (221)
.|.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998765
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=4.7e-31 Score=194.56 Aligned_cols=159 Identities=31% Similarity=0.650 Sum_probs=137.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDV 103 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~ 103 (221)
|+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+|||+|++.+..++..++..+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777765444 34566677888999999999999999999999999999999999
Q ss_pred CChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2300 104 TNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLGV-EFFETSAKDNV 169 (221)
Q Consensus 104 ~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 169 (221)
+++++|+.+.. |+..+.... ++.|+++|+||+|+.... .++.++...+++..+. .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 99999999864 888887654 589999999999986532 3667778888988886 99999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDIICD 184 (221)
Q Consensus 170 gi~~l~~~i~~~~~~ 184 (221)
|++++|+.+++.+++
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987753
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=9e-31 Score=190.66 Aligned_cols=159 Identities=48% Similarity=0.852 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999999887778888888888777777777889999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
|++++.+++.+..|+..+..+. ..+.|+++++||+|+... ....++...++...+++++++|+++|.|++++++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-EVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999887764 468999999999999743 44567788888888999999999999999999999887
Q ss_pred H
Q psy2300 181 I 181 (221)
Q Consensus 181 ~ 181 (221)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 82
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6e-31 Score=196.90 Aligned_cols=158 Identities=26% Similarity=0.471 Sum_probs=129.5
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCccccceee-eeEEEE--------EEeCCeEEEEEEEeCCCcccccc
Q psy2300 21 MFKLLIIGNSSVGKTSFLF-RYADDS-----FTSAFVSTVGI-DFKVKT--------VFRHDKRVKLQIWDTAGQERYRT 85 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 85 (221)
.+||+++|..|+|||||+. ++.+.. +...+.||.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999995 665543 44566777752 322222 24677889999999999875 3
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCC-------------------CcccC
Q psy2300 86 ITTAYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED-------------------ERVIS 145 (221)
Q Consensus 86 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~ 145 (221)
+...+++++|++|+|||++++.+|+++. .|+..+.... .+.|+++|+||+|+.. .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999997 4988887654 5789999999999864 36788
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 146 FERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
.++.+.+++.++++|++|||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998764
No 83
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=2.5e-30 Score=189.75 Aligned_cols=164 Identities=42% Similarity=0.764 Sum_probs=144.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988887777788887777777888888889999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....+.+.....++++|+++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999988877665679999999999997766666666677777667889999999999999999999
Q ss_pred HHHH
Q psy2300 179 VDII 182 (221)
Q Consensus 179 ~~~~ 182 (221)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8754
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=2e-30 Score=190.25 Aligned_cols=161 Identities=34% Similarity=0.598 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||++|++.+..++..++..++++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999998877777777644 3566667778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|++++++++.+..|...+.... ..+.|+++++||.|+.+.+.+..++...+++..+ ++++++||++|.|++++|+++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988886543 4579999999999998777777777777888877 7999999999999999999998
Q ss_pred HHHH
Q psy2300 180 DIIC 183 (221)
Q Consensus 180 ~~~~ 183 (221)
..+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7553
No 85
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=2.1e-30 Score=197.90 Aligned_cols=164 Identities=25% Similarity=0.391 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhcc-CCcEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYR-GAMGFIL 99 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~vi~ 99 (221)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 55666665567777778888889999999999982 23444566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887653 3579999999999998777777777788888888999999999999999999999
Q ss_pred HHHHHHhhc
Q psy2300 179 VDIICDKMS 187 (221)
Q Consensus 179 ~~~~~~~~~ 187 (221)
++.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 998875443
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=2e-30 Score=187.69 Aligned_cols=158 Identities=53% Similarity=0.907 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++++|||||++++.+..+...+.++.+.++....+..+...+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888898888888888878889999999999998889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|++++++++.+..|+..+......+.|+++++||+|+........++...++...+.+++++|++++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998887656799999999999975566677888888888889999999999999999999986
No 87
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=1.8e-30 Score=188.48 Aligned_cols=153 Identities=27% Similarity=0.444 Sum_probs=128.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|+.|+|||||+.++..+.|...+.++ +..+ ...+.+++..+.+.+||++|++. ..++..+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887665544 3233 46677788888999999999974 24678899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDME--DERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
|++++++|+++..|+..+.... ..+.|+++|+||.|+. ..+.++.++...+++.. ++.|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999987664 3578999999999984 35677778888888776 489999999999999999999
Q ss_pred HHHH
Q psy2300 178 LVDI 181 (221)
Q Consensus 178 i~~~ 181 (221)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 88
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.5e-30 Score=190.29 Aligned_cols=160 Identities=33% Similarity=0.507 Sum_probs=135.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc-ccccchhhccCCcEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER-YRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~vi~v~ 101 (221)
||+++|++|+|||||+++++...+...+.++....+ ...+..++..+.+.+||+||++. .......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999887666666654333 45556677888999999999885 3445667889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC-CCHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN-VNVKGVFERL 178 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~l~~~i 178 (221)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.++.++...+++..+.+|+++||++| .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887654 357999999999999776777778888888888999999999999 5999999999
Q ss_pred HHHHH
Q psy2300 179 VDIIC 183 (221)
Q Consensus 179 ~~~~~ 183 (221)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 87654
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=3.9e-30 Score=189.59 Aligned_cols=157 Identities=34% Similarity=0.597 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|+|||||++++.++.+..++.++.. +.....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999998887777753 444456777777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-eEEEEecCC
Q psy2300 102 DVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED------------ERVISFERGKHLAESLGV-EFFETSAKD 167 (221)
Q Consensus 102 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (221)
|++++.+|+.+. .|+..+.... .+.|+++++||+|+.. .+.+..++...+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 5888776532 4799999999999853 345677788889988887 899999999
Q ss_pred CCCHHHHHHHHHH
Q psy2300 168 NVNVKGVFERLVD 180 (221)
Q Consensus 168 ~~gi~~l~~~i~~ 180 (221)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=3.8e-30 Score=189.74 Aligned_cols=159 Identities=32% Similarity=0.585 Sum_probs=135.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|+|||||+++|..+.+...+.++.... ....+..++..+.+.+||++|++.+..++..++..+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999999877776766533 3345666777888999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEecCC
Q psy2300 102 DVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETSAKD 167 (221)
Q Consensus 102 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (221)
|++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+. ..++.++...+++..+. .+++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 488777655 478999999999998543 25667778888888886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy2300 168 NVNVKGVFERLVDII 182 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~ 182 (221)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 91
>KOG0083|consensus
Probab=99.97 E-value=3.4e-32 Score=182.90 Aligned_cols=162 Identities=44% Similarity=0.818 Sum_probs=150.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy2300 25 LIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDV 103 (221)
Q Consensus 25 ~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~ 103 (221)
.++|++++|||.|+-++.++.|. ....+|.|+++..+.+.+++..+.+++|||.|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999998887764 46788999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 104 TNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 104 ~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
.+..||++.+.|+..+.++....+.+.+++||+|+...+.+..++.+.+++.+++|++++||++|.|++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998778889999999999888888889999999999999999999999999999999999887
Q ss_pred Hhh
Q psy2300 184 DKM 186 (221)
Q Consensus 184 ~~~ 186 (221)
+..
T Consensus 161 k~~ 163 (192)
T KOG0083|consen 161 KLK 163 (192)
T ss_pred Hhc
Confidence 654
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.7e-29 Score=184.17 Aligned_cols=162 Identities=38% Similarity=0.623 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|+|||||+++++...+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999988777666665433 344566778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.........+...+....+++++++||++|.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999888887653 358999999999999764455666777788888899999999999999999999988
Q ss_pred HHHH
Q psy2300 181 IICD 184 (221)
Q Consensus 181 ~~~~ 184 (221)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=4e-29 Score=181.46 Aligned_cols=158 Identities=39% Similarity=0.662 Sum_probs=138.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
||+++|++|+|||||++++++..+...+.++.. +........++..+.+.+||+||++.+..++..++..+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887677666665 4555566666667899999999999888888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 103 VTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
.++++++.++..|...+..... ...|+++++||+|+........++...+....+.+++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999998888876653 589999999999998766777788888888888899999999999999999999875
No 94
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.3e-29 Score=186.61 Aligned_cols=160 Identities=19% Similarity=0.351 Sum_probs=125.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+++|.++||||||++++..+.+. .+.||.+.+.. .+. ...+.+.+||++|++.+..+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999987774 45677775543 332 24578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-----CeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAESLG-----VEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~ 172 (221)
+|+|+++++++..+..++..+... ...+.|++|++||+|+++.. ..++......... +.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998888777665332 23579999999999996643 3333333322111 246689999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2300 173 GVFERLVDIICDK 185 (221)
Q Consensus 173 ~l~~~i~~~~~~~ 185 (221)
++|+||.+.+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887764
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.4e-29 Score=185.69 Aligned_cols=154 Identities=21% Similarity=0.362 Sum_probs=122.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..+||+++|.+|+|||||+++|..+.+. .+.++.+.++. .+.. ..+.+.+||++|++.+..++..++..+|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999987764 45677665554 2322 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----hCCeEEEEecCCCCCHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAES-----LGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 173 (221)
|+|++++.++.++..|+..+... ...+.|++||+||+|+.+. +..++...+... ..+.++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999999888877665432 2357899999999999643 345555555421 224789999999999999
Q ss_pred HHHHHHH
Q psy2300 174 VFERLVD 180 (221)
Q Consensus 174 l~~~i~~ 180 (221)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=9.1e-29 Score=182.52 Aligned_cols=159 Identities=31% Similarity=0.597 Sum_probs=132.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
.||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999988777777765443 35566778889999999999999888888899999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEecCC
Q psy2300 102 DVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETSAKD 167 (221)
Q Consensus 102 d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (221)
|++++++|+.+.. |+..+.... .+.|+++|+||+|+... ..+...+.+.++...+. .+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999998864 877776543 57999999999998542 22345566777777764 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy2300 168 NVNVKGVFERLVDII 182 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~ 182 (221)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=4.4e-29 Score=185.57 Aligned_cols=164 Identities=22% Similarity=0.378 Sum_probs=130.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEe-CCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-HDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
.+||+++|++|||||||++++..+.+... .++.+.+.....+.. ++..+.+.+|||+|++.+..++..++..+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998887543 577666665555544 3356889999999999998999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------hCCeEEEEecCCCCCHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAES------LGVEFFETSAKDNVNVK 172 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~ 172 (221)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++...+... .+++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999988888887765432 347999999999998643 333444433321 12468899999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy2300 173 GVFERLVDIICDKMS 187 (221)
Q Consensus 173 ~l~~~i~~~~~~~~~ 187 (221)
+++++|.+.+.+.+.
T Consensus 160 ~l~~~l~~~l~~~~~ 174 (183)
T cd04152 160 EGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876653
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.4e-29 Score=186.93 Aligned_cols=160 Identities=29% Similarity=0.427 Sum_probs=132.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
||+++|.+|+|||||+++|+...+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666654 3444556667777899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCC-CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 103 VTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMED-ERVISFERGKHLAE-SLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..+....... ..+.+++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888876543 5799999999999965 34444444443333 3457899999999999999999999
Q ss_pred HHHH
Q psy2300 180 DIIC 183 (221)
Q Consensus 180 ~~~~ 183 (221)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 99
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2.1e-28 Score=181.49 Aligned_cols=164 Identities=35% Similarity=0.575 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
.||+|+|.+|+|||||++++....+...+.++....+ ...+..++..+.+.+||+||++.+..++..++..++++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888766667665433 344556667788999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
|+++..+++.+..|+..+.... ..+.|+++++||+|+...+.+..++...++...+.+++++||+++.|+.++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999877775543 357899999999999766666666667777777889999999999999999999999
Q ss_pred HHHHhh
Q psy2300 181 IICDKM 186 (221)
Q Consensus 181 ~~~~~~ 186 (221)
.+.+..
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 887554
No 100
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.8e-28 Score=182.90 Aligned_cols=164 Identities=31% Similarity=0.538 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
.||+|+|++|+|||||++++..+.+...+.++....+ ...+..++..+.+.+||++|++.+......++..+|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998887766666654333 335556777788999999999888877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2300 102 DVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED----------ERVISFERGKHLAESLGV-EFFETSAKDNV 169 (221)
Q Consensus 102 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 169 (221)
|+++.+++..+. .|+..+.... +..|+++|+||+|+.+ .+.+..++...+++..+. .+++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999997 4888886654 5799999999999854 234556778888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHHhhc
Q psy2300 170 NVKGVFERLVDIICDKMS 187 (221)
Q Consensus 170 gi~~l~~~i~~~~~~~~~ 187 (221)
|++++|+++.+.++..++
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999988766553
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=7.6e-30 Score=186.42 Aligned_cols=152 Identities=20% Similarity=0.312 Sum_probs=124.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDV 103 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~ 103 (221)
|+++|++|+|||||+++|.+..+...+.|+.+... . .++...+.+.+||++|++.+..++..+++.+|++++|+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999988777788877543 2 2344568899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHhCCeEEEEecCC------CCCHHH
Q psy2300 104 TNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISF----ERGKHLAESLGVEFFETSAKD------NVNVKG 173 (221)
Q Consensus 104 ~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~~ 173 (221)
+++.++.....|+..+.... .+.|+++|+||+|+...+.+.. .+...+++..++.++++||++ ++|+.+
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999999988888775443 6899999999999976543321 123445555678899998888 999999
Q ss_pred HHHHHHH
Q psy2300 174 VFERLVD 180 (221)
Q Consensus 174 l~~~i~~ 180 (221)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998874
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=6.6e-29 Score=184.36 Aligned_cols=161 Identities=20% Similarity=0.342 Sum_probs=125.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+++|++|+|||||++++..+.+.. +.+|.+..+. .+.. ..+.+.+||++|++.+..++..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998887754 5677765543 2322 4578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|+++++++.....++..+... .....|++||+||.|+.+.. ..++...... ...+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999888766665322 23468999999999996532 2233222211 112357799999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2300 173 GVFERLVDIICDKM 186 (221)
Q Consensus 173 ~l~~~i~~~~~~~~ 186 (221)
++|++|.+.+.+++
T Consensus 168 e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 168 EGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888775
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=5.9e-29 Score=182.64 Aligned_cols=156 Identities=21% Similarity=0.382 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
||+++|.++||||||+++|.+..+. .+.+|.+..+. .+.. ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999998764 36677665443 2322 45789999999999998899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC------CeEEEEecCCCCCHHHHH
Q psy2300 103 VTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLG------VEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 175 (221)
++++.++.++..|+..+.... ..+.|++|++||+|+.+. ++.++...++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988888875432 346899999999999643 45555655553222 368899999999999999
Q ss_pred HHHHHHHHHh
Q psy2300 176 ERLVDIICDK 185 (221)
Q Consensus 176 ~~i~~~~~~~ 185 (221)
+||.+.+...
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998876554
No 104
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=3.2e-28 Score=185.45 Aligned_cols=168 Identities=27% Similarity=0.546 Sum_probs=145.6
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCC
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGA 94 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (221)
+.+....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..+
T Consensus 3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 34556779999999999999999999998888888999999888888887788889999999999999988888899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
+++++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.. ... +...++...++.++++|+++|.|++++
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999998887654 578999999999986432 332 334566777889999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2300 175 FERLVDIICDK 185 (221)
Q Consensus 175 ~~~i~~~~~~~ 185 (221)
|.+|++.+...
T Consensus 160 f~~ia~~l~~~ 170 (215)
T PTZ00132 160 FLWLARRLTND 170 (215)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.2e-29 Score=184.42 Aligned_cols=152 Identities=19% Similarity=0.371 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.++||||||++++..+.+. .+.|+.+.... .+.. ..+.+.+||++|++.+..++..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999888775 46777765543 2332 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
|++++.++..+..|+..+... ...+.|++|++||+|+.+.. ..++...... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877665332 22468999999999996532 2222222211 123467899999999999999
Q ss_pred HHHHH
Q psy2300 176 ERLVD 180 (221)
Q Consensus 176 ~~i~~ 180 (221)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.4e-29 Score=185.69 Aligned_cols=156 Identities=18% Similarity=0.338 Sum_probs=121.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..+||+++|.+|+|||||++++..+.+. .+.||.+..+.. ... ..+.+.+||++|++.+..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3599999999999999999999877764 456777655543 322 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 173 (221)
|+|++++.+++....|+..+... ...+.|++||+||+|+.+.. +.++...... ...+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999988877776432 23578999999999996532 2233322221 1123577899999999999
Q ss_pred HHHHHHHHH
Q psy2300 174 VFERLVDII 182 (221)
Q Consensus 174 l~~~i~~~~ 182 (221)
+|+||.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999998764
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.9e-28 Score=179.01 Aligned_cols=157 Identities=36% Similarity=0.652 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|++|+|||||+++|.+..+...+.++.... .......++..+.+.+||+||++.+...+...++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 689999999999999999999999866666666533 3445566778889999999999988888888889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2300 102 DVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDER-----------VISFERGKHLAESLGV-EFFETSAKDN 168 (221)
Q Consensus 102 d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 168 (221)
|++++.++..... |+..+.... .+.|+++|+||+|+.... .+..++...+....+. +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999887765 777776554 489999999999986543 3356677778888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVD 180 (221)
Q Consensus 169 ~gi~~l~~~i~~ 180 (221)
.|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 108
>KOG4252|consensus
Probab=99.96 E-value=6.1e-31 Score=185.34 Aligned_cols=184 Identities=30% Similarity=0.565 Sum_probs=169.8
Q ss_pred hhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhh
Q psy2300 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAY 90 (221)
Q Consensus 11 ~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 90 (221)
..|.+.+++..||++++|..++||||+|+++|.+.|...+..++++++....+.+..+.+++.+||++|++++..+...|
T Consensus 10 ~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAy 89 (246)
T KOG4252|consen 10 MAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAY 89 (246)
T ss_pred CCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHH
Confidence 45667778889999999999999999999999999999999999999998888888888899999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVN 170 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (221)
+++|.+.++||+.+|+.||+....|.+.+.... ...|.++|-||+|+.++..+...+.+.+++..+..++.+|++...|
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~N 168 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFN 168 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 999999999999999999999999999986654 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCC
Q psy2300 171 VKGVFERLVDIICDKMSESLDSDPN 195 (221)
Q Consensus 171 i~~l~~~i~~~~~~~~~~~~~~~~~ 195 (221)
+.++|.+|++.+.+++..+.+..++
T Consensus 169 V~~vF~YLaeK~~q~~kq~~~~~~~ 193 (246)
T KOG4252|consen 169 VMHVFAYLAEKLTQQKKQSLNANER 193 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhchh
Confidence 9999999999999988776655533
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.5e-28 Score=181.15 Aligned_cols=155 Identities=23% Similarity=0.333 Sum_probs=122.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
+..++|+++|++|+|||||+++|.+..+ ..+.++.+.. ...+..+ .+.+.+||+||++.+..++..++..+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4568999999999999999999998754 4456666633 3334343 478999999999988888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..++...+.. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999999888877776432 23589999999999996543 3445554443 234689999999999999
Q ss_pred HHHHHHHH
Q psy2300 173 GVFERLVD 180 (221)
Q Consensus 173 ~l~~~i~~ 180 (221)
++|+++.+
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 110
>KOG0395|consensus
Probab=99.96 E-value=4.4e-28 Score=180.56 Aligned_cols=166 Identities=37% Similarity=0.563 Sum_probs=152.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..+||+++|.+|+|||+|+.+|....|...+.||++ +.+.+.+.++++.+.+.|+||+|++.+..+...++..++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 6666777788889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
||+++++.||+.+..++..+.+.. ....|+++|+||+|+...+.++.++...++..++++++++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999984433 4567999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy2300 179 VDIICDKM 186 (221)
Q Consensus 179 ~~~~~~~~ 186 (221)
.+.+....
T Consensus 161 ~r~~~~~~ 168 (196)
T KOG0395|consen 161 VREIRLPR 168 (196)
T ss_pred HHHHHhhh
Confidence 99887744
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1e-27 Score=175.60 Aligned_cols=160 Identities=24% Similarity=0.356 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+++|.+|||||||+++|..+.++..+.++.. .+ .....+++..+.+.+|||+|.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999988655333221 11 233344567789999999999887777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHh-C-CeEEEEecCCCCCHHHHHH
Q psy2300 102 DVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDERVIS--FERGKHLAESL-G-VEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 102 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~l~~ 176 (221)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..... .++...+.... + .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 5888776654 489999999999996654321 12233333333 2 3799999999999999999
Q ss_pred HHHHHHHH
Q psy2300 177 RLVDIICD 184 (221)
Q Consensus 177 ~i~~~~~~ 184 (221)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887754
No 112
>KOG0393|consensus
Probab=99.96 E-value=1.7e-28 Score=179.18 Aligned_cols=165 Identities=34% Similarity=0.598 Sum_probs=149.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH-DKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
..+|++|||+..+|||+|+..+..+.|+..+.||.. +-+...+.++ +..+.+.+|||+|++.|..++...++.+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 569999999999999999999999999999999998 6666667774 89999999999999999999988899999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEe
Q psy2300 99 LMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETS 164 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 164 (221)
+||++.++.||+++.. |+..+..++ ++.|+|+|++|.||.++ ..++.++...+++.+|. .|++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999877 999998887 89999999999999632 36777888999999994 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhh
Q psy2300 165 AKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~~~ 186 (221)
|++..|+.++|+..+.......
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 9999999999999888877654
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3.4e-28 Score=177.12 Aligned_cols=152 Identities=18% Similarity=0.339 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+|+++|.+|||||||+++|.+..+ ...+.++.+..... +. ...+.+.+||+||++.+..++..++..+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 45567777654432 22 24578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYS---WDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 173 (221)
|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++...... ...+.++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888877764431 2579999999999996542 2222222211 1124589999999999999
Q ss_pred HHHHHHH
Q psy2300 174 VFERLVD 180 (221)
Q Consensus 174 l~~~i~~ 180 (221)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=3.2e-28 Score=178.35 Aligned_cols=153 Identities=17% Similarity=0.289 Sum_probs=120.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
+|+++|.+|||||||++++.+. +...+.++.+.... .+.. ..+.+.+||++|++.+..++..+++.+|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 66677788775533 3333 44789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCH-HH---HHHHHHHhC--CeEEEEecCCC------C
Q psy2300 103 VTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISF-ER---GKHLAESLG--VEFFETSAKDN------V 169 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~-~~---~~~~~~~~~--~~~~~~Sa~~~------~ 169 (221)
++++.++..+..|+..+.... ..+.|+++|+||+|+++...... .+ ...+++..+ +.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998888876542 35799999999999976542111 11 122222222 46788999998 8
Q ss_pred CHHHHHHHHHH
Q psy2300 170 NVKGVFERLVD 180 (221)
Q Consensus 170 gi~~l~~~i~~ 180 (221)
|+.+.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999974
No 115
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.9e-27 Score=177.38 Aligned_cols=149 Identities=23% Similarity=0.368 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC-----CeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH-----DKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
+||+++|..++|||||+++|..+.+...+.+|.+.++....+..+ +..+.+.+||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888998877777666653 456899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhC-------------------CCCCcEEEEEeCCCCCCCcccCHH----HHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYS-------------------WDNAQVILVGNKCDMEDERVISFE----RGKHLA 153 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~ 153 (221)
+|+|||++++.+|+++..|+..+.... ..+.|++||+||.|+.+.+.++.+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986531 246899999999999665544443 244567
Q ss_pred HHhCCeEEEEecCCCCC
Q psy2300 154 ESLGVEFFETSAKDNVN 170 (221)
Q Consensus 154 ~~~~~~~~~~Sa~~~~g 170 (221)
...+++.++.+++++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 77889999999887744
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=2.8e-27 Score=174.44 Aligned_cols=157 Identities=26% Similarity=0.432 Sum_probs=125.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|+.|||||||++++..+.+ ....||.+... ..+... ++.+.+||++|+..++..|..++..+|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~-~~~~pT~g~~~--~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEI-SETIPTIGFNI--EEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSE-EEEEEESSEEE--EEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccc-cccCccccccc--ceeeeC--cEEEEEEeccccccccccceeeccccceeE
Confidence 5789999999999999999999998764 33666666444 444443 367999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHh-hCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------hCCeEEEEecCCCCCH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILVGNKCDMEDERVISFERGKHLAES------LGVEFFETSAKDNVNV 171 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi 171 (221)
||+|.++.+.+.+....+..+.. ....+.|++|++||+|+++. .+.++....... ..+.++.|||.+|+|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 99999999988888886666543 23458999999999998664 344555444322 2356899999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 172 KGVFERLVDII 182 (221)
Q Consensus 172 ~~l~~~i~~~~ 182 (221)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999865
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.6e-27 Score=174.69 Aligned_cols=153 Identities=18% Similarity=0.338 Sum_probs=119.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.++|+++|++|+|||||+++++.+.+.. +.++.+.++. .+.. ..+.+.+||+||++.+...+..++..+|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888754 5666665543 3333 347899999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCeEEEEecCCCCCHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLA-----ESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 174 (221)
+|+++++++.....++..+.... ..+.|+++++||+|+.+. ...++..... ...+++++++||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 99999998888877666654332 347999999999999653 2333322221 123457999999999999999
Q ss_pred HHHHHH
Q psy2300 175 FERLVD 180 (221)
Q Consensus 175 ~~~i~~ 180 (221)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=2.2e-27 Score=172.56 Aligned_cols=152 Identities=22% Similarity=0.398 Sum_probs=117.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
+|+++|++|||||||+++|.+..+.. ..++.+.++. .+... ..+.+.+||++|++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988753 4566664443 33332 45789999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH------HHhCCeEEEEecCCCCCHHHHH
Q psy2300 103 VTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLA------ESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
++++.++.....|+..+.... ..+.|+++|+||+|+... ...++..... ...++++++|||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999998988888777764432 258999999999998543 2223332221 1123578999999999999999
Q ss_pred HHHHH
Q psy2300 176 ERLVD 180 (221)
Q Consensus 176 ~~i~~ 180 (221)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=4.6e-27 Score=175.75 Aligned_cols=156 Identities=21% Similarity=0.339 Sum_probs=123.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|++|||||||++++.+..+. .+.++.+... ..+..+ .+.+.+||+||++.+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999988763 4556655433 334343 367899999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------hCCeEE
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAES----------------LGVEFF 161 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~ 161 (221)
+|+|+++..++.....|+..+.... ..+.|+++++||+|+.. .+..++.+.++.. ....++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999998988877777765432 35799999999999854 3455566555532 124689
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q psy2300 162 ETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 162 ~~Sa~~~~gi~~l~~~i~~~ 181 (221)
+|||++|+|++++|+||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999875
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1.4e-27 Score=173.37 Aligned_cols=151 Identities=25% Similarity=0.386 Sum_probs=113.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
||+++|++++|||||++++..+.+. .+.++.+.+.. .+.. ..+.+.+||+||++.+..++..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999887764 34555554433 3322 44789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHHHHH
Q psy2300 103 VTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
++++.++.....++..+ ......+.|+++|+||+|+.+.. ...+...... ..+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99988887766655443 32323479999999999996542 2222221111 1224699999999999999999
Q ss_pred HHHH
Q psy2300 177 RLVD 180 (221)
Q Consensus 177 ~i~~ 180 (221)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 121
>KOG0073|consensus
Probab=99.95 E-value=1.5e-26 Score=160.90 Aligned_cols=165 Identities=23% Similarity=0.349 Sum_probs=132.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..+..++|+++|..|+||||++++|.+.. .....|+.+ +..+++.. +.+++.+||.+|+...++.|..|+..+|+
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 34568999999999999999999999887 345666666 55555544 45889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHH-HhhCCCCCcEEEEEeCCCCCCCcc---cC-HHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMEDERV---IS-FERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~---~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
+|+|+|.+|+..+++....+..+ ......+.|++|++||.|++.+-. +. .-....+++..+++++-||+.+|+++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 99999999999998888755554 333346899999999999974311 11 11234455667889999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy2300 172 KGVFERLVDIICDKM 186 (221)
Q Consensus 172 ~~l~~~i~~~~~~~~ 186 (221)
.+-++|++..+.++.
T Consensus 167 ~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988753
No 122
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=3.2e-26 Score=168.70 Aligned_cols=143 Identities=38% Similarity=0.666 Sum_probs=128.1
Q ss_pred CCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC
Q psy2300 44 DSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS 123 (221)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~ 123 (221)
+.|...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667888999999988888888889999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 124 WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 124 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
..+.|++||+||+|+.+.+.++.++...++..+++.++++||++|.|++++|++|++.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 567899999999999776677888888888888889999999999999999999998876544
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=4.5e-27 Score=170.63 Aligned_cols=151 Identities=20% Similarity=0.359 Sum_probs=119.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
||+++|.+|||||||++++++..+ ....++.+.+... +.. ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999873 4455666654433 333 24789999999999998899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHHHHH
Q psy2300 103 VTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+++++++.....|+..+.... ..+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877765532 3589999999999986543 2333333322 2345899999999999999999
Q ss_pred HHHH
Q psy2300 177 RLVD 180 (221)
Q Consensus 177 ~i~~ 180 (221)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=8.8e-27 Score=170.60 Aligned_cols=152 Identities=26% Similarity=0.418 Sum_probs=116.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF------TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
+|+|+|++|+|||||+++|.+... ...+.++.+.... .+..+ ...+.+||+||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 2233444444443 33333 4789999999999999889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------hCCeEEEEecCCC
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAES-------LGVEFFETSAKDN 168 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 168 (221)
+++|+|+++++++.....|+..+.... ..+.|+++++||+|+.+. ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888777765432 357999999999998654 333444444332 2358999999999
Q ss_pred CCHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVD 180 (221)
Q Consensus 169 ~gi~~l~~~i~~ 180 (221)
+|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=180.55 Aligned_cols=144 Identities=23% Similarity=0.413 Sum_probs=124.3
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCC-------------eEEEEEEEeCCCcc
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-------------KRVKLQIWDTAGQE 81 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~ 81 (221)
..+....+||+|+|..|||||||+++|.++.+...+.+|.+.++....+.+++ ..+.+.|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 56667889999999999999999999999998888889999888777666542 46889999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCC------------CCCcEEEEEeCCCCCCCc---c---
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW------------DNAQVILVGNKCDMEDER---V--- 143 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~Dl~~~~---~--- 143 (221)
.|..++..++++++++|+|||++++.+++++..|+..+..... .+.|++||+||+|+...+ .
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999976531 258999999999996542 2
Q ss_pred cCHHHHHHHHHHhCC
Q psy2300 144 ISFERGKHLAESLGV 158 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~ 158 (221)
+..++++.+++.+++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 357889999998873
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.9e-26 Score=171.54 Aligned_cols=156 Identities=18% Similarity=0.259 Sum_probs=120.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|.+|||||||++++.+..+. .+.++.+.+.. .+.. .++.+.+||+||+..+...+..++..+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999988753 34455544332 3333 3478999999999988889999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------hCCeEEEEec
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAES------------LGVEFFETSA 165 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 165 (221)
+|+|++++.++.....++..+... ...+.|+++|+||+|++.. ++.++....... ....+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999998888777766432 2357899999999998643 444554433311 1235899999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy2300 166 KDNVNVKGVFERLVDI 181 (221)
Q Consensus 166 ~~~~gi~~l~~~i~~~ 181 (221)
++|.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.3e-25 Score=166.32 Aligned_cols=154 Identities=22% Similarity=0.328 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------ceeeeeEEEEEEe-----CCeEEEEEEEeCCCccccc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS-------FTSAFVS------TVGIDFKVKTVFR-----HDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~~~ 84 (221)
+|+++|++++|||||+++|++.. +...+.+ +.+.+........ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1112222 2234444333322 5567889999999999998
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC---eEE
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV---EFF 161 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 161 (221)
..+..++..+|++|+|+|++++.++.....|..... .+.|+++|+||+|+.+.. .......+.+..++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 888889999999999999998766666655544332 378999999999986432 12223445555555 489
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q psy2300 162 ETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 162 ~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998754
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.1e-25 Score=162.83 Aligned_cols=151 Identities=22% Similarity=0.444 Sum_probs=119.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDV 103 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~ 103 (221)
|+++|++|||||||++++.+..+...+.++.+..... +... .+.+.+||+||++.+..++..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999999888887877755543 3333 37899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 104 TNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLA-----ESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 104 ~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++..++.....|+..+... ...+.|+++|+||+|+.+.... .+..... ....++++++|+++|.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9998888877766665432 2347899999999998654322 2221111 112357899999999999999999
Q ss_pred HHH
Q psy2300 178 LVD 180 (221)
Q Consensus 178 i~~ 180 (221)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 129
>KOG0070|consensus
Probab=99.94 E-value=6.4e-26 Score=161.68 Aligned_cols=160 Identities=19% Similarity=0.353 Sum_probs=131.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
....+|+++|..+|||||++++|..+.+... .||.|.......+ .++++++||.+|++.++.+|..|+...+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4579999999999999999999998886444 7888865555555 3688999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----hCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAES-----LGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 172 (221)
||+|.+|++.+..++..+..+.... ..+.|+++++||.|++++- +..++...... ....+..|+|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 9999999999999988766665544 4789999999999997653 33333333322 23568899999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2300 173 GVFERLVDIICDK 185 (221)
Q Consensus 173 ~l~~~i~~~~~~~ 185 (221)
+.++|+.+.+..+
T Consensus 168 egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 168 EGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887653
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3e-25 Score=162.62 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc---------cchhhccC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT---------ITTAYYRG 93 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~ 93 (221)
+|+++|.+|+|||||+++|++..+.....+ +.+............+.+.+|||||...... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYP--FTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCC--CcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999999876432222 2222222222233457899999999742110 00111123
Q ss_pred CcEEEEEEECCChhh--HHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 94 AMGFILMYDVTNEES--FTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
+|++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.+...+. +...+....+.+++++||++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence 689999999998754 355556777775543 479999999999996544332 244455555678999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 172 KGVFERLVDII 182 (221)
Q Consensus 172 ~~l~~~i~~~~ 182 (221)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 131
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=2.8e-25 Score=178.16 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=118.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc-------ccccchhhccC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER-------YRTITTAYYRG 93 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 93 (221)
...|+|||.||||||||+++|++........+.++.......+.+. ....+.+||+||.-. ....+..+++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 3569999999999999999999876322222222222223333332 234689999999532 11222335667
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSW--DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
++++++|+|+++.++++.+..|...+..+.. .+.|+++|+||+|+.+......+....+....+.+++++||++++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988889999999999877642 47899999999999765444333444455556688999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2300 172 KGVFERLVDIICDK 185 (221)
Q Consensus 172 ~~l~~~i~~~~~~~ 185 (221)
++++++|.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=5.3e-25 Score=161.54 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc----cccccchhh---ccCCc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE----RYRTITTAY---YRGAM 95 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~---~~~~d 95 (221)
.|+++|.+|||||||+++|.+........+..+.......+..++ ...+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999997653211111111111222222222 2479999999963 222233333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCeEEEEecCCCCCH
Q psy2300 96 GFILMYDVTNE-ESFTSIQDWITQIKTYSW--DNAQVILVGNKCDMEDERVISFERGKHLAES-LGVEFFETSAKDNVNV 171 (221)
Q Consensus 96 ~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 171 (221)
++++|+|++++ .++..+..|+..+..... .+.|+++|+||+|+...... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789998889888866532 37899999999999665443 2334444444 3678999999999999
Q ss_pred HHHHHHHHHH
Q psy2300 172 KGVFERLVDI 181 (221)
Q Consensus 172 ~~l~~~i~~~ 181 (221)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=1.8e-24 Score=159.21 Aligned_cols=155 Identities=20% Similarity=0.287 Sum_probs=115.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|++|||||||++++.+..+. .+.++.+.+.. .+..+ +..+.+||++|+..+...+..++..+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 34799999999999999999999987653 34555554433 33333 367899999999888888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-----CeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAESLG-----VEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~ 172 (221)
+|+|+++..++.....++..+... ...+.|+++++||+|+.+... .++......... .+++++||++|+|++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 999999988888877766655332 234799999999999855322 222222111111 247899999999999
Q ss_pred HHHHHHHH
Q psy2300 173 GVFERLVD 180 (221)
Q Consensus 173 ~l~~~i~~ 180 (221)
++|+||.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999875
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=7.9e-25 Score=165.47 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=113.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc---------ccccch
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER---------YRTITT 88 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~ 88 (221)
.++.++|+|+|++|||||||++++++..+.....+..+.+.....+..++. ..+.+|||||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 356789999999999999999999998643332222333333333433332 3789999999632 11111
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN 168 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (221)
..+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+..... ......+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence 235689999999999998888887777777766554578999999999996543221 334445568999999999
Q ss_pred CCHHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVDI 181 (221)
Q Consensus 169 ~gi~~l~~~i~~~ 181 (221)
.|+++++++|.+.
