Query psy2301
Match_columns 350
No_of_seqs 233 out of 1461
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:14:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0809|consensus 100.0 4E-44 8.6E-49 323.4 26.6 251 26-298 54-304 (305)
2 KOG0810|consensus 100.0 8.2E-43 1.8E-47 324.3 29.8 254 26-298 33-292 (297)
3 COG5074 t-SNARE complex subuni 100.0 7.2E-32 1.6E-36 235.5 24.0 249 29-299 21-272 (280)
4 KOG0811|consensus 100.0 1.2E-28 2.5E-33 225.9 30.4 247 26-297 14-265 (269)
5 KOG0812|consensus 100.0 2.2E-28 4.7E-33 220.1 28.6 262 25-294 37-309 (311)
6 COG5325 t-SNARE complex subuni 100.0 1.8E-27 3.9E-32 213.9 24.4 248 25-296 30-279 (283)
7 cd00179 SynN Syntaxin N-termin 99.6 2.1E-14 4.6E-19 122.6 17.6 141 28-187 1-144 (151)
8 PF05739 SNARE: SNARE domain; 99.6 2E-14 4.4E-19 104.5 10.0 63 209-271 1-63 (63)
9 cd00193 t_SNARE Soluble NSF (N 99.4 3.9E-13 8.4E-18 96.3 7.4 59 208-266 2-60 (60)
10 smart00503 SynN Syntaxin N-ter 99.4 1.6E-11 3.4E-16 100.1 15.0 114 27-142 2-117 (117)
11 PF00804 Syntaxin: Syntaxin; 99.4 1.2E-11 2.5E-16 98.3 13.3 98 28-127 2-103 (103)
12 smart00397 t_SNARE Helical reg 99.3 7.3E-12 1.6E-16 91.3 8.8 63 204-266 4-66 (66)
13 KOG3202|consensus 99.3 6.3E-09 1.4E-13 94.1 25.7 213 26-280 3-220 (235)
14 KOG3894|consensus 98.8 3.5E-06 7.5E-11 78.3 23.6 94 192-285 209-305 (316)
15 PF14523 Syntaxin_2: Syntaxin- 98.5 5.7E-06 1.2E-10 65.7 14.3 100 38-143 1-100 (102)
16 KOG0810|consensus 98.0 0.0017 3.6E-08 61.3 21.9 206 73-295 85-292 (297)
17 KOG3385|consensus 97.8 0.00022 4.8E-09 56.9 8.9 75 209-285 33-107 (118)
18 COG5074 t-SNARE complex subuni 97.7 0.029 6.2E-07 50.4 22.4 85 211-295 177-265 (280)
19 PF00957 Synaptobrevin: Synapt 97.4 0.0053 1.2E-07 47.4 11.9 49 212-260 3-51 (89)
20 KOG0860|consensus 96.9 0.028 6.1E-07 45.2 11.9 40 212-251 29-68 (116)
21 KOG1666|consensus 96.5 0.56 1.2E-05 41.8 23.4 63 211-273 134-196 (220)
22 PF09753 Use1: Membrane fusion 96.4 0.07 1.5E-06 49.4 12.7 52 212-266 170-221 (251)
23 KOG0811|consensus 96.3 0.99 2.1E-05 42.1 22.2 92 201-296 176-267 (269)
24 KOG3065|consensus 94.8 0.11 2.5E-06 48.4 7.5 57 209-265 215-271 (273)
25 PF03908 Sec20: Sec20; InterP 93.6 2.4 5.2E-05 32.8 11.8 62 233-297 29-90 (92)
26 COG5325 t-SNARE complex subuni 93.2 7.3 0.00016 36.2 19.2 90 206-295 182-274 (283)
27 PF09753 Use1: Membrane fusion 92.4 2.5 5.4E-05 39.1 12.2 67 206-275 156-227 (251)
28 PF09177 Syntaxin-6_N: Syntaxi 91.9 2.1 4.5E-05 33.5 9.5 88 29-126 1-96 (97)
29 PF00957 Synaptobrevin: Synapt 91.7 4.8 0.0001 30.7 12.3 19 203-221 22-40 (89)
30 PF11166 DUF2951: Protein of u 90.8 6.4 0.00014 30.5 11.6 80 212-294 11-91 (98)
31 PF09889 DUF2116: Uncharacteri 89.0 0.81 1.8E-05 32.5 4.2 22 266-287 28-49 (59)
32 PF14992 TMCO5: TMCO5 family 88.9 20 0.00044 33.6 19.4 57 204-260 122-178 (280)
33 PF05478 Prominin: Prominin; 87.1 50 0.0011 36.0 27.2 56 212-269 357-412 (806)
34 PF03904 DUF334: Domain of unk 86.2 26 0.00056 31.8 13.1 45 249-295 122-166 (230)
35 KOG3251|consensus 86.0 26 0.00056 31.5 23.4 46 235-280 152-197 (213)
36 PF12352 V-SNARE_C: Snare regi 84.7 12 0.00026 26.7 9.6 56 213-268 9-64 (66)
37 KOG0964|consensus 84.2 71 0.0015 35.1 22.7 68 201-268 421-502 (1200)
38 KOG0860|consensus 84.0 6.4 0.00014 31.9 7.4 22 201-222 46-67 (116)
39 KOG3202|consensus 81.7 7 0.00015 35.8 7.7 29 267-295 204-232 (235)
40 PF10779 XhlA: Haemolysin XhlA 80.8 20 0.00042 26.3 9.1 43 238-284 18-60 (71)
41 PRK14710 hypothetical protein; 79.8 2.1 4.5E-05 31.3 2.8 6 299-304 25-30 (86)
42 KOG2678|consensus 78.6 38 0.00083 30.6 11.0 34 234-267 177-210 (244)
43 PHA02844 putative transmembran 78.5 2.4 5.3E-05 31.2 2.9 20 275-294 48-67 (75)
44 PF05667 DUF812: Protein of un 78.3 93 0.002 32.6 16.2 38 210-247 545-582 (594)
45 cd00193 t_SNARE Soluble NSF (N 77.0 20 0.00044 24.4 7.9 57 216-272 3-59 (60)
46 KOG3065|consensus 76.3 21 0.00046 33.5 9.3 51 215-265 82-132 (273)
47 PF04886 PT: PT repeat; Inter 72.2 3.3 7.2E-05 26.3 2.0 25 314-338 7-31 (36)
48 PF03908 Sec20: Sec20; InterP 72.2 42 0.00091 25.8 11.6 28 261-288 60-87 (92)
49 PHA02650 hypothetical protein; 70.9 5.2 0.00011 29.9 3.1 9 289-297 63-71 (81)
50 KOG1666|consensus 70.6 15 0.00032 33.0 6.4 48 247-294 163-214 (220)
51 PHA02975 hypothetical protein; 70.1 7 0.00015 28.4 3.5 16 275-290 44-59 (69)
52 PRK10884 SH3 domain-containing 69.7 84 0.0018 28.2 13.4 71 224-294 116-189 (206)
53 PRK14710 hypothetical protein; 68.6 3.9 8.5E-05 29.8 2.0 24 303-326 42-65 (86)
54 PF12575 DUF3753: Protein of u 68.0 4 8.7E-05 30.1 1.9 13 278-290 48-60 (72)
55 PF04505 Dispanin: Interferon- 67.2 4.7 0.0001 30.6 2.3 34 254-287 44-77 (82)
56 PF09889 DUF2116: Uncharacteri 66.6 18 0.00039 25.7 5.0 32 259-290 24-55 (59)
57 PF00523 Fusion_gly: Fusion gl 66.6 9.3 0.0002 38.9 4.9 36 240-276 432-467 (490)
58 KOG0859|consensus 65.2 15 0.00032 32.6 5.2 58 212-272 125-182 (217)
59 PRK04325 hypothetical protein; 64.2 57 0.0012 24.2 7.7 46 214-259 11-56 (74)
60 PF02346 Vac_Fusion: Chordopox 63.6 40 0.00087 23.8 6.2 44 213-256 2-45 (57)
61 PF07423 DUF1510: Protein of u 62.9 8.8 0.00019 34.7 3.6 12 268-279 5-16 (217)
62 PF07423 DUF1510: Protein of u 62.1 8.1 0.00018 35.0 3.2 33 269-301 3-35 (217)
63 KOG3850|consensus 61.7 1.7E+02 0.0037 28.8 18.6 20 78-97 99-118 (455)
64 KOG2678|consensus 61.7 98 0.0021 28.1 9.8 52 216-270 155-206 (244)
65 KOG3208|consensus 61.0 1.3E+02 0.0028 27.3 22.9 51 227-278 164-214 (231)
66 PF04102 SlyX: SlyX; InterPro 59.5 49 0.0011 24.1 6.4 49 212-260 4-52 (69)
67 PF10779 XhlA: Haemolysin XhlA 58.9 68 0.0015 23.4 9.1 6 277-282 50-55 (71)
68 PF12575 DUF3753: Protein of u 58.5 7.7 0.00017 28.6 2.0 26 272-297 45-70 (72)
69 KOG0260|consensus 57.7 8.2 0.00018 42.8 2.8 12 261-272 1380-1391(1605)
70 PF05739 SNARE: SNARE domain; 57.6 62 0.0013 22.5 8.4 55 219-273 4-58 (63)
71 PF10168 Nup88: Nuclear pore c 57.1 2.8E+02 0.006 29.9 19.1 22 205-226 692-713 (717)
72 PRK14762 membrane protein; Pro 56.1 24 0.00053 20.4 3.3 20 279-298 6-25 (27)
73 PF03915 AIP3: Actin interacti 54.2 2.4E+02 0.0052 28.3 13.7 158 33-239 169-326 (424)
74 PF01519 DUF16: Protein of unk 54.1 88 0.0019 24.7 7.3 49 209-257 50-98 (102)
75 PF09548 Spore_III_AB: Stage I 54.1 44 0.00096 28.8 6.4 29 256-284 133-162 (170)
76 TIGR02833 spore_III_AB stage I 53.9 45 0.00097 28.9 6.4 27 258-284 135-162 (170)
77 PRK00295 hypothetical protein; 53.4 85 0.0018 22.8 7.4 46 214-259 7-52 (68)
78 PRK08307 stage III sporulation 53.3 47 0.001 28.8 6.4 28 257-284 135-163 (171)
79 PHA02673 ORF109 EEV glycoprote 53.2 18 0.00039 30.9 3.6 24 261-284 16-39 (161)
