RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2300
(221 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 172 bits (437), Expect = 2e-55
Identities = 95/173 (54%), Positives = 135/173 (78%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+ +DY+FKLL+IG+S VGKT LFR+++D+F S F+ST+GIDFK++T+ KR+KLQIW
Sbjct: 1 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
DTAGQER+RTITTAYYRGAMG +L+YD+TNE+SF +I++WI I+ ++ + + +++GNK
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
CD+ D+R +S ERG+ LA G++F ETSAK N+NV+ F L I KM +
Sbjct: 121 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 161 bits (408), Expect = 3e-51
Identities = 144/169 (85%), Positives = 159/169 (94%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
NFDYMFK+LIIGNSSVGKTSFLFRYADDSFT AFVSTVGIDFKVKT++R+DKR+KLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQERYRTITTAYYRGAMGFILMYD+TNEESF ++QDW TQIKTYSWDNAQV+LVGNKC
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
DMEDERV+S ERG+ LA+ LG EFFE SAKDN+NVK FERLVD+IC+K
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 161 bits (408), Expect = 4e-51
Identities = 87/166 (52%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K+L+IG+S VGK+ L R+ +D F +F++T+GIDFK+KTV + K+VKLQIWDTAGQ
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140
ER+RTITTAYYRGAMG IL+YD+T+E +FT+I+ W + ++ D AQ++LVGNK DM +
Sbjct: 62 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 120
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
RV++ ++G+ LA+ LG+ F E+SAK++ NV +F L +I +K+
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 158 bits (399), Expect = 2e-49
Identities = 87/186 (46%), Positives = 131/186 (70%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FKLL+IGNS VGK+ L R++DD++T+ ++ST+G+DFK+KTV K VKLQIWDT
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+RTIT++YYRG+ G I++YDVT++ESF ++ W+ +I Y+ +LVGNKCD
Sbjct: 63 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSDPNLV 197
++D+RV+ ++ K A++ + F ETSA D+ NV+ F + I + MS+ ++
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 182
Query: 198 AGPKGT 203
KG
Sbjct: 183 KEDKGN 188
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 154 bits (390), Expect = 2e-48
Identities = 70/170 (41%), Positives = 114/170 (67%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
++D++FK+++IGN+ VGKT + R+ F +T+G+DF +KTV + ++VKLQIWD
Sbjct: 1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQER+R+IT +YYR A IL YD+T EESF + +W+ +I+ Y+ + +LVGNK
Sbjct: 61 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
D+ + R +S +R + +E+ + + ETSAK++ NV+ +F L + +
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 170
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 150 bits (380), Expect = 6e-47
Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRHDKRVKLQIWD 76
+D FK++++G+S VGKT L R+ D +F + F+STVGIDF+ K + +VKLQ+WD
Sbjct: 3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62
Query: 77 TAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
TAGQER+R++T AYYR A +L+YDVTN+ SF +IQ W+T+I Y+ + ++L+GNK
Sbjct: 63 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 122
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
D ERV+ E G+ LA+ G+ F ETSAK +NV F + +
Sbjct: 123 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 147 bits (372), Expect = 8e-46
Identities = 62/165 (37%), Positives = 101/165 (61%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+ Y+FK +IIG+ VGK+ L ++ + F + T+G++F + + +++KLQIWDT
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+R +T +YYRGA G +++YD+T ++ + W+T + + N +IL+GNK D
Sbjct: 61 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+E +R +++E K AE G+ F E SAK NV+ F I
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 148 bits (374), Expect = 9e-46
Identities = 77/186 (41%), Positives = 130/186 (69%), Gaps = 11/186 (5%)
Query: 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK-------- 68
++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGIDF+ K V + +
Sbjct: 1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60
Query: 69 --RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDN 126
+V LQ+WDTAGQER+R++TTA++R AMGF+LM+D+T+++SF ++++W++Q++ ++
Sbjct: 61 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120
Query: 127 AQVI-LVGNKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
I L+GNK D+ D+R ++ + + LA+ G+ +FETSA NV+ E L+D+I +
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180
Query: 186 MSESLD 191
M + ++
Sbjct: 181 MEQCVE 186
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 147 bits (371), Expect = 2e-45
Identities = 65/171 (38%), Positives = 112/171 (65%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QIWDT
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQERYR IT+AYYRGA+G +L+YD+ ++ +++ W+ +++ ++ N ++LVGNK D
Sbjct: 61 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
+ R + + + AE + F ETSA D+ NV+ F+ ++ I +S+
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 171
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 142 bits (358), Expect = 1e-43
Identities = 64/169 (37%), Positives = 105/169 (62%)
Query: 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+D++FK L+IGN+ GK+ L ++ + F T+G++F K + K VKLQIWDT
Sbjct: 2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61
Query: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD 137
AGQER+R++T +YYRGA G +L+YD+T+ E++ ++ +W+T + + N +IL GNK D
Sbjct: 62 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 121