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998765
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=3.3e-24 Score=154.69 Aligned_cols=158 Identities=26% Similarity=0.412 Sum_probs=125.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|.+|+|||||++++....++..+.++.+.++....+..++..+.+.+||+||+..+..++..++..++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987777777777777776676766668899999999998888888888999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 101 YDVTNE-ESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 101 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||++|.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998876 6666555 56666665553488999999999996543 22233333333345689999999999999999986
Q ss_pred H
Q psy2300 179 V 179 (221)
Q Consensus 179 ~ 179 (221)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.7e-24 Score=157.82 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS---FTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
.|+++|.+|+|||||+++|++.. +..+..+..+.+.....+.... ...+.+|||||++.+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999999642 3222233333333333343332 4579999999998887666677889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---hCCeEEEEecCCCCCH
Q psy2300 100 MYDVTN---EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV--ISFERGKHLAES---LGVEFFETSAKDNVNV 171 (221)
Q Consensus 100 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi 171 (221)
|+|+++ +++.+.+ ..+... ...|+++++||+|+.+... ...++....... .+.+++++||++|.|+
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999987 3333322 222222 1349999999999965421 112333344443 3578999999999999
Q ss_pred HHHHHHHHH
Q psy2300 172 KGVFERLVD 180 (221)
Q Consensus 172 ~~l~~~i~~ 180 (221)
+++++++.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998754
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.7e-24 Score=154.38 Aligned_cols=134 Identities=22% Similarity=0.326 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc-----cccccchhhccCCcEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE-----RYRTITTAYYRGAMGF 97 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~v 97 (221)
||+++|++|+|||||+++|.+..+ .+.++.+.++ .-.+|||||.. .+..+.. .++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY------------NDGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE------------cCeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999998764 2333332221 11689999972 2333333 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~ 176 (221)
++|+|++++.++... .|...+ ..|+++|+||+|+.+. ....++..++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~~-~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCCh-hHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 999999999887552 343321 3499999999999653 3345666777777776 799999999999999999
Q ss_pred HHH
Q psy2300 177 RLV 179 (221)
Q Consensus 177 ~i~ 179 (221)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.1e-23 Score=154.29 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH-DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
.|+|+|.+|+|||||+++|....+.....+..+.+.....+..+ .....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887655433333333333333332 13568999999999988888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCH-HHHHHHHH------HhCCeEEEEecCCCCCHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISF-ERGKHLAE------SLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 174 (221)
|+++....... ..+..+.. .+.|+++|+||+|+........ +....+.. ....+++++|+++|.|+.++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99874322221 12222333 3789999999999864321111 11111111 11357999999999999999
Q ss_pred HHHHHHHHH
Q psy2300 175 FERLVDIIC 183 (221)
Q Consensus 175 ~~~i~~~~~ 183 (221)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987643
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=4.3e-24 Score=160.17 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------ccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD--DSFTSAF------------VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT 87 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (221)
-+|+++|.+++|||||+++|+. +.+.... ..+.+.+.......+....+.+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 4443322 2334555555555555566889999999999998889
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------hCCe
Q psy2300 88 TAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV-ISFERGKHLAES-------LGVE 159 (221)
Q Consensus 88 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~~ 159 (221)
..+++.+|++++|+|+++.. +.....++..+.. .+.|+++++||+|+.+... ...++...+... .+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333344444433 3789999999999964322 112334444322 2578
Q ss_pred EEEEecCCCCCHHHH------HHHHHHHHHHh
Q psy2300 160 FFETSAKDNVNVKGV------FERLVDIICDK 185 (221)
Q Consensus 160 ~~~~Sa~~~~gi~~l------~~~i~~~~~~~ 185 (221)
++++||++|.|+.++ +++|++.+..+
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 999999999888544 44555555443
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=3.3e-23 Score=148.15 Aligned_cols=153 Identities=50% Similarity=0.828 Sum_probs=120.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC
Q psy2300 26 IIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVT 104 (221)
Q Consensus 26 vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~ 104 (221)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999886 44444555 6666777766667789999999998888777788899999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhhCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 105 NEESFTSIQDWI-TQIKTYSWDNAQVILVGNKCDMEDERVISFER-GKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 105 ~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
++.++..+..|. ..+......+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988888772 22333345689999999999996654433222 3344455567999999999999999999875
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=5.6e-24 Score=160.42 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=104.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC-----------cccccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG-----------QERYRTIT 87 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~ 87 (221)
...++|+++|.+|+|||||+++|.+..+.....+ ++++........ .+.+||||| .+.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4568999999999999999999998876544334 445554444332 589999999 34555555
Q ss_pred hhhcc----CCcEEEEEEECCChhhHH----------HHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q psy2300 88 TAYYR----GAMGFILMYDVTNEESFT----------SIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLA 153 (221)
Q Consensus 88 ~~~~~----~~d~vi~v~d~~~~~s~~----------~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 153 (221)
..++. .++++++|+|.++...+. ....+...+.. .+.|+++|+||+|+.+.. .+...++.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHHHH
Confidence 44543 467888999876532110 00111222222 379999999999996543 23344555
Q ss_pred HHhCC---------eEEEEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 154 ESLGV---------EFFETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 154 ~~~~~---------~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
...++ +++++||++| |+++++++|.+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 55554 4899999999 9999999998876543
No 142
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=6.4e-23 Score=156.59 Aligned_cols=166 Identities=35% Similarity=0.594 Sum_probs=135.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+++|+.|||||||+++|..+.+...+.++.+..+...........+.+.+|||+|++.++.++..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 39999999999999999999999999888888887777766666655578899999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHh---CCeEEEEe
Q psy2300 101 YDVTN-EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESL---GVEFFETS 164 (221)
Q Consensus 101 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 164 (221)
+|..+ ..+++....|...+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99998 5566666679999888765579999999999997653 22222222222222 23489999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHhh
Q psy2300 165 AK--DNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 165 a~--~~~gi~~l~~~i~~~~~~~~ 186 (221)
++ ++.++.++|..+...+.+..
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhh
Confidence 99 99999999999999887554
No 143
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=2.3e-23 Score=168.40 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=111.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc---------cccccchh
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE---------RYRTITTA 89 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~ 89 (221)
+..++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+++ +..+.+|||+|.. .+...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 3558999999999999999999999875333333333334444555533 2478999999962 222222 2
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2300 90 YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNV 169 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (221)
.+..+|++++|+|++++.++.++..|...+......+.|+++|+||+|+..... .... .....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCC
Confidence 478899999999999998888877777766665445789999999999954322 1111 1122468999999999
Q ss_pred CHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDI 181 (221)
Q Consensus 170 gi~~l~~~i~~~ 181 (221)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 144
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1e-24 Score=155.57 Aligned_cols=148 Identities=20% Similarity=0.257 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc------cccchhhc--cC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY------RTITTAYY--RG 93 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~ 93 (221)
|+|+++|.||+|||||+|+|++.... ....+|+|.......+...+..+.++|+||--.. ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~--v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK--VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE--EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce--ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 68999999999999999999999843 3444455554444333222367999999993222 22233343 68
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
.|++++|+|+++.+.- ..+..++.+. +.|+++++||+|......+.. +...+.+..+++++++||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999875422 2233444443 899999999999855444332 35666777899999999999999999
Q ss_pred HHHHH
Q psy2300 174 VFERL 178 (221)
Q Consensus 174 l~~~i 178 (221)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=2.8e-23 Score=150.47 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=109.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc------cchhhcc--CCcEE
Q psy2300 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT------ITTAYYR--GAMGF 97 (221)
Q Consensus 26 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~v 97 (221)
|+|.+|+|||||++++++..+.....+..+.+.....+..++ ..+.+|||||...+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865444445444445555555554 5789999999876553 2455554 89999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++|+|+.++.... .+...+... +.|+++++||+|+.+...+.. ....+....+.+++++|+.+|.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL---GLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc---CCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998765432 344444433 799999999999976544433 345666677889999999999999999999
Q ss_pred HHHH
Q psy2300 178 LVDI 181 (221)
Q Consensus 178 i~~~ 181 (221)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8875
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=3.2e-23 Score=166.20 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=113.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc----cccch---hhccC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY----RTITT---AYYRG 93 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~---~~~~~ 93 (221)
...|+|+|.||||||||+++|+.........+.++.......+.+++ ...+.+||+||.... ..+.. .++..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 45699999999999999999998763222222222222233333332 367899999996421 12222 33557
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC
Q psy2300 94 AMGFILMYDVTNE---ESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN 168 (221)
Q Consensus 94 ~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (221)
++++++|+|+++. ++++.+..|...+..+. ..+.|++||+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 67888888888876653 24789999999999966533 223344555566788999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVDII 182 (221)
Q Consensus 169 ~gi~~l~~~i~~~~ 182 (221)
+|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 147
>KOG0071|consensus
Probab=99.91 E-value=2.5e-23 Score=141.22 Aligned_cols=156 Identities=22% Similarity=0.382 Sum_probs=126.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+.+|..++||||++.+|+.+.. ....||.|... .++++ +++.+.+||.+|++..+.+|++|+.+..++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv--etVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV--ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeE--EEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 478999999999999999999998873 45566666444 44433 56889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHh-hCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----hCCeEEEEecCCCCCHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKT-YSWDNAQVILVGNKCDMEDERVISFERGKHLAES-----LGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 173 (221)
|+|..+.+.++++++.+..+-. ......|++|.+||.|++.+. ++.++..+... ..+.+.++++.+|.|+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999999888888886655533 335689999999999997763 45555555432 235788999999999999
Q ss_pred HHHHHHHHH
Q psy2300 174 VFERLVDII 182 (221)
Q Consensus 174 l~~~i~~~~ 182 (221)
-|.||++.+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999998765
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=3.3e-23 Score=162.84 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEE-EEEeCCeEEEEEEEeCCCccccc-c-------cchhhccC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK-TVFRHDKRVKLQIWDTAGQERYR-T-------ITTAYYRG 93 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~-~-------~~~~~~~~ 93 (221)
+|+|+|.+|+|||||+|+|++..+.. ..+..+++.... .+... ...++.||||||..... . ....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987532 122222333222 22222 23578999999964321 1 12345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVK 172 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 172 (221)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+.... .+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876553 334444444 37899999999999643221 2233344444444 79999999999999
Q ss_pred HHHHHHHHHH
Q psy2300 173 GVFERLVDII 182 (221)
Q Consensus 173 ~l~~~i~~~~ 182 (221)
+++++|.+.+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9999987765
No 149
>KOG0075|consensus
Probab=99.90 E-value=1.2e-23 Score=143.83 Aligned_cols=154 Identities=23% Similarity=0.446 Sum_probs=124.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+.+.++|..++|||||++.+..+.+.....|+.|... .+++ .+.+.+.+||.||+..++.+|+.|.+++++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~t--kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEec--cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 46789999999999999999999988888888888444 3332 2557899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHH-HHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--------CeEEEEecCCCCCH
Q psy2300 101 YDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG--------VEFFETSAKDNVNV 171 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~-l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi 171 (221)
+|+.|++.++-.+..+.. +.+....+.|++|++||.|++++ ++.... ..+.| +..|.+|+++..||
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~l---i~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIAL---IERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHH---HHHhCccccccceEEEEEEEEcCCccH
Confidence 999999888777764444 45555679999999999999775 232222 22333 45889999999999
Q ss_pred HHHHHHHHHHHH
Q psy2300 172 KGVFERLVDIIC 183 (221)
Q Consensus 172 ~~l~~~i~~~~~ 183 (221)
+.+.+||++...
T Consensus 171 d~~~~Wli~hsk 182 (186)
T KOG0075|consen 171 DITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 150
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=6.3e-23 Score=165.60 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=106.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEE--EEEEeCCeEEEEEEEeCCCcc-cccccc-------h
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV--KTVFRHDKRVKLQIWDTAGQE-RYRTIT-------T 88 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~-~~~~~~-------~ 88 (221)
...++|+++|.+|+|||||+++|++..+.. +.+..+++... ..+..+ +.++.||||||.. .+..+. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 356799999999999999999999887632 22333333322 223333 3578999999974 222222 1
Q ss_pred hhccCCcEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CeEEEEec
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG--VEFFETSA 165 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 165 (221)
..+..+|++++|+|..+ ++.... .|+..+... +.|.++|+||+|+.+. ...+...++...+ ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 24679999999999765 333343 355555443 5677889999999643 2344555555443 57999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy2300 166 KDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 166 ~~~~gi~~l~~~i~~~~~ 183 (221)
++|.|+++++++|.+.+.
T Consensus 199 ktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAK 216 (339)
T ss_pred cCccCHHHHHHHHHHhCC
Confidence 999999999999887654
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=3.2e-23 Score=152.77 Aligned_cols=155 Identities=21% Similarity=0.259 Sum_probs=106.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccc---hhhccCCcEEE
Q psy2300 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER----YRTIT---TAYYRGAMGFI 98 (221)
Q Consensus 26 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~d~vi 98 (221)
++|++|+|||||+++|.+..+.....+..+.+.....+..+ ....+.+|||||... ...++ ...+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999986422212222222222223333 146789999999632 22222 23467899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhhCC-------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEec
Q psy2300 99 LMYDVTNE------ESFTSIQDWITQIKTYSW-------DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSA 165 (221)
Q Consensus 99 ~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (221)
+|+|+.+. .++.....|...+..... .+.|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 577777777777754431 37999999999999655443322222333344568999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy2300 166 KDNVNVKGVFERLVDI 181 (221)
Q Consensus 166 ~~~~gi~~l~~~i~~~ 181 (221)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 152
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3.1e-22 Score=164.51 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe-EEEEEEEeCCCccc----ccccchh---hccC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK-RVKLQIWDTAGQER----YRTITTA---YYRG 93 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~~---~~~~ 93 (221)
..|+|+|.||||||||+++|++.... ....+++|..+....+... ...+.+||+||... ...+... ++..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 37999999999999999999987632 2222233333332222212 35799999999532 2223333 3556
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC
Q psy2300 94 AMGFILMYDVTNE---ESFTSIQDWITQIKTYSW--DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN 168 (221)
Q Consensus 94 ~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (221)
++++++|+|+++. +.+++...|...+..+.. .+.|++||+||+|+... .+....+.+..+.+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence 9999999999864 677777778888876542 47899999999998432 23445555556678999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy2300 169 VNVKGVFERLVDIICDKM 186 (221)
Q Consensus 169 ~gi~~l~~~i~~~~~~~~ 186 (221)
+|+++++++|.+.+.+..
T Consensus 313 eGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 313 QGLDELLYAVAELLEETP 330 (424)
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999998876543
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=2.1e-22 Score=145.47 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chhhccC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI--------TTAYYRG 93 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 93 (221)
++|+++|++|+|||||++++++..... ..+..+++..............+.+|||||...+... ...++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 589999999999999999999876321 1122222222222222223457899999996544321 2245678
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|+++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHH
Confidence 999999999998777766554332 248999999999998654432 2334457899999999999999
Q ss_pred HHHHHHHHH
Q psy2300 174 VFERLVDII 182 (221)
Q Consensus 174 l~~~i~~~~ 182 (221)
++++|.+.+
T Consensus 148 l~~~l~~~~ 156 (157)
T cd04164 148 LKEALLELA 156 (157)
T ss_pred HHHHHHHhh
Confidence 999987754
No 154
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.6e-22 Score=168.27 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=112.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc----cccc---chhhcc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER----YRTI---TTAYYR 92 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~ 92 (221)
....|+|||.||||||||+++|++.... ....+++|..+....+......+.+||+||... ...+ ...++.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 3467999999999999999999987632 222233333333333333346799999999421 1111 223467
Q ss_pred CCcEEEEEEECCC----hhhHHHHHHHHHHHHhhC-----------CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC
Q psy2300 93 GAMGFILMYDVTN----EESFTSIQDWITQIKTYS-----------WDNAQVILVGNKCDMEDERVISFERGKHLAESLG 157 (221)
Q Consensus 93 ~~d~vi~v~d~~~----~~s~~~~~~~~~~l~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 157 (221)
.+|++|+|+|+++ ++.+.++..+...+..+. ..+.|++||+||+|+++..... +.........+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcC
Confidence 8999999999975 335555555555554432 2478999999999997544322 22333344557
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 158 VEFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 158 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
++++++||++++|+++++.+|.+.+.....
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 899999999999999999999998876543
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.1e-22 Score=146.99 Aligned_cols=146 Identities=19% Similarity=0.156 Sum_probs=99.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------cchhhccCCc
Q psy2300 25 LIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT--------ITTAYYRGAM 95 (221)
Q Consensus 25 ~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 95 (221)
+++|.+|+|||||+++|++.... ....+..+.+........ .+..+.+|||||...+.. .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999987521 111222222223333333 336799999999876543 2345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKGV 174 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 174 (221)
++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+.+.... .......+. +++++|+++|.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876544332 22333333 26999999999999664322 222334555 7899999999999999
Q ss_pred HHHHHHH
Q psy2300 175 FERLVDI 181 (221)
Q Consensus 175 ~~~i~~~ 181 (221)
+++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 156
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=4.5e-22 Score=149.35 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=112.4
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc----------c
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ----------E 81 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~ 81 (221)
.+.+.+.+..++|+++|.+|+|||||+++|++..+...+.++.+.+........ ...+.+|||||. +
T Consensus 15 ~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 15 KLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHH
Confidence 355666678899999999999999999999997755566666665555443332 257999999994 2
Q ss_pred cccccchhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHh
Q psy2300 82 RYRTITTAYYRG---AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS--FERGKHLAESL 156 (221)
Q Consensus 82 ~~~~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~ 156 (221)
.+..+...++.. .+++++|+|.+++...... .+...+.. .+.|+++++||+|+.+..... .++........
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~ 167 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG 167 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc
Confidence 333334444444 4678889998775443321 12222322 378999999999986533221 12233333333
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 157 GVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
...++++|+++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 168 DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999887654
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=3.4e-22 Score=165.95 Aligned_cols=154 Identities=22% Similarity=0.218 Sum_probs=112.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chh
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI--------TTA 89 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 89 (221)
...++|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999987531 22233333344444455543 56789999997544322 234
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2300 90 YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNV 169 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (221)
++..+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... . ...+....+.+++++|+++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~---~---~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN---S---LEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc---c---hhhhhhhcCCceEEEEEec-C
Confidence 67899999999999998877665 5555543 37899999999999543 1 2234555677899999998 6
Q ss_pred CHHHHHHHHHHHHHHhh
Q psy2300 170 NVKGVFERLVDIICDKM 186 (221)
Q Consensus 170 gi~~l~~~i~~~~~~~~ 186 (221)
|++++|+.+.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 347 KIKALVDLLTQKINAFY 363 (442)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887765
No 158
>KOG3883|consensus
Probab=99.89 E-value=1.2e-21 Score=135.05 Aligned_cols=165 Identities=22% Similarity=0.329 Sum_probs=134.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeeEEEEEE-eCCeEEEEEEEeCCCcccc-cccchhhccCCc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVF-RHDKRVKLQIWDTAGQERY-RTITTAYYRGAM 95 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d 95 (221)
..-||+|+|..++|||+++.+++.+... .+..+|+.-. +...+. -++..-.+.++||.|-... ..+-..++.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi-Y~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI-YVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh-eeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 3579999999999999999998766532 2455665533 333333 3444568999999996555 677888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
++++|||..|++||..+.-+-..|.++. ...+|++|++||.|+.+.+.+..+.+..|++...+..+++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999998877666676555 468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2300 175 FERLVDIICDK 185 (221)
Q Consensus 175 ~~~i~~~~~~~ 185 (221)
|.++...+.+.
T Consensus 167 f~~l~~rl~~p 177 (198)
T KOG3883|consen 167 FTYLASRLHQP 177 (198)
T ss_pred HHHHHHhccCC
Confidence 99888776543
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.2e-22 Score=150.63 Aligned_cols=158 Identities=17% Similarity=0.126 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCCc---cc--cceeeeeEEEEEE----------eCCeEEEEEEEeCCCccc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD----SFTSA---FV--STVGIDFKVKTVF----------RHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~----~~~~~---~~--~~~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~ 82 (221)
++|+++|++++|||||+++|+.. .+... .. .|.........+. .....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 11111 11 2222222222222 112357899999999865
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH------
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--SFERGKHLAE------ 154 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~------ 154 (221)
+..........+|++++|+|+.+.........+. .. .. .+.|+++++||+|+...... ..++......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5433334456789999999998754333332222 11 22 26799999999998643221 1222222111
Q ss_pred -HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 155 -SLGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 155 -~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
..+++++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999999988765
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=2.8e-22 Score=168.83 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=108.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc--------ccccchhhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER--------YRTITTAYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 91 (221)
...+|+|+|.+|||||||+++|++.... ...++.+++...........+..+.+|||||.+. +...+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987642 2334445544443333322335688999999652 233345578
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVN 170 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 170 (221)
..+|++|+|+|+++..++.. ..+...+.. .+.|+++|+||+|+.... .+....+ ..++ ..+++||++|.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence 89999999999998765543 234444443 379999999999985432 1222222 2333 457999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIICD 184 (221)
Q Consensus 171 i~~l~~~i~~~~~~ 184 (221)
++++|++|.+.+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999988754
No 161
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=2.5e-22 Score=138.90 Aligned_cols=114 Identities=33% Similarity=0.570 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
||+|+|..|+|||||+++|++..+. ....+..+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999875 12334445555555666677777799999999998888888889999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHhhCCCCCcEEEEEeCCC
Q psy2300 101 YDVTNEESFTSIQDW---ITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ivv~nK~D 137 (221)
||++++.+++.+..+ +..+.... .+.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999998665 44444432 5699999999998
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=5.1e-22 Score=170.31 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=116.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------ceeeeeEEEEEEe-----CCeEEEEEEEeCCCccc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS-------FTSAFVS------TVGIDFKVKTVFR-----HDKRVKLQIWDTAGQER 82 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~ 82 (221)
.-+|+++|+.++|||||+++|+... +...+.. ..++++....+.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4579999999999999999998642 1122222 2355555444333 45568999999999999
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC---e
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV---E 159 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 159 (221)
|...+..++..+|++|+|+|+++..+......|...+. .+.|+++|+||+|+.+... .....++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSADP--ERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccCH--HHHHHHHHHHhCCCcce
Confidence 98888899999999999999998776666666655443 3789999999999965321 1223344444554 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q psy2300 160 FFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 160 ~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
++++||++|.|++++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999988765
No 163
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=4.1e-22 Score=148.48 Aligned_cols=156 Identities=21% Similarity=0.174 Sum_probs=109.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccc--------------eeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVST--------------VGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITT 88 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 88 (221)
+|+|+|.+|+|||||+++|++.......... .+.+..............+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999988754432111 11222222222222346799999999988888888
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH-----------
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--SFERGKHLAES----------- 155 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~----------- 155 (221)
.++..+|++++|+|+.++...... .++..+.. .+.|+++++||+|+...... ..+........
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 889999999999999876544332 33344433 48999999999999652221 12223333332
Q ss_pred ---hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 156 ---LGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 156 ---~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
...+++++||++|.|+++++++|.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246899999999999999999988875
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=2.2e-22 Score=145.87 Aligned_cols=142 Identities=20% Similarity=0.239 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccchhhccCCcEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER----YRTITTAYYRGAMGFI 98 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~vi 98 (221)
+|+++|.+|+|||||++++.+... ...++.+..+ ... .+|||||... +.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~v~~-------~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQAVEF-------NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceEEEE-------CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999886541 1112222111 111 2699999632 1111123468999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--eEEEEecCCCCCHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV--EFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~ 176 (221)
+|+|+++..++. ..|+..+. .+.|+++++||+|+.+. ..+....++...++ +++++||++|.|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~~----~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDIG----VSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhcc----CCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999887652 23433331 36799999999999653 34556677777774 899999999999999999
Q ss_pred HHHHHHHHhh
Q psy2300 177 RLVDIICDKM 186 (221)
Q Consensus 177 ~i~~~~~~~~ 186 (221)
++.+.+.+..
T Consensus 141 ~l~~~~~~~~ 150 (158)
T PRK15467 141 YLASLTKQEE 150 (158)
T ss_pred HHHHhchhhh
Confidence 9988775544
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=3.3e-22 Score=168.39 Aligned_cols=160 Identities=20% Similarity=0.154 Sum_probs=109.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc----------cccccc-
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE----------RYRTIT- 87 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~- 87 (221)
..++|+++|.+|+|||||+++|++..+. ....+..+.+.....+..++. .+.+|||+|.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4699999999999999999999988642 222333333333344445543 56799999952 222222
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC--HHHHHH-HHHHhCCeEEEEe
Q psy2300 88 TAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS--FERGKH-LAESLGVEFFETS 164 (221)
Q Consensus 88 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~-~~~~~~~~~~~~S 164 (221)
..+++.+|++++|+|++++.++.+.. ++..+.. .+.|+++|+||+|+.+..... ..+... +......+++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999988877764 4444443 379999999999996432110 111111 1111236899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q psy2300 165 AKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~~ 185 (221)
|++|.|++++|+.+.+.+...
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESW 384 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999998877544
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=9.4e-22 Score=162.49 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc--cccch------hhcc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY--RTITT------AYYR 92 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~ 92 (221)
..+|+++|.+|||||||+|+|++..+.....+..+.+.....+...+. ..+.+|||+|.... ..++. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987754333333333333444444432 25789999997321 12222 2368
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCe-EEEEecCCCCCH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVE-FFETSAKDNVNV 171 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 171 (221)
.+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+...... ... ....+.+ ++++||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCCH
Confidence 8999999999999988888766666555544457999999999998543111 111 1123444 588999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2300 172 KGVFERLVDIICDK 185 (221)
Q Consensus 172 ~~l~~~i~~~~~~~ 185 (221)
++++++|.+.+...
T Consensus 351 deL~e~I~~~l~~~ 364 (426)
T PRK11058 351 PLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999987543
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=3.7e-22 Score=166.57 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=108.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chhh
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI--------TTAY 90 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 90 (221)
..++|+++|.+|+|||||+|+|++.... ....+..+.++....+..+ +..+.+|||+|...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999999999987631 2222322333333444444 357899999997644321 2235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVN 170 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (221)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 788999999999999887776544433 2478999999999996543221 23356899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIICD 184 (221)
Q Consensus 171 i~~l~~~i~~~~~~ 184 (221)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 168
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=6.6e-22 Score=149.24 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeeEEE--EEEeC---------------------------C----
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVK--TVFRH---------------------------D---- 67 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~--~~~~~---------------------------~---- 67 (221)
++|+++|+.|+|||||+..+.+..... ......+.+.... .+... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997652111 0111111111111 10000 0
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--C
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--S 145 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 145 (221)
...++.||||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1167899999999988777777788899999999998742111111222222222 23579999999999653221 1
Q ss_pred HHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 146 FERGKHLAESL---GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 146 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.++...+.... +.+++++||++|+|+++++++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 12333333332 56899999999999999999987643
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.3e-21 Score=165.54 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=110.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
.+..+|+++|++++|||||+++|....+.....+.++.+.....+..++. ..+.||||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 35689999999999999999999988765554444444444444444332 27899999999999998888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC---------CeEEEEecCCCC
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG---------VEFFETSAKDNV 169 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 169 (221)
+|+|+++....+.... +..... .+.|+++++||+|+.+. ..++....+...+ .+++++||++|+
T Consensus 164 LVVda~dgv~~qT~e~-i~~~~~---~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIEA-ISHAKA---ANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHHH-HHHHHH---cCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999987432222221 222222 37999999999999653 2233333333222 479999999999
Q ss_pred CHHHHHHHHHH
Q psy2300 170 NVKGVFERLVD 180 (221)
Q Consensus 170 gi~~l~~~i~~ 180 (221)
|+++++++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999864
No 170
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=9.8e-22 Score=145.58 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=103.5
Q ss_pred hhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc----------cc
Q psy2300 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE----------RY 83 (221)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~ 83 (221)
.+.+.+..++|+++|.+|+|||||++++++..+...+.++.+.+........++ .+.+|||||.. .+
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHH
Confidence 455667889999999999999999999998865455556666555544443332 58899999942 23
Q ss_pred cccchhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHhC-
Q psy2300 84 RTITTAYYR---GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV--ISFERGKHLAESLG- 157 (221)
Q Consensus 84 ~~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~- 157 (221)
..+...+++ .++++++|+|++++.+..+. .++..+.. .+.|+++++||+|+..... ...++.+..+...+
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence 333334444 35799999999876544443 23333333 3799999999999864321 12334444454443
Q ss_pred -CeEEEEecCCCCCHH
Q psy2300 158 -VEFFETSAKDNVNVK 172 (221)
Q Consensus 158 -~~~~~~Sa~~~~gi~ 172 (221)
..++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 479999999999974
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=2.9e-21 Score=161.47 Aligned_cols=161 Identities=19% Similarity=0.150 Sum_probs=108.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc-----------
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT----------- 87 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 87 (221)
...++|+++|.+|+|||||+++|++..... ..+..+++.......+...+..+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeee-cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 356899999999999999999999875321 12223333333322222223478999999965443221
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-H----hCCeEEE
Q psy2300 88 TAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAE-S----LGVEFFE 162 (221)
Q Consensus 88 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~~ 162 (221)
..+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+... ....++...... . ..+++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence 23578999999999999887766553 3333333 37999999999999621 111222222221 1 1368999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHh
Q psy2300 163 TSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
+||++|.|++++|+++.+.+...
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999876544
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=6e-21 Score=140.02 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=101.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc-----------cch
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT-----------ITT 88 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 88 (221)
.++|+++|.+|+|||||+++|++..... ...+..........+..++ ..+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999876321 2222222222222333333 4578999999643311 012
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-HHh----CCeEEEE
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLA-ESL----GVEFFET 163 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~ 163 (221)
..+..+|++++|+|+.++.+..... +...+.. .+.|+++++||+|+.+......+...... ... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 2467899999999999887655432 3333332 37899999999999655322222222222 222 3589999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q psy2300 164 SAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~ 181 (221)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=4e-21 Score=164.67 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC---CCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD---SFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
+.|+++|++++|||||+++|++. .++.+....++.+.....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999963 33334444444444444444443 78999999999999888888899999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHh----CCeEEEEecCCC
Q psy2300 99 LMYDVTN---EESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVI--SFERGKHLAESL----GVEFFETSAKDN 168 (221)
Q Consensus 99 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 168 (221)
+|+|+++ +++++++. .+... +.| ++|++||+|+.+.... ..++...+.... +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 44444432 23222 677 9999999999654322 123444555444 468999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVDIICD 184 (221)
Q Consensus 169 ~gi~~l~~~i~~~~~~ 184 (221)
.|+++++++|.+.+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999988776544
No 174
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=3.2e-21 Score=157.70 Aligned_cols=161 Identities=18% Similarity=0.169 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe-EEEEEEEeCCCcccc-------cccchhhccC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK-RVKLQIWDTAGQERY-------RTITTAYYRG 93 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~-------~~~~~~~~~~ 93 (221)
..|+|||.||||||||+|+|++... ...+.+.+|.......+... ...+.|+||||.-.- ......++..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 3799999999999999999998763 33333333333333322212 245899999995321 1112235788
Q ss_pred CcEEEEEEECC---ChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CeEEEEecC
Q psy2300 94 AMGFILMYDVT---NEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLG--VEFFETSAK 166 (221)
Q Consensus 94 ~d~vi~v~d~~---~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 166 (221)
+|++++|+|++ +.+.++....|+..+..+. ..+.|++||+||+|+.....+ .+....+....+ .+++++||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999988 4566777777888776653 236899999999999654332 233344444434 378999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy2300 167 DNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~~~~~ 185 (221)
++.|+++++++|.+.+.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999999887653
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=6.2e-21 Score=138.88 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------cchhhcc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT--------ITTAYYR 92 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 92 (221)
..+|+++|.+|+|||||++++.+..+.... .....+..............+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS-PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc-CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 478999999999999999999987643221 1111222222222233346789999999653322 2334578
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CeEEEEecCCCCCH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG-VEFFETSAKDNVNV 171 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 171 (221)
.+|++++|+|++++... ....+...+... +.|+++|+||+|+........+....+..... .+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999987221 122233334333 68999999999996433222233334433332 58999999999999
Q ss_pred HHHHHHHHHH
Q psy2300 172 KGVFERLVDI 181 (221)
Q Consensus 172 ~~l~~~i~~~ 181 (221)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 176
>KOG0096|consensus
Probab=99.87 E-value=4.1e-22 Score=142.09 Aligned_cols=186 Identities=24% Similarity=0.436 Sum_probs=162.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++++++|..|.||||++++.+.+.|...+.++.+..........+.+.+++..|||.|++.+..+...++-++.+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 57999999999999999999999999999999999999988888776667999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
+||+..+..+.++..|-..+.+.+ .+.|+++++||.|..+.. .......+.+..++.|+++|++.+-|+..-|-|+.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 999999999999999988887665 579999999999985543 12233445566788999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCccccC
Q psy2300 180 DIICDKMSESLDSDPNLVAGPKGTRLTEQ 208 (221)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.+...-..++..++...++....+...+
T Consensus 166 rKl~G~p~Lefva~paLaPpev~~d~~~~ 194 (216)
T KOG0096|consen 166 RKLTGDPSLEFVAMPALAPPEVIMDYWLQ 194 (216)
T ss_pred hhhcCCCCeEEEeccccCCCeeeccchhh
Confidence 99999888888888888887776665544
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=4.5e-21 Score=152.54 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=104.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc--------ccchhhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR--------TITTAYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~ 91 (221)
..-.|+|+|.+|||||||+|+|++..+... .+...++.............++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~v-s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeec-CCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 345699999999999999999998875322 2222222222222122233689999999954321 2233457
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CeEEEEecCCCCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG-VEFFETSAKDNVN 170 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 170 (221)
..+|++++|+|+++.... .....+..+.. .+.|+++|+||+|+.............+....+ .+++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 889999999999883221 12223333332 368999999999996432222233444444444 5799999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIIC 183 (221)
Q Consensus 171 i~~l~~~i~~~~~ 183 (221)
+++++++|.+.+.
T Consensus 159 v~~L~~~L~~~l~ 171 (292)
T PRK00089 159 VDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999888763
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=7.8e-21 Score=164.73 Aligned_cols=157 Identities=19% Similarity=0.210 Sum_probs=111.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee--eEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
.+...|+|+|+.++|||||+++|....+........+.+ .+...+..++....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 466899999999999999999999877644333323222 222333333445789999999999999999889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHhC--CeEEEEecCC
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHL-------AESLG--VEFFETSAKD 167 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~ 167 (221)
+|+|+|+++....+....+ ..+.. .+.|++|++||+|+.... .+..... ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k~---~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQA---ANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHHh---cCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999874322222222 22222 479999999999996532 2222221 12223 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy2300 168 NVNVKGVFERLVDII 182 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~ 182 (221)
|.|+++++++|....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999987753
No 179
>KOG1673|consensus
Probab=99.86 E-value=4e-21 Score=132.76 Aligned_cols=164 Identities=24% Similarity=0.505 Sum_probs=140.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
-.+||.++|++..|||||+-++.++.+..++..+.|..+..+++.+.+..+.+.+||.+|++++..+......++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 47999999999999999999999999988888999999999999999999999999999999999988888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC----C-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED----E-RVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~----~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
+||++.+..+..+..|+.+-..... ..--++|++|.|+-- . .+.-...++.+++..+.++|+||+.+..|+..+
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~Nk-tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNK-TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCC-ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 9999999999999999999877653 333467899999621 1 111123466778888999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2300 175 FERLVDIICD 184 (221)
Q Consensus 175 ~~~i~~~~~~ 184 (221)
|..+..++..
T Consensus 178 FK~vlAklFn 187 (205)
T KOG1673|consen 178 FKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHhC
Confidence 9988777654
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=2.1e-20 Score=163.39 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=109.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
..+...|+|+|+.++|||||+++|....+.......++.+.....+..+ +..++||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 3467889999999999999999998877654433333333333334333 36799999999999999998889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHH-------HHHHhC--CeEEEEecCCC
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKH-------LAESLG--VEFFETSAKDN 168 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~ 168 (221)
|+|+|+++...-+....| ..... .+.|++|++||+|+.+.. .+.... +...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i-~~a~~---~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-NHAKA---AGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH-HHHHh---cCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999999874322222222 22222 479999999999996532 122211 122233 68999999999
Q ss_pred CCHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVD 180 (221)
Q Consensus 169 ~gi~~l~~~i~~ 180 (221)
.|+++++++|..
T Consensus 438 ~GI~eLle~I~~ 449 (787)
T PRK05306 438 EGIDELLEAILL 449 (787)
T ss_pred CCchHHHHhhhh
Confidence 999999999875
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=3e-21 Score=144.06 Aligned_cols=159 Identities=21% Similarity=0.241 Sum_probs=106.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCc----------------cccceeeee--EEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSA----------------FVSTVGIDF--KVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
..++|+++|+.++|||||+.+|+...-... .....+.+. ....+........++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999985431100 001112222 23333212345789999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc-CHHHHH-HHHHHh---
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI-SFERGK-HLAESL--- 156 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~-~~~~~~--- 156 (221)
.|.......+..+|++|+|+|+.++.... ....+..+... +.|++|++||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 88887888899999999999998764322 33344444444 7899999999999621110 011111 232333
Q ss_pred ---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 157 ---GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 157 ---~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.++++++||.+|.|+++|++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 24799999999999999999988764
No 182
>KOG0074|consensus
Probab=99.86 E-value=2.6e-21 Score=131.63 Aligned_cols=156 Identities=22% Similarity=0.330 Sum_probs=121.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|..++|||||++.|..... ....||.| +..+++..+ +.+++++||++|+...+..|..|+.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 5789999999999999999999998773 44566666 555555544 4589999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHH-HHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDMEDERVISFERGKHLA-----ESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~-l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (221)
||+|.+|...|+++...+.. +...+....|+++..||.|+..+..+ ++.-.-+ +...+.+-+||+.+++|+.
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~--eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV--EEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch--HHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 99999999999988875444 45555678999999999998543322 2111111 1112568899999999999
Q ss_pred HHHHHHHH
Q psy2300 173 GVFERLVD 180 (221)
Q Consensus 173 ~l~~~i~~ 180 (221)
+-.+|+..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 98888764
No 183
>KOG0076|consensus
Probab=99.85 E-value=1.6e-21 Score=137.21 Aligned_cols=159 Identities=27% Similarity=0.391 Sum_probs=121.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC---C----CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS---F----TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRG 93 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (221)
.+.|+++|..++|||||+.++.... + +....+|.+ ....++.+. ...+.|||.+|++..+++|..|+..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeec--cceeEEEEcCChHHHHHHHHHHHHH
Confidence 4789999999999999998875432 1 122333334 333344443 4679999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHH-HhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---Hh---CCeEEEEecC
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMEDERVISFERGKHLAE---SL---GVEFFETSAK 166 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~~~~~Sa~ 166 (221)
++++++++|++|++.|+.....+..+ ......+.|+++.+||.|+++... ..++..... .. ..++.++||.
