Query psy2300
Match_columns 221
No_of_seqs 154 out of 1899
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 21:13:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.4E-41 4.7E-46 257.5 18.9 167 20-186 12-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 9.5E-37 3.3E-41 229.6 24.2 173 17-189 4-176 (206)
3 3cpj_B GTP-binding protein YPT 100.0 4.8E-36 1.6E-40 228.6 20.2 172 17-188 9-180 (223)
4 2a5j_A RAS-related protein RAB 100.0 1.5E-35 5.3E-40 220.5 22.0 184 4-187 4-187 (191)
5 1zbd_A Rabphilin-3A; G protein 100.0 2.7E-35 9.2E-40 221.1 23.3 175 17-191 4-178 (203)
6 3tkl_A RAS-related protein RAB 100.0 5.5E-35 1.9E-39 218.0 24.0 174 15-188 10-183 (196)
7 2ew1_A RAS-related protein RAB 100.0 2.1E-35 7.2E-40 221.7 21.5 180 8-187 13-192 (201)
8 2fu5_C RAS-related protein RAB 100.0 1.6E-35 5.6E-40 218.6 19.9 173 18-190 5-177 (183)
9 2hup_A RAS-related protein RAB 100.0 3E-35 1E-39 220.8 20.9 178 10-187 18-196 (201)
10 2gf9_A RAS-related protein RAB 100.0 9.5E-35 3.2E-39 215.9 23.2 175 12-186 13-187 (189)
11 2oil_A CATX-8, RAS-related pro 100.0 9.9E-35 3.4E-39 216.4 22.0 180 8-187 12-191 (193)
12 3tw8_B RAS-related protein RAB 100.0 2.2E-34 7.5E-39 211.8 22.8 173 17-190 5-177 (181)
13 2o52_A RAS-related protein RAB 100.0 6.4E-35 2.2E-39 218.8 20.2 180 8-187 12-191 (200)
14 3dz8_A RAS-related protein RAB 100.0 4.6E-36 1.6E-40 223.4 13.6 178 10-187 12-189 (191)
15 2bov_A RAla, RAS-related prote 100.0 1.6E-34 5.4E-39 217.1 21.9 169 17-186 10-179 (206)
16 2bme_A RAB4A, RAS-related prot 100.0 2E-34 6.9E-39 213.2 21.5 172 17-188 6-177 (186)
17 1z0f_A RAB14, member RAS oncog 100.0 2.3E-34 7.8E-39 211.4 21.2 169 16-184 10-178 (179)
18 3bc1_A RAS-related protein RAB 100.0 4.1E-34 1.4E-38 212.6 21.6 176 13-188 3-189 (195)
19 2il1_A RAB12; G-protein, GDP, 100.0 1.4E-34 4.7E-39 215.7 18.6 173 13-185 18-191 (192)
20 1z08_A RAS-related protein RAB 100.0 1.8E-34 6.2E-39 210.3 18.8 167 18-184 3-169 (170)
21 2efe_B Small GTP-binding prote 100.0 6.5E-34 2.2E-38 209.5 21.8 168 18-185 9-176 (181)
22 1vg8_A RAS-related protein RAB 100.0 1.6E-34 5.6E-39 217.3 19.0 169 18-187 5-178 (207)
23 1g16_A RAS-related protein SEC 100.0 5.9E-34 2E-38 207.5 20.8 166 20-186 2-167 (170)
24 2g6b_A RAS-related protein RAB 100.0 1.2E-33 4.2E-38 207.8 22.4 171 16-186 5-176 (180)
25 1z0j_A RAB-22, RAS-related pro 100.0 1.4E-33 4.8E-38 205.5 22.1 164 19-182 4-167 (170)
26 2fg5_A RAB-22B, RAS-related pr 100.0 3.5E-34 1.2E-38 213.4 18.8 169 16-184 18-186 (192)
27 1r2q_A RAS-related protein RAB 100.0 9.5E-34 3.2E-38 206.3 20.6 164 19-182 4-167 (170)
28 3kkq_A RAS-related protein M-R 100.0 1.9E-33 6.6E-38 207.5 22.0 168 16-184 13-182 (183)
29 1ek0_A Protein (GTP-binding pr 100.0 6.7E-34 2.3E-38 207.1 19.0 163 20-182 2-167 (170)
30 2f7s_A C25KG, RAS-related prot 100.0 3.5E-34 1.2E-38 217.2 18.1 181 10-190 14-205 (217)
31 3cph_A RAS-related protein SEC 100.0 2.9E-33 9.9E-38 211.3 23.0 173 14-187 13-185 (213)
32 3t5g_A GTP-binding protein RHE 100.0 2.1E-33 7E-38 207.0 21.5 168 18-186 3-171 (181)
33 3q3j_B RHO-related GTP-binding 100.0 5.9E-34 2E-38 215.8 18.9 178 8-187 14-206 (214)
34 1z2a_A RAS-related protein RAB 100.0 9.6E-34 3.3E-38 206.0 19.3 165 19-184 3-167 (168)
35 2fn4_A P23, RAS-related protei 100.0 2.6E-33 9.1E-38 206.0 21.5 170 17-187 5-175 (181)
36 2p5s_A RAS and EF-hand domain 100.0 6.5E-34 2.2E-38 213.1 17.5 171 14-184 21-197 (199)
37 3cbq_A GTP-binding protein REM 100.0 1.5E-33 5.2E-38 210.6 19.4 173 14-186 16-190 (195)
38 2nzj_A GTP-binding protein REM 100.0 4.9E-33 1.7E-37 203.6 21.5 168 19-187 2-172 (175)
39 3oes_A GTPase rhebl1; small GT 100.0 1.2E-33 4.2E-38 211.9 18.3 176 11-187 14-190 (201)
40 3q85_A GTP-binding protein REM 100.0 3.3E-33 1.1E-37 203.5 19.8 165 21-185 2-168 (169)
41 1x3s_A RAS-related protein RAB 100.0 7.6E-33 2.6E-37 206.1 22.1 167 19-186 13-180 (195)
42 2hxs_A RAB-26, RAS-related pro 100.0 1.1E-33 3.7E-38 207.8 17.2 167 19-185 4-174 (178)
43 1z06_A RAS-related protein RAB 100.0 2.8E-33 9.5E-38 207.9 19.5 169 15-183 14-187 (189)
44 1wms_A RAB-9, RAB9, RAS-relate 100.0 8.1E-33 2.8E-37 202.9 21.6 166 18-184 4-174 (177)
45 3c5c_A RAS-like protein 12; GD 100.0 2.5E-33 8.7E-38 208.0 18.9 165 18-184 18-186 (187)
46 3ihw_A Centg3; RAS, centaurin, 100.0 1E-32 3.5E-37 204.2 22.0 168 12-186 11-182 (184)
47 2y8e_A RAB-protein 6, GH09086P 100.0 2.9E-33 1E-37 205.5 18.8 164 20-183 13-176 (179)
48 3clv_A RAB5 protein, putative; 100.0 1.9E-32 6.6E-37 205.2 23.2 166 18-186 4-206 (208)
49 4dsu_A GTPase KRAS, isoform 2B 100.0 2.5E-32 8.6E-37 202.2 23.2 168 19-188 2-170 (189)
50 2atx_A Small GTP binding prote 100.0 8.9E-33 3E-37 205.9 20.7 170 12-183 9-192 (194)
51 3q72_A GTP-binding protein RAD 100.0 9.4E-33 3.2E-37 200.6 20.2 163 21-185 2-165 (166)
52 3reg_A RHO-like small GTPase; 100.0 1.4E-32 4.8E-37 204.9 21.6 168 17-186 19-190 (194)
53 4djt_A GTP-binding nuclear pro 100.0 4.3E-33 1.5E-37 211.4 18.0 176 18-193 8-184 (218)
54 2j0v_A RAC-like GTP-binding pr 100.0 4.4E-33 1.5E-37 210.4 18.0 167 18-186 6-182 (212)
55 1ky3_A GTP-binding protein YPT 100.0 8.4E-33 2.9E-37 203.5 18.4 169 18-186 5-180 (182)
56 2gf0_A GTP-binding protein DI- 100.0 5.7E-33 2E-37 207.5 17.7 166 19-186 6-173 (199)
57 2q3h_A RAS homolog gene family 100.0 2.7E-32 9.3E-37 204.4 21.3 174 12-187 11-198 (201)
58 1u8z_A RAS-related protein RAL 100.0 1.6E-32 5.4E-37 199.3 19.3 164 20-184 3-167 (168)
59 1c1y_A RAS-related protein RAP 100.0 1.2E-32 4.2E-37 199.9 18.5 162 21-183 3-166 (167)
60 2a9k_A RAS-related protein RAL 100.0 2.4E-32 8.3E-37 201.9 20.1 168 19-187 16-184 (187)
61 2atv_A RERG, RAS-like estrogen 100.0 3.1E-32 1.1E-36 203.4 19.6 168 17-186 24-193 (196)
62 1kao_A RAP2A; GTP-binding prot 100.0 2.5E-32 8.6E-37 198.0 18.6 163 21-184 3-166 (167)
63 2g3y_A GTP-binding protein GEM 100.0 3.9E-32 1.3E-36 205.1 20.2 171 16-186 32-205 (211)
64 1m7b_A RND3/RHOE small GTP-bin 100.0 2.1E-32 7.1E-37 202.4 18.3 165 18-184 4-183 (184)
65 2iwr_A Centaurin gamma 1; ANK 100.0 5.9E-32 2E-36 198.6 20.4 162 19-187 5-172 (178)
66 2yc2_C IFT27, small RAB-relate 100.0 4.1E-33 1.4E-37 209.6 14.5 169 19-187 18-195 (208)
67 1gwn_A RHO-related GTP-binding 100.0 4E-32 1.4E-36 204.4 18.6 165 18-184 25-204 (205)
68 3l0i_B RAS-related protein RAB 100.0 1E-34 3.4E-39 217.5 3.7 169 17-185 29-197 (199)
69 3gj0_A GTP-binding nuclear pro 100.0 1E-32 3.6E-37 209.8 14.9 172 14-188 8-179 (221)
70 3con_A GTPase NRAS; structural 100.0 4.9E-31 1.7E-35 195.8 22.8 167 19-187 19-186 (190)
71 2gco_A H9, RHO-related GTP-bin 100.0 3E-31 1E-35 198.9 21.7 164 19-184 23-200 (201)
72 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.7E-31 5.7E-36 197.3 19.4 163 20-184 4-180 (186)
73 2j1l_A RHO-related GTP-binding 100.0 1.7E-31 5.8E-36 202.2 19.2 166 19-186 32-211 (214)
74 2erx_A GTP-binding protein DI- 100.0 5.9E-32 2E-36 197.1 15.9 163 20-183 2-166 (172)
75 2fv8_A H6, RHO-related GTP-bin 100.0 4.8E-31 1.7E-35 198.7 20.8 166 19-186 23-202 (207)
76 2ce2_X GTPase HRAS; signaling 100.0 9.7E-31 3.3E-35 189.3 21.3 162 21-184 3-165 (166)
77 3t1o_A Gliding protein MGLA; G 100.0 5.3E-32 1.8E-36 201.8 14.5 167 17-187 10-195 (198)
78 4bas_A ADP-ribosylation factor 100.0 2.1E-31 7.1E-36 199.0 17.0 169 12-186 8-191 (199)
79 3bwd_D RAC-like GTP-binding pr 100.0 4.6E-32 1.6E-36 199.8 12.7 163 19-183 6-180 (182)
80 2cjw_A GTP-binding protein GEM 100.0 1.5E-30 5.2E-35 193.8 21.0 167 19-186 4-174 (192)
81 4gzl_A RAS-related C3 botulinu 100.0 5.2E-31 1.8E-35 198.1 17.5 162 19-182 28-203 (204)
82 2f9l_A RAB11B, member RAS onco 100.0 7.7E-30 2.6E-34 190.9 23.2 168 19-186 3-170 (199)
83 2h57_A ADP-ribosylation factor 100.0 2.3E-30 7.9E-35 192.3 17.9 173 6-184 6-187 (190)
84 2h17_A ADP-ribosylation factor 100.0 6.9E-31 2.4E-35 193.7 14.0 173 2-181 2-180 (181)
85 1zd9_A ADP-ribosylation factor 100.0 4.9E-31 1.7E-35 195.7 12.3 167 12-184 13-185 (188)
86 1upt_A ARL1, ADP-ribosylation 100.0 2.7E-30 9.2E-35 188.3 15.4 159 19-184 5-169 (171)
87 1oix_A RAS-related protein RAB 100.0 4.5E-29 1.5E-33 185.7 21.5 168 15-182 23-190 (191)
88 1r8s_A ADP-ribosylation factor 100.0 8.9E-31 3E-35 189.7 11.0 156 22-184 1-162 (164)
89 1f6b_A SAR1; gtpases, N-termin 100.0 7E-30 2.4E-34 191.1 15.9 156 19-181 23-196 (198)
90 1ksh_A ARF-like protein 2; sma 100.0 2.1E-29 7.1E-34 186.4 17.5 161 19-186 16-182 (186)
91 1m2o_B GTP-binding protein SAR 100.0 2.1E-29 7.2E-34 187.3 17.6 155 20-181 22-189 (190)
92 2b6h_A ADP-ribosylation factor 100.0 2.6E-30 8.8E-35 192.6 11.5 158 19-183 27-190 (192)
93 3llu_A RAS-related GTP-binding 100.0 7.1E-30 2.4E-34 190.7 13.5 171 7-182 6-195 (196)
94 1zj6_A ADP-ribosylation factor 100.0 2.7E-29 9.3E-34 186.0 16.3 158 19-183 14-177 (187)
95 2x77_A ADP-ribosylation factor 100.0 5.4E-30 1.8E-34 190.1 11.8 161 19-186 20-186 (189)
96 1fzq_A ADP-ribosylation factor 100.0 3E-29 1E-33 185.0 15.2 160 19-185 14-179 (181)
97 2wkq_A NPH1-1, RAS-related C3 100.0 2E-28 6.9E-33 196.6 19.9 164 19-184 153-330 (332)
98 2zej_A Dardarin, leucine-rich 100.0 5.8E-30 2E-34 189.3 9.9 164 21-185 2-179 (184)
99 1moz_A ARL1, ADP-ribosylation 100.0 7.8E-29 2.7E-33 182.6 14.9 160 19-185 16-181 (183)
100 3th5_A RAS-related C3 botulinu 99.9 2.7E-31 9.4E-36 199.5 0.0 162 19-182 28-203 (204)
101 3c5h_A Glucocorticoid receptor 100.0 4.3E-29 1.5E-33 193.9 7.5 167 15-183 13-254 (255)
102 2qu8_A Putative nucleolar GTP- 100.0 2.8E-27 9.7E-32 180.6 16.9 166 19-187 27-208 (228)
103 2wji_A Ferrous iron transport 100.0 8.7E-28 3E-32 174.6 13.2 153 21-182 3-163 (165)
104 2lkc_A Translation initiation 100.0 4.5E-27 1.5E-31 172.3 15.9 160 19-187 6-174 (178)
105 3o47_A ADP-ribosylation factor 99.9 4.5E-28 1.5E-32 194.5 10.3 158 20-184 164-327 (329)
106 2fh5_B SR-beta, signal recogni 99.9 7.8E-27 2.7E-31 176.3 16.0 160 19-181 5-213 (214)
107 1svi_A GTP-binding protein YSX 99.9 2.7E-27 9.4E-32 176.1 13.1 163 13-182 15-193 (195)
108 3lvq_E ARF-GAP with SH3 domain 99.9 1E-27 3.4E-32 202.7 11.9 162 18-186 319-486 (497)
109 3r7w_A Gtpase1, GTP-binding pr 99.9 1.5E-26 5E-31 184.1 15.3 159 20-182 2-179 (307)
110 2wjg_A FEOB, ferrous iron tran 99.9 1.6E-26 5.6E-31 171.0 12.1 158 20-186 6-171 (188)
111 2cxx_A Probable GTP-binding pr 99.9 9.5E-27 3.3E-31 172.3 10.5 157 22-187 2-187 (190)
112 3iev_A GTP-binding protein ERA 99.9 5.9E-26 2E-30 180.6 14.8 164 16-183 5-181 (308)
113 3a1s_A Iron(II) transport prot 99.9 8.2E-26 2.8E-30 175.5 14.6 156 19-183 3-166 (258)
114 3dpu_A RAB family protein; roc 99.9 8.3E-27 2.8E-31 198.5 9.0 165 17-185 37-209 (535)
115 2dyk_A GTP-binding protein; GT 99.9 6.6E-26 2.3E-30 163.4 12.2 150 22-182 2-160 (161)
116 3r7w_B Gtpase2, GTP-binding pr 99.9 5.1E-27 1.7E-31 185.7 6.4 156 23-185 1-175 (331)
117 3pqc_A Probable GTP-binding pr 99.9 8.8E-26 3E-30 167.7 12.8 164 13-184 15-194 (195)
118 2gj8_A MNME, tRNA modification 99.9 2.9E-26 9.9E-31 167.7 9.3 153 20-182 3-164 (172)
119 3b1v_A Ferrous iron uptake tra 99.9 3.4E-26 1.1E-30 178.7 9.9 153 20-182 2-162 (272)
120 4dhe_A Probable GTP-binding pr 99.9 7.9E-26 2.7E-30 171.8 11.4 170 13-186 21-213 (223)
121 3iby_A Ferrous iron transport 99.9 9.3E-26 3.2E-30 174.9 9.1 151 22-181 2-164 (256)
122 3k53_A Ferrous iron transport 99.9 9E-25 3.1E-29 171.0 12.0 157 21-185 3-167 (271)
123 3i8s_A Ferrous iron transport 99.9 3.6E-25 1.2E-29 173.4 8.4 154 21-183 3-168 (274)
124 1nrj_B SR-beta, signal recogni 99.9 2.8E-25 9.5E-30 168.2 6.4 146 16-170 7-170 (218)
125 2hjg_A GTP-binding protein ENG 99.9 4.9E-24 1.7E-28 177.2 12.5 161 19-185 173-350 (436)
126 3gee_A MNME, tRNA modification 99.9 4E-24 1.4E-28 178.6 11.9 157 20-183 232-397 (476)
127 2e87_A Hypothetical protein PH 99.9 8.5E-23 2.9E-27 165.7 17.3 162 19-185 165-337 (357)
128 1wf3_A GTP-binding protein; GT 99.9 7.5E-24 2.6E-28 167.8 10.8 156 20-182 6-171 (301)
129 3qq5_A Small GTP-binding prote 99.9 1.1E-24 3.8E-29 179.2 6.3 165 12-185 25-197 (423)
130 4dcu_A GTP-binding protein ENG 99.9 1.3E-23 4.5E-28 175.6 12.7 162 19-186 193-371 (456)
131 1lnz_A SPO0B-associated GTP-bi 99.9 8.5E-24 2.9E-28 169.8 9.6 159 22-185 159-331 (342)
132 3sjy_A Translation initiation 99.9 2.3E-22 7.8E-27 165.6 16.5 163 17-182 4-190 (403)
133 1s0u_A EIF-2-gamma, translatio 99.9 4.5E-22 1.5E-26 164.1 17.4 158 19-182 6-196 (408)
134 1cip_A Protein (guanine nucleo 99.9 1.5E-22 5E-27 163.2 12.6 119 69-187 192-347 (353)
135 3lxx_A GTPase IMAP family memb 99.9 2.7E-22 9.2E-27 154.1 12.9 167 14-184 22-214 (239)
136 1xzp_A Probable tRNA modificat 99.9 1.5E-22 5E-27 169.3 12.2 153 21-184 243-405 (482)
137 1mky_A Probable GTP-binding pr 99.9 1.1E-22 3.7E-27 169.2 11.2 153 22-185 2-167 (439)
138 3cb4_D GTP-binding protein LEP 99.9 2.4E-22 8.3E-27 171.6 13.5 157 20-182 3-180 (599)
139 1kk1_A EIF2gamma; initiation o 99.9 8.8E-22 3E-26 162.5 15.9 159 18-182 7-198 (410)
140 1wb1_A Translation elongation 99.9 5.4E-22 1.8E-26 166.5 14.4 155 20-183 18-188 (482)
141 1ega_A Protein (GTP-binding pr 99.9 2.2E-22 7.4E-27 159.5 11.3 157 20-182 7-173 (301)
142 2hjg_A GTP-binding protein ENG 99.9 2.2E-23 7.4E-28 173.3 5.5 152 22-183 4-164 (436)
143 2qtf_A Protein HFLX, GTP-bindi 99.9 2.3E-21 7.9E-26 157.0 16.8 161 23-186 181-356 (364)
144 2ywe_A GTP-binding protein LEP 99.9 1.1E-21 3.6E-26 167.5 15.4 159 19-183 4-183 (600)
145 3p26_A Elongation factor 1 alp 99.9 3.2E-22 1.1E-26 168.2 10.6 154 19-174 31-228 (483)
146 3j2k_7 ERF3, eukaryotic polype 99.9 3E-21 1E-25 160.3 15.5 158 16-176 12-217 (439)
147 2xtp_A GTPase IMAP family memb 99.9 4.9E-22 1.7E-26 154.4 9.8 165 17-185 18-209 (260)
148 3lxw_A GTPase IMAP family memb 99.9 1.3E-21 4.6E-26 150.9 12.0 167 19-185 19-209 (247)
149 3ohm_A Guanine nucleotide-bind 99.9 1.1E-21 3.7E-26 156.0 11.6 120 69-188 166-322 (327)
150 3geh_A MNME, tRNA modification 99.9 3.8E-22 1.3E-26 166.1 9.3 154 20-185 223-385 (462)
151 3izy_P Translation initiation 99.9 1.1E-23 3.9E-28 177.4 -1.0 159 20-183 3-167 (537)
152 3t5d_A Septin-7; GTP-binding p 99.9 5.2E-22 1.8E-26 155.5 8.4 160 19-182 6-202 (274)
153 1mky_A Probable GTP-binding pr 99.9 1.4E-20 4.7E-25 156.6 17.3 161 19-185 178-356 (439)
154 1zcb_A G alpha I/13; GTP-bindi 99.9 2.5E-21 8.6E-26 156.5 12.3 119 69-187 200-356 (362)
155 2elf_A Protein translation elo 99.9 1.1E-21 3.7E-26 159.4 10.2 147 23-185 23-181 (370)
156 2c78_A Elongation factor TU-A; 99.9 7.3E-22 2.5E-26 162.7 8.4 148 19-170 9-180 (405)
157 2ged_A SR-beta, signal recogni 99.9 1.6E-21 5.4E-26 144.7 9.0 118 17-143 44-173 (193)
158 1d2e_A Elongation factor TU (E 99.9 1.6E-21 5.4E-26 160.2 9.8 159 20-182 2-193 (397)
159 3tr5_A RF-3, peptide chain rel 99.9 2.5E-21 8.5E-26 163.6 10.8 118 20-141 12-149 (528)
160 2qag_A Septin-2, protein NEDD5 99.9 7.3E-22 2.5E-26 160.1 7.2 167 18-190 34-239 (361)
161 1g7s_A Translation initiation 99.8 1.3E-20 4.5E-25 161.0 14.2 160 20-186 4-220 (594)
162 1jny_A EF-1-alpha, elongation 99.8 1.3E-21 4.6E-26 162.4 7.7 155 19-176 4-205 (435)
163 1zun_B Sulfate adenylate trans 99.8 7.7E-21 2.6E-25 157.8 12.3 157 17-176 20-216 (434)
164 1r5b_A Eukaryotic peptide chai 99.8 8.4E-22 2.9E-26 164.8 5.3 159 17-175 39-243 (467)
165 2xtz_A Guanine nucleotide-bind 99.8 2E-20 6.9E-25 150.7 12.8 121 68-188 181-349 (354)
166 4dcu_A GTP-binding protein ENG 99.8 1.1E-21 3.8E-26 163.9 5.2 154 20-183 22-184 (456)
167 3izq_1 HBS1P, elongation facto 99.8 2.1E-21 7.1E-26 166.8 6.1 154 19-174 165-362 (611)
168 4fid_A G protein alpha subunit 99.8 1.7E-20 5.9E-25 149.6 9.9 117 68-184 159-328 (340)
169 1zo1_I IF2, translation initia 99.8 4.7E-22 1.6E-26 166.3 0.5 152 20-180 3-163 (501)
170 3avx_A Elongation factor TS, e 99.8 1.3E-20 4.4E-25 168.5 9.5 160 18-181 293-483 (1289)
171 2aka_B Dynamin-1; fusion prote 99.8 4.2E-21 1.4E-25 152.0 4.4 162 17-181 22-250 (299)
172 1pui_A ENGB, probable GTP-bind 99.8 9.4E-20 3.2E-24 136.9 11.1 162 16-184 21-199 (210)
173 1f60_A Elongation factor EEF1A 99.8 1.8E-20 6E-25 156.5 7.3 152 20-174 6-202 (458)
174 3mca_A HBS1, elongation factor 99.8 2.8E-20 9.4E-25 159.4 5.8 154 16-172 172-371 (592)
175 1udx_A The GTP-binding protein 99.8 9E-19 3.1E-23 143.7 13.6 161 23-187 159-328 (416)
176 2dy1_A Elongation factor G; tr 99.8 6.3E-19 2.2E-23 153.1 13.1 118 18-139 6-139 (665)
177 2h5e_A Peptide chain release f 99.8 2.1E-18 7.1E-23 146.0 13.7 118 20-141 12-149 (529)
178 3def_A T7I23.11 protein; chlor 99.8 1.7E-18 5.9E-23 134.6 12.0 125 19-146 34-171 (262)
179 1dar_A EF-G, elongation factor 99.8 1.2E-18 4E-23 151.9 11.4 118 19-140 10-143 (691)
180 2j69_A Bacterial dynamin-like 99.8 3.1E-18 1.1E-22 149.3 13.4 164 19-185 67-326 (695)
181 1h65_A Chloroplast outer envel 99.8 6.4E-18 2.2E-22 131.9 12.1 126 19-146 37-174 (270)
182 2qnr_A Septin-2, protein NEDD5 99.8 6.4E-19 2.2E-23 139.5 6.0 166 18-188 15-218 (301)
183 1jwy_B Dynamin A GTPase domain 99.8 3.6E-18 1.2E-22 136.1 9.9 163 19-184 22-262 (315)
184 3t34_A Dynamin-related protein 99.7 1.1E-18 3.8E-23 141.6 6.9 161 20-182 33-259 (360)
185 2rdo_7 EF-G, elongation factor 99.7 3.3E-17 1.1E-21 143.0 16.5 119 18-140 7-148 (704)
186 2xex_A Elongation factor G; GT 99.7 9E-18 3.1E-22 146.4 12.3 118 18-141 7-142 (693)
187 1wxq_A GTP-binding protein; st 99.7 2.4E-18 8.2E-23 140.8 8.1 85 22-106 1-114 (397)
188 1u0l_A Probable GTPase ENGC; p 99.7 1.1E-18 3.9E-23 138.2 5.8 134 36-180 32-169 (301)
189 1azs_C GS-alpha; complex (lyas 99.7 8.6E-18 3E-22 136.9 10.6 126 61-188 210-389 (402)
190 2qag_C Septin-7; cell cycle, c 99.7 1.6E-17 5.4E-22 136.5 8.9 160 18-181 28-224 (418)
191 2wsm_A Hydrogenase expression/ 99.7 3E-17 1E-21 124.2 6.9 155 20-185 29-215 (221)
192 2x2e_A Dynamin-1; nitration, h 99.7 1.4E-18 4.7E-23 140.7 -0.7 159 19-180 29-254 (353)
193 1jal_A YCHF protein; nucleotid 99.7 1.2E-15 4.1E-20 122.8 15.4 146 22-167 3-240 (363)
194 3vqt_A RF-3, peptide chain rel 99.7 3.7E-16 1.3E-20 132.7 12.5 118 20-141 30-167 (548)
195 2hf9_A Probable hydrogenase ni 99.7 1.1E-18 3.9E-23 132.5 -3.6 154 20-184 37-224 (226)
196 3p32_A Probable GTPase RV1496/ 99.6 2.3E-16 7.8E-21 127.7 6.7 104 70-184 172-284 (355)
197 1n0u_A EF-2, elongation factor 99.6 1.5E-15 5.2E-20 134.9 10.5 118 18-139 16-163 (842)
198 2qpt_A EH domain-containing pr 99.6 3.1E-16 1.1E-20 133.3 5.6 121 17-142 61-234 (550)
199 2www_A Methylmalonic aciduria 99.6 9.5E-16 3.2E-20 123.7 6.6 102 70-183 167-278 (349)
200 2dby_A GTP-binding protein; GD 99.6 3.3E-15 1.1E-19 120.8 9.5 155 22-176 2-254 (368)
201 4a9a_A Ribosome-interacting GT 99.6 1.6E-14 5.4E-19 116.9 11.7 154 19-176 70-240 (376)
202 3j25_A Tetracycline resistance 99.5 9.8E-16 3.3E-20 132.5 2.2 115 22-140 3-133 (638)
203 2p67_A LAO/AO transport system 99.5 3.9E-15 1.3E-19 119.8 5.6 104 69-183 148-260 (341)
204 1yrb_A ATP(GTP)binding protein 99.5 4.1E-14 1.4E-18 109.6 9.9 108 70-183 109-256 (262)
205 4fn5_A EF-G 1, elongation fact 99.5 3.4E-13 1.2E-17 118.1 16.1 119 18-140 10-151 (709)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 1.8E-14 6.2E-19 125.4 7.3 158 19-180 49-274 (772)
207 2yv5_A YJEQ protein; hydrolase 99.5 2.1E-13 7.3E-18 107.8 9.7 97 80-179 66-164 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 2.3E-13 7.7E-18 109.2 8.0 104 69-183 147-260 (337)
209 3l82_B F-box only protein 4; T 99.4 1.3E-13 4.4E-18 101.6 4.7 106 78-186 110-225 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.6E-11 5.4E-16 99.9 13.7 86 20-105 19-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 1.1E-12 3.7E-17 106.6 6.0 88 20-107 21-130 (396)
212 3l2o_B F-box only protein 4; s 99.3 2.5E-12 8.6E-17 99.2 6.1 108 77-186 194-310 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 4.8E-11 1.7E-15 96.8 0.4 142 22-171 163-318 (369)
214 3h2y_A GTPase family protein; 99.0 1.1E-09 3.6E-14 88.9 7.6 96 79-181 55-157 (368)
215 2j37_W Signal recognition part 98.9 9E-10 3.1E-14 92.4 5.9 151 20-181 100-310 (504)
216 2qag_B Septin-6, protein NEDD5 98.9 4E-09 1.4E-13 86.5 9.3 116 21-141 42-191 (427)
217 3h2y_A GTPase family protein; 98.9 6.6E-11 2.3E-15 96.0 -2.0 136 22-165 161-311 (368)
218 3sop_A Neuronal-specific septi 98.9 4.3E-09 1.5E-13 81.7 7.2 137 21-162 2-178 (270)
219 3ec1_A YQEH GTPase; atnos1, at 98.8 2.9E-09 1E-13 86.3 5.2 97 79-182 57-160 (369)
220 1puj_A YLQF, conserved hypothe 98.8 6.6E-09 2.3E-13 81.2 6.8 102 74-185 3-107 (282)
221 1tq4_A IIGP1, interferon-induc 98.8 7.5E-08 2.6E-12 78.9 12.0 157 20-183 68-252 (413)
222 1puj_A YLQF, conserved hypothe 98.6 4.4E-08 1.5E-12 76.5 5.1 59 19-81 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.6 2.5E-08 8.7E-13 77.0 3.0 57 22-82 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.5 1.8E-07 6E-12 77.1 6.4 90 70-171 183-278 (443)
225 1t9h_A YLOQ, probable GTPase E 98.4 1.9E-07 6.4E-12 73.6 3.8 91 84-177 77-170 (307)
226 3cnl_A YLQF, putative uncharac 98.4 1.5E-07 5.1E-12 72.7 3.0 94 77-181 4-98 (262)
227 2v3c_C SRP54, signal recogniti 98.3 7.1E-07 2.4E-11 73.7 6.7 84 69-163 180-271 (432)
228 1f5n_A Interferon-induced guan 98.2 1.3E-06 4.3E-11 74.6 6.0 64 18-81 35-102 (592)
229 3kl4_A SRP54, signal recogniti 98.2 7.3E-07 2.5E-11 73.4 4.4 91 69-171 179-277 (433)
230 1j8m_F SRP54, signal recogniti 98.2 3.5E-06 1.2E-10 66.2 6.8 100 70-182 181-289 (297)
231 2rcn_A Probable GTPase ENGC; Y 98.1 1.5E-05 5.1E-10 64.0 8.7 85 90-178 127-213 (358)
232 3szr_A Interferon-induced GTP- 98.0 8.5E-06 2.9E-10 70.2 7.0 26 22-47 46-71 (608)
233 1bif_A 6-phosphofructo-2-kinas 98.0 4E-07 1.4E-11 76.2 -1.6 113 20-137 38-160 (469)
234 3e70_C DPA, signal recognition 97.9 2.3E-05 8E-10 62.3 6.5 94 71-176 213-312 (328)
235 3q5d_A Atlastin-1; G protein, 97.6 7.3E-05 2.5E-09 61.8 5.9 26 19-44 65-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.4 8E-05 2.7E-09 53.9 3.3 23 23-45 2-24 (178)
237 2xxa_A Signal recognition part 97.3 0.00071 2.4E-08 55.8 8.3 83 69-162 183-272 (433)
238 1kgd_A CASK, peripheral plasma 97.3 0.00013 4.6E-09 52.7 3.1 22 23-44 7-28 (180)
239 2yv5_A YJEQ protein; hydrolase 97.3 0.00052 1.8E-08 53.9 6.4 22 23-45 167-188 (302)
240 1lvg_A Guanylate kinase, GMP k 97.3 0.00016 5.3E-09 53.2 3.1 22 23-44 6-27 (198)
241 1t9h_A YLOQ, probable GTPase E 97.2 9.5E-05 3.3E-09 58.2 1.5 23 23-45 175-197 (307)
242 3tr0_A Guanylate kinase, GMP k 97.2 0.00021 7.2E-09 52.5 3.1 22 23-44 9-30 (205)
243 1zp6_A Hypothetical protein AT 97.2 0.00022 7.5E-09 51.8 3.0 22 23-44 11-32 (191)
244 3a00_A Guanylate kinase, GMP k 97.2 0.00022 7.4E-09 51.8 3.0 22 24-45 4-25 (186)
245 1znw_A Guanylate kinase, GMP k 97.1 0.00024 8.2E-09 52.5 3.0 23 23-45 22-44 (207)
246 4gp7_A Metallophosphoesterase; 97.1 0.00023 7.8E-09 51.0 2.8 20 23-42 11-30 (171)
247 1ex7_A Guanylate kinase; subst 97.1 5.9E-05 2E-09 55.0 -0.4 21 24-44 4-24 (186)
