RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2300
(221 letters)
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 319 bits (819), Expect = e-112
Identities = 153/198 (77%), Positives = 173/198 (87%), Gaps = 1/198 (0%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
FDYMFK+LIIGNSSVGKTSFLFRYADDSFT AFVSTVGIDFKVKT++R+DKR+KLQ
Sbjct: 1 GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
IWDTAG ERYRTITTAYYRGAMGFILMYD+TNEESF ++QDW TQIKTYSWDNAQV+LVG
Sbjct: 61 IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESL-DS 192
NKCDMEDERV+S ERG+ LA+ LG EFFE SAKDN+NVK FERLVD+IC+KMSESL +
Sbjct: 121 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTA 180
Query: 193 DPNLVAGPKGTRLTEQPQ 210
DP + +G +LT+Q
Sbjct: 181 DPAVTGAKQGPQLTDQQA 198
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 314 bits (806), Expect = e-110
Identities = 142/189 (75%), Positives = 160/189 (84%), Gaps = 1/189 (0%)
Query: 1 MAGVGETK-WQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK 59
M + DYMFKLL+IGNSSVGKTSFLFRYADDSFT AFVSTVGIDFK
Sbjct: 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
Query: 60 VKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI 119
VKTV+RHDKR+KLQIWDTAGQERYRTITTAYYRGAMGF+LMYD+ N+ESF ++QDW TQI
Sbjct: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
Query: 120 KTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
KTYSWDNAQVILVGNKCD+EDERV+ E G+ LA+ LG EFFE SAK+N+NVK VFERLV
Sbjct: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
Query: 180 DIICDKMSE 188
D+IC+KM+E
Sbjct: 181 DVICEKMNE 189
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 310 bits (797), Expect = e-109
Identities = 90/207 (43%), Positives = 136/207 (65%), Gaps = 2/207 (0%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
+ +DY+FKLL+IGNS VGK+ L R++DD++T+ ++ST+G+DFK+KTV K VKLQI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAGQER+RTIT++YYRG+ G I++YDVT++ESF ++ W+ +I Y+ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDP 194
KCD++D+RV+ ++ K A++ + F ETSA D+ NV+ F + I + MS+ ++
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 195 NLVAGPKGTRLTEQPQRNNPINPNCNC 221
KG + N C C
Sbjct: 182 TQKKEDKGNVNLKGQSLTN--TGGCCC 206
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 309 bits (795), Expect = e-109
Identities = 145/180 (80%), Positives = 162/180 (90%)
Query: 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR 69
+ NFDYMFKLLIIGNSSVGKTSFLFRYADD+FT AFVSTVGIDFKVKTV+RH+KR
Sbjct: 12 ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR 71
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQV 129
VKLQIWDTAGQERYRTITTAYYRGAMGFILMYD+TNEESF ++QDW TQIKTYSWDNAQV
Sbjct: 72 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQV 131
Query: 130 ILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
ILVGNKCDME+ERV+ E+G+ LAE LG +FFE SAK+N++V+ FERLVD ICDKMS+S
Sbjct: 132 ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 307 bits (790), Expect = e-108
Identities = 95/181 (52%), Positives = 137/181 (75%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
+ +DY+FKLL+IG+S VGKT LFR+++D+F S F+ST+GIDFK++T+ KR+KLQI
Sbjct: 2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAGQER+RTITTAYYRGAMG +L+YD+TNE+SF +I++WI I+ ++ + + +++GN
Sbjct: 62 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDP 194
KCD+ D+R +S ERG+ LA G++F ETSAK N+NV+ F L I KM ++ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATA 181
Query: 195 N 195
Sbjct: 182 A 182
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 304 bits (780), Expect = e-106
Identities = 85/193 (44%), Positives = 132/193 (68%)
Query: 9 WQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 68
+ + +DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K
Sbjct: 4 GSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ 128
+KLQIWDTAGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N
Sbjct: 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
+LVGNKCD+ ++V+ + K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183
Query: 189 SLDSDPNLVAGPK 201
+ + K
Sbjct: 184 GATAGGAEKSNVK 196
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 301 bits (774), Expect = e-105
Identities = 84/174 (48%), Positives = 129/174 (74%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
+ + +DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K +KL
Sbjct: 25 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
QIWDTAGQER+RTIT++YYRGA G I++YDVT++ESF +++ W+ +I Y+ +N +LV
Sbjct: 85 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 144
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
GNKCD+ ++V+ + K A+SLG+ F ETSAK+ NV+ F + I +M
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 300 bits (771), Expect = e-105
Identities = 81/179 (45%), Positives = 129/179 (72%), Gaps = 1/179 (0%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
+++D++FKLLIIG+S VGK+S L R+AD++F+ ++++T+G+DFK++TV + ++VKLQI
Sbjct: 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAGQER+RTIT+ YYRG G I++YDVT+ ESF +++ W+ +I D+ ILVGN
Sbjct: 63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGN 121
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSD 193
K D + +V+ E A +G++ FETSAK+NVNV+ +F + +++ ++L
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 300 bits (771), Expect = e-105
Identities = 82/189 (43%), Positives = 131/189 (69%), Gaps = 11/189 (5%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV---------- 63
+D ++DY+ K L +G+S VGKTS L++Y D F S F++TVGIDF+ K V
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 64 FRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS 123
+R+ LQ+WDTAG ER+R++TTA++R AMGF+L++D+TNE+SF ++++WI+Q++ ++
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 124 W-DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+ +N ++L GNK D+ED+R + E + LAE G+ +FETSA + N+ E L+D+I
Sbjct: 124 YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
Query: 183 CDKMSESLD 191
+M S+D
Sbjct: 184 MKRMERSVD 192
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 300 bits (771), Expect = e-105
Identities = 95/218 (43%), Positives = 143/218 (65%), Gaps = 5/218 (2%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
M+G+ T +++D + K+L+IG+S VGK+ L R+ +D F +F++T+GIDFK+
Sbjct: 1 MSGL-RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI 59
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK 120
KTV + K+VKLQ+WDTAGQER+RTITTAYYRGAMG IL+YDVT+E +FT+I+ W +
Sbjct: 60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVN 119
Query: 121 TYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180
++ D AQ++LVGNK DME RV++ ++G+ LA+ LG+ F E+SAK++ NV +F L
Sbjct: 120 EHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178
Query: 181 IICDKMSESLDSDPNLVAGPKGTRLTEQPQRNNPINPN 218
+I +K+ + K ++ N N
Sbjct: 179 LIQEKIDSNKLVGVG---NGKEGNISINSGSGNSSKSN 213
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 300 bits (770), Expect = e-105
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 1/189 (0%)
Query: 5 GETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVF 64
G D+ +D++FKL+++G++SVGKT + R+ +F+ ST+G+DF +KT+
Sbjct: 13 GLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLE 72
Query: 65 RHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW 124
KRVKLQIWDTAGQER+RTIT +YYR A G IL YD+T SF S+ WI ++ Y+
Sbjct: 73 IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG 132
Query: 125 DNAQVILVGNKCDMEDERVISFERGKHLAESLGV-EFFETSAKDNVNVKGVFERLVDIIC 183
N +L+GNK D+ + R +S + LAE + ETSAKD+ NV+ F R+ +
Sbjct: 133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
Query: 184 DKMSESLDS 192
+ L S
Sbjct: 193 MRHGGPLFS 201
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 299 bits (767), Expect = e-104
Identities = 83/175 (47%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
+ + D+ +++IIG+ VGKTS + R+ DD+F A STVG+DFK+KTV K+++L
Sbjct: 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRL 77
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
QIWDTAGQER+ +IT+AYYR A G IL+YD+T +E+F + W+ I Y+ ++A+++LV
Sbjct: 78 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLV 137
Query: 133 GNKCDMEDERVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLVDIICDKM 186
GNK D E +R I+ ++G+ A+ + G+ F E SAKDN NV +F +LVD I KM
Sbjct: 138 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 300 bits (769), Expect = e-104
Identities = 78/208 (37%), Positives = 134/208 (64%), Gaps = 15/208 (7%)
Query: 1 MAGVGETKWQ----KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI 56
M ++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGI
Sbjct: 1 MGSSHHHHHHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 60
Query: 57 DFKVKTVFRHDK----------RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNE 106
DF+ K V + + +V LQ+WDTAGQER+R++TTA++R AMGF+LM+D+T++
Sbjct: 61 DFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ 120
Query: 107 ESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSA 165
+SF ++++W++Q++ ++ +N ++L+GNK D+ D+R ++ + + LA+ G+ +FETSA
Sbjct: 121 QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180
Query: 166 KDNVNVKGVFERLVDIICDKMSESLDSD 193
NV+ E L+D+I +M + ++
Sbjct: 181 ATGQNVEKAVETLLDLIMKRMEQCVEKT 208
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 297 bits (762), Expect = e-104
Identities = 77/178 (43%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRHDKRVK 71
+ +D FK++++G+S VGKT L R+ D +F + F+STVGIDF+ K + +VK
Sbjct: 2 SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 61
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVIL 131
LQ+WDTAGQER+R++T AYYR A +L+YDVTN+ SF +IQ W+T+I Y+ + ++L
Sbjct: 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
+GNK D ERV+ E G+ LA+ G+ F ETSAK +NV F + + + ++
Sbjct: 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 297 bits (763), Expect = e-104
Identities = 71/187 (37%), Positives = 122/187 (65%), Gaps = 1/187 (0%)
Query: 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR 69
+ +++D++FK+++IGN+ VGKT + R+ F +T+G+DF +KTV + ++
Sbjct: 15 VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQV 129
VKLQIWDTAGQER+R+IT +YYR A IL YD+T EESF + +W+ +I+ Y+ +
Sbjct: 75 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT 134
Query: 130 ILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE- 188
+LVGNK D+ + R +S +R + +E+ + + ETSAK++ NV+ +F L + + +
Sbjct: 135 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN 194
Query: 189 SLDSDPN 195
+L ++ +
Sbjct: 195 TLVNNVS 201
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 297 bits (762), Expect = e-104
Identities = 70/190 (36%), Positives = 104/190 (54%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