80 smart00397 t_SNARE Helical reg 51.7 76 0.0017 21.8 9.2 57 213-269 6-62 (66)
81 PF05957 DUF883: Bacterial pro 51.0 1.1E+02 0.0024 23.4 11.1 41 218-258 8-49 (94)
82 PRK04778 septation ring format 50.2 3.2E+02 0.0069 28.4 18.6 71 25-99 63-134 (569)
83 COG4942 Membrane-bound metallo 49.2 1.7E+02 0.0036 29.3 10.1 64 206-269 39-102 (420)
84 PF11598 COMP: Cartilage oligo 48.3 35 0.00077 22.8 3.7 26 215-240 4-29 (45)
85 KOG1693|consensus 48.2 86 0.0019 28.0 7.1 17 209-225 128-144 (209)
86 PRK02793 phi X174 lysis protei 48.0 1.1E+02 0.0024 22.5 7.3 47 212-258 8-54 (72)
87 PF06072 Herpes_US9: Alphaherp 47.4 51 0.0011 23.4 4.5 12 259-270 11-22 (60)
88 PRK00736 hypothetical protein; 47.4 1.1E+02 0.0023 22.3 7.3 45 214-258 7-51 (68)
89 PHA02675 ORF104 fusion protein 46.8 99 0.0021 23.5 6.2 40 219-258 37-76 (90)
90 PHA03240 envelope glycoprotein 46.7 17 0.00036 32.7 2.5 12 273-284 210-221 (258)
91 KOG0994|consensus 46.5 5E+02 0.011 29.7 21.3 59 28-91 1424-1482(1758)
92 COG2332 CcmE Cytochrome c-type 46.2 20 0.00042 30.4 2.7 22 277-298 9-30 (153)
93 PF05568 ASFV_J13L: African sw 46.1 27 0.00059 29.4 3.5 21 276-296 31-51 (189)
94 KOG1326|consensus 46.1 19 0.00041 39.4 3.2 29 277-305 1071-1099(1105)
95 PF04790 Sarcoglycan_1: Sarcog 45.7 22 0.00049 33.1 3.4 24 272-295 8-31 (264)
96 PF15106 TMEM156: TMEM156 prot 44.9 25 0.00054 31.5 3.3 22 277-298 176-197 (226)
97 PF06160 EzrA: Septation ring 44.5 3.8E+02 0.0083 27.8 21.7 70 25-98 59-129 (560)
98 PF00523 Fusion_gly: Fusion gl 44.3 17 0.00037 37.0 2.6 32 241-272 439-470 (490)
99 PF00429 TLV_coat: ENV polypro 44.1 77 0.0017 33.0 7.4 42 204-245 434-479 (561)
100 PHA02849 putative transmembran 44.0 32 0.00069 25.7 3.2 23 277-299 19-41 (82)
101 PF03563 Bunya_G2: Bunyavirus 43.3 20 0.00044 33.2 2.6 13 238-250 176-188 (285)
102 PHA02650 hypothetical protein; 42.7 37 0.00081 25.4 3.4 14 277-290 48-61 (81)
103 KOG0812|consensus 42.6 3E+02 0.0066 26.0 12.5 93 204-296 212-308 (311)
104 COG5278 Predicted periplasmic 41.5 2.6E+02 0.0057 25.1 11.1 18 269-286 177-194 (207)
105 TIGR00606 rad50 rad50. This fa 41.2 6.2E+02 0.014 29.3 25.8 41 212-252 984-1024(1311)
106 COG4698 Uncharacterized protei 40.8 29 0.00062 30.4 3.0 20 275-294 10-29 (197)
107 PF04799 Fzo_mitofusin: fzo-li 40.2 2.5E+02 0.0054 24.4 8.8 30 70-99 113-142 (171)
108 PHA02657 hypothetical protein; 40.1 39 0.00084 25.8 3.2 23 278-300 30-52 (95)
109 PRK04406 hypothetical protein; 39.9 1.6E+02 0.0034 21.9 7.3 47 212-258 11-57 (75)
110 COG1459 PulF Type II secretory 39.8 1.5E+02 0.0032 29.5 8.3 23 232-254 111-133 (397)
111 PF11395 DUF2873: Protein of u 39.5 48 0.001 21.1 3.0 13 282-294 14-26 (43)
112 PF03310 Cauli_DNA-bind: Cauli 39.5 1.8E+02 0.0038 23.8 7.2 22 68-89 36-57 (121)
113 COG4640 Predicted membrane pro 39.2 35 0.00075 33.6 3.6 35 257-291 30-64 (465)
114 PF07851 TMPIT: TMPIT-like pro 39.1 1.7E+02 0.0038 28.2 8.3 19 116-134 70-88 (330)
115 PHA03054 IMV membrane protein; 39.0 48 0.001 24.3 3.4 17 275-291 45-61 (72)
116 KOG0994|consensus 38.9 6.5E+02 0.014 28.9 22.8 69 32-101 1414-1485(1758)
117 PHA02844 putative transmembran 38.6 48 0.001 24.6 3.5 16 275-290 45-60 (75)
118 PRK02119 hypothetical protein; 38.5 1.6E+02 0.0035 21.7 7.5 47 212-258 9-55 (73)
119 COG4068 Uncharacterized protei 38.0 41 0.00088 23.8 2.8 10 263-272 33-42 (64)
120 PF10669 Phage_Gp23: Protein g 37.9 46 0.001 26.0 3.4 21 277-297 15-35 (121)
121 PF14812 PBP1_TM: Transmembran 37.8 1.9 4.1E-05 32.6 -4.0 11 270-280 61-71 (81)
122 PHA02819 hypothetical protein; 37.3 52 0.0011 24.1 3.4 22 269-290 36-58 (71)
123 PRK13150 cytochrome c-type bio 36.9 44 0.00096 28.7 3.6 29 278-306 10-41 (159)
124 PF05008 V-SNARE: Vesicle tran 36.7 1.7E+02 0.0036 21.4 8.8 30 208-237 21-50 (79)
125 PF07432 Hc1: Histone H1-like 36.6 2.3E+02 0.005 23.0 7.5 50 76-134 3-52 (123)
126 COG2443 Sss1 Preprotein transl 36.2 1.4E+02 0.003 21.7 5.4 50 245-294 4-53 (65)
127 PF09403 FadA: Adhesion protei 35.5 2.5E+02 0.0055 23.1 9.8 89 35-142 22-110 (126)
128 smart00502 BBC B-Box C-termina 35.3 2.2E+02 0.0047 22.2 8.3 53 217-269 37-90 (127)
129 KOG1842|consensus 35.1 4.9E+02 0.011 26.3 17.3 103 22-129 264-368 (505)
130 PF04906 Tweety: Tweety; Inte 34.9 1E+02 0.0022 30.6 6.4 11 218-228 124-134 (406)
131 PF07106 TBPIP: Tat binding pr 34.6 2.9E+02 0.0063 23.5 13.9 65 28-99 74-138 (169)
132 KOG0972|consensus 34.4 4.1E+02 0.009 25.3 11.7 56 29-89 201-264 (384)
133 PF04420 CHD5: CHD5-like prote 34.4 1.9E+02 0.004 24.8 7.1 22 254-275 73-94 (161)
134 PF10496 Syntaxin-18_N: SNARE- 34.3 93 0.002 23.4 4.7 35 24-58 34-68 (87)
135 smart00806 AIP3 Actin interact 34.0 5E+02 0.011 26.0 18.5 169 34-238 218-406 (426)
136 KOG1962|consensus 32.7 3.8E+02 0.0082 24.3 10.1 52 73-137 151-202 (216)
137 PRK10573 type IV pilin biogene 32.7 49 0.0011 32.5 3.7 36 216-251 110-145 (399)
138 PF10498 IFT57: Intra-flagella 32.4 4.9E+02 0.011 25.5 13.4 18 25-42 190-207 (359)
139 PF09125 COX2-transmemb: Cytoc 31.6 83 0.0018 20.0 3.2 9 277-285 15-23 (38)
140 PHA03164 hypothetical protein; 31.4 62 0.0014 24.1 3.1 25 272-296 57-81 (88)
141 KOG3950|consensus 31.4 52 0.0011 30.2 3.2 22 273-294 32-53 (292)
142 PRK09400 secE preprotein trans 31.3 1.5E+02 0.0032 21.2 5.0 49 247-295 5-53 (61)
143 PHA02414 hypothetical protein 31.2 2.6E+02 0.0056 21.9 8.2 45 213-257 30-74 (111)
144 TIGR01732 tiny_TM_bacill conse 31.0 54 0.0012 19.2 2.1 7 289-295 14-20 (26)
145 PRK00846 hypothetical protein; 30.6 2.3E+02 0.0051 21.2 7.3 48 213-260 14-61 (77)
146 PF01102 Glycophorin_A: Glycop 30.4 72 0.0016 26.2 3.7 20 275-294 65-84 (122)
147 PRK11020 hypothetical protein; 30.4 2.4E+02 0.0052 22.8 6.4 22 38-59 3-24 (118)
148 PF00558 Vpu: Vpu protein; In 30.2 55 0.0012 24.8 2.7 23 281-303 8-30 (81)
149 PF11239 DUF3040: Protein of u 29.9 62 0.0014 24.3 3.1 19 241-259 10-28 (82)
150 KOG3287|consensus 29.8 2.4E+02 0.0052 25.6 7.0 19 241-259 154-172 (236)
151 PF05531 NPV_P10: Nucleopolyhe 29.5 2.4E+02 0.0052 21.0 7.0 56 37-98 8-63 (75)
152 PRK13254 cytochrome c-type bio 29.3 73 0.0016 27.0 3.7 19 278-296 10-28 (148)
153 PF10146 zf-C4H2: Zinc finger- 29.2 4.5E+02 0.0097 24.0 12.5 19 42-60 3-21 (230)
154 PF09680 Tiny_TM_bacill: Prote 29.2 53 0.0012 18.8 1.9 7 289-295 12-18 (24)
155 PRK13165 cytochrome c-type bio 28.9 74 0.0016 27.4 3.7 21 278-298 10-30 (160)
156 PRK13673 hypothetical protein; 28.8 1.2E+02 0.0026 24.7 4.7 30 259-288 75-104 (118)
157 KOG3251|consensus 28.5 3.3E+02 0.0072 24.6 7.8 52 36-101 6-57 (213)
158 PRK08455 fliL flagellar basal 28.4 23 0.00049 31.2 0.4 8 273-280 16-23 (182)