248 3cwq_A Para family chromosome 97.1 0.0039 1.3E-07 46.0 9.6 85 70-161 68-153 (209)
249 1z6g_A Guanylate kinase; struc 97.1 0.00029 9.8E-09 52.6 3.0 23 23-45 25-47 (218)
250 3c8u_A Fructokinase; YP_612366 97.1 0.0003 1E-08 52.0 3.0 26 19-44 20-45 (208)
251 1htw_A HI0065; nucleotide-bind 97.1 0.00033 1.1E-08 49.6 3.0 23 23-45 35-57 (158)
252 1s96_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 52.5 3.1 23 23-45 18-40 (219)
253 3tau_A Guanylate kinase, GMP k 97.0 0.0004 1.4E-08 51.4 3.2 23 23-45 10-32 (208)
254 3tif_A Uncharacterized ABC tra 97.0 0.00038 1.3E-08 52.6 3.1 23 23-45 33-55 (235)
255 3ney_A 55 kDa erythrocyte memb 97.0 0.00052 1.8E-08 50.4 3.5 23 22-44 20-42 (197)
256 1kag_A SKI, shikimate kinase I 97.0 0.00047 1.6E-08 49.2 3.1 23 22-44 5-27 (173)
257 2pcj_A ABC transporter, lipopr 96.9 0.00043 1.5E-08 51.9 3.0 23 23-45 32-54 (224)
258 2bdt_A BH3686; alpha-beta prot 96.9 0.00047 1.6E-08 50.0 3.0 21 23-43 4-24 (189)
259 2j41_A Guanylate kinase; GMP, 96.9 0.00049 1.7E-08 50.5 3.0 24 22-45 7-30 (207)
260 2i3b_A HCR-ntpase, human cance 96.9 0.00048 1.6E-08 50.3 2.9 22 23-44 3-24 (189)
261 2rcn_A Probable GTPase ENGC; Y 96.9 0.00055 1.9E-08 54.9 3.4 23 23-45 217-239 (358)
262 2onk_A Molybdate/tungstate ABC 96.9 0.00054 1.9E-08 52.0 3.2 23 23-45 26-48 (240)
263 2qor_A Guanylate kinase; phosp 96.9 0.00057 1.9E-08 50.3 3.1 23 22-44 13-35 (204)
264 1sgw_A Putative ABC transporte 96.9 0.00057 1.9E-08 50.9 3.1 23 23-45 37-59 (214)
265 4eun_A Thermoresistant glucoki 96.9 0.00056 1.9E-08 50.2 3.1 23 22-44 30-52 (200)
266 3asz_A Uridine kinase; cytidin 96.9 0.00063 2.2E-08 50.2 3.4 24 21-44 6-29 (211)
267 1b0u_A Histidine permease; ABC 96.9 0.00056 1.9E-08 52.6 3.1 23 23-45 34-56 (262)
268 3lw7_A Adenylate kinase relate 96.9 0.00063 2.1E-08 48.3 3.2 20 22-41 2-21 (179)
269 3gfo_A Cobalt import ATP-bindi 96.9 0.00056 1.9E-08 53.0 3.1 22 24-45 37-58 (275)
270 2bbw_A Adenylate kinase 4, AK4 96.9 0.00065 2.2E-08 51.6 3.4 21 22-42 28-48 (246)
271 2cbz_A Multidrug resistance-as 96.9 0.00064 2.2E-08 51.5 3.3 23 23-45 33-55 (237)
272 4g1u_C Hemin import ATP-bindin 96.8 0.0006 2E-08 52.5 3.1 22 24-45 40-61 (266)
273 3kb2_A SPBC2 prophage-derived 96.8 0.00071 2.4E-08 48.0 3.3 22 23-44 3-24 (173)
274 1ly1_A Polynucleotide kinase; 96.8 0.0008 2.7E-08 48.1 3.6 22 22-43 3-24 (181)
275 1g6h_A High-affinity branched- 96.8 0.00061 2.1E-08 52.2 3.1 23 23-45 35-57 (257)
276 2pze_A Cystic fibrosis transme 96.8 0.00072 2.5E-08 50.9 3.4 23 23-45 36-58 (229)
277 1mv5_A LMRA, multidrug resista 96.8 0.00071 2.4E-08 51.4 3.4 23 23-45 30-52 (243)
278 2ff7_A Alpha-hemolysin translo 96.8 0.00072 2.4E-08 51.5 3.3 23 23-45 37-59 (247)
279 2olj_A Amino acid ABC transpor 96.8 0.00067 2.3E-08 52.2 3.1 23 23-45 52-74 (263)
280 3ec2_A DNA replication protein 96.8 0.00057 1.9E-08 49.2 2.5 24 22-45 39-62 (180)
281 1ji0_A ABC transporter; ATP bi 96.8 0.00068 2.3E-08 51.4 3.1 23 23-45 34-56 (240)
282 1vpl_A ABC transporter, ATP-bi 96.8 0.00072 2.5E-08 51.8 3.1 23 23-45 43-65 (256)
283 2qi9_C Vitamin B12 import ATP- 96.8 0.00083 2.8E-08 51.2 3.4 23 23-45 28-50 (249)
284 3fb4_A Adenylate kinase; psych 96.8 0.00082 2.8E-08 49.8 3.3 22 22-43 1-22 (216)
285 2eyu_A Twitching motility prot 96.8 0.00072 2.4E-08 52.0 3.0 23 22-44 26-48 (261)
286 1knq_A Gluconate kinase; ALFA/ 96.8 0.001 3.6E-08 47.5 3.7 22 22-43 9-30 (175)
287 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00077 2.6E-08 51.4 3.1 22 23-44 31-52 (250)
288 2if2_A Dephospho-COA kinase; a 96.8 0.00081 2.8E-08 49.3 3.1 22 22-43 2-23 (204)
289 3b85_A Phosphate starvation-in 96.8 0.00062 2.1E-08 50.5 2.5 22 23-44 24-45 (208)
290 2ghi_A Transport protein; mult 96.8 0.00084 2.9E-08 51.5 3.3 23 23-45 48-70 (260)
291 2ihy_A ABC transporter, ATP-bi 96.8 0.00085 2.9E-08 52.1 3.4 23 23-45 49-71 (279)
292 2v9p_A Replication protein E1; 96.8 0.0008 2.7E-08 52.8 3.2 22 23-44 128-149 (305)
293 3t61_A Gluconokinase; PSI-biol 96.8 0.00079 2.7E-08 49.4 3.0 23 22-44 19-41 (202)
294 3dl0_A Adenylate kinase; phosp 96.8 0.00088 3E-08 49.6 3.3 22 22-43 1-22 (216)
295 1jjv_A Dephospho-COA kinase; P 96.8 0.00099 3.4E-08 49.0 3.5 22 22-43 3-24 (206)
296 3vaa_A Shikimate kinase, SK; s 96.8 0.0009 3.1E-08 49.0 3.3 22 22-43 26-47 (199)
297 2zu0_C Probable ATP-dependent 96.7 0.00092 3.1E-08 51.5 3.4 22 23-44 48-69 (267)
298 2ixe_A Antigen peptide transpo 96.7 0.00091 3.1E-08 51.7 3.3 23 23-45 47-69 (271)
299 1uj2_A Uridine-cytidine kinase 96.7 0.001 3.6E-08 50.6 3.6 27 17-43 18-44 (252)
300 2cdn_A Adenylate kinase; phosp 96.7 0.0012 4E-08 48.4 3.7 27 17-43 16-42 (201)
301 1cke_A CK, MSSA, protein (cyti 96.7 0.00096 3.3E-08 49.7 3.3 22 22-43 6-27 (227)
302 2nq2_C Hypothetical ABC transp 96.7 0.00088 3E-08 51.2 3.1 23 23-45 33-55 (253)
303 3uie_A Adenylyl-sulfate kinase 96.7 0.00091 3.1E-08 49.0 3.0 25 20-44 24-48 (200)
304 1qhx_A CPT, protein (chloramph 96.7 0.00096 3.3E-08 47.7 3.1 22 23-44 5-26 (178)
305 2ehv_A Hypothetical protein PH 96.7 0.00094 3.2E-08 50.4 3.2 21 23-43 32-52 (251)
306 2yz2_A Putative ABC transporte 96.7 0.00091 3.1E-08 51.5 3.1 23 23-45 35-57 (266)
307 1u0l_A Probable GTPase ENGC; p 96.7 0.0011 3.7E-08 52.0 3.5 23 23-45 171-193 (301)
308 1np6_A Molybdopterin-guanine d 96.7 0.001 3.5E-08 47.8 3.1 23 22-44 7-29 (174)
309 2jaq_A Deoxyguanosine kinase; 96.7 0.0011 3.6E-08 48.5 3.2 21 23-43 2-22 (205)
310 4a74_A DNA repair and recombin 96.7 0.00091 3.1E-08 49.9 2.9 23 23-45 27-49 (231)
311 3lnc_A Guanylate kinase, GMP k 96.7 0.00059 2E-08 51.3 1.8 22 23-44 29-51 (231)
312 3aez_A Pantothenate kinase; tr 96.7 0.00096 3.3E-08 52.6 3.1 27 19-45 88-114 (312)
313 2pjz_A Hypothetical protein ST 96.7 0.0013 4.5E-08 50.6 3.7 23 23-45 32-54 (263)
314 3co5_A Putative two-component 96.7 0.0027 9.4E-08 43.8 5.1 23 22-44 28-50 (143)
315 1nks_A Adenylate kinase; therm 96.6 0.0013 4.4E-08 47.5 3.4 21 23-43 3-23 (194)
316 3cm0_A Adenylate kinase; ATP-b 96.6 0.0014 4.9E-08 47.2 3.6 22 22-43 5-26 (186)
317 3sr0_A Adenylate kinase; phosp 96.6 0.0013 4.4E-08 48.7 3.3 22 22-43 1-22 (206)
318 2qt1_A Nicotinamide riboside k 96.6 0.0016 5.6E-08 47.8 3.9 25 20-44 20-44 (207)
319 3tqc_A Pantothenate kinase; bi 96.6 0.002 6.8E-08 50.9 4.4 26 18-43 89-114 (321)
320 1kht_A Adenylate kinase; phosp 96.6 0.0014 4.7E-08 47.3 3.3 22 22-43 4-25 (192)
321 2rhm_A Putative kinase; P-loop 96.6 0.0016 5.3E-08 47.2 3.6 22 22-43 6-27 (193)
322 2x8a_A Nuclear valosin-contain 96.6 0.0012 4E-08 51.1 3.0 21 24-44 47-67 (274)
323 3iij_A Coilin-interacting nucl 96.6 0.0014 4.9E-08 47.0 3.3 23 21-43 11-33 (180)
324 1e4v_A Adenylate kinase; trans 96.6 0.0013 4.5E-08 48.7 3.1 22 22-43 1-22 (214)
325 2f1r_A Molybdopterin-guanine d 96.6 0.00061 2.1E-08 48.9 1.2 22 23-44 4-25 (171)
326 3trf_A Shikimate kinase, SK; a 96.6 0.0015 5.1E-08 47.0 3.3 22 22-43 6-27 (185)
327 1aky_A Adenylate kinase; ATP:A 96.6 0.0015 5.1E-08 48.6 3.4 23 21-43 4-26 (220)
328 1lw7_A Transcriptional regulat 96.5 0.0011 3.7E-08 53.4 2.7 25 21-45 170-194 (365)
329 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0015 5.2E-08 52.4 3.5 22 24-45 33-54 (359)
330 2bbs_A Cystic fibrosis transme 96.5 0.0014 4.7E-08 51.2 3.2 23 23-45 66-88 (290)
331 3tlx_A Adenylate kinase 2; str 96.5 0.0018 6.2E-08 49.1 3.7 24 20-43 28-51 (243)
332 2jeo_A Uridine-cytidine kinase 96.5 0.0016 5.6E-08 49.3 3.5 25 20-44 24-48 (245)
333 2chg_A Replication factor C sm 96.5 0.0046 1.6E-07 45.3 5.9 21 24-44 41-61 (226)
334 3nh6_A ATP-binding cassette SU 96.5 0.00092 3.2E-08 52.5 2.1 23 23-45 82-104 (306)
335 2kjq_A DNAA-related protein; s 96.5 0.00094 3.2E-08 46.7 1.9 23 23-45 38-60 (149)
336 1y63_A LMAJ004144AAA protein; 96.5 0.002 6.7E-08 46.6 3.6 24 21-44 10-33 (184)
337 1ukz_A Uridylate kinase; trans 96.5 0.002 6.8E-08 47.2 3.7 24 20-43 14-37 (203)
338 1tev_A UMP-CMP kinase; ploop, 96.5 0.002 6.7E-08 46.6 3.6 22 22-43 4-25 (196)
339 1uf9_A TT1252 protein; P-loop, 96.5 0.002 6.8E-08 47.0 3.6 25 20-44 7-31 (203)
340 1ixz_A ATP-dependent metallopr 96.5 0.0016 5.3E-08 49.6 3.1 22 24-45 52-73 (254)
341 2plr_A DTMP kinase, probable t 96.5 0.002 6.8E-08 47.3 3.6 22 22-43 5-26 (213)
342 3rlf_A Maltose/maltodextrin im 96.5 0.0016 5.4E-08 52.7 3.2 22 24-45 32-53 (381)
343 1via_A Shikimate kinase; struc 96.5 0.0016 5.5E-08 46.5 2.9 21 23-43 6-26 (175)
344 3tui_C Methionine import ATP-b 96.5 0.0016 5.6E-08 52.3 3.2 22 24-45 57-78 (366)
345 1rj9_A FTSY, signal recognitio 96.5 0.0016 5.4E-08 51.2 3.0 91 71-173 186-288 (304)
346 1z47_A CYSA, putative ABC-tran 96.5 0.002 6.7E-08 51.7 3.6 22 24-45 44-65 (355)
347 2yyz_A Sugar ABC transporter, 96.5 0.0016 5.5E-08 52.3 3.1 22 24-45 32-53 (359)
348 2pt5_A Shikimate kinase, SK; a 96.5 0.002 6.7E-08 45.6 3.3 21 23-43 2-22 (168)
349 1sxj_E Activator 1 40 kDa subu 96.5 0.007 2.4E-07 48.2 6.9 21 24-44 39-59 (354)
350 3jvv_A Twitching mobility prot 96.4 0.0015 5.3E-08 52.4 3.0 22 23-44 125-146 (356)
351 1rz3_A Hypothetical protein rb 96.4 0.003 1E-07 46.3 4.4 25 19-43 20-44 (201)
352 3b9q_A Chloroplast SRP recepto 96.4 0.0016 5.6E-08 51.1 3.1 22 22-43 101-122 (302)
353 2it1_A 362AA long hypothetical 96.4 0.0017 5.8E-08 52.3 3.2 22 24-45 32-53 (362)
354 1odf_A YGR205W, hypothetical 3 96.4 0.0024 8.1E-08 49.8 3.9 25 19-43 29-53 (290)
355 1gvn_B Zeta; postsegregational 96.4 0.0023 7.8E-08 49.8 3.7 24 20-43 32-55 (287)
356 1zd8_A GTP:AMP phosphotransfer 96.4 0.002 6.7E-08 48.2 3.2 22 22-43 8-29 (227)
357 1g29_1 MALK, maltose transport 96.4 0.0018 6.2E-08 52.3 3.1 22 24-45 32-53 (372)
358 2xb4_A Adenylate kinase; ATP-b 96.4 0.0021 7.2E-08 48.0 3.3 21 23-43 2-22 (223)
359 1v43_A Sugar-binding transport 96.4 0.0019 6.5E-08 52.2 3.2 23 23-45 39-61 (372)
360 2yvu_A Probable adenylyl-sulfa 96.4 0.0031 1E-07 45.5 4.0 24 21-44 13-36 (186)
361 1nn5_A Similar to deoxythymidy 96.4 0.0022 7.6E-08 47.2 3.3 23 21-43 9-31 (215)
362 1jbk_A CLPB protein; beta barr 96.4 0.0023 8E-08 45.8 3.3 23 22-44 44-66 (195)
363 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0019 6.4E-08 51.4 3.0 23 23-45 173-195 (330)
364 2v54_A DTMP kinase, thymidylat 96.3 0.0024 8.3E-08 46.6 3.4 23 22-44 5-27 (204)
365 1xjc_A MOBB protein homolog; s 96.3 0.0025 8.4E-08 45.6 3.3 23 22-44 5-27 (169)
366 1sq5_A Pantothenate kinase; P- 96.3 0.0026 8.9E-08 50.0 3.7 25 20-44 79-103 (308)
367 2ewv_A Twitching motility prot 96.3 0.0021 7.3E-08 51.9 3.2 23 22-44 137-159 (372)
368 1qf9_A UMP/CMP kinase, protein 96.3 0.0032 1.1E-07 45.4 3.9 22 22-43 7-28 (194)
369 2gza_A Type IV secretion syste 96.3 0.0019 6.7E-08 51.9 2.9 23 23-45 177-199 (361)
370 1zak_A Adenylate kinase; ATP:A 96.3 0.0021 7.1E-08 47.9 2.8 22 22-43 6-27 (222)
371 4ido_A Atlastin-1; GTPase, GTP 96.3 0.0095 3.2E-07 49.2 6.9 24 19-42 65-88 (457)
372 2c95_A Adenylate kinase 1; tra 96.3 0.0026 9E-08 46.1 3.3 22 22-43 10-31 (196)
373 2z0h_A DTMP kinase, thymidylat 96.3 0.0027 9.1E-08 46.1 3.3 22 23-44 2-23 (197)
374 2pbr_A DTMP kinase, thymidylat 96.3 0.0026 9.1E-08 45.9 3.3 21 23-43 2-22 (195)
375 3umf_A Adenylate kinase; rossm 96.3 0.0035 1.2E-07 46.7 3.9 21 23-43 31-51 (217)
376 1iy2_A ATP-dependent metallopr 96.3 0.0023 7.9E-08 49.4 3.1 22 24-45 76-97 (278)
377 2vp4_A Deoxynucleoside kinase; 96.3 0.0023 7.9E-08 48.0 3.0 26 19-44 18-43 (230)
378 4e22_A Cytidylate kinase; P-lo 96.3 0.0027 9.2E-08 48.4 3.4 21 22-42 28-48 (252)
379 2ze6_A Isopentenyl transferase 96.3 0.0024 8.2E-08 48.7 3.1 21 23-43 3-23 (253)
380 3be4_A Adenylate kinase; malar 96.3 0.0026 8.9E-08 47.2 3.2 22 22-43 6-27 (217)
381 3kta_A Chromosome segregation 96.3 0.0025 8.5E-08 45.7 3.0 21 23-43 28-48 (182)
382 3d31_A Sulfate/molybdate ABC t 96.3 0.0015 5.2E-08 52.2 2.0 23 23-45 28-50 (348)
383 1in4_A RUVB, holliday junction 96.3 0.0023 7.9E-08 50.9 3.0 22 23-44 53-74 (334)
384 2bwj_A Adenylate kinase 5; pho 96.3 0.0027 9.2E-08 46.1 3.2 23 22-44 13-35 (199)
385 1gtv_A TMK, thymidylate kinase 96.2 0.00096 3.3E-08 49.2 0.7 22 23-44 2-23 (214)
386 2p5t_B PEZT; postsegregational 96.2 0.0022 7.6E-08 48.9 2.7 26 19-44 30-55 (253)
387 3gd7_A Fusion complex of cysti 96.2 0.0024 8.2E-08 51.9 3.0 22 23-44 49-70 (390)
388 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0027 9.2E-08 48.6 3.2 22 22-43 5-26 (260)
389 2wwf_A Thymidilate kinase, put 96.2 0.0028 9.4E-08 46.6 3.1 23 21-43 10-32 (212)
390 1e6c_A Shikimate kinase; phosp 96.2 0.0029 9.9E-08 44.9 3.2 21 23-43 4-24 (173)
391 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0026 8.9E-08 47.3 3.0 22 23-44 25-46 (235)
392 1p9r_A General secretion pathw 96.2 0.0025 8.4E-08 52.4 3.0 23 23-45 169-191 (418)
393 2pez_A Bifunctional 3'-phospho 96.2 0.0029 1E-07 45.3 3.1 23 22-44 6-28 (179)
394 2og2_A Putative signal recogni 96.2 0.0027 9.1E-08 51.0 3.1 23 21-43 157-179 (359)
395 2oap_1 GSPE-2, type II secreti 96.2 0.0026 8.9E-08 53.6 3.1 23 23-45 262-284 (511)
396 1vht_A Dephospho-COA kinase; s 96.2 0.0036 1.2E-07 46.3 3.6 23 21-43 4-26 (218)
397 2iyv_A Shikimate kinase, SK; t 96.2 0.0031 1.1E-07 45.3 3.1 21 23-43 4-24 (184)
398 1ak2_A Adenylate kinase isoenz 96.1 0.0037 1.3E-07 46.9 3.5 23 21-43 16-38 (233)
399 1lv7_A FTSH; alpha/beta domain 96.1 0.0031 1.1E-07 48.0 3.1 23 22-44 46-68 (257)
400 3uc9_A Increased recombination 96.1 0.0054 1.8E-07 45.8 4.2 27 19-45 27-53 (233)
401 1oxx_K GLCV, glucose, ABC tran 96.1 0.0015 5.1E-08 52.4 1.2 23 23-45 33-55 (353)
402 1p5z_B DCK, deoxycytidine kina 96.1 0.0025 8.7E-08 48.8 2.4 25 20-44 23-47 (263)
403 1zuh_A Shikimate kinase; alpha 96.1 0.0043 1.5E-07 43.9 3.4 22 22-43 8-29 (168)
404 2yhs_A FTSY, cell division pro 96.1 0.0033 1.1E-07 52.5 3.1 94 70-175 376-481 (503)
405 2p65_A Hypothetical protein PF 96.1 0.0029 9.8E-08 45.2 2.5 24 21-44 43-66 (187)
406 2vli_A Antibiotic resistance p 96.1 0.0022 7.7E-08 45.9 1.8 23 22-44 6-28 (183)
407 2obl_A ESCN; ATPase, hydrolase 96.0 0.0037 1.3E-07 50.0 3.2 23 23-45 73-95 (347)
408 1cr0_A DNA primase/helicase; R 96.0 0.0033 1.1E-07 48.9 2.9 23 23-45 37-59 (296)
409 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0043 1.5E-07 43.3 3.2 19 24-42 26-44 (149)
410 1nij_A Hypothetical protein YJ 96.0 0.0027 9.2E-08 50.2 2.3 24 22-45 5-28 (318)
411 3bos_A Putative DNA replicatio 96.0 0.0042 1.4E-07 46.3 3.3 24 21-44 52-75 (242)
412 3nwj_A ATSK2; P loop, shikimat 96.0 0.0035 1.2E-07 47.8 2.8 22 22-43 49-70 (250)
413 2w58_A DNAI, primosome compone 96.0 0.004 1.4E-07 45.5 3.0 23 22-44 55-77 (202)
414 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0031 1.1E-07 52.4 2.7 23 23-45 140-162 (460)
415 1n0w_A DNA repair protein RAD5 96.0 0.004 1.4E-07 46.7 3.1 22 23-44 26-47 (243)
416 1m7g_A Adenylylsulfate kinase; 96.0 0.0041 1.4E-07 45.9 3.0 24 21-44 25-48 (211)
417 2cvh_A DNA repair and recombin 96.0 0.0041 1.4E-07 45.9 3.0 21 23-43 22-42 (220)
418 3r20_A Cytidylate kinase; stru 96.0 0.0047 1.6E-07 46.5 3.3 23 21-43 9-31 (233)
419 2grj_A Dephospho-COA kinase; T 96.0 0.0061 2.1E-07 44.5 3.8 26 19-44 10-35 (192)
420 2f6r_A COA synthase, bifunctio 95.9 0.0052 1.8E-07 47.6 3.6 24 20-43 74-97 (281)
421 4eaq_A DTMP kinase, thymidylat 95.9 0.0045 1.5E-07 46.5 3.1 25 20-44 25-49 (229)
422 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0062 2.1E-07 51.7 4.1 23 23-45 49-71 (538)
423 3pfi_A Holliday junction ATP-d 95.9 0.023 8E-07 44.9 7.2 24 21-44 55-78 (338)
424 3n70_A Transport activator; si 95.8 0.0057 1.9E-07 42.3 3.1 26 20-45 23-48 (145)
425 3ozx_A RNAse L inhibitor; ATP 95.8 0.0061 2.1E-07 51.7 3.8 23 23-45 27-49 (538)
426 1svm_A Large T antigen; AAA+ f 95.8 0.0052 1.8E-07 49.7 3.0 23 21-43 169-191 (377)
427 3b9p_A CG5977-PA, isoform A; A 95.8 0.0052 1.8E-07 47.7 2.9 24 21-44 54-77 (297)
428 3euj_A Chromosome partition pr 95.8 0.0053 1.8E-07 51.2 3.1 22 22-43 30-51 (483)
429 1ltq_A Polynucleotide kinase; 95.8 0.0057 2E-07 47.6 3.2 22 22-43 3-24 (301)
430 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0058 2E-07 46.4 3.1 24 21-44 39-62 (262)
431 3h4m_A Proteasome-activating n 95.7 0.0055 1.9E-07 47.2 3.0 24 21-44 51-74 (285)
432 2dpy_A FLII, flagellum-specifi 95.7 0.0059 2E-07 50.4 3.2 23 23-45 159-181 (438)
433 1njg_A DNA polymerase III subu 95.7 0.0059 2E-07 45.3 3.0 22 23-44 47-68 (250)
434 3cf0_A Transitional endoplasmi 95.7 0.0057 1.9E-07 47.8 3.0 25 21-45 49-73 (301)
435 3j16_B RLI1P; ribosome recycli 95.7 0.0076 2.6E-07 51.9 3.9 23 23-45 105-127 (608)
436 3t15_A Ribulose bisphosphate c 95.7 0.0064 2.2E-07 47.4 3.2 25 20-44 35-59 (293)
437 3b60_A Lipid A export ATP-bind 95.7 0.0061 2.1E-07 52.2 3.2 23 23-45 371-393 (582)
438 1tue_A Replication protein E1; 95.7 0.0054 1.9E-07 45.1 2.5 22 23-44 60-81 (212)
439 1q3t_A Cytidylate kinase; nucl 95.6 0.008 2.7E-07 45.1 3.3 25 19-43 14-38 (236)
440 3gmt_A Adenylate kinase; ssgci 95.6 0.0081 2.8E-07 45.1 3.3 24 20-43 7-30 (230)
441 3qf7_A RAD50; ABC-ATPase, ATPa 95.6 0.0071 2.4E-07 48.7 3.2 19 24-42 26-44 (365)
442 3bk7_A ABC transporter ATP-bin 95.6 0.0093 3.2E-07 51.3 4.0 23 23-45 119-141 (607)
443 1nlf_A Regulatory protein REPA 95.6 0.0068 2.3E-07 46.8 2.9 21 23-43 32-52 (279)
444 3syl_A Protein CBBX; photosynt 95.6 0.0089 3E-07 46.6 3.6 24 20-43 66-89 (309)
445 3b5x_A Lipid A export ATP-bind 95.5 0.0093 3.2E-07 51.1 3.9 23 23-45 371-393 (582)
446 4b4t_K 26S protease regulatory 95.5 0.0074 2.5E-07 49.6 3.0 24 21-44 206-229 (428)
447 2px0_A Flagellar biosynthesis 95.5 0.0081 2.8E-07 46.9 3.1 90 70-171 183-278 (296)
448 4b4t_M 26S protease regulatory 95.5 0.0076 2.6E-07 49.6 3.1 25 20-44 214-238 (434)
449 1l8q_A Chromosomal replication 95.5 0.0075 2.5E-07 47.5 3.0 23 22-44 38-60 (324)
450 1yqt_A RNAse L inhibitor; ATP- 95.5 0.011 3.8E-07 50.1 4.1 23 23-45 314-336 (538)
451 4fcw_A Chaperone protein CLPB; 95.5 0.011 3.8E-07 46.0 3.8 25 21-45 47-71 (311)
452 3zvl_A Bifunctional polynucleo 95.4 0.0086 2.9E-07 49.1 3.2 24 21-44 258-281 (416)
453 1azs_C GS-alpha; complex (lyas 95.4 0.011 3.7E-07 48.2 3.7 30 13-42 32-61 (402)
454 3ozx_A RNAse L inhibitor; ATP 95.4 0.012 4E-07 50.0 4.0 23 23-45 296-318 (538)
455 3bk7_A ABC transporter ATP-bin 95.4 0.012 4E-07 50.7 4.1 23 23-45 384-406 (607)
456 4b4t_L 26S protease subunit RP 95.4 0.0084 2.9E-07 49.4 3.1 25 20-44 214-238 (437)
457 1vma_A Cell division protein F 95.4 0.0088 3E-07 46.9 3.1 93 70-174 187-291 (306)
458 1d2n_A N-ethylmaleimide-sensit 95.4 0.013 4.3E-07 45.0 4.0 26 19-44 62-87 (272)
459 2yl4_A ATP-binding cassette SU 95.4 0.0063 2.2E-07 52.3 2.4 23 23-45 372-394 (595)
460 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0088 3E-07 47.3 2.9 24 21-44 45-68 (322)
461 3qf4_B Uncharacterized ABC tra 95.4 0.007 2.4E-07 52.1 2.5 23 23-45 383-405 (598)
462 4dzz_A Plasmid partitioning pr 95.4 0.029 9.8E-07 40.8 5.6 85 70-161 76-162 (206)
463 3ake_A Cytidylate kinase; CMP 95.4 0.011 3.7E-07 43.2 3.3 21 23-43 4-24 (208)
464 2dr3_A UPF0273 protein PH0284; 95.3 0.0096 3.3E-07 44.6 3.0 21 23-43 25-45 (247)
465 1ofh_A ATP-dependent HSL prote 95.3 0.0097 3.3E-07 46.3 3.1 23 22-44 51-73 (310)
466 4b4t_J 26S protease regulatory 95.3 0.0094 3.2E-07 48.5 3.0 25 20-44 181-205 (405)
467 4a82_A Cystic fibrosis transme 95.3 0.0061 2.1E-07 52.2 1.9 23 23-45 369-391 (578)
468 2qby_A CDC6 homolog 1, cell di 95.3 0.0095 3.2E-07 47.7 2.9 23 22-44 46-68 (386)
469 3qks_A DNA double-strand break 95.3 0.012 4E-07 43.3 3.2 20 23-42 25-44 (203)
470 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.8E-07 43.3 3.0 24 22-45 35-58 (205)
471 1pzn_A RAD51, DNA repair and r 95.2 0.0098 3.4E-07 47.6 2.9 23 23-45 133-155 (349)
472 3eie_A Vacuolar protein sortin 95.2 0.011 3.9E-07 46.5 3.2 24 21-44 51-74 (322)
473 1sxj_C Activator 1 40 kDa subu 95.2 0.01 3.5E-07 47.1 3.0 23 23-45 48-70 (340)
474 3qf4_A ABC transporter, ATP-bi 95.2 0.0079 2.7E-07 51.6 2.4 23 23-45 371-393 (587)
475 1fnn_A CDC6P, cell division co 95.2 0.011 3.8E-07 47.4 3.1 23 23-45 46-68 (389)
476 3j16_B RLI1P; ribosome recycli 95.1 0.015 5.2E-07 50.0 3.9 23 24-46 381-403 (608)
477 2r62_A Cell division protease 95.1 0.0057 1.9E-07 46.8 1.0 22 23-44 46-67 (268)
478 4b4t_I 26S protease regulatory 95.1 0.013 4.3E-07 48.1 3.0 25 20-44 215-239 (437)
479 1qhl_A Protein (cell division 95.0 0.0018 6.3E-08 48.6 -1.8 22 24-45 30-51 (227)
480 2ga8_A Hypothetical 39.9 kDa p 95.0 0.017 5.8E-07 46.2 3.5 23 21-43 24-46 (359)
481 1sxj_D Activator 1 41 kDa subu 95.0 0.014 4.7E-07 46.3 3.0 21 24-44 61-81 (353)
482 2qp9_X Vacuolar protein sortin 95.0 0.014 4.7E-07 46.8 3.0 23 22-44 85-107 (355)
483 3crm_A TRNA delta(2)-isopenten 95.0 0.015 5.2E-07 45.9 3.1 23 22-44 6-28 (323)
484 3uk6_A RUVB-like 2; hexameric 94.9 0.014 4.6E-07 46.7 2.9 23 22-44 71-93 (368)
485 2dhr_A FTSH; AAA+ protein, hex 94.9 0.014 4.7E-07 49.0 3.0 23 23-45 66-88 (499)
486 2v1u_A Cell division control p 94.9 0.013 4.5E-07 46.9 2.7 24 21-44 44-67 (387)
487 3d3q_A TRNA delta(2)-isopenten 94.9 0.016 5.5E-07 46.1 3.1 23 22-44 8-30 (340)
488 4b4t_H 26S protease regulatory 94.9 0.013 4.5E-07 48.4 2.6 25 20-44 242-266 (467)
489 3m6a_A ATP-dependent protease 94.9 0.014 4.9E-07 49.5 3.0 22 23-44 110-131 (543)
490 2ce7_A Cell division protein F 94.9 0.015 5.3E-07 48.4 3.1 22 23-44 51-72 (476)
491 3u61_B DNA polymerase accessor 94.8 0.065 2.2E-06 42.0 6.6 22 24-45 51-72 (324)
492 2qgz_A Helicase loader, putati 94.8 0.018 6.2E-07 45.2 3.3 24 21-44 152-175 (308)
493 2bjv_A PSP operon transcriptio 94.8 0.018 6.2E-07 43.9 3.2 24 22-45 30-53 (265)
494 1tf7_A KAIC; homohexamer, hexa 94.8 0.015 5.2E-07 49.1 3.0 19 24-42 42-60 (525)
495 3d8b_A Fidgetin-like protein 1 94.8 0.016 5.6E-07 46.4 3.0 24 21-44 117-140 (357)
496 2iw3_A Elongation factor 3A; a 94.8 0.019 6.5E-07 51.9 3.6 24 23-46 463-486 (986)
497 2ocp_A DGK, deoxyguanosine kin 94.8 0.022 7.4E-07 42.9 3.5 23 22-44 3-25 (241)
498 3ea0_A ATPase, para family; al 94.8 0.23 7.9E-06 36.9 9.2 89 70-166 119-207 (245)
499 2z4s_A Chromosomal replication 94.7 0.016 5.6E-07 47.8 3.0 23 22-44 131-153 (440)
500 3hws_A ATP-dependent CLP prote 94.7 0.018 6E-07 46.2 3.1 25 21-45 51-75 (363)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.4e-41 Score=257.53 Aligned_cols=167 Identities=41% Similarity=0.723 Sum_probs=146.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
+.|||+|+|.+|||||||+++|+.+.|...+.+|.+.++..+.+..++..+.+.||||+|++.|..++..+++.++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|||++++.+|+++..|+..+......+.|++||+||+|+.+.+.++.++.+.+++.+++.|++|||++|.||+++|+.|+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999999999877777899999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy2300 180 DIICDKM 186 (221)
Q Consensus 180 ~~~~~~~ 186 (221)
+.+....