M Y+FK +IIG++ VGK+ L ++ D F T+G++F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA 60
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK 120
+ V K++KLQIWDTAGQE +R+IT +YYRGA G +L+YD+T E+F + W+ +
Sbjct: 61 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 120
Query: 121 TYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180
+S N ++L+GNK D+E R + E G+ A G+ F ETSAK NV+ F
Sbjct: 121 QHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180
Query: 181 IICDKMSESL 190
I K+ + L
Sbjct: 181 EIYRKIQQGL 190
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 296 bits (761), Expect = e-103
Identities = 69/192 (35%), Positives = 115/192 (59%), Gaps = 4/192 (2%)
Query: 1 MAGVGETKW----QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI 56
M ++++++FK+++IG S VGKT+ L R+ + F+ +T+G+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV 60
Query: 57 DFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWI 116
+F +TV VK QIWDTAG ERYR IT+AYYRGA+G +L++D+T +++ ++ W+
Sbjct: 61 EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWL 120
Query: 117 TQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFE 176
++ ++ V+LVGNK D+ R + E + AE+ G+ F ETSA D+ NV+ FE
Sbjct: 121 KELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180
Query: 177 RLVDIICDKMSE 188
++ I K+S+
Sbjct: 181 TVLKEIFAKVSK 192
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 296 bits (760), Expect = e-103
Identities = 68/198 (34%), Positives = 120/198 (60%), Gaps = 3/198 (1%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N ++LVGNK D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDP--- 194
+ R + + + AE + F ETSA D+ NV+ F+ ++ I +S+ +D
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181
Query: 195 NLVAGPKGTRLTEQPQRN 212
+ G ++ P +
Sbjct: 182 DESPGNNVVDISVPPTTD 199
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 296 bits (760), Expect = e-103
Identities = 79/219 (36%), Positives = 128/219 (58%), Gaps = 9/219 (4%)
Query: 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVK 71
+ ++D +FK+++IG+S VGK++ L R+ + F ST+G++F +T+ KR+K
Sbjct: 4 EDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIK 63
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVIL 131
QIWDTAGQERYR IT+AYYRGA+G +++YD++ S+ + W+++++ + DN V L
Sbjct: 64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGL 123
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE--- 188
+GNK D+ R + E K A+ + F ETSA ++ NV FE L++ I K+S+
Sbjct: 124 IGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQM 183
Query: 189 -----SLDSDPNLVAGPKGTRLTEQPQRNNPINPN-CNC 221
S + + N + P G ++ P N N NC
Sbjct: 184 DLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNC 222
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 292 bits (750), Expect = e-102
Identities = 89/171 (52%), Positives = 130/171 (76%), Gaps = 1/171 (0%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D + K+L+IG+S VGK+ L R+ +D F +F++T+GIDFK+KTV + K+VKLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
GQER+RTITTAYYRGAMG IL+YD+T+E +FT+I+ W + ++ D AQ++LVGNK DM
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
E RV++ ++G+ LA+ LG+ F E+SAK++ NV +F L +I +K+ +
Sbjct: 121 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 292 bits (750), Expect = e-102
Identities = 66/182 (36%), Positives = 109/182 (59%), Gaps = 1/182 (0%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
+ +D++FK L+IGN+ GK+ L ++ + F T+G++F K + K VKLQI
Sbjct: 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAGQER+R++T +YYRGA G +L+YD+T+ E++ ++ +W+T + + N +IL GN
Sbjct: 64 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE-SLDSD 193
K D++ +R ++F A+ + F ETSA NV+ F + I +K+ LD +
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183
Query: 194 PN 195
Sbjct: 184 RM 185
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 292 bits (751), Expect = e-102
Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 1/181 (0%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
D++FK L+IG++ GK+ L ++ ++ F T+G++F + V K VKLQ
Sbjct: 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 77
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
IWDTAGQER+R++T +YYRGA G +L+YD+T+ E++ S+ W+T +T + N VIL G
Sbjct: 78 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE-SLDS 192
NK D++ ER ++F A+ + F ETSA NV+ F + I +K+ LD
Sbjct: 138 NKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDP 197
Query: 193 D 193
+
Sbjct: 198 E 198
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 291 bits (748), Expect = e-101
Identities = 65/182 (35%), Positives = 109/182 (59%), Gaps = 6/182 (3%)
Query: 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR 69
+ A + +K+++ G+++VGK+SFL R + F +T+G+DF++KT+ +R
Sbjct: 17 RGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER 76
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQV 129
LQ+WDTAGQER+R+I +Y+R A G +L+YDVT E+SF +I++W+ I+ + + +
Sbjct: 77 TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPI 136
Query: 130 ILVGNKCDMED------ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
+LVGNK D+ D ++ + G+ LA + G F ETSAKD N+ L +
Sbjct: 137 MLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196
Query: 184 DK 185
+
Sbjct: 197 KR 198
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 291 bits (746), Expect = e-101
Identities = 80/191 (41%), Positives = 111/191 (58%), Gaps = 4/191 (2%)
Query: 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVK 71
D++ K+LIIG S VGK+S L R+ DD+F +T+G+DFKVKT+ + K
Sbjct: 6 SGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK 65
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQV-I 130
L IWDTAGQER+RT+T +YYRGA G IL+YDVT ++F + +W+ +++TY N V +
Sbjct: 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESL 190
LVGNK D E+ R + G A + F E SAK V+ FE LV+ I
Sbjct: 126 LVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 184
Query: 191 DSDPNLVAGPK 201
+ N +GP
Sbjct: 185 SENQN--SGPS 193
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 289 bits (742), Expect = e-100
Identities = 73/209 (34%), Positives = 116/209 (55%), Gaps = 6/209 (2%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
N FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ V+L
Sbjct: 8 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 67
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
Q+WDTAG ER+R++ +Y R + +++YD+TN SF WI ++T + ++LV
Sbjct: 68 QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 127
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDS 192
GNK D+ D+R +S E G+ A+ L V F ETSAK NVK +F R+ + S S
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187
Query: 193 DPNLVAGPKGTRLTEQPQRNNPINPNCNC 221
+++ + + + P++
Sbjct: 188 REDMI------DIKLEKPQEQPVSEGGCL 210
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 285 bits (731), Expect = 3e-99
Identities = 65/170 (38%), Positives = 110/170 (64%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K
Sbjct: 21 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 80
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
QIWDTAG ERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N ++LV
Sbjct: 81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
GNK D+ R + + + AE G+ F ETSA D+ NV+ F+ ++ I
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 284 bits (729), Expect = 3e-99
Identities = 62/168 (36%), Positives = 103/168 (61%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
+ Y FK++++G VGKTS + RY ++ F ++T+G F K + KRV L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQER+ + YYR + G IL+YD+T+E+SF +++W+ +++ + + +VGNK
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICD 184
D+E ER +S + + AES+G + + TSAK N ++ +F L + +
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 285 bits (732), Expect = 5e-99
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 1/185 (0%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG-IDFKVKTVFRHDKRVK 71
+ + + +K+ +IG+ VGKT+++ R D F + +TVG ++ V + +K
Sbjct: 3 GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVIL 131
+WDTAGQE+ + YY GA G IL +DVT+ + ++ W+ + + + A +++
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLD 191
NK D+++ + IS + + + E+FE SAK N F L I +
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182
Query: 192 SDPNL 196
S+ NL
Sbjct: 183 SNVNL 187
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 283 bits (727), Expect = 8e-99
Identities = 64/170 (37%), Positives = 103/170 (60%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
A N+ Y+FK +IIG+ VGK+ L ++ + F + T+G++F + + +++KL
Sbjct: 7 TAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKL 66
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
QIWDTAGQER+R +T +YYRGA G +++YD+T ++ + W+T + + N +IL+
Sbjct: 67 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI 126
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
GNK D+E +R +++E K AE G+ F E SAK NV+ F I
Sbjct: 127 GNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 282 bits (725), Expect = 1e-98
Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 1/167 (0%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
+ K++++GN +VGK+S + RY FT + T+G+DF + + +D+ V+L +WDTA
Sbjct: 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
GQE + IT AYYRGA +L++ T+ ESF +I W ++ + LV NK D+
Sbjct: 63 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDL 121
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
D+ I E + LA+ L + F+ TS K+++NV VF+ L + K
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 279 bits (717), Expect = 7e-97
Identities = 62/210 (29%), Positives = 113/210 (53%), Gaps = 9/210 (4%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+ K++I+G+S VGKTS + +Y + F++ + +T+G DF K V D+ V +QIW
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY----SWDNAQVIL 131
DTAGQER++++ A+YRGA +L++DVT +F ++ W + +N ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLD 191
+GNK D+E+ +V + + +FETSAK+ +NV+ F+ + + +E
Sbjct: 123 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
Query: 192 SDPNLVAGPKGTRLTEQPQRNNPINPNCNC 221
+ P+ +L + +R +C+C
Sbjct: 183 YNEF----PEPIKLD-KNERAKASAESCSC 207
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 277 bits (712), Expect = 2e-96
Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 5/175 (2%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
+ +FK+++IG+S+VGKT +R+ F +T+G+DF+ + V +R+K+
Sbjct: 12 VPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKI 71
Query: 73 QIWDTAGQERYR-TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDN-AQVI 130
Q+WDTAGQER+R ++ YYR + +YD+TN SF S+ WI + K + N I