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccchhh
Confidence 99999999999999998887755554 334457999999999999976532 333333332 22 3678999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy2300 167 DNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~~~~~ 185 (221)
+|+||++-.+|+...+.++
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999988776
No 184
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=2.6e-20 Score=159.95 Aligned_cols=158 Identities=18% Similarity=0.271 Sum_probs=113.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC--CC-----Ccc------ccceeeeeEEEEEEe-----CCeEEEEEEEeCCCcc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS--FT-----SAF------VSTVGIDFKVKTVFR-----HDKRVKLQIWDTAGQE 81 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~ 81 (221)
+.-+|+++|+.++|||||+.+|+... +. ..+ ..+.+++.....+.+ ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45689999999999999999998632 10 111 122344444333322 4456899999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC---
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV--- 158 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 158 (221)
.+...+..++..+|++|+|+|++++........|..... .+.|+++|+||+|+.+... ......+....++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence 998888889999999999999998765555555544332 3789999999999865321 1122333344454
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 159 EFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 159 ~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
.++++||++|.|+++++++|.+.+.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3899999999999999999987653
No 185
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=3.8e-20 Score=162.37 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc----------chhh
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI----------TTAY 90 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 90 (221)
.++|+++|++|||||||+|++++... ......+++...+...+...+..+.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47899999999999999999998764 34556777777776666666778999999997655321 1223
Q ss_pred c--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC
Q psy2300 91 Y--RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN 168 (221)
Q Consensus 91 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (221)
+ ..+|++++|+|+++.+.. + .+...+.+. +.|+++++||+|+.+.+.+. .+.+.+.+..+++++++|+++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~--l-~l~~ql~e~---giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN--L-YLTLQLLEL---GIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh--H-HHHHHHHHc---CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence 2 479999999999885432 2 233444443 79999999999986554443 4566777888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVDII 182 (221)
Q Consensus 169 ~gi~~l~~~i~~~~ 182 (221)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887754
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=1.3e-20 Score=157.56 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc--------ccccccchhhccCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ--------ERYRTITTAYYRGA 94 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~~ 94 (221)
+|+++|.+|+|||||+|+|++... .......+++...........+..+.+|||||. +.+......++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999998763 222334444443333332223356999999995 23344455678899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKG 173 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 173 (221)
|++++|+|+.++...... .+...+.+. +.|+++|+||+|+.+.... ..+ ....++ .++++||++|.|+++
T Consensus 80 d~vl~vvD~~~~~~~~d~-~i~~~l~~~---~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE-EIAKWLRKS---GKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred CEEEEEEeCCCCCCHHHH-HHHHHHHHh---CCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHH
Confidence 999999999875433321 233333332 7999999999998654321 112 234566 799999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 174 VFERLVDIICD 184 (221)
Q Consensus 174 l~~~i~~~~~~ 184 (221)
+++++.+.+.+
T Consensus 151 ll~~i~~~l~~ 161 (429)
T TIGR03594 151 LLDAILELLPE 161 (429)
T ss_pred HHHHHHHhcCc
Confidence 99998877643
No 187
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=6.1e-20 Score=138.41 Aligned_cols=118 Identities=18% Similarity=0.317 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCC-cEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGA-MGFILMY 101 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~vi~v~ 101 (221)
+|+++|+++||||+|+++|....+...+.+ +.................+.+||+||+..+...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTS-IEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCc-EeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999876554333 22222222222123456799999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHhh---CCCCCcEEEEEeCCCCCCC
Q psy2300 102 DVTNE-ESFTSIQDWITQIKTY---SWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 102 d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~Dl~~~ 141 (221)
|+.+. .++..+..|+..+... ...+.|+++++||+|+..+
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 6777776666554322 1258999999999998543
No 188
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=2.2e-20 Score=143.38 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=107.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc--------cccccchhhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE--------RYRTITTAYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~ 91 (221)
+.--|+++|.||+|||||+|++++.+..- ..+-..+|+.....-+.....++.|+||||.- .+.......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisI-vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEe-ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45679999999999999999999998532 33333444554444343456789999999932 2223344567
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CeEEEEecCCCCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG-VEFFETSAKDNVN 170 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 170 (221)
..+|+++||+|+++.-.- .....++.+.. .+.|+++++||+|.......-......+..... ..++++||++|.|
T Consensus 84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 899999999999874222 11223344443 368999999999986654421122222222223 3799999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIIC 183 (221)
Q Consensus 171 i~~l~~~i~~~~~ 183 (221)
++.+.+.+...+-
T Consensus 160 ~~~L~~~i~~~Lp 172 (298)
T COG1159 160 VDTLLEIIKEYLP 172 (298)
T ss_pred HHHHHHHHHHhCC
Confidence 9999998877764
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=5.7e-20 Score=153.91 Aligned_cols=159 Identities=21% Similarity=0.177 Sum_probs=107.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc-----------ch
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI-----------TT 88 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 88 (221)
..++|+++|.+|+|||||+++|++.... ...+..+++.......+...+..+.+|||||....... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERV-IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 5799999999999999999999976521 11223344444443333223456889999995432211 12
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHHH----hCCeEEEE
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGK-HLAES----LGVEFFET 163 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~~ 163 (221)
.++..+|++++|+|++++.+..+.. +...+.. .+.|+++++||+|+.+... .++.. ..... ..++++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEEE
Confidence 3578899999999999887665543 3333333 3799999999999864321 11111 11111 23689999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHh
Q psy2300 164 SAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
||++|.|++++++.+.+...+.
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988866543
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=3.4e-20 Score=155.30 Aligned_cols=147 Identities=21% Similarity=0.237 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee--eEEEEEEeCCeEEEEEEEeCCCccc--------ccccchhhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVFRHDKRVKLQIWDTAGQER--------YRTITTAYY 91 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 91 (221)
++|+++|.+|+|||||+++|.+.... ......+.+ ........++ ..+.+|||||.+. +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 58999999999999999999987632 122233333 3333344443 6799999999875 222344567
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVN 170 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 170 (221)
..+|++|+|+|+.++.+..+. .....+... +.|+++|+||+|+.+.. ....++ ...++ .++++||++|.|
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~-~~~~~l~~~---~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADE-EIAKILRKS---NKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGRG 149 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCCC
Confidence 899999999999875433221 122222232 79999999999975421 222222 34455 489999999999
Q ss_pred HHHHHHHHHH
Q psy2300 171 VKGVFERLVD 180 (221)
Q Consensus 171 i~~l~~~i~~ 180 (221)
++++++++..
T Consensus 150 v~~l~~~I~~ 159 (435)
T PRK00093 150 IGDLLDAILE 159 (435)
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 191
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=6.7e-20 Score=157.35 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=105.2
Q ss_pred cCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc------chhhc--cCCcEEEE
Q psy2300 28 GNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI------TTAYY--RGAMGFIL 99 (221)
Q Consensus 28 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~vi~ 99 (221)
|.+|+|||||+|++.+..+.....+..+.+.....+..++ ..+.+|||||...+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998875444344444334434444443 46899999998776543 23333 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|+|+++.+.. ..+...+.+ .+.|+++++||+|+.+...+. .+.+.+.+..+++++++||++|+|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874321 222233333 379999999999986555444 345677788899999999999999999999998
Q ss_pred HHH
Q psy2300 180 DII 182 (221)
Q Consensus 180 ~~~ 182 (221)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 754
No 192
>KOG4423|consensus
Probab=99.84 E-value=1.9e-22 Score=143.38 Aligned_cols=169 Identities=34% Similarity=0.584 Sum_probs=145.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeE-EEEEEEeCCCcccccccchhhccCCcE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR-VKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
++..++++|+|.-++|||+++++++...|...+..+++..+..+.+..+... +++++||+.|++.+..+..-+++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 4678999999999999999999999999999999999999888887766554 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhC----CCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYS----WDNAQVILVGNKCDMEDERVIS-FERGKHLAESLGV-EFFETSAKDNVN 170 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~g 170 (221)
.++|||+++...|+....|.+.+.... ....|+|+..||||+....... ......+.+.+|+ ..+++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999999874432 2356789999999996543322 3567788888887 799999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy2300 171 VKGVFERLVDIICDKM 186 (221)
Q Consensus 171 i~~l~~~i~~~~~~~~ 186 (221)
++|.-+.+.+.+.-+-
T Consensus 182 i~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 182 IPEAQRELVEKILVND 197 (229)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999998877654
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=7e-20 Score=132.14 Aligned_cols=151 Identities=18% Similarity=0.125 Sum_probs=101.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc-------cchhhccCCcEE
Q psy2300 26 IIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT-------ITTAYYRGAMGF 97 (221)
Q Consensus 26 vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~v 97 (221)
++|++|+|||||++++.+..... .................. ....+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999875431 112222222222222222 146799999999765443 333477899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFE---RGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
++|+|+.+........ +...... .+.|+++++||+|+......... .........+.+++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877665554 3333333 48999999999998654322211 112222333578999999999999999
Q ss_pred HHHHHHH
Q psy2300 175 FERLVDI 181 (221)
Q Consensus 175 ~~~i~~~ 181 (221)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 194
>KOG0072|consensus
Probab=99.84 E-value=3.3e-21 Score=131.53 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=121.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
+...+|+++|..|+|||+++.++.-... ....|+++ +.+..+.. ++..+++||.+|+-..+..|+.|+.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgev-vttkPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 3678999999999999999988876654 23445555 44444433 6688999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHL-----AESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 172 (221)
||+|.+|.+.+.-... +...+.+....+..++|++||+|..... ...++... .+..-+.+|.+||.+|+|++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 9999999887766655 4444544445678899999999986532 22222111 12222689999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2300 173 GVFERLVDIICDK 185 (221)
Q Consensus 173 ~l~~~i~~~~~~~ 185 (221)
+..+|+.+.+.++
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887653
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=7.3e-20 Score=160.89 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=107.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc--------ccccchhhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER--------YRTITTAYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 91 (221)
...+|+++|.+|+|||||+|+|++... ....++++++...........+..+.+|||||.+. +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 357899999999999999999998763 22344556665555444333346789999999653 223344567
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVN 170 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 170 (221)
..+|++|+|+|+++.-...+ ..|...+.. .+.|+++|+||+|+.... .....+. ..+. ..+++||++|.|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGRG 423 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCCC
Confidence 89999999999986422211 234455544 389999999999985431 1112221 2233 467999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIICD 184 (221)
Q Consensus 171 i~~l~~~i~~~~~~ 184 (221)
+++++++|++.+.+
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999987744
No 196
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=1.3e-19 Score=154.70 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=104.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccc----ceeeeeEEEEEE------------eCCeEEEEEEEeCCCccccc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS----TVGIDFKVKTVF------------RHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~~ 84 (221)
..-|+++|++++|||||+++|.+..+...... +.+.++...... +......+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999998765432211 122222111100 00011238899999999999
Q ss_pred ccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc----c--------CHHHH
Q psy2300 85 TITTAYYRGAMGFILMYDVTN---EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV----I--------SFERG 149 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----~--------~~~~~ 149 (221)
.++..++..+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+..... . .....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999889999999999999987 44444432 2222 3789999999999853100 0 00000
Q ss_pred ------------HHHHH------------Hh--CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 150 ------------KHLAE------------SL--GVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 150 ------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
..+.. .. .++++++||++|+|+++++++|.......+
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 01110 01 258999999999999999998876654433
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=1.6e-19 Score=158.68 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=106.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccc-c
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER----------YRTI-T 87 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 87 (221)
..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++. .+.+|||||... +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988642 222222223333333444444 467999999532 1111 1
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-Hh----CCeEEE
Q psy2300 88 TAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAE-SL----GVEFFE 162 (221)
Q Consensus 88 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~----~~~~~~ 162 (221)
..+++.+|++++|+|++++.+..+... +..+.. .+.|+++|+||+|+.+... .+....... .. ..++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999999877777653 333333 3799999999999965322 112222111 11 246799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHh
Q psy2300 163 TSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
+||++|.|++++++.+.+.+.+.
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998887653
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=5e-19 Score=126.35 Aligned_cols=155 Identities=23% Similarity=0.338 Sum_probs=116.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc--------cc----cceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSA--------FV----STVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI 86 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (221)
-...||+|.|+.++||||++++++....... .. .|..+++....+ + .+..++++|||||+++..+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHHHHHH
Confidence 3578999999999999999999998763111 00 122233333222 2 2256899999999999999
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh--CCeEEEEe
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESL--GVEFFETS 164 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 164 (221)
|+.+++++.++|+++|.+.+..+ +....+..+.... ..|++|.+||+|+.++ .+.+..+++.... .+++++.+
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999998877 4444444443331 2999999999999775 3456666666655 78999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy2300 165 AKDNVNVKGVFERLVDI 181 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~ 181 (221)
+..++|..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988876554
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=1.4e-19 Score=150.89 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=105.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC--C---------------------------ccccceeeeeEEEEEEeCCeE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT--S---------------------------AFVSTVGIDFKVKTVFRHDKR 69 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~ 69 (221)
...++|+++|++++|||||+++|+...-. . ......+++.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45799999999999999999999843210 0 011134666666666666667
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhH-HHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc----c
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV----I 144 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----~ 144 (221)
+.+.||||||++.|.......+..+|++++|+|++++.++ .....++..+... ...|++|++||+|+.+... .
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 8899999999988766555667899999999999873122 1122222333332 1346999999999965221 1
Q ss_pred CHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2300 145 SFERGKHLAESLG-----VEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 145 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 176 (221)
..++...++...+ ++++++||++|+|++++++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 1234445554444 4799999999999987543
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1.3e-19 Score=151.02 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=105.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------------------ccccceeeeeEEEEEEeCCeE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD--SFTS---------------------------AFVSTVGIDFKVKTVFRHDKR 69 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 69 (221)
...++|+++|+.++|||||+.+|+.. .... ......+++.......+....
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 45799999999999999999999852 1110 011122455555555555566
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHH--HHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc---
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSI--QDWITQIKTYSWDNAQVILVGNKCDMEDERVI--- 144 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--- 144 (221)
+.+.|||+||++.|.......+..+|++++|+|+++++++... ..++...... ...+++|++||+|+.+....
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence 8899999999998876666677899999999999987533111 1122222222 24579999999999642211
Q ss_pred -CHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy2300 145 -SFERGKHLAESLG-----VEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 145 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 175 (221)
..++...+++..+ ++++++||++|.|+.+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1234555565554 579999999999998744
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=146.83 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc---------cccchhhcc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY---------RTITTAYYR 92 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 92 (221)
..|+++|-||+|||||.|||++... .-...++|+|.+.........+..+.++||+|-+.. .......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 5799999999999999999999874 345566677766655544445567999999995522 233445678
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNV 171 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 171 (221)
.||++|||+|....-+-.+- .....+.. .+.|+++|+||+|-... .+...+| -.+|+ .++.+||.+|.|+
T Consensus 83 eADvilfvVD~~~Git~~D~-~ia~~Lr~---~~kpviLvvNK~D~~~~----e~~~~ef-yslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 83 EADVILFVVDGREGITPADE-EIAKILRR---SKKPVILVVNKIDNLKA----EELAYEF-YSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHh---cCCCEEEEEEcccCchh----hhhHHHH-HhcCCCCceEeehhhccCH
Confidence 99999999998764322111 12222332 37999999999997422 1222222 33454 7999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2300 172 KGVFERLVDIIC 183 (221)
Q Consensus 172 ~~l~~~i~~~~~ 183 (221)
.+|++++++.+.
T Consensus 154 ~dLld~v~~~l~ 165 (444)
T COG1160 154 GDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHhhcC
Confidence 999999988874
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=6.9e-19 Score=150.74 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=113.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYAD--DSFTSA------------FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT 85 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 85 (221)
...+|+++|+.++|||||+++|+. +.+... ...+.++++......+.+.++.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356899999999999999999996 333221 123456777777777777778999999999999998
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHH-------hC
Q psy2300 86 ITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI-SFERGKHLAES-------LG 157 (221)
Q Consensus 86 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~ 157 (221)
.+..+++.+|++++|+|+.+...... ..++..+.. .+.|.++++||+|+.+.+.. ..++...+... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 89999999999999999987533222 233333333 37899999999998654321 12233333322 24
Q ss_pred CeEEEEecCCCC----------CHHHHHHHHHHHH
Q psy2300 158 VEFFETSAKDNV----------NVKGVFERLVDII 182 (221)
Q Consensus 158 ~~~~~~Sa~~~~----------gi~~l~~~i~~~~ 182 (221)
++++.+||.+|. |+..+++.|++.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 679999999998 4677776655544
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=4.1e-19 Score=129.60 Aligned_cols=152 Identities=14% Similarity=0.195 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc----------ccccchhhcc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER----------YRTITTAYYR 92 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 92 (221)
.|+++|.+|+|||||++.+.+..+.....++.+.+........+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997665566666666655555544433 788999999432 2333333443
Q ss_pred ---CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH--HhCCeEEEEec
Q psy2300 93 ---GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS--FERGKHLAE--SLGVEFFETSA 165 (221)
Q Consensus 93 ---~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~--~~~~~~~~~Sa 165 (221)
..+++++++|.++....... .....+... +.|+++++||+|+....... ........+ ....+++++|+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 35788999998765322211 122223332 68999999999985332211 112222222 23358999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy2300 166 KDNVNVKGVFERLVDI 181 (221)
Q Consensus 166 ~~~~gi~~l~~~i~~~ 181 (221)
+++.|+.+++++|.+.
T Consensus 154 ~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 154 LKGQGIDELRALIEKW 169 (170)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998875
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=1.6e-19 Score=136.73 Aligned_cols=149 Identities=23% Similarity=0.194 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc-----------------------------cccceeeeeEEEEEEeCCeEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSA-----------------------------FVSTVGIDFKVKTVFRHDKRVKLQ 73 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (221)
+|+++|++|+|||||+++|+...-... .....+++.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975421000 000123444444444444556789
Q ss_pred EEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC----HHHH
Q psy2300 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS----FERG 149 (221)
Q Consensus 74 i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~ 149 (221)
+|||||++.+...+...+..+|++++|+|++++..-. .......+... ...++++|+||+|+.+..... ..+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 9999999887665666788999999999998753211 11222222222 124578899999986432211 1234
Q ss_pred HHHHHHhC---CeEEEEecCCCCCHHHH
Q psy2300 150 KHLAESLG---VEFFETSAKDNVNVKGV 174 (221)
Q Consensus 150 ~~~~~~~~---~~~~~~Sa~~~~gi~~l 174 (221)
..+....+ .+++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 44445555 35899999999999753
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=2.4e-19 Score=153.64 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCCCc------------cccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD--SFTSA------------FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITT 88 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 88 (221)
+|+++|+.++|||||+++|+.. .+... .....+++.......+.+.++.+.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999863 22111 112335666665555556678999999999999988888
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HhCCeE
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI-SFERGKHLAE-------SLGVEF 160 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~ 160 (221)
.++..+|++++|+|+.+.. ......|+..+... +.|++|++||+|+.+.+.. -.++...+.. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 8999999999999998742 34444555555543 7899999999999654321 1233333332 234689
Q ss_pred EEEecCCCC----------CHHHHHHHHHHHH
Q psy2300 161 FETSAKDNV----------NVKGVFERLVDII 182 (221)
Q Consensus 161 ~~~Sa~~~~----------gi~~l~~~i~~~~ 182 (221)
+++||++|. |+..+|+.|++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 7888888777654
No 206
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=2.7e-19 Score=148.06 Aligned_cols=161 Identities=14% Similarity=0.178 Sum_probs=104.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccceeeeeEEE--------------------EEEeCC------eEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAF-VSTVGIDFKVK--------------------TVFRHD------KRVKL 72 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~--------------------~~~~~~------~~~~~ 72 (221)
..++|+++|+.++|||||+++|.+....... ....+++.... ....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999999754221100 00111111110 000011 13679
Q ss_pred EEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--CHHHHH
Q psy2300 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--SFERGK 150 (221)
Q Consensus 73 ~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~ 150 (221)
.+||+||++.|...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+.... ..++..
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 99999999999888877888899999999998643111222223333332 23579999999999653221 123333
Q ss_pred HHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 151 HLAESL---GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 151 ~~~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.+.... +++++++||++|+|+++++++|...+
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 444332 56899999999999999999988754
No 207
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=141.10 Aligned_cols=161 Identities=22% Similarity=0.212 Sum_probs=118.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc----------cccccc-ch
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ----------ERYRTI-TT 88 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~-~~ 88 (221)
..++|+++|-||+|||||+|+|++..- .-..+..|+|.......+...+..+.++||+|- +.|... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 469999999999999999999999873 334566788888887777655667999999993 222221 22
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----hC-CeEEEE
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAES----LG-VEFFET 163 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~ 163 (221)
..+..+|++++|+|++.+-+.++. .....+.+ .+.++++++||+|+.+......++.+..... .+ .+++++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 357889999999999987665554 33344444 3899999999999866533344443333322 22 589999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHh
Q psy2300 164 SAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
||++|.|+.++|+.+.......
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EecCCCChHHHHHHHHHHHHHh
Confidence 9999999999999988776543
No 208
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=3.6e-18 Score=131.26 Aligned_cols=151 Identities=21% Similarity=0.213 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc-------ccchhhccCCc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR-------TITTAYYRGAM 95 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 95 (221)
+|+++|.+|+|||||+++|.+........+..+.+.....+..+ +..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999999876332222222222333333333 4679999999964322 12234688999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------Hhh-----------
Q psy2300 96 GFILMYDVTNEE-SFTSIQDWITQI-----------------------------------------KTY----------- 122 (221)
Q Consensus 96 ~vi~v~d~~~~~-s~~~~~~~~~~l-----------------------------------------~~~----------- 122 (221)
++++|+|++++. ....+...+... .++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 333232222111 111
Q ss_pred -------------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 123 -------------SWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 123 -------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
...-.|+++|+||+|+.. .++...++.. .+++++||++|.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 012358999999999853 3344444432 4689999999999999999988754
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=2.5e-18 Score=128.47 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC-------C-------CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSF-------T-------SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI 86 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (221)
.++|+++|+.++|||||+++|+.... . .......+++.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999985310 0 011123455555555555556678899999999887776
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHh-----C
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVIS---FERGKHLAESL-----G 157 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~ 157 (221)
....+..+|++++|+|+...-. ......+..+... +.| +++++||+|+....... .++...+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7777889999999999986432 2223334444443 566 78999999985322211 12344444443 3
Q ss_pred CeEEEEecCCCCCH
Q psy2300 158 VEFFETSAKDNVNV 171 (221)
Q Consensus 158 ~~~~~~Sa~~~~gi 171 (221)
++++++||++|.++
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 68999999999985
No 210
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=7.9e-19 Score=145.20 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=102.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccceeeeeEEE----EE------------E----eC------CeEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF-VSTVGIDFKVK----TV------------F----RH------DKRV 70 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~----~~------------~----~~------~~~~ 70 (221)
..+.++|+++|+.++|||||+.+|.+....... ....+++.... .. . .+ ....
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 346799999999999999999999653211110 11112222211 00 0 00 0125
Q ss_pred EEEEEeCCCcccccccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--CHH
Q psy2300 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE-SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--SFE 147 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~ 147 (221)
.+.||||||++.+..........+|++++|+|++++. ..... ..+..+... ...|+++|+||+|+.+.... ..+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMALDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999887765555566789999999999643 11211 222223222 23479999999999653321 123
Q ss_pred HHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 148 RGKHLAESL---GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 148 ~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
+...++... +.+++++||++|.|+++++++|.+.+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 344444332 46899999999999999999987755
No 211
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=9.8e-19 Score=141.75 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=113.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chhhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI--------TTAYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 91 (221)
.-++|+++|.||+|||||+|.|++... .-+..-.|+|+++....++-.++.+.+.||+|..+-... ....+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~-AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDR-AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCc-eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 458999999999999999999999873 234445588888888777777789999999994422211 22357
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
..||.+++|+|++.+..-.+.. .+. ....+.|+++|.||.|+......... ....+.+++.+|+++|+|+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGL 364 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCH
Confidence 8999999999999862222221 111 22358999999999999665332111 1122347899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2300 172 KGVFERLVDIICDK 185 (221)
Q Consensus 172 ~~l~~~i~~~~~~~ 185 (221)
+.+.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999988877665
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=2e-18 Score=148.71 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS---FTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
+-|+++|+.++|||||+++|++.. ++.+....++++.....+...+ +..+.|||+||++.|...+...+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 358999999999999999998643 2222222222222222222222 245899999999999877777889999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcccC--HHHHHHHHHHhC---CeEEEEecCCCC
Q psy2300 99 LMYDVTNE---ESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVIS--FERGKHLAESLG---VEFFETSAKDNV 169 (221)
Q Consensus 99 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~ 169 (221)
+|+|+++. ++.+.+ ..+... +.| ++||+||+|+.+..... .++...+....+ .+++++||++|.
T Consensus 80 LVVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 80 LVVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 99999873 333333 223332 455 57999999996532221 233444444444 589999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDIIC 183 (221)
Q Consensus 170 gi~~l~~~i~~~~~ 183 (221)
|+++++++|.+...
T Consensus 153 gI~~L~~~L~~~~~ 166 (614)
T PRK10512 153 GIDALREHLLQLPE 166 (614)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999876543
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=1.9e-18 Score=148.09 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=102.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc----cceeeeeEEEEEEe--CCeE-----E-----EEEEEeCCCcccc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV----STVGIDFKVKTVFR--HDKR-----V-----KLQIWDTAGQERY 83 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~g~~~~ 83 (221)
+...|+++|++++|||||+++|.+..+..... .+.+.++....... .+.. . .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 44579999999999999999998664322211 12222222111100 0111 1 2689999999999
Q ss_pred cccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc----cC-----------
Q psy2300 84 RTITTAYYRGAMGFILMYDVTN---EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV----IS----------- 145 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----~~----------- 145 (221)
..++...+..+|++++|+|+++ +++++.+.. +.. .+.|+++++||+|+..... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9888888899999999999987 555554432 222 3799999999999842100 00
Q ss_pred -HH-------HHHHHHHHh---------------CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 146 -FE-------RGKHLAESL---------------GVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 146 -~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.+ +........ .++++++||++|+|++++++.+...+...+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l 221 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL 221 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence 00 010111111 257899999999999999998876544333
No 214
>COG2262 HflX GTPases [General function prediction only]
Probab=99.80 E-value=3e-18 Score=136.67 Aligned_cols=168 Identities=16% Similarity=0.141 Sum_probs=121.1
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc---------cc
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ---------ER 82 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~ 82 (221)
.+..........|+++|..|+|||||+|+|++........-..+.+.....+.+.+ +..+.+.||-|. +.
T Consensus 183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~A 261 (411)
T COG2262 183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEA 261 (411)
T ss_pred HhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHH
Confidence 34444455788999999999999999999998775444334444444455555543 356889999983 22
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEE
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFE 162 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (221)
|.+..+ ....+|++++|+|+++|...+.+......+........|+++|.||+|+..... .........-..+.
T Consensus 262 FksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~ 335 (411)
T COG2262 262 FKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVF 335 (411)
T ss_pred HHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEE
Confidence 333222 357899999999999998888888888888777666799999999999754322 11111111115899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 163 TSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
+||++|+|++.|++.|.+.+....
T Consensus 336 iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 336 ISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred EEeccCcCHHHHHHHHHHHhhhcc
Confidence 999999999999999999887553
No 215
>KOG1489|consensus
Probab=99.79 E-value=2.2e-18 Score=132.81 Aligned_cols=156 Identities=14% Similarity=0.216 Sum_probs=111.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeE-EEEEEEeCCCccc-------ccccchhhcc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR-VKLQIWDTAGQER-------YRTITTAYYR 92 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~-------~~~~~~~~~~ 92 (221)
...|.+||.||+|||||+++++..+ +...+...+|..+..-.+.... .++++=|+||.-+ .......+++
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 3458999999999999999999988 3444444444444443333333 3499999999321 1122233567
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecC
Q psy2300 93 GAMGFILMYDVTNE---ESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAK 166 (221)
Q Consensus 93 ~~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 166 (221)
.++.++||+|++.. ..++.++.+..+++.+. ....|.++|+||+|+++.+. ..+..+.+...- .++++||+
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAK 350 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeec
Confidence 89999999999987 78888888777775544 46899999999999963321 223455555543 49999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy2300 167 DNVNVKGVFERLVDI 181 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~ 181 (221)
+++|+.++++.|.+.
T Consensus 351 ~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 351 SGEGLEELLNGLREL 365 (366)
T ss_pred cccchHHHHHHHhhc
Confidence 999999999887653
No 216
>KOG1423|consensus
Probab=99.79 E-value=2.8e-18 Score=131.54 Aligned_cols=169 Identities=15% Similarity=0.187 Sum_probs=113.1
Q ss_pred hhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc---------
Q psy2300 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE--------- 81 (221)
Q Consensus 11 ~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------- 81 (221)
+.+.+++..+.+.|+|+|.||+|||||.|.+.+.+..+......+++....-+ +.....++.|+||||--
T Consensus 62 esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~ 140 (379)
T KOG1423|consen 62 ESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHH 140 (379)
T ss_pred cCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHH
Confidence 34444556689999999999999999999999999776655555544444444 33455789999999921
Q ss_pred ---cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc-------------ccC
Q psy2300 82 ---RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER-------------VIS 145 (221)
Q Consensus 82 ---~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~-------------~~~ 145 (221)
.+....+..+..||++++|+|+++.....+- ..+..+..+. ..|-++|+||.|....+ .+.
T Consensus 141 l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~ 217 (379)
T KOG1423|consen 141 LMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA 217 (379)
T ss_pred HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence 1112334567889999999999963322221 3445556664 89999999999964321 111
Q ss_pred ---HHHHHHHHHHh---------CC----eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 146 ---FERGKHLAESL---------GV----EFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 146 ---~~~~~~~~~~~---------~~----~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
.+-.+.+.... ++ .+|.+||++|+||+++.++|.....
T Consensus 218 ~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 218 KLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 11111111111 11 3899999999999999998876553
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=2.7e-18 Score=132.17 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=82.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----C---------c---cccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFT----S---------A---FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI 86 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~----~---------~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (221)
+|+++|+.|+|||||+++|+...-. . . .....+.+.......+...+.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999763210 0 0 0112233444444444556678999999999988888
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
+..+++.+|++++|+|+.+.... ....++..+... +.|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 88899999999999999986543 333444444443 799999999999853
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=3.6e-18 Score=119.30 Aligned_cols=134 Identities=26% Similarity=0.346 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc----cccccchhhccCCcEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE----RYRTITTAYYRGAMGFI 98 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~vi 98 (221)
||+|+|+.|||||||+++|.+... .+..|..+.+. =.++||||.- .+.........+||+|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998763 34444432222 1257999832 22222334457899999
Q ss_pred EEEECCChhh-HHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q psy2300 99 LMYDVTNEES-FTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 99 ~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~ 176 (221)
+|.|++++.+ |..- + ... -+.|+|=|+||+|+... ....+..+++.+.-|+ .+|++|+.+|+|+++|.+
T Consensus 69 ll~dat~~~~~~pP~--f----a~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 69 LLQDATEPRSVFPPG--F----ASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEecCCCCCccCCch--h----hcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999998642 2111 1 111 16899999999999732 2356677788888887 689999999999999999
Q ss_pred HHH
Q psy2300 177 RLV 179 (221)
Q Consensus 177 ~i~ 179 (221)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=9.4e-19 Score=133.53 Aligned_cols=148 Identities=17% Similarity=0.127 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--C---------------------------CccccceeeeeEEEEEEeCCeEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF--T---------------------------SAFVSTVGIDFKVKTVFRHDKRVKLQ 73 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (221)
+|+++|+.++|||||+.+|+...- . .......+++.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999863210 0 00111234555555555555668899
Q ss_pred EEeCCCcccccccchhhccCCcEEEEEEECCChhh------HHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC--cccC
Q psy2300 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEES------FTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE--RVIS 145 (221)
Q Consensus 74 i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~--~~~~ 145 (221)
+|||||+..+...+...+..+|++++|+|+++... .......+...... ...|+++++||+|+... ....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999988776666667788999999999987421 11112222222222 24689999999999632 1111
Q ss_pred HH----HHHHHHHHhC-----CeEEEEecCCCCCHH
Q psy2300 146 FE----RGKHLAESLG-----VEFFETSAKDNVNVK 172 (221)
Q Consensus 146 ~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~ 172 (221)
.+ ++..+....+ ++++++||++|+|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 2222333332 579999999999987
No 220
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=122.05 Aligned_cols=164 Identities=17% Similarity=0.220 Sum_probs=117.3
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC----------ccc
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG----------QER 82 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~ 82 (221)
..+-|.+...-|+++|-+|+|||||||+|++++-..-...|+|.|.....+.+++. +.+.|.|| .+.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence 34556667889999999999999999999998755667788999999888877764 77999999 345
Q ss_pred ccccchhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh---
Q psy2300 83 YRTITTAYYRG---AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESL--- 156 (221)
Q Consensus 83 ~~~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--- 156 (221)
+..+...|+.. -.++++++|+..+-...+. +.+..+... +.|++|++||+|.....+.. .......+..
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCC
Confidence 66666666653 4578889998765433222 233333333 89999999999986643322 1112222222
Q ss_pred -CCe--EEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 157 -GVE--FFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 157 -~~~--~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
... ++..|+.++.|++++...|.+.+..
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222 7889999999999999988887654
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=8.1e-18 Score=138.74 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=105.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT--------------SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
...++|+++|+.++|||||+++|++.... .......+++.......+......+.++||||++.|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 35799999999999999999999863100 0111234556666555555556678999999999887
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHhC---
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVIS---FERGKHLAESLG--- 157 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 157 (221)
......+..+|++++|+|+.+...-. ...++..+... +.| +++++||+|+.+..... .++...+....+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 76666778899999999998642212 22333333333 677 67899999986432221 123444544444
Q ss_pred --CeEEEEecCCCC--------CHHHHHHHHHHH
Q psy2300 158 --VEFFETSAKDNV--------NVKGVFERLVDI 181 (221)
Q Consensus 158 --~~~~~~Sa~~~~--------gi~~l~~~i~~~ 181 (221)
++++++||++|. ++.++++.+.+.
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 579999999983 455655555543
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.3e-18 Score=144.19 Aligned_cols=157 Identities=19% Similarity=0.210 Sum_probs=116.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc------ccccchhhc--c
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER------YRTITTAYY--R 92 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------~~~~~~~~~--~ 92 (221)
..+|+++|.||+|||||.|++++.. ......+|+|...++......+..+++.|+||--. -....++++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3569999999999999999999988 45556667777777776665666799999999322 223334444 3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
..|+++-|+|+++-+. ++.-.++ +.+. +.|++++.|++|..+.+.+. -+.+++.+..|+|+++++|++|+|++
T Consensus 81 ~~D~ivnVvDAtnLeR--nLyltlQ-LlE~---g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLER--NLYLTLQ-LLEL---GIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHH--HHHHHHH-HHHc---CCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 5799999999998653 2222222 2333 89999999999986655444 34566778889999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2300 173 GVFERLVDIICDKM 186 (221)
Q Consensus 173 ~l~~~i~~~~~~~~ 186 (221)
++.+.+.+...++.
T Consensus 154 ~l~~~i~~~~~~~~ 167 (653)
T COG0370 154 ELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHhccccc
Confidence 99998887554443
No 223
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=4.2e-18 Score=129.51 Aligned_cols=113 Identities=24% Similarity=0.262 Sum_probs=79.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc-----------------cccceeeeeEEEEEEe-----CCeEEEEEEEeCCCc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSA-----------------FVSTVGIDFKVKTVFR-----HDKRVKLQIWDTAGQ 80 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~ 80 (221)
+|+++|+.++|||||+++|+....... .....+++........ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987543211 0111223332222221 345688999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9888778888999999999999987665533 234343332 369999999999974
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=8e-18 Score=138.86 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=105.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC-------CC-------CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD-------SF-------TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
.+.++|+++|++++|||||+++|+.. .+ ........+++.......+.....++.|+||||++.|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 46799999999999999999999862 10 00111234555555555555555678999999998887
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHhC---
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVI-LVGNKCDMEDERVIS---FERGKHLAESLG--- 157 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 157 (221)
......+..+|++++|+|+.+... .....++..+... +.|.+ +++||+|+.+..... ..+...+...++
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 766677889999999999987432 2222333444332 67855 679999996432211 123444555443
Q ss_pred --CeEEEEecCCCC----------CHHHHHHHHHHH
Q psy2300 158 --VEFFETSAKDNV----------NVKGVFERLVDI 181 (221)
Q Consensus 158 --~~~~~~Sa~~~~----------gi~~l~~~i~~~ 181 (221)
++++++|+.+|. ++.+|++.|.+.
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 678999999985 566666665543
No 225
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=129.41 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=115.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc-----ccccccch---hhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ-----ERYRTITT---AYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----~~~~~~~~---~~~ 91 (221)
....|+|.|+||+|||||++++++.+ ++..+.+.+|..+...+++....+++++||||- ++.+.+.. ..+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 56789999999999999999999998 555555555566666666666678999999992 22222211 122
Q ss_pred -cCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCC
Q psy2300 92 -RGAMGFILMYDVTN--EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKD 167 (221)
Q Consensus 92 -~~~d~vi~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (221)
.-.++|+|++|.+. ..+.+.-..++..+.... ..|+++|+||+|..+... .++........+. ....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeee
Confidence 23789999999986 456677667888887776 599999999999864433 3344433444444 467889999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2300 168 NVNVKGVFERLVDIICDK 185 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~ 185 (221)
+.+++.+.+.+.....+.