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
++ +R ++F A+ + F ETSA NV+ F + I +K+
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 170
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 141 bits (356), Expect = 3e-43
Identities = 69/171 (40%), Positives = 103/171 (60%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
Y+FK +IIG++ VGK+ L ++ D F T+G++F + V K++KLQIWDTAG
Sbjct: 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
QE +R+IT +YYRGA G +L+YD+T E+F + W+ + +S N ++L+GNK D+E
Sbjct: 62 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESL 190
R + E G+ A G+ F ETSAK NV+ F I K+ + L
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 172
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 138 bits (347), Expect = 8e-42
Identities = 70/168 (41%), Positives = 101/168 (60%)
Query: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
D++ K+LIIG S VGK+S L R+ DD+F +T+G+DFKVKT+ + KL I
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
WDTAGQER+RT+T +YYRGA G IL+YDVT ++F + +W+ +++TY N V ++
Sbjct: 61 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
++ R + G A + F E SAK V+ FE LV+ I
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 132 bits (333), Expect = 6e-40
Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ D+ ++LQ+WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R++ +Y R + +++YD+TN SF WI ++T + ++LVGNK D+ D+
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
R +S E G+ A+ L V F ETSAK NVK +F R+ +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 127 bits (320), Expect = 7e-38
Identities = 62/163 (38%), Positives = 101/163 (61%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
Y FK++++G VGKTS + RY ++ F ++T+G F K + KRV L IWDTAG
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
QER+ + YYR + G IL+YD+T+E+SF +++W+ +++ + + +VGNK D+E
Sbjct: 62 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
ER +S + + AES+G + + TSAK N ++ +F L +
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 124 bits (311), Expect = 1e-36
Identities = 63/162 (38%), Positives = 99/162 (61%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
FKL+++G S+VGK+S + R+ F ST+G F +TV D VK +IWDTAGQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED 140
ERY ++ YYRGA I++YD+TNEESF ++W+ +++ + N + L GNK D+ +
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+R + F+ + A+ + F ETSAK ++NV +F + +
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 120 bits (301), Expect = 4e-35
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+K++++G+ VGK++ ++ +F + T+ DF K + L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCDMED 140
++ ++ Y + GFIL+Y + N++SF I+ QI ++ VILVGNK D+E
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
ER +S G+ LAE G F ETSAK V +F +V
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 119 bits (298), Expect = 1e-34
Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
+FK++++G+ VGK+S + RY + F + T+G++F K + V +QIWDTA
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY----SWDNAQVILVGN 134
GQER+R++ T +YRG+ +L + V + +SF ++ +W + Y ++ +++GN
Sbjct: 64 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
K D+ + +V + E ++ +FETSAKD NV FE V +
Sbjct: 124 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 116 bits (290), Expect = 3e-33
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 14/181 (7%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y + F S +V TV D TV + L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
Y + Y F++ + V + SF ++++ T+ +LVG + D+ D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 142 RVI------------SFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
+ E + LA L V++ E SA +K VF+ + +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 189 S 189
Sbjct: 183 K 183
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 115 bits (287), Expect = 8e-33
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 14/182 (7%)
Query: 14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQ 73
A M K +++G+ +VGKT L YA+D+F +V TV D +V K+ L
Sbjct: 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLG 60
Query: 74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
++DTAGQE Y + Y F++ + V N SF ++++ N +L+G
Sbjct: 61 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 120
Query: 134 NKCDMEDERV------------ISFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVD 180
+ D+ D+ I E+G+ LA+ +G + E SA +K VF+ +
Sbjct: 121 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180
Query: 181 II 182
I
Sbjct: 181 AI 182
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 113 bits (284), Expect = 1e-32
Identities = 58/161 (36%), Positives = 99/161 (61%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ ++G++ VGK+S ++R+ +DSF T+G F KTV ++ K IWDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
R+R + YYRG+ I++YD+T EE+F+++++W+ +++ + + V + GNKCD+ D
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
R + K A+S+ F ETSAK+ +N+ +F + I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 113 bits (283), Expect = 4e-32
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K +++G+ +VGKT L Y ++F ++ TV D V K V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
Y + Y ++ + + + SF +++ + N +ILVG K D+ D+
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124
Query: 142 RVIS------------FERGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
+ + +G +A+ +G V++ E SA +K VF+ + +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 112 bits (280), Expect = 5e-32