159 PF01540 Lipoprotein_7: Adhesi 28.1 5.1E+02 0.011 24.3 10.0 49 29-90 217-265 (353)
160 PF13829 DUF4191: Domain of un 28.0 1.2E+02 0.0026 27.6 5.0 21 260-280 10-30 (224)
161 PF05615 THOC7: Tho complex su 28.0 3.4E+02 0.0074 22.3 9.2 59 215-273 56-114 (139)
162 COG1459 PulF Type II secretory 27.7 2.6E+02 0.0056 27.8 7.8 53 205-258 301-353 (397)
163 KOG0568|consensus 27.7 2E+02 0.0044 26.2 6.3 67 24-96 251-318 (342)
164 PF04065 Not3: Not1 N-terminal 27.6 4.8E+02 0.01 23.9 12.0 90 35-136 7-96 (233)
165 KOG2459|consensus 27.4 91 0.002 31.9 4.5 46 213-263 419-464 (536)
166 PF09548 Spore_III_AB: Stage I 27.4 1.8E+02 0.004 24.9 6.0 41 242-285 126-166 (170)
167 PF09911 DUF2140: Uncharacteri 27.4 39 0.00084 29.8 1.8 20 275-294 2-21 (187)
168 TIGR02120 GspF general secreti 27.4 1.5E+02 0.0033 29.0 6.2 31 227-257 325-355 (399)
169 PF06143 Baculo_11_kDa: Baculo 27.3 1.4E+02 0.0031 22.8 4.5 11 262-272 21-31 (84)
170 PF11812 DUF3333: Domain of un 27.0 80 0.0017 27.0 3.5 12 270-281 9-20 (155)
171 PF03100 CcmE: CcmE; InterPro 26.4 23 0.0005 29.3 0.1 6 271-276 3-8 (131)
172 PF10864 DUF2663: Protein of u 26.3 1.6E+02 0.0035 24.4 5.1 33 264-296 11-43 (130)
173 TIGR02120 GspF general secreti 26.3 2.1E+02 0.0045 28.1 6.9 42 216-257 112-153 (399)
174 PF05508 Ran-binding: RanGTP-b 26.3 2.4E+02 0.0053 26.8 6.9 79 13-97 64-142 (302)
175 COG5415 Predicted integral mem 26.2 1.9E+02 0.004 26.1 5.7 27 238-264 13-39 (251)
176 KOG3894|consensus 26.1 5.9E+02 0.013 24.4 11.3 82 206-287 212-304 (316)
177 PHA03049 IMV membrane protein; 26.1 89 0.0019 22.7 3.0 13 280-292 7-19 (68)
178 PF12325 TMF_TATA_bd: TATA ele 26.1 3.6E+02 0.0079 21.9 7.5 74 25-98 15-93 (120)
179 PF05961 Chordopox_A13L: Chord 25.9 90 0.0019 22.7 3.0 12 280-291 7-18 (68)
180 PRK13865 type IV secretion sys 25.8 2.5E+02 0.0053 25.6 6.7 10 271-280 34-43 (229)
181 KOG0809|consensus 25.7 5.9E+02 0.013 24.2 22.1 87 202-292 215-301 (305)
182 PF06785 UPF0242: Uncharacteri 25.6 6.3E+02 0.014 24.5 11.7 102 29-135 109-222 (401)
183 PHA03332 membrane glycoprotein 25.5 1E+03 0.022 27.0 12.1 90 33-139 891-987 (1328)
184 PF05478 Prominin: Prominin; 25.2 9.1E+02 0.02 26.3 23.2 42 218-259 356-398 (806)
185 PF14899 DUF4492: Domain of un 25.0 79 0.0017 22.8 2.6 18 287-304 27-45 (64)
186 COG3388 Predicted transcriptio 25.0 1.6E+02 0.0034 23.0 4.4 31 28-58 68-98 (101)
187 PTZ00478 Sec superfamily; Prov 25.0 2.1E+02 0.0045 21.7 5.0 53 243-295 14-66 (81)
188 PF00435 Spectrin: Spectrin re 24.9 2.8E+02 0.0061 20.3 8.9 32 28-59 36-67 (105)
189 PRK04778 septation ring format 24.7 8E+02 0.017 25.5 20.5 62 213-274 363-424 (569)
190 PF10805 DUF2730: Protein of u 24.6 3.5E+02 0.0076 21.3 7.2 21 37-57 39-59 (106)
191 PF10027 DUF2269: Predicted in 24.2 1.5E+02 0.0033 24.7 4.8 32 267-298 119-150 (150)
192 PF12751 Vac7: Vacuolar segreg 24.2 70 0.0015 31.4 3.0 19 277-295 298-316 (387)
193 PF01105 EMP24_GP25L: emp24/gp 23.9 26 0.00056 29.6 0.0 13 211-223 111-123 (183)
194 PF10510 PIG-S: Phosphatidylin 23.8 1.7E+02 0.0036 30.1 5.9 52 209-264 394-447 (517)
195 PF11945 WASH_WAHD: WAHD domai 23.8 3E+02 0.0066 26.1 7.1 33 225-257 35-67 (297)
196 PRK13159 cytochrome c-type bio 23.8 1E+02 0.0022 26.5 3.5 30 278-307 10-42 (155)
197 TIGR03090 SASP_tlp small, acid 23.0 1.7E+02 0.0036 21.6 4.0 27 240-266 8-34 (70)
198 PHA03046 Hypothetical protein; 22.9 4E+02 0.0086 22.1 6.6 46 212-257 84-129 (142)
199 PF07432 Hc1: Histone H1-like 22.3 4.1E+02 0.009 21.6 6.4 45 224-268 2-46 (123)
200 PF14914 LRRC37AB_C: LRRC37A/B 22.2 2.4E+02 0.0052 23.9 5.4 16 236-251 68-83 (154)
201 PHA02902 putative IMV membrane 22.2 1.5E+02 0.0033 21.4 3.6 24 279-302 7-30 (70)
202 PF13937 DUF4212: Domain of un 22.1 1.3E+02 0.0029 22.7 3.6 24 265-288 2-25 (81)
203 PRK15048 methyl-accepting chem 22.0 8.5E+02 0.018 24.8 23.2 55 206-260 432-486 (553)
204 PF15066 CAGE1: Cancer-associa 21.9 8.5E+02 0.019 24.8 11.1 35 112-146 409-443 (527)
205 PF07457 DUF1516: Protein of u 21.8 1.5E+02 0.0032 23.8 3.9 29 259-287 77-105 (110)
206 TIGR02956 TMAO_torS TMAO reduc 21.7 1.1E+03 0.023 25.8 12.3 26 74-99 74-99 (968)
207 PF02723 NS3_envE: Non-structu 21.7 94 0.002 23.6 2.6 13 288-300 29-41 (82)
208 PF06789 UPF0258: Uncharacteri 21.6 43 0.00093 28.5 0.8 17 259-275 115-131 (159)
209 PF12911 OppC_N: N-terminal TM 21.6 2.6E+02 0.0057 18.7 4.8 11 264-274 6-16 (56)
210 PF05377 FlaC_arch: Flagella a 21.6 2.9E+02 0.0064 19.3 5.9 25 205-229 21-45 (55)
211 TIGR00327 secE_euk_arch protei 21.5 2.1E+02 0.0044 20.5 4.2 46 250-295 4-49 (61)
212 KOG2546|consensus 21.3 2.7E+02 0.0058 27.9 6.3 78 208-285 51-133 (483)
213 PRK10573 type IV pilin biogene 21.2 2.7E+02 0.0058 27.3 6.5 40 216-256 314-353 (399)
214 PF06015 Chordopox_A30L: Chord 21.1 2.4E+02 0.0053 20.7 4.5 33 28-60 22-54 (71)
215 PF13779 DUF4175: Domain of un 21.0 1.1E+03 0.024 25.8 12.3 28 121-148 492-519 (820)
216 COG1315 Uncharacterized conser 20.9 6.2E+02 0.013 26.0 8.8 32 24-55 401-432 (543)
217 COG3352 FlaC Putative archaeal 20.9 5.3E+02 0.012 22.0 7.9 61 204-264 78-139 (157)
218 PF10661 EssA: WXG100 protein 20.6 1.6E+02 0.0035 24.8 4.2 8 238-245 80-87 (145)
219 PF04728 LPP: Lipoprotein leuc 20.6 3.1E+02 0.0068 19.2 6.6 30 240-269 17-46 (56)
220 PRK06007 fliF flagellar MS-rin 20.6 1.9E+02 0.0042 29.9 5.6 21 258-278 7-27 (542)
221 COG4068 Uncharacterized protei 20.6 2.6E+02 0.0057 19.8 4.4 18 267-284 34-51 (64)
222 PF10267 Tmemb_cc2: Predicted 20.5 8.5E+02 0.018 24.2 13.0 115 193-309 243-367 (395)
223 PRK10404 hypothetical protein; 20.4 4.3E+02 0.0094 20.8 10.8 36 241-276 39-82 (101)
224 PRK07193 fliF flagellar MS-rin 20.3 2.4E+02 0.0051 29.4 6.1 7 299-305 49-55 (552)
225 TIGR01149 mtrG N5-methyltetrah 20.3 3.6E+02 0.0078 19.8 6.8 13 242-254 21-33 (70)
226 PHA02849 putative transmembran 20.2 1E+02 0.0022 23.1 2.5 29 277-305 16-44 (82)
227 PF07544 Med9: RNA polymerase 20.2 2.1E+02 0.0046 21.5 4.4 28 208-235 55-82 (83)
228 PF00517 GP41: Retroviral enve 20.2 4.5E+02 0.0098 23.4 7.2 18 207-224 103-120 (204)
229 PHA03044 IMV membrane protein; 20.1 2.6E+02 0.0056 20.6 4.5 33 28-60 24-56 (74)
No 1
>KOG0809|consensus
Probab=100.00 E-value=4e-44 Score=323.42 Aligned_cols=251 Identities=42% Similarity=0.660 Sum_probs=219.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q psy2301 26 RAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYT 105 (350)
Q Consensus 26 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~ 105 (350)
++||.|.+.+++|+..+..++.++++|.+.|.|++ .|+|+|++..+.+|+.++.+|+++++.|++.|+.++...+...