T Consensus 172 ~~i~~~~ 178 (216)
T 4dkx_A 172 AALPGME 178 (216)
T ss_dssp HHC----
T ss_pred HHHHhhh
Confidence 8876543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=9.5e-37 Score=229.61 Aligned_cols=173 Identities=49% Similarity=0.913 Sum_probs=158.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35678999999999999999999999999888888999988888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999877667899999999999988777888888899999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q psy2300 177 RLVDIICDKMSES 189 (221)
Q Consensus 177 ~i~~~~~~~~~~~ 189 (221)
+|.+.+.+.....
T Consensus 164 ~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 164 TMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999998775443
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-36 Score=228.64 Aligned_cols=172 Identities=41% Similarity=0.745 Sum_probs=146.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 35678999999999999999999999999887888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+|+|||++++.++..+..|+..+......+.|++||+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999877666899999999999977677788888899999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q psy2300 177 RLVDIICDKMSE 188 (221)
Q Consensus 177 ~i~~~~~~~~~~ 188 (221)
+|.+.+.++...
T Consensus 169 ~l~~~i~~~~~~ 180 (223)
T 3cpj_B 169 ELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHTTCC--
T ss_pred HHHHHHHHHhhh
Confidence 999998876543
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.5e-35 Score=220.52 Aligned_cols=184 Identities=37% Similarity=0.665 Sum_probs=158.2
Q ss_pred cCcchhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q psy2300 4 VGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 83 (221)
....+|--.+.+....+.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 4 SHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 83 (191)
T ss_dssp ------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred cccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 33445556666777788999999999999999999999999987777888888888888888888899999999999999
Q ss_pred cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEE
Q psy2300 84 RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFET 163 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (221)
..++..++..+|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++
T Consensus 84 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 163 (191)
T 2a5j_A 84 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMET 163 (191)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999987766789999999999997767778888999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 164 SAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
||++|.|++++|++|.+.+.++..
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 164 SAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 5
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-35 Score=221.11 Aligned_cols=175 Identities=85% Similarity=1.338 Sum_probs=159.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45688999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887666899999999999988777888889999999999999999999999999999
Q ss_pred HHHHHHHHhhccccC
Q psy2300 177 RLVDIICDKMSESLD 191 (221)
Q Consensus 177 ~i~~~~~~~~~~~~~ 191 (221)
+|.+.+.++..+...
T Consensus 164 ~l~~~i~~~~~~~~~ 178 (203)
T 1zbd_A 164 RLVDVICEKMSESLD 178 (203)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999888755543
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=218.02 Aligned_cols=174 Identities=48% Similarity=0.943 Sum_probs=159.8
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCC
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGA 94 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (221)
....++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34456889999999999999999999999998888889999899989998888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
|++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998887778999999999999888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q psy2300 175 FERLVDIICDKMSE 188 (221)
Q Consensus 175 ~~~i~~~~~~~~~~ 188 (221)
|++|.+.+.++...
T Consensus 170 ~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 170 FMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887653
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-35 Score=221.70 Aligned_cols=180 Identities=39% Similarity=0.705 Sum_probs=157.8
Q ss_pred hhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy2300 8 KWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT 87 (221)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (221)
.|-..+...++++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||+|++.+..++
T Consensus 13 ~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 92 (201)
T 2ew1_A 13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT 92 (201)
T ss_dssp ---------CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH
T ss_pred cccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 45556666778899999999999999999999999999888888898888888888888888999999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCC
Q psy2300 88 TAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 88 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
..+++.+|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 172 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE 172 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 99999999999999999999999999999999887667899999999999977677788888889988999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q psy2300 168 NVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~~~ 187 (221)
|.|++++|++|.+.+.++..
T Consensus 173 g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 173 SDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp CTTHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999887653
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.6e-35 Score=218.64 Aligned_cols=173 Identities=55% Similarity=0.965 Sum_probs=129.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999999988777888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998776668999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHhhcccc
Q psy2300 178 LVDIICDKMSESL 190 (221)
Q Consensus 178 i~~~~~~~~~~~~ 190 (221)
|.+.+.++..+..
T Consensus 165 l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 165 LARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccc
Confidence 9999987765443
No 9
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=220.81 Aligned_cols=178 Identities=43% Similarity=0.728 Sum_probs=147.7
Q ss_pred hhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchh
Q psy2300 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTA 89 (221)
Q Consensus 10 ~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 89 (221)
-....+++.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..
T Consensus 18 ~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 97 (201)
T 2hup_A 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQS 97 (201)
T ss_dssp --------CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHH
T ss_pred CCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH
Confidence 33445566778999999999999999999999999987778888888888888888888899999999999999999999
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2300 90 YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDN 168 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 168 (221)
+++.+|++|+|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..++...++...++ +++++||++|
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 999999999999999999999999999998877667899999999999987677888889999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q psy2300 169 VNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 169 ~gi~~l~~~i~~~~~~~~~ 187 (221)
.|++++|++|.+.+.++..
T Consensus 178 ~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 178 SNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp BSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999887653
No 10
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=9.5e-35 Score=215.85 Aligned_cols=175 Identities=80% Similarity=1.293 Sum_probs=158.4
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhc
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYY 91 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (221)
.......++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++
T Consensus 13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 92 (189)
T 2gf9_A 13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92 (189)
T ss_dssp -CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGG
T ss_pred CCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhc
Confidence 34455567889999999999999999999999998888888888888888888888889999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
..+|++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|+
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV 172 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999999999999998876668999999999999777777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy2300 172 KGVFERLVDIICDKM 186 (221)
Q Consensus 172 ~~l~~~i~~~~~~~~ 186 (221)
+++|++|.+.+.++.
T Consensus 173 ~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 173 KQVFERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987764
No 11
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.9e-35 Score=216.38 Aligned_cols=180 Identities=38% Similarity=0.687 Sum_probs=157.5
Q ss_pred hhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy2300 8 KWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT 87 (221)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (221)
.|-+++..+.+++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||.+.+..++
T Consensus 12 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (193)
T 2oil_A 12 SGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91 (193)
T ss_dssp --------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH
T ss_pred cccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 34555666777889999999999999999999999999887788888888888888888888999999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCC
Q psy2300 88 TAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 88 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
..++..+|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALD 171 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 99999999999999999999999999999998776667899999999999977667778888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q psy2300 168 NVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~~~ 187 (221)
|.|++++|++|.+.+.++..
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 172 STNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999887653
No 12
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=211.84 Aligned_cols=173 Identities=47% Similarity=0.878 Sum_probs=155.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
+.++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45688999999999999999999999999888888899988888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999987654 5799999999999988777888889999999999999999999999999999
Q ss_pred HHHHHHHHhhcccc
Q psy2300 177 RLVDIICDKMSESL 190 (221)
Q Consensus 177 ~i~~~~~~~~~~~~ 190 (221)
+|.+.+.+......
T Consensus 164 ~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 164 CITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999987765443
No 13
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=218.82 Aligned_cols=180 Identities=37% Similarity=0.649 Sum_probs=146.2
Q ss_pred hhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy2300 8 KWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT 87 (221)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (221)
.|.++.....++..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++
T Consensus 12 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 91 (200)
T 2o52_A 12 SGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT 91 (200)
T ss_dssp ----------CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC
T ss_pred cccccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH
Confidence 45555666677889999999999999999999999998887888888888888888888888999999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCC
Q psy2300 88 TAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 88 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
..++..+|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 171 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALT 171 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 99999999999999999999999999999998777667899999999999977677778888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q psy2300 168 NVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~~~ 187 (221)
|.|++++|++|.+.+.++..
T Consensus 172 g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 172 GENVEEAFLKCARTILNKID 191 (200)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999987764
No 14
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-36 Score=223.36 Aligned_cols=178 Identities=81% Similarity=1.277 Sum_probs=161.5
Q ss_pred hhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchh
Q psy2300 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTA 89 (221)
Q Consensus 10 ~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 89 (221)
.....+..+++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||++|++.+..++..
T Consensus 12 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 91 (191)
T 3dz8_A 12 ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTA 91 (191)
T ss_dssp CEEEETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHH
T ss_pred hccccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHH
Confidence 33444556678999999999999999999999999988888888888888888888888889999999999999999999
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2300 90 YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNV 169 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (221)
+++.+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 92 YYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENI 171 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 99999999999999999999999999999988776789999999999998777888888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhc
Q psy2300 170 NVKGVFERLVDIICDKMS 187 (221)
Q Consensus 170 gi~~l~~~i~~~~~~~~~ 187 (221)
|++++|++|.+.+.++..
T Consensus 172 gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 172 SVRQAFERLVDAICDKMS 189 (191)
T ss_dssp SHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999988764
No 15
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=217.14 Aligned_cols=169 Identities=35% Similarity=0.555 Sum_probs=149.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
+....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345689999999999999999999999988777777776554 3556677888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999887765 3589999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy2300 176 ERLVDIICDKM 186 (221)
Q Consensus 176 ~~i~~~~~~~~ 186 (221)
++|++.+.++.
T Consensus 169 ~~l~~~i~~~~ 179 (206)
T 2bov_A 169 FDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99999988764
No 16
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2e-34 Score=213.24 Aligned_cols=172 Identities=37% Similarity=0.715 Sum_probs=156.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 35678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+++|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999988777667899999999999977677788888899999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q psy2300 177 RLVDIICDKMSE 188 (221)
Q Consensus 177 ~i~~~~~~~~~~ 188 (221)
+|.+.+.++...
T Consensus 166 ~l~~~~~~~~~~ 177 (186)
T 2bme_A 166 QCARKILNKIES 177 (186)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhh
Confidence 999999887643
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.3e-34 Score=211.38 Aligned_cols=169 Identities=37% Similarity=0.757 Sum_probs=153.5
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 44567899999999999999999999999988878888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999888766789999999999997767778888999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2300 176 ERLVDIICD 184 (221)
Q Consensus 176 ~~i~~~~~~ 184 (221)
++|.+.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999987754
No 18
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=4.1e-34 Score=212.63 Aligned_cols=176 Identities=45% Similarity=0.920 Sum_probs=154.3
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeE-EEEEEeCCe---------EEEEEEEeCCCccc
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK-VKTVFRHDK---------RVKLQIWDTAGQER 82 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~ 82 (221)
|...+++..++|+|+|.+|+|||||+++|++..+...+.++.+.++. ...+..++. .+.+.+||+||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 45556788999999999999999999999999988888888888777 556666655 78999999999999
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEE
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFF 161 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 161 (221)
+..++..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999998877653 6899999999999977667778888999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhhcc
Q psy2300 162 ETSAKDNVNVKGVFERLVDIICDKMSE 188 (221)
Q Consensus 162 ~~Sa~~~~gi~~l~~~i~~~~~~~~~~ 188 (221)
++||++|.|++++|++|.+.+.++...
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999877643
No 19
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=215.65 Aligned_cols=173 Identities=47% Similarity=0.838 Sum_probs=147.2
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhcc
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYR 92 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 92 (221)
..+++.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||++|++.+..++..++.
T Consensus 18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 34556678999999999999999999999999887778888888888888888888899999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCeEEEEecCCCCCH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESL-GVEFFETSAKDNVNV 171 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi 171 (221)
.+|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++... +++++++||++|.|+
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 9999999999999999999999999888877678999999999999777777788888888874 789999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2300 172 KGVFERLVDIICDK 185 (221)
Q Consensus 172 ~~l~~~i~~~~~~~ 185 (221)
+++|++|.+.+.++
T Consensus 178 ~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 178 DEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.8e-34 Score=210.31 Aligned_cols=167 Identities=37% Similarity=0.719 Sum_probs=144.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35789999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998887655458999999999999777777888899999999999999999999999999999
Q ss_pred HHHHHHH
Q psy2300 178 LVDIICD 184 (221)
Q Consensus 178 i~~~~~~ 184 (221)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988754
No 21
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=6.5e-34 Score=209.50 Aligned_cols=168 Identities=36% Similarity=0.614 Sum_probs=152.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 35689999999999999999999999998887888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
++|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy2300 178 LVDIICDK 185 (221)
Q Consensus 178 i~~~~~~~ 185 (221)
|.+.+.+.
T Consensus 169 l~~~~~~~ 176 (181)
T 2efe_B 169 IARRLPRV 176 (181)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhc
Confidence 98866443
No 22
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.6e-34 Score=217.31 Aligned_cols=169 Identities=34% Similarity=0.652 Sum_probs=148.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCeEEEEecCCCCCHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSW----DNAQVILVGNKCDMEDERVISFERGKHLAE-SLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 172 (221)
|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999889888765432 478999999999997 34556677777777 567899999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy2300 173 GVFERLVDIICDKMS 187 (221)
Q Consensus 173 ~l~~~i~~~~~~~~~ 187 (221)
++|++|.+.+.+...
T Consensus 164 ~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 164 QAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887654
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=5.9e-34 Score=207.47 Aligned_cols=166 Identities=53% Similarity=0.938 Sum_probs=144.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
+.++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56999999999999999999999999888888888888888888888878899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|+|++++.++..+..|+..+......+.|+++|+||+|+. .+.+..++...+++.++++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999888766789999999999994 445677888889999999999999999999999999999
Q ss_pred HHHHHhh
Q psy2300 180 DIICDKM 186 (221)
Q Consensus 180 ~~~~~~~ 186 (221)
+.+.++.
T Consensus 161 ~~~~~~~ 167 (170)
T 1g16_A 161 KLIQEKI 167 (170)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9887654
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=207.84 Aligned_cols=171 Identities=45% Similarity=0.798 Sum_probs=145.1
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCC
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGA 94 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (221)
+..+..++|+|+|.+|+|||||+++|++..+. ..+.++.+.++....+..++..+.+.+||+||++.+..++..++..+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34567899999999999999999999998874 46678888888877778888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
|++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988776668999999999999877777888888999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy2300 175 FERLVDIICDKM 186 (221)
Q Consensus 175 ~~~i~~~~~~~~ 186 (221)
|++|.+.+.++.
T Consensus 165 ~~~l~~~~~~~~ 176 (180)
T 2g6b_A 165 FTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
No 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.4e-33 Score=205.48 Aligned_cols=164 Identities=35% Similarity=0.675 Sum_probs=151.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++.......++..+.+.+||+||.+.+..++..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999999988888899998888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|+|++++.++..+..|+..+.....+..|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777777888889999999999999999999999999999
Q ss_pred HHHH
Q psy2300 179 VDII 182 (221)
Q Consensus 179 ~~~~ 182 (221)
.+.+
T Consensus 164 ~~~i 167 (170)
T 1z0j_A 164 SRRI 167 (170)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 26
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-34 Score=213.41 Aligned_cols=169 Identities=34% Similarity=0.642 Sum_probs=152.2
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
+.++..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 34567899999999999999999999999987788899999888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 99999999999999999999999988766789999999999997666777888999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2300 176 ERLVDIICD 184 (221)
Q Consensus 176 ~~i~~~~~~ 184 (221)
++|.+.+.+
T Consensus 178 ~~l~~~i~~ 186 (192)
T 2fg5_A 178 QGISRQIPP 186 (192)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHHh
Confidence 999886643
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=9.5e-34 Score=206.27 Aligned_cols=164 Identities=38% Similarity=0.707 Sum_probs=150.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 35799999999999999999999999888778888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|+|++++.++..+..|+..+.....++.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766789999999999997766777888888999999999999999999999999999
Q ss_pred HHHH
Q psy2300 179 VDII 182 (221)
Q Consensus 179 ~~~~ 182 (221)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8754
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.9e-33 Score=207.52 Aligned_cols=168 Identities=28% Similarity=0.501 Sum_probs=150.8
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
.+..+.+||+|+|.+|+|||||+++|++..+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3445789999999999999999999999988888888887666 666777888889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecC-CCCCHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAK-DNVNVKG 173 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~ 173 (221)
++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++..++++++++||+ +|.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 999999999999999999998888553 34689999999999998878888899999999999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q psy2300 174 VFERLVDIICD 184 (221)
Q Consensus 174 l~~~i~~~~~~ 184 (221)
+|++|.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 29
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6.7e-34 Score=207.07 Aligned_cols=163 Identities=37% Similarity=0.657 Sum_probs=148.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
+.++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999999888888898988888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC---cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE---RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
|+|++++.++..+..|+..+......+.|+++|+||+|+... +.+..++...++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988776678999999999998654 56777888888888999999999999999999999
Q ss_pred HHHHHH
Q psy2300 177 RLVDII 182 (221)
Q Consensus 177 ~i~~~~ 182 (221)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 988754
No 30
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.5e-34 Score=217.23 Aligned_cols=181 Identities=43% Similarity=0.877 Sum_probs=153.7
Q ss_pred hhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe----------EEEEEEEeCCC
Q psy2300 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----------RVKLQIWDTAG 79 (221)
Q Consensus 10 ~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g 79 (221)
..+.....+++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.+|||||
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G 93 (217)
T 2f7s_A 14 LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG 93 (217)
T ss_dssp -------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES
T ss_pred cCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCC
Confidence 34455667788999999999999999999999999887777888887777777766655 68899999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDERVISFERGKHLAESLGV 158 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 158 (221)
++.+..++..++..+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..+++
T Consensus 94 ~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 173 (217)
T 2f7s_A 94 QERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 173 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred cHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999989887765443 5899999999999987777788889999999999
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHhhcccc
Q psy2300 159 EFFETSAKDNVNVKGVFERLVDIICDKMSESL 190 (221)
Q Consensus 159 ~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~ 190 (221)
+++++||++|.|++++|++|.+.+.++.....
T Consensus 174 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 174 PYFETSAATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp CEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999988765433
No 31
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-33 Score=211.35 Aligned_cols=173 Identities=51% Similarity=0.921 Sum_probs=151.5
Q ss_pred hhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccC
Q psy2300 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRG 93 (221)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (221)
.+.+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..
T Consensus 13 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (213)
T 3cph_A 13 NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 92 (213)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTT
T ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence 34455678999999999999999999999999888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
+|++++|+|++++.++..+..|+..+......+.|+++|+||+|+ ..+.+..++...++..++++++++||++|.|+++
T Consensus 93 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999988776568999999999999 4455667788888888999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy2300 174 VFERLVDIICDKMS 187 (221)
Q Consensus 174 l~~~i~~~~~~~~~ 187 (221)
+|++|.+.+.++..
T Consensus 172 l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 172 IFFTLAKLIQEKID 185 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887764
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.1e-33 Score=207.02 Aligned_cols=168 Identities=34% Similarity=0.486 Sum_probs=149.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
....++|+|+|.+|+|||||+++|+++.+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34689999999999999999999999888888888888777 66677788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999998886554 35799999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy2300 177 RLVDIICDKM 186 (221)
Q Consensus 177 ~i~~~~~~~~ 186 (221)
+|++.+.+..
T Consensus 162 ~l~~~~~~~~ 171 (181)
T 3t5g_A 162 RIILEAEKMD 171 (181)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 33
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=5.9e-34 Score=215.79 Aligned_cols=178 Identities=28% Similarity=0.508 Sum_probs=145.0
Q ss_pred hhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy2300 8 KWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT 87 (221)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (221)
+..+.+.+.+....+||+|+|.+|+|||||+++|+++.+...+.++.+.++ ...+..++..+.+.+|||+|++.+..++
T Consensus 14 ~~~q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 92 (214)
T 3q3j_B 14 LYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVR 92 (214)
T ss_dssp -------------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTG
T ss_pred hHhhccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHH
Confidence 345556666667899999999999999999999999998888888887766 3455667778899999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHH-HHHHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHH
Q psy2300 88 TAYYRGAMGFILMYDVTNEESFTS-IQDWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAE 154 (221)
Q Consensus 88 ~~~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~ 154 (221)
..+++.+|++|+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.+. +.+..++...++.
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK 171 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH
Confidence 999999999999999999999998 688999987765 68999999999999653 5688889999999
Q ss_pred HhCC-eEEEEecCCCCC-HHHHHHHHHHHHHHhhc
Q psy2300 155 SLGV-EFFETSAKDNVN-VKGVFERLVDIICDKMS 187 (221)
Q Consensus 155 ~~~~-~~~~~Sa~~~~g-i~~l~~~i~~~~~~~~~ 187 (221)
.+++ ++++|||++|.| ++++|++|++.+.++..
T Consensus 172 ~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 172 QLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred HcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 9999 999999999998 99999999998876553
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=9.6e-34 Score=205.98 Aligned_cols=165 Identities=36% Similarity=0.669 Sum_probs=150.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999998886654 689999999999997766777888889999999999999999999999999999
Q ss_pred HHHHHH
Q psy2300 179 VDIICD 184 (221)
Q Consensus 179 ~~~~~~ 184 (221)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988764
No 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.6e-33 Score=206.02 Aligned_cols=170 Identities=30% Similarity=0.503 Sum_probs=150.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
+....++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3456899999999999999999999999887777888776665 566677788899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHh-hCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
+++|+|++++.++..+..|+..+.. ....+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999999888743 344689999999999998777788888888998999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy2300 176 ERLVDIICDKMS 187 (221)
Q Consensus 176 ~~i~~~~~~~~~ 187 (221)
++|.+.+.+...
T Consensus 164 ~~l~~~~~~~~~ 175 (181)
T 2fn4_A 164 EQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc
Confidence 999999877653
No 36
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=213.11 Aligned_cols=171 Identities=37% Similarity=0.678 Sum_probs=139.0
Q ss_pred hhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccC
Q psy2300 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRG 93 (221)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (221)
.+...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..++..
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 44555678999999999999999999999999877888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC------CCcccCHHHHHHHHHHhCCeEEEEecCC
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME------DERVISFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
+|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+. ..+.+..++...++...+++++++||++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 9999999999999999999999999887766689999999999985 3456777888889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy2300 168 NVNVKGVFERLVDIICD 184 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~ 184 (221)
|.|++++|++|.+.+.+
T Consensus 181 g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 37
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=210.57 Aligned_cols=173 Identities=26% Similarity=0.373 Sum_probs=143.9
Q ss_pred hhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc-cchhhcc
Q psy2300 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT-ITTAYYR 92 (221)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~ 92 (221)
.+.+.+..+||+|+|.+|||||||+++|++........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 344556789999999999999999999986554334445556666666777888889999999999987664 7777889
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
.+|++|+|||++++.+|..+..|+..+..... .+.|+++|+||+|+.+.+.++.++...++..++++++++||++|.|+
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 99999999999999999999999998876542 47999999999999877778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy2300 172 KGVFERLVDIICDKM 186 (221)
Q Consensus 172 ~~l~~~i~~~~~~~~ 186 (221)
+++|++|++.+.++.
T Consensus 176 ~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 176 RELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999886543
No 38
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=203.63 Aligned_cols=168 Identities=26% Similarity=0.385 Sum_probs=137.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc--ccccchhhccCCcE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER--YRTITTAYYRGAMG 96 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~ 96 (221)
.+.++|+|+|++|+|||||+++|.+..+... .++.+.++....+.+++..+.+.+||++|++. +..+...++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 3579999999999999999999999886443 45567777777788888889999999999887 55666778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 3579999999999998877788888888888899999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy2300 176 ERLVDIICDKMS 187 (221)
Q Consensus 176 ~~i~~~~~~~~~ 187 (221)
++|.+.+.++..
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999999876653
No 39
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=211.90 Aligned_cols=176 Identities=30% Similarity=0.488 Sum_probs=144.4
Q ss_pred hhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhh
Q psy2300 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAY 90 (221)
Q Consensus 11 ~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 90 (221)
......+....+||+|+|.+|+|||||+++|++..+...+.++.+..+ ......++..+.+.+|||||++.+..++..+
T Consensus 14 ~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 92 (201)
T 3oes_A 14 LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSF 92 (201)
T ss_dssp ---------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGG
T ss_pred CCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHH
Confidence 334445556789999999999999999999999998877778777666 5555556667899999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNV 169 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (221)
++.+|++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 93 IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172 (201)
T ss_dssp TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHH
T ss_pred HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 999999999999999999999999999886653 3478999999999998778888889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhc
Q psy2300 170 NVKGVFERLVDIICDKMS 187 (221)
Q Consensus 170 gi~~l~~~i~~~~~~~~~ 187 (221)
|++++|++|.+.+.+...
T Consensus 173 ~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 173 LTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999999877653
No 40
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.3e-33 Score=203.53 Aligned_cols=165 Identities=26% Similarity=0.396 Sum_probs=133.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc-cchhhccCCcEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT-ITTAYYRGAMGFIL 99 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~vi~ 99 (221)
.+||+|+|++|+|||||+++|.+..+.....++.+.+.....+..++..+.+.+||++|++.+.. ++..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998776666666666777777788888889999999999988775 67777899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877653 489999999999998778888899999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy2300 179 VDIICDK 185 (221)
Q Consensus 179 ~~~~~~~ 185 (221)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988765
No 41
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.6e-33 Score=206.12 Aligned_cols=167 Identities=44% Similarity=0.776 Sum_probs=151.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999999988888899898888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. +.+..++...++...+++++++||++|.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999998887654 35789999999999954 456677888899999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy2300 178 LVDIICDKM 186 (221)
Q Consensus 178 i~~~~~~~~ 186 (221)
|.+.+.+..
T Consensus 172 l~~~~~~~~ 180 (195)
T 1x3s_A 172 LVEKIIQTP 180 (195)
T ss_dssp HHHHHHTSG
T ss_pred HHHHHHhhh
Confidence 999987654
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.1e-33 Score=207.79 Aligned_cols=167 Identities=32% Similarity=0.510 Sum_probs=147.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCC-eEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-KRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
...++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++ ..+.+.+||+||++.+..++..++..+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999999988777778888778888887776 578999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCC--CCCc-EEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSW--DNAQ-VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
++|+|++++.+++.+..|+..+..... .+.| +++|+||+|+.+.+.+..++...++...+++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999888866421 2445 8999999999776677788888999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2300 175 FERLVDIICDK 185 (221)
Q Consensus 175 ~~~i~~~~~~~ 185 (221)
|++|.+.+.+.
T Consensus 164 ~~~l~~~~~~~ 174 (178)
T 2hxs_A 164 FQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 43
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.8e-33 Score=207.92 Aligned_cols=169 Identities=35% Similarity=0.664 Sum_probs=147.2
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc-ccchhhccC
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR-TITTAYYRG 93 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~ 93 (221)
+.+....+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+. .++..+++.
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 3444568999999999999999999999999888888888888888888888888999999999999888 788889999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC---C
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN---V 169 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~ 169 (221)
+|++|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++| .
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 999999999999999999999999887764 468999999999999777777888889999999999999999999 9
Q ss_pred CHHHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDIIC 183 (221)
Q Consensus 170 gi~~l~~~i~~~~~ 183 (221)
|++++|++|.+.+.
T Consensus 174 ~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 174 HVEAIFMTLAHKLK 187 (189)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8.1e-33 Score=202.91 Aligned_cols=166 Identities=34% Similarity=0.639 Sum_probs=144.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
.+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45789999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhCC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCeEEEEecCCCCCHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYSW----DNAQVILVGNKCDMEDERVISFERGKHLAE-SLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 172 (221)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999989988866542 578999999999997 45567778888887 556899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2300 173 GVFERLVDIICD 184 (221)
Q Consensus 173 ~l~~~i~~~~~~ 184 (221)
++|++|++.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 45
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=207.98 Aligned_cols=165 Identities=25% Similarity=0.378 Sum_probs=141.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
....+||+|+|.+|+|||||+++|++..+...+.++.+..+ ......++..+.+.+|||+|++.+..+ ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34679999999999999999999999998888888887665 345667888899999999999988775 6689999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEec-CCCCCHHH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYS---WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSA-KDNVNVKG 173 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~ 173 (221)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.++.++...++..++++++++|| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 99999999999999999999887653 258999999999999877778888999999999999999999 89999999
Q ss_pred HHHHHHHHHHH
Q psy2300 174 VFERLVDIICD 184 (221)
Q Consensus 174 l~~~i~~~~~~ 184 (221)
+|++|++.+.+
T Consensus 176 lf~~l~~~i~~ 186 (187)
T 3c5c_A 176 VFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 46
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1e-32 Score=204.24 Aligned_cols=168 Identities=20% Similarity=0.335 Sum_probs=142.5
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhc
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYY 91 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (221)
+....+....+||+|+|.+|||||||+++|+++.+...+.++.+ .....+.+++..+.+.+|||+|++.+. ++
T Consensus 11 ~~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~ 83 (184)
T 3ihw_A 11 RENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FA 83 (184)
T ss_dssp -----CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HH
T ss_pred CCCCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----ee
Confidence 34445566799999999999999999999999998777777633 334677788888999999999998776 77
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCC-CCCcEEEEEeCCCC--CCCcccCHHHHHHHHHHhC-CeEEEEecCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDM--EDERVISFERGKHLAESLG-VEFFETSAKD 167 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 167 (221)
+.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+ ...+.+..++...++..++ +.++++||++
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 889999999999999999999999999877642 57899999999999 3456778888999999987 8999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q psy2300 168 NVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~~ 186 (221)
|.|++++|++|++.+.+++
T Consensus 164 ~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TBTHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999988765
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.9e-33 Score=205.45 Aligned_cols=164 Identities=43% Similarity=0.742 Sum_probs=149.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 56999999999999999999999998888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999988776556899999999999977777778888888999999999999999999999999998
Q ss_pred HHHH
Q psy2300 180 DIIC 183 (221)
Q Consensus 180 ~~~~ 183 (221)
+.+.
T Consensus 173 ~~~~ 176 (179)
T 2y8e_A 173 AALP 176 (179)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 7653
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-32 Score=205.17 Aligned_cols=166 Identities=35% Similarity=0.596 Sum_probs=147.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeE----------------------------
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR---------------------------- 69 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 69 (221)
.+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4567999999999999999999999999888888888888877777766554
Q ss_pred ---------EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 70 ---------VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 70 ---------~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
+.+.+||+||++.+..++..+++.+|++++|+|++++.++..+..|+..+.... +.|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence 789999999999999999999999999999999999999999999999988765 599999999999 45
Q ss_pred CcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.+.+..++...++...+++++++||++|.|++++|++|.+.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 5667788899999999999999999999999999999999988764
No 49
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.5e-32 Score=202.23 Aligned_cols=168 Identities=32% Similarity=0.557 Sum_probs=143.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999987776666664 344456667888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ +....+....++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887754 45899999999999974 455677888999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q psy2300 178 LVDIICDKMSE 188 (221)
Q Consensus 178 i~~~~~~~~~~ 188 (221)
|.+.+.+....
T Consensus 160 l~~~~~~~~~~ 170 (189)
T 4dsu_A 160 LVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99999877643
No 50
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.9e-33 Score=205.94 Aligned_cols=170 Identities=31% Similarity=0.568 Sum_probs=147.3
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhc
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYY 91 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (221)
.|...+....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++
T Consensus 9 ~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 87 (194)
T 2atx_A 9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87 (194)
T ss_dssp CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred ccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence 34555556889999999999999999999999988777777776554 34566677778999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV 158 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~ 158 (221)
..+|++++|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+..++...++..+++
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 166 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 166 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence 9999999999999999999997 6888887764 48999999999999653 35777888899999997
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 159 -EFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 159 -~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
+++++||++|.|++++|++|.+.+.
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998775
No 51
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=9.4e-33 Score=200.55 Aligned_cols=163 Identities=25% Similarity=0.396 Sum_probs=123.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.+||+|+|.+|+|||||+++|.+..+. ...++.+.++ ...+..++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999977643 3345555555 45567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999988887653 46899999999999988888888899999999999999999999999999999999
Q ss_pred HHHHHh
Q psy2300 180 DIICDK 185 (221)
Q Consensus 180 ~~~~~~ 185 (221)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988765
No 52
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.4e-32 Score=204.90 Aligned_cols=168 Identities=31% Similarity=0.565 Sum_probs=147.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
.....+||+|+|.+|+|||||+++|++..+...+.++.+..+.. .+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 44578999999999999999999999999877888888766654 56678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHhCCe-EEEEecCCCCCHH
Q psy2300 97 FILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMED--ERVISFERGKHLAESLGVE-FFETSAKDNVNVK 172 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 172 (221)
+++|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+ .+.+..++...++..+++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 56888887654 6799999999999965 3667788899999999987 9999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2300 173 GVFERLVDIICDKM 186 (221)
Q Consensus 173 ~l~~~i~~~~~~~~ 186 (221)
++|++|.+.+.++.
T Consensus 177 ~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 177 EVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887654
No 53
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.3e-33 Score=211.38 Aligned_cols=176 Identities=28% Similarity=0.478 Sum_probs=150.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe-EEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK-RVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
....+||+|+|.+|+|||||+++|++..+...+.++.+.+.........+. .+.+.+|||+|++.+..++..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 346899999999999999999999999887777788887777776655443 4889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999999998877666799999999999988777888888888888899999999999999999999
Q ss_pred HHHHHHHHhhccccCCC
Q psy2300 177 RLVDIICDKMSESLDSD 193 (221)
Q Consensus 177 ~i~~~~~~~~~~~~~~~ 193 (221)
+|.+.+.+.........