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G VGK++ + + F + T+ D K V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS-WDNAQVILVGNKCDMED 140
Y + Y R GF+ ++ + N +SF I + QIK D+ ++LVGNKCD+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+ + + LA S G+ + ETSAK V+ F LV I
Sbjct: 123 RT-VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 111 bits (278), Expect = 1e-31
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 2/163 (1%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++++G+ VGK++ ++ D F + T D K V + V++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD-NAQVILVGNKCDME 139
E Y I Y+R GF+ ++ +T ESF + D+ QI D N +LVGNK D+E
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
D+R +S E K+ A+ V + ETSAK NV VF L+ I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 111 bits (278), Expect = 1e-31
Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KL+++G ++VGK+S + R+ + F T+G F + V ++ VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM---E 139
+ ++ YYR A +++YDVT +SF + W+ ++ + + + LVGNK DM
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
ER ++ E G+ LAE G+ FFETSAK NV VF + + I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 110 bits (274), Expect = 5e-31
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L+++G VGK++ ++ F + + T+ D K D+ +L I DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDMED 140
+ + Y R GF+L++ VT+ SF I + Q ++ D +IL+GNK D++
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+R ++ E G+ LA L V + E SAK +NV F LV +I
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 109 bits (273), Expect = 7e-31
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 2/165 (1%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
KL+++G VGK++ ++ F S + D K +L I DTA
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDY-DPTIEDSYTKICSVDGIPARLDILDTA 62
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCD 137
GQE + + Y R GF+L++ + + +SF + TQI + D+ V+LVGNK D
Sbjct: 63 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122
Query: 138 MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+E +R + S V +FE SAK +NV FE+LV +
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 109 bits (273), Expect = 1e-30
Identities = 57/172 (33%), Positives = 101/172 (58%), Gaps = 4/172 (2%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+ K++I+G+S VGKTS + +Y + F++ + +T+G DF K V D+ V +QIWDTAGQ
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 81 ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY----SWDNAQVILVGNKC 136
ER++++ A+YRGA +L++DVT +F ++ W + +N +++GNK
Sbjct: 62 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121
Query: 137 DMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
D+E+ +V + + +FETSAK+ +NV+ F+ + + +E
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 173
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 107 bits (268), Expect = 3e-30
Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G+ VGK++ ++ F + T+ D K V ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
++ + Y + GF L+Y +T + +F +QD QI + ++ +ILVGNKCD+ED
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 141 ERVISFERGKHLAES-LGVEFFETSAKDNVNVKGVFERLVDII 182
ERV+ E+G++LA F E+SAK +NV +F LV I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 107 bits (267), Expect = 4e-30
Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
+FK+++IG+S+VGKT +R+ F +T+G+DF+ + V +R+K+Q+WDTAGQ
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 81 ERY-RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDM 138
ER+ +++ YYR + +YD+TN SF S+ WI + K + ++ ILVGNKCD+
Sbjct: 62 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121
Query: 139 EDERVISFERGKHLAESLGVEFFETSAK---DNVNVKGVFERL 178
+ + + A++ + FETSAK DN +V+ +F L
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 105 bits (262), Expect = 3e-29
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+++ + G VGK+S + R+ +F +++ TV ++ LQI DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS--WDNAQVILVGNKCDME 139
++ + FIL+Y +T+ +S ++ QI ++ ++LVGNKCD
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 140 DERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
R + + LA + F ETSAK N NVK +F+ L+++
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 104 bits (260), Expect = 5e-29
Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 7/169 (4%)
Query: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV-KLQIWDTAG 79
+ K++I+G+S VGKTS + RY +D ++ + +T+G DF K V +V +Q+WDTAG
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ----VILVGNK 135
QER++++ A+YRGA +L+YDVTN SF +I+ W + ++ N+ +++GNK
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121
Query: 136 CDMEDERVISFE-RGKHLAESLG-VEFFETSAKDNVNVKGVFERLVDII 182
D E+ + I E + LA+SLG + F TSAK+ +NV FE +
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 103 bits (257), Expect = 1e-28
Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 9/162 (5%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
++L++G + GKT+ L++ T K + +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDMED- 140
R + Y++ G I + D + E ++ + + + +A +++ NK D+ +
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 141 --ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVD 180
I+ + G H T A + + L +
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 103 bits (257), Expect = 2e-28
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 14/171 (8%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