T Consensus 321 ~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 321 GCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhhHHHHHHHHHHHhhch
Confidence 999999888887765544
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.6e-17 Score=137.17 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=99.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC-------------C-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSF-------------T-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
.+.++|+++|+.++|||||+++|+.... . .......+++.......++..+.++.||||||++.|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 4679999999999999999999974210 0 0112224556666666665566789999999999887
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHhC---
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVI-LVGNKCDMEDERVIS---FERGKHLAESLG--- 157 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 157 (221)
......+..+|++++|+|+.+..... ....+..+... +.|.+ +++||+|+.+..... .++...++..++
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 66666677899999999998742222 22333333333 66755 689999986533211 124555565554
Q ss_pred --CeEEEEecCCCC
Q psy2300 158 --VEFFETSAKDNV 169 (221)
Q Consensus 158 --~~~~~~Sa~~~~ 169 (221)
++++++|+.+|.
T Consensus 166 ~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 166 DDTPIIRGSALKAL 179 (394)
T ss_pred cCccEEECcccccc
Confidence 689999999885
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=3.5e-17 Score=124.90 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccc------------eeeeeEEE--EE----------------------EeC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVST------------VGIDFKVK--TV----------------------FRH 66 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~------------~~~~~~~~--~~----------------------~~~ 66 (221)
||+++|+.++|||||+.+|..+.+....... .|.+.... .+ ...
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976553311100 01110000 00 011
Q ss_pred CeEEEEEEEeCCCcccccccchhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 67 DKRVKLQIWDTAGQERYRTITTAYYR--GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
.....+.++|+||++.|.......+. .+|++++|+|+.++.. .....++..+... +.|+++++||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 12357899999999888665544443 6899999999886543 2223344444443 7899999999998543221
Q ss_pred C--HHHHHHHHHH--------------------------hCCeEEEEecCCCCCHHHHHHHHHH
Q psy2300 145 S--FERGKHLAES--------------------------LGVEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 145 ~--~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
. .++...+... ...++|.+|+.+|+|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 1122222221 0138999999999999999887743
No 228
>KOG0077|consensus
Probab=99.75 E-value=3.7e-18 Score=119.47 Aligned_cols=156 Identities=20% Similarity=0.289 Sum_probs=118.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...-|++++|..|+|||||++.|.++.. ..+.||.-.+.....+ .+.+++-+|.+|+..-+..|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 3456899999999999999999998875 4556665544444444 4578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHh-hCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH---HHh---C-----------CeE
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILVGNKCDMEDERVISFERGKHLA---ESL---G-----------VEF 160 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~---~-----------~~~ 160 (221)
+.+|+.|.+.|.+.+..+..+.. ....+.|+++.+||+|.+.+. +.++.+... ... + +.+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 99999999998888776555422 224689999999999997764 333322221 111 1 247
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy2300 161 FETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 161 ~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
|.||...+.|-.+.|.|+...
T Consensus 171 fmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEccCccceeeeehhhh
Confidence 889999999988888887654
No 229
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.75 E-value=5.2e-17 Score=126.62 Aligned_cols=164 Identities=18% Similarity=0.143 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc-------ccccchhhccCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER-------YRTITTAYYRGA 94 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 94 (221)
.-|.+||.||+|||||+++++..+..-...|.++..-..-.+..+ ..-.+.+=|+||--+ .......++..+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 348899999999999999999987333333333222222222222 234588899999311 111123356789
Q ss_pred cEEEEEEECCChh---hHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEE-EecCCC
Q psy2300 95 MGFILMYDVTNEE---SFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFE-TSAKDN 168 (221)
Q Consensus 95 d~vi~v~d~~~~~---s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~ 168 (221)
.++++|+|++..+ ..++...+..++..+. ..+.|.+||+||+|+....+........+.+..+...+. +|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999998533 4666666777776654 468999999999997655443333344444444543222 999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy2300 169 VNVKGVFERLVDIICDKM 186 (221)
Q Consensus 169 ~gi~~l~~~i~~~~~~~~ 186 (221)
+|++++...+.+.+.+..
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999999888775
No 230
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=7.5e-17 Score=133.66 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=101.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFT--------------SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 83 (221)
....++|+++|++++|||||+++|++..-. .......+++.......+..+..++.|.||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 456799999999999999999999864210 011122455555555555555567889999999888
Q ss_pred cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHhC--
Q psy2300 84 RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVIS---FERGKHLAESLG-- 157 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 157 (221)
.......+..+|++++|+|+.+... ......+..+... +.| +++++||+|+.+..... .+++..+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7767777889999999999986432 2223333344433 678 77899999996533211 123444444443
Q ss_pred ---CeEEEEecCCCCCH
Q psy2300 158 ---VEFFETSAKDNVNV 171 (221)
Q Consensus 158 ---~~~~~~Sa~~~~gi 171 (221)
++++++|+.+|.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 68999999999753
No 231
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.74 E-value=7.5e-17 Score=122.61 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCc------------cccceeeeeE--EEEEEeC--------CeEEEEEEEeCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF--TSA------------FVSTVGIDFK--VKTVFRH--------DKRVKLQIWDTA 78 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~--~~~------------~~~~~~~~~~--~~~~~~~--------~~~~~~~i~D~~ 78 (221)
+|+++|+.++|||||+.+|+...- ... .....+++.. ...+... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999975421 000 0011122222 2222222 336889999999
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 79 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
|+..|......+++.+|++++|+|+.+.........+ ..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence 9999998888899999999999999987554443222 22222 368999999999975
No 232
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.2e-16 Score=131.46 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=110.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCC---eEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD---KRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
+..-|+++|+-..|||||+..+-......... -++|..+..+.+.. ..-.++|+|||||+.|..++..-..-+|+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea--GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA--GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccC--CceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 34678999999999999999998877543322 24444444443332 22468999999999999999988899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC---------CeEEEEecCC
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG---------VEFFETSAKD 167 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 167 (221)
++||++++|.- ..+....+......+.|++|.+||+|.++.. +.........++ ..++++||++
T Consensus 82 aILVVa~dDGv----~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 82 AILVVAADDGV----MPQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEEEccCCc----chhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 99999999842 1122233333333599999999999997542 333333333333 4589999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy2300 168 NVNVKGVFERLVDIIC 183 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~ 183 (221)
|+|+++|++.+.-...
T Consensus 155 g~Gi~eLL~~ill~ae 170 (509)
T COG0532 155 GEGIDELLELILLLAE 170 (509)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999988765443
No 233
>PLN03126 Elongation factor Tu; Provisional
Probab=99.73 E-value=2.3e-16 Score=132.22 Aligned_cols=150 Identities=17% Similarity=0.091 Sum_probs=101.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCC------CCC--------ccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDS------FTS--------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (221)
.....++|+++|++++|||||+++|+... ... ......+++.......+..+..++.++|+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 34568999999999999999999998521 100 1122345555555544444556889999999998
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHh--
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVIS---FERGKHLAESL-- 156 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 156 (221)
|.......+..+|++++|+|+.+...- ....++..+... +.| +++++||+|+.+..... .+++..+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 887777778899999999999875322 223344444443 677 78899999996532211 12344444443
Q ss_pred ---CCeEEEEecCCCCC
Q psy2300 157 ---GVEFFETSAKDNVN 170 (221)
Q Consensus 157 ---~~~~~~~Sa~~~~g 170 (221)
+++++++|+.+|.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 46899999998854
No 234
>KOG0462|consensus
Probab=99.73 E-value=8.4e-17 Score=131.92 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=124.3
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCC--CC-----------ccccceeeeeEEEEEEe---CCeEEEEEEE
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSF--TS-----------AFVSTVGIDFKVKTVFR---HDKRVKLQIW 75 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~i~ 75 (221)
.....|.++.-++.++-+-..|||||..+|+...- +. +.+...|+|....+..+ ++..+.+.++
T Consensus 51 ~~~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLI 130 (650)
T KOG0462|consen 51 EFSLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLI 130 (650)
T ss_pred ccccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEee
Confidence 34445667788899999999999999999875321 00 12233466665554433 3445899999
Q ss_pred eCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHH
Q psy2300 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFER-GKHLAE 154 (221)
Q Consensus 76 D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~ 154 (221)
|||||..|.......+..|+++|+|+|++..-.-+...++...++. +..+|.|+||+|++.++....+. .+++..
T Consensus 131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~ 206 (650)
T KOG0462|consen 131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFD 206 (650)
T ss_pred cCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhc
Confidence 9999999988888889999999999999987666666666666654 89999999999998865433222 223333
Q ss_pred HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 155 SLGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 155 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
....+++.+||++|.|+++++++|++.+-
T Consensus 207 ~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 207 IPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred CCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 33357999999999999999999888763
No 235
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=3.9e-16 Score=117.25 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceee---eeEEEEEEeCCeEEEEEEEeCCCcccccccc-----hhhccC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI---DFKVKTVFRHDKRVKLQIWDTAGQERYRTIT-----TAYYRG 93 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~~~~ 93 (221)
++|+++|.+|+|||||+|.|++...+.......+. +.....+... ....+.+||+||........ ...+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 78999999999999999999986643322222221 1111111111 12368999999964322222 222577
Q ss_pred CcEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHHHHH----HhC
Q psy2300 94 AMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDERV-----------ISFERGKHLAE----SLG 157 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~~ 157 (221)
+|++++|.+. ++.... .|+..+... +.|+++|+||+|+..... .-.++.+..+. ..+
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 222232 355555554 689999999999832111 00111111111 212
Q ss_pred ---CeEEEEecC--CCCCHHHHHHHHHHHHHHhh
Q psy2300 158 ---VEFFETSAK--DNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 158 ---~~~~~~Sa~--~~~gi~~l~~~i~~~~~~~~ 186 (221)
-++|.+|+. .+.|+..+.+.|+..+.+..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 368999998 67999999999999887553
No 236
>KOG1707|consensus
Probab=99.72 E-value=2.2e-17 Score=136.24 Aligned_cols=177 Identities=24% Similarity=0.287 Sum_probs=132.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+++|+.|+||||||-.+....|+++..+....-.-+ ..+.-..+...+.|++..+.........++.||++.+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 56999999999999999999999999877655543311111 2223344668899998665544445667899999999
Q ss_pred EEECCChhhHHHHHH-HHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHhC-C-eEEEEecCCCCCHHH
Q psy2300 100 MYDVTNEESFTSIQD-WITQIKTYS--WDNAQVILVGNKCDMEDERVISFER-GKHLAESLG-V-EFFETSAKDNVNVKG 173 (221)
Q Consensus 100 v~d~~~~~s~~~~~~-~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~gi~~ 173 (221)
||+.+++++++.+.. |+..+.+.. ..+.|+|+|+||.|.......+.+. ....+..+. + ..++|||++-.++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 999999999999987 999987654 3579999999999986554443333 334443332 2 478999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCC
Q psy2300 174 VFERLVDIICDKMSESLDSDPNLVA 198 (221)
Q Consensus 174 l~~~i~~~~~~~~~~~~~~~~~~~~ 198 (221)
+|-...+.+......-++.+++...
T Consensus 166 ~fYyaqKaVihPt~PLyda~~qelk 190 (625)
T KOG1707|consen 166 LFYYAQKAVIHPTSPLYDAEEQELK 190 (625)
T ss_pred hhhhhhheeeccCcccccccccccc
Confidence 9999888888777666666655533
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.72 E-value=9.5e-17 Score=132.84 Aligned_cols=150 Identities=23% Similarity=0.212 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--CC-----------------------------ccccceeeeeEEEEEEeCCeEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSF--TS-----------------------------AFVSTVGIDFKVKTVFRHDKRV 70 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 70 (221)
++|+++|+.++|||||+.+|+...- .. ..+...+++.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 4899999999999999999974321 00 0001123344444444445556
Q ss_pred EEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCH----
Q psy2300 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISF---- 146 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~---- 146 (221)
++.|+||||++.|.......+..+|++++|+|+..+..-+.. .....+... ...+++|++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHc--CCCcEEEEEEecccccchHHHHHHHH
Confidence 899999999998876666778999999999999864322211 112222222 1346899999999864322111
Q ss_pred HHHHHHHHHhC---CeEEEEecCCCCCHHHH
Q psy2300 147 ERGKHLAESLG---VEFFETSAKDNVNVKGV 174 (221)
Q Consensus 147 ~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l 174 (221)
++...+....+ ++++++||.+|+|+++.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 12223333333 46999999999999863
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=1e-16 Score=134.72 Aligned_cols=155 Identities=22% Similarity=0.209 Sum_probs=98.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCC--CCc-----------cc------------------cceeeeeEEEEEEeC
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSF--TSA-----------FV------------------STVGIDFKVKTVFRH 66 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~~-----------~~------------------~~~~~~~~~~~~~~~ 66 (221)
....++|+++|+.++|||||+.+|+...- ... .. ...+++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 34679999999999999999999975421 000 00 012333444444444
Q ss_pred CeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCH
Q psy2300 67 DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISF 146 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 146 (221)
....++.|+||||++.|.......+..+|++++|+|+.+...-..... ...+... ...+++|++||+|+.+......
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~l--g~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLL--GIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHh--CCCceEEEEEeeccccchhHHH
Confidence 455689999999998887666666799999999999986422111111 1122222 1357899999999864322112
Q ss_pred HHH----HHHHHHh----CCeEEEEecCCCCCHHHHH
Q psy2300 147 ERG----KHLAESL----GVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 147 ~~~----~~~~~~~----~~~~~~~Sa~~~~gi~~l~ 175 (221)
++. ..+.... ..+++++||++|.|++++-
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 222 2222332 3679999999999998753
No 239
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=3.6e-16 Score=129.04 Aligned_cols=147 Identities=17% Similarity=0.153 Sum_probs=98.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT--------------SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
...++|+++|+.++|||||+++|+..... .......+++.......+.....++.|+||||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 46799999999999999999999863110 0111234555555555555555678999999998877
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHh----
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVI-LVGNKCDMEDERVIS---FERGKHLAESL---- 156 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~---- 156 (221)
......+..+|++++|+|+.++.. .....++..+... +.|.+ +++||+|+.+..... ..+...+....
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 666677889999999999987432 2223334444443 68875 689999996422211 12333343333
Q ss_pred -CCeEEEEecCCCC
Q psy2300 157 -GVEFFETSAKDNV 169 (221)
Q Consensus 157 -~~~~~~~Sa~~~~ 169 (221)
+++++++|+++|.
T Consensus 166 ~~~~iv~iSa~~g~ 179 (396)
T PRK00049 166 DDTPIIRGSALKAL 179 (396)
T ss_pred cCCcEEEeeccccc
Confidence 3689999999975
No 240
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.71 E-value=4.2e-16 Score=121.95 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--C--Ccc----------------ccceeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSF--T--SAF----------------VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~--~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
-+|+++|++|+|||||+++|+...- . ... ....+.+.......+.+.++.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4699999999999999999975310 0 000 0012334444445556667899999999998
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
.|.......++.+|++++|+|+++.... ....++..... .+.|+++++||+|+.+.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 8877667778999999999999875332 22233333333 37999999999998654
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=1.5e-16 Score=132.73 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=104.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------ccccceeeeeEEEEEEeCCeE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSF--TS---------------------------AFVSTVGIDFKVKTVFRHDKR 69 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 69 (221)
.+.++|+++|+.++|||||+.+|+...- .. ..+...+++.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4568999999999999999999874210 00 011123455555555566667
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHH-------HHHHHHHHHHhhCCCCC-cEEEEEeCCCCCCC
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFT-------SIQDWITQIKTYSWDNA-QVILVGNKCDMEDE 141 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~ivv~nK~Dl~~~ 141 (221)
..++++|+||++.|.......+..+|++|+|+|+.+. .|+ .....+...... +. +++|++||+|+...
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCch
Confidence 8899999999999998888889999999999999873 222 233333333332 66 57889999998521
Q ss_pred c--c----cCHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy2300 142 R--V----ISFERGKHLAESLG-----VEFFETSAKDNVNVKG 173 (221)
Q Consensus 142 ~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 173 (221)
. . ...+++..++...+ ++++++|+++|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 1 11344566666555 5799999999999854
No 242
>KOG1490|consensus
Probab=99.71 E-value=5.9e-17 Score=131.59 Aligned_cols=199 Identities=20% Similarity=0.142 Sum_probs=145.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc----cccccch-----
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE----RYRTITT----- 88 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~----- 88 (221)
.++.-.++|+|.||+|||||++.++.........+ .++......+++....+++++||||.- +...+.+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYa--FTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYA--FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcc--cccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 34677899999999999999999999885444444 444444445556677889999999931 1111111
Q ss_pred hhccCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHH---HHHHHhCCeEEEE
Q psy2300 89 AYYRGAMGFILMYDVTN--EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGK---HLAESLGVEFFET 163 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~ 163 (221)
....--.+|+|+.|++. +.|.+.-..++..++-.. .+.|.|+|+||+|+...+.++.+... .....-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 11122346889999886 456666556777765433 58999999999999776666654432 2223334789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhhccccCCCCCCC-CCCCCCccccCCCCCCCCCCCC
Q psy2300 164 SAKDNVNVKGVFERLVDIICDKMSESLDSDPNLV-AGPKGTRLTEQPQRNNPINPNC 219 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~c 219 (221)
|+.+.+|+.++....++.++..+.+...+.++.. .-..+.++..|+.+..+.++.|
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~rd~~~r~p~ 378 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPAARDEVARPPC 378 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcccccccCCC
Confidence 9999999999999999998888766666665555 6788999999999999999988
No 243
>KOG1145|consensus
Probab=99.71 E-value=2.7e-16 Score=128.98 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=111.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
+..-|.++|+...|||||+..|-.........-.++....-.++.++ .+-.++|.|||||..|..++..-..-+|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 56678999999999999999998876543322222222223333334 33679999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC---------CeEEEEecCCCCC
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG---------VEFFETSAKDNVN 170 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~g 170 (221)
|+.++|.- +.+....+......+.|+||.+||+|.+++. .+........+| .+++++||++|+|
T Consensus 231 VVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 231 VVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999853 2233344444445699999999999987654 344333333333 4689999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 171 VKGVFERLVDI 181 (221)
Q Consensus 171 i~~l~~~i~~~ 181 (221)
++.|-+++.-.
T Consensus 304 l~~L~eaill~ 314 (683)
T KOG1145|consen 304 LDLLEEAILLL 314 (683)
T ss_pred hHHHHHHHHHH
Confidence 99988886543
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=2.5e-16 Score=133.57 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=82.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CC--C----------------ccccceeeeeEEEEEEeCCeEEEEEEEeCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS--FT--S----------------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 78 (221)
....+|+++|++++|||||+++|+... .. . ......++++......+...++.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 356799999999999999999997411 00 0 001112444444444555566889999999
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 79 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
|+..|......++..+|++|+|+|+.+.... ....++..... .+.|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 9998887677788999999999999875322 23333333333 3899999999999743
No 245
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=7.4e-16 Score=128.47 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=103.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcC------CCC--------CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADD------SFT--------SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (221)
.....++|+++|+.++|||||+++|.+. ... ...+...+++.......+...+.++.|+||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3346899999999999999999999732 100 01122245666666666665667899999999988
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcccCH---HHHHHHHHHh--
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVISF---ERGKHLAESL-- 156 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~-- 156 (221)
|.......+..+|++++|+|+.+... ......+..+... +.| +++++||+|+.+...... .+...+....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 76666666778999999999986532 2223333444443 688 578899999964322111 1222333322
Q ss_pred ---CCeEEEEecC---CCCC-------HHHHHHHHHHH
Q psy2300 157 ---GVEFFETSAK---DNVN-------VKGVFERLVDI 181 (221)
Q Consensus 157 ---~~~~~~~Sa~---~~~g-------i~~l~~~i~~~ 181 (221)
.++++++|+. +|.| +.+++++|.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 3578888775 4555 55666655544
No 246
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.70 E-value=7.4e-16 Score=119.39 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=106.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc-------cccccchhhcc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE-------RYRTITTAYYR 92 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~ 92 (221)
.-.+|+++|.|++|||||+++|++........+ .+|.....-.+..++.++++.|+||.- .........++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~--FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYP--FTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccC--ceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 457899999999999999999999884444333 444555554555566889999999831 11233455689
Q ss_pred CCcEEEEEEECCChhh-HHHHHHHHHHH-----------------------------------------Hhh--------
Q psy2300 93 GAMGFILMYDVTNEES-FTSIQDWITQI-----------------------------------------KTY-------- 122 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s-~~~~~~~~~~l-----------------------------------------~~~-------- 122 (221)
.||++++|+|+..+.. .+-+...+... .++
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999985443 33222222211 000
Q ss_pred ----------------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 123 ----------------SWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 123 ----------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
...-.|.++|.||.|+.. .++...+.+.. .++++||..+.|++++.+.|.+.+-
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 001358899999999855 23444444433 7899999999999999999999774
No 247
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=1.1e-15 Score=120.08 Aligned_cols=142 Identities=15% Similarity=0.244 Sum_probs=91.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc-----
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSA----------FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR----- 84 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----- 84 (221)
..++|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+++.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999998876443 23333444444555556667899999999932111
Q ss_pred ---------------------ccchhhcc--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 85 ---------------------TITTAYYR--GAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 85 ---------------------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
..+...+. .+|+++|+++.+... +... ...+..+. ...|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 11112222 478888888876422 1111 23334443 2689999999999854
Q ss_pred Ccc--cCHHHHHHHHHHhCCeEEEEecC
Q psy2300 141 ERV--ISFERGKHLAESLGVEFFETSAK 166 (221)
Q Consensus 141 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~ 166 (221)
..+ .......+.+..+++++|.....
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 322 22344566677788888876653
No 248
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=6e-16 Score=129.15 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=101.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeeeeEEEEEEeCCeE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS--FTS---------------------------AFVSTVGIDFKVKTVFRHDKR 69 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 69 (221)
...++|+++|+.++|||||+.+|+... ... ......+++.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 457899999999999999999987521 000 011123455555555556667
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCC--
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE---SF---TSIQDWITQIKTYSWDNAQ-VILVGNKCDMED-- 140 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~-- 140 (221)
..+.|+|+||+..|.......+..+|++++|+|+.+.. .+ ......+..+... +.| ++|++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccch
Confidence 88999999999999888888889999999999998642 11 1223333333333 666 679999999532
Q ss_pred CcccCH----HHHHHHHHHh-----CCeEEEEecCCCCCHHH
Q psy2300 141 ERVISF----ERGKHLAESL-----GVEFFETSAKDNVNVKG 173 (221)
Q Consensus 141 ~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 173 (221)
..+..+ +++..+.... +++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 111112 2233333333 36799999999999864
No 249
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=4.4e-16 Score=135.65 Aligned_cols=155 Identities=22% Similarity=0.205 Sum_probs=98.5
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc-------------cc------------------cceeeeeEEEEEE
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-------------FV------------------STVGIDFKVKTVF 64 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------------~~------------------~~~~~~~~~~~~~ 64 (221)
.+....++|+++|++++|||||+++|+...-.-. .. ...+++.......
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 3445678999999999999999999986431000 00 0113333333334
Q ss_pred eCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 65 RHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 65 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
+.....++.|+||||++.+.......+..+|++++|+|+.+...-+ .......+... ...+++|++||+|+.+....
T Consensus 99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL--GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh--CCCeEEEEEEecccccchhH
Confidence 4445567889999999887666666788999999999997643211 11122222222 13678999999998642211
Q ss_pred CHH----HHHHHHHHhC---CeEEEEecCCCCCHHH
Q psy2300 145 SFE----RGKHLAESLG---VEFFETSAKDNVNVKG 173 (221)
Q Consensus 145 ~~~----~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 173 (221)
..+ +...+....+ .+++++||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 112 2223334444 4699999999999985
No 250
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=1.4e-16 Score=125.16 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC----ccc--c----------ceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTS----AFV--S----------TVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI 86 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~----~~~--~----------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (221)
+|+++|++|+|||||+++++...... ... . ..+.+.......+...++.+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999997532110 000 0 0122222222233334578999999999877777
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEE--e
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFET--S 164 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--S 164 (221)
+..++..+|++++|+|+++.........| ..+.. .+.|+++++||+|+..... .+....+....+.+++.+ .
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~~--~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERADF--DKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCCH--HHHHHHHHHHhCCCeEEEEec
Confidence 77889999999999999886544333333 23333 3789999999999865421 122333333445444333 3
Q ss_pred cCCCCCHHH
Q psy2300 165 AKDNVNVKG 173 (221)
Q Consensus 165 a~~~~gi~~ 173 (221)
..+|.++..
T Consensus 155 ~~~~~~~~~ 163 (268)
T cd04170 155 IGEGDDFKG 163 (268)
T ss_pred ccCCCceeE
Confidence 444444433
No 251
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=4e-16 Score=122.17 Aligned_cols=115 Identities=19% Similarity=0.123 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--C--C------------ccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF--T--S------------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI 86 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (221)
+|+++|++|+|||||+++|+...- . . ......+++.......+...+.++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999974210 0 0 01112244444444444445678999999999888777
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
+...++.+|++++|+|+.+...-.. ..++..+.. .+.|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 8888999999999999987532222 233333433 37899999999998653
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=6e-16 Score=136.15 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=84.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC----Cc---------c---ccceeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT----SA---------F---VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~----~~---------~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (221)
+...+|+|+|+.++|||||+++|+...-. .. + ....+.+.......+.+....+.+|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 45689999999999999999999853200 00 0 00122233322233334567899999999998
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
+...+..+++.+|++++|+|+++.........| ..+.. .+.|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 888888899999999999999987665554444 33333 3799999999999854
No 253
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.68 E-value=7.5e-16 Score=128.33 Aligned_cols=162 Identities=12% Similarity=0.126 Sum_probs=103.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc-cccceeee----eEEEE------------E-EeCC-------------
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGID----FKVKT------------V-FRHD------------- 67 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~----~~~~~------------~-~~~~------------- 67 (221)
...++|+++|+...|||||+.+|++...... .+...|++ +.... + ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4578999999999999999999997532110 11111111 11000 0 0000
Q ss_pred ---eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 68 ---KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 68 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
-...+.|+|+||++.|.......+..+|++++|+|+.++.........+..+... .-.+++|++||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHHHH
Confidence 0236899999999998887777788999999999998742112222333333332 13568999999999643221
Q ss_pred --CHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 145 --SFERGKHLAES---LGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 145 --~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
..++...+... .+.+++++||++|.|++.|++.|.+.+
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 11223333322 256899999999999999999887643
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=1.8e-15 Score=120.68 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=53.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccc------cceeeeeEEEE---------------EEeCC-eEEEEEEEeCCCc-
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSAFV------STVGIDFKVKT---------------VFRHD-KRVKLQIWDTAGQ- 80 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~- 80 (221)
|+++|.||+|||||+++|++........ |..+..+.... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999987532222 22232222110 00122 3468999999996
Q ss_pred ---ccccccchh---hccCCcEEEEEEECC
Q psy2300 81 ---ERYRTITTA---YYRGAMGFILMYDVT 104 (221)
Q Consensus 81 ---~~~~~~~~~---~~~~~d~vi~v~d~~ 104 (221)
+....+... .++.+|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334334334 489999999999986
No 255
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=3e-15 Score=127.00 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=82.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC-CCCC-------------------ccccceeeeeEEEEEEeCCeEEEEEEEeCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD-SFTS-------------------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 78 (221)
....+|+|+|++++|||||+++|+.. .... ......++++......++..++.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45789999999999999999998632 1100 011122455555555666677899999999
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 79 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
|+..|.......+..+|++|+|+|+.+.-. .....++..... .+.|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 998887766667899999999999987421 222334333333 379999999999973
No 256
>KOG1191|consensus
Probab=99.66 E-value=3.5e-16 Score=127.05 Aligned_cols=172 Identities=18% Similarity=0.174 Sum_probs=117.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc-ccc--------cchhhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER-YRT--------ITTAYY 91 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~--------~~~~~~ 91 (221)
-++|+++|.||+|||||+|.|..... .-..|..|+|.+.....++..++.+.+.||+|-.+ -.. .....+
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 48999999999999999999999874 44667789999999888888889999999999433 111 122346
Q ss_pred cCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhC------CCCCcEEEEEeCCCCCCC-cccCHHHHHHHHHHh---CCe
Q psy2300 92 RGAMGFILMYDVT--NEESFTSIQDWITQIKTYS------WDNAQVILVGNKCDMEDE-RVISFERGKHLAESL---GVE 159 (221)
Q Consensus 92 ~~~d~vi~v~d~~--~~~s~~~~~~~~~~l~~~~------~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~---~~~ 159 (221)
..+|++++|+|+. +-++-..+...+....... ....|++++.||.|+... .+.... ...+.... ..+
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSVFP 425 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCcccc
Confidence 7899999999994 3333333333333332211 235789999999998543 111110 01111111 133
Q ss_pred -EEEEecCCCCCHHHHHHHHHHHHHHhhccccCCCC
Q psy2300 160 -FFETSAKDNVNVKGVFERLVDIICDKMSESLDSDP 194 (221)
Q Consensus 160 -~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~~~~ 194 (221)
..++|+++++|++.|.+.+.+.+...........+
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~ 461 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPP 461 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCch
Confidence 45699999999999999999988777654444433
No 257
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.66 E-value=1.6e-15 Score=115.38 Aligned_cols=161 Identities=22% Similarity=0.338 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEe-CCeEEEEEEEeCCCccccc-----ccchhhccCCcE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-HDKRVKLQIWDTAGQERYR-----TITTAYYRGAMG 96 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~d~ 96 (221)
||+++|+.++||||+.+.+..+..+.+ ....+.|..+....+ ....+.+.+||+||+..+. ......++.+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998887764333 233444444444433 2344689999999986443 345677899999
Q ss_pred EEEEEECCChh---hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc--ccC----HHHHHHHHHHhC---CeEEEEe
Q psy2300 97 FILMYDVTNEE---SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER--VIS----FERGKHLAESLG---VEFFETS 164 (221)
Q Consensus 97 vi~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~--~~~----~~~~~~~~~~~~---~~~~~~S 164 (221)
+|||+|+.+.+ .+..+...+..+.+.. ++..+.|++.|+|+.... ... .+...+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999998433 4444455555555554 789999999999984321 111 112233333445 7899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhh
Q psy2300 165 AKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.++ +.+-+.+..+++.+..+.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTH
T ss_pred CcC-cHHHHHHHHHHHHHcccH
Confidence 998 567777776666665443
No 258
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=2.9e-15 Score=121.28 Aligned_cols=158 Identities=19% Similarity=0.282 Sum_probs=116.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC--C-----C------ccccceeeeeEEEEEE-----eCCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSF--T-----S------AFVSTVGIDFKVKTVF-----RHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~--~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~i~D~~g~ 80 (221)
++.-+..++-+-..|||||..|++...- . . ......|+|.....+. .+++.+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 4556788999999999999999875321 0 0 1122234444433322 2456799999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-- 158 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 158 (221)
-.|.......+..|.+.++|+|++..-.-+.+.+.+..+.. +.-++-|+||+||+.+..... ..+.-.-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adperv--k~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERV--KQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHH--HHHHHHHhCCCc
Confidence 98888777788999999999999988777777777777765 789999999999987643222 2233334454
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 159 -EFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 159 -~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
..+.+||++|.||++++++|++.+
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhC
Confidence 478999999999999999887765
No 259
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=2.6e-15 Score=103.22 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=67.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc---------cccchhhcc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY---------RTITTAYYR 92 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 92 (221)
+|+|+|.+|+|||||+|+|++... .....+..+.......+..++. .+.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998642 1122222222222233344444 4579999994321 111223348
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeC
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 135 (221)
.+|++++|+|++++.. .....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887422 23334444443 48999999998
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.63 E-value=7.8e-15 Score=128.96 Aligned_cols=120 Identities=18% Similarity=0.095 Sum_probs=83.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCC----CCcc------------ccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSF----TSAF------------VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
+.+...+|+++|++++|||||+++|+...- .... ....+++.......+...+.++.++||||+
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 345678999999999999999999974210 0000 012244444444444445578999999998
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
..+...+...+..+|++++|+|+.+...-... ..+..+.. .+.|+++++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 87777777889999999999999876433322 23333333 3789999999999853
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.63 E-value=1.8e-14 Score=108.17 Aligned_cols=161 Identities=13% Similarity=0.170 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeE--EEEEEeCCeEEEEEEEeCCCccccc--------cc---ch
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK--VKTVFRHDKRVKLQIWDTAGQERYR--------TI---TT 88 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~--------~~---~~ 88 (221)
++|+++|.+|+|||||+|.+++...........+.+.. ...... .+..+.++||||-.... .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW--DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE--CCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999988643322212222222 222223 33579999999943221 11 11
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCC--CCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHhCCeE
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW--DNAQVILVGNKCDMEDERVIS------FERGKHLAESLGVEF 160 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~ 160 (221)
....+.|++++|+++.+ .+-.+ ...+..+..... .-.++++++|+.|......+. ....+.+.+..+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999886 22222 223333333221 125788999999964322111 133444555555555
Q ss_pred EEEe-----cCCCCCHHHHHHHHHHHHHHhh
Q psy2300 161 FETS-----AKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 161 ~~~S-----a~~~~gi~~l~~~i~~~~~~~~ 186 (221)
+..+ +..+.++.+|++.|-+.+.+.-
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 5554 4456778888888877776643
No 262
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=7.6e-15 Score=117.35 Aligned_cols=154 Identities=20% Similarity=0.212 Sum_probs=104.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeeeeEEEEEEeCCeE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS--FTS---------------------------AFVSTVGIDFKVKTVFRHDKR 69 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 69 (221)
...++++|+|+..+|||||+-+|+.+. ++. ......|.+.......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 357999999999999999999987532 100 111123556666666666667
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh---hHH---HHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE---SFT---SIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.++|+|+||+..|...+..-+.+||+.|+|+|+.+.+ +|. ..+.......- ..-..+||++||+|+.+-.+
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccccccCH
Confidence 88999999999999888888899999999999998763 111 11121111111 12466899999999976433
Q ss_pred cCHHHHH----HHHHHhC-----CeEEEEecCCCCCHHHH
Q psy2300 144 ISFERGK----HLAESLG-----VEFFETSAKDNVNVKGV 174 (221)
Q Consensus 144 ~~~~~~~----~~~~~~~-----~~~~~~Sa~~~~gi~~l 174 (221)
..+++.. .+.+..+ ++++++|+..|.|+.+.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 3333322 2333333 56999999999998653
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.60 E-value=3.1e-15 Score=109.16 Aligned_cols=117 Identities=20% Similarity=0.335 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEe-CCeEEEEEEEeCCCcccccccchh---hccCCcEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-HDKRVKLQIWDTAGQERYRTITTA---YYRGAMGF 97 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~v 97 (221)
-.|+++|+.|+|||+|..+|..+.....+.+. . ......+ ....-.+.++|+|||.+.+..... +...+.+|
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e---~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E---NNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-S---EEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c---CCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999998643322221 1 1111212 123346899999999987753333 47889999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHhh---CCCCCcEEEEEeCCCCCCCc
Q psy2300 98 ILMYDVTN-EESFTSIQDWITQIKTY---SWDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 98 i~v~d~~~-~~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~Dl~~~~ 142 (221)
|||+|.+. ...+.+..+++..+... .....|++|+.||+|+..+.
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99999974 44566666655544222 24689999999999996653
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.60 E-value=1.2e-14 Score=127.74 Aligned_cols=121 Identities=17% Similarity=0.081 Sum_probs=85.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC----Cccc------------cceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFT----SAFV------------STVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
+.+...+|+|+|++++|||||+++|+...-. .... ...+++.......+...+.++.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 3445679999999999999999999742100 0000 12344444444444445678999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
..+...+...+..+|++++|+|+.+........ ++..+.. .+.|+++++||+|+...
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCC
Confidence 887777788899999999999998865444332 3333333 37899999999999754
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=6.3e-15 Score=112.08 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=107.9
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc--c-cceeeeeEEEEEEeCCeEEEEEEEeCCCcc-------c
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF--V-STVGIDFKVKTVFRHDKRVKLQIWDTAGQE-------R 82 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~ 82 (221)
+.+......++|+++|..|+|||||||+|+.+...+.. . .+...++..... ++ -.+.+||+||-+ +
T Consensus 31 ~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~--~~--~~l~lwDtPG~gdg~~~D~~ 106 (296)
T COG3596 31 MLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY--DG--ENLVLWDTPGLGDGKDKDAE 106 (296)
T ss_pred hhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc--cc--cceEEecCCCcccchhhhHH
Confidence 33445556899999999999999999999965532211 1 111112222222 22 358899999943 3
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHH-
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE-------RVISFERGKHLAE- 154 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~- 154 (221)
++.....++...|++++++++.|+.--.+..-|...+... -+.+.++++|.+|.... .......++.+..
T Consensus 107 ~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 107 HRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 6667778899999999999999876444444444444333 25899999999997322 0011111111111
Q ss_pred -------Hh--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 155 -------SL--GVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 155 -------~~--~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
.. --+++..+...+.|++.+..++++.+..