Sbjct: 72 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI 131
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAK---DNVNVKGVFERLVDII 182
LVGNKCD+ + + + A++ + FETSAK DN +V+ +F L +
Sbjct: 132 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 276 bits (708), Expect = 7e-96
Identities = 71/171 (41%), Positives = 106/171 (61%)
Query: 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVK 71
N FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ V+
Sbjct: 5 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 64
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVIL 131
LQ+WDTAGQER+R++ +Y R + +++YD+TN SF WI ++T + ++L
Sbjct: 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
VGNK D+ D+R +S E G+ A+ L V F ETSAK NVK +F R+ +
Sbjct: 125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 273 bits (700), Expect = 1e-94
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK-RVKLQIW 75
+ K++++G+ + GKTS +A ++F + T+G+DF ++ + V LQIW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD---NAQVILV 132
D GQ + Y GA G +L+YD+TN +SF +++DW T +K S + V LV
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSE 188
GNK D+E R I E+ + G SAK +V F+++ +I+ K+++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 270 bits (692), Expect = 3e-93
Identities = 57/177 (32%), Positives = 100/177 (56%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
+ K+ ++G++ VGK+S + R+ D F T+G F KTV ++ K
Sbjct: 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
IWDTAGQER+ ++ YYRG+ +++YD+T ++SF +++ W+ ++K + +N + +
Sbjct: 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
GNKCD+ D R + + K AES+G ETSAK+ +N++ +F+ + I
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 265 bits (681), Expect = 8e-92
Identities = 58/161 (36%), Positives = 99/161 (61%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ ++G++ VGK+S ++R+ +DSF T+G F KTV ++ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R + YYRG+ I++YD+T EE+F+++++W+ +++ + + V + GNKCD+ D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
R + K A+S+ F ETSAK+ +N+ +F + I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 266 bits (683), Expect = 2e-91
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 5/200 (2%)
Query: 12 DAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVK 71
AA FKL+++G+ GKT+F+ R+ F +V+T+G++ + +K
Sbjct: 6 SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 65
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVIL 131
+WDTAGQE++ + YY A I+M+DVT+ ++ ++ +W + +N ++L
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVL 124
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLD 191
GNK D++D +V + +++++ SAK N N + F L + +
Sbjct: 125 CGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182
Query: 192 SDPNLVAGPKGTRLTEQPQR 211
+ P L P +
Sbjct: 183 AMPALA--PPEVVMDPALAA 200
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 260 bits (666), Expect = 2e-89
Identities = 64/177 (36%), Positives = 97/177 (54%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
AA N KL+++G+ GK+S + R+ D F ST+G F +T+ +D VK
Sbjct: 4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKF 63
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
+IWDTAGQERY ++ YYRGA I+++DVTN+ SF + W+ +++ N + L
Sbjct: 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALA 123
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
GNK D+ D R ++ E + A+ G+ F ETSAK NVK +F + +
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 258 bits (661), Expect = 1e-88
Identities = 64/178 (35%), Positives = 107/178 (60%), Gaps = 7/178 (3%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FRHDKRVKLQI 74
+ K++I+G+S VGKTS + RY +D ++ + +T+G DF K V DK +Q+
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW----DNAQVI 130
WDTAGQER++++ A+YRGA +L+YDVTN SF +I+ W + ++ + +
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122
Query: 131 LVGNKCDMED-ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDIICDKM 186
++GNK D E+ ++++S + + LA+SLG + F TSAK+ +NV FE + +
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 257 bits (660), Expect = 4e-88
Identities = 44/202 (21%), Positives = 89/202 (44%), Gaps = 9/202 (4%)
Query: 3 GVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYAD--DSFTSAFVSTVGIDFKV 60
K + D K+ ++G ++VGK++ + + F + T G++ V
Sbjct: 2 AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV 61
Query: 61 KTVFRHDKRVKLQIW--DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ 118
V D V ++++ DTAG + Y+ + Y+ G IL++DV++ ESF S + W
Sbjct: 62 APVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFEL 121
Query: 119 IKTYSWD---NAQVILVGNKCDMEDER-VISFERGKHLAESLGVEFFETSAK-DNVNVKG 173
+K+ D + +LV NK D+ +R + + + A + ++FF+ SA +
Sbjct: 122 LKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADA 181
Query: 174 VFERLVDIICDKMSESLDSDPN 195
F + + + + +
Sbjct: 182 PFLSIATTFYRNYEDKVAAFQD 203
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 256 bits (656), Expect = 5e-88
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
+FK++++G+ VGK+S + RY + F + T+G++F K + V +QIWD
Sbjct: 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS----WDNAQVILV 132
TAGQER+R++ T +YRG+ +L + V + +SF ++ +W + Y+ ++ +++
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 133 GNKCDMEDERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDIICDKM 186
GNK D+ + R +S E + G +FETSAKD NV FE V +
Sbjct: 123 GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 253 bits (648), Expect = 6e-87
Identities = 63/163 (38%), Positives = 99/163 (60%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
FKL+++G S+VGK+S + R+ F ST+G F +TV D VK +IWDTAG
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
QERY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
++R + F+ + A+ + F ETSAK ++NV +F + +
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 242 bits (619), Expect = 6e-82
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 3/197 (1%)
Query: 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR 69
QN + K++++G+ VGK++ ++ D F + T ++ K V +
Sbjct: 3 ANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEE 61
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQ 128
V++ I DTAGQE Y I Y+R GF+ ++ +T ESF + D+ QI +N
Sbjct: 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 121
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMS 187
+LVGNK D+ED+R +S E K+ AE V + ETSAK NV VF L+ +I KM
Sbjct: 122 FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 181
Query: 188 ESLDSDPNLVAGPKGTR 204
+S + + R
Sbjct: 182 DSKEKNGKKKRKSLAKR 198
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 240 bits (615), Expect = 1e-81
Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV 70
QN + K++++G+ VGK++ ++ D F + T ++ K V + V
Sbjct: 8 GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEV 66
Query: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQV 129
++ I DTAGQE Y I Y+R GF+ ++ +T ESF + D+ QI +N
Sbjct: 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126
Query: 130 ILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSE 188
+LVGNK D+ED+R +S E K+ AE V + ETSAK NV VF L+ +I KM +
Sbjct: 127 LLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186
Query: 189 S 189
S
Sbjct: 187 S 187
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 238 bits (610), Expect = 9e-81
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 2/177 (1%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
D +FK++++G S VGK++ + SA D + + + V L +
Sbjct: 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76
Query: 75 WDTAGQERYR-TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILV 132
+D Q + + F++++ VT+ SF+ + + + +++ + VILV
Sbjct: 77 YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136
Query: 133 GNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
GNK D+ R +S E G+HLA +L + ETSA + N + +FE V I + +
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 235 bits (602), Expect = 2e-79
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 4/183 (2%)
Query: 10 QKDAADQNFDYM--FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHD 67
+++ Q + K++I+G VGKTS ++ + F+ + TV + K V
Sbjct: 11 RENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGK 69
Query: 68 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDN 126
L + DTAGQ+ Y + ++ G G++L+Y VT+ SF I+ ++ + +
Sbjct: 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129
Query: 127 AQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
V+LVGNK D+ ER + GK LAES G F E+SA++N +G+F +++ I
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189
Query: 187 SES 189
+
Sbjct: 190 NSY 192
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 228 bits (585), Expect = 3e-77
Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 2/164 (1%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+FK++++G S VGK++ + A D + + + V L ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 81 ERYR-TITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDM 138
+ + F++++ VT+ SF+ + + + +++ + VILVGNK D+
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
R +S E G+HLA +L + ETSA + N + +FE V I
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 227 bits (582), Expect = 1e-76
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 2/171 (1%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
K+ I+G SVGK+S ++ + F ++ T+ F K + + + LQ+ DTAG
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAG 63
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDM 138
Q+ Y Y G+IL+Y VT+ +SF I+ ++ ++LVGNK D+
Sbjct: 64 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
ERVIS+E GK LAES F E+SAK+N VF R++
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGAC 174
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 226 bits (579), Expect = 3e-76
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 2/174 (1%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
KL+++G VGK++ ++ F S + T+ D K +L I DTA
Sbjct: 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTA 65
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCD 137
GQE + + Y R GF+L++ + + +SF + TQI D+ V+LVGNK D
Sbjct: 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLD 191
+E +R + S V +FE SAK +NV FE+LV + + L
Sbjct: 126 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELP 179
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 227 bits (580), Expect = 5e-76
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 40/207 (19%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVK----- 71
+K +++G SSVGK+S + R D+F +T+G F V +D +K
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 72 --------------------------------LQIWDTAGQERYRTITTAYYRGAMGFIL 99