KL+I+G+ + GKT L + D F +V TV + V + K+V+L +WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
Y + Y ++ + + + +S +I + T + N +ILVGNK D+ ++
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121
Query: 142 RVI------------SFERGKHLAESLG-VEFFETSAKDNVNVKGVFERLV 179
E G+ +A +G + E SAK V+ VFE
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 172
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 103 bits (256), Expect = 3e-28
Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 9/168 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++LI+G GKT+ L+R + T+G + + + K +KL +WD GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVETLS----YKNLKLNVWDLGGQT 72
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKT-YSWDNAQVILVGNKCDMED 140
R YY I + D T+++ ++ + + +A +++ NK D
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132
Query: 141 ---ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
+S E + +SA + + L+D+I ++
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 102 bits (254), Expect = 5e-28
Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++++G+S GKT+ L +A D F +V TV + + +R++L +WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMED-- 140
Y + Y + ++ +D++ E+ S+ N +++LVG K D+
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122
Query: 141 ----------ERVISFERGKHLAESLG-VEFFETSAKDNVN-VKGVFERLVDIICDK 185
+ +S+++G ++A+ +G + E SA + N V+ +F +K
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 102 bits (253), Expect = 6e-28
Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
K++++GN +VGK+S + RY FT + T+G+DF + + +D+ V+L +WDTAGQE
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDER 142
+ IT AYYRGA +L++ T+ ESF +I W ++ + LV NK D+ D+
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDDS 122
Query: 143 VISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
I E + LA+ L + F+ TS K+++NV VF+ L +
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 101 bits (251), Expect = 2e-27
Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 9/165 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++L++G + GKT+ L++ T K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMED 140
+ R + YY G G I + D + + + + +I +A +++ NK D+ D
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 141 ERV---ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
I + G + A + L
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 100 bits (250), Expect = 2e-27
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+KL+++G+ VGK++ ++ F + T+ D +K ++ L + DTAGQE
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
+ + Y R GF+++Y VT++ SF + + I + ++ +ILV NK D+
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123
Query: 141 ERVISFERGKHLAESLGVEFFETSAKD-NVNVKGVFERLVDII 182
R ++ ++GK +A + + ETSAKD +NV F LV +I
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 95.8 bits (237), Expect = 1e-25
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
KL I G + VGK++ + R+ F + T+ ++ + + V ++I DT +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD-EVVSMEILDT-AGQ 60
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWIT-QIKTYSWDNAQVILVGNKCDMED 140
+ R GF+L+YD+T+ SF + + N +ILVGNK D++
Sbjct: 61 EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDN-VNVKGVFERLVDII 182
R +S E G+ LA L F+E SA N+ +F L +
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 94.6 bits (234), Expect = 4e-25
Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D ++L++G + GKT+ L + A + S T G + K + KL +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIK----SVQSQGFKLNVWDIG 68
Query: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTY-SWDNAQVILVGNKCD 137
GQ + R +Y+ I + D + + F +T++ V++ NK D
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 138 MEDER---VISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+ I+ H + SA V+ + +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 94.0 bits (232), Expect = 7e-25
Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 9/168 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+LL++G + GKT+ L ++ + V T+ + KL IWD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMED 140
R+ Y+ G I + D + + Q + + A +++ NK D+
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117
Query: 141 ERVIS---FERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
+ S SA ++ + L+D I +
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 93.2 bits (230), Expect = 2e-24
Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
FKL+++G+ GKT+F+ R+ F +V+T+G++ + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
++ + YY A I+M+DVT+ ++ ++ +W + N ++L GNK D++D
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122
Query: 142 RVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+V + +++++ SAK N N + F L +
Sbjct: 123 KVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 93.1 bits (230), Expect = 4e-24
Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 43/198 (21%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
KLL++G GK++F+ + + V T GI + ++ D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGSG--VPTTGIIEYPFDLQSVIF----RMVDVGGQR 56
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEES-----------FTSIQDWITQIKTYSWDNAQVI 130
R + + + ++ + S + T I + N+ VI
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116
Query: 131 LVGNKCDMEDERVISFERGKHLAESLGVE--------------------------FFETS 164
L NK D+ +E+++ + E G + T
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176
Query: 165 AKDNVNVKGVFERLVDII 182