T Consensus 168 ~l~~~~~~~~~~~~~~~ 184 (218)
T 4djt_A 168 HLARIFTGRPDLIFVSN 184 (218)
T ss_dssp HHHHHHHCCTTCCBCSC
T ss_pred HHHHHHhcccccccccc
Confidence 99999987765444333
No 54
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.4e-33 Score=210.44 Aligned_cols=167 Identities=30% Similarity=0.619 Sum_probs=142.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 34679999999999999999999999988777777777554 34556677788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCcc--------cCHHHHHHHHHHhCC-eEEEEecCC
Q psy2300 98 ILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDERV--------ISFERGKHLAESLGV-EFFETSAKD 167 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (221)
|+|||++++.++..+. .|+..+.... ++.|++||+||+|+.+.+. +..++...++..++. +++++||++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999999999997 6988887764 4899999999999966543 367788888888886 999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q psy2300 168 NVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~~ 186 (221)
|.|++++|++|++.+.+..
T Consensus 164 g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 9999999999999887654
No 55
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=8.4e-33 Score=203.51 Aligned_cols=169 Identities=36% Similarity=0.655 Sum_probs=134.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH-DKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
.+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..++..+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999999888888888888888887776 456889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCC----CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HhCCeEEEEecCCCCC
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSW----DNAQVILVGNKCDMED-ERVISFERGKHLAE-SLGVEFFETSAKDNVN 170 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g 170 (221)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.. .+.+..++...++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988866532 5889999999999953 34566777888887 4567999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy2300 171 VKGVFERLVDIICDKM 186 (221)
Q Consensus 171 i~~l~~~i~~~~~~~~ 186 (221)
++++|++|.+.+.++.
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999888764
No 56
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-33 Score=207.53 Aligned_cols=166 Identities=26% Similarity=0.482 Sum_probs=141.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++. .....++..+.+.+|||||++.+..++..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45799999999999999999999999887777777765443 34556777889999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. +.+..++...++..++++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999888887776543 24789999999999965 45567788888888999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy2300 177 RLVDIICDKM 186 (221)
Q Consensus 177 ~i~~~~~~~~ 186 (221)
+|.+.+.++.
T Consensus 164 ~l~~~~~~~~ 173 (199)
T 2gf0_A 164 ELLTLETRRN 173 (199)
T ss_dssp HHHHHCSSSC
T ss_pred HHHHHHhhhh
Confidence 9988775443
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=204.38 Aligned_cols=174 Identities=27% Similarity=0.468 Sum_probs=138.1
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhc
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYY 91 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (221)
..........++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..++
T Consensus 11 ~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 89 (201)
T 2q3h_A 11 GRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCY 89 (201)
T ss_dssp ---------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGG
T ss_pred cccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhc
Confidence 34445567789999999999999999999999887777777776444 44566777888999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED------------ERVISFERGKHLAESLGV 158 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~ 158 (221)
..+|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+ .+.+..++...++..++.
T Consensus 90 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 9999999999999999999997 6988887764 4899999999999964 245677888889988887
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 159 -EFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 159 -~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
+++++||++|.|++++|++|.+.+.+...
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999998877653
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.6e-32 Score=199.31 Aligned_cols=164 Identities=35% Similarity=0.573 Sum_probs=141.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 458999999999999999999999988777777766554 3445667788899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 999999999999999988887654 3489999999999997777788888999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2300 179 VDIICD 184 (221)
Q Consensus 179 ~~~~~~ 184 (221)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.2e-32 Score=199.93 Aligned_cols=162 Identities=35% Similarity=0.626 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.++|+|+|.+|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999887777777775553 4556677788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..+ +.+++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999999888876643 458999999999999877777888888888887 7899999999999999999999
Q ss_pred HHHHH
Q psy2300 179 VDIIC 183 (221)
Q Consensus 179 ~~~~~ 183 (221)
.+.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88763
No 60
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.4e-32 Score=201.87 Aligned_cols=168 Identities=35% Similarity=0.553 Sum_probs=147.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4679999999999999999999999988777777766554 344566778889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999988886654 348999999999999776677888899999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy2300 178 LVDIICDKMS 187 (221)
Q Consensus 178 i~~~~~~~~~ 187 (221)
|.+.+.++..
T Consensus 175 l~~~i~~~~~ 184 (187)
T 2a9k_A 175 LMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999877653
No 61
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-32 Score=203.43 Aligned_cols=168 Identities=30% Similarity=0.456 Sum_probs=145.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
.....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++. ..++..++..+|+
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345679999999999999999999999988777777777555 44566778889999999999887 6778888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCC-CHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNV-NVKGV 174 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l 174 (221)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|. |++++
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 999999999999999999988886643 3589999999999997767788888999999999999999999999 99999
Q ss_pred HHHHHHHHHHhh
Q psy2300 175 FERLVDIICDKM 186 (221)
Q Consensus 175 ~~~i~~~~~~~~ 186 (221)
|++|++.+.++.
T Consensus 182 ~~~l~~~i~~~~ 193 (196)
T 2atv_A 182 FYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987764
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2.5e-32 Score=198.04 Aligned_cols=163 Identities=33% Similarity=0.561 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988777777666433 56667788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 99999999999999888876654 35899999999999977777778888889999999999999999999999999999
Q ss_pred HHHHH
Q psy2300 180 DIICD 184 (221)
Q Consensus 180 ~~~~~ 184 (221)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88754
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-32 Score=205.07 Aligned_cols=171 Identities=22% Similarity=0.331 Sum_probs=138.7
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc-ccccchhhccC
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER-YRTITTAYYRG 93 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~ 93 (221)
...+..+||+|+|.+|+|||||+++|++... .....++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 3445789999999999999999999996432 122334466666667777888889999999999876 45566677889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
+|++++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..+++++++|||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988776532 3579999999999997767777788888888889999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2300 173 GVFERLVDIICDKM 186 (221)
Q Consensus 173 ~l~~~i~~~~~~~~ 186 (221)
++|++|.+.+..+.
T Consensus 192 elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 192 ELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886544
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.1e-32 Score=202.41 Aligned_cols=165 Identities=25% Similarity=0.559 Sum_probs=142.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
.+..+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..++..+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 356799999999999999999999999887777788776653 4566677789999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CeEEEE
Q psy2300 98 ILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLG-VEFFET 163 (221)
Q Consensus 98 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 163 (221)
++|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+. +.++.++...+++.++ .+++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 57888887654 58999999999999642 4577788889998888 699999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHH
Q psy2300 164 SAK-DNVNVKGVFERLVDIICD 184 (221)
Q Consensus 164 Sa~-~~~gi~~l~~~i~~~~~~ 184 (221)
||+ ++.|++++|++|.+.+.+
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 998 689999999999988764
No 65
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=5.9e-32 Score=198.65 Aligned_cols=162 Identities=20% Similarity=0.351 Sum_probs=136.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+|+|.+|+|||||+++|+++.+.. +.++.+..+ ...+.+++..+.+.+|||+|++. ..+++.+|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 357999999999999999999999998865 667766443 56667788889999999999876 45788899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC---CCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHh-CCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS---WDNAQVILVGNKCDME--DERVISFERGKHLAESL-GVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 172 (221)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+. ..+.+..++...++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999766664432 3589999999999993 45667788888888876 5899999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy2300 173 GVFERLVDIICDKMS 187 (221)
Q Consensus 173 ~l~~~i~~~~~~~~~ 187 (221)
++|++|.+.+.+...
T Consensus 158 ~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 66
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.1e-33 Score=209.62 Aligned_cols=169 Identities=24% Similarity=0.453 Sum_probs=113.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeeEEEEEEeCCe--EEEEEEEeCCCcccccccchhhccCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD--SFTSAFVSTVGIDFKVKTVFRHDK--RVKLQIWDTAGQERYRTITTAYYRGA 94 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (221)
...++|+|+|.+|+|||||+++|++. .+...+.++.+.++....+..++. .+.+.+||+||++.+..++..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999998 777777788877777778877776 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhCC---CCCcEEEEEeCCCCCC-CcccCHHHHHHHHHHhCCeEEEEecCC-CC
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYSW---DNAQVILVGNKCDMED-ERVISFERGKHLAESLGVEFFETSAKD-NV 169 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 169 (221)
|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..++...++..++++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988764 5899999999999987 677888889999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHhhc
Q psy2300 170 NVKGVFERLVDIICDKMS 187 (221)
Q Consensus 170 gi~~l~~~i~~~~~~~~~ 187 (221)
|++++|++|.+.+.+...
T Consensus 178 gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYE 195 (208)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998876654
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4e-32 Score=204.43 Aligned_cols=165 Identities=25% Similarity=0.558 Sum_probs=142.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
.+..+||+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++..+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 45789999999999999999999999998877778877665 34566677789999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CeEEEE
Q psy2300 98 ILMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLG-VEFFET 163 (221)
Q Consensus 98 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 163 (221)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.++.++...+++.++ ++++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 67988887664 58999999999999642 4577788889998887 699999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHH
Q psy2300 164 SAK-DNVNVKGVFERLVDIICD 184 (221)
Q Consensus 164 Sa~-~~~gi~~l~~~i~~~~~~ 184 (221)
||+ +|.|++++|++|++.+++
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998765
No 68
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=217.51 Aligned_cols=169 Identities=49% Similarity=0.958 Sum_probs=143.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcE
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMG 96 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 96 (221)
..++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 97 FILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 97 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999877667899999999999987776666677888888999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2300 177 RLVDIICDK 185 (221)
Q Consensus 177 ~i~~~~~~~ 185 (221)
+|.+.+.++
T Consensus 189 ~l~~~l~~~ 197 (199)
T 3l0i_B 189 TMAAEIKKR 197 (199)
T ss_dssp HHTTTTTTT
T ss_pred HHHHHHHHh
Confidence 998776543
No 69
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1e-32 Score=209.76 Aligned_cols=172 Identities=27% Similarity=0.533 Sum_probs=151.5
Q ss_pred hhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccC
Q psy2300 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRG 93 (221)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (221)
.+......+||+|+|.+|+|||||+++|+.+.+...+.++.+.++.......++..+.+.+|||+|++.+..++..++..
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34455678999999999999999999988887777788899999999999889899999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
+|++++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.... .+...++...+++++++||++|.|+++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999987764 58999999999999764432 245567778899999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q psy2300 174 VFERLVDIICDKMSE 188 (221)
Q Consensus 174 l~~~i~~~~~~~~~~ 188 (221)
+|++|.+.+......
T Consensus 165 l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 165 PFLWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhCccc
Confidence 999999998776543
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=4.9e-31 Score=195.79 Aligned_cols=167 Identities=32% Similarity=0.542 Sum_probs=134.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
-..++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 3579999999999999999999999887766666665443 355666778889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. +....++...+++..+++++++||++|.|++++|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999998988886654 24799999999999976 456678888999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy2300 178 LVDIICDKMS 187 (221)
Q Consensus 178 i~~~~~~~~~ 187 (221)
|.+.+.+.+.
T Consensus 177 l~~~~~~~~~ 186 (190)
T 3con_A 177 LVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=3e-31 Score=198.90 Aligned_cols=164 Identities=29% Similarity=0.550 Sum_probs=143.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 46799999999999999999999999987777777776654 34566778889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEe
Q psy2300 99 LMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETS 164 (221)
Q Consensus 99 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 164 (221)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... +.+..++...++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 56888887654 58999999999999764 44677788888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy2300 165 AKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~ 184 (221)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987753
No 72
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.7e-31 Score=197.32 Aligned_cols=163 Identities=28% Similarity=0.565 Sum_probs=141.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 569999999999999999999999988777777776444 4455678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEec
Q psy2300 100 MYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETSA 165 (221)
Q Consensus 100 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 165 (221)
|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+..++...++...+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999997 5888887764 48999999999998653 45677788888888887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy2300 166 KDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 166 ~~~~gi~~l~~~i~~~~~~ 184 (221)
++|.|++++|++|.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=202.20 Aligned_cols=166 Identities=30% Similarity=0.605 Sum_probs=123.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3579999999999999999999999888776677665443 455667888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhCC-eEEEEe
Q psy2300 99 LMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLGV-EFFETS 164 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 164 (221)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.... .++.++...+++..++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999997 5888887654 579999999999996543 5667788888888897 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhh
Q psy2300 165 AKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~~~ 186 (221)
|++|.|++++|++|.+.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.9e-32 Score=197.11 Aligned_cols=163 Identities=28% Similarity=0.490 Sum_probs=139.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+|+|.+|+|||||+++|++..+...+.++.+.++. .....++..+.+.+||+||++.+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999998877777777665543 344567777899999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFER 177 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (221)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+...+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888888776543 247999999999999776777778888888889999999999999999999999
Q ss_pred HHHHHH
Q psy2300 178 LVDIIC 183 (221)
Q Consensus 178 i~~~~~ 183 (221)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987654
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-31 Score=198.66 Aligned_cols=166 Identities=28% Similarity=0.540 Sum_probs=137.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+|+|.+|+|||||+++|++..+...+.++.+..+.. .+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 357899999999999999999999998877777777655543 3567778889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEe
Q psy2300 99 LMYDVTNEESFTSI-QDWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETS 164 (221)
Q Consensus 99 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 164 (221)
+|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+. +.+..++...++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 56888887654 58999999999999654 34667778888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhh
Q psy2300 165 AKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~~~ 186 (221)
|++|.|++++|++|.+.+.+..
T Consensus 181 A~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887543
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=9.7e-31 Score=189.33 Aligned_cols=162 Identities=32% Similarity=0.547 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 100 (221)
.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 48999999999999999999999987766666665433 45566677888999999999999998899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 101 YDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. +....++...+++.++++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998886654 24799999999999976 44567788889999999999999999999999999999
Q ss_pred HHHHH
Q psy2300 180 DIICD 184 (221)
Q Consensus 180 ~~~~~ 184 (221)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88754
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=5.3e-32 Score=201.78 Aligned_cols=167 Identities=19% Similarity=0.298 Sum_probs=136.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc-----------cccceeeeeEEEEE-EeCCeEEEEEEEeCCCccccc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-----------FVSTVGIDFKVKTV-FRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 84 (221)
..+..+||+|+|.+|+|||||++.+.+. +... +.++.+.++....+ ..++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4467899999999999999999766554 3333 23455555554444 556778899999999999999
Q ss_pred ccchhhccCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q psy2300 85 TITTAYYRGAMGFILMYDVT------NEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV 158 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 158 (221)
.++..+++.+|++|+|||++ +..++..+..|+..+. ....+.|+++|+||+|+.+. +..++...++...++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence 99999999999999999999 4567777777777763 23468999999999999664 677888899998998
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 159 -EFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 159 -~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
+++++||++|.|++++|++|.+.+.++..
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988764
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=2.1e-31 Score=199.02 Aligned_cols=169 Identities=15% Similarity=0.239 Sum_probs=129.6
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhh
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAY 90 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 90 (221)
.....+..+.++|+|+|.+|||||||+++|++..+.. .+.++.+..... +. ...+.+.+|||+|++.+..++..+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--FE--KGRVAFTVFDMGGAKKFRGLWETY 83 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--EE--ETTEEEEEEEECCSGGGGGGGGGG
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHH
Confidence 3445666789999999999999999999999999877 677877744433 32 344789999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC--------CCCCcEEEEEeCCCCCCCcccCHHHHHH------HHHHh
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYS--------WDNAQVILVGNKCDMEDERVISFERGKH------LAESL 156 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~--------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------~~~~~ 156 (221)
++.+|++|+|||++++.+|..+..|+..+.... ..+.|++||+||+|+.+... .++... ++...
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDH 161 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTS
T ss_pred HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCC
Confidence 999999999999999999999988888875531 12799999999999976532 122111 11335
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 157 GVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
+++++++||++|.|++++|++|.+.+.++.
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 162 PFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999988764
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=4.6e-32 Score=199.78 Aligned_cols=163 Identities=34% Similarity=0.675 Sum_probs=126.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 35699999999999999999999999887777776654433 22334556678899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCcc----------cCHHHHHHHHHHhCC-eEEEEecC
Q psy2300 99 LMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDERV----------ISFERGKHLAESLGV-EFFETSAK 166 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 166 (221)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+. +..++...++..++. +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999997 5888887764 4899999999999866544 367788888888896 99999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy2300 167 DNVNVKGVFERLVDIIC 183 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~~~ 183 (221)
+|.|++++|++|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=1.5e-30 Score=193.83 Aligned_cols=167 Identities=23% Similarity=0.367 Sum_probs=135.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc-ccccchhhccCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS--FTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER-YRTITTAYYRGAM 95 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d 95 (221)
.+.+||+|+|.+|||||||+++|++.. +... .++.+.++....+.+++..+.+.+|||+|.+. +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 3232 34456666667777888888999999999776 5556777888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
++++|||++++.+|+.+..|...+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988776543 357999999999999766667777777888888899999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy2300 175 FERLVDIICDKM 186 (221)
Q Consensus 175 ~~~i~~~~~~~~ 186 (221)
|++|.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=5.2e-31 Score=198.11 Aligned_cols=162 Identities=28% Similarity=0.568 Sum_probs=137.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...+||+|+|.+|+|||||+++|+.+.+...+.++.+. .....+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 35799999999999999999999999887777777653 33455666777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCcc------------cCHHHHHHHHHHhCC-eEEEEe
Q psy2300 99 LMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDERV------------ISFERGKHLAESLGV-EFFETS 164 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~~~S 164 (221)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+... +..++...++...+. +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999997 6888887765 6899999999999865433 667788888888886 699999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy2300 165 AKDNVNVKGVFERLVDII 182 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~ 182 (221)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=7.7e-30 Score=190.92 Aligned_cols=168 Identities=38% Similarity=0.740 Sum_probs=149.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
++.++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56899999999999999999999999887778888888888888888888899999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 178 (221)
+|+|+.+..++.++..|+..+......+.|+++++||+|+.+.+....+++..++...++.++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998888888766554678999999999997766677788888999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy2300 179 VDIICDKM 186 (221)
Q Consensus 179 ~~~~~~~~ 186 (221)
.+.+.+..
T Consensus 163 ~~~~~~~~ 170 (199)
T 2f9l_A 163 LTEIYRIV 170 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=192.27 Aligned_cols=173 Identities=16% Similarity=0.270 Sum_probs=128.6
Q ss_pred cchhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy2300 6 ETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84 (221)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (221)
..++-.+.........++|+|+|.+|+|||||+++|++.. +...+.++.+ .....+..++ +.+.+|||+|++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 6 HHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYR 81 (190)
T ss_dssp ---------------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTG
T ss_pred cccccccCcccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHH
Confidence 3344444455555678999999999999999999999887 5556666666 3344444443 689999999999999
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----Hh
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW---DNAQVILVGNKCDMEDERVISFERGKHLAE-----SL 156 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~ 156 (221)
.++..++..+|++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...++...+.. ..
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 159 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDK 159 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSS
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCC
Confidence 9999999999999999999999999999888888766532 48999999999999653 34455555543 23
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 157 GVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
+++++++||++|.|++++|++|.+.+.+
T Consensus 160 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 160 PWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 5689999999999999999999887643
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.9e-31 Score=193.73 Aligned_cols=173 Identities=16% Similarity=0.271 Sum_probs=124.8
Q ss_pred CCcCcchhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 2 AGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
.+....++-....+.+....++|+|+|.+|+|||||+++|++..+ ..+.++.+.... .+..++ +.+.+||++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~ 76 (181)
T 2h17_A 2 GSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQE 76 (181)
T ss_dssp -------------------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSG
T ss_pred CcccccccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCH
Confidence 344455555666666667899999999999999999999999987 556666665443 343443 789999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----H
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAE-----S 155 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~ 155 (221)
.+..++..++..+|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++...... .
T Consensus 77 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~ 154 (181)
T 2h17_A 77 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKD 154 (181)
T ss_dssp GGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCS
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccC
Confidence 999999999999999999999999999999988887775532 358999999999999653 23333333321 2
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 156 LGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
.+++++++||++|.|++++|++|.+.
T Consensus 155 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 155 HQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CceEEEEccCCCCcCHHHHHHHHHhh
Confidence 34589999999999999999998754
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=4.9e-31 Score=195.70 Aligned_cols=167 Identities=20% Similarity=0.365 Sum_probs=129.1
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhc
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYY 91 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (221)
..........++|+|+|.+|+|||||+++|++..+...+.++.+.++.. +.. ..+.+.+||+||++.+..++..++
T Consensus 13 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~ 88 (188)
T 1zd9_A 13 GLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYC 88 (188)
T ss_dssp ------CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHH
T ss_pred cccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHH
Confidence 3344444568999999999999999999999998877777887766553 322 347899999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEec
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSA 165 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 165 (221)
..+|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA 166 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISC 166 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEEC
Confidence 99999999999999999999988888775432 2589999999999996542 2222222111 12457999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy2300 166 KDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 166 ~~~~gi~~l~~~i~~~~~~ 184 (221)
++|.|++++|++|.+.+.+
T Consensus 167 ~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 167 KEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTCTTHHHHHHHHHHTCC-
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999886643
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=2.7e-30 Score=188.32 Aligned_cols=159 Identities=22% Similarity=0.356 Sum_probs=126.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|.+..+. .+.++.+... ..+..+ .+.+.+||+||++.+..++..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45699999999999999999999998864 4556665443 344444 468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHL-----AESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... ..+.... +...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999988887765432 25899999999999966432 2222221 22235689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2300 173 GVFERLVDIICD 184 (221)
Q Consensus 173 ~l~~~i~~~~~~ 184 (221)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 87
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=4.5e-29 Score=185.68 Aligned_cols=168 Identities=39% Similarity=0.773 Sum_probs=149.7
Q ss_pred hcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCC
Q psy2300 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGA 94 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (221)
..+.++.++|+|+|++|||||||+++|++..++..+.++.+.++....+.+++..+.+.+||++|.+.+..++..++..+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 34556789999999999999999999999998888889999888888888898888899999999999888888899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 95 MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 95 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
+++++|+|+.+..+++++..|+..+........|+++++||+|+.+.+....++++.++...++.++++|++++.|++++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998888888776655457899999999999776667778888999999999999999999999999
Q ss_pred HHHHHHHH
Q psy2300 175 FERLVDII 182 (221)
Q Consensus 175 ~~~i~~~~ 182 (221)
|++|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=8.9e-31 Score=189.71 Aligned_cols=156 Identities=19% Similarity=0.377 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 101 (221)
+||+|+|++|+|||||+++|+++.+.. +.||.+ .....+.. ..+.+.+||+||++.+..++..++..+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888753 456655 33333333 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCeEEEEecCCCCCHHHHH
Q psy2300 102 DVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLA-----ESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 102 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888877543 23589999999999996542 222222211 1124579999999999999999
Q ss_pred HHHHHHHHH
Q psy2300 176 ERLVDIICD 184 (221)
Q Consensus 176 ~~i~~~~~~ 184 (221)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987754
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=7e-30 Score=191.12 Aligned_cols=156 Identities=21% Similarity=0.292 Sum_probs=121.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|++|||||||+++|.++.+. .+.++.+.+. ..+..++ +.+.+|||||++.+..++..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999988763 4566666543 3444554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----------------hCCeE
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAES-----------------LGVEF 160 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 160 (221)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ .++.++...++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999988887553 235899999999999965 4566666666542 23579
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy2300 161 FETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 161 ~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
++|||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.1e-29 Score=186.36 Aligned_cols=161 Identities=22% Similarity=0.360 Sum_probs=129.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|++|+|||||+++|++.. ...+.++.+... ..+..+ .+.+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888 566777777443 344444 368999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999998888777553 23579999999999996643 2333333222 235689999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2300 173 GVFERLVDIICDKM 186 (221)
Q Consensus 173 ~l~~~i~~~~~~~~ 186 (221)
++|++|.+.+.+++
T Consensus 169 ~l~~~l~~~i~~~~ 182 (186)
T 1ksh_A 169 PGIDWLLDDISSRV 182 (186)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887653
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=2.1e-29 Score=187.29 Aligned_cols=155 Identities=19% Similarity=0.276 Sum_probs=126.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+++|++|+|||||+++|.++.+. .+.++.+.+ ...+..++ +.+.+|||||++.+..++..+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999998864 456666654 34455554 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------hCCeEEEEecC
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAES------------LGVEFFETSAK 166 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~ 166 (221)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .++.++..++... .+++++++||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 999999999999999888875532 35899999999999965 3455666555432 34579999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy2300 167 DNVNVKGVFERLVDI 181 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~ 181 (221)
+|.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998753
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.6e-30 Score=192.56 Aligned_cols=158 Identities=21% Similarity=0.365 Sum_probs=119.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|++|+|||||+++|+.+.+. .+.+|.+ +....+.. ..+.+.+||+||++.+..++..++..+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988764 3455555 33333433 3378999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 999999999999998888877543 23579999999999996542 2222222111 123579999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 173 GVFERLVDIIC 183 (221)
Q Consensus 173 ~l~~~i~~~~~ 183 (221)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=7.1e-30 Score=190.68 Aligned_cols=171 Identities=20% Similarity=0.226 Sum_probs=121.3
Q ss_pred chhhhhhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeee--EEEEEEeC-CeEEEEEEEeCCCcccc
Q psy2300 7 TKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDF--KVKTVFRH-DKRVKLQIWDTAGQERY 83 (221)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~D~~g~~~~ 83 (221)
.+...+..+.+.+..+||+|+|.+|||||||++++.+.. ... ++.+.+. ......+. +..+.+.+||++|++.+
T Consensus 6 ~~~~~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (196)
T 3llu_A 6 HHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82 (196)
T ss_dssp --------------CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT
T ss_pred cccCCCCCCcccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHH
Confidence 333445566677789999999999999999999887753 233 3333332 23333332 45578999999999998
Q ss_pred cccc---hhhccCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC-------CcccCHHHHHH
Q psy2300 84 RTIT---TAYYRGAMGFILMYDVTNE--ESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED-------ERVISFERGKH 151 (221)
Q Consensus 84 ~~~~---~~~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~ 151 (221)
.... ..+++.+|++|+|||++++ +++..+..|+..+... ..+.|+++|+||+|+.+ .+.+..++...
T Consensus 83 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~ 161 (196)
T 3llu_A 83 FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDD 161 (196)
T ss_dssp TCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHH
Confidence 7766 7899999999999999997 6677777777776433 25899999999999854 23444555667
Q ss_pred HHH----HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 152 LAE----SLGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 152 ~~~----~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
++. ..+++++++||++ .|++++|+.|++.+
T Consensus 162 ~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 162 LADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 777 5678999999999 99999999998764
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.7e-29 Score=186.03 Aligned_cols=158 Identities=17% Similarity=0.317 Sum_probs=124.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|+++.+. .+.++.+.+. ..+..++ +.+.+|||||++.+..++..++..+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988875 5666666443 3343443 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999888876542 258999999999999653 23344443332 235689999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 173 GVFERLVDIIC 183 (221)
Q Consensus 173 ~l~~~i~~~~~ 183 (221)
++|++|.+.+.
T Consensus 167 ~l~~~l~~~~~ 177 (187)
T 1zj6_A 167 QGLEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=5.4e-30 Score=190.08 Aligned_cols=161 Identities=19% Similarity=0.310 Sum_probs=126.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|++|+|||||+++|..+.+. .+.++.+.. ...+..+ .+.+.+|||||++.+..++..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 46799999999999999999999988764 355665533 3344444 468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLA-----ESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988887765432 35899999999999966432 22222211 2234579999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2300 173 GVFERLVDIICDKM 186 (221)
Q Consensus 173 ~l~~~i~~~~~~~~ 186 (221)
++|++|.+.+.++.
T Consensus 173 ~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 173 EGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886643
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=3e-29 Score=185.02 Aligned_cols=160 Identities=21% Similarity=0.301 Sum_probs=124.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|++|+|||||+++|.+..+ ..+.++.+.+ ...+..+ .+.+.+||++|++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4679999999999999999999998864 3455666643 3344444 478999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+... .++...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888776432 235799999999999976532 233322211 124579999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2300 173 GVFERLVDIICDK 185 (221)
Q Consensus 173 ~l~~~i~~~~~~~ 185 (221)
++|++|.+.+.++
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999998876543
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=2e-28 Score=196.62 Aligned_cols=164 Identities=27% Similarity=0.577 Sum_probs=142.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+++|.+|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3569999999999999999999999988777777776444 445667788889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-eEEEEe
Q psy2300 99 LMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDE------------RVISFERGKHLAESLGV-EFFETS 164 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 164 (221)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 5888887654 48999999999998543 45777888899999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy2300 165 AKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~~~ 184 (221)
|++|.|++++|++|.+.+.+
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=5.8e-30 Score=189.32 Aligned_cols=164 Identities=24% Similarity=0.414 Sum_probs=122.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeeEEEEEEe---CCeEEEEEEEeCCCcccccccchhhccCCc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD--SFTSAFVSTVGIDFKVKTVFR---HDKRVKLQIWDTAGQERYRTITTAYYRGAM 95 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (221)
.+||+|+|++|||||||+++|++. .+...+.++.+.++....+.. ++..+.+.+|||+|++.+..++..++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 455556777777766555443 234678999999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHhCCe----EEEEecCC
Q psy2300 96 GFILMYDVTNE-ESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS---FERGKHLAESLGVE----FFETSAKD 167 (221)
Q Consensus 96 ~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 167 (221)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+.+.+. .+....++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 57889989998886653 479999999999997654432 22334555556775 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHh
Q psy2300 168 NV-NVKGVFERLVDIICDK 185 (221)
Q Consensus 168 ~~-gi~~l~~~i~~~~~~~ 185 (221)
|. |++++++.|.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 9999999988877543
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=7.8e-29 Score=182.64 Aligned_cols=160 Identities=21% Similarity=0.360 Sum_probs=124.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|++|+|||||+++++++.+ ..+.++.+... ..+..++ +.+.+||+||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998876 55566666433 3444443 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----hCCeEEEEecCCCCCHH
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAES-----LGVEFFETSAKDNVNVK 172 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 172 (221)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++....... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888876543 368999999999999654 233343333221 23479999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2300 173 GVFERLVDIICDK 185 (221)
Q Consensus 173 ~l~~~i~~~~~~~ 185 (221)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.7e-31 Score=199.48 Aligned_cols=162 Identities=28% Similarity=0.605 Sum_probs=135.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999999887766666665433 334455666788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhCC-eEEEEe
Q psy2300 99 LMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDER------------VISFERGKHLAESLGV-EFFETS 164 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 164 (221)
+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...+++..++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999987 6877776543 379999999999996542 4555667777777887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy2300 165 AKDNVNVKGVFERLVDII 182 (221)
Q Consensus 165 a~~~~gi~~l~~~i~~~~ 182 (221)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.3e-29 Score=193.86 Aligned_cols=167 Identities=26% Similarity=0.395 Sum_probs=123.9
Q ss_pred hcCCCeeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCccccce-eeeeEEEEE--------------EeCC
Q psy2300 15 DQNFDYMFKLLIIGNS---------SVGKTSFLFRYAD---DSFTSAFVSTV-GIDFKVKTV--------------FRHD 67 (221)
Q Consensus 15 ~~~~~~~~~i~vvG~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~ 67 (221)
.......+||+|+|.+ |||||||+++|++ ..+...+.++. +.++....+ .+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3445678999999999 9999999999999 45555555554 333221111 1345
Q ss_pred eEEEEEEEe-----------------------CCCcccccccchhhcc---------------------CCcEEEEEEEC
Q psy2300 68 KRVKLQIWD-----------------------TAGQERYRTITTAYYR---------------------GAMGFILMYDV 103 (221)
Q Consensus 68 ~~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~vi~v~d~ 103 (221)
..+.+.+|| ++|++.+..++..++. ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 668899999 6677777777777776 79999999999
Q ss_pred CCh--hhHHHHHHHHHHHHhh-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 104 TNE--ESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMEDERVISFERGKHLAES-LGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 104 ~~~--~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
+++ .+++.+..|+..+... ...+.|++||+||+|+...+.+ ++...++.. .+++++++||++|.|++++|++|.
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 998 9999999999888654 2357999999999999654443 566677765 478999999999999999999998
Q ss_pred HHHH
Q psy2300 180 DIIC 183 (221)
Q Consensus 180 ~~~~ 183 (221)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8763
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=2.8e-27 Score=180.65 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=116.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc------ccc---cccchh
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ------ERY---RTITTA 89 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~------~~~---~~~~~~ 89 (221)
+..++|+|+|.+|+|||||+++|++..+.....+..+.+......... ...+.+|||||. +.. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 467999999999999999999999987643322222223333333333 367999999998 321 111234
Q ss_pred hccCCcEEEEEEECCChhhHHH--HHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHhC--CeEEE
Q psy2300 90 YYRGAMGFILMYDVTNEESFTS--IQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFE---RGKHLAESLG--VEFFE 162 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 162 (221)
++..+|++|+|+|++++.++.. ...|+..+... ..+.|+++|+||+|+.+.+.+..+ ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5788899999999999877642 23455555443 247999999999999776666543 4556666666 79999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 163 TSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
+||++|.|++++|++|.+.+.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876643
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=8.7e-28 Score=174.57 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=113.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc------cchhhcc--
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT------ITTAYYR-- 92 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-- 92 (221)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+.. +...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998876555445444444455555544 5799999999887642 3345554
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
.+|++++|+|+++.+. ...|+..+... +.|+++|+||+|+...+.+.. +...++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999988543 34466666553 799999999999854333332 3566777788999999999999999
Q ss_pred HHHHHHHHHH
Q psy2300 173 GVFERLVDII 182 (221)
Q Consensus 173 ~l~~~i~~~~ 182 (221)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=4.5e-27 Score=172.33 Aligned_cols=160 Identities=20% Similarity=0.187 Sum_probs=120.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 98 (221)
...++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++. .+.+|||||++.+..++..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45789999999999999999999999887766666665555556666554 5789999999999999988999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-------C--CeEEEEecCCCC
Q psy2300 99 LMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESL-------G--VEFFETSAKDNV 169 (221)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~ 169 (221)
+|+|++++....... ++..+.. .+.|+++|+||+|+.+.. .++........ + ++++++||++|.
T Consensus 84 ~v~d~~~~~~~~~~~-~l~~~~~---~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE-AINHAKA---ANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHHHH-HHHHHGG---GSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHHHH-HHHHHHh---CCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 999998843222221 2222222 479999999999996532 22333222222 1 479999999999
Q ss_pred CHHHHHHHHHHHHHHhhc
Q psy2300 170 NVKGVFERLVDIICDKMS 187 (221)
Q Consensus 170 gi~~l~~~i~~~~~~~~~ 187 (221)
|++++|++|.+.+.....