IWDTAGQERY +I YYRGA I+
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 100 MYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVE 159
++D++N + + W+ Q+K S N +ILV NK D + + A+ +
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDKNK-FQVDILEVQKYAQDNNLL 179
Query: 160 FFETSAKDNVNVKGVFERLVDIICDKM 186
F +TSAK N+K +F L + I +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKNI 206
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 221 bits (566), Expect = 2e-74
Identities = 56/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
++ + Y + GF L+Y +T + +F +QD QI + ++ +ILVGNKCD+ED
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 141 ERVISFERGKHLAES-LGVEFFETSAKDNVNVKGVFERLVDII 182
ERV+ E+G++LA F E+SAK +NV +F LV I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 222 bits (567), Expect = 2e-74
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 3/172 (1%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
A +KL+++G+ VGK++ ++ F + T+ D +K ++ L
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAIL 68
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVIL 131
+ DTAGQE + + Y R GF+++Y VT++ SF + + I ++ +IL
Sbjct: 69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
Query: 132 VGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDN-VNVKGVFERLVDII 182
V NK D+ R ++ ++GK +A + + ETSAKD +NV F LV +I
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 219 bits (560), Expect = 1e-73
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+K++++G+ VGK++ ++ +F + T+ DF K + L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
++ ++ Y + GFIL+Y + N++SF I+ QI + ++ VILVGNK D+E
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
ER +S G+ LAE G F ETSAK V +F +V +
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 220 bits (562), Expect = 2e-73
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP- 139
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLD 191
R + ++ LA+S G+ F ETSAK V+ F LV I + L+
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 219 bits (560), Expect = 2e-73
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+++ + G VGK+S + R+ +F +++ TV ++ + + LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQV--ILVGNKCDME 139
++ + FIL+Y +T+ +S ++ QI D + +LVGNKCD
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
R + + LA + F ETSAK N NVK +F+ L+++ +
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 216 bits (553), Expect = 3e-72
Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVFRHDKR---VKLQIWD 76
KL+I+GN+ GKT+ L + + +TVGID K + DKR + L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEES-FTSIQDWITQIKTYSWDNAQVILVGNK 135
AG+E + + + ++ +YD++ ++ +++ W+ IK + ++ VILVG
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTH 121
Query: 136 CDMEDER---VISFERGKHLAESLGVE-----FFETSAKDNVNVKGVFERLVDIICDK 185
D+ DE+ + K L G F + +++ + + + +++ +
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 216 bits (553), Expect = 5e-72
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 5/187 (2%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
+++++ G VGK+S + R+ +F ++ T+ ++ + + LQI DT
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTT 64
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK--TYSWDNAQVILVGNKC 136
G ++ + FIL++ VT+++S + I S ++ V+LVGNKC
Sbjct: 65 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV-DIICDKMSESLDSDPN 195
D E +R + + +A+ F ETSAK N NVK +F+ L+ MS ++D +
Sbjct: 125 D-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRS 183
Query: 196 LVAGPKG 202
Sbjct: 184 GKQKRTD 190
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 215 bits (550), Expect = 6e-72
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++++G+ VGK++ ++ D F + T ++ K V + V++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDME 139
E Y I Y+R GF+ ++ +T ESF + D+ QI +N +LVGNK D+E
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
D+R +S E K+ A+ V + ETSAK NV VF L+ I +
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 211 bits (541), Expect = 1e-70
Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F T+ ++ K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNK D+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
R + + + LA S G+ + ETSAK V+ F LV I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 212 bits (542), Expect = 1e-70
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 4/184 (2%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK ++ ++LVGNKCD+
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNLVAGP 200
R + ++ + LA S G+ F ETSAK V F LV I K E + D
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI-RKHKEKMSKDGKKKKKK 181
Query: 201 KGTR 204
T+
Sbjct: 182 SKTK 185
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 211 bits (538), Expect = 3e-70
Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
KL+++G ++VGK+S + R+ + F T+G F + V ++ VK +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD---M 138
R+ ++ YYR A +++YDVT +SF + W+ ++ + + + LVGNK D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
ER ++ E G+ LAE G+ FFETSAK NV VF + + I K
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 210 bits (537), Expect = 4e-70
Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
++K+L++G VGK++ + G + +++ + L ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDME 139
+ R + ++++Y VT++ SF + Q++ D+ +ILVGNK D+
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
R +S + G+ A +F ETSA + NV+ +FE +V I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 207 bits (530), Expect = 7e-69
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++++++G+ VGKTS +A +G D +T+ + L + DT E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 82 RYRTITT--AYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKCDM 138
+ + + +G ++++Y + + SF S + Q++ T+ D+ +ILVGNK D+
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
R +S E G+ A +F ETSA NV +FE +V + + +S
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 206 bits (525), Expect = 1e-67
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
Query: 13 AADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVF---RHDK 68
+ ++ + +++++IG VGK++ +A + + +G D +T+
Sbjct: 29 ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88
Query: 69 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNA 127
+ L +W+ G+ + + + ++++Y +T+ SF + Q+ + ++
Sbjct: 89 IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 146
Query: 128 QVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMS 187
+ILVGNK D+ R +S G+ A +F ETSA NVK +FE +V + +
Sbjct: 147 PIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 206
Query: 188 E 188
Sbjct: 207 S 207
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 202 bits (517), Expect = 1e-66
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 4/170 (2%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
KL I G + VGK++ + R+ F + T+ ++ D+ V ++I DTA
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTA 84
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCD 137
GQE + R GF+L+YD+T+ SF + + N +ILVGNK D
Sbjct: 85 GQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDN-VNVKGVFERLVDIICDKM 186
++ R +S E G+ LA L F+E SA N+ +F L + +
Sbjct: 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 194 bits (496), Expect = 1e-63
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 6/165 (3%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
L I+G GK++ ++ F S + + + + V L++ DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLD 80
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ---VILVGNKCDM 138
R Y A F+++Y V + +SF S ++ + ++ + + +L+GNK DM
Sbjct: 81 TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
Query: 139 EDERVISFERGKHLAESLGVEFFETSAKDNV-NVKGVFERLVDII 182
R ++ G LA G FFE SA + +V+ VF V
Sbjct: 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 191 bits (488), Expect = 3e-62
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 6/177 (3%)
Query: 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR 69
+N K++++G+ +VGKT L ++ +A+V TV +F + ++
Sbjct: 12 TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEE 70
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQ 128
L +WDTAGQE Y + Y + +L + V N SF +I W +IK Y D A+
Sbjct: 71 FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAK 129
Query: 129 VILVGNKCDMED--ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
+LVG K D+ ++ + G L + LG V + E S+ + + VFE+ VD I
Sbjct: 130 TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 191 bits (487), Expect = 4e-62
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ I+GN S GK++ + RY ++ S G FK K + + L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDM-- 138
+ + + ++ + +E SF ++ ++ ++ ++ + ++LVG + +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 139 EDERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
+ RVI R + L+ L ++ET A +NV+ VF+ + +
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 188 bits (480), Expect = 4e-61
Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 7/173 (4%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVF---RHDKRVKLQIWDT 77
+++++IG VGK++ +A + + +G D +T+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIK-TYSWDNAQVILVGNKC 136
G+ + + + ++++Y +T+ SF + Q++ ++ +ILVGNK
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
D+ R +S G+ A +F ETSA NVK +FE +V + +
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 193 bits (491), Expect = 5e-59
Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 12/186 (6%)
Query: 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRH--- 66
+ K+ +IG+ GKTS L + ++F T G++ K
Sbjct: 30 RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGL 89
Query: 67 -----DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT 121
K WD GQE + + ++L+ D + ++ W+ I+
Sbjct: 90 ENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEK 146
Query: 122 YSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181
Y + VI+V NK D I ++ ++ F S K+ V+ + + L
Sbjct: 147 YG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205
Query: 182 ICDKMS 187
+ S
Sbjct: 206 VLHPDS 211
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 177 bits (452), Expect = 5e-57
Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 13/174 (7%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G++ GK+S + R+ S+ T +K K + + + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK-KEMLVDGQTHLVLIREEAGAP 65
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW---DNAQVILVG--NKC 136
+ + A I ++ + +E SF ++ Q+ + + LVG ++