A D N++ VF + D I
Sbjct: 177 ATDTENIRFVFAAVKDTI 194
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 92.1 bits (227), Expect = 4e-24
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 2/159 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ I+G SVGK+S ++ + F ++ T+ + K + + + LQ+ DTAGQ+
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWI-TQIKTYSWDNAQVILVGNKCDMED 140
Y Y G+IL+Y VT+ +SF I+ + ++LVGNK D+
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
ERVIS+E GK LAES F E+SAK+N VF R++
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 92.0 bits (227), Expect = 5e-24
Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K++I+G + GKT+ L++++ + + +WD GQE
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQ-IKTYSWDNAQVILVGNKCDMED 140
R+ YY I++ D T+ E + ++ + + + A +++ NK D+++
Sbjct: 71 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130
Query: 141 ---ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
IS + A + E ++ +
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 89.0 bits (219), Expect = 6e-23
Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+K+L++G VGK++ + + +++ + L ++D Q+
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGP--EAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDN-AQVILVGNKCDMED 140
R + ++++Y VT++ SF + Q++ + +ILVGNK D+
Sbjct: 60 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119
Query: 141 ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
R +S + G+ A +F ETSA + NV+ +FE +V I +
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 165
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 86.6 bits (213), Expect = 5e-22
Identities = 26/171 (15%), Positives = 66/171 (38%), Gaps = 7/171 (4%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G++ GK+S + R+ S+ + + K + + + I + AG
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDE 141
+ + + D + ++ + + ++ ++ + LVG + +
Sbjct: 64 DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121
Query: 142 --RVISFERGKHLAESL-GVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
RV+ R + L + ++ET A +NV VF+ + + +
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 85.1 bits (209), Expect = 2e-21
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 9/168 (5%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
++LI+G GKT+ L+R T K +K Q+WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI-KTYSWDNAQVILVGNKCDMED 140
R YY I + D + + + + + + A +++ NK DME
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120
Query: 141 ERVIS---FERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
S G + + F+TSA + E LV+ + +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 84.7 bits (208), Expect = 2e-21
Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 16/168 (9%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
KLL +G + GKT+ L +D +T+ + + +K +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCD----- 137
R + Y+ G + + D + E F + + + + ++
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116
Query: 138 ------MEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
+++ + + VE F S F+ L
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 82.8 bits (203), Expect = 1e-20
Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 8/162 (4%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
+L ++G GKT+F+ A F + T V +++WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMED 140
R+R++ Y RG + M D ++E + ++ + + V+++GNK D+
Sbjct: 59 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118
Query: 141 ---ERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
E+ + + + + + S K+ N+ + L+
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 81.9 bits (201), Expect = 7e-20
Identities = 31/199 (15%), Positives = 58/199 (29%), Gaps = 45/199 (22%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+L++G GK++FL + T GI + ++ D GQ
Sbjct: 3 VKILLLGAGESGKSTFLKQMRIIHGQ---DPTKGIHEYDFEIKNVPF----KMVDVGGQR 55
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-----------DNAQVI 130
R + + + + + ++ N +I
Sbjct: 56 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115
Query: 131 LVGNKCDMEDERVISFERGKHLAESLG---------------------------VEFFET 163
L NK D+ +E+V + E G + T
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFT 175
Query: 164 SAKDNVNVKGVFERLVDII 182
+A + N++ VF + D I
Sbjct: 176 TAINTENIRLVFRDVKDTI 194
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 79.0 bits (193), Expect = 3e-19
Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 3/167 (1%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRHDKRVKLQIWDT 77
+ +++++IG VGK++ +A + + +G D +T+ + + + D
Sbjct: 1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60
Query: 78 A-GQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNK 135
+ + + ++++Y +T+ SF + Q++ ++ +ILVGNK
Sbjct: 61 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
D+ R +S G+ A +F ETSA NVK +FE +V +
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 79.8 bits (196), Expect = 5e-19
Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 20/192 (10%)
Query: 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
Q + +LL++G GK++ + + V T GI V +V ++
Sbjct: 1 QVYRATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKFQV----DKVNFHMF 52
Query: 76 DTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW----------- 124
D GQ R + I + ++ + +++
Sbjct: 53 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 112
Query: 125 DNAQVILVGNKCDMEDERVI-SFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIIC 183