T Consensus 157 gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 157 GLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHhhhhhcc
Confidence 999999999998776543
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.5e-28 Score=194.46 Aligned_cols=158 Identities=18% Similarity=0.344 Sum_probs=118.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+|+|.+|+|||||+++|.+..+... .+|.+..+ ..+.. ..+.+.||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 468999999999999999999998886433 34444333 33333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHh-hCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKT-YSWDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 173 (221)
|||++++.++..+..|+..+.. ....+.|++||+||+|+.+... .++...... ..+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 9999999999999887666543 2235899999999999976432 222222221 1235799999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 174 VFERLVDIICD 184 (221)
Q Consensus 174 l~~~i~~~~~~ 184 (221)
+|++|.+.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=7.8e-27 Score=176.33 Aligned_cols=160 Identities=17% Similarity=0.239 Sum_probs=112.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe-EEEEEEEeCCCcccccc-cchhhccCCcE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK-RVKLQIWDTAGQERYRT-ITTAYYRGAMG 96 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~ 96 (221)
...++|+|+|++|+|||||+++|++..+...+.+ .+.... .+.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 3569999999999999999999999987665543 333333 3545543 57899999999998887 78888999999
Q ss_pred EEEEEECCChh-hHHHHHH-HHHHHHh--hCCCCCcEEEEEeCCCCCCCcccCH--HHHHHHHH----------------
Q psy2300 97 FILMYDVTNEE-SFTSIQD-WITQIKT--YSWDNAQVILVGNKCDMEDERVISF--ERGKHLAE---------------- 154 (221)
Q Consensus 97 vi~v~d~~~~~-s~~~~~~-~~~~l~~--~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~---------------- 154 (221)
+++|+|+++.. ++..... |...+.. ....+.|+++|+||+|+........ +.......
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999853 4555555 4444433 1235799999999999976433211 11111111
Q ss_pred -----------------Hh--CCeEEEEecCCC------CCHHHHHHHHHHH
Q psy2300 155 -----------------SL--GVEFFETSAKDN------VNVKGVFERLVDI 181 (221)
Q Consensus 155 -----------------~~--~~~~~~~Sa~~~------~gi~~l~~~i~~~ 181 (221)
.. ++.|++|||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 01 557999999999 9999999999875
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2.7e-27 Score=176.13 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=113.6
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC----------ccc
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG----------QER 82 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~ 82 (221)
+.+.+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.+........+. .+.+||||| ++.
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~ 91 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREA 91 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHH
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHH
Confidence 4455666789999999999999999999999886666677777666665555543 589999999 666
Q ss_pred ccccchhhccCC---cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HHHHh
Q psy2300 83 YRTITTAYYRGA---MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISF--ERGKH-LAESL 156 (221)
Q Consensus 83 ~~~~~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~ 156 (221)
+..++..++..+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+...+.+.. ++... +....
T Consensus 92 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 92 WGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccC
Confidence 777777777766 9999999999877766542 2233333 3799999999999976544332 22222 22223
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 157 GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
+.+++++||++|.|++++|++|.+.+
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998865
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1e-27 Score=202.67 Aligned_cols=162 Identities=20% Similarity=0.342 Sum_probs=125.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 97 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 97 (221)
....++|+|+|.+|+|||||+++|++..+. .+.+|.+..+.. +.. ..+.+.+|||+|++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE--EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 345799999999999999999999998853 455666655443 322 447899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCeEEEEecCCCCCH
Q psy2300 98 ILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMEDERVISFERGKHLAE-----SLGVEFFETSAKDNVNV 171 (221)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 171 (221)
|+|||++++.++..+..|+..+.... ..+.|++||+||+|+.+.. ...+...... ..+++++++||++|.|+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 99999999999999998888775432 3589999999999996542 2233322211 12346999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy2300 172 KGVFERLVDIICDKM 186 (221)
Q Consensus 172 ~~l~~~i~~~~~~~~ 186 (221)
+++|++|.+.+.++.
T Consensus 472 ~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 472 YEGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998775544
No 109
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=1.5e-26 Score=184.08 Aligned_cols=159 Identities=19% Similarity=0.297 Sum_probs=125.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc-----cccchhhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFT---SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY-----RTITTAYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 91 (221)
..+||+|+|.+|+|||||+++|+++... ..+.+|.+..+.. +.+++ .+.+.+||+||++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999887322 1344555544443 33333 578999999999988 67888899
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCC--Ccc----cCHHHHHHHHHHhC---CeE
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMED--ERV----ISFERGKHLAESLG---VEF 160 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 160 (221)
+.+|++|+|+|++++.+++++..|...+.... .++.|+++|+||+|+.+ .+. +..++...++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999977765553321 36899999999999976 333 45577788888887 799
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q psy2300 161 FETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 161 ~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
+++||++ .|+.++|..+++.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 89999998887654
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.6e-26 Score=170.97 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=121.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc------ccchhhcc-
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR------TITTAYYR- 92 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 92 (221)
..++|+|+|++|+|||||+++|++..+.....++.+.+.....+..++ ..+.+|||||.+.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998775555555555555555555543 679999999988764 33445554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 93 -GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 93 -~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.....+. .....++...+++++++||++|.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999875 4555667766655 379999999999985443333 3456777788899999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy2300 172 KGVFERLVDIICDKM 186 (221)
Q Consensus 172 ~~l~~~i~~~~~~~~ 186 (221)
+++|++|.+.+.+..
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998876543
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=9.5e-27 Score=172.33 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC-----------cccccccchhh
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG-----------QERYRTITTAY 90 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 90 (221)
++|+|+|.+|+|||||+++|++..+...+.++.+ ......... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999987666555443 333333333 588999999 56666667777
Q ss_pred ccC-CcEEEEEEECCChhhHHHH-HHHHHH---------HHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCe
Q psy2300 91 YRG-AMGFILMYDVTNEESFTSI-QDWITQ---------IKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVE 159 (221)
Q Consensus 91 ~~~-~d~vi~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 159 (221)
++. ++++++|+++.|..++..+ ..|... +......+.|+++|+||+|+.... .+....++..++.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 766 7766666666666777665 345432 111112479999999999997654 45677777877764
Q ss_pred -------EEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 160 -------FFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 160 -------~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
++++||++|.|++++|++|.+.+.+...
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876543
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=5.9e-26 Score=180.64 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=124.6
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe-EEEEEEEeCCCccccc----------
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK-RVKLQIWDTAGQERYR---------- 84 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~---------- 84 (221)
.+..+.-.|+++|.+|||||||+|+|++..+.. ..+..+++........... ..++.||||||.....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i-~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI-ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc-cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 345678999999999999999999999988642 2233333333332222222 5789999999975433
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CeEEE
Q psy2300 85 TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG--VEFFE 162 (221)
Q Consensus 85 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~ 162 (221)
..+..++..+|++++|+|++++.++.+...|+..+... +.|+++|+||+|+........+....+....+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 45567788999999999999988888877778877764 79999999999997444445566667777765 68999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy2300 163 TSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 163 ~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
+||++|.|++++|++|.+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred EeCCCCCCHHHHHHHHHHhCc
Confidence 999999999999999988763
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=8.2e-26 Score=175.45 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=117.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc------hhhc-
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT------TAYY- 91 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~- 91 (221)
...++|+|+|.+|||||||+++|++..+.....+ +++.......+......+.+|||||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p--g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP--GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT--TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3579999999999999999999999875444334 334443333333334689999999988766432 4455
Q ss_pred -cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2300 92 -RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVN 170 (221)
Q Consensus 92 -~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (221)
..+|++++|+|+++.++.. .|...+... +.|+++++||+|+...+.+.. +...++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999865432 355555443 799999999999854443332 35677888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIIC 183 (221)
Q Consensus 171 i~~l~~~i~~~~~ 183 (221)
++++|++|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=8.3e-27 Score=198.51 Aligned_cols=165 Identities=21% Similarity=0.325 Sum_probs=125.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEE------EEe--CCeEEEEEEEeCCCcccccccch
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT------VFR--HDKRVKLQIWDTAGQERYRTITT 88 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~ 88 (221)
.....+||+|+|.+|||||||+++|++..+...+.++.+.++.... +.. ++..+.+.+||+||++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3457899999999999999999999999988778888877766542 112 23357899999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC
Q psy2300 89 AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN 168 (221)
Q Consensus 89 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (221)
.+++.+|++|+|+|+++. +....|+..+.... .+.|+++|+||+|+...+.+..++...++...+.+++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999998765 44566888877764 46999999999999887777888888888888899999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2300 169 VNVKGVFERLVDIICDK 185 (221)
Q Consensus 169 ~gi~~l~~~i~~~~~~~ 185 (221)
.|+++++++|.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999887654
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=6.6e-26 Score=163.39 Aligned_cols=150 Identities=21% Similarity=0.215 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc-------ccccchhhccC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER-------YRTITTAYYRG 93 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 93 (221)
+||+++|++|+|||||+++|.+..+. ....+..+.......+..++ ..+.+||+||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988743 22223333334444555554 3688999999876 23445567899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVK 172 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 172 (221)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. ++...++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998644322 122233333 379999999999996542 2233344 5677 89999999999999
Q ss_pred HHHHHHHHHH
Q psy2300 173 GVFERLVDII 182 (221)
Q Consensus 173 ~l~~~i~~~~ 182 (221)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 116
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=5.1e-27 Score=185.72 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=117.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc---cchhhccCCcE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTS---AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT---ITTAYYRGAMG 96 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 96 (221)
||+++|..|+|||||++++.++.++. .+.+|.+..+.. + + ..+.+++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999888665433 245666665543 2 2 347899999999999964 35789999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHHH----hCCeEEEE
Q psy2300 97 FILMYDVTNE--ESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE-------RVISFERGKHLAES----LGVEFFET 163 (221)
Q Consensus 97 vi~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 163 (221)
+|+|||++++ +.+..+..|+..+... .++.|+++++||+|+... +.+..++.+++++. +++.+++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3333344445544443 368999999999999764 34555666667664 57899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHh
Q psy2300 164 SAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
||++ .+|.+.|..|++.+.++
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTT
T ss_pred ccCC-CcHHHHHHHHHHHHHhh
Confidence 9998 58999999998876543
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=8.8e-26 Score=167.70 Aligned_cols=164 Identities=15% Similarity=0.205 Sum_probs=117.8
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC----------ccc
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG----------QER 82 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~ 82 (221)
+.+.+....++|+|+|.+|+|||||+++|++..+ ..+.++.+.+........+. .+.+||||| ++.
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~ 90 (195)
T 3pqc_A 15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERML 90 (195)
T ss_dssp TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHH
T ss_pred hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHH
Confidence 3445556789999999999999999999999873 44556666666555544433 477999999 556
Q ss_pred ccccchhhccCC---cEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHhC
Q psy2300 83 YRTITTAYYRGA---MGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV--ISFERGKHLAESLG 157 (221)
Q Consensus 83 ~~~~~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~ 157 (221)
+..++..++..+ |++++|+|+++..+.... .+...+... +.|+++|+||+|+.+... ...++...++...+
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 666666666655 999999999875433322 222233332 799999999999965432 22344555555534
Q ss_pred -CeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 158 -VEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 158 -~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
++++++||++|.|++++|++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999987743
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=2.9e-26 Score=167.70 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=110.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chhh
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI--------TTAY 90 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 90 (221)
..++|+|+|.+|+|||||+++|++..+. ....+..+.++....+..++. .+.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 222333344445555666653 5889999997643211 1235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVN 170 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (221)
++.+|++++|+|++++.++.. ..|+..+......+.|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999999887764 3566666665545799999999999844211 01122456899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDII 182 (221)
Q Consensus 171 i~~l~~~i~~~~ 182 (221)
++++|++|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=3.4e-26 Score=178.70 Aligned_cols=153 Identities=23% Similarity=0.212 Sum_probs=115.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc------ccchhhcc-
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR------TITTAYYR- 92 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 92 (221)
+.++|+++|.+|||||||+++|++........ +++++......+.. ...+.+|||||...+. .++..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS--SCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35899999999999999999999876433333 35555555555555 5679999999988765 34455654
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 93 -GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 93 -~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
.+|++++|+|+++.++. ..|...+.. .+.|+++++||+|+...+.+. .+...++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345555544 389999999999985433333 3456777888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 172 KGVFERLVDII 182 (221)
Q Consensus 172 ~~l~~~i~~~~ 182 (221)
+++|++|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=7.9e-26 Score=171.76 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=116.8
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeC-CeEEEEEEEeCCCc----------c
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH-DKRVKLQIWDTAGQ----------E 81 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~ 81 (221)
+.+.+....++|+|+|.+|+|||||+++|++.........+.+.+......... .....+.+|||||. +
T Consensus 21 ~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 100 (223)
T 4dhe_A 21 LRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKA 100 (223)
T ss_dssp GGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHH
T ss_pred hhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHH
Confidence 445566678999999999999999999999987433344445555554444443 34467899999994 3
Q ss_pred cccccchhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHH-
Q psy2300 82 RYRTITTAYYRG---AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS--FERGKHLAES- 155 (221)
Q Consensus 82 ~~~~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~- 155 (221)
.+..+...++.. +|++++|+|++++.+.. ...|+..+.. .+.|+++|+||+|+....... .+........
T Consensus 101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 344445555554 88899999998754322 2345555554 379999999999996543321 1222223333
Q ss_pred ------hCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 156 ------LGVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 156 ------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.+.+++++||++|.|++++|++|.+.+....
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 3468999999999999999999998875543
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=9.3e-26 Score=174.90 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc----------cchhhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT----------ITTAYY 91 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 91 (221)
.+|+|+|.+|||||||+|+|++..+.....+..+.+.....+..++ ..+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999875444455555555555565554 3789999999876653 445566
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2300 92 --RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNV 169 (221)
Q Consensus 92 --~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (221)
..+|++++|+|+++.++...+. ..+.. .+.|+++|+||+|+...+.... ....+....+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~---~~l~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT---SQLFE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH---HHHTT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH---HHHHH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 8899999999999865544433 33333 3799999999999854332221 2345667789999999999999
Q ss_pred CHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDI 181 (221)
Q Consensus 170 gi~~l~~~i~~~ 181 (221)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998775
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=9e-25 Score=170.97 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=117.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc------cchhhc--c
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT------ITTAYY--R 92 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 92 (221)
.++|+|+|++|||||||+++|++..+.....+..+.+.....+...+ ..+.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 58999999999999999999999876444455555555555555544 4589999999887665 455555 6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2300 93 GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172 (221)
Q Consensus 93 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (221)
.+|++++|+|+++.. ....|...+... ...|+++++||+|+.+.+.... ....+.+.++++++++||++|.|++
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 899999999998753 222333444443 1399999999999754333332 2566777889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2300 173 GVFERLVDIICDK 185 (221)
Q Consensus 173 ~l~~~i~~~~~~~ 185 (221)
++|+++.+.+.+.
T Consensus 155 ~l~~~i~~~~~~~ 167 (271)
T 3k53_A 155 ELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999877543
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=3.6e-25 Score=173.37 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc----------cchhh
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT----------ITTAY 90 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~ 90 (221)
.++|+|+|.+|||||||+|+|++..+.....+..+.+.....+...+ ..+.+|||||...+.. .+..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999999875444444444444444444433 4688999999876652 12223
Q ss_pred c--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCC
Q psy2300 91 Y--RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN 168 (221)
Q Consensus 91 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (221)
+ ..+|++++|+|+++.+.... |...+... +.|+++|+||+|+.+.+... .....+....+++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 2 78999999999998655433 33344443 79999999999985433322 1245667778999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy2300 169 VNVKGVFERLVDIIC 183 (221)
Q Consensus 169 ~gi~~l~~~i~~~~~ 183 (221)
.|+++++++|.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999998876543
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2.8e-25 Score=168.25 Aligned_cols=146 Identities=21% Similarity=0.284 Sum_probs=106.0
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhcc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA---FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYR 92 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 92 (221)
......++|+|+|++|+|||||+++|++..+... +.++.+..+ ..+.+.+||+||++.+...+..++.
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~ 77 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLK 77 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHH
Confidence 3345679999999999999999999999886442 333333222 3457899999999999888888887
Q ss_pred C----CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----CCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHhC
Q psy2300 93 G----AMGFILMYDVT-NEESFTSIQDWITQIKTY----SWDNAQVILVGNKCDMEDERVIS------FERGKHLAESLG 157 (221)
Q Consensus 93 ~----~d~vi~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~ 157 (221)
. +|++|+|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+.....+. .++...++...+
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 157 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 7 89999999999 888998888888777543 33589999999999997765443 344566666667
Q ss_pred CeEEEEecCCCCC
Q psy2300 158 VEFFETSAKDNVN 170 (221)
Q Consensus 158 ~~~~~~Sa~~~~g 170 (221)
+.++++|+++|.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 7899999998765
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=4.9e-24 Score=177.19 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=114.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCc----------ccccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ----------ERYRTIT 87 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 87 (221)
+..++|+++|.+|+|||||+|+|++..+. ....+..+.+.....+..++. .+.+|||||+ +.|..++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45799999999999999999999988753 222333333333344555543 5899999997 3343333
Q ss_pred h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-HH----hCCeEE
Q psy2300 88 T-AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLA-ES----LGVEFF 161 (221)
Q Consensus 88 ~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~ 161 (221)
. .+++.+|++++|+|++++.++++. .|+..+.. .+.|+++|+||+|+.+.+....++..... .. .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 467889999999999998887776 46666654 38999999999999765554433332222 22 357999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 162 ETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 162 ~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
++||++|.|++++|+.+.+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=4e-24 Score=178.59 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=99.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT--------TAY 90 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 90 (221)
..++|+|+|.+|+|||||+|+|++... .....+..+.+.....+..++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 458999999999999999999998753 122233333333334454544 579999999987654332 336
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVN 170 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (221)
+..+|++++|+|++++.++..+..+...+.... +.|+++|+||+|+........ ..+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCCCC
Confidence 789999999999999887754444444444432 799999999999976554321 233333236899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIIC 183 (221)
Q Consensus 171 i~~l~~~i~~~~~ 183 (221)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988775
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=8.5e-23 Score=165.65 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=119.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc---------ccchh
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR---------TITTA 89 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 89 (221)
...++|+++|.+|+|||||+++|++..+.....+..+.......+... ...+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 467899999999999999999999887432222222222333333333 3578999999975321 11123
Q ss_pred hccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCC
Q psy2300 90 YYRGAMGFILMYDVTNEE--SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
+...+|++++|+|++++. ++.....|+..+.... .+.|+++|+||+|+..... .++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998876 6777778888876654 2799999999999966433 2445566667788999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2300 168 NVNVKGVFERLVDIICDK 185 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~ 185 (221)
|+|+++++++|.+.+...
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 128
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=7.5e-24 Score=167.76 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=106.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc--------ccccchhhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER--------YRTITTAYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 91 (221)
...+|+|+|.+|+|||||+|+|++..+... .+.++++.............++.||||||... +......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv-s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee-cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 456899999999999999999999876421 11122222222111222346899999999765 344455678
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hC-CeEEEEecCCCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAES-LG-VEFFETSAKDNV 169 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~ 169 (221)
+.+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+.+.... ....... .+ .+++++||++|.
T Consensus 85 ~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALDER 158 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTCHH
T ss_pred hcCCEEEEEEECCCCCChHH-HHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCCCC
Confidence 99999999999988654432 22334454432 47999999999999654330 1222222 23 479999999999
Q ss_pred CHHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDII 182 (221)
Q Consensus 170 gi~~l~~~i~~~~ 182 (221)
|+++++++|.+.+
T Consensus 159 gv~~l~~~l~~~l 171 (301)
T 1wf3_A 159 QVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhc
Confidence 9999999987654
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1.1e-24 Score=179.18 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=117.1
Q ss_pred hhhhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc----
Q psy2300 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI---- 86 (221)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---- 86 (221)
.|.+.+....++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+...+. ..+.+|||||++.+..+
T Consensus 25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~ 103 (423)
T 3qq5_A 25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLR 103 (423)
T ss_dssp CCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCC
T ss_pred ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHH
Confidence 344556677899999999999999999999988753 222333333444455555443 27899999998876554
Q ss_pred ---chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEE
Q psy2300 87 ---TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFET 163 (221)
Q Consensus 87 ---~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (221)
+..++..+|++|+|+|+... .....|+..+... +.|+++|+||+|+...... +....+...++++++++
T Consensus 104 ~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 104 VEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred HHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence 34478899999999998332 3345577777665 7999999999999776543 45566666778899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHh
Q psy2300 164 SAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
||++|.|++++|++|.+.+.+.
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999998887544
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.3e-23 Score=175.57 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=118.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeeEEEEEEeCCeEEEEEEEeCCC----------cccccccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG----------QERYRTIT 87 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 87 (221)
+..++|+++|.+|+|||||+++|++... .....+..+.+.....+..++. .+.+||||| ++.+..++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4679999999999999999999997652 2222333333333344445543 789999999 56665554
Q ss_pred h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-----CCeEE
Q psy2300 88 T-AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESL-----GVEFF 161 (221)
Q Consensus 88 ~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~ 161 (221)
. .+++.+|++|+|+|+++..... ...|...+.. .+.|+++|+||+|+.+.+....++..+.+... +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 3678999999999998854432 3345555554 37999999999999876666667766666655 47999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 162 ETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 162 ~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
++||++|.|++++|+++.+.+.+..
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999886654
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=8.5e-24 Score=169.79 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc----cccccchhhcc---CC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE----RYRTITTAYYR---GA 94 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~---~~ 94 (221)
.+|+|+|.+|||||||+++|++........+..+.......+.+++ ...+.+|||||.. .+..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4689999999999999999998764222222222222233344443 2468999999953 33344455544 49
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CeEEEEecCC
Q psy2300 95 MGFILMYDVTN---EESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLG--VEFFETSAKD 167 (221)
Q Consensus 95 d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 167 (221)
|++|+|+|+++ +++++++..|+..+..+. ..+.|+++|+||+|+.... +....+...+. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 788999999999988764 2589999999999996532 34455556655 6899999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2300 168 NVNVKGVFERLVDIICDK 185 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~ 185 (221)
+.|+++++++|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999887543
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=2.3e-22 Score=165.57 Aligned_cols=163 Identities=14% Similarity=0.159 Sum_probs=115.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEE---------EE-------EEe---CCeEEEEEEEeC
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV---------KT-------VFR---HDKRVKLQIWDT 77 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------~~-------~~~---~~~~~~~~i~D~ 77 (221)
.....++|+++|++++|||||+++|++....... .....+... .. ... ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 3456799999999999999999999985432210 000000000 00 000 112368999999
Q ss_pred CCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHH
Q psy2300 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS--FERGKHLAES 155 (221)
Q Consensus 78 ~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~ 155 (221)
||++.|...+...+..+|++++|+|++++.++.....|+..+.... ..|+++++||+|+.+..... .++...+...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998876777777777776653 46899999999996543221 1222222222
Q ss_pred h---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 156 L---GVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 156 ~---~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
. +++++++||++|.|+++++++|.+.+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2 56899999999999999999988754
No 133
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=4.5e-22 Score=164.08 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=104.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--ceeeeeEEEEEEe-------------C--C----eEEEEEE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS---FTSAFVS--TVGIDFKVKTVFR-------------H--D----KRVKLQI 74 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i 74 (221)
...++|+++|+.++|||||+++|++.. +..+..+ |....+....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 456999999999999999999998543 2233333 3333333333321 1 1 1368999
Q ss_pred EeCCCcccccccchhhccCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc--cCHHH
Q psy2300 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNE----ESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV--ISFER 148 (221)
Q Consensus 75 ~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~ 148 (221)
|||||++.|...+...+..+|++|+|+|++++ ++++++. .+... ...|+++++||+|+.+... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 99999999888777778889999999999964 3444433 23332 2458999999999976433 23455
Q ss_pred HHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 149 GKHLAES---LGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 149 ~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
...++.. .+++++++||++|.|+++++++|.+.+
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 5666554 357899999999999999999987654
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=1.5e-22 Score=163.15 Aligned_cols=119 Identities=19% Similarity=0.299 Sum_probs=99.4
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCC
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN----------EESFTSIQDWITQIKTYS-WDNAQVILVGNKCD 137 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D 137 (221)
.+.+.+||++|++.++..|..++++++++|||+|+++ ..++.+...|+..+.... ..+.|++|++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4789999999999999999999999999999999998 467888888888876532 35799999999999
Q ss_pred CCCCc---------------ccCHHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 138 MEDER---------------VISFERGKHLAE-----------SLGVEFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 138 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
+...+ .++.+++..++. ..++.+++|||+++.||.++|+++.+.+.+...
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 84322 256777777776 245789999999999999999999999887654
No 135
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=154.08 Aligned_cols=167 Identities=10% Similarity=0.140 Sum_probs=104.6
Q ss_pred hhcCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee--eEEEEEEeCCeEEEEEEEeCCCc-----------
Q psy2300 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVFRHDKRVKLQIWDTAGQ----------- 80 (221)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~----------- 80 (221)
.+.+....++|+|+|.+|+|||||+++|++..+.....+..+.+ ........++ ..+.+|||||.
T Consensus 22 ~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 22 RQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHH
T ss_pred cCCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHH
Confidence 34455678999999999999999999999988765554533333 3334444443 47899999993
Q ss_pred ccccccchhhccCCcEEEEEEECCChhh--HHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC------HHHHHHH
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEES--FTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS------FERGKHL 152 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~ 152 (221)
..+...+...++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+..+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 2334444455678899999999875432 22232233322222 246999999999986543332 1356677
Q ss_pred HHHhCCeEEEEecCCC-----CCHHHHHHHHHHHHHH
Q psy2300 153 AESLGVEFFETSAKDN-----VNVKGVFERLVDIICD 184 (221)
Q Consensus 153 ~~~~~~~~~~~Sa~~~-----~gi~~l~~~i~~~~~~ 184 (221)
.+..+..++.++...+ .++.++++.+.+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 7788888888877654 6888888887776654
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=1.5e-22 Score=169.31 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=112.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc-cccc--------cchhh
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE-RYRT--------ITTAY 90 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 90 (221)
.++|+|+|.+|+|||||+|+|++..+. ....+..+.+.....+..++ ..+.+|||+|.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999987632 23334344444445555554 568999999987 5432 23456
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVN 170 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (221)
+..+|++|+|+|++++.++++.. ++..+ .+.|+++|+||+|+... +..++...+. ..+.+++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 88999999999999887776543 22332 37899999999999653 3444444443 2346899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIICD 184 (221)
Q Consensus 171 i~~l~~~i~~~~~~ 184 (221)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999997664
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=1.1e-22 Score=169.25 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee--eEEEEEEeCCeEEEEEEEeCCCccc---------ccccchhh
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVFRHDKRVKLQIWDTAGQER---------YRTITTAY 90 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~ 90 (221)
.+|+++|.+|+|||||+|+|++.... ....+++++ .....+..++ ..+.+|||||.+. +...+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 47999999999999999999988742 123344443 3444555554 3588999999653 23445667
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHH-HHHHHHhCC-eEEEEecCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERG-KHLAESLGV-EFFETSAKDN 168 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~ 168 (221)
++.+|++++|+|+.++.+..+. .+...+... +.|+++|+||+|+... . ..+. .++. ..++ .++++||++|
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~-~i~~~l~~~---~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDE-SLADFLRKS---TVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHN 150 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHH-HHHHHHHHH---TCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred HHhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCC
Confidence 8999999999999876544321 122222222 7999999999998432 1 1222 3333 4566 7899999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2300 169 VNVKGVFERLVDIICDK 185 (221)
Q Consensus 169 ~gi~~l~~~i~~~~~~~ 185 (221)
.|+++++++|.+.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 151 INLDTMLETIIKKLEEK 167 (439)
T ss_dssp BSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcccc
Confidence 99999999999887643
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=2.4e-22 Score=171.62 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=110.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC--CC-----Cc------cccceeeeeEEEEEEe-----CCeEEEEEEEeCCCcc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS--FT-----SA------FVSTVGIDFKVKTVFR-----HDKRVKLQIWDTAGQE 81 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~--~~-----~~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~ 81 (221)
+..+|+++|+.++|||||+++|+... +. .. ...+.+++.......+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 10 00 1112344443333322 4556899999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC---
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV--- 158 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 158 (221)
.|...+..++..+|++|+|+|++++.+.+....|..... .+.|+++++||+|+.+.. ..+....+...+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999888889999999999999999877777777766654 278999999999997653 22334455555665
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 159 EFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 159 ~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.++++||++|.|+++++++|.+.+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHS
T ss_pred eEEEeecccCCCchhHHHHHhhcC
Confidence 489999999999999999888765
No 139
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=8.8e-22 Score=162.45 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=111.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--ceeeeeEEEEEEe-------------C--C----eEEEEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDS---FTSAFVS--TVGIDFKVKTVFR-------------H--D----KRVKLQ 73 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 73 (221)
....++|+++|+.++|||||+++|++.. +..+..+ |....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4578999999999999999999998543 2233333 3333333333321 0 1 136899
Q ss_pred EEeCCCcccccccchhhccCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc--cCHH
Q psy2300 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNE----ESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV--ISFE 147 (221)
Q Consensus 74 i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~ 147 (221)
||||||++.|...+...+..+|++|+|+|+++. ++.+.+. .+... ...|+++++||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII--GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999887777778899999999999964 3444433 23333 2468999999999966432 1233
Q ss_pred HHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 148 RGKHLAES---LGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
+...++.. .+++++++||++|.|+++++++|.+.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 44445443 357899999999999999999887654
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=5.4e-22 Score=166.45 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=109.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhcc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS-------FTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYR 92 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 92 (221)
..++|+++|+.++|||||+++|++.. +..+..+.++.+.....+..++ ..+.+|||||++.|...+...+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 57999999999999999999999876 2222222222222222333333 67999999999999888888999
Q ss_pred CCcEEEEEEECCC---hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHh----CCeEEEE
Q psy2300 93 GAMGFILMYDVTN---EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--SFERGKHLAESL----GVEFFET 163 (221)
Q Consensus 93 ~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~ 163 (221)
.+|++++|+|+++ +++.+.+. .+... +.|+++++||+|+.+.... ..++...++... +.+++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHML----ILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHH----HHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hCCEEEEEEecCCCccHHHHHHHH----HHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999987 44444332 33332 7889999999999653211 123444555554 5789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy2300 164 SAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 164 Sa~~~~gi~~l~~~i~~~~~ 183 (221)
||++|.|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999998775
No 141
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=2.2e-22 Score=159.55 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=105.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc---------cccccchhh
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE---------RYRTITTAY 90 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 90 (221)
...+|+|+|++|+|||||+++|++..+... .+..+++.......+.....++.+|||||.. .+......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~-s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISIT-SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEEC-CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcccc-CCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 446899999999999999999999875321 1112222221111122233679999999986 234445667
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNV 169 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 169 (221)
+..+|++++|+|+++ - .....|+...... .+.|+++++||+|+........+....+....++ .++++||++|.
T Consensus 86 l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-W--TPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCEEEEEEEEETTC-C--CHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HhcCCEEEEEEeCCC-C--CHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 889999999999976 2 2222333222221 3799999999999966222222344455555565 79999999999
Q ss_pred CHHHHHHHHHHHH
Q psy2300 170 NVKGVFERLVDII 182 (221)
Q Consensus 170 gi~~l~~~i~~~~ 182 (221)
|+++++++|.+.+
T Consensus 161 ~v~~l~~~i~~~l 173 (301)
T 1ega_A 161 NVDTIAAIVRKHL 173 (301)
T ss_dssp THHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhC
Confidence 9999999887654
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=2.2e-23 Score=173.32 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc--------cccccchhhccC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE--------RYRTITTAYYRG 93 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 93 (221)
++|+++|.+|+|||||+|+|++..+. ...++++++...........+..+.+|||||.+ .+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 68999999999999999999987653 345667777666666665556679999999975 456667778899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2300 94 AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVK 172 (221)
Q Consensus 94 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 172 (221)
+|++|+|+|+.++.+..+. .+...+.. .+.|+++|+||+|+..... +..++. ..++ .++++||++|.|++
T Consensus 83 ad~il~vvD~~~~~~~~d~-~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADE-EVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHHH-HHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 9999999999987665432 23333332 4899999999999864321 111122 3455 78999999999999
Q ss_pred HHHHHHHHHHH
Q psy2300 173 GVFERLVDIIC 183 (221)
Q Consensus 173 ~l~~~i~~~~~ 183 (221)
++++++.+.+.
T Consensus 154 ~L~~~i~~~l~ 164 (436)
T 2hjg_A 154 DLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHhcC
Confidence 99999987764
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=2.3e-21 Score=157.05 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc---------cccccchhhccC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE---------RYRTITTAYYRG 93 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~~ 93 (221)
.|+|+|.+|+|||||+++|++..+.....+..+.+.....+.+++ ..+.+|||+|.- .+...+ ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999998875433333333344555666666 467899999962 222222 24788
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHh---CCeEEEEecCC
Q psy2300 94 AMGFILMYDVTNEE--SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS-FERGKHLAESL---GVEFFETSAKD 167 (221)
Q Consensus 94 ~d~vi~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~---~~~~~~~Sa~~ 167 (221)
+|++++|+|++++. ....+..|...+......+.|+++|+||+|+....... .+....+.... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 56666666666666544678999999999986543110 11222333444 24689999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q psy2300 168 NVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 168 ~~gi~~l~~~i~~~~~~~~ 186 (221)
|.|+++++++|.+.+....