T Consensus 54 ~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~- 131 (305)
T KOG0809|consen 54 GLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLS- 131 (305)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-
Confidence 57999999999999999999999999999999999 6999999988999999999999999999999999988765333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHHHhhhhcC
Q psy2301 106 SREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESS 185 (350)
Q Consensus 106 ~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~ 185 (350)
+.+.-+++|++..+..+++.++.+||..|..|.++++.+.++...+.....++ + +..+++.+.+.-
T Consensus 132 ~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~---~--------~~~dd~d~~~~~--- 197 (305)
T KOG0809|consen 132 PSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNT---V--------DLPDDEDFSDRT--- 197 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhcccc---c--------cCcchhhhhhhh---
Confidence 46788889999999999999999999999999999999988766654321111 1 111223332211
Q ss_pred CCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 186 RPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 186 ~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
++++|++.+ +++...+++|++||.++.+||.||++||+||+.||.+||.+||||||||+++..+++.|.++|.|
T Consensus 198 -----~qe~ql~~~-e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~K 271 (305)
T KOG0809|consen 198 -----FQEQQLMLF-ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHK 271 (305)
T ss_pred -----HHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHH
Confidence 256677766 56889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 266 AERYHRKNRKMACILCLASTTLILLILLILDKE 298 (350)
Q Consensus 266 A~~~qk~~rk~~~i~~li~iIiiiii~liv~k~ 298 (350)
|..|||+++|++|||+|+++||++++++|+.++
T Consensus 272 Ae~yQk~~~k~~~i~~L~l~ii~llvllilk~~ 304 (305)
T KOG0809|consen 272 AERYQKRNKKMKVILMLTLLIIALLVLLILKKL 304 (305)
T ss_pred HHHHHhcCCceEehHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999988887654
No 2
>KOG0810|consensus
Probab=100.00 E-value=8.2e-43 Score=324.34 Aligned_cols=254 Identities=26% Similarity=0.384 Sum_probs=218.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----
Q psy2301 26 RAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSS---- 101 (350)
Q Consensus 26 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~---- 101 (350)
..++.|+..+++|+..|..+...+++|.++|.+.+..+.. .++.+.+++.++.++.+..+.++.+|+.++....
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~--~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~ 110 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNA--DKELKRKLESLVDEIRRRARKIKTKLKALEKENEADET 110 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6799999999999999999999999999999988865433 3456789999999999999999999999987543
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHHHhh
Q psy2301 102 DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQ 181 (350)
Q Consensus 102 ~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~ 181 (350)
.+..+...++|+++...++++|.++|++|+.++..|++.+|.+++|++.+++++ ..+++.++++
T Consensus 111 ~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~----------------~~~de~ie~~ 174 (297)
T KOG0810|consen 111 QNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGE----------------ETTDEEIEEM 174 (297)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC----------------cCChHHHHHH
Confidence 123356789999999999999999999999999999999999999999988763 2345677777
Q ss_pred hhcCCCCccccHHHHHHh--hHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q psy2301 182 FESSRPGVSKTQQQLLLM--EEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQG 259 (350)
Q Consensus 182 ~~~~~~~~~~~qqql~~~--~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g 259 (350)
+++|++.+ |++..++.. ....+.++++||++|++||++|.|||+||.|||.||+.||+|||+||.||++|.+||++|
T Consensus 175 ie~g~~~~-f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g 253 (297)
T KOG0810|consen 175 IESGGSEV-FTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQG 253 (297)
T ss_pred HHCCChHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 77665543 454444311 156789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 260 YQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKE 298 (350)
Q Consensus 260 ~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv~k~ 298 (350)
..++++|.+|||++|||+|+|+++++|+++++++++.++
T Consensus 254 ~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~ 292 (297)
T KOG0810|consen 254 VDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVP 292 (297)
T ss_pred HHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhccc
Confidence 999999999999999999999988888877777766543
No 3
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.2e-32 Score=235.45 Aligned_cols=249 Identities=18% Similarity=0.283 Sum_probs=198.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q psy2301 29 PIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDE-STEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSR 107 (350)
Q Consensus 29 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d-~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~ 107 (350)
-.|..+...+++.++.+...++.+..+|++.|.. .++. ....+..++..+++++++-.+++..|+..+...-+
T Consensus 21 ~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~E-v~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ih----- 94 (280)
T COG5074 21 VTFMNKILSINKNLSVYEKEINQIDNLHKDLLTE-VFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIH----- 94 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 3466799999999999999999999999998864 2322 34567788999999999999999998888775322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhcccccc-ccccHHHHHhhh-hcC
Q psy2301 108 EKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLW-QENDNEMIDRQF-ESS 185 (350)
Q Consensus 108 e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ie~~~-~~~ 185 (350)
..-++.+-.+.+++|.++++.|+.++..|++..+++..||+.|..|+. ..+.+. ..+ +......+.+.+ .++
T Consensus 95 -l~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~A-TEdeve----~aInd~nG~qvfsqalL~an 168 (280)
T COG5074 95 -LANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEA-TEDEVE----AAINDVNGQQVFSQALLNAN 168 (280)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCcc-chHHHH----HHhcccchHHHHHHHHHhcC
Confidence 234567888999999999999999999999999999999999988751 111010 000 011122222221 111
Q ss_pred CCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 186 RPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 186 ~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
+ .++. +..+.++++||++|++||++|.||.++|+||+.||.+|.+++|-|+.|++++..||++|+.++.+
T Consensus 169 r-----~geA-----ktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~ 238 (280)
T COG5074 169 R-----RGEA-----KTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDK 238 (280)
T ss_pred c-----cchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHH
Confidence 1 1111 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2301 266 AERYHRKNRKMACILCLASTTLILLILLILDKES 299 (350)
Q Consensus 266 A~~~qk~~rk~~~i~~li~iIiiiii~liv~k~~ 299 (350)
|.+|.|++|+++|.|++||+|++++|+.+|+|..
T Consensus 239 AvksaRaaRkkki~c~gI~~iii~viv~vv~~v~ 272 (280)
T COG5074 239 AVKSARAARKKKIRCYGICFIIIIVIVVVVFKVV 272 (280)
T ss_pred HHHHHHHHHhcceehhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999999988888888776543
No 4
>KOG0811|consensus
Probab=99.97 E-value=1.2e-28 Score=225.86 Aligned_cols=247 Identities=23% Similarity=0.329 Sum_probs=191.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q psy2301 26 RAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYT 105 (350)
Q Consensus 26 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~ 105 (350)
..+..|...+.+|...|..+...+..|.+.+... ++..|...++++++.....+.+.++++...|+.+.....
T Consensus 14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~l---gt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~---- 86 (269)
T KOG0811|consen 14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSL---GTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL---- 86 (269)
T ss_pred CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHc---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 4466799999999999999999999999999885 456778888999999999999999999999999988755
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHHHhhhhcC
Q psy2301 106 SREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESS 185 (350)
Q Consensus 106 ~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~ 185 (350)
..+.+..+.+...|.+.|...+++|+.+|+...+..|. -.+.. ++ ..++.. +...+...+... .
T Consensus 87 ~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~-~~~a~---~s--~~s~~~--------~~~~~~~~~~~~--~ 150 (269)
T KOG0811|consen 87 ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKI-PMVAR---GS--QNSQQL--------DEESPRVDELSN--N 150 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-ccccc---cc--ccchhh--------hhhhhhhhhhhc--c
Confidence 35668889999999999999999999999988777651 11111 00 010000 111111111111 0
Q ss_pred CCCccccHH-HHHH--hh--HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 186 RPGVSKTQQ-QLLL--ME--EDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 186 ~~~~~~~qq-ql~~--~~--~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
... ..++ ++.. .+ ......+++|.++|.+||+.|.|||+||+||+.||++||++||.||+||++|..||++|+
T Consensus 151 ~~~--~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~ 228 (269)
T KOG0811|consen 151 GSQ--SQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGT 228 (269)
T ss_pred chh--hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHH
Confidence 000 0111 1111 11 346788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q psy2301 261 QQLAKAERYHRKNRKMACILCLASTTLILLILLILDK 297 (350)
Q Consensus 261 ~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv~k 297 (350)
++|.||.+|++++|+|+|+++++++++++++.++++.