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 11 1378888999999999999999988753
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.60 E-value=3.4e-14 Score=124.90 Aligned_cols=118 Identities=19% Similarity=0.133 Sum_probs=81.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC--CC--Ccc------------ccceeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDS--FT--SAF------------VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~--~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
.+...+|+|+|++++|||||+++|+... .. ... ....+++.......+...+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 4467899999999999999999997411 00 000 0123444444444444455789999999988
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
.+.......+..+|++++|+|+...-..+... .+..+... +.|.++++||+|+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~---~~p~iv~vNK~D~~ 140 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY---KVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc---CCCEEEEEECCCCC
Confidence 77655666788999999999988754333332 33333333 78999999999985
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=7.8e-14 Score=114.54 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEE---------------------eC-CeEEEEEEEeCCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVF---------------------RH-DKRVKLQIWDTAG 79 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~g 79 (221)
++|+++|.||+|||||+++|++..+.....+..+.+...-... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998875432222222111111111 11 1236799999999
Q ss_pred c----ccccccchhh---ccCCcEEEEEEECC
Q psy2300 80 Q----ERYRTITTAY---YRGAMGFILMYDVT 104 (221)
Q Consensus 80 ~----~~~~~~~~~~---~~~~d~vi~v~d~~ 104 (221)
. +....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2223333344 88999999999986
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.58 E-value=1.8e-13 Score=115.73 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=72.3
Q ss_pred EEEEEEeCCCccc-----ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 70 VKLQIWDTAGQER-----YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 70 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
.++.|.||||... ........+..+|+|+||+|+.+..+..+. .....+.... .+.|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 3478899999543 122344578999999999999875433332 2344444331 23599999999998543222
Q ss_pred CHHHHHHHHHH----hC---CeEEEEecCCCCCHHHHHHHHHH
Q psy2300 145 SFERGKHLAES----LG---VEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 145 ~~~~~~~~~~~----~~---~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
..+....+... .+ ..+|++||+.|.|++.+++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 23444444321 12 26999999999999999998876
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.54 E-value=1.1e-13 Score=121.72 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=74.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCC----Ccc------------ccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhh
Q psy2300 27 IGNSSVGKTSFLFRYADDSFT----SAF------------VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAY 90 (221)
Q Consensus 27 vG~~~~GKSsli~~l~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 90 (221)
+|++++|||||+++|+...-. ... ....+++.......+...++.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999543210 000 0012333333333333455789999999998877777788
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
+..+|++++|+|+++.........| ..+.. .+.|+++|+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999886655443333 33333 378999999999975
No 270
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.51 E-value=2.3e-13 Score=110.12 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=110.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC--CC------------CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS--FT------------SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI 86 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (221)
.-+|+++-+...|||||+..|+.+. |. .......|++.-.+...+.++++++.|.|||||..|.-.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4579999999999999999998653 11 122334467777776667778899999999999999988
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHh-------CC
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS-FERGKHLAESL-------GV 158 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~-------~~ 158 (221)
.+..+.-.|++++++|+.+.. +...+- .+++....+.+-|||+||+|.+.++... .++..++.... ++
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrF---VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRF---VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhh---hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 888999999999999998743 112222 1222222478889999999998765422 23344444433 57
Q ss_pred eEEEEecCCC----------CCHHHHHHHHHHH
Q psy2300 159 EFFETSAKDN----------VNVKGVFERLVDI 181 (221)
Q Consensus 159 ~~~~~Sa~~~----------~gi~~l~~~i~~~ 181 (221)
+++..|+..| .++..||+.|++.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~h 193 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDH 193 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHh
Confidence 8999999988 3455555554443
No 271
>KOG0090|consensus
Probab=99.51 E-value=2e-13 Score=99.93 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=97.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhcc---CCcEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYR---GAMGF 97 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~v 97 (221)
.-.|+++|+.+||||+|..+|..+.+.+.+ ..++-......... ..++++|.|||++.+.-...++. .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 356999999999999999999888543221 12222233332222 34899999999987765555555 68899
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHhh---CCCCCcEEEEEeCCCCCCCcccC--HHHHHHHH------------------
Q psy2300 98 ILMYDVTN-EESFTSIQDWITQIKTY---SWDNAQVILVGNKCDMEDERVIS--FERGKHLA------------------ 153 (221)
Q Consensus 98 i~v~d~~~-~~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~------------------ 153 (221)
+||+|..- ..-..+...++..+.-. .....|+++..||.|+..+.... .+.++...
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999652 33344444544443222 24678899999999984332110 00000000
Q ss_pred ----------------H--HhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 154 ----------------E--SLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 154 ----------------~--~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
. ...+.+.++|++++ +++++-+||.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 01234788999988 899999998765
No 272
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.51 E-value=1.3e-13 Score=92.43 Aligned_cols=136 Identities=22% Similarity=0.255 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc----chhhccCCcEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI----TTAYYRGAMGFI 98 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~~~~~d~vi 98 (221)
|++++|..|||||||.+.+.+.. ..+..|..+++.. . -.+||||.---... .......+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~--~lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGND--TLYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcch--hhhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 78999999999999999999876 3334444433321 1 14688984221222 233457899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~ 177 (221)
+|-+++++.+. +..-+ .. .-..|.|=|++|.|+.+.. +.+..++|...-|. ++|++|+.++.|+++++++
T Consensus 70 ~v~~and~~s~--f~p~f---~~--~~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESR--FPPGF---LD--IGVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCcccc--CCccc---cc--ccccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999987532 11100 11 1256699999999997543 45677888888886 8999999999999999998
Q ss_pred HHH
Q psy2300 178 LVD 180 (221)
Q Consensus 178 i~~ 180 (221)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 764
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.51 E-value=7.8e-13 Score=118.87 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=90.9
Q ss_pred CHHHHHHHHhcCCCCCccccceeeeeEEEE--EEeCCe-----------E-----EEEEEEeCCCcccccccchhhccCC
Q psy2300 33 GKTSFLFRYADDSFTSAFVSTVGIDFKVKT--VFRHDK-----------R-----VKLQIWDTAGQERYRTITTAYYRGA 94 (221)
Q Consensus 33 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~-----~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (221)
+||||+.++.+........- |+|...-. +..+.. . -.+.||||||++.+..+....+..+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaG--GITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~a 550 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAG--GITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLA 550 (1049)
T ss_pred ccccHHHHHhCCCcccccCC--CceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccC
Confidence 39999999998775432222 22222221 111110 0 1279999999999988777778889
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC----------------HHHHH----H
Q psy2300 95 MGFILMYDVTN---EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS----------------FERGK----H 151 (221)
Q Consensus 95 d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------~~~~~----~ 151 (221)
|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+....... ..+.. .
T Consensus 551 DivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 551 DLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred CEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999987 44444332 2333 268999999999985321100 01110 0
Q ss_pred H---HHHh---------------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 152 L---AESL---------------GVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 152 ~---~~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
. ...+ .++++++||++|+|+++|+++|......
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 0 1111 2579999999999999999887655443
No 274
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.48 E-value=2.2e-13 Score=120.22 Aligned_cols=118 Identities=16% Similarity=0.086 Sum_probs=80.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC---------------CCCCc---cccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD---------------SFTSA---FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
+...+|+++|+.++|||||+++|+.. .+... ...|+........+..++.++.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 46789999999999999999999752 11110 1112222222222335667789999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
..+.......+..+|++++|+|+.+.-..+....|. .... .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH---cCCCEEEEEEChhccc
Confidence 988777778899999999999998743222222222 2222 3678899999999853
No 275
>PTZ00258 GTP-binding protein; Provisional
Probab=99.46 E-value=1.7e-12 Score=105.71 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=56.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe---------------EEEEEEEeCCCccc-
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK---------------RVKLQIWDTAGQER- 82 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 82 (221)
...++|+++|.||+|||||+|+|++........|..+.......+.+... ..++.++|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46789999999999999999999887744333333333333333333221 23589999999421
Q ss_pred ------ccccchhhccCCcEEEEEEECC
Q psy2300 83 ------YRTITTAYYRGAMGFILMYDVT 104 (221)
Q Consensus 83 ------~~~~~~~~~~~~d~vi~v~d~~ 104 (221)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1111223467899999999973
No 276
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.46 E-value=4.3e-12 Score=101.87 Aligned_cols=120 Identities=21% Similarity=0.279 Sum_probs=86.4
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhh-CCCCCcEEEEEeCC
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNE----------ESFTSIQDWITQIKTY-SWDNAQVILVGNKC 136 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~ 136 (221)
..+.+.+||++|+...+..|..++.++++++||+|+++. ..+.+....+..+... ...+.|++|++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457789999999999999999999999999999999863 3454544544444332 23589999999999
Q ss_pred CCCCC--------------c--ccCHHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 137 DMEDE--------------R--VISFERGKHLAES----------LGVEFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 137 Dl~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
|+-.. . .-+.+.+..+... ..+..+.++|.+..++..+|+.+.+.+.+...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l 315 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNL 315 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHh
Confidence 96210 0 1233343333322 12456789999999999999999998887653
No 277
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.45 E-value=6.5e-12 Score=101.62 Aligned_cols=119 Identities=19% Similarity=0.286 Sum_probs=84.8
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCC
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNE----------ESFTSIQDWITQIKTY-SWDNAQVILVGNKCD 137 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D 137 (221)
.+.+.+||.+|+...+..|..++.++++++||+|+++- ..+.+....+..+... ...+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35689999999999999999999999999999999862 3455555544444332 236899999999999
Q ss_pred CCCC--------------c-ccCHHHHHHHHHH-----h------CCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 138 MEDE--------------R-VISFERGKHLAES-----L------GVEFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 138 l~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
+... . ..+.+.+..+... . .+.++.++|.+-.++..+|+.+.+.+.+...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 7210 0 0123333333221 1 1456788999999999999999998887654
No 278
>KOG1707|consensus
Probab=99.45 E-value=3e-12 Score=106.23 Aligned_cols=168 Identities=16% Similarity=0.223 Sum_probs=122.7
Q ss_pred hhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhh
Q psy2300 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAY 90 (221)
Q Consensus 11 ~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 90 (221)
.+.+++.....+.+.|+|+.++|||.|++.++++.+......+....+.+......+..-.+.+.|.+-. ....+...-
T Consensus 415 d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke 493 (625)
T KOG1707|consen 415 DRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE 493 (625)
T ss_pred hhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc
Confidence 3445556667999999999999999999999999887766666666666666666666556777787644 233322222
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNV 169 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 169 (221)
..||++.++||.+++.+|+.+......-... ...|+++|++|+|+++..+...-.-.+++..+++ +.+.+|.+..-
T Consensus 494 -~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 494 -AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred -ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence 7799999999999999999887765554333 5899999999999976543222223788999997 45666666422
Q ss_pred CHHHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDIIC 183 (221)
Q Consensus 170 gi~~l~~~i~~~~~ 183 (221)
. .++|..|....+
T Consensus 571 s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 571 S-NELFIKLATMAQ 583 (625)
T ss_pred C-chHHHHHHHhhh
Confidence 2 788887777654
No 279
>KOG3905|consensus
Probab=99.45 E-value=2.6e-12 Score=99.85 Aligned_cols=161 Identities=18% Similarity=0.291 Sum_probs=115.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe--EEEEEEEeCCCcccccccchhhccCC----
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK--RVKLQIWDTAGQERYRTITTAYYRGA---- 94 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~---- 94 (221)
--.|+|+|+.++||||||.+|-+.. .+-+..+..|....+.-+.. ..++.+|-..|...+..+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 3569999999999999999998876 33455566666665544332 36788898888776666655554432
Q ss_pred cEEEEEEECCCh-hhHHHHHHHHHHHHhhC--------------------------------------------------
Q psy2300 95 MGFILMYDVTNE-ESFTSIQDWITQIKTYS-------------------------------------------------- 123 (221)
Q Consensus 95 d~vi~v~d~~~~-~s~~~~~~~~~~l~~~~-------------------------------------------------- 123 (221)
-++|++.|.++| .-++.+..|...+.++.
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 368889999988 56677777776653310
Q ss_pred -----------CCCCcEEEEEeCCCCC----CCccc---C----HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 124 -----------WDNAQVILVGNKCDME----DERVI---S----FERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 124 -----------~~~~p~ivv~nK~Dl~----~~~~~---~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
.-++|++||.+|+|.. ...+. . ...++.||..+|..++.+|++...|++-+..+|.+.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 1167999999999972 21111 1 224678888899999999999999999999999888
Q ss_pred HHH
Q psy2300 182 ICD 184 (221)
Q Consensus 182 ~~~ 184 (221)
+..
T Consensus 289 ~yG 291 (473)
T KOG3905|consen 289 SYG 291 (473)
T ss_pred hcC
Confidence 753
No 280
>KOG1144|consensus
Probab=99.44 E-value=5.2e-13 Score=113.20 Aligned_cols=165 Identities=20% Similarity=0.222 Sum_probs=109.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc----cceeeeeEEEEE--------EeCCe----EEEEEEEeCCCcccc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV----STVGIDFKVKTV--------FRHDK----RVKLQIWDTAGQERY 83 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~----~~~~~i~D~~g~~~~ 83 (221)
+..-|+|+|+..+|||-|+..+.+..+..... ..+|-+|.+..- .-+.. ---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45668999999999999999998765433211 222334433320 00000 013678999999999
Q ss_pred cccchhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC-------CCccc------CHH
Q psy2300 84 RTITTAYYRGAMGFILMYDVTNE---ESFTSIQDWITQIKTYSWDNAQVILVGNKCDME-------DERVI------SFE 147 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~-------~~~~~------~~~ 147 (221)
..++.....-||++|+|+|+.+. .+++.+ .....++.||||.+||+|.- +.... ...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-------~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-------NLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH-------HHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 99999999999999999999863 333333 22233589999999999951 11000 000
Q ss_pred HHHHHHHH----------hC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHhhccccC
Q psy2300 148 RGKHLAES----------LG---------------VEFFETSAKDNVNVKGVFERLVDIICDKMSESLD 191 (221)
Q Consensus 148 ~~~~~~~~----------~~---------------~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~ 191 (221)
-..+|-.+ .| +.++++||.+|+||.+|+-+|+++....|.+...
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~ 695 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA 695 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 01111111 01 3478999999999999999999999888765543
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.44 E-value=8.4e-13 Score=102.18 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=78.6
Q ss_pred ccccccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCe
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEE-SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVE 159 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 159 (221)
+++..+.+.++.++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+||.+......+....+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567778888999999999999999887 89999999987754 4899999999999965544433344444 457889
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q psy2300 160 FFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 160 ~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
++++||++|.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998764
No 282
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.44 E-value=2.6e-12 Score=96.35 Aligned_cols=102 Identities=17% Similarity=0.097 Sum_probs=63.4
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHH
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERG 149 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 149 (221)
....++++.|..-...... . -+|.++.|+|+.+.++... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 3456777777322222211 1 2678999999987655321 111111 223489999999964322233444
Q ss_pred HHHHHH--hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 150 KHLAES--LGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 150 ~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.+..+. .+.+++++|+++|+|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444444 346899999999999999999998754
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.44 E-value=2.8e-12 Score=99.20 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=72.4
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc--c-c---
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR--T-I--- 86 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~--- 86 (221)
.-.+.....++|+|+|.+|+|||||+|+|++...... ....+.+...........+..+.+|||||-.... . .
T Consensus 23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~ 101 (249)
T cd01853 23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRK 101 (249)
T ss_pred HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHH
Confidence 3344556789999999999999999999999764322 1111112222222222234678999999954331 0 0
Q ss_pred ----chhhcc--CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhCCC--CCcEEEEEeCCCCC
Q psy2300 87 ----TTAYYR--GAMGFILMYDVTNE-ESFTSIQDWITQIKTYSWD--NAQVILVGNKCDME 139 (221)
Q Consensus 87 ----~~~~~~--~~d~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~Dl~ 139 (221)
...++. ..|++++|..++.. ....+ ...+..+...... -.++++|.||+|..
T Consensus 102 ~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 102 ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 112332 57888888766542 22221 1233333332211 25699999999974
No 284
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.42 E-value=5.3e-12 Score=95.54 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=86.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------cc---ccce---eeeeEEEEEEe-----------------
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS--------AF---VSTV---GIDFKVKTVFR----------------- 65 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~--------~~---~~~~---~~~~~~~~~~~----------------- 65 (221)
+......|+|+|++|+|||||++++....... .. ..+. ........+..
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 34467889999999999999999987541100 00 0000 00001111100
Q ss_pred -CCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 66 -HDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 66 -~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
......+.++|+.|.-... ..+....+..+.|+|+.+.+... .. .... .+.|.++++||+|+.+....
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~---~~~~---~~~a~iiv~NK~Dl~~~~~~ 166 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LK---YPGM---FKEADLIVINKADLAEAVGF 166 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hh---hHhH---HhhCCEEEEEHHHccccchh
Confidence 0012345667777621000 01112345556777776543211 11 1111 15778999999999654322
Q ss_pred CHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 145 SFERGKHLAESLG--VEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 145 ~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
...+.....+..+ .+++++|+++|.|++++++++.+.
T Consensus 167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3334444444443 789999999999999999998764
No 285
>PRK13768 GTPase; Provisional
Probab=99.42 E-value=2.7e-12 Score=99.91 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=68.6
Q ss_pred EEEEEeCCCcccc---cccchhhcc---C--CcEEEEEEECCChhhHHHHH--HHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 71 KLQIWDTAGQERY---RTITTAYYR---G--AMGFILMYDVTNEESFTSIQ--DWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 71 ~~~i~D~~g~~~~---~~~~~~~~~---~--~d~vi~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
.+.+||+||+.+. ...+..+++ . ++++++|+|+.......+.. .|+...... ..+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5789999997542 333332322 2 89999999997543322222 222222211 13899999999999865
Q ss_pred CcccCHHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 141 ERVISFERGKH----------------------------LAESLG--VEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 141 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
..+. +.... ..+..+ .+++++|+++++|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 4322 11111 112233 4789999999999999999998765
No 286
>KOG0410|consensus
Probab=99.40 E-value=4.6e-13 Score=103.97 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=112.3
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc---------cc
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ---------ER 82 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~ 82 (221)
.+.+........|.|||..||||||||++|+.....+...-..+.+..........+. .+.+.||-|. +.
T Consensus 169 ~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaA 247 (410)
T KOG0410|consen 169 RRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAA 247 (410)
T ss_pred hhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHH
Confidence 3344555567789999999999999999999766555544444444555555555554 4778899883 22
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc----EEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ----VILVGNKCDMEDERVISFERGKHLAESLGV 158 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 158 (221)
|.... .....+|++++|.|+++|..-++....+.-+.....+..| ++=|-||.|........ +.++
T Consensus 248 F~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~--------E~n~- 317 (410)
T KOG0410|consen 248 FQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------EKNL- 317 (410)
T ss_pred HHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc--------ccCC-
Confidence 33322 2357899999999999998877777777777766433333 45566788875432211 1222
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 159 EFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 159 ~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.+.+||.+|.|+++++..+-..+..-+
T Consensus 318 -~v~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 318 -DVGISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred -ccccccccCccHHHHHHHHHHHhhhhh
Confidence 678899999999999999888776553
No 287
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.40 E-value=8.1e-12 Score=104.19 Aligned_cols=163 Identities=14% Similarity=0.260 Sum_probs=114.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe--EEEEEEEeCCCcccccccchhhccC----
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK--RVKLQIWDTAGQERYRTITTAYYRG---- 93 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~---- 93 (221)
..-.|+|+|..++||||||.+|.+.. ...++.+.+|....+.-+.. ..++.+|.+.|...+..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999987654 34466677777666543322 2578999998877777776665553
Q ss_pred CcEEEEEEECCChhhH-HHHHHHHHHHHhh-------------------------C------------------------
Q psy2300 94 AMGFILMYDVTNEESF-TSIQDWITQIKTY-------------------------S------------------------ 123 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~-~~~~~~~~~l~~~-------------------------~------------------------ 123 (221)
--+||+|+|.+.|-.+ +.+..|+..+..+ .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 2468999999987433 4454455544220 0
Q ss_pred -------------CCCCcEEEEEeCCCCC----CCcc-------cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 124 -------------WDNAQVILVGNKCDME----DERV-------ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 124 -------------~~~~p~ivv~nK~Dl~----~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
.-++|++||++|+|.. .... .-...++.+|..+|..++.+|++...+++.|+.+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 0047999999999962 1111 112336777888899999999999999999999988
Q ss_pred HHHHHh
Q psy2300 180 DIICDK 185 (221)
Q Consensus 180 ~~~~~~ 185 (221)
+.+...
T Consensus 261 h~l~~~ 266 (472)
T PF05783_consen 261 HRLYGF 266 (472)
T ss_pred HHhccC
Confidence 887654
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.40 E-value=3.8e-12 Score=112.69 Aligned_cols=117 Identities=18% Similarity=0.130 Sum_probs=77.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC--CCcc---------c---cceeeeeEE--EEE--EeCCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSF--TSAF---------V---STVGIDFKV--KTV--FRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~~~---------~---~~~~~~~~~--~~~--~~~~~~~~~~i~D~~g~ 80 (221)
+...+|+++|+.++|||||+.+|+...- .... . ...+++... ..+ ..+..++.+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4567899999999999999999975320 0000 0 001222221 122 22445678999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
..|.......+..+|++++|+|+...-.......|.. .... +.|.++++||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc---CCCeEEEEECchhh
Confidence 8887777788999999999999887533322222332 2222 56889999999975
No 289
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.39 E-value=8.9e-12 Score=98.09 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=70.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc-------chhh
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI-------TTAY 90 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~ 90 (221)
...++|+|+|.+|+||||++|+|++..... ......+.+........ .+..+.++||||....... ...+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 568999999999999999999999876421 11111122222222222 3468999999995432211 1111
Q ss_pred c--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCC--CCCcEEEEEeCCCCCCCcccC
Q psy2300 91 Y--RGAMGFILMYDVTNEESFTSIQDWITQIKTYSW--DNAQVILVGNKCDMEDERVIS 145 (221)
Q Consensus 91 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~ 145 (221)
+ ...|+++||..++.......-...+..+..... --.+.+|++|+.|.......+
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 1 268999999765432111111223333322211 125689999999975333333
No 290
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.39 E-value=6.7e-12 Score=98.62 Aligned_cols=149 Identities=24% Similarity=0.267 Sum_probs=105.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC------------C-------------------ccccceeeeeEEEEEEeCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT------------S-------------------AFVSTVGIDFKVKTVFRHD 67 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~~ 67 (221)
...++++.+|...=||||||-||+...-. . +-+...|++..+....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45789999999999999999998754210 0 1112245666666555555
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHH--HHHHHHhhCCCCCcEEEEEeCCCCCCCcccC
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQD--WITQIKTYSWDNAQVILVGNKCDMEDERVIS 145 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~--~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~ 145 (221)
....|.+-|||||+.|.+++..-...||+.|+++|+...- .+..+. ++..+.. -..++|.+||+||.+-.+..
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC----CcEEEEEEeeecccccCHHH
Confidence 6678999999999999998888889999999999986432 222222 3333332 46788899999997754433
Q ss_pred HH----HHHHHHHHhCC---eEEEEecCCCCCHH
Q psy2300 146 FE----RGKHLAESLGV---EFFETSAKDNVNVK 172 (221)
Q Consensus 146 ~~----~~~~~~~~~~~---~~~~~Sa~~~~gi~ 172 (221)
++ +...|+..+++ .++++||..|.|+-
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 33 34556666664 68999999999874
No 291
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.38 E-value=5.2e-12 Score=95.88 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccce--eeeeEEEEEEeCCeEEEEEEEeCCCcccc--------cccch---
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV--GIDFKVKTVFRHDKRVKLQIWDTAGQERY--------RTITT--- 88 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~--- 88 (221)
++|+|+|..|+||||++|.+++........... +..........++ ..+.++||||-... ..+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987654432222 2233333444444 56899999993111 11111
Q ss_pred hhccCCcEEEEEEECCChhhHHHH--HHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHhCCe
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSI--QDWITQIKTYSWDNAQVILVGNKCDMEDERVIS-------FERGKHLAESLGVE 159 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 159 (221)
....+.+++|||+.+.. -+-.+. -.++..+.... --..++||.+..|......+. ....+.+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 12467899999999883 222222 22222222111 123578888888754432211 12244555556667
Q ss_pred EEEEecC------CCCCHHHHHHHHHHHHHHhh
Q psy2300 160 FFETSAK------DNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 160 ~~~~Sa~------~~~gi~~l~~~i~~~~~~~~ 186 (221)
|+..+.+ ....+.+|++.|-+.+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 7776666 23457777777666666553
No 292
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.38 E-value=2.6e-11 Score=97.79 Aligned_cols=83 Identities=20% Similarity=0.188 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeE---------------EEEEEEeCCCcccc---
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR---------------VKLQIWDTAGQERY--- 83 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~--- 83 (221)
++|+++|.||+|||||+|+|++........|..+.....-.+.+.... .++.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999987433333333322332233332211 35899999994211
Q ss_pred -ccc---chhhccCCcEEEEEEECC
Q psy2300 84 -RTI---TTAYYRGAMGFILMYDVT 104 (221)
Q Consensus 84 -~~~---~~~~~~~~d~vi~v~d~~ 104 (221)
..+ ....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 222467899999999974
No 293
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.37 E-value=4.6e-11 Score=96.65 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=95.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc--------------ccee---eeeEEEE-------EEe-CCeEEEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV--------------STVG---IDFKVKT-------VFR-HDKRVKLQI 74 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~~~~---~~~~~~~-------~~~-~~~~~~~~i 74 (221)
..+.|+|+|+.++||||||++|.+..+.+... +..| +|..++. +.. ++-...+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 46899999999999999999999983322211 2223 3333222 222 344578999
Q ss_pred EeCCCcc--------cccc-----c----------------chhhcc-CCcEEEEEE-ECC--C--hhhHHHH-HHHHHH
Q psy2300 75 WDTAGQE--------RYRT-----I----------------TTAYYR-GAMGFILMY-DVT--N--EESFTSI-QDWITQ 118 (221)
Q Consensus 75 ~D~~g~~--------~~~~-----~----------------~~~~~~-~~d~vi~v~-d~~--~--~~s~~~~-~~~~~~ 118 (221)
+||+|-. +... . +...+. ++|+.|+|. |.+ + ++.+... ..++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999821 1111 0 223344 899999988 764 1 2233333 347777
Q ss_pred HHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 119 IKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 119 l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
++.. ++|+++++||.|-.... ..+....+...++.+++.+|+.. ..-+++..-+.+.+
T Consensus 176 Lk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~-l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES-MRESDILSVLEEVL 233 (492)
T ss_pred HHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH-cCHHHHHHHHHHHH
Confidence 7665 89999999999942211 33445566677788888887753 33344333333333
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.37 E-value=2.6e-11 Score=92.88 Aligned_cols=140 Identities=15% Similarity=0.146 Sum_probs=83.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
.....|+|+|.+|+|||||++.+....-........+. + .+.. ..+.++.++|+||.- .. ....+..+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~-~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVT-GKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEe-cCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 34578999999999999999999875321111111121 1 1111 234578899999853 22 223468899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcE-EEEEeCCCCCCCcccC---HHHHHH-HHHH--hCCeEEEEecCCCCC
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQV-ILVGNKCDMEDERVIS---FERGKH-LAES--LGVEFFETSAKDNVN 170 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~g 170 (221)
+|+|+........ ..++..+... +.|. ++|+||+|+.+....- .+.++. +... .+.+++.+||+++..
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999986443322 2333444333 5774 5599999985432110 111111 2211 235899999998844
No 295
>KOG1532|consensus
Probab=99.37 E-value=1.3e-11 Score=94.01 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=67.8
Q ss_pred EEEEEEeCCCccc-cc-----cc-chhh-ccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCC
Q psy2300 70 VKLQIWDTAGQER-YR-----TI-TTAY-YRGAMGFILMYDVTN---EESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138 (221)
Q Consensus 70 ~~~~i~D~~g~~~-~~-----~~-~~~~-~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 138 (221)
+.+.++||||+-+ |. .+ .+.+ ....-++++|+|... +..| +.+.+....-......|+|++.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCCeEEEEecccc
Confidence 4578999999642 21 11 1111 234567888888543 4333 334333332222358999999999998
Q ss_pred CCCc----cc-CHHHHHHHHHH---------------------hCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 139 EDER----VI-SFERGKHLAES---------------------LGVEFFETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 139 ~~~~----~~-~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
.+.. .. +++..++..+. .++..+.+|+.+|.|++++|..+-+.+-++
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 5531 11 11111111111 136689999999999999999988776433
No 296
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.36 E-value=3.5e-12 Score=114.28 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=81.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC--C------------ccccceeeeeE--EEEEEe--------------C
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFT--S------------AFVSTVGIDFK--VKTVFR--------------H 66 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~--~------------~~~~~~~~~~~--~~~~~~--------------~ 66 (221)
..+...+|+|+|+.++|||||+.+|+...-. . ......+++.. ...+.. .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3456789999999999999999999754310 0 00001122222 222222 1
Q ss_pred CeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 67 DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
...+.+.++||||+..|.......++.+|++|+|+|+.++-......-|... .. .+.|+++++||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~-~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH-HH---CCCCEEEEEECCccc
Confidence 2357889999999999888778888999999999999876443333334333 33 379999999999985
No 297
>KOG0458|consensus
Probab=99.36 E-value=1.5e-11 Score=102.27 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=106.0
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCC-----------------------------CCccccceeeeeEEEEEEeC
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSF-----------------------------TSAFVSTVGIDFKVKTVFRH 66 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 66 (221)
.+....+.++|+|+.++|||||+.+++...- ....+...|++..+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 3444689999999999999999999864210 01222334666677777777
Q ss_pred CeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh---hHH---HHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 67 DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE---SFT---SIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
.....+++.|+||+..|...+..-...+|+.++|+|++-.+ +|+ ..+.....+... .-..++|++||+|+.+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVS 329 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccC
Confidence 77788999999999999988888889999999999987421 121 122222222222 2567899999999865
Q ss_pred CcccCHHHH----HHHH-HHh-----CCeEEEEecCCCCCHHH
Q psy2300 141 ERVISFERG----KHLA-ESL-----GVEFFETSAKDNVNVKG 173 (221)
Q Consensus 141 ~~~~~~~~~----~~~~-~~~-----~~~~~~~Sa~~~~gi~~ 173 (221)
=.+-.++++ ..|. +.. ++.+++||+..|+|+-.
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 333333332 2333 222 25799999999999754
No 298
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=6.9e-12 Score=112.26 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=79.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCC--CCc------------cccceeeeeE--EEEEEeC--------CeEEEEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSF--TSA------------FVSTVGIDFK--VKTVFRH--------DKRVKLQ 73 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~~------------~~~~~~~~~~--~~~~~~~--------~~~~~~~ 73 (221)
.+...+|+++|+.++|||||+++|+...- ... .....+++.. ...+... +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 35667999999999999999999986321 000 0001122222 1222222 1256799
Q ss_pred EEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 74 i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
++||||+..+.......++.+|++|+|+|+.+.-..... ..+..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence 999999988877777888999999999999875433332 22333333 268999999999985
No 299
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.35 E-value=1.7e-11 Score=84.81 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccc-cceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV-STVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
+||+++|..|+|||+|+.++....+...+. ++.+ +..+ ...+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------~~~~-----------~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------IDVY-----------DPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------hhhc-----------cccccCCCCEEEEE
Confidence 589999999999999999998777644332 3322 1122 23356778999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
++.++..++..+ |...+........|.++++||.|+.+......++. ..++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999988765 76666554445688999999999844333332222 245567888988874
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.35 E-value=3.3e-11 Score=96.57 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=66.0
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--CH
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--SF 146 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~ 146 (221)
++.+.|+||+|...-. ......+|.+++|.+...++.+..+.. .+. ...-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-----E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIM-----ELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhh-----hhhheEEeehhcccchhHHHHHH
Confidence 4678899999965221 224677999999987544444433321 111 2234899999998653221 11
Q ss_pred HHHHHHHHH-------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 147 ERGKHLAES-------LGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 147 ~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
.+....... ...+++.+||+++.|++++++.|.+.+.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222222221 1247999999999999999999998765
No 301
>KOG0461|consensus
Probab=99.32 E-value=5.7e-11 Score=93.26 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=93.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC----CCCccccc-eeeeeE--EEEEE-------eCCeEEEEEEEeCCCcccccc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS----FTSAFVST-VGIDFK--VKTVF-------RHDKRVKLQIWDTAGQERYRT 85 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~----~~~~~~~~-~~~~~~--~~~~~-------~~~~~~~~~i~D~~g~~~~~~ 85 (221)
..+++.++|+..+|||||.+++..-. |+.+..++ .+++.+ -..+. -.++..++++.|+||+...-+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 45999999999999999999997542 22221111 122222 11111 134457889999999986655
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCC-CC-CcccCHHHH-HHHHHH---h--
Q psy2300 86 ITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDM-ED-ERVISFERG-KHLAES---L-- 156 (221)
Q Consensus 86 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl-~~-~~~~~~~~~-~~~~~~---~-- 156 (221)
.......-.|..++|+|+.....-+.++- .+..+. -...+||+||.|. ++ .+....++. .+..+. .
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 44444556788999999986543333322 222222 3456777888876 33 222111221 111111 1
Q ss_pred --CCeEEEEecCCC----CCHHHHHHHHHHHHH
Q psy2300 157 --GVEFFETSAKDN----VNVKGVFERLVDIIC 183 (221)
Q Consensus 157 --~~~~~~~Sa~~~----~gi~~l~~~i~~~~~ 183 (221)
+.|++++|+..| +++.++.+.|-+.+.
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 268999999999 666666665555543
No 302
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5e-12 Score=98.18 Aligned_cols=163 Identities=13% Similarity=0.183 Sum_probs=107.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC---ccccceee--ee-----------------EEEE-EEeC----CeEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTS---AFVSTVGI--DF-----------------KVKT-VFRH----DKRVK 71 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~~--~~-----------------~~~~-~~~~----~~~~~ 71 (221)
...++|.++|+...|||||.++|++--... +...-+++ .| .... .... .--.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 357999999999999999999998742211 10000000 00 0000 0000 01246
Q ss_pred EEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc--ccCHHHH
Q psy2300 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER--VISFERG 149 (221)
Q Consensus 72 ~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~ 149 (221)
+.|.|.|||+-....+..-..-.|+.++|++++.+-.-.+....+..+.-. .-..++++-||.|+...+ ..++++.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence 889999999977666655566689999999999743333344444445444 256789999999995532 2344555
Q ss_pred HHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 150 KHLAESL---GVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 150 ~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
++|.+.. +.+++++||..+.||+.++++|.+.+-
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 6665543 579999999999999999998877764
No 303
>KOG0705|consensus
Probab=99.29 E-value=8.3e-12 Score=102.92 Aligned_cols=174 Identities=25% Similarity=0.413 Sum_probs=130.5
Q ss_pred CCcCcchhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 2 AGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
|++++++|...+.-.+ +|+.|||..++|||+|+.+++.+.|.....+.-+ .+.+.+.+++....+.+.|.+|..
T Consensus 15 afvnsqewtlsrsipe----lk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~ 88 (749)
T KOG0705|consen 15 AFVNSQEWTLSRSIPE----LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP 88 (749)
T ss_pred hhccccceeeecccch----hheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc
Confidence 5788999998876544 9999999999999999999999988665444333 555666677777788889988732
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCC--CCcccCHHHHHHHH-HHhC
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDME--DERVISFERGKHLA-ESLG 157 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~-~~~~ 157 (221)
...|...+|++||||...+..+|+.+..+...+..+. ....|+++++++.-.. ..+.+...+.+.++ ....
T Consensus 89 -----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~kr 163 (749)
T KOG0705|consen 89 -----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKR 163 (749)
T ss_pred -----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCc
Confidence 3346788999999999999999999888777765444 3467788888765432 22333334444444 3445
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 158 VEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 158 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
+.+|++++.+|.++...|..+..++....
T Consensus 164 csy~et~atyGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 164 CSYYETCATYGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred cceeecchhhhhhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998876553
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=5.2e-11 Score=87.07 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=44.3
Q ss_pred EEEEeCCCcc----cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCC
Q psy2300 72 LQIWDTAGQE----RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136 (221)
Q Consensus 72 ~~i~D~~g~~----~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 136 (221)
+.|+|+||-. ....++..++..+|++|+|.++.....-.....+....... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 7899999953 23355777889999999999999865555555555555443 45599999984
No 305
>KOG0082|consensus
Probab=99.28 E-value=3e-10 Score=90.69 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=83.6
Q ss_pred CeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhC-CCCCcEEEEEeC
Q psy2300 67 DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE----------SFTSIQDWITQIKTYS-WDNAQVILVGNK 135 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~----------s~~~~~~~~~~l~~~~-~~~~p~ivv~nK 135 (221)
..+..+.++|.||+...+.-|...+.++++||||+++++-+ .+.+...++..+-... -.+.++++++||
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 34478999999999988888999999999999999987521 2222233444442222 357999999999
Q ss_pred CCCCCC--------------cc-cCHHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 136 CDMEDE--------------RV-ISFERGKHLAES----------LGVEFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 136 ~Dl~~~--------------~~-~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
.|+-.. .. -..+++..+... ..+.++.+.|++-.+|+.+|.++.+.+.+...