T Consensus 338 g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp TBSHHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHhcccC
Confidence 9999999999998776543
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.1e-21 Score=167.47 Aligned_cols=159 Identities=21% Similarity=0.337 Sum_probs=113.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----ccc------cceeeeeEE--EEEEe---CCeEEEEEEEeCCCc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS--FTS-----AFV------STVGIDFKV--KTVFR---HDKRVKLQIWDTAGQ 80 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~-----~~~------~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~ 80 (221)
+...+|+++|+.++|||||+++|+... +.. .+. ...+++... ..+.. ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999997631 110 011 112233221 11211 455689999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--
Q psy2300 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-- 158 (221)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 158 (221)
..|...+..++..+|++|+|+|++++.+.+....|..... .+.|+++++||+|+.+... .....++....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~~--~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSADV--DRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCCH--HHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccCH--HHHHHHHHHhhCCCc
Confidence 9998888888999999999999999887777777766654 3799999999999976531 2234445555565
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 159 -EFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 159 -~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
.++++||++|.|+++++++|.+.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999998877653
No 145
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=3.2e-22 Score=168.18 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=102.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeeeeEEEEEEeCCeE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS--FTS---------------------------AFVSTVGIDFKVKTVFRHDKR 69 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 69 (221)
...++|+++|++++|||||+++|+... +.. ......+++.......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 457999999999999999999997651 100 001112444444444444455
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHH------HHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFT------SIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.||||||++.|...+..++..+|++|+|+|++++..+. .....+..+... ...|++|++||+|+.+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 78999999999999999999999999999999999865432 222222333332 2356999999999976433
Q ss_pred cCHHHHH----HHHHHh-----CCeEEEEecCCCCCHHHH
Q psy2300 144 ISFERGK----HLAESL-----GVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 144 ~~~~~~~----~~~~~~-----~~~~~~~Sa~~~~gi~~l 174 (221)
...++.. .+.... +++++++||++|.|++++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 3333333 333333 357999999999999853
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=3e-21 Score=160.28 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=106.8
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------ccccceeeeeEEEEEEeC
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSF--TS---------------------------AFVSTVGIDFKVKTVFRH 66 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~ 66 (221)
.+....++|+++|++++|||||+++|+...- .. ......+++.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3445689999999999999999999954320 00 001112444444444444
Q ss_pred CeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhCCCCCc-EEEEEeCCCCC
Q psy2300 67 DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEES---FT---SIQDWITQIKTYSWDNAQ-VILVGNKCDME 139 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~ 139 (221)
.....+.||||||++.|...+...+..+|++|+|+|+++... |+ .....+..+.. .+.| +++++||+|+.
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDP 168 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCc
Confidence 455689999999999999988889999999999999987532 11 22222222333 2666 99999999985
Q ss_pred CCc--c----cCHHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q psy2300 140 DER--V----ISFERGKHLAESLG------VEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 140 ~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 176 (221)
... . ...++...++...+ ++++++||++|.|++++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 421 1 11223344444444 4799999999999999766
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=4.9e-22 Score=154.43 Aligned_cols=165 Identities=14% Similarity=0.148 Sum_probs=105.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCC-CCCccccc-eeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc-------
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVST-VGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT------- 87 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------- 87 (221)
+....++|+|+|++|+|||||+++|++.. +.....++ .+..........++ ..+.||||||...+....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34467999999999999999999999877 33333333 33333333444443 579999999976543221
Q ss_pred ----hhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhCCCCCcEEEEEe-CCCCCCCcccCH-------HHHHHHHH
Q psy2300 88 ----TAYYRGAMGFILMYDVTNEES-FTSIQDWITQIKTYSWDNAQVILVGN-KCDMEDERVISF-------ERGKHLAE 154 (221)
Q Consensus 88 ----~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~ 154 (221)
..+++.+|++|+|+|+++... ...+..++..+.... ...|.++++| |+|+.... +.. .+...+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence 226788999999999986222 122223333332111 1356666666 99997432 111 22334555
Q ss_pred HhCCe---E--EEEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 155 SLGVE---F--FETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 155 ~~~~~---~--~~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
..+.. + +++||++|.|++++|++|.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 55532 2 7899999999999999999988764
No 148
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=1.3e-21 Score=150.87 Aligned_cols=167 Identities=11% Similarity=0.096 Sum_probs=104.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCc--------ccccccchhh
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ--------ERYRTITTAY 90 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~ 90 (221)
...++|+|+|.+|+|||||+|+|++..+.....++.+++...........+..+.+|||||. +.+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 45799999999999999999999998865444444334333322222223467899999995 2232222223
Q ss_pred c----cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHhCCe
Q psy2300 91 Y----RGAMGFILMYDVTNEES-FTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS------FERGKHLAESLGVE 159 (221)
Q Consensus 91 ~----~~~d~vi~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 159 (221)
+ +.+|++|+|+|+++... ...+..++..+......+.|++|++||.|+.+..... .+..+.+....+..
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~ 178 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR 178 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe
Confidence 3 89999999999985321 1122223333322212368999999999996532211 13356677777877
Q ss_pred EEEEecCC-----CCCHHHHHHHHHHHHHHh
Q psy2300 160 FFETSAKD-----NVNVKGVFERLVDIICDK 185 (221)
Q Consensus 160 ~~~~Sa~~-----~~gi~~l~~~i~~~~~~~ 185 (221)
++.++... +.|+.+|++.|.+.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 179 VCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 77776655 579999999988877654
No 149
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=1.1e-21 Score=155.98 Aligned_cols=120 Identities=22% Similarity=0.268 Sum_probs=97.9
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCC
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVT----------NEESFTSIQDWITQIKTYS-WDNAQVILVGNKCD 137 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D 137 (221)
.+.+++||++|++.++..|..++++++++|+|+|++ +..++.+...|+..+.... ..+.|++|++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 478999999999999999999999999999999665 5677887777777775432 35899999999999
Q ss_pred CCCCc----------------ccCHHHHHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcc
Q psy2300 138 MEDER----------------VISFERGKHLAE----------SLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188 (221)
Q Consensus 138 l~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~ 188 (221)
+.+.+ ..+.+++..++. ..++.++++||+++.||+.+|+.+.+.+.+...+
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~ 322 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 322 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHH
Confidence 85432 356777777743 3456789999999999999999999999887543
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=3.8e-22 Score=166.11 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=101.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTIT--------TAY 90 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 90 (221)
..++|+++|.+|+|||||+|+|++..+. ....+..+.+.....+..++ ..+.+|||+|...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4589999999999999999999987532 22233333333333444454 568999999975543322 235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2300 91 YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVN 170 (221)
Q Consensus 91 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (221)
+..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998766554 34444442 47999999999997654432 111111 346899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2300 171 VKGVFERLVDIICDK 185 (221)
Q Consensus 171 i~~l~~~i~~~~~~~ 185 (221)
+++++++|.+.+...
T Consensus 371 i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 371 IDSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998877543
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.1e-23 Score=177.45 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=112.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
..++|+++|++++|||||+++|.+..+.....++.+.++....+..+ ....++||||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999999876544444444433333333332 22368999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCH-HHHHHH---HHHh--CCeEEEEecCCCCCHHH
Q psy2300 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISF-ERGKHL---AESL--GVEFFETSAKDNVNVKG 173 (221)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~ 173 (221)
|+|+++.........| ..+.. .+.|++|++||+|+.+...... .+...+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~---~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD---AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT---TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHHH-HHHHH---cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999986554443332 23332 4789999999999965322111 111111 1111 24799999999999999
Q ss_pred HHHHHHHHHH
Q psy2300 174 VFERLVDIIC 183 (221)
Q Consensus 174 l~~~i~~~~~ 183 (221)
++++|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999887653
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=5.2e-22 Score=155.51 Aligned_cols=160 Identities=13% Similarity=0.219 Sum_probs=92.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc-c-------ccceeeeeEEEEEEeCCeEEEEEEEeCCCcc-------cc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-F-------VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE-------RY 83 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~ 83 (221)
...++|+|+|.+|+|||||+|+|++...... + .++.+.+.....+..++..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3579999999999999999999887654332 2 3444555555555444445789999999962 22
Q ss_pred cccc-------hhhcc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 84 RTIT-------TAYYR-------------GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 84 ~~~~-------~~~~~-------------~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
..+. ..++. .+|+++++++.........-..++..+.. +.|+++|+||+|+....+
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 2222 22222 37799999976653222222334444433 799999999999854333
Q ss_pred cCH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 144 ISF--ERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 144 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
... +.........+++++++|+++++|+++++++|.+.+
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 221 234445556788999999999999999998876543
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=1.4e-20 Score=156.60 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=107.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccccc-----------
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTI----------- 86 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 86 (221)
+..++|+|+|++|||||||+++|++.... ....+..+.+.....+..++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35699999999999999999999987642 122222222233344555554 5789999996432211
Q ss_pred -chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-H----HhCCeE
Q psy2300 87 -TTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLA-E----SLGVEF 160 (221)
Q Consensus 87 -~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~ 160 (221)
...++..+|++++|+|++++.+..+. .+...+.. .+.|+++++||+|+.+.+....++..... . ..+.++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 12356789999999999887665542 23333333 38999999999999765444343332222 2 234689
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 161 FETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 161 ~~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
+++||++|.|++++|+.+.+.+.+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999877654
No 154
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.86 E-value=2.5e-21 Score=156.46 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=91.6
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCCC
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN----------EESFTSIQDWITQIKTYS-WDNAQVILVGNKCD 137 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D 137 (221)
.+.+.+||++|++.++..|..++++++++|||+|+++ ..++.+...|+..+.... ..+.|++|++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 778999888888876542 35899999999999
Q ss_pred CCCCc----------------ccCHHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q psy2300 138 MEDER----------------VISFERGKHLAE-----------SLGVEFFETSAKDNVNVKGVFERLVDIICDKMS 187 (221)
Q Consensus 138 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 187 (221)
+...+ ..+.+++..++. ..++.+++|||+++.||+++|+++.+.+.+...
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 85321 255667766652 345788999999999999999999999887654
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=1.1e-21 Score=159.36 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 102 (221)
+|+++|++++|||||+++|+ ..+++.......+......+.+|||||++.|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 12222222222333344679999999999998777788899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCCCcE-EEEEe-CCCCCCCcccCH--HHHHHHHHHhC---CeEEE--EecCC---CCC
Q psy2300 103 VTNEESFTSIQDWITQIKTYSWDNAQV-ILVGN-KCDMEDERVISF--ERGKHLAESLG---VEFFE--TSAKD---NVN 170 (221)
Q Consensus 103 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~g 170 (221)
++ ..+.....++..+... +.|. ++++| |+|+ +...... ++...++...+ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 43 3445555666655554 6777 89999 9999 5332221 34444444433 68999 99999 999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2300 171 VKGVFERLVDIICDK 185 (221)
Q Consensus 171 i~~l~~~i~~~~~~~ 185 (221)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887543
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=7.3e-22 Score=162.69 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=105.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCc-------cccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD--------SFTSA-------FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 83 (221)
...++|+++|++++|||||+++|++. .+... ...+.+++.......++.....+.+|||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35799999999999999999999873 21110 0113344444444444444567999999999999
Q ss_pred cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHhC--
Q psy2300 84 RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVI---SFERGKHLAESLG-- 157 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 157 (221)
...+..++..+|++|+|+|++++... ....++..+... +.| +++++||+|+.+.... ..++...++..++
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 88888889999999999999886543 334555555543 678 8999999999742211 1224555666655
Q ss_pred ---CeEEEEecCCCCC
Q psy2300 158 ---VEFFETSAKDNVN 170 (221)
Q Consensus 158 ---~~~~~~Sa~~~~g 170 (221)
++++++||++|.|
T Consensus 165 ~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 165 GDEVPVIRGSALLALE 180 (405)
T ss_dssp TTTSCEEECCHHHHHH
T ss_pred ccCCCEEEccHHHhhh
Confidence 6899999999987
No 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.6e-21 Score=144.67 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=89.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccC
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA---FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRG 93 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (221)
+....++|+|+|++|+|||||+++|++..+... ..++.+. +...+.+.+|||||.+.+...+..++..
T Consensus 44 ~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 114 (193)
T 2ged_A 44 GGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKT 114 (193)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHh
Confidence 345789999999999999999999999875431 1122211 1134578999999999888877777765
Q ss_pred ----CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----CCCCCcEEEEEeCCCCCCCcc
Q psy2300 94 ----AMGFILMYDVT-NEESFTSIQDWITQIKTY----SWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 94 ----~d~vi~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+|++++|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.+...
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999888887776543 235899999999999976543
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=1.6e-21 Score=160.24 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=109.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCc-------cccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS-------FTSA-------FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT 85 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 85 (221)
..++|+++|++++|||||+++|+... +... .....+++.......+......+.||||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998741 1100 011223444433344444446799999999999888
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHhC----
Q psy2300 86 ITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERV---ISFERGKHLAESLG---- 157 (221)
Q Consensus 86 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~---- 157 (221)
.+..++..+|++|+|+|+++....+.. .++..+... +.| +++++||+|+.+... ...++...++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999985433333 333334332 788 789999999964221 11234556666665
Q ss_pred -CeEEEEecCCCCC----------HHHHHHHHHHHH
Q psy2300 158 -VEFFETSAKDNVN----------VKGVFERLVDII 182 (221)
Q Consensus 158 -~~~~~~Sa~~~~g----------i~~l~~~i~~~~ 182 (221)
++++++||++|.| +.+++++|.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 777777665543
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=2.5e-21 Score=163.64 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=84.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC------------------CCCc--cccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS------------------FTSA--FVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
...+|+|+|++|+|||||+++|+... +... .....+++.......+....+.+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 56899999999999999999996211 0000 000122233222222333347899999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
+..+...+..+++.+|++|+|+|+++.........|. .+.. .+.|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCccc
Confidence 9999988889999999999999999877666655453 3333 37999999999999654
No 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=7.3e-22 Score=160.10 Aligned_cols=167 Identities=14% Similarity=0.258 Sum_probs=94.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--------cceeeeeEEEEEEeCCeEEEEEEEeCCCc-------c
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFV--------STVGIDFKVKTVFRHDKRVKLQIWDTAGQ-------E 81 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~ 81 (221)
....++|+|+|++|+|||||+++|++.... ..+. ++.+.......+..++..+.+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 346799999999999999999998765432 2221 33343333333444455678999999998 6
Q ss_pred cccccch-------hhccCC-------------cEEEEEEECCChhhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 82 RYRTITT-------AYYRGA-------------MGFILMYDVTNEESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 82 ~~~~~~~-------~~~~~~-------------d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
.+..++. .++..+ ++++|+++.. ..++..+. .|+..+ ..+.|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC
Confidence 6666665 444433 3455555432 34444444 344433 25799999999999976
Q ss_pred CcccCH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcccc
Q psy2300 141 ERVISF--ERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESL 190 (221)
Q Consensus 141 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~ 190 (221)
.+.+.. ++...++..++++++++||+++.| ++.|.++.+.+.+..+...
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v 239 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSV 239 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence 555443 355566666788999999999999 8999999999887765443
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=1.3e-20 Score=161.04 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=107.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCc----cccceeeeeEEEEE------------EeCCeEEEEEEEeCCCcccc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSA----FVSTVGIDFKVKTV------------FRHDKRVKLQIWDTAGQERY 83 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~ 83 (221)
+.++|+++|++++|||||+++|++..+... ..++.+..+..... ..+.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 357999999999999999999987643221 11122211111000 00011125899999999999
Q ss_pred cccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC-------------H-
Q psy2300 84 RTITTAYYRGAMGFILMYDVTN---EESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS-------------F- 146 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-------------~- 146 (221)
..++..++..+|++|+|+|+++ +++++.+.. +.. .+.|+++++||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999888999999999999998 555554432 223 379999999999985421100 0
Q ss_pred --H-------HHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 147 --E-------RGKHLAESLG---------------VEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 147 --~-------~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
+ +........+ ++++++||++|.|+++++++|...+....
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 1111112222 37999999999999999999998776443
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=1.3e-21 Score=162.41 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=104.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCcc---------------------------ccceeeeeEEEEEEeCCeE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD--SFTSAF---------------------------VSTVGIDFKVKTVFRHDKR 69 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 69 (221)
...++|+++|++++|||||+++|+.. .+.... ....+++.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35699999999999999999999864 222110 0012333333333334445
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHH-------HHHHHhhCCCCCcEEEEEeCCCCCCCc
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDW-------ITQIKTYSWDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~-------~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 142 (221)
+.+.||||||++.|...+..++..+|++|+|+|+++ .+|+....| ...+... ...++++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 689999999999999888889999999999999998 667644322 2222222 134699999999996521
Q ss_pred ------ccCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2300 143 ------VISFERGKHLAESLG-----VEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 143 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 176 (221)
....++...++...+ ++++++||++|.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112345566666665 6799999999999986654
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=7.7e-21 Score=157.84 Aligned_cols=157 Identities=21% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCC---CCCc---------cccc-------------------eeeeeEEEEEEe
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDS---FTSA---------FVST-------------------VGIDFKVKTVFR 65 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~---~~~~---------~~~~-------------------~~~~~~~~~~~~ 65 (221)
.....++|+++|++++|||||+++|+... +... ...+ .+++.......+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 33567999999999999999999998653 1100 0011 122222222223
Q ss_pred CCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc-
Q psy2300 66 HDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI- 144 (221)
Q Consensus 66 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~- 144 (221)
......+.+|||||++.|...+..++..+|++|+|+|++++... ....++..+... ...|+++++||+|+.+....
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL--GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence 33446799999999999988888889999999999999986432 233444444443 12469999999999753211
Q ss_pred ---CHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2300 145 ---SFERGKHLAESLG-----VEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 145 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 176 (221)
..++...+++.++ ++++++||++|.|++++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1234556666666 6899999999999998544
No 164
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=8.4e-22 Score=164.82 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=91.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCc---------------------------cccceeeeeEEEEEEeCC
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADD--SFTSA---------------------------FVSTVGIDFKVKTVFRHD 67 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 67 (221)
.....++|+++|+.++|||||+++|+.. .+... .....+++.......+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3457899999999999999999999752 11100 000112222222112222
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh---hHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCc-
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE---SFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDER- 142 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~- 142 (221)
....+.||||||++.|...+...+..+|++|+|+|+++.. +|+...+|...+......+.| ++|++||+|+.+..
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 3467999999999999988888899999999999999862 332222222222211113677 99999999995421
Q ss_pred -----ccCHHHHHHHHHHh-------CCeEEEEecCCCCCHHHHH
Q psy2300 143 -----VISFERGKHLAESL-------GVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 143 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~ 175 (221)
....++...++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123455666555 3569999999999998866
No 165
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=2e-20 Score=150.66 Aligned_cols=121 Identities=15% Similarity=0.260 Sum_probs=95.0
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCC
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVT----------NEESFTSIQDWITQIKTYS-WDNAQVILVGNKC 136 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~ 136 (221)
..+.+.+|||+|++.++.+|..++++++++|+|+|++ +..++++...|+..+.... ..+.|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7789999988888876542 3589999999999
Q ss_pred CCCCCcc--c-------------------CHHHHHHHHHH----------------hCCeEEEEecCCCCCHHHHHHHHH
Q psy2300 137 DMEDERV--I-------------------SFERGKHLAES----------------LGVEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 137 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
|+.+.+. + +.++...++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843221 1 23555555432 123568999999999999999999
Q ss_pred HHHHHhhcc
Q psy2300 180 DIICDKMSE 188 (221)
Q Consensus 180 ~~~~~~~~~ 188 (221)
+.+.+...+
T Consensus 341 ~~I~~~~l~ 349 (354)
T 2xtz_A 341 ETLRRRNLL 349 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.1e-21 Score=163.90 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=102.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCC--------cccccccchhhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG--------QERYRTITTAYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~ 91 (221)
...+|+|+|.+|||||||+|+|++..+. ....+++++...........+..+.+||||| ++.+...+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 3579999999999999999999988753 3456677777777776666667899999999 666777778889
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVN 170 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 170 (221)
..+|++|+|+|+.+..... ..|+..+... .+.|+++|+||+|+.+... ...++. ..++ .++++||++|.|
T Consensus 101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHCSEEEEEEESSSCSCHH--HHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCCChH--HHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccc
Confidence 9999999999987643322 2333333222 4899999999999854321 111111 2233 578999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2300 171 VKGVFERLVDIIC 183 (221)
Q Consensus 171 i~~l~~~i~~~~~ 183 (221)
+.++++++.+.+.
T Consensus 172 v~~L~~~i~~~l~ 184 (456)
T 4dcu_A 172 LGDLLDAVAEHFK 184 (456)
T ss_dssp HHHHHHHHHTTGG
T ss_pred hHHHHHHHHhhcc
Confidence 9999999877553
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-21 Score=166.83 Aligned_cols=154 Identities=17% Similarity=0.185 Sum_probs=102.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc-----------------------------cceeeeeEEEEEEeCCeE
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV-----------------------------STVGIDFKVKTVFRHDKR 69 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 69 (221)
...++|+++|++|+|||||+++|+......... ...|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 347899999999999999999998663211000 012333333333333345
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE---SF---TSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.||||||++.|...+..++..+|++|+|+|++++. ++ ......+..+... ...|++||+||+|+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 68999999999999988888999999999999998742 11 1122222222222 2345999999999976333
Q ss_pred cCHH----HHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q psy2300 144 ISFE----RGKHLAESLG-----VEFFETSAKDNVNVKGV 174 (221)
Q Consensus 144 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 174 (221)
...+ +...++...+ ++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222 2333444443 58999999999999876
No 168
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=1.7e-20 Score=149.60 Aligned_cols=117 Identities=23% Similarity=0.252 Sum_probs=94.3
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhC-CCCCcEEEEEeCC
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVT----------NEESFTSIQDWITQIKTYS-WDNAQVILVGNKC 136 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~ 136 (221)
..+.+++||++|++.++..|..++++++++|+|+|++ +..++.+...|+..+.... ..+.|++|++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 6788888888877775532 3589999999999
Q ss_pred CCCCCc---------------ccCHHHHHHHHHH---------------------------hCCeEEEEecCCCCCHHHH
Q psy2300 137 DMEDER---------------VISFERGKHLAES---------------------------LGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 137 Dl~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~gi~~l 174 (221)
|+.+.+ ..+.+++..++.. ..+.++++||+++.+|+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 984311 1234555444432 1367889999999999999
Q ss_pred HHHHHHHHHH
Q psy2300 175 FERLVDIICD 184 (221)
Q Consensus 175 ~~~i~~~~~~ 184 (221)
|+.+.+.+.+
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.83 E-value=4.7e-22 Score=166.31 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=104.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 99 (221)
+..+|+++|++++|||||+++|....+.....+.++.+.....+..+ +..+.||||||++.|..++...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 45789999999999999999998765433322222222222222222 3468999999999999999889999999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc--ccCHH--HHHHHHHHhC--CeEEEEecCCCCC
Q psy2300 100 MYDVTNE---ESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER--VISFE--RGKHLAESLG--VEFFETSAKDNVN 170 (221)
Q Consensus 100 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~g 170 (221)
|+|+++. ++.+.+ ..+.. .+.|+++++||+|+.+.. .+..+ +...+...++ ++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 9999883 333332 22222 378999999999996431 11100 0000111222 6899999999999
Q ss_pred HHHHHHHHHH
Q psy2300 171 VKGVFERLVD 180 (221)
Q Consensus 171 i~~l~~~i~~ 180 (221)
++++|++|..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999998763
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=1.3e-20 Score=168.49 Aligned_cols=160 Identities=17% Similarity=0.113 Sum_probs=108.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDS-------FTS-------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 83 (221)
....++|+++|++++|||||+++|++.. +.. ....+.+++.....+.++.....+.||||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3467999999999999999999998641 000 11233455544433444445568999999999999
Q ss_pred cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHhC--
Q psy2300 84 RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERVI---SFERGKHLAESLG-- 157 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 157 (221)
...+...+..+|++|+|+|++++...+ ...++..+... +.| ++|++||+|+.+.... ..++...++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 888888899999999999999864322 33344444443 678 7999999999753221 1234556666665
Q ss_pred ---CeEEEEecCCC--------CCHHHHHHHHHHH
Q psy2300 158 ---VEFFETSAKDN--------VNVKGVFERLVDI 181 (221)
Q Consensus 158 ---~~~~~~Sa~~~--------~gi~~l~~~i~~~ 181 (221)
++++++||++| .|+.+++++|.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 58999999999 3577777766543
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=4.2e-21 Score=151.99 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=102.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccce-----------------e---eeeE-----------
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF------VSTV-----------------G---IDFK----------- 59 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~------~~~~-----------------~---~~~~----------- 59 (221)
+....++|+|+|.+|+|||||+++|++..+.+.. .|+. + +++.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 4456789999999999999999999998864211 1210 0 0000
Q ss_pred ------------EEEEEeC-CeEEEEEEEeCCCcc-------------cccccchhhccCCcEEE-EEEECCChhhHHHH
Q psy2300 60 ------------VKTVFRH-DKRVKLQIWDTAGQE-------------RYRTITTAYYRGAMGFI-LMYDVTNEESFTSI 112 (221)
Q Consensus 60 ------------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~s~~~~ 112 (221)
...+.+. .....+.+|||||.. .+..+...++..++.++ +|+|+++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0000000 012578999999953 33455666788888666 79999875444333
Q ss_pred HHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--hC-CeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 113 QDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAES--LG-VEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 113 ~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
..++..+.. .+.|+++|+||+|+.+......+........ .+ .+++++||++|.|+++++++|.+.
T Consensus 182 ~~~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LKIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 334444433 4799999999999965433222222210001 12 267899999999999999998873
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=9.4e-20 Score=136.89 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=101.8
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc----------ccc
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER----------YRT 85 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~ 85 (221)
.+.....+|+++|++|||||||+++|++..+...+.++.+.+.....+..++ .+.+||+||... +..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 4556678999999999999999999998875455556666665544443333 477999999642 222
Q ss_pred cchhhc---cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHhC--C
Q psy2300 86 ITTAYY---RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--SFERGKHLAESLG--V 158 (221)
Q Consensus 86 ~~~~~~---~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~ 158 (221)
....++ ..++++++++|+.++.+.... .....+.. .+.|+++++||+|+....+. ....+..++...+ +
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 222333 578999999999886554321 12222222 37899999999998543211 1234445554444 4
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 159 EFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 159 ~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
.++++|++++.|+++++++|.+.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 78899999999999999998876543
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=1.8e-20 Score=156.49 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=102.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCCCc---------------------------cccceeeeeEEEEEEeCCeEE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD--SFTSA---------------------------FVSTVGIDFKVKTVFRHDKRV 70 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 70 (221)
..++|+++|++++|||||+++|+.. .+... .....+++.......++....
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 5699999999999999999999864 12110 000122232222222333446
Q ss_pred EEEEEeCCCcccccccchhhccCCcEEEEEEECCChh---hHH---HHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCCcc
Q psy2300 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE---SFT---SIQDWITQIKTYSWDNAQ-VILVGNKCDMEDERV 143 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~ 143 (221)
.+.||||||++.|...+..++..+|++|+|+|+++.. +|+ ....++..+... +.| ++|++||+|+.+...
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTCH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccccCCH
Confidence 8999999999999988888999999999999998753 221 222333333332 565 999999999963211
Q ss_pred ----cCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q psy2300 144 ----ISFERGKHLAESLG-----VEFFETSAKDNVNVKGV 174 (221)
Q Consensus 144 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 174 (221)
...++...++..++ ++++++||++|.|+.++
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11234555555555 68999999999999755
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.80 E-value=2.8e-20 Score=159.45 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=83.7
Q ss_pred cCCCeeeEEEEEcCCCCCHHHHHHHHhcCC--CC-C--------------------------ccccceeeeeEEEEEEeC
Q psy2300 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDS--FT-S--------------------------AFVSTVGIDFKVKTVFRH 66 (221)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKSsli~~l~~~~--~~-~--------------------------~~~~~~~~~~~~~~~~~~ 66 (221)
......++|+++|++++|||||+++|+... +. . ......+++.......+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 344568999999999999999999996421 00 0 000122444444444444
Q ss_pred CeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhCCCCCc-EEEEEeCCCCC
Q psy2300 67 DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE---SF---TSIQDWITQIKTYSWDNAQ-VILVGNKCDME 139 (221)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~ 139 (221)
.....+.||||||++.|...+...+..+|++|+|+|++++. ++ ......+..+... +.| +|||+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 45578999999999999988888999999999999998632 11 1112222233332 565 99999999996
Q ss_pred CCcccCH----HHHHHHH-HHhCC-----eEEEEecCCCCCHH
Q psy2300 140 DERVISF----ERGKHLA-ESLGV-----EFFETSAKDNVNVK 172 (221)
Q Consensus 140 ~~~~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~ 172 (221)
+...... .+...+. ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 5222111 2233333 33343 79999999999998
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=9e-19 Score=143.73 Aligned_cols=161 Identities=13% Similarity=0.154 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccchh---hccCCc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER----YRTITTA---YYRGAM 95 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~d 95 (221)
.|+|+|++|||||||++++++........+..+.......+..+. ...+.+||++|... +..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 489999999999999999998753111111111122222333332 24688999999632 2222222 345799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 96 GFILMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 96 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
.+++|+|++ ...+.++..|...+..+. ....|.++++||+|+... ...+.........++.++.+||++++|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 566777777777765543 136899999999999654 223444555555678999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy2300 174 VFERLVDIICDKMS 187 (221)
Q Consensus 174 l~~~i~~~~~~~~~ 187 (221)
++++|.+.+.+...
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876543
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=6.3e-19 Score=153.07 Aligned_cols=118 Identities=9% Similarity=0.016 Sum_probs=83.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC----cc---------cc---ceeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTS----AF---------VS---TVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~----~~---------~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
.+...+|+|+|+.|+|||||+++|++..... .. .+ ..++++......+....+.+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3456899999999999999999998543210 00 00 11233333333333345789999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 82 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
.+...+..+++.+|++++|+|+.+....... .++..+... +.|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc---cCCEEEEecCCchh
Confidence 9988888899999999999998876443333 444444443 79999999999986
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=2.1e-18 Score=145.96 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=79.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------ccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS--FTS------------------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
..++|+++|++|+|||||+++|+... +.. ....+.+++.......+....+.+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 56899999999999999999998632 100 0011223333222222333447899999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
+..|...+..++..+|++|+|+|+++..... ...++..+.. .+.|+++++||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~---~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL---RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT---TTCCEEEEEECTTSCCS
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH---cCCCEEEEEcCcCCccc
Confidence 9998888888999999999999998864322 2223333322 48999999999998653
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=1.7e-18 Score=134.61 Aligned_cols=125 Identities=12% Similarity=0.138 Sum_probs=83.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhcc-----
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYR----- 92 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 92 (221)
...++|+|+|.+|+|||||+++|++..+.. ...+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 357999999999999999999999887422 2112222222333333333 57999999998877655544443
Q ss_pred ----CCcEEEEEEECCChhhHHHH-HHHHHHHHhhCCCC--CcEEEEEeCCCCCCCcccCH
Q psy2300 93 ----GAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDN--AQVILVGNKCDMEDERVISF 146 (221)
Q Consensus 93 ----~~d~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~~~~~~~ 146 (221)
.+|++++|++++... +... ..|+..+......+ .|+++|+||+|+...+....
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 789999999987654 3322 35666665543222 49999999999964433333
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=1.2e-18 Score=151.91 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=82.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC--ccc------------cceeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS--FTS--AFV------------STVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (221)
+...+|+|+|++|+|||||+++|+... +.. ... ...+.+.......+....+.+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 467999999999999999999998421 100 000 0112222221222222346899999999999
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 83 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
+...+..++..+|++|+|+|+++.........|... ... +.|+++++||+|+..
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~~---~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EKY---KVPRIAFANKMDKTG 143 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHT---TCCEEEEEECTTSTT
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HHc---CCCEEEEEECCCccc
Confidence 888888899999999999999998777766656543 332 799999999999864
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=3.1e-18 Score=149.32 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=107.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceee------------eeE--------------------------
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGI------------DFK-------------------------- 59 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~------------~~~-------------------------- 59 (221)
...++|+|+|.+|+|||||+|+|++..+.+ ...+++.. +..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 357999999999999999999999887533 22222210 000
Q ss_pred ---------------EEEEEeCCeE--EEEEEEeCCCccc---ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHH
Q psy2300 60 ---------------VKTVFRHDKR--VKLQIWDTAGQER---YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI 119 (221)
Q Consensus 60 ---------------~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l 119 (221)
...+..+... ..+.+|||||... ....+..++..+|++|+|+|++++.+..+...|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0001111100 2589999999553 3345567889999999999999887777665555444
Q ss_pred HhhCCCCCcEEEEEeCCCCCCCcccCHH----------HHHH-----HHHH--------hCCeEEEEecC----------
Q psy2300 120 KTYSWDNAQVILVGNKCDMEDERVISFE----------RGKH-----LAES--------LGVEFFETSAK---------- 166 (221)
Q Consensus 120 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~---------- 166 (221)
.. .+.|+++|+||+|+.....++.+ .... +... ...+++++||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 33 26789999999998543311110 1111 1111 12368999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHh
Q psy2300 167 ----DNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 167 ----~~~gi~~l~~~i~~~~~~~ 185 (221)
++.|+++++++|.+.+...
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877543
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=6.4e-18 Score=131.93 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=82.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchh-------h-
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTA-------Y- 90 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~- 90 (221)
...++|+|+|.+|+|||||+++|++..+.. ..+..+.+..............+.+|||||...+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 357999999999999999999999877532 1222333333333333333467999999998765433221 1
Q ss_pred -ccCCcEEEEEEECCChhhHHHH-HHHHHHHHhhCCCC--CcEEEEEeCCCCCCCcccCH
Q psy2300 91 -YRGAMGFILMYDVTNEESFTSI-QDWITQIKTYSWDN--AQVILVGNKCDMEDERVISF 146 (221)
Q Consensus 91 -~~~~d~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~~~~~~~ 146 (221)
...+|+++||+|++.. ++... ..|+..+......+ .|+++|+||+|+......+.
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 2479999999998653 23322 35666665443222 69999999999965544333
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=6.4e-19 Score=139.51 Aligned_cols=166 Identities=14% Similarity=0.247 Sum_probs=88.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC-CCCCccc--------cceeeeeEEEEEEeCCeEEEEEEEeCCCc-------c
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADD-SFTSAFV--------STVGIDFKVKTVFRHDKRVKLQIWDTAGQ-------E 81 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~ 81 (221)
.+..++|+|+|++|+|||||+++|.+. .++.... ++............++....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345799999999999999999998875 4433321 11111111122222333468999999997 5
Q ss_pred cccccch-------hhccC-------------CcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 82 RYRTITT-------AYYRG-------------AMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 82 ~~~~~~~-------~~~~~-------------~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
.+..+.. .++.. +++++|+.+.+.. ++..... ..+.... ...++++|+||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 5554443 33322 2345555553321 2222221 2222222 36799999999999764
Q ss_pred cccC--HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcc
Q psy2300 142 RVIS--FERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188 (221)
Q Consensus 142 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~ 188 (221)
+++. .++...++..++++++++||+++ |++++|.++.+.+.+..+.