T Consensus 229 ~~L~kA~~yq~~~~k~~~~ll~v~~~v~lii~l~i~~ 265 (269)
T KOG0811|consen 229 ENLRKAAKYQRKARKKKCILLLVGGPVGLIIGLIIAG 265 (269)
T ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888887777777666643
No 5
>KOG0812|consensus
Probab=99.97 E-value=2.2e-28 Score=220.12 Aligned_cols=262 Identities=17% Similarity=0.259 Sum_probs=202.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---
Q psy2301 25 SRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSS--- 101 (350)
Q Consensus 25 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~--- 101 (350)
.+.-.+|...++.|.+.|++...++++|..|.++ ++.|+|.. .+|.+++.-|++.+..++..|-++.....
T Consensus 37 ~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKr---ks~f~Dr~---VeI~eLT~iikqdi~sln~~i~~Lqei~~~~g 110 (311)
T KOG0812|consen 37 VSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKR---KSLFDDRP---VEIQELTFIIKQDITSLNSQIAQLQEIVKANG 110 (311)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccCcc---hhhHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 3344589999999999999999999999999998 47899987 48999999999999999998877765432
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcch--hhhhcc-ccccc---cccH
Q psy2301 102 DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQ--YMTSNL-MDLWQ---ENDN 175 (350)
Q Consensus 102 ~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~--~~~~~~-~~~~~---~~~~ 175 (350)
..++.+-..+.++++..|..++.++...|+++.....+.+|....|..++.....++.. ..+++. ..+|. +..+
T Consensus 111 n~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~ 190 (311)
T KOG0812|consen 111 NLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKD 190 (311)
T ss_pred cccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchh
Confidence 22212236788999999999999999999999999999999988888777543211100 011100 11111 1111
Q ss_pred HHHH--hhhhcCCCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHH
Q psy2301 176 EMID--RQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTE 253 (350)
Q Consensus 176 ~~ie--~~~~~~~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~ 253 (350)
+.-+ ..+..|.+... .++|++.+ +...+++++|.+++++||.+|.||.+||.+||+||.+|||++.|||+||+.+.
T Consensus 191 ~~sq~~~~ln~gd~~~~-qqqQm~ll-~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~ 268 (311)
T KOG0812|consen 191 EASQDVESLNMGDSSNP-QQQQMALL-DESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSD 268 (311)
T ss_pred hcccccccccccCCCCC-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 1000 11112222221 24555555 45579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy2301 254 IEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLI 294 (350)
Q Consensus 254 ~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~li 294 (350)
.|++.|+.+|.|..++-+++||++..+|++++||+++++++
T Consensus 269 lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 269 LNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVLF 309 (311)
T ss_pred hhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888877776665
No 6
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.8e-27 Score=213.86 Aligned_cols=248 Identities=23% Similarity=0.363 Sum_probs=174.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy2301 25 SRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAY 104 (350)
Q Consensus 25 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~ 104 (350)
+.++|.|...+..+...+..++.++..+.+-+.++.. |+|.|++..+++|++++..++..+..|.+.++..........
T Consensus 30 ~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~-p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~~ 108 (283)
T COG5325 30 DALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTE-PSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSSF 108 (283)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999875 889998877889999999999999999988876544321100
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCcchhhhhccccccccccHHHHHhhhh
Q psy2301 105 TSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDED-TPTDQYMTSNLMDLWQENDNEMIDRQFE 183 (350)
Q Consensus 105 ~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 183 (350)
.-.+.-+-.|.......+++.-...|++.+..|.+..+. .+.+ .++ +++.++.-.+.
T Consensus 109 ~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~--------~~~~~~~l------------~eee~e~~~~~-- 166 (283)
T COG5325 109 LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN--------KNNDQHPL------------EEEEDEESLSS-- 166 (283)
T ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHh--------cccccCch------------hhhhhhhhhhc--
Confidence 000111111233334445555555555555555544411 1111 111 11111111110
Q ss_pred cCCCCccccHHHHHHhh-HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q psy2301 184 SSRPGVSKTQQQLLLME-EDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQ 262 (350)
Q Consensus 184 ~~~~~~~~~qqql~~~~-~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~e 262 (350)
.+... .++++++..-+ +.....+.+|.++|.+|+++|.||++||.||+++|.+||+.|||||+|++++..|++.|++|
T Consensus 167 ~~sq~-~lqq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kE 245 (283)
T COG5325 167 LGSQQ-TLQQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKE 245 (283)
T ss_pred cchhh-HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHH
Confidence 11100 11222222110 23344589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q psy2301 263 LAKAERYHRKNRKMACILCLASTTLILLILLILD 296 (350)
Q Consensus 263 L~kA~~~qk~~rk~~~i~~li~iIiiiii~liv~ 296 (350)
|.||..|||+.+||..+++++++||.+++.+++.
T Consensus 246 L~kA~~hqrrt~k~~~~~Llil~vv~lfv~l~~k 279 (283)
T COG5325 246 LEKAPAHQRRTKKCRFYLLLILLVVLLFVSLIKK 279 (283)
T ss_pred HHHhHHHHhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888777776653
No 7
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.63 E-value=2.1e-14 Score=122.59 Aligned_cols=141 Identities=20% Similarity=0.308 Sum_probs=119.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CC
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSD---AY 104 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~---~~ 104 (350)
|+.|+..+++|+..|..|+..++.|+++|+..+..+ +.....+.+++.+..+++.+++.++..|+.|+..... ..
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~--~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~ 78 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAP--DADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALN 78 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 688999999999999999999999999999987532 2244678899999999999999999999999875431 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHHHhhhhc
Q psy2301 105 TSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFES 184 (350)
Q Consensus 105 ~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~ 184 (350)
++++.|++++++..|.++|++++++|+.+|..|++++|.++.|+.++++++ .+++.++.++++
T Consensus 79 ~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~-----------------~tdeei~~~~~~ 141 (151)
T cd00179 79 GSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGE-----------------ATDEELEDMLES 141 (151)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------------CChHHHHHHHHc
Confidence 356889999999999999999999999999999999999999999998764 245566666665
Q ss_pred CCC
Q psy2301 185 SRP 187 (350)
Q Consensus 185 ~~~ 187 (350)
|++
T Consensus 142 ~~~ 144 (151)
T cd00179 142 GNS 144 (151)
T ss_pred CCh
Confidence 543
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.57 E-value=2e-14 Score=104.47 Aligned_cols=63 Identities=37% Similarity=0.649 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 209 IRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHR 271 (350)
Q Consensus 209 eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk 271 (350)
+|+++|.+|+++|.+|++||.+|+.+|.+||++||+||.||+.|..++.+|.++|.+|.+++|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999999986
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.44 E-value=3.9e-13 Score=96.31 Aligned_cols=59 Identities=37% Similarity=0.620 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy2301 208 RIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKA 266 (350)
Q Consensus 208 ~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA 266 (350)
++|++++.+|+++|.+|++||.+|+.+|.+||++||+||+|++.+..+++.|.++|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999875
No 10
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.39 E-value=1.6e-11 Score=100.13 Aligned_cols=114 Identities=21% Similarity=0.340 Sum_probs=97.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CC
Q psy2301 27 AAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSD--AY 104 (350)
Q Consensus 27 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~--~~ 104 (350)
.++.|++.|++|+..|..|+..+..|+.+|.+.+..+ +.....+.+++.+..+++.+.+.++..|+.|+..... ..
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~ 79 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPP--DADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRAS 79 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccc
Confidence 4789999999999999999999999999999987532 2224567899999999999999999999999876431 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 105 TSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIK 142 (350)
Q Consensus 105 ~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k 142 (350)
++++.|++++++..|..+|+.++.+|+.+|..|++++|
T Consensus 80 ~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 80 GSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34678999999999999999999999999999998764
No 11
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.38 E-value=1.2e-11 Score=98.25 Aligned_cols=98 Identities=23% Similarity=0.444 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCC
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQS----SDA 103 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~----~~~ 103 (350)
||.|++.+++|+..|..|+.++++|..+|++.+..+. +| +..+.+|+.++.+|+++++.|+..|+.|+... ..+
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~-~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~ 79 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD-QD-SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 7999999999999999999999999999999986433 33 56788999999999999999999999998872 334
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q psy2301 104 YTSREKRLAYNVISSLVTNLQQKS 127 (350)
Q Consensus 104 ~~~~e~rir~n~~~~L~~kl~~i~ 127 (350)
.++.+.|+++|++.+|+.+|+++|
T Consensus 80 ~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 80 PSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHC
Confidence 456899999999999999999886
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.33 E-value=7.3e-12 Score=91.31 Aligned_cols=63 Identities=32% Similarity=0.535 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy2301 204 AAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKA 266 (350)
Q Consensus 204 ~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA 266 (350)
...+++|++++.+|+++|.++++||.+|+.+|.+||++||+|++|++.+..+++.|.++|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999999999999999999999875
No 13
>KOG3202|consensus
Probab=99.27 E-value=6.3e-09 Score=94.12 Aligned_cols=213 Identities=19% Similarity=0.239 Sum_probs=136.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcC
Q psy2301 26 RAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFN----GCHQLIQKIKHQSS 101 (350)
Q Consensus 26 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~----~i~~~I~~l~~~~~ 101 (350)
+.++.|+....++.+....++..+.+...+.+.. . .+...++..+.+.+. .+...+--+.+.+.