Sbjct: 66 DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 137 DMEDERVISFERGKHL-AESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
RV+ R + L A+ ++ET A +NV VF+ + + +
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 155 bits (393), Expect = 4e-48
Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 14/173 (8%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K + +G+ +VGKT L Y ++F + +V TV +F V V L +WDTAGQE
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN-GATVNLGLWDTAGQE 67
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + YRGA FIL + + ++ S+ ++ WI ++K Y+ ++LVG K D+ D
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRD 126
Query: 141 ----------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
I+ +G+ L + +G + E S+K NVKGVF+ + ++
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 154 bits (391), Expect = 2e-47
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K++++G+ GKTS L +AD +F ++ TV + + + K V L IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + +Y A +L +DVT+ SF +I + W ++ + +I+VG K D+
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRK 152
Query: 141 ------------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176
+++ RG+ +A S+G V + E SA+ + NV VF+
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 151 bits (383), Expect = 2e-46
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
KL+I+G+ + GKT L ++ D F +V TV + + + K+V+L +WDTA
Sbjct: 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCD 137
GQE Y + Y ++ + + + +S +I + W ++K + N +ILVGNK D
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 140
Query: 138 MED------------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176
+ + + E G+ +A + + E SAK V+ VFE
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 149 bits (377), Expect = 2e-45
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + Y F++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 141 ------------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176
I++ +G +A+ +G V++ E SA +K VF+
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 148 bits (375), Expect = 5e-45
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 17/191 (8%)
Query: 1 MAGVGETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV 60
+ E + + A Q KL+++G+ GKT+ L A D + +V TV ++
Sbjct: 7 HSSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-T 65
Query: 61 KTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQI 119
+ ++RV+L +WDT+G Y + Y + +L +D++ E+ S W T+I
Sbjct: 66 ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125
Query: 120 KTYSWDNAQVILVGNKCDMED------------ERVISFERGKHLAESLG-VEFFETSAK 166
Y + +V+L+G K D+ + IS+E+G +A+ LG + E SA
Sbjct: 126 LDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184
Query: 167 DN-VNVKGVFE 176
+ ++ +F
Sbjct: 185 TSEKSIHSIFR 195
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 147 bits (373), Expect = 7e-45
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+++G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + V + +S +I + W+ ++K + N +ILV NK D+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144
Query: 141 -----------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176
+ + + G+ +A + ++ E SAK V+ VFE
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 145 bits (369), Expect = 4e-44
Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K + +G+ +VGKT L Y + F + ++ TV D V + V L +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED 140
Y + YRGA F+L + + ++ S+ ++ W+ +++ ++ N ++LVG K D+ D
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 141 E--------RVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
+ VI+ +G+ L + +G + E S+K NVK VF+ + ++
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 143 bits (363), Expect = 3e-43
Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 17/173 (9%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
+ K++++G+S GKT+ L +A D F +V TV ++ +R++L +WDT+
Sbjct: 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEID-TQRIELSLWDTS 84
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCD 137
G Y + Y + ++ +D++ E+ S+ W +I+ + N +++LVG K D
Sbjct: 85 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 143
Query: 138 MED------------ERVISFERGKHLAESLG-VEFFETSAKDNVN-VKGVFE 176
+ + +S+++G ++A+ +G + E SA + N V+ +F
Sbjct: 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 196
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 140 bits (355), Expect = 3e-42
Identities = 42/169 (24%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++++G+S GKT+ L +A D F +V TV ++ +R++L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEID-TQRIELSLWDTSGSPY 67
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y + ++ +D++ E+ S+ W +I+ + N +++LVG K D+
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126
Query: 141 -----------ERVISFERGKHLAESLG-VEFFETSAKDNVN-VKGVFE 176
+ +S+++G ++A+ +G + E SA + N V+ +F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 139 bits (351), Expect = 1e-41
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
Y + Y ++ + + + SF +++ W +++ + N +ILVG K D+ D
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124
Query: 141 -----------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176
I++ +G +A+ +G V++ E SA +K VF+
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 172
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 138 bits (350), Expect = 2e-41
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K +++G+ +VGKTS + Y + + + ++ T D V + V+LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCDMED- 140
+ + Y F+L + V + SF ++ + W+ +I+ + A +ILVG + D+ +
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 141 -----------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176
E+ + E K LAE + + E SA N+K VF+
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD 187
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 133 bits (337), Expect = 1e-39
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 16/172 (9%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
M K +++G+ +VGKT L YA+D+F +V TV D +V K+ L ++DTA
Sbjct: 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 74
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQVILVGNKCD 137
GQE Y + Y F++ + V N SF ++++ W+ ++K Y+ N +L+G + D
Sbjct: 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQID 133
Query: 138 MED------------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFE 176
+ D E+ I E+G+ LA+ +G + E SA +K VF+
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 185
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 129 bits (326), Expect = 3e-37
Identities = 43/220 (19%), Positives = 67/220 (30%), Gaps = 66/220 (30%)
Query: 28 GNSSVGKTSFLFRY---ADDSFTSAFVSTVG-IDFKVKTVFRHD--------------KR 69
G +GK+ R+ + D F S + DF + V
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94
Query: 70 VKLQIW-------DTAGQERYRTITTAYYRGAM--------------------------- 95
K+ I D Q T Y + A
Sbjct: 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154
Query: 96 ----------GFILMYDVTNEE--SFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDER 142
GF+L DV+ +F +++ + +++V KCD ER
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214
Query: 143 VISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
I L++ ++ ETSA+ NVNV F LV +I
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 108 bits (270), Expect = 3e-28
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 16/181 (8%)
Query: 10 QKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR 69
+ D+ + K +++G+ +VGKT L Y ++F ++ TV D V K
Sbjct: 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP 202
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQD-WITQIKTYSWDNAQ 128
V L +WDTAG E Y + Y F++ + + + SF ++ W +++ + N
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTP 261
Query: 129 VILVGNKCDMED------------ERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVF 175
+ILVG K D+ D I++ +G +A+ +G V++ E SA +K VF
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
Query: 176 E 176
+
Sbjct: 322 D 322
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 87.1 bits (216), Expect = 1e-21
Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 25/187 (13%)
Query: 22 FKLLIIGNSSVGKTSFL----------FRYADDSFTSAFVSTVGIDFKVKTVFRHD-KRV 70
FK++ G GKT+ L + S + T+ DF + +
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNE---ESFTSIQDWITQIKTYSWDNA 127
+ ++ GQ Y RG G + + D + S+++ + Y
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134
Query: 128 QVILV--GNKCDMEDERVISFERGKHLAESLG----VEFFETSAKDNVNVKGVFERLVDI 181
V +V NK D+ D + E + + E A + V + + +
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEM---VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189
Query: 182 ICDKMSE 188
+ +++
Sbjct: 190 VLARVAG 196
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 71.5 bits (175), Expect = 1e-15
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 23/165 (13%)
Query: 23 KLLIIGNSSVGKTS---FLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
++L++G GK+S +F + T ST I K + V QIWD G
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY---KDDISNSSFVNFQIWDFPG 78
Query: 80 QERYRTIT---TAYYRGAMGFILMYDVTNE--ESFTSIQDWITQIKTYSWDNAQVILVGN 134
Q + T +RG I + D ++ E+ T + +++ + + + +
Sbjct: 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIH 137
Query: 135 KCDM--EDERVISFER---------GKHLAESLGVEFFETSAKDN 168
K D +D ++ + E L + F+ TS D+
Sbjct: 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH 182
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 72.7 bits (178), Expect = 2e-15
Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 25/186 (13%)
Query: 23 KLLIIGNSSVGKTS---FLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
KLL++G S GK+S +F T +T+ ++ R + L +WD G
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH---LRFLGNMTLNLWDCGG 61
Query: 80 QERY-----RTITTAYYRGAMGFILMYDVTNEESFTSIQDW---ITQIKTYSWDNAQVIL 131
Q+ + ++ I ++DV + E I+ + + Q++ YS +A++ +
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFV 120
Query: 132 VGNKCDM--EDERVISFERGKHLAESL-------GVEFFETSAKDNVNVKGVFERLVDII 182
+ +K D+ D+R F+ + F TS D ++ + ++V +
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL 179
Query: 183 CDKMSE 188
MS
Sbjct: 180 IPNMSN 185
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 62.6 bits (153), Expect = 2e-12
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G GKT+F+ A F + TVG F ++ + + V +++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITK--GNVTIKLWDIGGQP 78
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
R+R++ Y RG + M D ++E + ++ + + V+++GNK D+