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 4332 35667788888999999999999 9999999999988765543
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=3.6e-18 Score=136.09 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=96.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc----cce---eeeeE--------------------------------
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV----STV---GIDFK-------------------------------- 59 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~----~~~---~~~~~-------------------------------- 59 (221)
....+|+|+|.+|+|||||+|+|++..+.+... ..+ ..+..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 456899999999999999999999987632211 011 00000
Q ss_pred ------------------EEEEE-eCCeEEEEEEEeCCCccc-------------ccccchhhccCCcEEEEEEECCChh
Q psy2300 60 ------------------VKTVF-RHDKRVKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDVTNEE 107 (221)
Q Consensus 60 ------------------~~~~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~~ 107 (221)
...+. .......+.||||||... +......++..+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00000 001124689999999643 3455666789999999999974322
Q ss_pred -hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecC---C---CCCHHHHHHHHHH
Q psy2300 108 -SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAK---D---NVNVKGVFERLVD 180 (221)
Q Consensus 108 -s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~gi~~l~~~i~~ 180 (221)
.......+...+. ..+.|+++|+||+|+........+.........+..++++++. + +.|+.++++.+.+
T Consensus 182 ~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 182 LANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp STTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 1111112333332 2479999999999996544322222221101112456665554 4 7889999998877
Q ss_pred HHHH
Q psy2300 181 IICD 184 (221)
Q Consensus 181 ~~~~ 184 (221)
.+..
T Consensus 259 ~~~~ 262 (315)
T 1jwy_B 259 YFKN 262 (315)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7654
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=1.1e-18 Score=141.60 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=105.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccccee---eee--------------------------------------
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG---IDF-------------------------------------- 58 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~-------------------------------------- 58 (221)
...+|+|+|.+|||||||+++|++..+.+......+ +..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 445999999999999999999999876332221110 000
Q ss_pred -----------EEEEEEe-CCeEEEEEEEeCCCcccc-------------cccchhhccCCcEEEEEEECCChhhHHHHH
Q psy2300 59 -----------KVKTVFR-HDKRVKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDVTNEESFTSIQ 113 (221)
Q Consensus 59 -----------~~~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~ 113 (221)
....+.+ ......+.+|||||...+ ..+...++..+|++|+|+|..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0001100 001235899999997655 455667889999999999875433221 2
Q ss_pred HHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 114 DWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 114 ~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
.|+..+......+.|+++|+||+|+........+....+....+.+|+++++.++.++++.+..+....
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 344444444445789999999999976544444444444444567899999999988887766544443
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.75 E-value=3.3e-17 Score=142.97 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=83.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC--cc------------ccceeeeeEE--EEEEeC-----CeEEEEEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDS--FTS--AF------------VSTVGIDFKV--KTVFRH-----DKRVKLQI 74 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~--~~------------~~~~~~~~~~--~~~~~~-----~~~~~~~i 74 (221)
.+...+|+|+|+.|+|||||+++|+... +.. .. ....+++... ..+... +..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3567899999999999999999997531 110 00 0012222222 222222 23378999
Q ss_pred EeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 75 ~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
|||||+..|...+..+++.+|++|+|+|+++.........|.. ... .+.|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence 9999999988888889999999999999998765555444433 222 3799999999999854
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=9e-18 Score=146.41 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=83.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCc--------ccc------ceeeeeE--EEEEEeCCeEEEEEEEeCCC
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADD--SFTSA--------FVS------TVGIDFK--VKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~--------~~~------~~~~~~~--~~~~~~~~~~~~~~i~D~~g 79 (221)
.+...+|+|+|++|+|||||+++|+.. .+... ... ..+++.. ...+... .+.+.+|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 356789999999999999999999852 21100 000 1122221 2223332 46799999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
+..+...+..+++.+|++|+|+|+++..+......|.. +... +.|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCcccc
Confidence 99888888889999999999999998777766655544 3333 7999999999998643
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=2.4e-18 Score=140.82 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccccee--eeeEEEEE-------------------EeCC-eEEEEEEEeCCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--IDFKVKTV-------------------FRHD-KRVKLQIWDTAG 79 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~-------------------~~~~-~~~~~~i~D~~g 79 (221)
++|+++|.+|+|||||+|+|++........+..+ .......+ .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998873222222111 11111111 1122 247899999999
Q ss_pred ccc----ccccch---hhccCCcEEEEEEECCCh
Q psy2300 80 QER----YRTITT---AYYRGAMGFILMYDVTNE 106 (221)
Q Consensus 80 ~~~----~~~~~~---~~~~~~d~vi~v~d~~~~ 106 (221)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 222222 357899999999999875
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.1e-18 Score=138.17 Aligned_cols=134 Identities=20% Similarity=0.180 Sum_probs=109.4
Q ss_pred HHHHHHhcCCCC-CccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChh-hHHHHH
Q psy2300 36 SFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE-SFTSIQ 113 (221)
Q Consensus 36 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~ 113 (221)
+|+.+++.+.|. ..+.||.+..+. ..+..++ .+.+||+ ++.+..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 778899884443 3332222 6889999 8999999999999999999999999987 788888
Q ss_pred HHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHH
Q psy2300 114 DWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG--VEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 114 ~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
.|+..+.. .+.|+++|+||+|+.+.+.+ ++...++..++ ++++++||++|.|++++|.++..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89988765 38999999999999664432 45667777777 89999999999999999988753
No 189
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.74 E-value=8.6e-18 Score=136.92 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=100.2
Q ss_pred EEEEeCCeEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhC-CCCCcE
Q psy2300 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN----------EESFTSIQDWITQIKTYS-WDNAQV 129 (221)
Q Consensus 61 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ 129 (221)
..+.+++ +.+.+|||+|++.++..|..++++++++|||||+++ ..+|.+...|+..+.... ..+.|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3444443 789999999999999999999999999999999998 889999999999887653 468999
Q ss_pred EEEEeCCCCCCCcc---c---------------------------CHHHHHHHH-----HH--------hCCeEEEEecC
Q psy2300 130 ILVGNKCDMEDERV---I---------------------------SFERGKHLA-----ES--------LGVEFFETSAK 166 (221)
Q Consensus 130 ivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 166 (221)
+||+||+|+...+. + ..+++..++ .. ..+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999843322 1 134454443 22 24567899999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcc
Q psy2300 167 DNVNVKGVFERLVDIICDKMSE 188 (221)
Q Consensus 167 ~~~gi~~l~~~i~~~~~~~~~~ 188 (221)
++.||+++|.++.+.+.+....
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l~ 389 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHLR 389 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876543
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=136.46 Aligned_cols=160 Identities=13% Similarity=0.198 Sum_probs=81.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc--------ccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc-----
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF--------VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR----- 84 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----- 84 (221)
....++|+|+|++|+|||||++.|++..++... .++.........+...+....+++||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 345789999999999999999999988753211 1111111111111112223578999999965421
Q ss_pred --c------------------cchhhccCCcEEEEEEECCCh-hhHHHHH-HHHHHHHhhCCCCCcEEEEEeCCCCCCCc
Q psy2300 85 --T------------------ITTAYYRGAMGFILMYDVTNE-ESFTSIQ-DWITQIKTYSWDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 85 --~------------------~~~~~~~~~d~vi~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 142 (221)
. +...++..+++.+++|..... .++.... .|+..+. .+.|+|+|+||+|+...+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 1 112334455543334433321 2333333 4665553 379999999999997655
Q ss_pred ccCH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 143 VISF--ERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 143 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
.+.. ..+..++..++++++++|++++.++.++|..+...
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 5443 55677778889999999999999999877766543
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=3e-17 Score=124.21 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=95.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee--------------eEEEEEEe----------------CCeE
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--------------FKVKTVFR----------------HDKR 69 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 69 (221)
...+|+|+|.+|+|||||+++|+..............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45799999999999999999998653211101100000 01111111 0122
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHH
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERG 149 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 149 (221)
+.+.+|||+|.-... ..+....+.+++|+|+.+.... ...+.. .. +.|+++|+||+|+.+......++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHHHHH
Confidence 467899998841100 0111256889999998765321 111111 11 578999999999854322345566
Q ss_pred HHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 150 KHLAESL--GVEFFETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 150 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
..++... +.+++++||++|.|+++++++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6666554 36899999999999999999998877544
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=1.4e-18 Score=140.72 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=93.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc------ccee--------------------eee--------------
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV------STVG--------------------IDF-------------- 58 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~------~~~~--------------------~~~-------------- 58 (221)
...++|+|+|.+|+|||||+++|++..+.+... |+.. .++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 356899999999999999999999987642211 1100 000
Q ss_pred ---------EEEEEEeC-CeEEEEEEEeCCCcc-------------cccccchhhccCCc-EEEEEEECCChhhHHHHHH
Q psy2300 59 ---------KVKTVFRH-DKRVKLQIWDTAGQE-------------RYRTITTAYYRGAM-GFILMYDVTNEESFTSIQD 114 (221)
Q Consensus 59 ---------~~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~ 114 (221)
....+.+. .....+.||||||.. .+..+...++..++ ++++|+|++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00001110 012569999999953 23345556665554 5556667654322122222
Q ss_pred HHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHH--HHHHhCC-eEEEEecCCCCCHHHHHHHHHH
Q psy2300 115 WITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKH--LAESLGV-EFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 115 ~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
++.. ....+.|+++|+||+|+.+......+.... +....++ +++++||+++.|++++++++.+
T Consensus 189 i~~~---~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH---HCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHH---hCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333 333589999999999996543211111110 0001232 5778999999999999999876
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.2e-15 Score=122.76 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe---------------EEEEEEEeCCCccccc--
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK---------------RVKLQIWDTAGQERYR-- 84 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-- 84 (221)
++|+++|.+|+|||||+|+|++..+.....|..+.......+.+++. ...+.+|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987743332222221111112333332 1479999999976542
Q ss_pred --cc---chhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH------------------------------
Q psy2300 85 --TI---TTAYYRGAMGFILMYDVTNE----------ESFTSIQDWITQI------------------------------ 119 (221)
Q Consensus 85 --~~---~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~l------------------------------ 119 (221)
.+ ...+++.+|++++|+|+++. +.+.++..+...+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 23357899999999999852 2333332211111
Q ss_pred ----------Hh-------------------h-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCC
Q psy2300 120 ----------KT-------------------Y-SWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 120 ----------~~-------------------~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
.. + ....+|+++++|+.|..-...........++...+.+++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 10 1 123589999999999642212335667778878889999999753
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=3.7e-16 Score=132.74 Aligned_cols=118 Identities=15% Similarity=0.081 Sum_probs=83.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC------------------CC--CccccceeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS------------------FT--SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 79 (221)
+.-+|+|+|+.++|||||..+|+... +. .......+++.....+.+.++++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 46789999999999999999986321 00 01112224444333344444557899999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
+..|..-....++-+|++|+|+|+.+.-..+....|.... .. +.|.++++||+|.+..
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~---~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR---ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT---TCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh---CCceEEEEecccchhc
Confidence 9999988888999999999999999876555555564443 33 8999999999998653
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.66 E-value=1.1e-18 Score=132.47 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=93.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeE------------EEEEEeC-CeE-----------------
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK------------VKTVFRH-DKR----------------- 69 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 69 (221)
..++|+|+|.+|+|||||+++|+...+.....++.+.++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5689999999999999999999987654434444433322 1111111 110
Q ss_pred --EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHH
Q psy2300 70 --VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFE 147 (221)
Q Consensus 70 --~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 147 (221)
..+.++|++|.-.. ...+-...+.++.++|+........ ..... . +.|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence 13445555552100 0011123455667777532111100 00011 1 5788999999998654334566
Q ss_pred HHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 148 RGKHLAESL--GVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 148 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
+...++... +.+++++||++|.|++++|++|.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 666666654 5789999999999999999999887754
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=2.3e-16 Score=127.71 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=69.5
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCH--H
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISF--E 147 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~ 147 (221)
+.+.||||||.. ......+..+|++++|+|....+.+..+.. . ....|.++|+||+|+.+...... .
T Consensus 172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~--~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKK------G--VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCT------T--SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHH------h--HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 578999999943 223344688999999999876544322211 0 12469999999999854322111 1
Q ss_pred HHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2300 148 RGKHLAESL-------GVEFFETSAKDNVNVKGVFERLVDIICD 184 (221)
Q Consensus 148 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 184 (221)
+........ +.+++++||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111111111 4689999999999999999999888755
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.62 E-value=1.5e-15 Score=134.90 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=86.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC------------CCC----cccc--ceeeeeEEEEEE------------eCC
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDS------------FTS----AFVS--TVGIDFKVKTVF------------RHD 67 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~------------~~~----~~~~--~~~~~~~~~~~~------------~~~ 67 (221)
.+...+|+|+|+.++|||||+++|+... +.. +... |+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3467899999999999999999998641 100 0011 111111111221 133
Q ss_pred eEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
..+.+.||||||+..|...+..+++.+|++|+|+|++++.++.....|..... .+.|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 47889999999999999999999999999999999999888877666655443 379999999999985
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.61 E-value=3.1e-16 Score=133.31 Aligned_cols=121 Identities=22% Similarity=0.282 Sum_probs=81.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeeEEEEEEeCC------e----------------E--
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFT---SAFVSTVGIDFKVKTVFRHD------K----------------R-- 69 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~------~----------------~-- 69 (221)
+.+..++|+|+|.+|+|||||+|+|++..+. ....++. +........+. . +
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEEEECCSSSEEECCC------------------C
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 3456789999999999999999999998763 2222222 11110000000 0 0
Q ss_pred ---------------EEEEEEeCCCccc-----------ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC
Q psy2300 70 ---------------VKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS 123 (221)
Q Consensus 70 ---------------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~ 123 (221)
..+.||||||... +...+..++..+|++|+|+|+++.........|+..+..
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 2588999999754 334556678899999999999875444555566665544
Q ss_pred CCCCcEEEEEeCCCCCCCc
Q psy2300 124 WDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 124 ~~~~p~ivv~nK~Dl~~~~ 142 (221)
.+.|+++|+||+|+....
T Consensus 217 -~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp -CGGGEEEEEECGGGSCHH
T ss_pred -cCCCEEEEEECCCccCHH
Confidence 368999999999986543
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=9.5e-16 Score=123.68 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=62.3
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHH
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERG 149 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 149 (221)
+.+.++||+|.... .......+|++++|+|+.++.....+.. .+ -..|.++|+||+|+.+..... ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 56889999995311 2335678999999999987543222211 11 146889999999985321110 011
Q ss_pred HHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 150 KHLAE----------SLGVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 150 ~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
..+.. ....+++.+||++|.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 12211 11357899999999999999999988764
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.59 E-value=3.3e-15 Score=120.81 Aligned_cols=155 Identities=18% Similarity=0.139 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCC-------------------eEEEEEEEeCCCccc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD-------------------KRVKLQIWDTAGQER 82 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 82 (221)
++|+++|.+|+|||||+++|++........+..+.........++. ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998642211111111111111112211 235799999999765
Q ss_pred cc----ccc---hhhccCCcEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q psy2300 83 YR----TIT---TAYYRGAMGFILMYDVTNE----------ESFTSIQDWITQ--------------------------- 118 (221)
Q Consensus 83 ~~----~~~---~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~--------------------------- 118 (221)
.. .+. ..+++.+|++++|+|+++. +.+.++..+...
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 222 2357899999999999751 122222111110
Q ss_pred ------------HHhh--------------------CCCCCcEEEEEeCCCC--CCC-cccCHHHHHHHHHHhCCeEEEE
Q psy2300 119 ------------IKTY--------------------SWDNAQVILVGNKCDM--EDE-RVISFERGKHLAESLGVEFFET 163 (221)
Q Consensus 119 ------------l~~~--------------------~~~~~p~ivv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (221)
+... ....+|+++++||.|. .+. .....+....++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0000 0124799999999974 222 1234566778888888999999
Q ss_pred ecCCCCCHHHHHH
Q psy2300 164 SAKDNVNVKGVFE 176 (221)
Q Consensus 164 Sa~~~~gi~~l~~ 176 (221)
||+.+.++.++.+
T Consensus 242 SAk~E~el~eL~~ 254 (368)
T 2dby_A 242 SARLEAELAELSG 254 (368)
T ss_dssp CHHHHHHHHTSCH
T ss_pred echhHHHHHHhch
Confidence 9988665555443
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.6e-14 Score=116.85 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=97.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccccc-------ccchhhc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR-------TITTAYY 91 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~ 91 (221)
....+|++||.||+|||||+|+|++........|..+.+.....+.+++ .+++++||||.-.-. ......+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 3457899999999999999999999874444444444444444444444 578999999942211 1122356
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCC--------CcccCHHHHHHHHHHhCCeEE
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMED--------ERVISFERGKHLAESLGVEFF 161 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~ 161 (221)
+.+|++++|+|++++. .........+.... ....|.++++||.|... ....+.++.......+.+..-
T Consensus 148 ~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k 225 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA 225 (376)
T ss_dssp HHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred HhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence 8899999999999874 22333333333322 24678899999999632 223455666666666555333
Q ss_pred EEecCCCCCHHHHHH
Q psy2300 162 ETSAKDNVNVKGVFE 176 (221)
Q Consensus 162 ~~Sa~~~~gi~~l~~ 176 (221)
++-...+...+++.+
T Consensus 226 pv~~~~nv~eddl~d 240 (376)
T 4a9a_A 226 EIAFRCDATVDDLID 240 (376)
T ss_dssp EEEECSCCCHHHHHH
T ss_pred CeeecccCCHHHHHH
Confidence 344445556666554
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.54 E-value=9.8e-16 Score=132.54 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCC--------------ccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD--SFTS--------------AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT 85 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 85 (221)
-+|+|+|+.++|||||..+|+.. .... ......|++.......+.++++.++++|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 46899999999999999998631 1100 0011125555555555566678899999999999998
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 86 ITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 86 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
.....++-+|++|+|+|+.+.-..+....|.... .. +.|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~-~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALR-KM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHH-HH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHH-Hc---CCCeEEEEecccccc
Confidence 8888999999999999999864444444444443 33 799999999999754
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.54 E-value=3.9e-15 Score=119.84 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=65.4
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCH--
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISF-- 146 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 146 (221)
++.+.||||||...... .....+|++++|+|++....+..+.. .. .+.|.++|+||+|+.+......
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~-----~~---~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK-----GL---MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH-----HH---HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH-----hh---hcccCEEEEECCCCCChHHHHHHH
Confidence 35789999999643322 24689999999999876543211111 01 1468899999999965322111
Q ss_pred HHHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 147 ERGKHLAESL-------GVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 147 ~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
++........ ..+++++||++|.|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122222221 347899999999999999999988764
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.53 E-value=4.1e-14 Score=109.60 Aligned_cols=108 Identities=17% Similarity=0.031 Sum_probs=67.7
Q ss_pred EEEEEEeCCCcccccccch------hhccCCcEEEEEEECCChhhHHHHHH---HH-HHHHhhCCCCCcEEEEEeCCCCC
Q psy2300 70 VKLQIWDTAGQERYRTITT------AYYRGAMGFILMYDVTNEESFTSIQD---WI-TQIKTYSWDNAQVILVGNKCDME 139 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~---~~-~~l~~~~~~~~p~ivv~nK~Dl~ 139 (221)
+.+.||||||......... ..+.. +++++++|+........... +. ..... .+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEeccccc
Confidence 5789999999765432221 23456 88999998754322222211 11 11122 268999999999986
Q ss_pred CCcccCHHHHHHH----------------------------HHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 140 DERVISFERGKHL----------------------------AESLG--VEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 140 ~~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
..... ++...+ +...+ .+++++||++++|+++++++|.+.+.
T Consensus 185 ~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 185 SEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 54321 111111 23333 47999999999999999999987764
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=3.4e-13 Score=118.11 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCC--------CCC--------ccccceeeeeE--EEEEEeC-----CeEEEEEE
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDS--------FTS--------AFVSTVGIDFK--VKTVFRH-----DKRVKLQI 74 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~--------~~~--------~~~~~~~~~~~--~~~~~~~-----~~~~~~~i 74 (221)
-++.-+|+|+|+.++|||||..+|+... ... ..+...+++.. ..++... .+.+.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 3567789999999999999999986321 000 01112233333 3333332 23588999
Q ss_pred EeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 75 ~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
+|||||..|..-....++-+|++|+|+|+...-..+....|...... +.|.++++||+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 99999999988888899999999999999986555555455555444 799999999999753
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.51 E-value=1.8e-14 Score=125.43 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=96.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-cccccee------------------------------------------
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVG------------------------------------------ 55 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~------------------------------------------ 55 (221)
-...+|+|+|.+++|||||+|+|++..+.+ .....+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 356799999999999999999999987622 1111100
Q ss_pred ------eeeE--EEEEEeCCeEEEEEEEeCCCccc-------------ccccchhhc-cCCcEEEEEEECCChhhHHHHH
Q psy2300 56 ------IDFK--VKTVFRHDKRVKLQIWDTAGQER-------------YRTITTAYY-RGAMGFILMYDVTNEESFTSIQ 113 (221)
Q Consensus 56 ------~~~~--~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~vi~v~d~~~~~s~~~~~ 113 (221)
.+.. ...+...+ ..++.|+||||... +..+...++ ..+|++++|+|+++.....+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0000 11111111 12578999999432 222333444 5789999999998753322322
Q ss_pred HHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHH-H-HHHhC-CeEEEEecCCCCCHHHHHHHHHH
Q psy2300 114 DWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKH-L-AESLG-VEFFETSAKDNVNVKGVFERLVD 180 (221)
Q Consensus 114 ~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~gi~~l~~~i~~ 180 (221)
.++..+.. .+.|+++|+||+|+............. . ....+ .+++.+||++|.|++++++.+.+
T Consensus 208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 33333433 479999999999996543332211110 0 00012 25778999999999999998876
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.46 E-value=2.1e-13 Score=107.84 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=79.9
Q ss_pred cccccccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHhC
Q psy2300 80 QERYRTITTAYYRGAMGFILMYDVTNEE-SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS-FERGKHLAESLG 157 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 157 (221)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+...+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5677788888999999999999999986 88888889887765 389999999999996543222 344556666778
Q ss_pred CeEEEEecCCCCCHHHHHHHHH
Q psy2300 158 VEFFETSAKDNVNVKGVFERLV 179 (221)
Q Consensus 158 ~~~~~~Sa~~~~gi~~l~~~i~ 179 (221)
++++++||++|.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998764
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=2.3e-13 Score=109.25 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=63.6
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHH
Q psy2300 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFER 148 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 148 (221)
++.+.|+||+|.... .......+|++++|+|+...+....+... +. ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 357899999996422 12345789999999998654322111111 11 24567778999974332222222
Q ss_pred HHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2300 149 GKHLAESL----------GVEFFETSAKDNVNVKGVFERLVDIIC 183 (221)
Q Consensus 149 ~~~~~~~~----------~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 183 (221)
.+.+.... ..+++.+|++++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23332211 347899999999999999999988654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=101.63 Aligned_cols=106 Identities=9% Similarity=-0.022 Sum_probs=70.4
Q ss_pred CCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHH----HHHHhhC-CCCCcEEEEEeCC-CCCCCcccCHHHHHH
Q psy2300 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWI----TQIKTYS-WDNAQVILVGNKC-DMEDERVISFERGKH 151 (221)
Q Consensus 78 ~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~----~~l~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~ 151 (221)
+|++..+.+|..|+.++|++|||+|.+|.+.++ ....+ ..+.... ..+.|++|++||. |++++ .+..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence 478899999999999999999999999875544 33333 2222221 3689999999995 77553 44444433
Q ss_pred HHHH----hCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 152 LAES----LGVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 152 ~~~~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.... ..+.+..|||++|+|+.+-++||.+.+..++
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 2467899999999999999999987765443
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.35 E-value=1.6e-11 Score=99.93 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=58.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeeEEEEEEeCCe---------------EEEEEEEeCCCccc-
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRHDK---------------RVKLQIWDTAGQER- 82 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 82 (221)
...+|+|+|++|+|||||+|+|++... .....|..+.......+.+.+. ...+.+||++|...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457899999999999999999999765 3444444443334444444431 13588999999432
Q ss_pred ------ccccchhhccCCcEEEEEEECCC
Q psy2300 83 ------YRTITTAYYRGAMGFILMYDVTN 105 (221)
Q Consensus 83 ------~~~~~~~~~~~~d~vi~v~d~~~ 105 (221)
........++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233445689999999999763
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=106.64 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=51.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK---------------RVKLQIWDTAGQERYR 84 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 84 (221)
..++|+++|.+|+|||||+|+|++..+.....|..+.......+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4689999999999999999999988754444444444444444444332 2359999999976533
Q ss_pred c-------cchhhccCCcEEEEEEECCChh
Q psy2300 85 T-------ITTAYYRGAMGFILMYDVTNEE 107 (221)
Q Consensus 85 ~-------~~~~~~~~~d~vi~v~d~~~~~ 107 (221)
. .+..+++.+|++++|+|+.+..
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 2 3456789999999999987643
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=99.24 Aligned_cols=108 Identities=7% Similarity=-0.019 Sum_probs=74.9
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCChhhHH---HHHHHHHHHHhh-CCCCCcEEEEEeC-CCCCCCcccCHHHHHH
Q psy2300 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFT---SIQDWITQIKTY-SWDNAQVILVGNK-CDMEDERVISFERGKH 151 (221)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~---~~~~~~~~l~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~ 151 (221)
.+|++..+.+|..|+.++|++|||+|.+|.+.++ ++..+...+... ...+.|++|++|| .|++++ .+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHH
Confidence 4678899999999999999999999999976544 222222333222 1358999999996 688654 34444433
Q ss_pred HHHH----hCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q psy2300 152 LAES----LGVEFFETSAKDNVNVKGVFERLVDIICDKM 186 (221)
Q Consensus 152 ~~~~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 186 (221)
.... ..+.+..|||++|+|+.+-++||.+.+.+++
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 2357899999999999999999998775443
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.99 E-value=4.8e-11 Score=96.83 Aligned_cols=142 Identities=11% Similarity=0.112 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC----CCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc----c---chhh
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS----FTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT----I---TTAY 90 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~ 90 (221)
.+|+++|.+|+|||||+|+|++.. -.......++++.....+..+.. +.++||||...... + ....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 579999999999999999999761 01222233455555555554433 78999999432211 1 1112
Q ss_pred c---cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEecCC
Q psy2300 91 Y---RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 91 ~---~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
+ ...+.++++++....-.+..+.. +......+.|+++++||.|..+..... .....+.+..+..+.+.++.+
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~~~ 314 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSKRY 314 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCGGG
T ss_pred HhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCchh
Confidence 2 67899999998743211111110 111112478999999999986543332 223334445565555555554
Q ss_pred CCCH
Q psy2300 168 NVNV 171 (221)
Q Consensus 168 ~~gi 171 (221)
..++
T Consensus 315 ~~~~ 318 (369)
T 3ec1_A 315 AAEF 318 (369)
T ss_dssp TTTC
T ss_pred hhhc
Confidence 4444
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=1.1e-09 Score=88.90 Aligned_cols=96 Identities=20% Similarity=0.381 Sum_probs=72.1
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q psy2300 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKH----LAE 154 (221)
Q Consensus 79 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~ 154 (221)
..+.|..+...+.+.++++++|+|+.++. ..|...+.+.. .+.|+++|+||+|+.... ...+...+ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35678888888889999999999999863 34555555543 478999999999996432 22333333 355
Q ss_pred HhCC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2300 155 SLGV---EFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 155 ~~~~---~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
..++ .++.+||++|.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6676 79999999999999999998654
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=9e-10 Score=92.38 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=85.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh------cCCCCC----ccccc-----------eeeeeEEEEEE-------------e
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYA------DDSFTS----AFVST-----------VGIDFKVKTVF-------------R 65 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~------~~~~~~----~~~~~-----------~~~~~~~~~~~-------------~ 65 (221)
....|+|+|.+|+||||++++|. +....- .+.+. .+..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 332100 00000 01111110000 0
Q ss_pred CCeEEEEEEEeCCCccccc-ccchh---h--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcE-EEEEeCCCC
Q psy2300 66 HDKRVKLQIWDTAGQERYR-TITTA---Y--YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQV-ILVGNKCDM 138 (221)
Q Consensus 66 ~~~~~~~~i~D~~g~~~~~-~~~~~---~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~Dl 138 (221)
....+.+.|+||||..... .++.. . +..+|.+++|+|+....... .....+.. ..|+ ++|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence 0023578999999965321 11111 1 23789999999998754321 22222322 2574 899999998
Q ss_pred CCCcccCHHHHHHHHHHhCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q psy2300 139 EDERVISFERGKHLAESLGVEF------------------FETSAKDNVN-VKGVFERLVDI 181 (221)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~l~~~i~~~ 181 (221)
...... ........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 643221 222233444443 3468899999 99999988765
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=4e-09 Score=86.46 Aligned_cols=116 Identities=16% Similarity=0.268 Sum_probs=60.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ceeeeeEEEEEEeCCe--EEEEEEEeCCCcccc-------c-----
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVFRHDK--RVKLQIWDTAGQERY-------R----- 84 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~-------~----- 84 (221)
.++++|+|++|+|||||++.|++..+...... ..+.......+..... ...++++|++|.... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46799999999999999999998754322111 1122222222222222 236889999873211 0
Q ss_pred --ccchh----h---------ccCC--c-EEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCC
Q psy2300 85 --TITTA----Y---------YRGA--M-GFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141 (221)
Q Consensus 85 --~~~~~----~---------~~~~--d-~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 141 (221)
..+.. + +..+ | +++|+.|+..+-+..++ .++..+. .+.|+|+|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKLD----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHHh----hCCCEEEEEcchhccch
Confidence 00101 1 1122 2 35566666543332222 2233332 48999999999997543
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.90 E-value=6.6e-11 Score=95.98 Aligned_cols=136 Identities=10% Similarity=0.095 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-----CCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcccccc----cchh---
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSF-----TSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT----ITTA--- 89 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~--- 89 (221)
.+|+++|.+|+|||||+|+|.+... ........++|.....+..... +.++||||...... +...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 5799999999999999999988631 1223344566666666655433 78999999532221 1111
Q ss_pred -h--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCeEEEEec
Q psy2300 90 -Y--YRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSA 165 (221)
Q Consensus 90 -~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (221)
+ ....+.++++++......+..+.. +......+.|+++++||+|..+.... ......+.+..+..+.+.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence 1 356788999998742211111100 11111247899999999998654332 12233333444544444443
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.87 E-value=4.3e-09 Score=81.74 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=70.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCccc------c-ceeeeeEEEEEEeCCeE--EEEEEEeCCCcccc-------c
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFV------S-TVGIDFKVKTVFRHDKR--VKLQIWDTAGQERY-------R 84 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~--~~~~i~D~~g~~~~-------~ 84 (221)
.++++|+|++|+|||||++.|++...+..-. + ..........+...... ..++++|++|.... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4899999999999999999998754322100 0 00001111222222222 36789999873110 0
Q ss_pred ccc---------------------hhhccCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCc
Q psy2300 85 TIT---------------------TAYYRGAMGFILMYDVT-NEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER 142 (221)
Q Consensus 85 ~~~---------------------~~~~~~~d~vi~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 142 (221)
.+. ...+..+++.++++|.. .+-.-.+ ...+..+.. ..++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 000 01123468888888854 2222222 233344432 38999999999975543
Q ss_pred ccCH--HHHHHHHHHhCCeEEE
Q psy2300 143 VISF--ERGKHLAESLGVEFFE 162 (221)
Q Consensus 143 ~~~~--~~~~~~~~~~~~~~~~ 162 (221)
+... .........+++.+|+
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 2211 2233334556666653
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.83 E-value=2.9e-09 Score=86.33 Aligned_cols=97 Identities=16% Similarity=0.321 Sum_probs=70.4
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q psy2300 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKH----LAE 154 (221)
Q Consensus 79 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~ 154 (221)
.++.|..+...++..++++++|+|+.++.+ .|...+.... .+.|+++|+||+|+.... ...+...+ ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467788888888899999999999999763 3333343332 378999999999996532 22233333 345
Q ss_pred HhCC---eEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 155 SLGV---EFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 155 ~~~~---~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
..++ .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666 789999999999999999887654
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.82 E-value=6.6e-09 Score=81.19 Aligned_cols=102 Identities=20% Similarity=0.154 Sum_probs=70.0
Q ss_pred EEeCCCcc-cccccchhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHH
Q psy2300 74 IWDTAGQE-RYRTITTAYYRGAMGFILMYDVTNEESFT--SIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGK 150 (221)
Q Consensus 74 i~D~~g~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 150 (221)
+-..||+- .........+..+|++++|+|+.++.+.. .+..|+ .+.|.++|+||+|+..... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 33568875 33344556789999999999999987654 333332 4799999999999965211 12233
Q ss_pred HHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q psy2300 151 HLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185 (221)
Q Consensus 151 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 185 (221)
++.+..+++++.+||+++.|++++++.+.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44445578999999999999999999988877643
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.78 E-value=7.5e-08 Score=78.90 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=83.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccce-ee--eeEEEEEEeCCeEEEEEEEeCCCcccccccch-----hhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GI--DFKVKTVFRHDKRVKLQIWDTAGQERYRTITT-----AYY 91 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-----~~~ 91 (221)
....++|+|++|||||||+|.+.+...+....-.. +. +........ .....+++||++|......... ..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 34579999999999999999999854222111111 11 111111111 1112578999998432111111 123
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCC-------CCcccCHHH----HHHHH----HHh
Q psy2300 92 RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME-------DERVISFER----GKHLA----ESL 156 (221)
Q Consensus 92 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~----~~~ 156 (221)
...+..++ ++....+ ..-..+...+... +.|+++|.||.|+. .-......+ ...+. ...