T Consensus 3 ~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~-----~-------~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~ 70 (235)
T KOG3202|consen 3 SSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDT-----G-------SDAEELTSVLRRSIEEDLEDLDELISILERNPS 70 (235)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----c-------chhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcc
Confidence 4567899999999999999999999988887661 1 133344444443333 33333333333333
Q ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHHHh
Q psy2301 102 -DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDR 180 (350)
Q Consensus 102 -~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 180 (350)
.+....|.+-|+..+..+..++.++-..|.. ..+... .-|. -...++ .+ + ...+....
T Consensus 71 ~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~-~l~~~~--~~-------~-----~~~~~~~~ 129 (235)
T KOG3202|consen 71 KFGIDEFELSRRRRFIDNLRTQLRQMKSKMAM--SGFANS----NIRD-ILLGPE--KS-------P-----NLDEAMSR 129 (235)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccc----cchh-hhcCCC--CC-------C-----chhhhHHH
Confidence 2334568889999999999999988888877 111111 0011 011111 00 0 00011111
Q ss_pred hhhcCCCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 181 QFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 181 ~~~~~~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
.. +...+ + ... ......+++.++.+..|+++|.-++++-..|+.-+++||.+||+.++-++.++..+..+.
T Consensus 130 ~~--~~D~v---~-~~~---~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~ 200 (235)
T KOG3202|consen 130 AS--GLDNV---Q-EIV---QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVM 200 (235)
T ss_pred hh--ccCcH---H-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 0 000 112356788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchhHHHH
Q psy2301 261 QQLAKAERYHRKNRKMACIL 280 (350)
Q Consensus 261 ~eL~kA~~~qk~~rk~~~i~ 280 (350)
+.|.+-.+.+++.+.||.++
T Consensus 201 ~~l~~v~~~~s~~~~~~~il 220 (235)
T KOG3202|consen 201 KRLAKVNRMASQCSQWCAIL 220 (235)
T ss_pred HHHHHHHHHhccccchhHHH
Confidence 99999999444444333333
No 14
>KOG3894|consensus
Probab=98.80 E-value=3.5e-06 Score=78.32 Aligned_cols=94 Identities=22% Similarity=0.256 Sum_probs=77.5
Q ss_pred cHHHHHHhhH---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy2301 192 TQQQLLLMEE---DNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAER 268 (350)
Q Consensus 192 ~qqql~~~~~---~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~ 268 (350)
++.++++++. .-.....+-.+++++||+.+.|+..|-.-++.-|-+|..-||.|=+++.+|..|++.|+++|.||.+
T Consensus 209 s~e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~ 288 (316)
T KOG3894|consen 209 SKEQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKR 288 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence 4444444432 2235556677999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccchhHHHHHHHHH
Q psy2301 269 YHRKNRKMACILCLAST 285 (350)
Q Consensus 269 ~qk~~rk~~~i~~li~i 285 (350)
...+.|+|..++++|+-
T Consensus 289 ~~~~~r~~~lf~llvls 305 (316)
T KOG3894|consen 289 NNGGLRVFLLFFLLVLS 305 (316)
T ss_pred hcccchhHHHHHHHHHH
Confidence 98888876665554443
No 15
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.51 E-value=5.7e-06 Score=65.72 Aligned_cols=100 Identities=23% Similarity=0.296 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy2301 38 TQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVIS 117 (350)
Q Consensus 38 i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir~n~~~ 117 (350)
|...|..|+..+..|+++.+.. ++..|...++.+|..+...++.+++.+...|+.+..... .....+..+.+..
T Consensus 1 is~~l~~in~~v~~l~k~~~~l---Gt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~---~~~~~~~~k~~~~ 74 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQL---GTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSS---DRSNDRQQKLQRE 74 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH-------HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHh---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHH
Confidence 4677889999999999999886 356889999999999999999999999999999988621 1245567778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 118 SLVTNLQQKSIQFRSMQSSYLNKIKT 143 (350)
Q Consensus 118 ~L~~kl~~i~~~fq~~q~~~~~~~k~ 143 (350)
.|...|+.++++|++.|+.|.++.+.
T Consensus 75 KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 75 KLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999987664
No 16
>KOG0810|consensus
Probab=98.05 E-value=0.0017 Score=61.33 Aligned_cols=206 Identities=13% Similarity=0.176 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2301 73 TKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAY-NVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMY 151 (350)
Q Consensus 73 ~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir~-n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~ 151 (350)
..+......|+..++.+.+.....+.....+....-.+.+. ..-+.|.....+--....+....|+.+++++..-...-
T Consensus 85 ~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~ 164 (297)
T KOG0810|consen 85 DEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGE 164 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Confidence 46777888888888888888888776433222222222222 22233433333333344444446677777666544441
Q ss_pred cCCCCCcchhhhhccccccccccHHHH-HhhhhcCCCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2301 152 FDEDTPTDQYMTSNLMDLWQENDNEMI-DRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKD 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-e~~~~~~~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~d 230 (350)
...+..+.+ +.+ .+..+.+ ...+. +. + ..++.+..+ +...++++.=++.|.+|++--.+++.|-..
T Consensus 165 ~~~de~ie~-~ie-------~g~~~~f~~~~i~-~~-~--~~~~~l~Ei-q~Rh~~ik~LEksi~ELhqlFlDMa~LVe~ 231 (297)
T KOG0810|consen 165 ETTDEEIEE-MIE-------SGGSEVFTQKAIQ-DR-G--QAKQTLAEI-QERHDEIKKLEKSIRELHQLFLDMAVLVES 231 (297)
T ss_pred cCChHHHHH-HHH-------CCChHHHHHHHHH-Hh-h--hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122111111 111 1122222 22231 10 0 022333333 345567777788888888888888888888
Q ss_pred HHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 231 LSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 231 La~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv 295 (350)
=+.||..=..-|.+=..+|+.+.+++++|. +..+..+++.+++|+|++++++++++++...
T Consensus 232 QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv----~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~ 292 (297)
T KOG0810|consen 232 QGEMVDRIENNVENAVDYVEQGVDHLKKAV----KYQKKARKWKIIIIIILIIIIVVLVVVIVVP 292 (297)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhceeeeehHHHHHHHHHhhhhccc
Confidence 888888888888888888888888888884 4445555666666666666666665555443
No 17
>KOG3385|consensus
Probab=97.76 E-value=0.00022 Score=56.86 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy2301 209 IRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLAST 285 (350)
Q Consensus 209 eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~i 285 (350)
|-++.+..+.+-|.-|..+--+++.-|..|..++|.+|+..+.+..-+.+.-..++.-.+. ++++.+||.++.++
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~l 107 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSL 107 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 3346677788888888999999999999999999999999999999999999999877766 88888887765543
No 18
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.029 Score=50.43 Aligned_cols=85 Identities=12% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHH
Q psy2301 211 SQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYH----RKNRKMACILCLASTT 286 (350)
Q Consensus 211 ~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~q----k~~rk~~~i~~li~iI 286 (350)
-.|++.=.+.|.-|-.+..||..|..+=.+++..=+.||+....++..|..+...+..+- |++|+-...=+.|..|
T Consensus 177 L~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI 256 (280)
T COG5074 177 LAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGI 256 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhh
Confidence 344444455555555555555555555555555555555555555555555555544432 4444444444444444
Q ss_pred HHHHHHHHH
Q psy2301 287 LILLILLIL 295 (350)
Q Consensus 287 iiiii~liv 295 (350)
.++||++++
T Consensus 257 ~~iii~viv 265 (280)
T COG5074 257 CFIIIIVIV 265 (280)
T ss_pred HHHHHHHHH
Confidence 444444444
No 19
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.37 E-value=0.0053 Score=47.43 Aligned_cols=49 Identities=12% Similarity=0.291 Sum_probs=38.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
+.+.++...+.|+.++..+=-..+.+-|+-|+.++.+.+.-....+.=.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~ 51 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHH
Confidence 4577888899999998888888888999999999987766655544333
No 20
>KOG0860|consensus
Probab=96.90 E-value=0.028 Score=45.21 Aligned_cols=40 Identities=13% Similarity=0.346 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVER 251 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~ 251 (350)
+.+++.+..+.|+-+|+++=-.=|-|-|+-||.+++-.++
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~ 68 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQ 68 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHH
Confidence 4556677778888888888888888999999988876554
No 21
>KOG1666|consensus
Probab=96.50 E-value=0.56 Score=41.80 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=46.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2301 211 SQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKN 273 (350)
Q Consensus 211 ~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~ 273 (350)
.+-|+.=.+-..|--+|=.+|-.=++.|-+.|.|=-.-.-++.+|+.++.+-|..-.+..-++
T Consensus 134 t~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~n 196 (220)
T KOG1666|consen 134 TDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRN 196 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHH
Confidence 345555556667777788888888899999999888888888888888888776554444333
No 22
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.38 E-value=0.07 Score=49.40 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=40.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKA 266 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA 266 (350)
+++-.+.+++.+=.. .++..+.+-..+||+.+..++.....++.+...|.+.
T Consensus 170 ~em~~La~~LK~~s~---~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 170 EEMLSLARQLKENSL---AFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444 4577899999999999999999999999999988664
No 23
>KOG0811|consensus
Probab=96.28 E-value=0.99 Score=42.15 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=72.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q psy2301 201 EDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACIL 280 (350)
Q Consensus 201 ~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~ 280 (350)
+...+.+++=+.+|..+..-..+|..|-++=+.+|..=.+-|++-..||+++..++.+|.+.=.++.+. ..+..++
T Consensus 176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~----~~~ll~v 251 (269)
T KOG0811|consen 176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK----KCILLLV 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----hhhhhHH
Confidence 445677888889999999999999999999999999999999999999999999999998775544433 3665554
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2301 281 CLASTTLILLILLILD 296 (350)
Q Consensus 281 ~li~iIiiiii~liv~ 296 (350)
+++++.+++++++.+.