T Consensus 272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 997211 11 123333333321 12456788999999999999999998887654
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.28 E-value=6.1e-12 Score=96.77 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=57.0
Q ss_pred EEEEEeCCCcccccccchhhc--------cCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 71 KLQIWDTAGQERYRTITTAYY--------RGAMGFILMYDVTN---EESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
.+.++|||||-+.-..+.... ...-++++++|+.. +..| +..++..+.-...-+.|.|.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f--~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKF--VSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHH--HHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhH--HHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 478999999876654444332 34567889999763 3333 2333333221111289999999999996
Q ss_pred CCcc---c----C------------HHHHHHHHHHh---C-C-eEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 140 DERV---I----S------------FERGKHLAESL---G-V-EFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 140 ~~~~---~----~------------~~~~~~~~~~~---~-~-~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.... . . ......++... + . .++++|+++++|+.+++..+-+.+
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 5220 0 0 00011111111 2 3 799999999999999998876654
No 307
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.27 E-value=6.3e-11 Score=92.62 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=52.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe---------------EEEEEEEeCCCcccc----c
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK---------------RVKLQIWDTAGQERY----R 84 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~ 84 (221)
|+++|.||+|||||+|+|++........|..+.......+.+... ...+.++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999998754433343333333333333322 135899999993211 1
Q ss_pred cc---chhhccCCcEEEEEEECC
Q psy2300 85 TI---TTAYYRGAMGFILMYDVT 104 (221)
Q Consensus 85 ~~---~~~~~~~~d~vi~v~d~~ 104 (221)
.+ ....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 222467899999999863
No 308
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=8.4e-11 Score=95.15 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc-cccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
-|+..|+-..|||||++.+.+...... .....|++.+..-...+..+..+.|+|.||++.+-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 478899999999999999998763221 1223355555555555555568999999999998887877888999999999
Q ss_pred ECCCh---hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH---hCCeEEEEecCCCCCHHHHH
Q psy2300 102 DVTNE---ESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAES---LGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 102 d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~ 175 (221)
++++. ++.+++ ..+... .....++|+||+|..+...+. +..++.... .+.+++.+|+++|+||++|.
T Consensus 82 ~~deGl~~qtgEhL----~iLdll--gi~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 82 AADEGLMAQTGEHL----LILDLL--GIKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred eCccCcchhhHHHH----HHHHhc--CCCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHH
Confidence 99753 333333 333333 245569999999986643221 122222222 24678999999999999999
Q ss_pred HHHHHHHH
Q psy2300 176 ERLVDIIC 183 (221)
Q Consensus 176 ~~i~~~~~ 183 (221)
+.|.+...
T Consensus 155 ~~l~~L~~ 162 (447)
T COG3276 155 NELIDLLE 162 (447)
T ss_pred HHHHHhhh
Confidence 99999874
No 309
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.26 E-value=3.9e-11 Score=96.89 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=77.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccc--eeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc-----hhh
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF-VST--VGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT-----TAY 90 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~ 90 (221)
...++|+|+|.+|+|||||||+|.+-.-..+. .++ ..++.....+..... -++.+||+||........ ..-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 35699999999999999999999764321111 111 122233333332221 258899999954322222 223
Q ss_pred ccCCcEEEEEEECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCC-------CCcccCH----HHHHHHHHH---
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDME-------DERVISF----ERGKHLAES--- 155 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~----~~~~~~~~~--- 155 (221)
+...|.+|++.+. .|..... +...+.+. ++|+++|-+|+|.. ..+..+. ++.++.+..
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 5667888887763 2333322 33444544 89999999999951 1111222 222322222
Q ss_pred -hC---CeEEEEecCCCC--CHHHHHHHHHHHHHH
Q psy2300 156 -LG---VEFFETSAKDNV--NVKGVFERLVDIICD 184 (221)
Q Consensus 156 -~~---~~~~~~Sa~~~~--gi~~l~~~i~~~~~~ 184 (221)
.+ -++|-+|..+-. ++..|.+.|.+-+-.
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 23 368999998764 466777776665543
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.22 E-value=8.6e-11 Score=93.78 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=64.2
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHH
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFER 148 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 148 (221)
++.+.|+||+|.... ....+..+|.++++.... +..++..+...+ .+.|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 467889999985321 223566788888885433 223333333222 267789999999996543211100
Q ss_pred ------HHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 149 ------GKHLAES---LGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 149 ------~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
...+... ...+++++||+++.|+++++++|.+.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0111111 1236899999999999999999988643
No 311
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.22 E-value=5.7e-10 Score=87.91 Aligned_cols=139 Identities=18% Similarity=0.260 Sum_probs=75.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcc----------ccceeeeeEEEEEEeCCeEEEEEEEeCCCccc--------
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAF----------VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER-------- 82 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------- 82 (221)
.++|+|+|..|+|||||||.|++....... ..+..+......+.-++..+.++++||||...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999987543321 12233344444555566778999999999110
Q ss_pred ----------c--------cccc-hhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc
Q psy2300 83 ----------Y--------RTIT-TAYYRGAMGFILMYDVTNEE-SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 83 ----------~--------~~~~-~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 142 (221)
+ ...+ ...=...|++||+++.+... .-.++ ..+..+.. .+++|-|+.|+|.-...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~----~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK----RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc----cccEEeEEecccccCHH
Confidence 0 0000 01113578999999986532 11222 24444443 68899999999975433
Q ss_pred ccC--HHHHHHHHHHhCCeEEEEe
Q psy2300 143 VIS--FERGKHLAESLGVEFFETS 164 (221)
Q Consensus 143 ~~~--~~~~~~~~~~~~~~~~~~S 164 (221)
++. ...+......+++.+|...
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHcCceeeccc
Confidence 322 1223333455677666533
No 312
>KOG1486|consensus
Probab=99.21 E-value=1.1e-09 Score=82.71 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=100.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc-------cccccchhhcc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE-------RYRTITTAYYR 92 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~ 92 (221)
.-.+|+++|.|++|||||+..+..-..........+.+.-+-.+.. .+..+++.|.||.- ...+......+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y--~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY--NGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe--cCceEEEecCcccccccccCCCCCceEEEEee
Confidence 3578999999999999999999876643333333333444444444 44678999999932 11233445678
Q ss_pred CCcEEEEEEECCChhhHH-HHHHHHHHHHhhCCC----------------------------------------------
Q psy2300 93 GAMGFILMYDVTNEESFT-SIQDWITQIKTYSWD---------------------------------------------- 125 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~-~~~~~~~~l~~~~~~---------------------------------------------- 125 (221)
.+|+++.|.|++..+.-. -+...+..+.-...+
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 899999999998644222 222223322110000
Q ss_pred -------------------CCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 126 -------------------NAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 126 -------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
-.+++.|-||+|. ++.++..++++..+. +.+|+-...|++.+++.|.+.+.
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence 1255666777774 567777777776664 45678888999999999999775
No 313
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.19 E-value=5.7e-10 Score=81.30 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=44.9
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 128 QVILVGNKCDMEDERVISFERGKHLAESLG--VEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 128 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.-++|+||.|+...-..+.+...+-++..+ .+++++|.++|+|++++++|+....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 358999999997766666677776666654 6999999999999999999987643
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.3e-10 Score=89.25 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=57.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEe------------C----CeEEEEEEEeCCCc----
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR------------H----DKRVKLQIWDTAGQ---- 80 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~D~~g~---- 80 (221)
.+++++||.||+|||||.|+++.........|..+++-+.-...+ . .....+.|+|++|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999988754455554444333222211 1 12357899999982
Q ss_pred ---ccccccchhhccCCcEEEEEEECC
Q psy2300 81 ---ERYRTITTAYYRGAMGFILMYDVT 104 (221)
Q Consensus 81 ---~~~~~~~~~~~~~~d~vi~v~d~~ 104 (221)
+......-..++++|++++|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223333344578999999999965
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.17 E-value=5.1e-10 Score=85.87 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=43.3
Q ss_pred EEEEEEeCCCccc-------------ccccchhhcc-CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeC
Q psy2300 70 VKLQIWDTAGQER-------------YRTITTAYYR-GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135 (221)
Q Consensus 70 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 135 (221)
..++++|+||-.. ...+...|+. ..+++++|+|+...-.-.....+...+.. .+.+.++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 4588999999531 1234455666 45699999998653222222233333333 48999999999
Q ss_pred CCCCC
Q psy2300 136 CDMED 140 (221)
Q Consensus 136 ~Dl~~ 140 (221)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99854
No 316
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.7e-10 Score=87.69 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=99.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC----------CC----CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS----------FT----SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
.+.++|..+|+.+.|||||..+++.-- |. .......+++.....+..+-.+..+-..|+||+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 357999999999999999988875311 10 1122345777777777666666788999999999998
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHhCC--
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVIS---FERGKHLAESLGV-- 158 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~-- 158 (221)
.++..-..+.|+.|+|+++.|.. +...+..+....+. +.| +++++||+|+.++.++- ..+.+++...+++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888999999999999832 11122222222332 776 67778999997644322 2346677777763
Q ss_pred ---eEEEEecCC
Q psy2300 159 ---EFFETSAKD 167 (221)
Q Consensus 159 ---~~~~~Sa~~ 167 (221)
|++.-|+..
T Consensus 166 d~~Pii~gSal~ 177 (394)
T COG0050 166 DDTPIIRGSALK 177 (394)
T ss_pred CCcceeechhhh
Confidence 566666554
No 317
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.2e-10 Score=99.67 Aligned_cols=118 Identities=18% Similarity=0.155 Sum_probs=89.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC--C--CCc------------cccceeeeeEEEEEEeCCe-EEEEEEEeCCCc
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDS--F--TSA------------FVSTVGIDFKVKTVFRHDK-RVKLQIWDTAGQ 80 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~--~--~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~ 80 (221)
....-+|.++|+-.+|||||..+++... . .++ .....|++.........+. .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4567889999999999999999987431 0 111 1122366666666655556 489999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
-.|.......++-+|++++|+|+...-..+.-.-|...... +.|.++++||+|..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~ 141 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRL 141 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECcccc
Confidence 99998888899999999999999986555554456555443 89999999999974
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.13 E-value=9.5e-10 Score=93.88 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=72.9
Q ss_pred hhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee-eEEEEEEeCCeEEEEEEEeCCCccccc-------c
Q psy2300 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID-FKVKTVFRHDKRVKLQIWDTAGQERYR-------T 85 (221)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~ 85 (221)
...+-+..++|+|+|.+|+||||++|.|++...........+++ ........+ +..+.++||||..... .
T Consensus 111 g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~nee 188 (763)
T TIGR00993 111 GQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEK 188 (763)
T ss_pred hccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHH
Confidence 34455678999999999999999999999986433221111222 112222233 3579999999954221 1
Q ss_pred c---chhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCC--CCcEEEEEeCCCCCC
Q psy2300 86 I---TTAYYR--GAMGFILMYDVTNEESFTSIQDWITQIKTYSWD--NAQVILVGNKCDMED 140 (221)
Q Consensus 86 ~---~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~Dl~~ 140 (221)
+ ...++. ..|++|+|..++.......-..++..+...... =...|||+|+.|...
T Consensus 189 ILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 189 ILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1 111323 589999999876432221222344444333311 245788999999743
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.12 E-value=4.7e-10 Score=87.79 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=40.8
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 126 NAQVILVGNKCDMEDERVISFERGKHLAESL--GVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 126 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
..+-++|+||+|+........+......+.. ..+++++|+++|+|++++.+||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4667999999999643222333444444443 4689999999999999999998763
No 320
>KOG3886|consensus
Probab=99.10 E-value=2.3e-10 Score=85.08 Aligned_cols=147 Identities=22% Similarity=0.314 Sum_probs=88.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCC-eEEEEEEEeCCCccccc-----ccchhhccCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-KRVKLQIWDTAGQERYR-----TITTAYYRGA 94 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~-----~~~~~~~~~~ 94 (221)
.-||+++|..|+|||++=..+..+.. .-.....|-+..+..-++.. ++..+.+||++|++.+- ......++..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~-a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI-ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh-hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35899999999999998554443321 11112223333333333322 33679999999988442 2445678899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCC--CcccCHHHHHHHH----HHhCCeEEEEecC
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMED--ERVISFERGKHLA----ESLGVEFFETSAK 166 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~----~~~~~~~~~~Sa~ 166 (221)
+++++|||+...+-..++..+...++... .+...+.+...|+|+.. .+....++..... ...++.++++|.+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999988765555555444332222 36777999999999843 2222223222222 2233567777777
Q ss_pred CC
Q psy2300 167 DN 168 (221)
Q Consensus 167 ~~ 168 (221)
+.
T Consensus 163 De 164 (295)
T KOG3886|consen 163 DE 164 (295)
T ss_pred hH
Confidence 64
No 321
>KOG1954|consensus
Probab=99.08 E-value=6e-10 Score=88.31 Aligned_cols=124 Identities=20% Similarity=0.292 Sum_probs=88.9
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc-cccceeeeeEEEEEEeCCeEE-----------------------
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRHDKRV----------------------- 70 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------- 70 (221)
..+.+...-|+++|.-+.||||||+.|+.+.|+.. ..+.+++++....+.-+..++
T Consensus 52 d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~a 131 (532)
T KOG1954|consen 52 DPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNA 131 (532)
T ss_pred CcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHH
Confidence 34556778899999999999999999999998763 344555566665553322111
Q ss_pred ----------------EEEEEeCCCcc-----------cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC
Q psy2300 71 ----------------KLQIWDTAGQE-----------RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS 123 (221)
Q Consensus 71 ----------------~~~i~D~~g~~-----------~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~ 123 (221)
.++|+||||.- .|......|...+|.|+++||+..-+--.++...+..+..+
T Consensus 132 flnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~- 210 (532)
T KOG1954|consen 132 FLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH- 210 (532)
T ss_pred HHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC-
Confidence 16899999921 23344556788999999999987655555566666666654
Q ss_pred CCCCcEEEEEeCCCCCCC
Q psy2300 124 WDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 124 ~~~~p~ivv~nK~Dl~~~ 141 (221)
.-.+-||+||.|..+.
T Consensus 211 --EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 --EDKIRVVLNKADQVDT 226 (532)
T ss_pred --cceeEEEeccccccCH
Confidence 6778899999998554
No 322
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.07 E-value=5.2e-10 Score=80.87 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=65.0
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEE
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFE 162 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (221)
|+.+....+.++|++++|+|+.++....+. .+...+.. .+.|+++|+||+|+.+.... .....+....+.++++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE---LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh---CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 455667778889999999999876432221 22222222 37899999999998543211 1111233345678999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy2300 163 TSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987664
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.3e-09 Score=86.71 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=92.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC----------------CCC----ccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS----------------FTS----AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~----------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
..-..+++-+|.+|||||-.+|+.-. +.. +.....|++.....+.++..+..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 34567999999999999999976321 000 1223346777777777888888999999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV 158 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 158 (221)
|+.|..-+-..+..+|..+.|+|+...-.- ....++... + .++.||+-++||+|.+.... .+.+.+.-+.+++
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVc-r--lR~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L~i 163 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVC-R--LRDIPIFTFINKLDREGRDP--LELLDEIEEELGI 163 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHH-h--hcCCceEEEeeccccccCCh--HHHHHHHHHHhCc
Confidence 999987776778899999999998764321 122233322 2 35999999999999865432 3444444444443
No 324
>KOG0468|consensus
Probab=99.04 E-value=1.5e-09 Score=91.77 Aligned_cols=116 Identities=22% Similarity=0.268 Sum_probs=82.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc---cc------------cceeeeeE--EEEEE---eCCeEEEEEEEeCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSA---FV------------STVGIDFK--VKTVF---RHDKRVKLQIWDTA 78 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---~~------------~~~~~~~~--~~~~~---~~~~~~~~~i~D~~ 78 (221)
+...+|+++|+-.+|||+|+.-|..+..+.- .. ...+.+.. ..++. ..++.+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 4678999999999999999999887643211 00 01122222 22222 24556789999999
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCC
Q psy2300 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138 (221)
Q Consensus 79 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 138 (221)
||-.+.......++.+|++++|+|+.+.-.+..-+-....+. .+.|+++|+||+|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 999888888888999999999999988765544333323332 48999999999995
No 325
>PRK12289 GTPase RsgA; Reviewed
Probab=99.00 E-value=3.3e-09 Score=86.02 Aligned_cols=93 Identities=11% Similarity=0.204 Sum_probs=68.6
Q ss_pred cccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEE
Q psy2300 84 RTITTAYYRGAMGFILMYDVTNEE-SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFE 162 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (221)
..+.+..+.++|.+++|+|+.++. ....+..|+..... .+.|+++|+||+|+...... ..........++.+++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEE
Confidence 344555688999999999998875 44456667666543 38999999999999543221 2222333466789999
Q ss_pred EecCCCCCHHHHHHHHHHH
Q psy2300 163 TSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~ 181 (221)
+||+++.|++++++.|...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988654
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.99 E-value=2.8e-09 Score=79.58 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=64.9
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhC
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLA-----ESLG 157 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 157 (221)
+..++..+++.+|++++|+|+.++... |...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 466677789999999999999875421 11222111 14689999999999864322 223333333 2233
Q ss_pred C---eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 158 V---EFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 158 ~---~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
. .++++||++|.|+++++++|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2 6899999999999999999988764
No 327
>KOG1487|consensus
Probab=98.99 E-value=5.2e-09 Score=79.39 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc-------cccccchhhccC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE-------RYRTITTAYYRG 93 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~ 93 (221)
.-+|.++|.|++|||||+..+.+...+ .....+++.....-....+.-.+++.|.||.- ..........+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~--vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSE--VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCc--cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 348999999999999999999887532 22333333333333333345679999999932 122334445788
Q ss_pred CcEEEEEEECCChhhHHHHHH-----------------------------------------HHHHHHhh----------
Q psy2300 94 AMGFILMYDVTNEESFTSIQD-----------------------------------------WITQIKTY---------- 122 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~-----------------------------------------~~~~l~~~---------- 122 (221)
|+++++|.|+..|-+...+.. .+.....+
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 999999999765433222211 00000000
Q ss_pred -----------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH--Hhhccc
Q psy2300 123 -----------SWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC--DKMSES 189 (221)
Q Consensus 123 -----------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~--~~~~~~ 189 (221)
...-.|.+++.||+|...- ++..-.. .....+++||.+++|++++++-+.+.+. +.+.++
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsISi-----EELdii~--~iphavpISA~~~wn~d~lL~~mweyL~LvriYtkP 289 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSISI-----EELDIIY--TIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTKP 289 (358)
T ss_pred chhhhhhhhccCceeeeeeeeecccceeee-----eccceee--eccceeecccccccchHHHHHHHhhcchheEEecCC
Confidence 0013577888888885332 2221111 1125789999999999999999998653 445666
Q ss_pred cCCCCCCCCC
Q psy2300 190 LDSDPNLVAG 199 (221)
Q Consensus 190 ~~~~~~~~~~ 199 (221)
....|+-..+
T Consensus 290 Kgq~PDy~~p 299 (358)
T KOG1487|consen 290 KGQPPDYTSP 299 (358)
T ss_pred CCCCCCCCCC
Confidence 6666655443
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.97 E-value=4.1e-09 Score=81.69 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=64.7
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHH
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERG 149 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 149 (221)
+.+.|++|.|--.. -.....-+|.+++|.-..-.+..+-++.=+. ..--++|+||.|.......-.+..
T Consensus 144 ~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim--------EiaDi~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 144 YDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIM--------EIADIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhh--------hhhheeeEeccChhhHHHHHHHHH
Confidence 44677888763211 1234566899998887665665555544222 234588999999755422111111
Q ss_pred H--HHH----HHhC--CeEEEEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 150 K--HLA----ESLG--VEFFETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 150 ~--~~~----~~~~--~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
. .+. ...+ -+++.+||.+|+|++++++.|.+...-.
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 1 111 1112 4799999999999999999988865433
No 329
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.95 E-value=3.5e-10 Score=86.34 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=83.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-------ccccce-------------------eeeeEEEEEEeCC------
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTS-------AFVSTV-------------------GIDFKVKTVFRHD------ 67 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-------~~~~~~-------------------~~~~~~~~~~~~~------ 67 (221)
+.+.|.|.|+||+|||||+++|...-... ...|+. ....+...+...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 57899999999999999999876421000 001110 1112333321111
Q ss_pred ------------eEEEEEEEeCCC--cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEE
Q psy2300 68 ------------KRVKLQIWDTAG--QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133 (221)
Q Consensus 68 ------------~~~~~~i~D~~g--~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~ 133 (221)
-++.+.|++|.| +.+. ....-+|.+++|....-.+..+.++.-+.+ ..-++|+
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vV 174 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEE
Confidence 124467777765 3322 346679999999987766555544442222 3458999
Q ss_pred eCCCCCCCcccCHHHHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 134 NKCDMEDERVISFERGKHLAESL-------GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 134 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
||.|.+..... ..+.+...... ..+++.+||.++.|++++++.|.+..
T Consensus 175 NKaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp E--SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eCCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 99996543322 22222222211 24899999999999999999987754
No 330
>KOG1547|consensus
Probab=98.95 E-value=1.6e-08 Score=75.94 Aligned_cols=164 Identities=15% Similarity=0.222 Sum_probs=92.8
Q ss_pred hhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc---------cccceeeeeEEEEEEeCCeEEEEEEEeCC
Q psy2300 8 KWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA---------FVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78 (221)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 78 (221)
..|.+......-..|+|.|||..|.|||||+|.+...+.... +..|..+......+.-++-..+++++|||
T Consensus 33 ~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTP 112 (336)
T KOG1547|consen 33 IEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTP 112 (336)
T ss_pred HHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCC
Confidence 345555555556689999999999999999999876543221 11122222223333345556788999999
Q ss_pred Ccc-------cc-------------------cccchhhc--cCCcEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcE
Q psy2300 79 GQE-------RY-------------------RTITTAYY--RGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQV 129 (221)
Q Consensus 79 g~~-------~~-------------------~~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ 129 (221)
|.- .| ...+...+ ..+++++|.+..+.. ++.-+. .++..+.+ -+-+
T Consensus 113 GfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNv 187 (336)
T KOG1547|consen 113 GFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNV 187 (336)
T ss_pred CcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hhee
Confidence 921 11 11111222 246788888887643 222222 23334433 4667
Q ss_pred EEEEeCCCCCC--CcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 130 ILVGNKCDMED--ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 130 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
|-|+.|.|.-. .+..-.+..+.....+++.+++-.+.+...=+..++
T Consensus 188 vPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 188 VPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred eeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 88889999632 111222334455566788888776665443333333
No 331
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.95 E-value=7.3e-09 Score=82.66 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=97.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------cccc--ceeeeeEEEEEE----------------
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS--------------AFVS--TVGIDFKVKTVF---------------- 64 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~--~~~~~~~~~~~~---------------- 64 (221)
..+..+.|++.|+.++|||||+-.|..+.... +... +...++...-+.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34567899999999999999999887654322 1111 112222222110
Q ss_pred ---eCCeEEEEEEEeCCCcccccccch--hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 65 ---RHDKRVKLQIWDTAGQERYRTITT--AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 65 ---~~~~~~~~~i~D~~g~~~~~~~~~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
++..+--+.|.|+.|++.|-+... .+-.+.|..++++.++|.-+... +..+..... -..|++|+++|+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhh---hcCCEEEEEEecccC
Confidence 011112368999999999876443 34467999999999998643222 222222222 289999999999985
Q ss_pred CCcccC--HHHHHHHHHHh------------------------C-CeEEEEecCCCCCHHHHHHHHHH
Q psy2300 140 DERVIS--FERGKHLAESL------------------------G-VEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~------------------------~-~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
.+.... .++.....+.. + .|+|.+|+.+|+|++-|.+.+..
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 432111 11222222211 1 47999999999999876665443
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=98.95 E-value=4.9e-09 Score=83.63 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=64.9
Q ss_pred hccCCcEEEEEEECCChhhHHH-HHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC
Q psy2300 90 YYRGAMGFILMYDVTNEESFTS-IQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN 168 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (221)
.+.++|++++|+|+.++..... +..|+..+.. .+.|+++|+||+|+.+... ............+++++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3589999999999988765444 4567666654 3799999999999953322 122334445566789999999999
Q ss_pred CCHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVD 180 (221)
Q Consensus 169 ~gi~~l~~~i~~ 180 (221)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999988753
No 333
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.95 E-value=5.9e-09 Score=82.72 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=67.5
Q ss_pred hccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC
Q psy2300 90 YYRGAMGFILMYDVTNEE-SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN 168 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (221)
.+.++|.+++|+|+.++. ++..+..|+..+... +.|+++|+||+|+..... ......+....+.+++.+|++++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence 478899999999999887 788888888777653 799999999999955321 12223334456789999999999
Q ss_pred CCHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVD 180 (221)
Q Consensus 169 ~gi~~l~~~i~~ 180 (221)
.|+++++..|..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988764
No 334
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.93 E-value=6.4e-09 Score=86.12 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=77.9
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCC
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN----------EESFTSIQDWITQIKTY-SWDNAQVILVGNKC 136 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~ 136 (221)
....+.++|++|+...+.-|..++.++++||||+++++ ...+.+...++..+-.. ...+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 34678999999999888899999999999999999764 12344444444444322 23589999999999
Q ss_pred CCC-----C-C----------c--ccCHHHHHHHHHHh------------CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 137 DME-----D-E----------R--VISFERGKHLAESL------------GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 137 Dl~-----~-~----------~--~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
|+- . . - .-..+.+..+.... .+.++.++|.+...+..+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 961 1 1 0 12344444444332 12566899999899999998887653
No 335
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.92 E-value=6.3e-08 Score=77.16 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=85.7
Q ss_pred hhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA----------FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 11 ~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
..+..-..--.+.|+++|+.|.|||||+|.|++...... ..++..+......+.-++-.++++++||||.
T Consensus 13 r~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 13 RHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred HHHHHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 333333334579999999999999999999998743222 1233334444444444555688999999992
Q ss_pred ccc---cccch-------------------------hhccCCcEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEE
Q psy2300 81 ERY---RTITT-------------------------AYYRGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVIL 131 (221)
Q Consensus 81 ~~~---~~~~~-------------------------~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iv 131 (221)
-.+ ...|. ..=...+++||.+..+... +..+. ..+..+. ..+-+|-
T Consensus 93 GD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls----~~vNlIP 167 (373)
T COG5019 93 GDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS----KRVNLIP 167 (373)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh----cccCeee
Confidence 100 01111 0113478899999866422 22222 2333443 3678999
Q ss_pred EEeCCCCCCCcccC--HHHHHHHHHHhCCeEEE
Q psy2300 132 VGNKCDMEDERVIS--FERGKHLAESLGVEFFE 162 (221)
Q Consensus 132 v~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 162 (221)
|+.|+|.-...++. .+.+.+-...+++++|.
T Consensus 168 VI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 168 VIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred eeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 99999974432221 12233444556777763
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.86 E-value=2.5e-08 Score=80.91 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=67.3
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHhCCeEEEEecCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI-SFERGKHLAESLGVEFFETSAKDNV 169 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (221)
..++|.+++|++.....++..+..|+..... .+.|.++|+||+|+...... ............+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4569999999999888889999889876654 37999999999999543211 1122233344567899999999999
Q ss_pred CHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDI 181 (221)
Q Consensus 170 gi~~l~~~i~~~ 181 (221)
|+++++++|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 337
>KOG2655|consensus
Probab=98.86 E-value=1.2e-07 Score=76.07 Aligned_cols=157 Identities=15% Similarity=0.278 Sum_probs=89.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCc---------cccceeeeeEEEEEEeCCeEEEEEEEeCCCcc-------cc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSA---------FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE-------RY 83 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~ 83 (221)
..+.++++|+.|.|||||||.|+...+... ...+.........+.-++-.+++++.||||.- .|
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 469999999999999999999987754322 11222333333344445556889999999911 11
Q ss_pred c------------------ccchhhcc--CCcEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCc
Q psy2300 84 R------------------TITTAYYR--GAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 84 ~------------------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 142 (221)
. .+.+..+. ..+++||.+..+... +..+. ..+..+. ..+.+|-|+.|.|.-...
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 1 11111222 688999999876432 22222 2333343 378899999999985543
Q ss_pred ccCH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 143 VISF--ERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 143 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
++.. .....-+..+++++|....-.. ++.+-...+.+..
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~ 215 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKS 215 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhh
Confidence 3221 1233334455676665444332 3444333444443
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=8.9e-09 Score=73.14 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
+++++|.+|+|||||+|++.+.... ......+.+.....+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999988753 3334445555555555543 4789999985
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.80 E-value=1.9e-08 Score=73.72 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=43.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
...++|+|+|.||+|||||+|++.+... ....+.+|+|.....+..+. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 4468999999999999999999998764 23345566666655555432 578999998
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=2.9e-08 Score=71.82 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
..++|+++|.||+|||||+|+|.+... ....+..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV-CKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc-eeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 457899999999999999999998653 22344455555544444332 367999998
No 341
>KOG1143|consensus
Probab=98.76 E-value=4.9e-08 Score=77.85 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=92.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------cccc--ceeeeeEEEE-------EEe----------C
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTS--------------AFVS--TVGIDFKVKT-------VFR----------H 66 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~--~~~~~~~~~~-------~~~----------~ 66 (221)
-.++++|+|.-.+|||||+-.|..+..+. +..+ |..+.....- +.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 47899999999999999998887654321 1111 1111111100 000 0
Q ss_pred CeEEEEEEEeCCCcccccccchhhccC--CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 67 DKRVKLQIWDTAGQERYRTITTAYYRG--AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
...--++|+|.+|+..|.......+.+ .|..++|++++..-... .+..+..+... +.|++|+++|+|+.....+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence 011237899999999998776655543 68888999887643222 12233333333 8999999999998543211
Q ss_pred C--HHHHHHH----------------------HHHh---C-CeEEEEecCCCCCHHHHHHHH
Q psy2300 145 S--FERGKHL----------------------AESL---G-VEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 145 ~--~~~~~~~----------------------~~~~---~-~~~~~~Sa~~~~gi~~l~~~i 178 (221)
. ..+...+ ++.. + .|+|.+|+.+|+|++-+...+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 1 1111111 1111 2 479999999999998765543
No 342
>KOG0099|consensus
Probab=98.75 E-value=7.2e-08 Score=73.38 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=80.6
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCC
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN----------EESFTSIQDWITQIKTYS-WDNAQVILVGNKC 136 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~ 136 (221)
..++++.+|.+|+..-+.-|...+.+..++|||+..+. ...+.+...++..+.... .....+|+++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 34678999999998888889999999999999998763 123333444555554443 3578899999999
Q ss_pred CCCCC----------------------------cccC--HHHHHHHHH----Hh---------CCeEEEEecCCCCCHHH
Q psy2300 137 DMEDE----------------------------RVIS--FERGKHLAE----SL---------GVEFFETSAKDNVNVKG 173 (221)
Q Consensus 137 Dl~~~----------------------------~~~~--~~~~~~~~~----~~---------~~~~~~~Sa~~~~gi~~ 173 (221)
|+-.. ...+ +..++-+.+ ++ -+.+.++.|.+-++|..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 97210 0000 011111111 11 13456788999999999
Q ss_pred HHHHHHHHHHHhhccc
Q psy2300 174 VFERLVDIICDKMSES 189 (221)
Q Consensus 174 l~~~i~~~~~~~~~~~ 189 (221)
+|+...+.+.......
T Consensus 360 VFnDcrdiIqr~hlrq 375 (379)
T KOG0099|consen 360 VFNDCRDIIQRMHLRQ 375 (379)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888887665443
No 343
>KOG2486|consensus
Probab=98.75 E-value=1.1e-08 Score=78.47 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=94.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccc-ceeeeeEEEEEEeCCeEEEEEEEeCCC----------cccccc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS-TVGIDFKVKTVFRHDKRVKLQIWDTAG----------QERYRT 85 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~ 85 (221)
|.+....++++|-.|+|||+||+-+...+....... ..+.+.....+.+. -.+.+.|.|| ...+..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhH
Confidence 445679999999999999999999988764433333 55555555555443 3577899999 123444
Q ss_pred cchhhccCCc---EEEEEEECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCCcc-------cC----HHHHH
Q psy2300 86 ITTAYYRGAM---GFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDERV-------IS----FERGK 150 (221)
Q Consensus 86 ~~~~~~~~~d---~vi~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-------~~----~~~~~ 150 (221)
....|+.+-+ -+++.+|++-+- ..... .+..+.++ ++|+.+|+||+|...... .+ +....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge~---~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGEN---NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhhc---CCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 4555554322 355666665321 11111 22334443 899999999999732111 11 11111
Q ss_pred HHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 151 HLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 151 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
........+++.+|+.++.|+++|+-.|.+.
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 1111123566779999999999987766543
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.74 E-value=4.4e-08 Score=80.14 Aligned_cols=95 Identities=19% Similarity=0.356 Sum_probs=67.8
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHH
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGK----HLAES 155 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~ 155 (221)
.+.|..+...+...++++++|+|+.+.. ..|...+..+. .+.|+++|+||+|+... ....+... ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4567777777888999999999997753 12334444332 36899999999998543 22333333 33555
Q ss_pred hCC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2300 156 LGV---EFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 156 ~~~---~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
.++ .++.+||++|.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 665 48999999999999999998664
No 345
>KOG1491|consensus
Probab=98.73 E-value=1.7e-08 Score=79.35 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=60.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCC---------------eEEEEEEEeCCCcc---
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD---------------KRVKLQIWDTAGQE--- 81 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~--- 81 (221)
+.+++++||.||+|||||.|.|+.....+...|..+++-....+.+.. ....++++|++|--
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 678999999999999999999999987776666665554444332211 12468999999821
Q ss_pred ----cccccchhhccCCcEEEEEEECC
Q psy2300 82 ----RYRTITTAYYRGAMGFILMYDVT 104 (221)
Q Consensus 82 ----~~~~~~~~~~~~~d~vi~v~d~~ 104 (221)
....-....++.+|+++.|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 12222334578899999999864
No 346
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.6e-07 Score=78.64 Aligned_cols=112 Identities=12% Similarity=0.135 Sum_probs=72.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
+.++.+-|+|+|+||+||||||+.|...-. ......+ ..++++ +.++..+++|.++|. .... ......-+|+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~t-k~ti~~i---~GPiTv-vsgK~RRiTflEcp~--Dl~~-miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFT-KQTIDEI---RGPITV-VSGKTRRITFLECPS--DLHQ-MIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHH-Hhhhhcc---CCceEE-eecceeEEEEEeChH--HHHH-HHhHHHhhhe
Confidence 334678899999999999999998876531 1111111 112222 235667899999983 2222 2335677999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCC
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMED 140 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~ 140 (221)
+++++|..-.-.++.+ .+++.+..+ +.| ++-|+++.|+-.
T Consensus 137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk 177 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFK 177 (1077)
T ss_pred eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeeccccc
Confidence 9999998865544444 344444444 666 566789999854
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.71 E-value=8.7e-08 Score=69.29 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=57.7
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2300 90 YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNV 169 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (221)
.+..+|++++|+|+.++.... ...+...+... ..+.|+++|+||+|+...... ......+.+.+...++.+||+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 578899999999999863221 11222233222 236899999999999543211 111222222222335789999999
Q ss_pred CHHHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDIIC 183 (221)
Q Consensus 170 gi~~l~~~i~~~~~ 183 (221)
|++++++++.+.+.
T Consensus 82 ~~~~L~~~l~~~~~ 95 (157)
T cd01858 82 GKGSLIQLLRQFSK 95 (157)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999877543
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.69 E-value=5.5e-08 Score=71.35 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=43.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
+..++++++|.+|+|||||++++.+..+. ......++++....+..+ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34589999999999999999999987753 334445556665555554 35789999983
No 349
>KOG0460|consensus
Probab=98.69 E-value=1.4e-07 Score=74.35 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=95.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC----------CCC----CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD----------SFT----SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
.+.++|.-+|+...|||||--++..- +|. .......|++.+...+.+.-....+-=.|+||+..|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 35789999999999999997776421 111 0112334667776666665555677788999999998
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCC-cEEEEEeCCCCCCCcc---cCHHHHHHHHHHhC---
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNA-QVILVGNKCDMEDERV---ISFERGKHLAESLG--- 157 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~--- 157 (221)
.++..-..+.|+.|+|++++|.. +...+..+..-.+. ++ .++|++||.|+.++.+ +-.-+++++...++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888999999999999853 23333333333343 44 4888899999974322 12234566666665
Q ss_pred --CeEEEEec
Q psy2300 158 --VEFFETSA 165 (221)
Q Consensus 158 --~~~~~~Sa 165 (221)
+|++.=||
T Consensus 208 d~~PvI~GSA 217 (449)
T KOG0460|consen 208 DNTPVIRGSA 217 (449)
T ss_pred CCCCeeecch
Confidence 56775444
No 350
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.69 E-value=7.1e-08 Score=78.17 Aligned_cols=83 Identities=17% Similarity=0.029 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeeEEEEEEeCCe---------------EEEEEEEeCCCccc---
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRHDK---------------RVKLQIWDTAGQER--- 82 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 82 (221)
++++++|.|++|||||.+.+++... .....|..+.......+.+... ...+.+.|+||--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999875 4443344333333333333321 24678999999322
Q ss_pred ----ccccchhhccCCcEEEEEEECC
Q psy2300 83 ----YRTITTAYYRGAMGFILMYDVT 104 (221)
Q Consensus 83 ----~~~~~~~~~~~~d~vi~v~d~~ 104 (221)
........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2222334578999999999974
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.67 E-value=4.5e-08 Score=73.05 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=42.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-------CccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFT-------SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
..+++++|.+|+|||||+|.|.+.... ......+++|.....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 468999999999999999999975421 12334456777777776643 478999998
No 352
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.66 E-value=1.6e-07 Score=67.82 Aligned_cols=83 Identities=20% Similarity=0.119 Sum_probs=55.4
Q ss_pred cEEEEEEECCChhhHHHHHHHHH--HHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 95 MGFILMYDVTNEESFTSIQDWIT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~--~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
|++++|+|+.++.+.... ++. .+.. .+.|+++|+||+|+.....+ ......+....+..++.+||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999887654322 222 2222 47999999999999543211 011112222234578999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 173 GVFERLVDIIC 183 (221)
Q Consensus 173 ~l~~~i~~~~~ 183 (221)
++++.+.+.+.