VIL NK D+ E+V+ + + A R I
Sbjct: 113 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIR 172
Query: 184 DKMSESLDSDPN 195
D+ + +
Sbjct: 173 DEFLRISTASGD 184
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 76.5 bits (187), Expect = 6e-18
Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 46/198 (23%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
KLL++G GK++ + + + GI K + +++D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGI----VETHFTFKDLHFKMFDVGGQR 53
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSI-----------QDWITQIKTYSWDNAQVI 130
R + G I +++ + + + + + + + +I
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113
Query: 131 LVGNKCDMEDERVISFERGKHLAESLG--------------------------VEFFETS 164
L NK D+ +E++ E G + T
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173
Query: 165 AKDNVNVKGVFERLVDII 182
A D NV+ VF+ + D+I
Sbjct: 174 ATDTKNVQFVFDAVTDVI 191
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 72.8 bits (177), Expect = 1e-16
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 21/177 (11%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
KL+ +G + GKT+ L DD + + +
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELTIAGMTFTTFDLGG--HI 68
Query: 82 RYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSW-DNAQVILVGNKCDMED 140
+ R + Y G + + D + E ++ + + T N ++++GNK D +
Sbjct: 69 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128
Query: 141 ERVIS---------------FERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+ +E F S F + I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 70.0 bits (170), Expect = 2e-15
Identities = 19/201 (9%), Positives = 54/201 (26%), Gaps = 13/201 (6%)
Query: 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
+L +G GKT R + +++ + V + I +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 83 YRTITTAYYRGAMGFILMYDVTNEESF----TSIQDWITQIKTYSWDNAQVILVGNKCDM 138
+ + A + + D + + ++ +++ NK D+
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120
Query: 139 EDERVISFERGK--------HLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSESL 190
+ + + + S ++S+ + + E L
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 180
Query: 191 DSDPNLVAGPKGTRLTEQPQR 211
+ G G+ + ++
Sbjct: 181 ECSAKGGRGDTGSADIQDLEK 201
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 52.7 bits (125), Expect = 3e-09
Identities = 29/206 (14%), Positives = 64/206 (31%), Gaps = 27/206 (13%)
Query: 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
Y ++I G + GKTS L DS TV + V + D G
Sbjct: 2 YQPSIIIAGPQNSGKTSLLTLLTTDS----VRPTVVSQEPLSAADYDGSGV--TLVDFPG 55
Query: 80 QERYRTITTAYY-----RGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQ----VI 130
+ R + Y ++ + + T+ +++ I + + + + ++
Sbjct: 56 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115
Query: 131 LVGNKCDMEDERVISFERGKHLAE--------SLGVEFFETSAKDNVNVKGVFERLVDII 182
+ NK ++ R S + +E + E + E +D++
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDY----AENTLDVL 171
Query: 183 CDKMSESLDSDPNLVAGPKGTRLTEQ 208
+ V +G+ +
Sbjct: 172 QSTDGFKFANLEASVVAFEGSINKRK 197
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 50.1 bits (118), Expect = 1e-08
Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 19/172 (11%)
Query: 22 FKLLIIGNSSVGKTSFLFRY-------ADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQI 74
K++I G + GK+S L D + L+
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 75 WDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
+ A + M D T ++ + W I + +V N
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL-PITVVRN 120
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKM 186
K D+ E ++E G SA+ V + L + + M
Sbjct: 121 KADITGET-------LGMSEVNGHALIRLSARTGEGV----DVLRNHLKQSM 161
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 44.0 bits (103), Expect = 6e-06
Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 10/157 (6%)
Query: 6 ETKWQKDAADQNFDYMFKLLIIGNSSVGKTSFL--FRYADDSFTSAFVSTVGIDFKVKTV 63
DA + + + + G + GK+SF+ R + A + V +
Sbjct: 41 TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP 100
Query: 64 FRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYS 123
++H + WD G Y YD S T + I
Sbjct: 101 YKHPNIPNVVFWDLPGIGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAI 158
Query: 124 WD-NAQVILVGNKCDM-----EDERVISFERGKHLAE 154
+ V K D D +F++ K L +
Sbjct: 159 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD 195
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 42.0 bits (97), Expect = 1e-05
Identities = 20/174 (11%), Positives = 51/174 (29%), Gaps = 20/174 (11%)
Query: 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTV----GIDFKVKTVFRHDKRVKLQIWDTAGQE 81
I+G +VGK++ L + +S + + DT G
Sbjct: 10 IVGRPNVGKSTLL-----NKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 64
Query: 82 RYRTITTAYYRGAMGFILMYD------VTNEESFTSIQDWITQIKTYSWDNAQVILVGNK 135
+ D V +T + + ++ V
Sbjct: 65 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAP-VILAVNKV 123
Query: 136 CDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSES 189
+++++ + ++ ++ SA+ +NV + + I+ + E+
Sbjct: 124 DNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV----DTIAAIVRKHLPEA 173
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 41.9 bits (97), Expect = 1e-05
Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 19/169 (11%)
Query: 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT----VFRHDKRVKLQIWDTAG-- 79
++G + GK+S L + T A F + V + + + D G