T Consensus 252 ~~~v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 252 GGPVGLIIGLIIAGIA 267 (269)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555555555554443
No 24
>KOG3065|consensus
Probab=94.76 E-value=0.11 Score=48.43 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 209 IRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 209 eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
+-++.+.+|-..+..|..|-.+|+..|+.|.+.||+|+++++.....|.++++.+.+
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 455778888999999999999999999999999999999999999999999987754
No 25
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=93.61 E-value=2.4 Score=32.80 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q psy2301 233 HMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDK 297 (350)
Q Consensus 233 ~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv~k 297 (350)
..+.+|.+.+....+-......-+..+.+=+.+..+..+.-|++.|..| .+|++.+++|+++
T Consensus 29 ~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~---~~f~~~v~yI~~r 90 (92)
T PF03908_consen 29 QTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAF---LFFLLVVLYILWR 90 (92)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhh
Confidence 3445677777777777777777888888888777777777665555443 3445555566554
No 26
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.15 E-value=7.3 Score=36.25 Aligned_cols=90 Identities=13% Similarity=0.199 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNR---KMACILCL 282 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~r---k~~~i~~l 282 (350)
.......=+.+-.+.|..|+.=-.||+.+..+=|.+|..=-.-|+....|++.-..+++-|.+--.++- |..-.|-.
T Consensus 182 e~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~ 261 (283)
T COG5325 182 ELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRF 261 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchh
Confidence 333333336777788888888888888888888888888888888888888888888888887654432 33334444
Q ss_pred HHHHHHHHHHHHH
Q psy2301 283 ASTTLILLILLIL 295 (350)
Q Consensus 283 i~iIiiiii~liv 295 (350)
+++++++++++++
T Consensus 262 ~~Llil~vv~lfv 274 (283)
T COG5325 262 YLLLILLVVLLFV 274 (283)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444444
No 27
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=92.43 E-value=2.5 Score=39.08 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=36.7
Q ss_pred HHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhhhhhHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy2301 206 QARIRSQEVD-HIVKSIVDLNHLFKDLSHMVVHQGTILDR----IDYNVERTEIEVKQGYQQLAKAERYHRKNRK 275 (350)
Q Consensus 206 ~i~eR~~eI~-~IE~sI~EL~~iF~dLa~LV~eQge~IDr----Id~Nve~a~~~v~~g~~eL~kA~~~qk~~rk 275 (350)
.+-++|+.++ +|...|..|..-.++=+... +..|.. ++.-.+.+..|..+-..+=.+..+|.+++.+
T Consensus 156 ~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~ 227 (251)
T PF09753_consen 156 KILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG 227 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334455444 67777777776666655543 333333 4444445555555555555566666665555
No 28
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=91.93 E-value=2.1 Score=33.48 Aligned_cols=88 Identities=14% Similarity=0.249 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C--
Q psy2301 29 PIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSS----D-- 102 (350)
Q Consensus 29 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~----~-- 102 (350)
+.|+...+++...|..++........+.... . ...++..+..++...+..++..|..|+.... +
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~----~------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~ 70 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDT----S------SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPS 70 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHC----C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccC----C------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4699999999999999988888877765431 1 1246777888888888888888888776532 1
Q ss_pred --CCchHHHHHHHHHHHHHHHHHHHH
Q psy2301 103 --AYTSREKRLAYNVISSLVTNLQQK 126 (350)
Q Consensus 103 --~~~~~e~rir~n~~~~L~~kl~~i 126 (350)
+-+..+..-|+..+..+..++.++
T Consensus 71 kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 71 KFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 222455666666676666666543
No 29
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=91.69 E-value=4.8 Score=30.73 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy2301 203 NAAQARIRSQEVDHIVKSI 221 (350)
Q Consensus 203 ~~~~i~eR~~eI~~IE~sI 221 (350)
+.+.+-+|.+.+..|+..-
T Consensus 22 Ni~~ll~Rge~L~~L~~kt 40 (89)
T PF00957_consen 22 NIDKLLERGEKLEELEDKT 40 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHH
Confidence 4445555555555554433
No 30
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=90.81 E-value=6.4 Score=30.51 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=51.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNR-KMACILCLASTTLILL 290 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~r-k~~~i~~li~iIiiii 290 (350)
..|.+||..-..+..=+.++..=++.|..+-+..|.+++..... ..-.++.+ .+..|.-| .++|++-+++.|+..+
T Consensus 11 ~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k--~~n~Knir~~KmwilGlvgTi~gsl 87 (98)
T PF11166_consen 11 WRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENK--KKNDKNIRDIKMWILGLVGTIFGSL 87 (98)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777778889999999999999985443 22222222 22334444 4566666677666555
Q ss_pred HHHH
Q psy2301 291 ILLI 294 (350)
Q Consensus 291 i~li 294 (350)
|+.+
T Consensus 88 iia~ 91 (98)
T PF11166_consen 88 IIAL 91 (98)
T ss_pred HHHH
Confidence 4444
No 31
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=89.02 E-value=0.81 Score=32.51 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=11.7
Q ss_pred HHHHHhccchhHHHHHHHHHHH
Q psy2301 266 AERYHRKNRKMACILCLASTTL 287 (350)
Q Consensus 266 A~~~qk~~rk~~~i~~li~iIi 287 (350)
..+.|++.++..+++++++++|
T Consensus 28 ~~k~qk~~~~~~~i~~~~~i~~ 49 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGIFILF 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566665555443
No 32
>PF14992 TMCO5: TMCO5 family
Probab=88.92 E-value=20 Score=33.57 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 204 AAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 204 ~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
...+....++|.+++....+++++=.|=+.-+..=.+.+.+||.-.+...-+.+-+.
T Consensus 122 ~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k 178 (280)
T PF14992_consen 122 LESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSK 178 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788999999999999999999888888888888999997777766644333
No 33
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=87.11 E-value=50 Score=35.95 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERY 269 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~ 269 (350)
.-+..+.+.+.++..-+.+.+.-+-.+ +...+..-..++...+........++..|
T Consensus 357 ~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y 412 (806)
T PF05478_consen 357 DVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY 412 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 344566666667777777777777666 55666666677777777777777777666
No 34
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=86.22 E-value=26 Score=31.78 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 249 VERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 249 ve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv 295 (350)
+-...+..++..+++++|.+.-+++-++.+..| +.++++++++++
T Consensus 122 i~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi--~aml~Vf~LF~l 166 (230)
T PF03904_consen 122 IKKVREENKSMLQEVKQSHEKYQKRQKSMYKGI--GAMLFVFMLFAL 166 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 334445555666666666666555555555443 333333333333
No 35
>KOG3251|consensus
Probab=85.96 E-value=26 Score=31.53 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=29.6
Q ss_pred HhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q psy2301 235 VVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACIL 280 (350)
Q Consensus 235 V~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~ 280 (350)
+.+|+..|-.+-.-+-+...-+.-.+.-|.--.++.+.-++..|+.
T Consensus 152 l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G 197 (213)
T KOG3251|consen 152 LVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGG 197 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHH
Confidence 4567777777777777666666666666666666666555544443
No 36
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=84.69 E-value=12 Score=26.68 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAER 268 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~ 268 (350)
-+.+-.+.+.|..++-.+...-+..|++.|.++...+.++..++..++.-|.+-.+
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 45566677778888888899999999999999999999999999999998876554
No 37
>KOG0964|consensus
Probab=84.21 E-value=71 Score=35.14 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHH-----------HHHHHHHHHHhhhhhHH---HHHHhhHHHHHHHHHHHHHHHHHH
Q psy2301 201 EDNAAQARIRSQEVDHIVKSIVDLN-----------HLFKDLSHMVVHQGTIL---DRIDYNVERTEIEVKQGYQQLAKA 266 (350)
Q Consensus 201 ~~~~~~i~eR~~eI~~IE~sI~EL~-----------~iF~dLa~LV~eQge~I---DrId~Nve~a~~~v~~g~~eL~kA 266 (350)
.....+..++.++|++|+.+|.|.. ++=+++..+...+.+.- ..+-.-+++..++++++.++|..+
T Consensus 421 ~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 421 EDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445778899999999999999443 33344444444443321 123344555556666666666555
Q ss_pred HH
Q psy2301 267 ER 268 (350)
Q Consensus 267 ~~ 268 (350)
-.
T Consensus 501 ~~ 502 (1200)
T KOG0964|consen 501 MN 502 (1200)
T ss_pred cc
Confidence 43
No 38
>KOG0860|consensus
Probab=84.02 E-value=6.4 Score=31.85 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhHH
Q psy2301 201 EDNAAQARIRSQEVDHIVKSIV 222 (350)
Q Consensus 201 ~~~~~~i~eR~~eI~~IE~sI~ 222 (350)
..+.+-+-||.+.+..|+.--.
T Consensus 46 r~NV~KVlER~ekL~~L~drad 67 (116)
T KOG0860|consen 46 RENVEKVLERGEKLDELDDRAD 67 (116)
T ss_pred HHhHHHHHHhcchHHHHHHHHH
Confidence 3455666677766666554443
No 39
>KOG3202|consensus
Probab=81.65 E-value=7 Score=35.78 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=16.2
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 267 ERYHRKNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 267 ~~~qk~~rk~~~i~~li~iIiiiii~liv 295 (350)
.+--+.+..|-|||.+++++.+++++++|
T Consensus 204 ~~v~~~~s~~~~~~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 204 AKVNRMASQCSQWCAILLLVGLLLLVVII 232 (235)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 33344444566777766665555555554
No 40
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=80.82 E-value=20 Score=26.29 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=21.7
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy2301 238 QGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLAS 284 (350)
Q Consensus 238 Qge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~ 284 (350)
..+-++.+|.+-+.....+.....+|.+ -+++.+|.|-+++..