T Consensus 75 ~L~~~i~~~~~ 85 (155)
T cd01849 75 KKESAFTKQTN 85 (155)
T ss_pred hHHHHHHHHhH
Confidence 99999887654
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=1.3e-07 Score=75.18 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=44.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
...++|+|+|.||+|||||+|+|.+.... ...+.+++|.....+..+. .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 45689999999999999999999987642 3345566666665555442 4779999995
No 354
>KOG0463|consensus
Probab=98.65 E-value=1e-07 Score=76.13 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=92.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------ccc--cc----------------------eeeeeEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTS--------------AFV--ST----------------------VGIDFKVK 61 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~--------------~~~--~~----------------------~~~~~~~~ 61 (221)
-.++|+|||...+|||||+-.|....... +.. .| .+......
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 37899999999999999998766543211 100 11 11122223
Q ss_pred EEEeCCeEEEEEEEeCCCcccccccchhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 62 TVFRHDKRVKLQIWDTAGQERYRTITTAYYR--GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 62 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
.+.-+.. -.++|+|..|++.|-.....-.. -.|...+++-++-. -+.-....+..-.. -.+|++||++|+|+.
T Consensus 212 kIce~sa-KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICEDSA-KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccccc-eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence 3322222 24889999999998776554332 36777777765431 11111222222222 279999999999997
Q ss_pred CCcccCHH--HHHHHHHHh--------------------------CCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 140 DERVISFE--RGKHLAESL--------------------------GVEFFETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 140 ~~~~~~~~--~~~~~~~~~--------------------------~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
.+..+... .+.++.+.. -+++|.+|-.+|.|++.+... +..+.-+
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF-LNlls~R 359 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF-LNLLSLR 359 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH-HhhcCcc
Confidence 66544321 122222221 157899999999999875544 3444333
No 355
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.64 E-value=1.7e-06 Score=70.52 Aligned_cols=159 Identities=14% Similarity=0.237 Sum_probs=93.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc--------------cceee---ee-------EEEEEEe-CCeEEEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV--------------STVGI---DF-------KVKTVFR-HDKRVKLQI 74 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~---~~-------~~~~~~~-~~~~~~~~i 74 (221)
.-+=|+|||+..+||||||+||....+.+... +..|. |. ....+.+ ++-.+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 34779999999999999999997643221110 11111 11 1223334 445688999
Q ss_pred EeCCC-------------ccccccc-c---------------hhhcc--CCcEEEEEEECC--C--hhhHHHHHH-HHHH
Q psy2300 75 WDTAG-------------QERYRTI-T---------------TAYYR--GAMGFILMYDVT--N--EESFTSIQD-WITQ 118 (221)
Q Consensus 75 ~D~~g-------------~~~~~~~-~---------------~~~~~--~~d~vi~v~d~~--~--~~s~~~~~~-~~~~ 118 (221)
+|+-| .+++... | +..+. ..-++++.-|.+ + ++.+..+.. .+..
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99987 0111110 0 00111 223455555544 2 455555544 6777
Q ss_pred HHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 119 IKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 119 l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
|+.. ++||++++|-.+-. .....+...++..+++.+++++++.. ..-+++..-|.+.+.+
T Consensus 176 Lk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLYE 235 (492)
T ss_pred HHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHhc
Confidence 7766 89999999988752 23345667788889999999888753 3444544444444433
No 356
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=1.1e-07 Score=75.16 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=43.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
...++++|+|.||+|||||+|+|.+.... .....+++|.....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVA-KVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999987642 2344556666655555432 4789999996
No 357
>KOG3887|consensus
Probab=98.63 E-value=2.8e-07 Score=69.48 Aligned_cols=162 Identities=18% Similarity=0.237 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc-c--cchhhccCCcEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR-T--ITTAYYRGAMGF 97 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--~~~~~~~~~d~v 97 (221)
..+|+++|...+||||+-+.......+.+ .-....+-....-++.+.-+.+.+||.||+-.+- . -....++++.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45699999999999998776665543222 1111222222222333344789999999974332 1 234568999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHHHhC-----CeEEEE
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDE-------RVISFERGKHLAESLG-----VEFFET 163 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~~~-----~~~~~~ 163 (221)
++|+|+.+. -.+.+..+-..+.+.- .++..+=|++.|.|--.. +.+.. ...+.....+ +.++.+
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~q-r~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQ-RTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHH-HhhHHHHhhhhccceEEEEEe
Confidence 999998763 2233333222222211 467889999999995221 11111 1111111122 356667
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 164 SAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
|..+ ..|-|.|..+.+.+..+.
T Consensus 184 SIyD-HSIfEAFSkvVQkLipqL 205 (347)
T KOG3887|consen 184 SIYD-HSIFEAFSKVVQKLIPQL 205 (347)
T ss_pred eecc-hHHHHHHHHHHHHHhhhc
Confidence 7664 577788888888776553
No 358
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.62 E-value=8.5e-08 Score=77.20 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=47.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
..++++|+|.||+|||||||+|.+... ....+.+|+|.....+..+.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 358899999999999999999999875 455666788888777776654 779999994
No 359
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=1.4e-07 Score=68.03 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=40.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
...+++++|.+|+|||||++++.+... ..+.++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457889999999999999999997652 34455666555444333332 588999998
No 360
>KOG0466|consensus
Probab=98.60 E-value=2.6e-08 Score=77.35 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=99.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--ceeeeeEEEEE---------------------------Ee-
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS---FTSAFVS--TVGIDFKVKTV---------------------------FR- 65 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~---------------------------~~- 65 (221)
...++|.-+|+...||||+++++++-. |..+... |+...|....+ ..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 467999999999999999999987642 1111111 11111100000 00
Q ss_pred --CCe---EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCC
Q psy2300 66 --HDK---RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN----EESFTSIQDWITQIKTYSWDNAQVILVGNKC 136 (221)
Q Consensus 66 --~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 136 (221)
.++ -..+.|.|+||++-....+..-..-.|++++++..+. |+..+++.. ++-. .-..++++-||.
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa----veiM--~LkhiiilQNKi 189 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA----VEIM--KLKHIIILQNKI 189 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH----HHHh--hhceEEEEechh
Confidence 111 0357899999998665544444455688888887765 455555543 2222 146688999999
Q ss_pred CCCCCc--ccCHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 137 DMEDER--VISFERGKHLAESL---GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 137 Dl~~~~--~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
|+.... ....+....|.... +.+++++||.-..|++-+.++|.+.+
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 995432 23344555665543 46999999999999999999887766
No 361
>KOG0467|consensus
Probab=98.58 E-value=2.2e-07 Score=79.99 Aligned_cols=119 Identities=19% Similarity=0.194 Sum_probs=86.5
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCC--------------CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSF--------------TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
+.+.+..-+++++-+...|||||+..|....- ..+...+.|+|...-.+..-.+++.+.++|+|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 34556778899999999999999999875421 1233445566666666655556788999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCC
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 137 (221)
-.|........+-+|+.++++|+...--.+... .+.+... .+...++|+||+|
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~~---~~~~~~lvinkid 135 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI---EGLKPILVINKID 135 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHHH---ccCceEEEEehhh
Confidence 999988888899999999999988653322222 2222222 3678889999999
No 362
>KOG0085|consensus
Probab=98.56 E-value=3.3e-08 Score=73.92 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=82.7
Q ss_pred eCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhC-CCCCcEEEEE
Q psy2300 65 RHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN----------EESFTSIQDWITQIKTYS-WDNAQVILVG 133 (221)
Q Consensus 65 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ivv~ 133 (221)
++-..+.+.+.|.+|+..-+.-|.+.+.+.-.++|++.++. ...+++-..++.-+-.+- -.+.++|+++
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 34445667889999988777778888888777777666542 334444444444443221 2478999999
Q ss_pred eCCCCCCCc----------------ccCHHHHHHHHHHh----C------CeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 134 NKCDMEDER----------------VISFERGKHLAESL----G------VEFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 134 nK~Dl~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
||.|+-+.. ..+...+++|.... + +.-..+.|++-+||.-+|.++.+.+++...
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 999973321 12223344444332 2 223578899999999999999999988876
Q ss_pred cccC
Q psy2300 188 ESLD 191 (221)
Q Consensus 188 ~~~~ 191 (221)
+.++
T Consensus 354 kE~N 357 (359)
T KOG0085|consen 354 KEYN 357 (359)
T ss_pred Hhhc
Confidence 5543
No 363
>KOG0448|consensus
Probab=98.55 E-value=1.8e-06 Score=73.75 Aligned_cols=145 Identities=18% Similarity=0.281 Sum_probs=82.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc-cccce----------eee-----------------------------
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTV----------GID----------------------------- 57 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~----------~~~----------------------------- 57 (221)
.+...||++.|..++||||++|+++..+..++ ..+++ |..
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 34678999999999999999999886543221 11110 000
Q ss_pred ---eEEEEEEeCCeE-----EEEEEEeCCCcc---cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCC
Q psy2300 58 ---FKVKTVFRHDKR-----VKLQIWDTAGQE---RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDN 126 (221)
Q Consensus 58 ---~~~~~~~~~~~~-----~~~~i~D~~g~~---~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~ 126 (221)
.....+..+... -.+.+.|.||-+ ....-...+...+|++|||..+.+...... .+++..... .+
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~K 261 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EK 261 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cC
Confidence 001111111111 135688889844 333334556789999999999876543322 234444433 24
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--------CeEEEEecC
Q psy2300 127 AQVILVGNKCDMEDERVISFERGKHLAESLG--------VEFFETSAK 166 (221)
Q Consensus 127 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 166 (221)
..+.|+.||.|....+....+++..-...+. -.+|++|++
T Consensus 262 pniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 262 PNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred CcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 4577777899986554433333333322221 247889965
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.53 E-value=2.9e-07 Score=67.53 Aligned_cols=89 Identities=19% Similarity=0.100 Sum_probs=60.1
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecC
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAK 166 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 166 (221)
....+..+|++++|+|+.++...... .+...+ .+.|.++|+||+|+.+.... ....++.+..+..++.+|++
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~ 84 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAK 84 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECC
Confidence 34567899999999999876432221 122211 25799999999999543211 11212223334578999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy2300 167 DNVNVKGVFERLVDIIC 183 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~~~ 183 (221)
++.|++++.+.+...+.
T Consensus 85 ~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 85 SGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CcccHHHHHHHHHHHHH
Confidence 99999999999888764
No 365
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.51 E-value=4.3e-07 Score=64.42 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=51.7
Q ss_pred hhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecC
Q psy2300 89 AYYRGAMGFILMYDVTNEESFT--SIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAK 166 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 166 (221)
..+..+|++++|+|+.++.+.. .+..|+... . .+.|+++|+||+|+..... ......+.+..+..++++||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 4578999999999998876543 333333322 1 4789999999999854322 223444555566789999999
Q ss_pred CCC
Q psy2300 167 DNV 169 (221)
Q Consensus 167 ~~~ 169 (221)
++.
T Consensus 81 ~~~ 83 (141)
T cd01857 81 KEN 83 (141)
T ss_pred CCC
Confidence 875
No 366
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.51 E-value=2.9e-06 Score=64.93 Aligned_cols=86 Identities=14% Similarity=-0.004 Sum_probs=53.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeeEEEEEEeC---CeEEEEEEEeCCCccccc------ccch
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD--SFTSAFVSTVGIDFKVKTVFRH---DKRVKLQIWDTAGQERYR------TITT 88 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~g~~~~~------~~~~ 88 (221)
+..-|+|+|++++|||+|+|.|.+. .|..... ....|..+...... +....+.++||+|..... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~-~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDT-SQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCC-CCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 4677999999999999999999998 5532211 11222222222111 134679999999954322 1222
Q ss_pred hhccC--CcEEEEEEECCCh
Q psy2300 89 AYYRG--AMGFILMYDVTNE 106 (221)
Q Consensus 89 ~~~~~--~d~vi~v~d~~~~ 106 (221)
..+.. ++++||..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 33344 8899988887643
No 367
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.50 E-value=1.2e-05 Score=57.12 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=76.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCC-Ccc--------------cc-
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA-GQE--------------RY- 83 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~--------------~~- 83 (221)
..++|++.|+||+|||||+.++.+..-... ..-- .+....+..++..+-|.+.|+. |.. .|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG-YKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC-ceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 468999999999999999999875431110 1111 2333333344555666666665 210 11
Q ss_pred ------c----ccchhhccCCcEEEEEEECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q psy2300 84 ------R----TITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHL 152 (221)
Q Consensus 84 ------~----~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 152 (221)
. ......+..||++++ |=--+ ++.... +...+......+.|++..+.+.+. + -..++
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr-~------P~v~~- 148 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR-H------PLVQR- 148 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC-C------hHHHH-
Confidence 1 111223355676654 42222 222222 444444444468888888876653 1 11222
Q ss_pred HHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 153 AESLGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 153 ~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
.+..+.-+++ .+.+|-+.+++.+.+.+-
T Consensus 149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 149 IKKLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred hhhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 2333333333 566677788887777653
No 368
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.47 E-value=1.7e-06 Score=80.74 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=66.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcc----ccc--eeeeeEEEEEEeCCeEEEEEEEeCCCcc--------cccccchh
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSAF----VST--VGIDFKVKTVFRHDKRVKLQIWDTAGQE--------RYRTITTA 89 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 89 (221)
.+|+|++|+||||+|..- +..++-.. ..+ .+-+.+ -...+.++ -.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecCC---EEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999876 43443211 011 111111 11222222 3489999921 22233544
Q ss_pred hc---------cCCcEEEEEEECCC-----hhhH----HHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 90 YY---------RGAMGFILMYDVTN-----EESF----TSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 90 ~~---------~~~d~vi~v~d~~~-----~~s~----~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
++ +..++||+++|+.+ ++.. ..++..+..+.....-..|++|++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 43 45899999999764 2211 2334445555555567899999999999853
No 369
>KOG0464|consensus
Probab=98.47 E-value=5.3e-08 Score=78.63 Aligned_cols=121 Identities=19% Similarity=0.153 Sum_probs=94.1
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcC--------CCCC--------ccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADD--------SFTS--------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
.+....-+|.++.+-.+||||.-.+++.- .+.. ......|++.....+.+++++.++.++||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 33344567999999999999998887632 1111 1122347788888899999999999999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
+-.|.-..+..++--|+++.|||++-.-.-+.+..|.+.-+ -+.|...++||+|.-.
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltvwrqadk----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK----FKIPAHCFINKMDKLA 168 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccc----cCCchhhhhhhhhhhh
Confidence 99998888889999999999999987665566666766533 2799999999999743
No 370
>KOG0447|consensus
Probab=98.44 E-value=6.3e-06 Score=69.08 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-c------------------------------cccc-------------
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTS-A------------------------------FVST------------- 53 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~------------------------------~~~~------------- 53 (221)
.+...+|+|||+.++||||.+..+......+ . +.-|
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 3567899999999999999998876432111 0 0000
Q ss_pred ----------eeeeeEEEEEEeCCeE-EEEEEEeCCCc-------------ccccccchhhccCCcEEEEEEECCChhhH
Q psy2300 54 ----------VGIDFKVKTVFRHDKR-VKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDVTNEESF 109 (221)
Q Consensus 54 ----------~~~~~~~~~~~~~~~~-~~~~i~D~~g~-------------~~~~~~~~~~~~~~d~vi~v~d~~~~~s~ 109 (221)
-+++-.++.+.+.+.+ -+..+.|.||. +....+...+..+.+++|+|+--..-+..
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 0111123334444433 35778999992 23345566788999999999953332211
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh
Q psy2300 110 TSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESL 156 (221)
Q Consensus 110 ~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 156 (221)
. ...-..+......+...|+|++|.|+.+....++..++......
T Consensus 465 R--SnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGK 509 (980)
T KOG0447|consen 465 R--SIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGK 509 (980)
T ss_pred h--hhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcC
Confidence 1 12223333444458889999999999877777777777766544
No 371
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.42 E-value=6.2e-07 Score=64.68 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=39.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
....+++++|.+|+|||||+|.+.+..... .....+++........+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCC
Confidence 356889999999999999999999865311 22223444444444333 3488999998
No 372
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.41 E-value=2.2e-06 Score=67.76 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=61.4
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecC
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAK 166 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 166 (221)
....+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+.... .......+..+.+++.+|++
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~ 86 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAK 86 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECC
Confidence 34567899999999999876443221 111222 26899999999999542211 11112223345678999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy2300 167 DNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~~~~~ 185 (221)
++.|++++.+.+.+.+.+.
T Consensus 87 ~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 87 KGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CcccHHHHHHHHHHHHHHh
Confidence 9999999999988876543
No 373
>PRK01889 GTPase RsgA; Reviewed
Probab=98.40 E-value=2e-06 Score=70.36 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=59.1
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCeEEEEecCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAE-SLGVEFFETSAKDNV 169 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 169 (221)
..++|.+++|+++..+-....+..++..+... +.+.+||+||+||.+... +....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997444445566666666554 788899999999965311 11122221 346789999999999
Q ss_pred CHHHHHHHHH
Q psy2300 170 NVKGVFERLV 179 (221)
Q Consensus 170 gi~~l~~~i~ 179 (221)
|+++|..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999988874
No 374
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.40 E-value=4e-07 Score=65.46 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--ccc----cceeeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFV----STVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 83 (221)
-.++|+|++|||||||+|.|....... +.. .-.-+|.....+..+... .++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 467999999999999999999874211 111 111223334444444443 48899996544
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.39 E-value=3.4e-06 Score=67.77 Aligned_cols=154 Identities=17% Similarity=0.167 Sum_probs=86.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------c-c-----------ccceeeeeEEEEEE-------------eC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS---------A-F-----------VSTVGIDFKVKTVF-------------RH 66 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~---------~-~-----------~~~~~~~~~~~~~~-------------~~ 66 (221)
.-.|+|+|++|+||||++..+....... . + ....+..+...... ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999876431100 0 0 00011111111000 01
Q ss_pred CeEEEEEEEeCCCccccccc----chhh--------ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEe
Q psy2300 67 DKRVKLQIWDTAGQERYRTI----TTAY--------YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~n 134 (221)
...+.+.++||+|....... ...+ -...+..++|+|++... ..+.+. ...... -.+--+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEE
Confidence 13367899999996432211 0111 13467889999998532 222221 111111 245688999
Q ss_pred CCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 135 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
|.|.... .-.+...+...++|+..++ +|++++++...=.+.+.+..
T Consensus 268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~~~~l 313 (318)
T PRK10416 268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEFVDAL 313 (318)
T ss_pred CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHHHHHH
Confidence 9995332 1234455566789998888 78899887665555555443
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=2.9e-06 Score=69.60 Aligned_cols=84 Identities=21% Similarity=0.359 Sum_probs=57.2
Q ss_pred ccCCc-EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHHhCC---eEEE
Q psy2300 91 YRGAM-GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGK----HLAESLGV---EFFE 162 (221)
Q Consensus 91 ~~~~d-~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~~---~~~~ 162 (221)
+...+ ++++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+... ....+... .+++..++ .++.
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 34455 999999998743 12344444432 36899999999999542 22233333 33445565 5899
Q ss_pred EecCCCCCHHHHHHHHHHH
Q psy2300 163 TSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~ 181 (221)
+||+++.|++++++.|.+.
T Consensus 139 vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998664
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.32 E-value=1.5e-05 Score=62.74 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=61.9
Q ss_pred EEEEEEEeCCCcccccccch-------hh-----ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCC
Q psy2300 69 RVKLQIWDTAGQERYRTITT-------AY-----YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~-------~~-----~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 136 (221)
++.+.++||+|......... .. -..+|.+++|+|++-.. ..+.. ...+.+. -.+.-+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~---~~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEA---VGLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhh---CCCCEEEEEcc
Confidence 36788999999654322211 11 12489999999997432 22222 1222221 23578899999
Q ss_pred CCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 137 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
|..... -.........++|+.+++ +|++++++..+=.+.+.+
T Consensus 228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~~~~~~~ 269 (272)
T TIGR00064 228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLAPFDADWFVE 269 (272)
T ss_pred CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCccCCHHHHHH
Confidence 974432 234444556688888888 788888776554444433
No 378
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.32 E-value=4.1e-06 Score=66.61 Aligned_cols=91 Identities=20% Similarity=0.156 Sum_probs=61.7
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecC
Q psy2300 87 TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAK 166 (221)
Q Consensus 87 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 166 (221)
....+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .+....+....+.+++.+|++
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~-~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~ 89 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENP-MIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAK 89 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCCh-hHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence 34467899999999999876543221 111222 2689999999999853211 112222233445678999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy2300 167 DNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~~~~~ 185 (221)
++.|++++.+.+.+.+.+.
T Consensus 90 ~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 90 KGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CcccHHHHHHHHHHHHHHH
Confidence 9999999999988876544
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=98.32 E-value=1.2e-06 Score=70.63 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=62.1
Q ss_pred EEEEEEeCCCcccccc-cc---hhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRT-IT---TAY--YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.++||+|...... ++ ..+ ....|.+++|+|+...... ......+... -..--+|+||.|....-.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~---~~~a~~f~~~---~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA---VEQAREFNEA---VGIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH---HHHHHHHHhc---CCCCEEEEeeecCCCCcc
Confidence 4688999999653221 11 111 2357889999998754321 1111222221 245678899999743322
Q ss_pred cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 144 ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.+...+...+.|+.+++ +|.+++++..+=.+.+.++.
T Consensus 297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~~l 333 (336)
T PRK14974 297 ----AALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVDKL 333 (336)
T ss_pred ----HHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHHHH
Confidence 23344455688988887 79999888766555555443
No 380
>KOG0459|consensus
Probab=98.31 E-value=7.2e-07 Score=71.88 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=99.2
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCC--CC---------------------------CccccceeeeeEEEEEEe
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDS--FT---------------------------SAFVSTVGIDFKVKTVFR 65 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~ 65 (221)
..+....+++.|+|+..+||||+-..+.... +. .......+.+...-...+
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 3344567999999999999999866654210 00 000011123333333334
Q ss_pred CCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh---hHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCC
Q psy2300 66 HDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE---SFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 66 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~ 141 (221)
.-...++++.|.||+..|...+..-..+||+.++|+++...+ .|+.--+......... ..-...|+++||+|-+..
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 444467999999999999988888889999999999985422 3332222222221111 124568999999997543
Q ss_pred cc--cC----HHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q psy2300 142 RV--IS----FERGKHLAESLG------VEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 142 ~~--~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 176 (221)
.. .. .+....|.+..+ ..++++|..+|.++.+...
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 21 11 122334444333 4589999999999988664
No 381
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.28 E-value=1.9e-06 Score=70.59 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFT----SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
.+|+|+|.+|+|||||+|+|+..... ....+.+++|.....+..+.. +.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 58999999999999999999975421 123344566666666655322 5699999953
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.28 E-value=1.4e-06 Score=71.54 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFT----SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
.+++|+|.+|+|||||||+|...... ....+.+|+|.....+..+.. ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 47999999999999999999864311 113344567777776666543 3699999953
No 383
>KOG1424|consensus
Probab=98.26 E-value=1.4e-06 Score=72.30 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=48.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
..+.|++||.||+||||+||.|.+.+. ..+..|+|.|....++.+.. .+.+.|+||-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~Kk-VsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKK-VSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCce-eeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 369999999999999999999999984 56778899998888887654 3678999993
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.26 E-value=1.5e-05 Score=66.23 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=70.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC----CCCCc------c-----------ccceeeeeEEEEEEeC-------------
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD----SFTSA------F-----------VSTVGIDFKVKTVFRH------------- 66 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~----~~~~~------~-----------~~~~~~~~~~~~~~~~------------- 66 (221)
...|+++|.+|+||||++.+|... ..... + ....++.+.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 467899999999999999988621 10000 0 0011111111110001
Q ss_pred CeEEEEEEEeCCCccccccc-c---hh--hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 67 DKRVKLQIWDTAGQERYRTI-T---TA--YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~-~---~~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
...+.+.|+||+|....... . .. .....+.+++|+|++-.....+ ....+.. .-.+--+|+||.|-..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~---~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKD---SVDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHh---ccCCcEEEEECccCCC
Confidence 12467899999995433211 1 11 1235788999999875432221 2222222 1356788999999743
Q ss_pred CcccCHHHHHHHHHHhCCeEEEEe
Q psy2300 141 ERVISFERGKHLAESLGVEFFETS 164 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~S 164 (221)
.- -.+.......+.|+.+++
T Consensus 254 rg----G~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 KG----GGALSAVAATKSPIIFIG 273 (429)
T ss_pred Cc----cHHhhhHHHHCCCeEEEc
Confidence 21 112333444566655443
No 385
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.25 E-value=1.4e-05 Score=62.87 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=69.9
Q ss_pred cccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEE
Q psy2300 84 RTITTAYYRGAMGFILMYDVTNEE-SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFE 162 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (221)
..+.+....+.|-+++|+++.+|+ +...+..++-..+.. +...+|++||+|+.+......++........+.+++.
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 344444556688899999988876 444555555555443 7888888999999765544334566677778999999
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q psy2300 163 TSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~~ 182 (221)
+|+++++|++++.+++...+
T Consensus 147 ~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 147 VSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred ecCcCcccHHHHHHHhcCCe
Confidence 99999999999988776543
No 386
>PRK12288 GTPase RsgA; Reviewed
Probab=98.24 E-value=2.4e-06 Score=69.44 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=36.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC-ccccc-----eeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTS-AFVST-----VGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
++|+|.+|+|||||||+|+...... ...+. .-+|....-+.+++.. .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7999999999999999999764211 11111 0123333333443332 389999976554
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.23 E-value=6.9e-06 Score=59.42 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998765
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=98.23 E-value=2.2e-06 Score=69.76 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=35.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccccee-------eeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG-------IDFKVKTVFRHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (221)
++|+|.+|+|||||||+|+...... .....+ +|.....+..++.. .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 7999999999999999999764211 111112 34444444444333 5899999754
No 389
>KOG0465|consensus
Probab=98.23 E-value=3.3e-06 Score=71.38 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=87.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC-C---C------------ccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSF-T---S------------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~-~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (221)
+..-+|.+.-+-.+||||+-.+.+...- . . ......+++.......+.+.++++.++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 3456789999999999999988654210 0 0 1112235556666666666788999999999998
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 142 (221)
|..-.+..++--|+.++|+++...-.-+....|.++ .++ +.|.+.++||+|...+.
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~ry---~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KRY---NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hhc---CCCeEEEEehhhhcCCC
Confidence 888788889999999999998876544555556554 333 89999999999986553
No 390
>PRK13695 putative NTPase; Provisional
Probab=98.20 E-value=6.2e-05 Score=55.30 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 125 DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 125 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.+.|++++.+|... .....+.....+..++.+ +.+|-+++.+.+.+.+
T Consensus 125 ~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 125 SEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred CCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 47899999998532 122334445556667766 4567778888777754
No 391
>KOG4273|consensus
Probab=98.16 E-value=4.1e-05 Score=58.28 Aligned_cols=158 Identities=21% Similarity=0.320 Sum_probs=98.0
Q ss_pred eEEEEEcCCCC--CHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEE----EEEEEeCCCcccccccchhhccCCc
Q psy2300 22 FKLLIIGNSSV--GKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV----KLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 22 ~~i~vvG~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
..++|+|..|+ ||-+|+.+|....|..+..+...+.++..++ +++.+ .+.+.-.. .+.+-. .........
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwti--d~kyysadi~lcishic-de~~lp-n~~~a~pl~ 80 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTI--DNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQ 80 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEe--cceeeecceeEEeeccc-chhccC-Cccccccee
Confidence 46789999999 9999999999988877666655555555555 33332 22222111 111111 112234567
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC---------------------------c------
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE---------------------------R------ 142 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~---------------------------~------ 142 (221)
++++|||.+....+..+..|+....... =-.++.++||.|.... .
T Consensus 81 a~vmvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete 158 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE 158 (418)
T ss_pred eEEEEEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence 8999999999988888888877543221 1234566788885210 0
Q ss_pred -----------ccCHHHHHHHHHHhCCeEEEEecCCC------------CCHHHHHHHHHHHHHHh
Q psy2300 143 -----------VISFERGKHLAESLGVEFFETSAKDN------------VNVKGVFERLVDIICDK 185 (221)
Q Consensus 143 -----------~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~i~~~~~~~ 185 (221)
-.......+|+..+++.+++.++.+. .|+..+|.++...+-..
T Consensus 159 gssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg 224 (418)
T KOG4273|consen 159 GSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG 224 (418)
T ss_pred cccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence 01122356778888899998888543 56777777766555433
No 392
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.12 E-value=6.2e-06 Score=64.01 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--cccc----ceeeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTS--AFVS----TVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 83 (221)
.++|+|.+|+|||||||+|....... +... ...+|.....+...+ . .++||||...+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCcccc
Confidence 68999999999999999999764211 1111 111333333343332 2 59999997544
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.09 E-value=6.6e-06 Score=64.65 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=38.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF------TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
..+++|.+|+|||||+|+|....- ......-.-+|.....+.++++++ +.||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 568999999999999999986421 111111122445555666654544 88999976554
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.02 E-value=3e-05 Score=56.60 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=61.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeC-CCc---------------------
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT-AGQ--------------------- 80 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~--------------------- 80 (221)
+|++.|++|+|||||+++++..-- ....+..| +......-++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999875431 11112222 22222223333444444454 221
Q ss_pred -ccccc----cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCC-CCCCCcccCHHHHHHHHH
Q psy2300 81 -ERYRT----ITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC-DMEDERVISFERGKHLAE 154 (221)
Q Consensus 81 -~~~~~----~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~ 154 (221)
+.+.. .....+..+| ++|+|=--+..+ ....|...+...-..+.|++.++-+. +. .....+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 11111 1111123455 666662211100 01123333333333478888888766 32 12344455
Q ss_pred HhCCeEEEEecCCCCCH
Q psy2300 155 SLGVEFFETSAKDNVNV 171 (221)
Q Consensus 155 ~~~~~~~~~Sa~~~~gi 171 (221)
..+..++.++..+..-+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 56788888877665544
No 395
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=3e-05 Score=71.35 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=62.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCc------cccceeeeeEEEEEEeCCeEEEEEEEeCCCcc--------cccccchh
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSA------FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE--------RYRTITTA 89 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 89 (221)
-+|+|++|+||||++..- +..|+-. .....+ |.+.- ..+.. .-.++||.|.. .....|..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 589999999999998643 2222211 001111 11111 22222 24588998821 22334443
Q ss_pred h---------ccCCcEEEEEEECCC-----hh-hHHH---HHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 90 Y---------YRGAMGFILMYDVTN-----EE-SFTS---IQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 90 ~---------~~~~d~vi~v~d~~~-----~~-s~~~---~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
+ .+..++||+.+|+.+ +. .... ++.-+.++.....-..|++|++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3 356899999999764 21 1122 22333344444456899999999999854
No 396
>KOG3859|consensus
Probab=98.01 E-value=2.2e-05 Score=60.65 Aligned_cols=119 Identities=22% Similarity=0.352 Sum_probs=71.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc----cceeeeeEEEEEEeCCeEEEEEEEeCCC-------cccccc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV----STVGIDFKVKTVFRHDKRVKLQIWDTAG-------QERYRT 85 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g-------~~~~~~ 85 (221)
..-..++|+.||..|.|||||+..|.+-.|..... |........+.+.-.+..+.+++.||.| .+.|..
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~ 117 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKP 117 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccch
Confidence 33467999999999999999999999987654322 2223223333333345567889999988 112221
Q ss_pred cc-------hhh---------------ccCCcEEEEEEECCChhhHHHHHH-HHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 86 IT-------TAY---------------YRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 86 ~~-------~~~---------------~~~~d~vi~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
+. +.| -...++++|.+..+. .++..+.- .+..+. ..+.+|-|+.|.|...
T Consensus 118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence 11 111 134677888887764 33444433 222222 2566777888998643
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=6.3e-05 Score=61.58 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--C-ccccceeeee------------------EEEEEE---------eCCeEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFT--S-AFVSTVGIDF------------------KVKTVF---------RHDKRVK 71 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~--~-~~~~~~~~~~------------------~~~~~~---------~~~~~~~ 71 (221)
-.++|+|++|+||||++.+|...... . ...-....+. ...... .......
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 46889999999999999998753210 0 0000011100 011110 0112346
Q ss_pred EEEEeCCCcccccccch---hhc---cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhCC-C-CCcEEEEEeCCCCCCCc
Q psy2300 72 LQIWDTAGQERYRTITT---AYY---RGAMGFILMYDVTNE-ESFTSIQDWITQIKTYSW-D-NAQVILVGNKCDMEDER 142 (221)
Q Consensus 72 ~~i~D~~g~~~~~~~~~---~~~---~~~d~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~-~-~~p~ivv~nK~Dl~~~~ 142 (221)
+.++||+|......... ..+ ....-.++|++++.. +.+..+..-+........ . ..+--+|+||.|-...
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~- 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN- 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence 88999999654332211 112 234456889988753 333333222222211000 0 0134678899996332
Q ss_pred ccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 143 VISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
.-.+..+....++++..++. |.+|.+
T Consensus 297 ---~G~~l~~~~~~~lPi~yvt~--Gq~VPe 322 (374)
T PRK14722 297 ---LGGVLDTVIRYKLPVHYVST--GQKVPE 322 (374)
T ss_pred ---ccHHHHHHHHHCcCeEEEec--CCCCCc
Confidence 23455666777877766654 555443
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00017 Score=61.27 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=75.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC------Cccccc-----------------eeeeeEEEEEE------e-CCeEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFT------SAFVST-----------------VGIDFKVKTVF------R-HDKRV 70 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~------~~~~~~-----------------~~~~~~~~~~~------~-~~~~~ 70 (221)
.-.|+|+|++|+||||++.+|...-.. .....+ .+..+....-. + ....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 357899999999999999887642100 000000 01111100000 0 01236
Q ss_pred EEEEEeCCCcccccccchh---hc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC
Q psy2300 71 KLQIWDTAGQERYRTITTA---YY--RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS 145 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~---~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~ 145 (221)
.+.|+||+|.......... .+ ......++|++..- +...+...+..+.. ..+.-+|+||.|... .
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG----R 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc----c
Confidence 7889999995432211000 01 11234667777653 23334444333332 356789999999733 2
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCCH-HHHH
Q psy2300 146 FERGKHLAESLGVEFFETSAKDNVNV-KGVF 175 (221)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~ 175 (221)
.-.........++++..++. |..+ +++.
T Consensus 500 lG~aLsv~~~~~LPI~yvt~--GQ~VPeDL~ 528 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVTD--GQRVPDDLH 528 (559)
T ss_pred hhHHHHHHHHhCCCEEEEeC--CCCchhhhh
Confidence 34566666777887776654 5565 3433
No 399
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.97 E-value=1.7e-05 Score=63.00 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCc-ccc-----ceeeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSA-FVS-----TVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 83 (221)
-.++++|++|+|||||+|.|.+...... ..+ ...++.....+..... ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 4689999999999999999998653221 111 1123333444444322 248999998655
No 400
>PRK00098 GTPase RsgA; Reviewed
Probab=97.96 E-value=2e-05 Score=63.05 Aligned_cols=58 Identities=22% Similarity=0.126 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCc-cccc-----eeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSA-FVST-----VGIDFKVKTVFRHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (221)
-.++|+|.+|+|||||+|.|.+...... ..+. ..++.....+..++. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 3589999999999999999987653211 1110 012333333333333 35899999654
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.88 E-value=0.00025 Score=51.94 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=46.2
Q ss_pred EEEEEEeCCCccccc----ccchhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYR----TITTAY--YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~----~~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
..+.++|++|..... .....+ ....+.+++|+|+..... ...+...+.... + ..-+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc-
Confidence 457889999964221 111111 134899999999865432 223333333322 2 467788999974432
Q ss_pred cCHHHHHHHHHHhCCeEEE
Q psy2300 144 ISFERGKHLAESLGVEFFE 162 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (221)
......+...++|+..
T Consensus 156 ---g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ---GAALSIRAVTGKPIKF 171 (173)
T ss_pred ---chhhhhHHHHCcCeEe
Confidence 2233356666776543
No 402
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=0.00015 Score=60.75 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=58.3
Q ss_pred EEEEEEeCCCccccc----ccchhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc
Q psy2300 70 VKLQIWDTAGQERYR----TITTAYYR---GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 142 (221)
+.+.|+||+|..... .....++. ...-+++|++++-. ...+......+.. -.+--+|+||.|-...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~----~~~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR----LPLDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC----CCCCEEEEeccccccc-
Confidence 568899999964332 11222333 23466788887532 1223333233221 1234688999996332
Q ss_pred ccCHHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHHHHHHHHHhh
Q psy2300 143 VISFERGKHLAESLGVEFFETSAKDNVNV-KGVFERLVDIICDKM 186 (221)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~i~~~~~~~~ 186 (221)
.-.+..+....++++..++. |.++ +++...=.+.+.+..