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 141 ERVISFERGKHLAESLGVE--------FFETSAKDNVNVKGVFERLVDII 182
+ + L E + + + S K+ N+ + L+
Sbjct: 139 --ALDEKE---LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 61.9 bits (151), Expect = 3e-12
Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+LL++G + GKT+ L ++ + + T+G F +KT+ + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTL--EHRGFKLNIWDVGGQK 73
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
R+ Y+ G I + D + + Q + + A +++ NK D+
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 141 ERVISFERGKHLAESLGVE--------FFETSAKDNVNVKGVFERLVDIICDKM 186
+ + E+L ++ SA ++ + L+D I ++
Sbjct: 134 ALSCN-----AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 61.9 bits (151), Expect = 3e-12
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++LI+G GKT+ L+R + T+G F V+T+ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETL--SYKNLKLNVWDLGGQT 73
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
R YY I + D T+++ ++ + + + +A +++ NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133
Query: 141 ---ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
+S E + +SA + + L+D+I ++
Sbjct: 134 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 61.0 bits (149), Expect = 4e-12
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 19/173 (10%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++LI+G GKT+ L+R + + T+G F V+TV K +K Q+WD G
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETV--TYKNLKFQVWDLGGLT 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
R YY I + D + + + + + + A +++ NK DME
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122
Query: 141 ERVISFERGKHLAESLG--------VEFFETSAKDNVNVKGVFERLVDIICDK 185
++ +A SLG + F+TSA + E LV+ + +
Sbjct: 123 --AMTSSE---MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 61.5 bits (150), Expect = 5e-12
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKTS L+R + V TVG ++T+ K + ++WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETL--QYKNISFEVWDLGGQT 77
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
R Y+ I + D T+ + + + + ++L+ NK D+ D
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137
Query: 141 ERVISFERGKHLAESLG--------VEFFETSAKDNVNVKGVFERLVDII 182
S +AE LG ++S+K + + LV+ +
Sbjct: 138 --AASEAE---IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 61.1 bits (149), Expect = 7e-12
Identities = 30/178 (16%), Positives = 70/178 (39%), Gaps = 21/178 (11%)
Query: 22 FKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+L +G + GKT+ + + ++ + + T+G F ++ + ++D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKF--KSSSLSFTVFDMSGQ 77
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILV-GNKCD 137
RYR + YY+ I + D ++ ++ + + + IL NK D
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137
Query: 138 MEDERVISFERGKHLAESLGVE--------FFETSAKDNVNVKGVFERLVDIICDKMS 187
+ D ++ + +++ L +E + A ++ + L D I +
Sbjct: 138 LRD--AVTSVK---VSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVKT 190
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 61.2 bits (149), Expect = 7e-12
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 24/182 (13%)
Query: 18 FDYMF-----KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
F +F ++L++G + GKT+ L++ + + T+G F V+TV K +
Sbjct: 21 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNICF 75
Query: 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
+WD GQ++ R + Y++ G I + D + E D + ++ V+LV
Sbjct: 76 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLV 135
Query: 133 -GNKCDMEDERVISFERGKHLAESLGVE--------FFETSAKDNVNVKGVFERLVDIIC 183
NK DM + +S L + LG++ T A + + L +
Sbjct: 136 FANKQDMPNAMPVS-----ELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190
Query: 184 DK 185
+
Sbjct: 191 KR 192
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 59.9 bits (146), Expect = 1e-11
Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 19/170 (11%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L + A + + T G F +K+V + KL +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSV--QSQGFKLNVWDIGGQR 71
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
+ R +Y+ I + D + + F +T++ + +L+ NK D+
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131
Query: 141 ERVISFERGKHLAESLGVE--------FFETSAKDNVNVKGVFERLVDII 182
+AE L + SA V+ + +
Sbjct: 132 --AAPASE---IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 60.0 bits (146), Expect = 1e-11
Identities = 29/177 (16%), Positives = 72/177 (40%), Gaps = 19/177 (10%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K++I+G + GKT+ L++++ + T+G V+ + + +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEI--VINNTRFLMWDIGGQE 71
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
R+ YY I++ D T+ E + ++ + ++ A +++ NK D+++
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131
Query: 141 ERVISFERGKHLAESLGVE--------FFETSAKDNVNVKGVFERLVDIICDKMSES 189
++ +++ L + A + E ++ + ++
Sbjct: 132 CMTVA-----EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHH 183
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 58.7 bits (143), Expect = 3e-11
Identities = 32/172 (18%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
++L++G + GKT+ L++ + + T+G F V+TV K + +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQDK 56
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMEDE 141
R + Y++ G I + D + E ++ + ++ +A +++ NK D+ +
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 142 RVISFERGKHLAESLGVE--------FFETSAKDNVNVKGVFERLVDIICDK 185
+ + + LG+ T A + + L + + ++
Sbjct: 117 MNAA-----EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 58.0 bits (141), Expect = 8e-11
Identities = 29/170 (17%), Positives = 70/170 (41%), Gaps = 19/170 (11%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K++I+G + GKT+ L++++ + T+G V+ + + +WD GQE
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEI--VINNTRFLMWDIGGQE 76
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
R+ YY I++ D T+ E + ++ + ++ A +++ NK D+++
Sbjct: 77 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136
Query: 141 ERVISFERGKHLAESLGVE--------FFETSAKDNVNVKGVFERLVDII 182
++ +++ L + A + E ++ +
Sbjct: 137 CMTVA-----EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 53.8 bits (130), Expect = 3e-09
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 6/119 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+ +G + GKT+ L DD V T+ + + + +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTI--AGMTFTTFDLGGHIQ 81
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
R + Y G + + D + E ++ + + T IL+ GNK D +
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 54.0 bits (130), Expect = 3e-09
Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FRHDKRVKLQIWDTAGQE 81
+L +G GKT R + +++ +++ L + D G E
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65
Query: 82 RYR-TITTAYYRGAMGFILMYDVTN-EESFTSIQDWITQI--KTYSWDNAQVILV-GNKC 136
R + + A + + D + + +++ Q+ + + N+ +L+ NK
Sbjct: 66 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125
Query: 137 DMED 140
D+
Sbjct: 126 DIAM 129
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 54.3 bits (130), Expect = 5e-09
Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 24 LLIIGNSSVGKTS---FLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+L++G GK+S +F T ST + + + L + + GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPGQ 56
Query: 81 ERYR---TITTAYYRGAMGFILMYDVTN--EESFTSIQDWITQIKTYSWDNAQVILVGNK 135
Y + ++ + + D + + T++ I + + + ++ +K
Sbjct: 57 LNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHK 115
Query: 136 CD-------MEDERVISFERGKHLA----ESLGVEFFETSAKDN 168
D ++ +R I G+ L + + V F+ TS D+
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH 159
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 51.8 bits (125), Expect = 1e-08
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 6/119 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KLL +G + GKT+ L +D + T + + +K +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEEL--AIGNIKFTTFDLGGHIQ 79
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
R + Y+ G + + D + E F + + + + ++ GNK D +
Sbjct: 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 50.2 bits (120), Expect = 1e-07
Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 24/174 (13%)
Query: 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVF---RHDKRVKLQIWDTAG- 79
++I G+ +VGK++ L T+A F + + D + QI DT G
Sbjct: 170 VVIAGHPNVGKSTLLKA-----LTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
Query: 80 -----QER----YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS--WDNAQ 128
ER + I Y G + I ++D + E +++ I + + +
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNL-IIYIFDPS-EHCGFPLEEQIHLFEEVHGEFKDLP 282
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
++V NK D+ DE I +R + + G+ + SA + V E ++ +
Sbjct: 283 FLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTL 334
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 48.2 bits (115), Expect = 2e-07
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 15/127 (11%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
++I G + GKTS L DS TV + + + D G +
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADY--DGSGVTLVDFPGHVK 103
Query: 83 YRTITTAYYRGAM----GFILMYD-VTNEESFTSI----QDWITQIKTYSWDNAQVILVG 133
R + Y + G I M D + + T+ D ++ ++ + +++
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163
Query: 134 NKCDMED 140
NK ++
Sbjct: 164 NKSELFT 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 48.2 bits (115), Expect = 4e-07
Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 15/126 (11%)
Query: 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83
++I G + GKTS L DS TV + + + D G +
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADY--DGSGVTLVDFPGHVKL 68
Query: 84 RTITTAYY----RGAMGFILMYD-VTNEESFTSI----QDWITQIKTYSWDNAQVILVGN 134
R + Y + G I M D + + T+ D ++ ++ + +++ N
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128
Query: 135 KCDMED 140
K ++
Sbjct: 129 KSELFT 134
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 48.7 bits (116), Expect = 5e-07
Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 19/180 (10%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ + + TVG F V+TV K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETV--TYKNVKFNVWDVGGQD 377
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV-GNKCDMED 140
+ R + YY G G I + D + + + + +I +IL+ NK D+ D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 141 ERVISFERGKHLAESLG--------VEFFETSAKDNVNVKGVFERLVDIICDKMSESLDS 192
+ E LG + A + L K++ +L+