Sbjct: 6 LVGYPNAGKSSLL-----AAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 60
Query: 80 -----QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNA-QVILVG 133
+ + + + D +E T ++
Sbjct: 61 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
NK D+ +E + + G+ SA + + E L ++
Sbjct: 121 NKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPALKEALHALV 167
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 40.1 bits (92), Expect = 7e-05
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 9/166 (5%)
Query: 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG------ 79
+ G S+VGK+SF+ + + S G + +D+ + +
Sbjct: 28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKS 87
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
+ Y + + D + + + VI++ K D
Sbjct: 88 EREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147
Query: 140 DERVISF---ERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
+ + L E S++ + + +I
Sbjct: 148 PKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 39.0 bits (89), Expect = 2e-04
Identities = 18/165 (10%), Positives = 44/165 (26%), Gaps = 13/165 (7%)
Query: 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT 85
I+G +VGK++ L ++ V+ + + + +
Sbjct: 10 IVGKPNVGKSTLL-----NNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH 64
Query: 86 ITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERVIS 145
M + + + + + D A+ +
Sbjct: 65 KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNK 124
Query: 146 FERGKHLAESL--------GVEFFETSAKDNVNVKGVFERLVDII 182
+ K+ E++ E SA D V + L+ ++
Sbjct: 125 LDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 38.2 bits (87), Expect = 3e-04
Identities = 21/170 (12%), Positives = 51/170 (30%), Gaps = 10/170 (5%)
Query: 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTA 78
D ++ G S+ GK+S L + + T G + D + + +
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73
Query: 79 GQ-------ERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVIL 131
+++ Y + + + D + A ++L
Sbjct: 74 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133
Query: 132 VGNKCDM---EDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERL 178
+ + + ++ R LA + V+ S+ V + ++L
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 36.3 bits (82), Expect = 0.001
Identities = 18/165 (10%), Positives = 40/165 (24%), Gaps = 2/165 (1%)
Query: 26 IIGNSSVGKTSFL--FRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83
I+G +VGK++ + + + + +
Sbjct: 5 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64
Query: 84 RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDMEDERV 143
V + + V + E+ R
Sbjct: 65 IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE 124
Query: 144 ISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDKMSE 188
E L E SA+ N+N+ + E ++ + +K +
Sbjct: 125 FEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLD 169
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 35.8 bits (81), Expect = 0.001
Identities = 23/180 (12%), Positives = 46/180 (25%), Gaps = 20/180 (11%)
Query: 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRT 85
G S+VGK++ ++R V H G +
Sbjct: 5 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQ 64
Query: 86 ITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWD----------------NAQV 129
++ + IK + +
Sbjct: 65 ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 124
Query: 130 ILVGNKCDMEDERVISF----ERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDIICDK 185
I+ NK D E+ + + F SAK N++ + R+ ++I ++
Sbjct: 125 IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 35.0 bits (79), Expect = 0.004
Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 14/174 (8%)
Query: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
K+ I+G +VGK++ + + G K DTAG
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67
Query: 82 RYRTITTAYYRGAMGFILMYDVTN--------EESFTSIQDWITQIKTYSWDNAQVILVG 133
R + + ++ + + + + ++V
Sbjct: 68 RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127
Query: 134 NKCDMEDERVISFERGKHLAESL-----GVEFFETSAKDNVNVKGVFERLVDII 182
NK D+ R ++ L TSA N+ + + +
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 181
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 34.9 bits (79), Expect = 0.004
Identities = 24/169 (14%), Positives = 47/169 (27%), Gaps = 15/169 (8%)
Query: 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY-- 83
++G SVGK++ L + A + + V D R + D G
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-SFVMADLPGLIEGAH 64
Query: 84 ----------RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVG 133
R I + + + + + I+V
Sbjct: 65 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124
Query: 134 NKCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLVDII 182
NK DM + + L + F SA ++ + + + +
Sbjct: 125 NKMDMPEAAENLEAFKEKLTD--DYPVFPISAVTREGLRELLFEVANQL 171
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 32.6 bits (73), Expect = 0.015
Identities = 21/165 (12%), Positives = 46/165 (27%), Gaps = 17/165 (10%)
Query: 23 KLLIIGNSSVGKTSFLFR-------YADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIW 75
+++I+G +VGK++ L R D + +FR ++
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 76 DTAGQERYRTITT-AYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGN 134
ER T A + + D ++ + + V
Sbjct: 62 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVE 121
Query: 135 KCDMEDERVISFERGKHLAESLGVEFFETSAKDNVNVKGVFERLV 179
K + E+ + + SA ++ + E +
Sbjct: 122 KINEEEIK---------NKLGTDRHMVKISALKGEGLEKLEESIY 157