T Consensus 147 ~~~~~~~~-lS~G~~~--kqrv~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 147 YEYDFFII-ISATRFK--KNDIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GGCSEEEE-EESSCCC--HHHHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCeEE-eCCCCcc--HHHHHHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555 7765311 1111233333332 78999999999862 111112222 23332 122
Q ss_pred C---CeEEEEecC--CCCCHHHHHHHHHHHHH
Q psy2300 157 G---VEFFETSAK--DNVNVKGVFERLVDIIC 183 (221)
Q Consensus 157 ~---~~~~~~Sa~--~~~gi~~l~~~i~~~~~ 183 (221)
+ ..++.+|++ .+.|++++.+.+.+.+-
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 2 367889994 55569999998877663
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.59 E-value=4.4e-08 Score=76.50 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=36.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (221)
...++|+++|.||+|||||+|+|.+.... ...+.+++|.....+..+. .+.+|||||.-
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 45689999999999999999999987632 2334445444443333332 47899999953
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.56 E-value=2.5e-08 Score=77.05 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (221)
++++++|.+|+|||||+|+|.+.... ...++++++.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999987642 2344555554443333332 578999999653
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.49 E-value=1.8e-07 Score=77.13 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=54.5
Q ss_pred EEEEEEeCCCcccccc-----cch-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRT-----ITT-AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~-----~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.|+||+|...... +.. .....+|.+++|+|+....... .....+... -.+..||+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCccc--
Confidence 5688999999532211 111 1234579999999988654322 222333332 3566799999998543
Q ss_pred cCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 144 ISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
...+.......+.|+.+++. |+++
T Consensus 255 --gG~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred --ccHHHHHHHHHCCCEEEEEc--CCCh
Confidence 22344455567888887775 6655
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.38 E-value=1.9e-07 Score=73.61 Aligned_cols=91 Identities=11% Similarity=0.207 Sum_probs=62.3
Q ss_pred cccchhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHhCCeE
Q psy2300 84 RTITTAYYRGAMGFILMYDVTNEES-FTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI--SFERGKHLAESLGVEF 160 (221)
Q Consensus 84 ~~~~~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 160 (221)
..+.+..+..+|.+++|+|+.+|.. ...+..++..... .+.|.++|+||+|+.+.... ..+.........+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3445567889999999999997653 3344444444333 38999999999999664321 1233444445568899
Q ss_pred EEEecCCCCCHHHHHHH
Q psy2300 161 FETSAKDNVNVKGVFER 177 (221)
Q Consensus 161 ~~~Sa~~~~gi~~l~~~ 177 (221)
+.+|+.++.|++++++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999887766543
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.37 E-value=1.5e-07 Score=72.71 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=62.0
Q ss_pred CCCcccc-cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q psy2300 77 TAGQERY-RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAES 155 (221)
Q Consensus 77 ~~g~~~~-~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 155 (221)
.|||... .......+..+|++++|+|+.++.+..+.. +. .. +.|.++|+||+|+.+... .+....+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 3666422 234455789999999999999886654311 11 11 799999999999965321 1223344455
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2300 156 LGVEFFETSAKDNVNVKGVFERLVDI 181 (221)
Q Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~i~~~ 181 (221)
.+.++ .+||+++.|++++++++...
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 67888 99999999999998876543
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.35 E-value=7.1e-07 Score=73.69 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCcccccc-cch-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCC-c-EEEEEeCCCCCC
Q psy2300 69 RVKLQIWDTAGQERYRT-ITT-----AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNA-Q-VILVGNKCDMED 140 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~Dl~~ 140 (221)
.+.+.|+||+|...... +.. ..+..+|.+++|+|+..... .......+. ... | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 35688999999643211 111 11236899999999876532 112222222 234 5 899999999743
Q ss_pred CcccCHHHHHHHHHHhCCeEEEE
Q psy2300 141 ERVISFERGKHLAESLGVEFFET 163 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~ 163 (221)
.. ..........+.++..+
T Consensus 253 ~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 KG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp TT----HHHHHHHHHSSCCEEEE
T ss_pred ch----HHHHHHHHHHCCCEEEe
Confidence 21 22334555667666554
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.24 E-value=1.3e-06 Score=74.64 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=40.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccc-ceeeeeEEEEE--Ee-CCeEEEEEEEeCCCcc
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS-TVGIDFKVKTV--FR-HDKRVKLQIWDTAGQE 81 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~i~D~~g~~ 81 (221)
..+.++|+|+|.||+|||||+|+|++....-.... +.+.+.....+ .. ......+.++||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 34678999999999999999999998763211111 11222222222 11 1123468899999954
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=7.3e-07 Score=73.42 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=55.4
Q ss_pred EEEEEEEeCCCccc--cc-----ccch-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCC
Q psy2300 69 RVKLQIWDTAGQER--YR-----TITT-AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140 (221)
Q Consensus 69 ~~~~~i~D~~g~~~--~~-----~~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 140 (221)
.+.+.++||+|... .. .+.. ......+.+++|+|+........ ....+... -.+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence 35678999999543 11 1111 01224689999999876533222 22333332 356889999999753
Q ss_pred CcccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 141 ERVISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
. ...+.......+.|+.+++. |+++
T Consensus 253 ~----~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 K----GGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp C----HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred c----chHHHHHHHHHCCCEEEEEC--CCCh
Confidence 2 23445556667899888876 7665
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.18 E-value=3.5e-06 Score=66.20 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=60.3
Q ss_pred EEEEEEeCCCccc--ccc-cch-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCC
Q psy2300 70 VKLQIWDTAGQER--YRT-ITT-----AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMED 140 (221)
Q Consensus 70 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~ 140 (221)
+.+.++||||... ... +.. .....+|.+++|+|+..... .......+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5688999999765 211 111 12457899999999864322 2222222322 355 788999999743
Q ss_pred CcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2300 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 182 (221)
. ...........+.++..++ .|++++++...-.+.+
T Consensus 254 ~----~g~~~~~~~~~~~pi~~i~--~Ge~v~dl~~f~~~~~ 289 (297)
T 1j8m_F 254 K----GGGALSAVAATGATIKFIG--TGEKIDELEVFNPRRF 289 (297)
T ss_dssp T----HHHHHHHHHTTTCCEEEEE--CSSSTTCEEECCHHHH
T ss_pred c----hHHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence 2 2334556677788888776 5777766544333333
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.07 E-value=1.5e-05 Score=64.02 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=56.7
Q ss_pred hccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHhCCeEEEEecCC
Q psy2300 90 YYRGAMGFILMYDVTNEE-SFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI-SFERGKHLAESLGVEFFETSAKD 167 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 167 (221)
.+.++|.+++|.+. +|. +...+..++...+.. +.|.+||+||+|+.+.... ..+.........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 36789999988765 454 334444455444443 7888999999999654221 01122233345678999999999
Q ss_pred CCCHHHHHHHH
Q psy2300 168 NVNVKGVFERL 178 (221)
Q Consensus 168 ~~gi~~l~~~i 178 (221)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999887653
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.04 E-value=8.5e-06 Score=70.24 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDSFT 47 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~~~ 47 (221)
..|+|+|++|||||||++.+.+...+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 35999999999999999999987543
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.01 E-value=4e-07 Score=76.15 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=65.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeeEEEEEEeCCeEEEEEEEeCCCccc--ccccc--------hh
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER--YRTIT--------TA 89 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~~ 89 (221)
..+.|+++|.+|+||||+.++|..... ....++.............+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999876431 11112211110000000011112345789888632 22222 44
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCC
Q psy2300 90 YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 90 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 137 (221)
++...++.++|+|.++. ..+....|+..+... +.+++++-..++
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~ 160 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV 160 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence 56567888999999987 456666677766654 455555554444
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.88 E-value=2.3e-05 Score=62.30 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=54.7
Q ss_pred EEEEEeCCCccccccc-chh-----hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCccc
Q psy2300 71 KLQIWDTAGQERYRTI-TTA-----YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVI 144 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~~-~~~-----~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 144 (221)
.+.++|++|....... ... ..-..|-.++++|+.... ++......+... -..-++++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~~it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---VKIDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---SCCCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---cCCCEEEEeCcCCccc---
Confidence 3567899986432221 111 122478899999976543 233333333332 2345788999996322
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2300 145 SFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176 (221)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (221)
.-.........+.++..++ +|++++++-.
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~dl~~ 312 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDDLRP 312 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTCEEE
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCcccccc
Confidence 1234556677788888887 6777766543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.63 E-value=7.3e-05 Score=61.78 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=22.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.+..-|.|+|.+++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35778999999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.43 E-value=8e-05 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
+++++|++|||||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988653
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.34 E-value=0.00071 Score=55.81 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=45.5
Q ss_pred EEEEEEEeCCCcccccc-cch-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCc-EEEEEeCCCCCCC
Q psy2300 69 RVKLQIWDTAGQERYRT-ITT-----AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ-VILVGNKCDMEDE 141 (221)
Q Consensus 69 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~ 141 (221)
.+.+.|+||||.-.... +.. ..+..++.+++|+|+...... ......+.. ..+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 35688999999643321 111 124478899999998754322 222222322 234 4579999997432
Q ss_pred cccCHHHHHHHHHHhCCeEEE
Q psy2300 142 RVISFERGKHLAESLGVEFFE 162 (221)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~ 162 (221)
. ..........+.++..
T Consensus 256 ~----g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKF 272 (433)
T ss_dssp C----THHHHHHHHHCCCEEE
T ss_pred H----HHHHHHHHHHCCCeEE
Confidence 2 1233444555655433
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00013 Score=52.67 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++|+|++|||||||++.|...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 239
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.27 E-value=0.00052 Score=53.91 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|++|+|||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57999999999999999998 53
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00016 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++|+|++|||||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.20 E-value=9.5e-05 Score=58.16 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998754
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.17 E-value=0.00021 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999875
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.16 E-value=0.00022 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.|+|+|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.16 E-value=0.00022 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|++|||||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999998643
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.13 E-value=0.00024 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-++|+|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999988754
No 246
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.12 E-value=0.00023 Score=51.02 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy2300 23 KLLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~ 42 (221)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47999999999999999754
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.12 E-value=5.9e-05 Score=54.97 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
No 248
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.12 E-value=0.0039 Score=46.04 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=55.5
Q ss_pred EEEEEEeCCCc-ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHH
Q psy2300 70 VKLQIWDTAGQ-ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFER 148 (221)
Q Consensus 70 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 148 (221)
+.+.++|+|+. .. ......+..+|.+|+++..+ ..+...+...+..+.... +.++.+|+|+.|..... . ..+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~-~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK-D-GDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC-H-HHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch-H-HHH
Confidence 56889999876 32 23345677899999999864 456666667777776643 56789999999964311 1 234
Q ss_pred HHHHHHHhCCeEE
Q psy2300 149 GKHLAESLGVEFF 161 (221)
Q Consensus 149 ~~~~~~~~~~~~~ 161 (221)
..+..+..+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4455555665543
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.08 E-value=0.00029 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|++|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.06 E-value=0.0003 Score=52.04 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=22.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..-..|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988764
No 251
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.06 E-value=0.00033 Score=49.63 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998765
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.06 E-value=0.00031 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-++|+|++|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.00 E-value=0.0004 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-|+|+|++|||||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999998764
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.00 E-value=0.00038 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999988764
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.97 E-value=0.00052 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
--|+|+|++|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999864
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.95 E-value=0.00047 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|+|++|||||||.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.95 E-value=0.00043 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999988754
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.94 E-value=0.00047 Score=50.02 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.++|+|++|||||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.92 E-value=0.00049 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998764
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.00048 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4799999999999999998764
No 261
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.91 E-value=0.00055 Score=54.94 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|++|+|||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999865
No 262
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.90 E-value=0.00054 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.89 E-value=0.00057 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999764
No 264
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.88 E-value=0.00057 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.88 E-value=0.00056 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.|+|+|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988653
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.88 E-value=0.00063 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
...|+|+|+.|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988764
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.88 E-value=0.00056 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998764
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.87 E-value=0.00063 Score=48.31 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy2300 22 FKLLIIGNSSVGKTSFLFRY 41 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l 41 (221)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 269
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.87 E-value=0.00056 Score=52.95 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|+.|||||||++.+.+-.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998764
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.87 E-value=0.00065 Score=51.56 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~ 42 (221)
-.|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.86 E-value=0.00064 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.85 E-value=0.0006 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|+.|||||||++.+.+-.
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998764
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.84 E-value=0.00071 Score=48.03 Aligned_cols=22 Identities=9% Similarity=0.221 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.84 E-value=0.0008 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.84 E-value=0.00061 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.83 E-value=0.00072 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.83 E-value=0.00071 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.82 E-value=0.00072 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.82 E-value=0.00067 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 37999999999999999988764
No 280
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.81 E-value=0.00057 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-.++++|++|+|||||++.+.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999887643
No 281
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.81 E-value=0.00068 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.79 E-value=0.00072 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 283
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.78 E-value=0.00083 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999988764
No 284
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.78 E-value=0.00082 Score=49.78 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.78 E-value=0.00072 Score=51.96 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
=.++|+|++|||||||++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999998764
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.77 E-value=0.001 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
-.|+|+|++||||||+++.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.77 E-value=0.00077 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++|+|+.|||||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
No 288
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.76 E-value=0.00081 Score=49.34 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999876
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.76 E-value=0.00062 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.76 E-value=0.00084 Score=51.55 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999998754
No 291
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.76 E-value=0.00085 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999998764
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.76 E-value=0.0008 Score=52.84 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999988764
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.75 E-value=0.00079 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988653
No 294
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.75 E-value=0.00088 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 295
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.75 E-value=0.00099 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
+.|+|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 296
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.75 E-value=0.0009 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.74 E-value=0.00092 Score=51.52 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++|+|+.|||||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999986
No 298
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.73 E-value=0.00091 Score=51.67 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998764
No 299
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.72 E-value=0.001 Score=50.64 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=21.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
+....+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 334567899999999999999998865
No 300
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.72 E-value=0.0012 Score=48.40 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 17 NFDYMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.......|+|+|.+||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334567899999999999999998865
No 301
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.71 E-value=0.00096 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.71 E-value=0.00088 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998764
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.70 E-value=0.00091 Score=49.03 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..-.|+|+|++|||||||.+.|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988754
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.70 E-value=0.00096 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.|+|.|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998764
No 305
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.70 E-value=0.00094 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
-++|+|++|||||||++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999998873
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.69 E-value=0.00091 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988764
No 307
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.69 E-value=0.0011 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57999999999999999998765
No 308
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.68 E-value=0.001 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..++|+|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.68 E-value=0.0011 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998875
No 310
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.68 E-value=0.00091 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-++|+|++|||||||++.+++..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998743
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.66 E-value=0.00059 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=14.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYA-DD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~-~~ 44 (221)
.++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.66 E-value=0.00096 Score=52.62 Aligned_cols=27 Identities=19% Similarity=0.125 Sum_probs=22.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.....|+|+|++|||||||++.+.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445789999999999999999887643
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.0013 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998764
No 314
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.65 E-value=0.0027 Score=43.84 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45999999999999999887654
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.63 E-value=0.0013 Score=47.52 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.62 E-value=0.0014 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 317
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.61 E-value=0.0013 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
+.|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.61 E-value=0.0016 Score=47.82 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
....|+|+|++|||||||++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998875
No 319
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.59 E-value=0.002 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 18 FDYMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 18 ~~~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
....+-|+|+|++|||||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999988754
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0014 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.58 E-value=0.0016 Score=47.18 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999865
No 322
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=51.12 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 323
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.58 E-value=0.0014 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
...|+|+|.+|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 324
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.57 E-value=0.0013 Score=48.66 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.57 E-value=0.00061 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.|+|+|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998865
No 326
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.56 E-value=0.0015 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.55 E-value=0.0015 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998865
No 328
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.54 E-value=0.0011 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999988754
No 329
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.54 E-value=0.0015 Score=52.41 Aligned_cols=22 Identities=45% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|+.|||||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7999999999999999998865
No 330
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.54 E-value=0.0014 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999988764
No 331
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.54 E-value=0.0018 Score=49.09 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
....|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.53 E-value=0.0016 Score=49.31 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
....|+|+|+.|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999988763
No 333
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.52 E-value=0.0046 Score=45.31 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
++|.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988754
No 334
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.52 E-value=0.00092 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 48999999999999999888653
No 335
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.51 E-value=0.00094 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999988754
No 336
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.50 E-value=0.002 Score=46.58 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
...|+|+|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998765
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.50 E-value=0.002 Score=47.16 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.49 E-value=0.002 Score=46.64 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.48 E-value=0.002 Score=47.01 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998865
No 340
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.48 E-value=0.0016 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|++|+|||||++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998653
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.48 E-value=0.002 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.47 E-value=0.0016 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|++|||||||++.+.+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 7899999999999999998765
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.46 E-value=0.0016 Score=46.51 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 344
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.46 E-value=0.0016 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|+.|||||||++.+.+-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 7999999999999999988764
No 345
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.45 E-value=0.0016 Score=51.20 Aligned_cols=91 Identities=14% Similarity=0.019 Sum_probs=48.8
Q ss_pred EEEEEeCCCcccccc------------cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCC
Q psy2300 71 KLQIWDTAGQERYRT------------ITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138 (221)
Q Consensus 71 ~~~i~D~~g~~~~~~------------~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 138 (221)
.+.+.|++|...... +.+......+.+++++|+...... ...+..+... ....++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~---~~~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEA---VGLTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHH---HCCSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHH---cCCcEEEEECCcc
Confidence 356889998532111 011223457778889998755322 2222333222 1346788999986
Q ss_pred CCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2300 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKG 173 (221)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (221)
... . -.+.......+.++.++. .|+++++
T Consensus 260 ~a~-g---g~~l~i~~~~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 260 TAK-G---GVLIPIVRTLKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp SCC-C---TTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred ccc-c---cHHHHHHHHHCCCeEEEe--CCCChhh
Confidence 422 1 123344556788877775 3555544
No 346
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.45 E-value=0.002 Score=51.73 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++++|+.|||||||++.+.+-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999998764
No 347
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.45 E-value=0.0016 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++++|++|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 7899999999999999998764
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.45 E-value=0.002 Score=45.60 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 349
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.007 Score=48.16 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
++|.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988773
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.45 E-value=0.0015 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.|+|+|++|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999998764
No 351
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.45 E-value=0.003 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=21.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.....|+|+|++|||||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999998865
No 352
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0016 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
-.++++|++||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 353
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.44 E-value=0.0017 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++++|+.|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7899999999999999998764
No 354
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.43 E-value=0.0024 Score=49.83 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987754
No 355
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.41 E-value=0.0023 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
...-|+|.|++||||||+.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 356
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.40 E-value=0.002 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 357
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.39 E-value=0.0018 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|+.|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 7899999999999999998765
No 358
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.39 E-value=0.0021 Score=47.97 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.39 E-value=0.0019 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 37899999999999999998764
No 360
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.37 E-value=0.0031 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
...|+|+|.+||||||+.+.|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999988654
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.37 E-value=0.0022 Score=47.21 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 362
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.36 E-value=0.0023 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988764
No 363
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.35 E-value=0.0019 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 364
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.35 E-value=0.0024 Score=46.61 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999999865
No 365
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.35 E-value=0.0025 Score=45.56 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..++|+|.+|+|||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998764
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.33 E-value=0.0026 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
....|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999988764
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.33 E-value=0.0021 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
=.|+|+|++|||||||++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998864
No 368
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.32 E-value=0.0032 Score=45.42 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 369
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.32 E-value=0.0019 Score=51.94 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|++|||||||++.+.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.30 E-value=0.0021 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 371
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.30 E-value=0.0095 Score=49.18 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHh
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~ 42 (221)
.+..-|.|+|..++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 467888899999999999999654
No 372
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.29 E-value=0.0026 Score=46.07 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.28 E-value=0.0027 Score=46.07 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.28 E-value=0.0026 Score=45.93 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 375
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.28 E-value=0.0035 Score=46.68 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
-|+|+|+|||||+|...+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999988865
No 376
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.28 E-value=0.0023 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
|+|+|++|+|||||++.+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998653
No 377
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.28 E-value=0.0023 Score=47.99 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..-.-|+|.|+.|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567899999999999999998765
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.28 E-value=0.0027 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~ 42 (221)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 379
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.27 E-value=0.0024 Score=48.72 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 380
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.27 E-value=0.0026 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 381
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.27 E-value=0.0025 Score=45.75 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999865
No 382
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.26 E-value=0.0015 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 37899999999999999998764
No 383
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.26 E-value=0.0023 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998864
No 384
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.26 E-value=0.0027 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|+|.+||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988653
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.24 E-value=0.00096 Score=49.22 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 386
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.24 E-value=0.0022 Score=48.86 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.....|+++|++||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998653
No 387
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.23 E-value=0.0024 Score=51.89 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++|+|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 3799999999999999998874
No 388
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.23 E-value=0.0027 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.23 E-value=0.0028 Score=46.61 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 390
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.23 E-value=0.0029 Score=44.89 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 391
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.23 E-value=0.0026 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-++|+|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998854
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.21 E-value=0.0025 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.|+|+|++|||||||++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999988753
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.20 E-value=0.0029 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|+|.+||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988763
No 394
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0027 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.-.|+++|++|||||||+..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999999875
No 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.19 E-value=0.0026 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|++|||||||++.+++..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.19 E-value=0.0036 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999876
No 397
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.17 E-value=0.0031 Score=45.32 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 398
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.14 E-value=0.0037 Score=46.92 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 399
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.13 E-value=0.0031 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.|+++|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999998764
No 400
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0054 Score=45.82 Aligned_cols=27 Identities=22% Similarity=0.032 Sum_probs=22.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.+.+-|++.|.++.|||+|++++.+..
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCceEEEecCcccccHHHHHHHHhccc
Confidence 356666667999999999999999874
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.11 E-value=0.0015 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998764
No 402
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.08 E-value=0.0025 Score=48.76 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
....|+|.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988754
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.07 E-value=0.0043 Score=43.89 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 404
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.07 E-value=0.0033 Score=52.53 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=50.3
Q ss_pred EEEEEEeCCCcccccc-cc------hhhc-----cCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCC
Q psy2300 70 VKLQIWDTAGQERYRT-IT------TAYY-----RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~-~~------~~~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 137 (221)
+.+.++||.|...... +. .... ...+-++||+|+.-... .......+... -..-.+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~---~~itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEA---VGLTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHH---TCCSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhh---cCCCEEEEEcCC
Confidence 3477899999632211 10 0111 12567889999765422 11222333322 123457899999
Q ss_pred CCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2300 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175 (221)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (221)
-.. .. -.+..+....++++.++ -+|++++++.
T Consensus 450 ~ta--kg--G~~lsi~~~~~~PI~fi--g~Ge~vdDL~ 481 (503)
T 2yhs_A 450 GTA--KG--GVIFSVADQFGIPIRYI--GVGERIEDLR 481 (503)
T ss_dssp GCS--CC--THHHHHHHHHCCCEEEE--ECSSSGGGEE
T ss_pred Ccc--cc--cHHHHHHHHHCCCEEEE--ecCCChhhcc
Confidence 522 11 23455566778887764 4466776543
No 405
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.07 E-value=0.0029 Score=45.19 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346799999999999999988754
No 406
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.05 E-value=0.0022 Score=45.93 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|.|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998643
No 407
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.04 E-value=0.0037 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999875
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.04 E-value=0.0033 Score=48.93 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-++|+|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47999999999999999987653
No 409
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.03 E-value=0.0043 Score=43.28 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy2300 24 LLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~ 42 (221)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999975
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.03 E-value=0.0027 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-.++|+|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999653
No 411
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.01 E-value=0.0042 Score=46.33 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988754
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0035 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 413
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.00 E-value=0.004 Score=45.47 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.++|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988764
No 414
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0031 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+++-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 58999999999999999988753
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.99 E-value=0.004 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4799999999999999999874
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.99 E-value=0.0041 Score=45.90 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
...|+|+|.+||||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988653
No 417
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.98 E-value=0.0041 Score=45.87 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 418
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.97 E-value=0.0047 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.+.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 419
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.96 E-value=0.0061 Score=44.45 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=22.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
...+.|+|+|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999999999999999988754
No 420
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.94 E-value=0.0052 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998873
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.93 E-value=0.0045 Score=46.48 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998764
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.89 E-value=0.0062 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 423
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.88 E-value=0.023 Score=44.85 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
...|+|.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999999999999654
No 424
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.85 E-value=0.0057 Score=42.29 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 33568999999999999999987654
No 425
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.83 E-value=0.0061 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36999999999999999998864
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.78 E-value=0.0052 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999885
No 427
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.77 E-value=0.0052 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.++|.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 428
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.76 E-value=0.0053 Score=51.22 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
=.++|+|+.|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3579999999999999998875
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.76 E-value=0.0057 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..|+|+|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 430
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.75 E-value=0.0058 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.|+|.|++|+|||+|++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998763
No 431
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.74 E-value=0.0055 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.++|.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 446999999999999999999764
No 432
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.72 E-value=0.0059 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
+++|+|++|||||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998864
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.72 E-value=0.0059 Score=45.29 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-++|.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.72 E-value=0.0057 Score=47.82 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.-.|+|.|++|+|||+|++.+....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 3468999999999999999998643
No 435
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.0076 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47999999999999999998754
No 436
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.69 E-value=0.0064 Score=47.37 Aligned_cols=25 Identities=20% Similarity=-0.007 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
...-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999998764
No 437
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.67 E-value=0.0061 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999988754
No 438
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.66 E-value=0.0054 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.+++.|+||+|||+++.++...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998887653
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.61 E-value=0.008 Score=45.14 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
.....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 440
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.61 E-value=0.0081 Score=45.06 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
..++++|+|+|||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 467899999999999999998764
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.59 E-value=0.0071 Score=48.71 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy2300 24 LLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~ 42 (221)
.+|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999986
No 442
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.58 E-value=0.0093 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47999999999999999998764
No 443
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.58 E-value=0.0068 Score=46.78 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.56 E-value=0.0089 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
....++|.|++|+|||+|++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999986654
No 445
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.54 E-value=0.0093 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988754
No 446
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0074 Score=49.60 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.--|++.|+||+|||+|++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 447
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.51 E-value=0.0081 Score=46.94 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=49.7
Q ss_pred EEEEEEeCCCcccccc--cc--hhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcc
Q psy2300 70 VKLQIWDTAGQERYRT--IT--TAYYR--GAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~--~~--~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 143 (221)
+.+.|+||+|...... +. ...+. ..+.+++|+|++.. ...+..+...+.. -...-+|+||.|.....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~----l~~~giVltk~D~~~~~- 255 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS----VPVNQYIFTKIDETTSL- 255 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS----SCCCEEEEECTTTCSCC-
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc----CCCCEEEEeCCCcccch-
Confidence 4688999999664322 11 11222 36778999987643 2333333332221 12345667999974321
Q ss_pred cCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2300 144 ISFERGKHLAESLGVEFFETSAKDNVNV 171 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (221)
..........++++..+. .|+++
T Consensus 256 ---g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 256 ---GSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp ---HHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred ---hHHHHHHHHHCcCEEEEE--CCCCC
Confidence 245556667777765554 34554
No 448
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0076 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+.-.|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 449
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.51 E-value=0.0075 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.++|.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998764
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.49 E-value=0.011 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 451
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.46 E-value=0.011 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.-.++|+|++|+|||++++.+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3579999999999999999887643
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.44 E-value=0.0086 Score=49.12 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..-|+|+|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999998764
No 453
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.43 E-value=0.011 Score=48.20 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=22.6
Q ss_pred hhhcCCCeeeEEEEEcCCCCCHHHHHHHHh
Q psy2300 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKSsli~~l~ 42 (221)
.........+|++++|...|||||+++++.
T Consensus 32 ~~~~~~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 32 KDKQVYRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp ----CCTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHhhccceEEEecCCCCchhhHHHHHH
Confidence 334445678999999999999999998753
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.012 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998864
No 455
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.43 E-value=0.012 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998864
No 456
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0084 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+.--|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999864
No 457
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.42 E-value=0.0088 Score=46.94 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=51.7
Q ss_pred EEEEEEeCCCcccccc-c-------chh----hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCC
Q psy2300 70 VKLQIWDTAGQERYRT-I-------TTA----YYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~-~-------~~~----~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 137 (221)
+.+.++|+||...... + ... .....+.+++|+|+.... ..+.. ...+... -...-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~---~~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEA---VNVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHH---SCCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhc---CCCCEEEEeCCC
Confidence 3578999999532111 0 001 113478899999986331 22222 2223222 234566789999
Q ss_pred CCCCcccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2300 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGV 174 (221)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (221)
....- -.+.......+.|+.++.. |+.++++
T Consensus 261 ~~~~g----G~~l~~~~~~~~Pi~~i~~--Ge~~~dl 291 (306)
T 1vma_A 261 GTAKG----GITLAIARELGIPIKFIGV--GEKAEDL 291 (306)
T ss_dssp GCSCT----THHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred Cccch----HHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence 63321 2356667778888887755 4555554
No 458
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.42 E-value=0.013 Score=44.96 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 19 DYMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 19 ~~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.....++|.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45568999999999999999998764
No 459
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.40 E-value=0.0063 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999988754
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.37 E-value=0.0088 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.|+|.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 356999999999999999999864
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.36 E-value=0.007 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999888654
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.36 E-value=0.029 Score=40.78 Aligned_cols=85 Identities=15% Similarity=0.035 Sum_probs=55.1
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhC--CCCCcEEEEEeCCCCCCCcccCHH
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDMEDERVISFE 147 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~ 147 (221)
+.+.++|+|+.. .......+..+|.+++++..+... ..+..++..+.... ..+.++.+|+|+.|.... .. .
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~~-~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--ML-N 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--EE-H
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--HH-H
Confidence 568899999765 333445677799999999876443 56666666665543 235678999999995322 22 3
Q ss_pred HHHHHHHHhCCeEE
Q psy2300 148 RGKHLAESLGVEFF 161 (221)
Q Consensus 148 ~~~~~~~~~~~~~~ 161 (221)
+..++.+..+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555665544
No 463
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.36 E-value=0.011 Score=43.15 Aligned_cols=21 Identities=38% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 464
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.35 E-value=0.0096 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy2300 23 KLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~ 43 (221)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877754
No 465
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.34 E-value=0.0097 Score=46.27 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..++|.|++|+|||+|++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 466
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.0094 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+.--|++.|+||+|||+|++++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3456999999999999999999864
No 467
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.30 E-value=0.0061 Score=52.21 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 48999999999999999877653
No 468
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.28 E-value=0.0095 Score=47.69 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.++|.|++|+|||+|++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 469
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.28 E-value=0.012 Score=43.31 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy2300 23 KLLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~ 42 (221)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34889999999999999874
No 470
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.27 E-value=0.011 Score=43.26 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998764
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.25 E-value=0.0098 Score=47.58 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-+.|+|++|+|||||+..++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998753
No 472
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.23 E-value=0.011 Score=46.55 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
...|+|.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999764
No 473
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.23 E-value=0.01 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|.|++|+||||+++.+....
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999988653
No 474
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.22 E-value=0.0079 Score=51.59 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++++|+.|||||||++.+.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999887653
No 475
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.18 E-value=0.011 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
.++|.|++|+|||+|++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988653
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.015 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDSF 46 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~~ 46 (221)
++|+|+.|+|||||++.+.+..-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 69999999999999999988653
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.06 E-value=0.0057 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.+++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999998764
No 478
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.013 Score=48.12 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+.--|++.|+||+|||+|++++.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 3457999999999999999999865
No 479
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.03 E-value=0.0018 Score=48.57 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
++|+|+.|||||||++.+.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999999988654
No 480
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.99 E-value=0.017 Score=46.19 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYAD 43 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~ 43 (221)
...|+|+|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999987654
No 481
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.99 E-value=0.014 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (221)
++|.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998765
No 482
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.98 E-value=0.014 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.|+|.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998864
No 483
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.95 E-value=0.015 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.93 E-value=0.014 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
No 485
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.93 E-value=0.014 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
-|+|+|++|+|||+|++.+.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998653
No 486
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.88 E-value=0.013 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998764
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.88 E-value=0.016 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|+|++|||||||..+|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999988753
No 488
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.013 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.176 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 20 YMFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 20 ~~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
+.--|++.|+||+|||+|++++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4457999999999999999999864
No 489
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.86 E-value=0.014 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.++|+|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999988754
No 490
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.85 E-value=0.015 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-|+|+|++|+|||+|++.+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 491
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.83 E-value=0.065 Score=42.00 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy2300 24 LLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (221)
+++.|++|+|||++++.+....
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 4555669999999999997543
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.82 E-value=0.018 Score=45.19 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988753
No 493
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.81 E-value=0.018 Score=43.88 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
..|+|.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 568999999999999999988654
No 494
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.80 E-value=0.015 Score=49.12 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy2300 24 LLIIGNSSVGKTSFLFRYA 42 (221)
Q Consensus 24 i~vvG~~~~GKSsli~~l~ 42 (221)
++|+|++|||||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 495
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.80 E-value=0.016 Score=46.38 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
.-.|+|.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 496
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.78 E-value=0.019 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q psy2300 23 KLLIIGNSSVGKTSFLFRYADDSF 46 (221)
Q Consensus 23 ~i~vvG~~~~GKSsli~~l~~~~~ 46 (221)
.++|+|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999997543
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.77 E-value=0.022 Score=42.86 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
..|+|.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 498
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.75 E-value=0.23 Score=36.94 Aligned_cols=89 Identities=9% Similarity=0.110 Sum_probs=59.6
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCCCcccCHHHH
Q psy2300 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERG 149 (221)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 149 (221)
+.+.++|+|+.- .......+..+|.+++++..+ ..+...+..++..+.....+...+.+|+|+.+.... ...+
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~--~~~~-- 191 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR--ITSD-- 191 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT--SCHH--
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC--CCHH--
Confidence 568899998753 234455678899999999864 566777777777776654335668899999986432 3333
Q ss_pred HHHHHHhCCeEEEEecC
Q psy2300 150 KHLAESLGVEFFETSAK 166 (221)
Q Consensus 150 ~~~~~~~~~~~~~~Sa~ 166 (221)
.+.+..+.+++.+-..
T Consensus 192 -~~~~~~~~~v~~~ip~ 207 (245)
T 3ea0_A 192 -EIEKVIGRPISKRIPQ 207 (245)
T ss_dssp -HHHHHHTSCEEEEECC
T ss_pred -HHHHHhCCCeEEECCC
Confidence 3334467777665443
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.75 E-value=0.016 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy2300 22 FKLLIIGNSSVGKTSFLFRYADD 44 (221)
Q Consensus 22 ~~i~vvG~~~~GKSsli~~l~~~ 44 (221)
-.++|.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988764
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.74 E-value=0.018 Score=46.20 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q psy2300 21 MFKLLIIGNSSVGKTSFLFRYADDS 45 (221)
Q Consensus 21 ~~~i~vvG~~~~GKSsli~~l~~~~ 45 (221)
...|+|.|++|+|||++.+.+....
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999987543
Done!