Sbjct: 438 AMKPH-----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAALEH 492
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 46.3 bits (110), Expect = 2e-06
Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 37/209 (17%)
Query: 24 LLIIGNSSVGKTSFLFRY-------ADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
+++ G +VGK+SF+ SFT T + V + QI D
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFT-----TKNL--YVGHFDHKLNKY--QIID 82
Query: 77 TAG-----------QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD 125
T G E A+ G + FI+ D++ E+ +I++ I +
Sbjct: 83 TPGLLDRAFENRNTIEMTTITALAHINGVILFII--DIS-EQCGLTIKEQINLFYSIKSV 139
Query: 126 --NAQVILVGNKCDMEDERVISFERGKHLAESL-----GVEFFETSAKDNVNVKGVFERL 178
N +++ NK D + +S + + + L ++F S V V+
Sbjct: 140 FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199
Query: 179 VDIICDKMSESLDSDPNLVAGPKGTRLTE 207
+++ + +ES+ D + K
Sbjct: 200 CELLKNDQAESILLDQEQLLNTKLGETKN 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 1e-05
Identities = 26/161 (16%), Positives = 45/161 (27%), Gaps = 64/161 (39%)
Query: 55 GIDF-KVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQ 113
G+D K + +W+ A +++ GF SI
Sbjct: 1632 GMDLYKTSKAAQ-------DVWNRADN---------HFKDTYGF-------------SIL 1662
Query: 114 DWITQIKTYSWDNAQVILVGNKCDMEDERVISF--ERGKHLAESLGVEFFETSAKDNVNV 171
D + +N I F E+GK + E+ FET +
Sbjct: 1663 DIVI-------NNPV------------NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 172 KGVFERLVDIICDKMSESLDSDPNLVAGPKGT-RLTE--QP 209
+ +F+ + + KG T+ QP
Sbjct: 1704 EKIFKEINEHSTSYTFR----------SEKGLLSATQFTQP 1734
Score = 42.3 bits (99), Expect = 7e-05
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 39/167 (23%)
Query: 30 SSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTA 89
S VG+ + F + ++ G D H KL + + + +
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLE--GNDI-------HALAAKLLQENDTTLVKTKELIKN 125
Query: 90 YYRGAMGFILMYDVTNEES--FTSIQDWITQIKTYSWDNAQVILV----GNKCDMEDE-R 142
Y A S F ++ + NAQ++ + GN D +E R
Sbjct: 126 YIT-ARIMAKRPFDKKSNSALFRAVGE----------GNAQLVAIFGGQGNTDDYFEELR 174
Query: 143 VISFERGKHLAESLGVEFFETSA-------KDNVNVKGVFERLVDII 182
+ ++ L + + SA + ++ + VF + ++I+
Sbjct: 175 DL-YQTYHVLVG----DLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Score = 28.9 bits (64), Expect = 1.5
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 22/86 (25%)
Query: 138 MED--ERVISFERGKHLAESLGVEFFETSAKDNVNVKG----VFERLVDIICDK---MSE 188
+D + +SF A+ + + ++T D +++ + ER+VD I
Sbjct: 440 NKDLVKNNVSFN-----AKDIQIPVYDT--FDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 189 SLDSDPN--LVAGPKGT----RLTEQ 208
+ L GP G LT +
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHR 518
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 43.3 bits (102), Expect = 2e-05
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
++L++G + GKT+ L++ + + T+G F V+TV K + +W
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVW 214
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEE 107
D GQ++ R + Y++ G I + D + E
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 246
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 41.2 bits (96), Expect = 1e-04
Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 19/177 (10%)
Query: 11 KDAADQNFDYMFKLLIIGNSSVGKTSF---LFRYADDSFTSAFVSTVGIDFKVKTVFRHD 67
DA + + + + G + GK+SF L ++ +A V + + ++H
Sbjct: 59 SDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHP 117
Query: 68 KRVKLQIWDTAGQERYRTITTAYYRGAMG-----FILMYDVTNEESFTSIQDWITQIKTY 122
+ WD G Y FI++ +++ I I+ +K
Sbjct: 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK- 176
Query: 123 SWDNAQVILVGNKCDM----EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVF 175
+ V K D E + + + + + + T ++ + +F
Sbjct: 177 -----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF 228
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 36.4 bits (85), Expect = 0.003
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG 157
+ M D T ++ + + + +V NK D+ E + ++E G
Sbjct: 88 LFMVDGTTTDA-VDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-------MSEVNG 139
Query: 158 VEFFETSAKDNVNVKGVFERLVDIICDKM 186
SA+ V + L + + M
Sbjct: 140 HALIRLSARTGEGV----DVLRNHLKQSM 164
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 36.4 bits (85), Expect = 0.004
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG 157
+ + D+ E I ++K A+ + V NK D +A+ G
Sbjct: 317 LYLLDLGTERL-DDELTEIRELKAAH-PAAKFLTVANKLDRAANADALIR---AIADGTG 371
Query: 158 VEFFETSAKDNVNVKGVFERLVDII 182
E SA + + + + + D++
Sbjct: 372 TEVIGISALNGDGIDTLKQHMGDLV 396
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 36.5 bits (85), Expect = 0.005
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 126 NAQVILVGNKCD-MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180
+ ++V NK D ++DE + + ++G S+ +K + E L
Sbjct: 160 QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTG 215
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 35.8 bits (83), Expect = 0.007
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 113 QDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVK 172
D + K ++V NK D+ E+ + + SA
Sbjct: 130 DDVVNLFKEM---EIPFVVVVNKIDVLGEKAEELK--GLYESRYEAKVLLVSALQKKGFD 184
Query: 173 GVFERLVDII 182
+ + + +I+
Sbjct: 185 DIGKTISEIL 194
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 35.5 bits (81), Expect = 0.011
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 9 WQKDAADQNFDYMFKLLIIGNSSVGKTSF---LFRYADDSFTSA-FVSTVGIDFKVKTVF 64
+ Q F F +L +G + +GK++ LF + + V + +
Sbjct: 32 LVNKSVSQGFC--FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQ 89
Query: 65 RHDKRVKLQIWDTAG 79
+ R+KL I T G
Sbjct: 90 ESNVRLKLTIVSTVG 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 34.4 bits (78), Expect = 0.018
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 22 FKLLIIGNSSVGKTSF---LFRY------ADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
F L+++G S +GK++ LF TV I+ + +++L
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78
Query: 73 QIWDTAGQER 82
+ DT G
Sbjct: 79 TVVDTPGYGD 88
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 34.4 bits (80), Expect = 0.019
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 130 ILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
++ NK D+ +E + + G+ SA + + E L ++
Sbjct: 273 LVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPALKEALHALV 323
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 33.7 bits (78), Expect = 0.035
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 126 NAQVILVGNKCDM--EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
+ Q I+ K D+ + + + + ++G + + TS+KD ++ ++
Sbjct: 117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSL----ADIIPHFQ 172
Query: 184 DKMSESLDSDPNLVAGPKG 202
DK + + AG G
Sbjct: 173 DKTT--------VFAGQSG 183
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 33.3 bits (77), Expect = 0.047
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 126 NAQVILVGNKCD-MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180
+ ++V NK D + +E ER + G + + SAK + + + L
Sbjct: 110 KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 32.8 bits (74), Expect = 0.057
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 27/105 (25%)
Query: 22 FKLLIIGNSSVGKTSF---LFRY-----ADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
F L+++G S +GK++ LF + TV ++ + ++ L
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ 118
I DT G V N + + D+I
Sbjct: 69 IVDTPGFG-------------------DAVDNSNCWQPVIDYIDS 94
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 32.9 bits (76), Expect = 0.059
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 130 ILVGNKCDMEDERVISFERGKHLAESL--GVEFFETSAKDNVNVKGVFERLVDII 182
I+V NK DM + E + E L F SA ++ + + + +
Sbjct: 278 IIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 328
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.9 bits (76), Expect = 0.078
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG 157
+ + D ++ + + +IK N + ++V NK D+ ++ + K
Sbjct: 328 LFVLDASSPLD-EEDRKILERIK-----NKRYLVVINKVDVVEKINEEEIKNK---LGTD 378
Query: 158 VEFFETSAKDNVNVKGVFERLVDII 182
+ SA ++ + E +
Sbjct: 379 RHMVKISALKGEGLEKLEESIYRET 403
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 32.6 bits (74), Expect = 0.079
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 126 NAQVILVGNKCDMEDERVISF---ERGKHLAESLGV---EFFETSAKDNVNVKGVFERL 178
N +V+LVGNK D+ + V ++ A+ LG+ + F SA + + + +
Sbjct: 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 32.2 bits (73), Expect = 0.11
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 126 NAQVILVGNKCDMEDERVISFERG---KHLAESLGVEFFE---TSAKDNVNVKGVFERL 178
+ ++LVGNK D+ V + + +AE LG+ + SA + + V E +
Sbjct: 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAI 156
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 31.7 bits (73), Expect = 0.14
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLG--VEFFETSAKDNVNVKGVFERLVDIICDKM 186
VI+V NK D + + E SA N+ + LV I +
Sbjct: 125 VIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANL----DELVKTILKYL 180
Query: 187 SESLDSDPNLVAGPKGTRLTEQPQR 211
E L P+ +T+ P R
Sbjct: 181 PEG----EPLF--PEDM-ITDLPLR 198
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 31.7 bits (73), Expect = 0.18
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLG 157
+L D + T Q+ Q+K + +ILV NK D+ ++++I+
Sbjct: 308 LLTIDAATGWT-TGDQEIYEQVK-----HRPLILVMNKIDLVEKQLITSLE----YPENI 357
Query: 158 VEFFETSAKDNVNVKGVFERLVDIICDKMSESLDS 192
+ T+A + + +++I+ ++ D
Sbjct: 358 TQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADM 392
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 30.9 bits (69), Expect = 0.35
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFL 38
D +FD +L+ G S GKTSF+
Sbjct: 59 DADFDGKPMVLVAGQYSTGKTSFI 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.41
Identities = 34/231 (14%), Positives = 67/231 (29%), Gaps = 61/231 (26%)
Query: 1 MAGVGETKW------QKDAADQNFDYMFKL--LIIGNSSVGKTSF-----LFRYADDSFT 47
+ G G+T W D FK+ L + N + +T L D ++T
Sbjct: 158 VLGSGKT-WVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 48 SAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEE 107
S D H +KL+I + R R + + Y + +++ +V
Sbjct: 215 S------RSD--------HSSNIKLRIHSIQAELR-RLLKSKPYENCL--LVLLNV---- 253
Query: 108 SFTSIQDWITQIKTYSWDNAQVILVGNKCDM----EDERVISFERGKHLAESLGVEFFET 163
+ C + ++V F T
Sbjct: 254 ----------------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 164 SAKDNVNVKGVFERLVDIICDKM-SESLDSDPNLVAGPKGTRLTEQPQRNN 213
D VK + + +D + E L ++P ++ + + +
Sbjct: 298 LTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWD 345