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.4 bits (65), Expect = 0.29
Identities = 14/137 (10%), Positives = 35/137 (25%), Gaps = 12/137 (8%)
Query: 22 FKLLIIGNSSVGKTSFL--------FRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV--K 71
+L++G VGK+S + + V T+ D +
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92
Query: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTN-EESFTSIQDWITQIKTYSWDNAQVI 130
+ ++ + ++ D + + IT N + I
Sbjct: 93 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN-KAI 151
Query: 131 LVGNKCDMEDERVISFE 147
+ + ++
Sbjct: 152 VALTHAQFSPPDGLPYD 168
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId:
1351]}
Length = 65
Score = 25.4 bits (55), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 140 DERVISFERGKHLAESLGVEFFETSAK 166
D R IS E +E LGV FFE +
Sbjct: 37 DSRPISVEELSKFSERLGVNFFEILNR 63
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 26.2 bits (57), Expect = 2.9
Identities = 21/147 (14%), Positives = 38/147 (25%), Gaps = 23/147 (15%)
Query: 55 GIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQD 114
GI V D G Y G IL+ N+ ++
Sbjct: 51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAA-NDGPMPQTRE 109
Query: 115 WITQIKTYSWDNAQVILVGNKCDMEDERVISFERGKH----LAESLG-----VEFFETSA 165
+ + V++ NK D + + E + L G SA
Sbjct: 110 HLLLARQI--GVEHVVVYVNKADAVQDSEM-VELVELEIRELLTEFGYKGEETPIIVGSA 166
Query: 166 KDNV----------NVKGVFERLVDII 182
+ +V+ + + + I
Sbjct: 167 LCALEQRDPELGLKSVQKLLDAVDTYI 193
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 26.2 bits (56), Expect = 3.2
Identities = 28/222 (12%), Positives = 55/222 (24%), Gaps = 58/222 (26%)
Query: 26 IIGNSSVGKTSFL----------------FRYADDSFTSAFVSTVGIDFKVKTVFRHDKR 69
++G+ GKT+ L ++ + V +K +
Sbjct: 10 VLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETL 69
Query: 70 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQV 129
L DT G E + T+ A IL+ D+ + +
Sbjct: 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRMYRTPF 125
Query: 130 ILVGNKCDMEDERVISF-----------------ERGKHLAESLG--------------- 157
++ NK D + + + E +G
Sbjct: 126 VVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRV 185
Query: 158 ------VEFFETSAKDNVNVKGVFERLVDIICDKMSESLDSD 193
V SA + + L+ + + E L +
Sbjct: 186 TDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIE 227
>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 562
Score = 26.3 bits (58), Expect = 3.5
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 105 NEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
+E F ++ + Q T W+N + N +
Sbjct: 154 SEHVFCALARLVVQCITSYWNNTRCAAFVNDYSL 187
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.8 bits (55), Expect = 4.9
Identities = 11/134 (8%), Positives = 30/134 (22%), Gaps = 6/134 (4%)
Query: 25 LIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYR 84
++ GK+ + A + VG ++ + I
Sbjct: 33 ALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAH 92
Query: 85 TITTAYYRGAMGFILM------YDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDM 138
A G ++ ++ E F ++ + D + + +
Sbjct: 93 LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENAS 152
Query: 139 EDERVISFERGKHL 152
+
Sbjct: 153 GPMAQVIGRMEAIA 166
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.1 bits (53), Expect = 6.7
Identities = 12/132 (9%), Positives = 39/132 (29%), Gaps = 4/132 (3%)
Query: 21 MFKLLII-GNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
M K+++ G GK+++ + + ++ +++ H++R + +
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYR---QSIMAHEERDEYKYTKKKE 57
Query: 80 QERYRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKCDME 139
G + V ++ + + + +V
Sbjct: 58 GIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWT 117
Query: 140 DERVISFERGKH 151
+ + +RG
Sbjct: 118 ELVKRNSKRGTK 129
>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1
[TaxId: 28214]}
Length = 351
Score = 25.0 bits (54), Expect = 7.6
Identities = 3/36 (8%), Positives = 12/36 (33%)
Query: 84 RTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQI 119
+ A A+ ++ + + W+ ++
Sbjct: 136 VEWSAATAAFALSTMMAEPNVDTAQRERVVKWLNRV 171
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.2 bits (53), Expect = 7.6
Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 7/126 (5%)
Query: 24 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER- 82
++G GKT L + + V I+ + F + + R
Sbjct: 46 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG 105
Query: 83 ------YRTITTAYYRGAMGFILMYDVTNEESFTSIQDWITQIKTYSWDNAQVILVGNKC 136
+ + L+ D + + +I + A I +
Sbjct: 106 LSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 165
Query: 137 DMEDER 142
+
Sbjct: 166 HNDAVL 171
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 25.0 bits (54), Expect = 7.8
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 23 KLLIIGNSSVGKTSFLF---RYADDSFTSAFVSTVGIDFKVKTVFRHDKRVK-LQIWDTA 78
+ LI+ GKT L + + + + ID + + V + VK + T
Sbjct: 45 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTF 104
Query: 79 GQERYRTITTAYYRGAMGFILMY 101
+ R + A L+
Sbjct: 105 DEPASRHVQVAEMVIEKAKRLVE 127
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 24.6 bits (52), Expect = 8.8
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 23 KLLIIGNSSVGKTSFL 38
K++I G VGKT+ +
Sbjct: 2 KIIITGEPGVGKTTLV 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 807,291
Number of extensions: 35250
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 86
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)