T Consensus 373 ---~G~i~~~~~~~~lPv~yit~--Gq~VpdDl~~a~~~~l~~~l 412 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLTN--GQRVPDDIKVANPEELVRLL 412 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEeC--CCCChhhhhhCCHHHHHHHH
Confidence 23566777778888776654 6665 555554444444443
No 403
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.84 E-value=9.1e-05 Score=43.20 Aligned_cols=44 Identities=27% Similarity=0.252 Sum_probs=28.8
Q ss_pred CCcEEEEEEECCC--hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCC
Q psy2300 93 GAMGFILMYDVTN--EESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 93 ~~d~vi~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 137 (221)
-.++++|++|++. +.+.++-..++..++... .+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 4689999999986 345666666777776654 5899999999998
No 404
>KOG2484|consensus
Probab=97.83 E-value=1.6e-05 Score=64.13 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=47.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (221)
.+.++++|+|.||+||||+||.|..... -....++|+|.....+..+. .+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccC---CceeccCCce
Confidence 5689999999999999999999998885 44567778887777776654 4789999994
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.82 E-value=0.00015 Score=60.65 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=52.0
Q ss_pred EEEEEEeCCCccccccc-ch---h--hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRTI-TT---A--YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~-~~---~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.|+||+|....... .. . ..-..+.+++|+|+.... +...+...+... -...-+|+||.|-....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~---v~i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNER---LGLTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhh---CCCCEEEEeCccCcccc-
Confidence 56889999995332211 11 1 123578899999987542 233333333322 13457779999963322
Q ss_pred cCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 144 ISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
-.+.......++|+.++.. |+.+++
T Consensus 256 ---G~~lsi~~~~~~PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIGV--GEKIDD 280 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEeC--CCChhh
Confidence 2255566667888776655 444443
No 406
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.77 E-value=0.00022 Score=50.97 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCC
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 137 (221)
.+.+.|+||+|.... ...++..+|.+++|....-.+.+.-++ . ..+ ..--++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k----~-~~~---~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK----A-GIM---EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh----h-hHh---hhcCEEEEeCCC
Confidence 367889999885422 234788999999998876333222221 1 111 344578899987
No 407
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.77 E-value=0.00037 Score=52.23 Aligned_cols=93 Identities=15% Similarity=0.043 Sum_probs=52.8
Q ss_pred EEEEEEeCCCccccccc----chhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRTI----TTAY--YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.++||+|....... ...+ ....+-+++|++++.... .+...... ... -.+--+|++|.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~~-~~~---~~~~~lIlTKlDet~~-- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALAF-YEA---FGIDGLILTKLDETAR-- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHHH-HHH---SSTCEEEEESTTSSST--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHHH-hhc---ccCceEEEEeecCCCC--
Confidence 45889999995533211 1111 125778999999886532 22222222 222 2344677999996332
Q ss_pred cCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 144 ISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
.-.+..++...+.|+-.++. |.+++++
T Consensus 156 --~G~~l~~~~~~~~Pi~~it~--Gq~V~Dl 182 (196)
T PF00448_consen 156 --LGALLSLAYESGLPISYITT--GQRVDDL 182 (196)
T ss_dssp --THHHHHHHHHHTSEEEEEES--SSSTTGE
T ss_pred --cccceeHHHHhCCCeEEEEC--CCChhcC
Confidence 23466667778888877664 5555443
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00079 Score=56.10 Aligned_cols=154 Identities=12% Similarity=0.139 Sum_probs=81.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---Cccc---c-----------------ceeeeeEEEEE-------EeCCeEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFT---SAFV---S-----------------TVGIDFKVKTV-------FRHDKRV 70 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~---~~~~---~-----------------~~~~~~~~~~~-------~~~~~~~ 70 (221)
.-.|+|+|++|+||||++.+|.+.... .... . ..+.......- ...-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 457999999999999999988653100 0000 0 00111100000 0011223
Q ss_pred EEEEEeCCCcccccc----cchhhc--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 71 KLQIWDTAGQERYRT----ITTAYY--RGAMGFILMYDVTN-EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~----~~~~~~--~~~d~vi~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
.+.++||+|...... ....+. ....-.++|+|++- ...+ .+++..+. .-.+--+|+||.|-...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~---~~~~~~f~----~~~~~~~I~TKlDEt~~-- 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL---DEVISAYQ----GHGIHGCIITKVDEAAS-- 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH---HHHHHHhc----CCCCCEEEEEeeeCCCC--
Confidence 578999999543211 111121 22446788899873 3333 33322222 13445778999996332
Q ss_pred cCHHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHHHHHHHHHhhc
Q psy2300 144 ISFERGKHLAESLGVEFFETSAKDNVNV-KGVFERLVDIICDKMS 187 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~i~~~~~~~~~ 187 (221)
.-.+..+....++++..++ +|.++ +++...=.+.+.+...
T Consensus 342 --~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll 382 (420)
T PRK14721 342 --LGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHRIF 382 (420)
T ss_pred --ccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHHHh
Confidence 2345566677788776665 46777 5655554555555443
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.76 E-value=0.00032 Score=58.77 Aligned_cols=86 Identities=13% Similarity=0.017 Sum_probs=48.3
Q ss_pred EEEEEEeCCCccccccc-----ch-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRTI-----TT-AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~-----~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
..+.++||+|....... .. ..+..+|.+++|+|++... +.......+... -...-+|+||.|....-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---VGIGGIIITKLDGTAKG- 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---CCCCEEEEecccCCCcc-
Confidence 36889999996543211 11 1234688999999987642 122222222221 12356788999963321
Q ss_pred cCHHHHHHHHHHhCCeEEEEec
Q psy2300 144 ISFERGKHLAESLGVEFFETSA 165 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa 165 (221)
-.+.......+.|+.+++.
T Consensus 249 ---G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEec
Confidence 2344555666777766654
No 410
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00021 Score=63.39 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccc--------------------eeeeeEEEEE-------EeCCeEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSA---FVST--------------------VGIDFKVKTV-------FRHDKRVK 71 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~---~~~~--------------------~~~~~~~~~~-------~~~~~~~~ 71 (221)
-.|+|+|++|+||||++.+|........ ...- .++......- .-....+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3689999999999999999875421000 0000 0110100000 00012246
Q ss_pred EEEEeCCCccccccc----chhh--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 72 LQIWDTAGQERYRTI----TTAY--YRGAMGFILMYDVTN-EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 72 ~~i~D~~g~~~~~~~----~~~~--~~~~d~vi~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
+.|+||+|....... .... ....+-+++|+|++- .+.+.++ ...+.... .-.+--+|+||.|-...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~-~~~i~glIlTKLDEt~~--- 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGA-GEDVDGCIITKLDEATH--- 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcc-cCCCCEEEEeccCCCCC---
Confidence 889999994332211 1111 223566889999874 2333333 22222211 01245788999996432
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHHHHHHHHHh
Q psy2300 145 SFERGKHLAESLGVEFFETSAKDNVNV-KGVFERLVDIICDK 185 (221)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~i~~~~~~~ 185 (221)
.-.+..+....++|+..++ +|.+| +++...=.+.+.+.
T Consensus 339 -~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ 377 (767)
T PRK14723 339 -LGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDR 377 (767)
T ss_pred -ccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHH
Confidence 2345556667788877665 47787 66655444444444
No 411
>KOG2485|consensus
Probab=97.74 E-value=3.1e-05 Score=60.77 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=41.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeeeeEEEE-EEeCCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT----SAFVSTVGIDFKVKT-VFRHDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~ 80 (221)
...+.+.|+|.||+|||||||.+.....- ......+|.+..+.. +.+. ..-.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 46799999999999999999987654321 234445566666555 2232 2234789999994
No 412
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00017 Score=59.20 Aligned_cols=141 Identities=19% Similarity=0.168 Sum_probs=74.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC----CCc-----------------cccceeeeeEEEEE---------EeC-CeE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSF----TSA-----------------FVSTVGIDFKVKTV---------FRH-DKR 69 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~----~~~-----------------~~~~~~~~~~~~~~---------~~~-~~~ 69 (221)
...|+|+|++|+||||++..|...-. ... +....+..+....- ... ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 35799999999999999998864210 000 00001111110000 000 012
Q ss_pred EEEEEEeCCCccccccc----chhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRTI----TTAYY--RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.|+||+|....... ...++ ...+.+++|+|++-.. ..+...+..+.. -..--+|+||.|-...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence 57889999996432211 11222 2356788999875321 223333333322 2446788999996442
Q ss_pred cCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 144 ISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
.-.+...+...++|+..++. |.++.+
T Consensus 393 --~G~iLni~~~~~lPIsyit~--GQ~VPe 418 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMTD--GQDVKK 418 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEeC--CCCCCc
Confidence 22445566667887766543 555433
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.73 E-value=0.00022 Score=59.64 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcccccc-cc---hhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRT-IT---TAY--YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.|+||+|...... +. ..+ .-..+.+++|+|+.... +.......+... -...-+|+||.|-.....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~---~~i~giIlTKlD~~~rgG 257 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA---LGLTGVILTKLDGDARGG 257 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh---CCCCEEEEeCccCccccc
Confidence 5688999999543211 11 111 12567789999986532 222222333321 123467789999633222
Q ss_pred cCHHHHHHHHHHhCCeEEEEec
Q psy2300 144 ISFERGKHLAESLGVEFFETSA 165 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa 165 (221)
.+.......++|+.++..
T Consensus 258 ----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 258 ----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ----HHHHHHHHHCcCEEEEeC
Confidence 245556667788776655
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=0.00016 Score=61.10 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--c-cccce--------------------eeeeEEEEEE-------eCCeEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTS--A-FVSTV--------------------GIDFKVKTVF-------RHDKRVK 71 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~--~-~~~~~--------------------~~~~~~~~~~-------~~~~~~~ 71 (221)
-.++|+|++|+||||++.+|....... . ..... +.......-. ..-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 468999999999999999987532100 0 00000 0000000000 0011235
Q ss_pred EEEEeCCCccccccc---chhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC
Q psy2300 72 LQIWDTAGQERYRTI---TTAYYRG---AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS 145 (221)
Q Consensus 72 ~~i~D~~g~~~~~~~---~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~ 145 (221)
+.++||+|....... ....+.. ..-.++|+|++-.. ..+.+... .+. ....--+|+||.|-.. .
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~---~f~-~~~~~g~IlTKlDet~----~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQ---AYR-GPGLAGCILTKLDEAA----S 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHH---Hhc-cCCCCEEEEeCCCCcc----c
Confidence 779999994322210 1111111 22377888886432 22222222 222 1334567789999633 2
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHHHHHHHHHhhc
Q psy2300 146 FERGKHLAESLGVEFFETSAKDNVNV-KGVFERLVDIICDKMS 187 (221)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~i~~~~~~~~~ 187 (221)
.-.+.......++++..++ +|.+| +++...=.+.+.+...
T Consensus 407 ~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll 447 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAF 447 (484)
T ss_pred chHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHh
Confidence 3345566677788876665 47788 6666554555555443
No 415
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.72 E-value=0.00041 Score=55.91 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=45.3
Q ss_pred EEEEEEeCCCcccccccchhhcc--------CCcEEEEEEECCChhhH-HHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYR--------GAMGFILMYDVTNEESF-TSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~vi~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
....++++.|-.....+...++. ..+.++.|+|+.+-... ........++ ...=+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi------~~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV------GYADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH------HhCCEEEEeccccCC
Confidence 34567888886544333333211 24779999998653211 1111111222 234588999999865
Q ss_pred CcccCHHHHHHHHHHhC--CeEEEEe
Q psy2300 141 ERVISFERGKHLAESLG--VEFFETS 164 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~--~~~~~~S 164 (221)
.. +......+.++ .+++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 34555555554 4566543
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.70 E-value=0.00037 Score=57.06 Aligned_cols=139 Identities=18% Similarity=0.194 Sum_probs=73.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC--C-CccccceeeeeE--------------------EEEE-------EeCCeEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSF--T-SAFVSTVGIDFK--------------------VKTV-------FRHDKRV 70 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~--~-~~~~~~~~~~~~--------------------~~~~-------~~~~~~~ 70 (221)
.-.|++||+.|+||||-+-+|...-. . .....-++++.+ ...- ...-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45689999999999998887765432 0 111111111111 1100 0011234
Q ss_pred EEEEEeCCCcccccccc----hhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 71 KLQIWDTAGQERYRTIT----TAYYR--GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~~----~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
.+.++||.|...+.... ..++. ...-+.+|++++-. ..++...+..+... ..-=+|+||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PIDGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----CcceeEEEcccccC----
Confidence 68899999976554322 22322 23456677777643 23444444443322 22356789999533
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 145 SFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
+.-.....+...+.|+..++ +|.+|
T Consensus 353 s~G~~~s~~~e~~~PV~YvT--~GQ~V 377 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT--NGQRV 377 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe--CCCCC
Confidence 23345555666677665543 45444
No 417
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.68 E-value=0.0014 Score=52.77 Aligned_cols=144 Identities=20% Similarity=0.204 Sum_probs=77.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC------ccccceeee---------eEEEEE-------Ee-------------CCe
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTS------AFVSTVGID---------FKVKTV-------FR-------------HDK 68 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~------~~~~~~~~~---------~~~~~~-------~~-------------~~~ 68 (221)
.+|-|.-|||||||++.++.+.--. +.....+++ .....+ ++ ...
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 5788999999999999998764200 000001111 111111 10 011
Q ss_pred EEEEEEEeCCCcccccccchhhc--------cCCcEEEEEEECCChhhHHH-HHH-HHHHHHhhCCCCCcEEEEEeCCCC
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYY--------RGAMGFILMYDVTNEESFTS-IQD-WITQIKTYSWDNAQVILVGNKCDM 138 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s~~~-~~~-~~~~l~~~~~~~~p~ivv~nK~Dl 138 (221)
.....++++.|-..-......+. -..|.++-|+|+.+-..... ... ...++ ..-=+|++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi------a~AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL------AFADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH------HhCcEEEEecccC
Confidence 13456778887443322222222 23577999999875322111 222 22222 3445899999999
Q ss_pred CCCcccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHH
Q psy2300 139 EDERVISFERGKHLAESLG--VEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~ 176 (221)
.++.. .+..+...+.++ .+++.++. .+.+..+++.
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 77653 455556666665 57787777 4444444443
No 418
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.63 E-value=0.00033 Score=49.48 Aligned_cols=107 Identities=16% Similarity=0.091 Sum_probs=61.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC
Q psy2300 25 LIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVT 104 (221)
Q Consensus 25 ~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~ 104 (221)
..-|..|+|||++.-.+...-. .......-.+.+.. ...-.+.+.++|+|+.. .......+..+|.++++++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4557889999998665543210 00001111111100 00011678899998743 333456788999999999875
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 105 NEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 105 ~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
..++..+...+..+.... ...++.+|+|+.+..
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 344555445555554322 356788999999753
No 419
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.0026 Score=52.64 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC--------CCcc-----------------ccceeeeeEEEEEE-------eCCe
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSF--------TSAF-----------------VSTVGIDFKVKTVF-------RHDK 68 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~--------~~~~-----------------~~~~~~~~~~~~~~-------~~~~ 68 (221)
.-.|+++|++|+||||.+.++...-. .... ....+..+...... ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45789999999999999988764210 0000 00011111111100 0112
Q ss_pred EEEEEEEeCCCccccccc----chhhccC--Cc-EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 69 RVKLQIWDTAGQERYRTI----TTAYYRG--AM-GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~----~~~~~~~--~d-~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
.+.+.++||+|....... ...++.. .+ -.++|+|++-.. ..+...+ ..+. .-.+--+|+||.|-...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~---~~~~-~~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIF---HQFS-PFSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHH---HHhc-CCCCCEEEEEeccCCCc
Confidence 356889999996533211 1112222 23 588999987642 3333333 3332 12356788999996332
Q ss_pred cccCHHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHHHHHHHHHhh
Q psy2300 142 RVISFERGKHLAESLGVEFFETSAKDNVNV-KGVFERLVDIICDKM 186 (221)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~i~~~~~~~~ 186 (221)
.-.+..+....++|+..++ +|.++ +++...=.+.+.+..
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~~l 367 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIKKI 367 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHh
Confidence 2344555666777776554 47777 555554444444443
No 420
>KOG0469|consensus
Probab=97.58 E-value=0.00039 Score=58.13 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=76.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC------------CC--CccccceeeeeEEEEE----------------EeCCeE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS------------FT--SAFVSTVGIDFKVKTV----------------FRHDKR 69 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~------------~~--~~~~~~~~~~~~~~~~----------------~~~~~~ 69 (221)
+.-++-|+.+...|||||-..|...- |. .......+++..+..+ ..++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 45567889999999999998876421 10 0111222333333222 124456
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCC
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 138 (221)
+.+.++|.||+-.|.+.....++-.|+.++|+|.-+.--.+.-..+.+.+.+ ...-++++||+|.
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence 7899999999999998888899999999999998764322222234444443 4555678999995
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.52 E-value=0.00062 Score=45.38 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=49.2
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 24 LLIIG-NSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 24 i~vvG-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
|+|.| ..|+||||+...+...-.. .+. ....+..+.. +.+.++|+|+.... .....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~------~~~--~vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR------RGK--RVLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh------CCC--cEEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56677 5689999987766543210 111 1111212222 67889999986432 23356788999999998
Q ss_pred CCChhhHHHHHHHHH
Q psy2300 103 VTNEESFTSIQDWIT 117 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~ 117 (221)
.+ ..++..+..++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 64 445555555554
No 422
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.00077 Score=47.20 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.-.+++.|++|+|||+|++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998765
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00041 Score=57.52 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CC-Cc--------------------cccceeeeeEEEE-E-----EeCCeEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS-FT-SA--------------------FVSTVGIDFKVKT-V-----FRHDKRVKLQ 73 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~-~~-~~--------------------~~~~~~~~~~~~~-~-----~~~~~~~~~~ 73 (221)
..++|+|++|+||||++.+|.... .. .. +....+....... . ......+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 468899999999999999887421 00 00 0001111111100 0 0011235678
Q ss_pred EEeCCCcccccc----cchhhcc-----CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 74 IWDTAGQERYRT----ITTAYYR-----GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 74 i~D~~g~~~~~~----~~~~~~~-----~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
++||+|...... .+..++. ...-.++|+|++-.. ..+........ .-.+--+|+||.|-...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~----~~~~~glIlTKLDEt~~--- 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYE----SLNYRRILLTKLDEADF--- 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhc----CCCCCEEEEEcccCCCC---
Confidence 999999642211 1111221 234678899987543 22222222221 12446788999996332
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 145 SFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
.-.+.......+.|+..++. |.++
T Consensus 375 -~G~il~i~~~~~lPI~ylt~--GQ~V 398 (432)
T PRK12724 375 -LGSFLELADTYSKSFTYLSV--GQEV 398 (432)
T ss_pred -ccHHHHHHHHHCCCEEEEec--CCCC
Confidence 22355566677887766654 4444
No 424
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.47 E-value=0.011 Score=42.76 Aligned_cols=147 Identities=10% Similarity=0.141 Sum_probs=96.3
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhc
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYY 91 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (221)
+....|-.+...|++||..+.++..|..++.... .. ....+... ....+ | .+.... -
T Consensus 6 p~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~--~~------~~l~Vh~a----~sLPL-----p--~e~~~l----R 62 (176)
T PF11111_consen 6 PFDKLPELNTATILLVGTEEALLQQLAEAMLEED--KE------FKLKVHLA----KSLPL-----P--SENNNL----R 62 (176)
T ss_pred ccccCCCcceeEEEEecccHHHHHHHHHHHHhhc--cc------eeEEEEEe----ccCCC-----c--ccccCC----C
Confidence 3445566778999999999999999999998632 11 11111111 01111 1 111111 2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
...|.|+|++|.....++..++.-+..+....--++ +.++++-....+.-.+...+..+++..++++++.+.-.+.++.
T Consensus 63 prIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~ 141 (176)
T PF11111_consen 63 PRIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR 141 (176)
T ss_pred ceeEEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence 457999999999999999888876666522221244 4444555554455567788999999999999999999888777
Q ss_pred HHHHHHHHHHH
Q psy2300 172 KGVFERLVDII 182 (221)
Q Consensus 172 ~~l~~~i~~~~ 182 (221)
..+-+.|.+.+
T Consensus 142 ~~lAqRLL~~l 152 (176)
T PF11111_consen 142 TSLAQRLLRML 152 (176)
T ss_pred HHHHHHHHHHH
Confidence 76666665544
No 425
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.45 E-value=0.00012 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999865
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.44 E-value=0.0014 Score=42.59 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=43.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc-chhhccCCcEEEEEEE
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI-TTAYYRGAMGFILMYD 102 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~vi~v~d 102 (221)
+++.|..|+||||+...+...-.. .+ +.. ..++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g--~~v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RG--KRV--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CC--CeE--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999998887654311 11 111 1111 6779999875432221 1345678899999998
Q ss_pred CCC
Q psy2300 103 VTN 105 (221)
Q Consensus 103 ~~~ 105 (221)
...
T Consensus 68 ~~~ 70 (99)
T cd01983 68 PEA 70 (99)
T ss_pred Cch
Confidence 764
No 427
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.43 E-value=0.00055 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.|++.|+.|+|||||++.+....
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998764
No 428
>PRK08118 topology modulation protein; Reviewed
Probab=97.38 E-value=0.00015 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
+|+|+|++|||||||.+.|....
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998653
No 429
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.38 E-value=0.00093 Score=44.84 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=57.8
Q ss_pred cCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh
Q psy2300 28 GNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE 107 (221)
Q Consensus 28 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~ 107 (221)
+..|+||||+...|...-.... +.+........... ..+.++|+|+... ......+..+|.++++++.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hH
Confidence 4567999998766653321110 11111111111111 1688999997543 22344678899999999764 45
Q ss_pred hHHHHHHHHHHHHhhCCC-CCcEEEEEeC
Q psy2300 108 SFTSIQDWITQIKTYSWD-NAQVILVGNK 135 (221)
Q Consensus 108 s~~~~~~~~~~l~~~~~~-~~p~ivv~nK 135 (221)
++..+..++..+...... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 667777777777665433 4567777775
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.35 E-value=0.00023 Score=42.59 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF 46 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~ 46 (221)
..+|.|+.|+|||||+.++..--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 489999999999999998865443
No 431
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.34 E-value=0.00099 Score=52.36 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC----C-----------------ccccceeeeeEEEEE---------Ee-CCeEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFT----S-----------------AFVSTVGIDFKVKTV---------FR-HDKRV 70 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~----~-----------------~~~~~~~~~~~~~~~---------~~-~~~~~ 70 (221)
-+++++|++|+||||++..+...-.. . .+....+..+....- .. ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999998877543100 0 000001111111000 00 11236
Q ss_pred EEEEEeCCCccccccc----chhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 71 KLQIWDTAGQERYRTI----TTAYY--RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
.+.++||+|....... +..++ ...+-+++|+|++-.. .++..++..+.. -.+--+|+||.|-...
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~~--- 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS--- 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCCC---
Confidence 7889999996532211 11122 2456789999976321 223333333322 3456788999996442
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 145 SFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
.-.+..++...+.|+..++. |.++.
T Consensus 227 -~G~~l~~~~~~~~Pi~~it~--Gq~vp 251 (270)
T PRK06731 227 -SGELLKIPAVSSAPIVLMTD--GQDVK 251 (270)
T ss_pred -ccHHHHHHHHHCcCEEEEeC--CCCCC
Confidence 22445566677887766653 55554
No 432
>PRK10646 ADP-binding protein; Provisional
Probab=97.33 E-value=0.0013 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998764
No 433
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.33 E-value=0.00019 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
|+++|+||||||||++.+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999998443
No 434
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.32 E-value=0.0025 Score=46.92 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=60.3
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHH
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFE 147 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 147 (221)
..+.+.++|+|+... ......+..+|.+++++..+. .+...+..++..+... +.++.+|+||.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 456889999997532 223445788999999998763 4566666776666654 5778999999997432 234
Q ss_pred HHHHHHHHhCCeEEE
Q psy2300 148 RGKHLAESLGVEFFE 162 (221)
Q Consensus 148 ~~~~~~~~~~~~~~~ 162 (221)
+..++.+..+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 566777777877653
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.32 E-value=0.0002 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+|+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 436
>KOG1534|consensus
Probab=97.32 E-value=0.00041 Score=51.66 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
+-+.|+|+.|+||||+.+.+..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 5678999999999999998764
No 437
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0011 Score=54.41 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=79.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC----CC------cc-----------ccceeeeeEEEEEE---------eC-CeE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSF----TS------AF-----------VSTVGIDFKVKTVF---------RH-DKR 69 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~----~~------~~-----------~~~~~~~~~~~~~~---------~~-~~~ 69 (221)
.-.++|+|+.|+||||++.++..... .. .+ ....+..+....-. .. ...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 44689999999999999998764210 00 00 00011111100000 00 023
Q ss_pred EEEEEEeCCCcccccccc----hhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRTIT----TAYY--RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~----~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.|+||+|........ ..+. ...+.+++|+++.. ...++...+.. +. .-.+--+|+||.|-...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~---f~-~l~i~glI~TKLDET~~-- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK---LA-EIPIDGFIITKMDETTR-- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh---cC-cCCCCEEEEEcccCCCC--
Confidence 578899999975332211 1122 23467777877632 22233332222 22 12345778999996432
Q ss_pred cCHHHHHHHHHHhCCeEEEEecCCCCCHHH-HHHHHHHHHHHh
Q psy2300 144 ISFERGKHLAESLGVEFFETSAKDNVNVKG-VFERLVDIICDK 185 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~-l~~~i~~~~~~~ 185 (221)
.-.+...+...+.|+..++. |.++.+ ++..=.+.+.+.
T Consensus 358 --~G~~Lsv~~~tglPIsylt~--GQ~VpdDi~~a~~~~Lv~~ 396 (407)
T PRK12726 358 --IGDLYTVMQETNLPVLYMTD--GQNITENIFRPKSRWLAER 396 (407)
T ss_pred --ccHHHHHHHHHCCCEEEEec--CCCCCcccCCCCHHHHHHH
Confidence 23455666777888776665 556553 444433344433
No 438
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.30 E-value=0.003 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999988764
No 439
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00021 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999877
No 440
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.24 E-value=0.00067 Score=46.67 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999988654
No 441
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00023 Score=52.06 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV 70 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (221)
.-++|.|++|+|||||+++|.... .-..+...+|.....-.+++..+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY 51 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDY 51 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCcee
Confidence 357899999999999999999876 22222223334444444455443
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00034 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
|+++|++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999988765
No 443
>KOG2423|consensus
Probab=97.20 E-value=0.00013 Score=59.16 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
+....|.|+|+|.||+||||+||.|-...+ -...|..|-+.-...+..- -++.++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkV-CkvAPIpGETKVWQYItLm---krIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKV-CKVAPIPGETKVWQYITLM---KRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhccc-ccccCCCCcchHHHHHHHH---hceeEecCCC
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.19 E-value=0.00023 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 445
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.16 E-value=0.00035 Score=51.91 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.-|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998753
No 446
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.16 E-value=0.00043 Score=42.56 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998865
No 447
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.15 E-value=0.00041 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999888765
No 448
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.14 E-value=0.0031 Score=52.81 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=32.0
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCC
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 137 (221)
.+....+++++++|+== .+.--+..++..++..+......+..+|+|-.|.+
T Consensus 150 EIlKaLyr~a~iLILDE-PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 150 EILKALYRGARLLILDE-PTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHhcCCCEEEEcC-CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 34455678888777611 11112345566666666666656888888888865
No 449
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.14 E-value=0.0017 Score=45.83 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=34.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEe--CCeEEEEEEEeCCCcc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR--HDKRVKLQIWDTAGQE 81 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~ 81 (221)
.--|++-|+-|||||||.+.+...--.....+++ |+....... ...-+++.+|-....+
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SP--TFtlv~~Y~~~~~~lyH~DlYRl~d~e 85 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSP--TFTLVEEYEEGRLPLYHFDLYRLSDPE 85 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHHcCCCCcccCC--CeeeehhhcCCCCcEEEEeeeccCChH
Confidence 3468999999999999999988665323333333 233333321 1122555566555433
No 450
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.11 E-value=0.007 Score=52.02 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=26.8
Q ss_pred chhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 7 TKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
..|.+.+....... --+++.||+||||||.++.|+...
T Consensus 32 ~~wl~~~~~~~~~~-~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 32 RSWLEEMFSGSSPK-RILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHHHHHHhccCCCc-ceEEEECCCCCCHHHHHHHHHHHh
Confidence 45666654433222 256789999999999999988653
No 451
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.09 E-value=0.0033 Score=49.81 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=59.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc----------------
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ---------------- 80 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------------- 80 (221)
+......++++|++|-|||+++++|....-+. .... . ..+.+.....|..
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34456789999999999999999999876322 1111 1 1123333333320
Q ss_pred --------ccccccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCC
Q psy2300 81 --------ERYRTITTAYYRGAMGFILMYDVTN---EESFTSIQDWITQIKTYS-WDNAQVILVGNKC 136 (221)
Q Consensus 81 --------~~~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~ 136 (221)
..........++...+=++++|=-+ ..+....+..++.++... .-..|+|.++++-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 1111222345677788888888332 123333344444443332 2378999998754
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.06 E-value=0.00068 Score=47.77 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 453
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.05 E-value=0.014 Score=42.60 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=51.6
Q ss_pred EEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHH
Q psy2300 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGK 150 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 150 (221)
.+.++|+|+.... .....+..+|.+|++++.+. .++..+..++..+... ....+.+|+|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 5889999875332 23445788999999998754 4455555666666553 234578899999864321 112233
Q ss_pred HHHHHhCCeEE
Q psy2300 151 HLAESLGVEFF 161 (221)
Q Consensus 151 ~~~~~~~~~~~ 161 (221)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44444566554
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.04 E-value=0.00069 Score=51.22 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
...-|+|+|++|||||||++.|....
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 44568899999999999999997643
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.04 E-value=0.00063 Score=47.22 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSF 46 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~ 46 (221)
-.++|+|++|+|||+++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999987764
No 456
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.03 E-value=0.00059 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998764
No 457
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.00 E-value=0.00079 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
|+++|++|||||||++-+.+-.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 7999999999999999887665
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.95 E-value=0.00099 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+....|+|+|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
No 459
>KOG1533|consensus
Probab=96.94 E-value=0.00088 Score=50.77 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=38.3
Q ss_pred EEEEEEeCCCccccc----ccch--hhccCCcEEEEEEEC------CChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCC
Q psy2300 70 VKLQIWDTAGQERYR----TITT--AYYRGAMGFILMYDV------TNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~----~~~~--~~~~~~d~vi~v~d~------~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 137 (221)
-.+.++|+||+-+.- .++. ..++.-|.-+.++.. ++|..| +..++..+.....-..|-|=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhH
Confidence 357799999965332 2221 123445554444443 356555 33344444333334788999999999
Q ss_pred CC
Q psy2300 138 ME 139 (221)
Q Consensus 138 l~ 139 (221)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 73
No 460
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.94 E-value=0.00072 Score=52.46 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
++++|+.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999874
No 461
>PRK04195 replication factor C large subunit; Provisional
Probab=96.93 E-value=0.014 Score=50.05 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.-.++|.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999998754
No 462
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0012 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|++|||||||++.+-+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 47999999999999999887655
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.92 E-value=0.00089 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.|+|+|+.|+|||||+..|.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987653
No 464
>PRK06217 hypothetical protein; Validated
Probab=96.91 E-value=0.00088 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 465
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.91 E-value=0.0008 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999887543
No 466
>PRK03839 putative kinase; Provisional
Probab=96.91 E-value=0.00085 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+|+|+|+|||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998765
No 467
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.91 E-value=0.0008 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|++|||||||++.|....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999987653
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.90 E-value=0.00091 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.|+|+|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997654
No 469
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.89 E-value=0.00091 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 470
>PRK01889 GTPase RsgA; Reviewed
Probab=96.87 E-value=0.0014 Score=53.85 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-+++|+|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999999754
No 471
>KOG0780|consensus
Probab=96.87 E-value=0.0013 Score=53.33 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=29.7
Q ss_pred CeEEEEEEEeCCCccc-----ccccchh-hccCCcEEEEEEECCChhhHHHHHH
Q psy2300 67 DKRVKLQIWDTAGQER-----YRTITTA-YYRGAMGFILMYDVTNEESFTSIQD 114 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~-----~~~~~~~-~~~~~d~vi~v~d~~~~~s~~~~~~ 114 (221)
.+++.+.|.||+|... +..+... -.-..|-+|+|.|++-...-+....
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 3457799999999432 2222111 1345899999999987654444333
No 472
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.87 E-value=0.003 Score=46.29 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=28.0
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
|++++|+|+.++.+..+ ..+...+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988643221 12222211 1113689999999999954
No 473
>PRK14530 adenylate kinase; Provisional
Probab=96.87 E-value=0.00096 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+|+|+|+|||||||+.+.|...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
No 474
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0011 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.86 E-value=0.001 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~ 42 (221)
-.++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999885
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.0041 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
|+|+|++|+||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887654
No 477
>PRK13949 shikimate kinase; Provisional
Probab=96.85 E-value=0.001 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+|+|+|++|||||||.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 478
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.85 E-value=0.0013 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFT 47 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~ 47 (221)
.++++|++|+|||||+|-+.+-..+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCC
Confidence 5899999999999999998876544
No 479
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.84 E-value=0.001 Score=44.47 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy2300 23 KLLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~ 42 (221)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999875
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.83 E-value=0.00099 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
|+|.|++|||||||++.|.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987653
No 481
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.001 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-++++|+.|+|||||++.+++-.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999843
No 482
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.81 E-value=0.0011 Score=49.17 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
-.|+|+|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999873
No 483
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.81 E-value=0.0011 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.|+|+|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47999999999999999998753
No 484
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.80 E-value=0.0012 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998764
No 485
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.80 E-value=0.0012 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.-.++|+|++|+|||||++.+++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999988754
No 486
>KOG3929|consensus
Probab=96.78 E-value=0.00063 Score=52.24 Aligned_cols=92 Identities=16% Similarity=0.288 Sum_probs=56.4
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCC-eEEEEEEEeCCCcccccccchhhc
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-KRVKLQIWDTAGQERYRTITTAYY 91 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~ 91 (221)
..+........|++.|..+ ||++|++.....- +...++...+|........+ ..--..+|+.+|......+....+
T Consensus 37 L~e~~~~~E~~I~~~Gn~~--~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPi 113 (363)
T KOG3929|consen 37 LAEIAEKFEFFIGSKGNGG--KTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPI 113 (363)
T ss_pred HHHhhccceeEEEEecCCc--eeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcc
Confidence 3444445678899999654 5899999887653 33456665555544433322 112367899999765544433333
Q ss_pred cC----CcEEEEEEECCChh
Q psy2300 92 RG----AMGFILMYDVTNEE 107 (221)
Q Consensus 92 ~~----~d~vi~v~d~~~~~ 107 (221)
.. .-.+|++.|.++++
T Consensus 114 t~~~l~~~slIL~LDls~p~ 133 (363)
T KOG3929|consen 114 TGDTLRTFSLILVLDLSKPN 133 (363)
T ss_pred cccchhhhhheeeeecCChH
Confidence 22 23578899999865
No 487
>KOG1424|consensus
Probab=96.77 E-value=0.0028 Score=53.22 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=53.0
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhH--HHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESF--TSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV 158 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 158 (221)
+.|+.+|+ .+..+|+||.++|+.+|--| .++..+...+. +.+..++++||.||....+ ...-..+....++
T Consensus 163 E~WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni 235 (562)
T KOG1424|consen 163 EIWRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNI 235 (562)
T ss_pred HHHHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCCHHH--HHHHHHHHHhcCc
Confidence 34555555 57889999999999997544 33444433332 3578999999999955322 1222234456679
Q ss_pred eEEEEecCC
Q psy2300 159 EFFETSAKD 167 (221)
Q Consensus 159 ~~~~~Sa~~ 167 (221)
++++.||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 999999887
No 488
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.77 E-value=0.018 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
-.|+|.|++||||||+++.|..
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999999953
No 489
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.76 E-value=0.0013 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 490
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.76 E-value=0.0015 Score=49.36 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
....|+|.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.76 E-value=0.0018 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 492
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.74 E-value=0.0014 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999764
No 493
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0034 Score=50.19 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=81.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC----CCCC-----------------ccccceeeeeEEEE-------EEe------
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD----SFTS-----------------AFVSTVGIDFKVKT-------VFR------ 65 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~----~~~~-----------------~~~~~~~~~~~~~~-------~~~------ 65 (221)
..+-|+|+|-.|+||||-|-+|... .+.. ......+..+-... +.+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 4788999999999999988876532 1100 00000111111100 000
Q ss_pred CCeEEEEEEEeCCCcccccccc-------hhhccC-----CcEEEEEEECCCh-hhHHHHHHHHHHHHhhCCCCCcEEEE
Q psy2300 66 HDKRVKLQIWDTAGQERYRTIT-------TAYYRG-----AMGFILMYDVTNE-ESFTSIQDWITQIKTYSWDNAQVILV 132 (221)
Q Consensus 66 ~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~-----~d~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv 132 (221)
...++.+.+.||+|.-...... ...+.. .+-+++|+|++-. +++..++.+-..+ .---+|
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-------~l~GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-------GLDGII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-------CCceEE
Confidence 1133668899999943221110 111222 3448888898865 4555554432222 234578
Q ss_pred EeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 133 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
++|.|-...-.+ +...+...++|+.++-. |+++++|...=.+.+++
T Consensus 291 lTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL~~Fd~~~fv~ 336 (340)
T COG0552 291 LTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDLRPFDAEWFVD 336 (340)
T ss_pred EEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhccccCHHHHHH
Confidence 999995322211 22345667888887765 77888876554444443
No 494
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.73 E-value=0.0015 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999988764
No 495
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0013 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.+++|++|||||||++.|-..
T Consensus 35 VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhh
Confidence 3599999999999999887544
No 496
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.72 E-value=0.0019 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|++|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 497
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.72 E-value=0.0015 Score=50.35 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
..++++|+|.+|||||+|+..++...
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46899999999999999999887543
No 498
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0017 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSF 46 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~ 46 (221)
++|+|+.|+|||||++.|++...
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEECCCCccHHHHHHHhhCccC
Confidence 68999999999999999998754
No 499
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0013 Score=49.74 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998754
No 500
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0019 Score=49.75 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999764
Done!