Score = 29.1 bits (64), Expect = 1.6
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 31/100 (31%)
Query: 137 DMEDE--RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK--------M 186
D++D ++S E H+ S KD V+ G RL + K +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMS----------KDAVS--GTL-RLFWTLLSKQEEMVQKFV 83
Query: 187 SESLDSDPNLVA--------GPKGTRLTEQPQRNNPINPN 218
E L + + P QR+ N N
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.47
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 31 SVGK-TSFLFRYADDSFTS-AFVSTV 54
++ K + L YADDS + A +T+
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 0.63
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 106 EESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
+++ +Q +K Y+ D+A + + K ME
Sbjct: 19 KQALKKLQ---ASLKLYADDSAPALAI--KATME 47
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 29.6 bits (67), Expect = 0.59
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
+ILV NK D+ ++ + K + + LGV T+AK V+ + + + K++
Sbjct: 112 IILVLNKFDLLKKKGAKIDI-KKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKVTT 170
Query: 189 S 189
+
Sbjct: 171 N 171
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.8 bits (66), Expect = 0.65
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 22 FKLLIIGNSSVGKTSFL--------FRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
F L+++G S +GK++ + + + TV ++ + ++ L
Sbjct: 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 91
Query: 74 IWDTAG 79
I DT G
Sbjct: 92 IVDTPG 97
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 29.7 bits (68), Expect = 0.72
Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 18/117 (15%)
Query: 98 ILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM--EDERVISFERGKHLAES 155
+++ V T + + + ++LVGNK D E + K E
Sbjct: 89 AVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAM-----KAYHEL 143
Query: 156 LG-VEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNLVAGPKGTRLTEQPQR 211
L E SA D V L + M E P P+ ++Q
Sbjct: 144 LPEAEPRMLSALDERQV----AELKADLLALMPEG----PFFY--PEDYAKSDQTFG 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 29.4 bits (67), Expect = 0.83
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 126 NAQVILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
+ ++V NK D+ DE + R S +TSAK + + E L + + K
Sbjct: 115 ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGI----EELKEYLKGK 170
Query: 186 MSESLDSDPNLVAGPKG 202
+S +AG G
Sbjct: 171 IS--------TMAGLSG 179
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops,
DNA binding protein; 1.85A {Thermus aquaticus} PDB:
2ihe_A 2cwa_A 2ihf_A
Length = 264
Score = 29.3 bits (66), Expect = 0.89
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
W+ G+++ A + + E + QVIL+GN
Sbjct: 87 WEKDGEKKSEVQVRA---EFIDPL-------EGRGRETLEDARGQPRLRRALNQVILMGN 136
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
VIL D + + +R L + LG+ TS+ ++ + E++V+
Sbjct: 113 VILAMTAIDEAKKTGMKIDR-YELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 28.7 bits (65), Expect = 1.2
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
++L NK D+ I + K L + LGV+ SA + ++ + + + + DK +
Sbjct: 115 LLLALNKMDLAKSLGIEIDVDK-LEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTA 173
Query: 189 SLD 191
+
Sbjct: 174 EIK 176
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 28.8 bits (65), Expect = 1.3
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
V + N D+ D + K L+ LGV TSA V V ++
Sbjct: 110 VTIALNMIDVLDGQGKKINVDK-LSYHLGVPVVATSALKQTGVDQVVKKAAHTTTST 165
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 28.6 bits (65), Expect = 1.4
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDIICDKMS 187
VIL NK D E+ + LA + ++ SA+ +NV + + I+ +
Sbjct: 119 VILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV----DTIAAIVRKHLP 174
Query: 188 ES 189
E+
Sbjct: 175 EA 176
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 28.4 bits (64), Expect = 1.5
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
I+ N D+ +++ I E L+ LG + ++ + + ++ E
Sbjct: 115 CIVALNMLDIAEKQNIRIEIDA-LSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVE 173
Query: 189 SLDSDPNL 196
+ L
Sbjct: 174 LVHYAQPL 181
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 130 ILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
I++ NK D D V + +H E+ G+ ++ + + ++V + + E
Sbjct: 54 IMLLNKADKADAAVTQ-QWKEHF-ENQGIRSLSINSVNGQGLN----QIVPASKEILQEK 107
Query: 190 LDSDPNLVAGPKGTRL 205
D P+ R
Sbjct: 108 FDRMRAKGVKPRAIRA 123
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 28.2 bits (64), Expect = 2.1
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAE--SLGV-EFFETSAKDNVNVKGVFERLVDIICDK 185
V+L NK D + E ++ + SLG E + S + + + + + + +
Sbjct: 114 VVLAVNKLD-------NTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI 166
Query: 186 MSESLDSDPNLVA 198
+ +
Sbjct: 167 PETKYNEEVIQFC 179
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 27.8 bits (61), Expect = 2.2
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
+ + G VGKT+ + + + + S+ V G F + V + +R+ + +G
Sbjct: 3 HVFLTGPPGVGKTTLIHKAS-EVLKSSGVPVDG--FYTEEVRQGGRRIGFDVVTLSGTRG 59
Query: 83 --YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILV 132
R + Y V + S +V ++
Sbjct: 60 PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVI 111
>1no7_A Major capsid protein; novel fold, alpha plus beta, viral capsid
protein, folding nucleus, viral protein; 2.90A {Human
herpesvirus 1} SCOP: e.48.1.1
Length = 604
Score = 28.1 bits (62), Expect = 2.4
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 105 NEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
+E F ++ + Q T W+N + N +
Sbjct: 187 SEHVFCALARLVVQCITSYWNNTRCAAFVNDYSL 220
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 27.6 bits (62), Expect = 2.6
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDI 181
V++ N D+ + R IS + K L LG A N+ + + + L+
Sbjct: 113 VVVALNMMDIAEHRGISIDTEK-LESLLGCSVIPIQAHKNIGIPALQQSLLHC 164
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 27.1 bits (61), Expect = 3.3
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 129 VILVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
++L NK D+ I + K L + LGV+ SA + ++ + + + +
Sbjct: 111 LLLALNKMDLAKSLGIEIDVDK-LEKILGVKVVPLSAAKKMGIEELKKAISIAV 163
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.5 bits (60), Expect = 3.8
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 22 FKLLIIGNSSVGKTSF---LFRY------ADDSFTSAFVSTVGIDFKVKTVFRHDKRVKL 72
F L+++G S +GK++ LF TV I+ + +++L
Sbjct: 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRL 97
Query: 73 QIWDTAGQE 81
+ DT G
Sbjct: 98 TVVDTPGYG 106
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 27.3 bits (60), Expect = 4.1
Identities = 36/172 (20%), Positives = 55/172 (31%), Gaps = 43/172 (25%)
Query: 49 AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI---------- 98
V T GI ++ F + V ++ D GQ R + +
Sbjct: 150 VRVPTTGI---IEYPFDL-QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQ 205
Query: 99 -LMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDERVISFERGKHLAESL 156
L+ S + I TY W N+ VIL NK D+ +E+++ + E
Sbjct: 206 VLVESDNENRMEESKALF-RTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 264
Query: 157 G--------VEFFE------------------TSAKDNVNVKGVFERLVDII 182
G EF T A D N++ VF + D I
Sbjct: 265 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 27.4 bits (60), Expect = 4.5
Identities = 33/176 (18%), Positives = 52/176 (29%), Gaps = 50/176 (28%)
Query: 49 AFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN--- 105
A T GI + F K V ++ D GQ R + + + +
Sbjct: 184 ARRPTKGI---HEYDF-EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQ 239
Query: 106 -----------EESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMEDERVISFERGKHLA 153
ES + + N +IL NK D+ +E+V +
Sbjct: 240 VLMEDRQTNRLTESLNIFETIVN----NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFL 295
Query: 154 ESLG------------VEFFE---------------TSAKDNVNVKGVFERLVDII 182
E G VE F T+A + N++ VF + D I
Sbjct: 296 EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351
>4e1t_A Invasin; outer membrane beta barrel, adhesin, integrin, cell
adhesion; HET: OLC OLB; 2.26A {Yersinia
pseudotuberculosis}
Length = 245
Score = 27.1 bits (59), Expect = 4.6
Identities = 12/115 (10%), Positives = 28/115 (24%)
Query: 101 YDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKHLAESLGVEF 160
D+ ++ ++ + +V L G + ++ L V
Sbjct: 126 GDLRANAYLPALPQLGGKLMYEQYTGERVALFGKDNLQRNPYAVTAGINYTPVPLLTVGV 185
Query: 161 FETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNLVAGPKGTRLTEQPQRNNPI 215
+ K + + ++ + L RNN I
Sbjct: 186 DQRMGKSSKHETQWNLQMNYRFGESFQSQLSPSAVAGTRLLAESRYNLVDRNNNI 240
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II
acid synthesis pathway; 2.51A {Staphylococcus aureus}
Length = 101
Score = 25.9 bits (57), Expect = 5.5
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 151 HLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMS 187
H S GV+ + N F+++ DII D++
Sbjct: 4 HHHHSSGVDLGTENLYFQSNAMENFDKVKDIIVDRLG 40
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 26.7 bits (59), Expect = 5.8
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 20/140 (14%)
Query: 23 KLLIIGNSSVGKTS---FLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
+L++G VGK+S L + + G+ V + I DT G
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIG--EQVVRVSPFQAEGLRP-VMVSRTMGGF-TINIIDTPG 93
Query: 80 --------QERYRTITTAYYRGAMGFILMYDVTNEESFT----SIQDWITQIKTYSWDNA 127
+ I + +L D + + + ITQ
Sbjct: 94 LVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCK 153
Query: 128 QVILVGNKCDMEDERVISFE 147
+LV +S+E
Sbjct: 154 -TLLVLTHAQFSPPDELSYE 172
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 26.5 bits (58), Expect = 6.3
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 23 KLLIIGNSSVGKTSF----LFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
+++++G + GK++ L R S T+A T + + + K +L + DT
Sbjct: 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW----KETELVVVDTP 86
Query: 79 G 79
G
Sbjct: 87 G 87
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 26.0 bits (58), Expect = 8.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 149 GKHLAESLGVEFFET 163
G+ LA++LGV +T
Sbjct: 19 GRRLAKALGVGLLDT 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,296,677
Number of extensions: 183576
Number of successful extensions: 940
Number of sequences better than 10.0: 1
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 172
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)