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~----I~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEK----IKSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444555555555555554544555443 445555665554444
No 41
>PRK14710 hypothetical protein; Provisional
Probab=79.78 E-value=2.1 Score=31.27 Aligned_cols=6 Identities=33% Similarity=0.611 Sum_probs=2.6
Q ss_pred cccccc
Q psy2301 299 SLFTYR 304 (350)
Q Consensus 299 ~~~~~~ 304 (350)
|..|||
T Consensus 25 cv~tyl 30 (86)
T PRK14710 25 CVITYL 30 (86)
T ss_pred HHhhhe
Confidence 444443
No 42
>KOG2678|consensus
Probab=78.64 E-value=38 Score=30.62 Aligned_cols=34 Identities=6% Similarity=0.144 Sum_probs=17.5
Q ss_pred HHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy2301 234 MVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAE 267 (350)
Q Consensus 234 LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~ 267 (350)
-+.+=..++-.-+--++.....+.-+..-+.+..
T Consensus 177 alkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ 210 (244)
T KOG2678|consen 177 ALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYD 210 (244)
T ss_pred HHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 3444445555555555555555555555554433
No 43
>PHA02844 putative transmembrane protein; Provisional
Probab=78.50 E-value=2.4 Score=31.24 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy2301 275 KMACILCLASTTLILLILLI 294 (350)
Q Consensus 275 k~~~i~~li~iIiiiii~li 294 (350)
|+.|+++++.+++++++.+.
T Consensus 48 ~~~~ii~i~~v~~~~~~~fl 67 (75)
T PHA02844 48 TKIWILTIIFVVFATFLTFL 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344333333333333333
No 44
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.30 E-value=93 Score=32.63 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q psy2301 210 RSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDY 247 (350)
Q Consensus 210 R~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~ 247 (350)
+++..++.-+.+..||+.|.+|-..|.+=|...-.|.+
T Consensus 545 kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEird 582 (594)
T PF05667_consen 545 KDEAARKAYKLLASLHENCSQLIETVEETGTISREIRD 582 (594)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77889999999999999999999999999988776654
No 45
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=77.00 E-value=20 Score=24.36 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=44.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2301 216 HIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRK 272 (350)
Q Consensus 216 ~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~ 272 (350)
+-.+.+..|.....++..|..+=|.+|..=..-++....++..+...+.+|.+.-++
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677788888888888888888888887778888888888888888887776543
No 46
>KOG3065|consensus
Probab=76.31 E-value=21 Score=33.45 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=40.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 215 DHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 215 ~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
.+.-..+.|-...-..-..+..+||+.|++|+.|++........|.++|..
T Consensus 82 ~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~ 132 (273)
T KOG3065|consen 82 RRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE 132 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH
Confidence 344444555566666778899999999999999999999999999888853
No 47
>PF04886 PT: PT repeat; InterPro: IPR006970 This short repeat is composed on the tetrapeptide XPTX. This repeat is found in a variety of proteins, however it is not clear if these repeats are homologous to each other.
Probab=72.23 E-value=3.3 Score=26.27 Aligned_cols=25 Identities=28% Similarity=0.142 Sum_probs=9.7
Q ss_pred cccccccccccccccCccccccccc
Q psy2301 314 TGLFTYRPIYLQAYLPTGLFTYRPI 338 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (350)
+.-||.-||.-|+--||.-|+--||
T Consensus 7 T~~PT~~PT~~Pt~~PT~~Pt~~PT 31 (36)
T PF04886_consen 7 TNQPTNQPTGQPTDQPTDQPTDQPT 31 (36)
T ss_pred ccCCCCCCCCCCCcCCcCCCcCCcc
Confidence 3333333333333333333333333
No 48
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=72.19 E-value=42 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHH
Q psy2301 261 QQLAKAERYHRKNRKMACILCLASTTLI 288 (350)
Q Consensus 261 ~eL~kA~~~qk~~rk~~~i~~li~iIii 288 (350)
+.+.+....=|--=+....+|+++|+.|
T Consensus 60 ~~l~r~~~~D~~li~~~~~~f~~~v~yI 87 (92)
T PF03908_consen 60 KKLERRDKTDRILIFFAFLFFLLVVLYI 87 (92)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555554443
No 49
>PHA02650 hypothetical protein; Provisional
Probab=70.87 E-value=5.2 Score=29.90 Aligned_cols=9 Identities=22% Similarity=0.194 Sum_probs=3.2
Q ss_pred HHHHHHHHh
Q psy2301 289 LLILLILDK 297 (350)
Q Consensus 289 iii~liv~k 297 (350)
+++.+..+|
T Consensus 63 ~l~~flYLK 71 (81)
T PHA02650 63 ALFSFFVFK 71 (81)
T ss_pred HHHHHHHHH
Confidence 333333333
No 50
>KOG1666|consensus
Probab=70.60 E-value=15 Score=33.00 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHHHHHH
Q psy2301 247 YNVERTEIEVKQGYQQLAKAERYHRKNR----KMACILCLASTTLILLILLI 294 (350)
Q Consensus 247 ~Nve~a~~~v~~g~~eL~kA~~~qk~~r----k~~~i~~li~iIiiiii~li 294 (350)
+.++.|.+-+-....+|.|+.+--++-. +.+|.+.+++++++++|+++
T Consensus 163 e~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~i 214 (220)
T KOG1666|consen 163 EQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLI 214 (220)
T ss_pred HHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888766533 33555554444444443333
No 51
>PHA02975 hypothetical protein; Provisional
Probab=70.06 E-value=7 Score=28.42 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHHH
Q psy2301 275 KMACILCLASTTLILL 290 (350)
Q Consensus 275 k~~~i~~li~iIiiii 290 (350)
|+.++++++.++++++
T Consensus 44 ~~~~ii~i~~v~~~~~ 59 (69)
T PHA02975 44 SIILIIFIIFITCIAV 59 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344443333333333
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.69 E-value=84 Score=28.19 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHhccchhHHHHHHHHHHHHHHHHHH
Q psy2301 224 LNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAE---RYHRKNRKMACILCLASTTLILLILLI 294 (350)
Q Consensus 224 L~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~---~~qk~~rk~~~i~~li~iIiiiii~li 294 (350)
.++--.+|..-+.+-...+..++..-......++.+..++..+. ...+....+.|++...+|+++-+++-+
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGl 189 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 34555566666666666677677777777777777777664432 334444566777766666665444333
No 53
>PRK14710 hypothetical protein; Provisional
Probab=68.62 E-value=3.9 Score=29.84 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=11.6
Q ss_pred cchhhhhhcccccccccccccccc
Q psy2301 303 YRPIYLQAYLPTGLFTYRPIYLQA 326 (350)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~ 326 (350)
|.|-|+..-=..+.-|+||.+.|.
T Consensus 42 ~y~nY~AIPE~~Gv~TWLP~FFP~ 65 (86)
T PRK14710 42 HYINYMAIPENDGVFTWLPDFFPH 65 (86)
T ss_pred hccceeeccccCCcEEeccccCCc
Confidence 334444333344555666665553
No 54
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=67.97 E-value=4 Score=30.06 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy2301 278 CILCLASTTLILL 290 (350)
Q Consensus 278 ~i~~li~iIiiii 290 (350)
|+++++.++++++
T Consensus 48 ~~~~ii~ii~v~i 60 (72)
T PF12575_consen 48 WIILIISIIFVLI 60 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3443444333333
No 55
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=67.25 E-value=4.7 Score=30.57 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q psy2301 254 IEVKQGYQQLAKAERYHRKNRKMACILCLASTTL 287 (350)
Q Consensus 254 ~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIi 287 (350)
.+-.....+...|+++.+++|++.++-+++++++
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~ 77 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKWSIIAIIIGIVI 77 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344455678889999888888877765555443
No 56
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=66.65 E-value=18 Score=25.69 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q psy2301 259 GYQQLAKAERYHRKNRKMACILCLASTTLILL 290 (350)
Q Consensus 259 g~~eL~kA~~~qk~~rk~~~i~~li~iIiiii 290 (350)
-.++..+.++..++.++..+.++++++++.++
T Consensus 24 C~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 24 CREEYRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777766666665555444
No 57
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=66.59 E-value=9.3 Score=38.86 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=25.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchh
Q psy2301 240 TILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKM 276 (350)
Q Consensus 240 e~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~ 276 (350)
..+| |..+..++...+++|...|+++.+.-.+..++
T Consensus 432 ~PlD-IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~ 467 (490)
T PF00523_consen 432 DPLD-ISSELGQVNNSLNNAKDLLDKSNQILDSVNPG 467 (490)
T ss_dssp SHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566 77777888888888888888888877665544
No 58
>KOG0859|consensus
Probab=65.18 E-value=15 Score=32.63 Aligned_cols=58 Identities=14% Similarity=0.292 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRK 272 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~ 272 (350)
..+.++...|.|+..++.+==.-|-+-||- ||-=|+.|.+=..++..--+++++..++
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGek---iELLVdKTenl~~~s~~fr~q~r~~~r~ 182 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEK---IELLVDKTENLRSKSFDFRTQGRKLRRK 182 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCe---EEeeechhhhhhhhhHHHHHHHHHHHHH
Confidence 455666777777777766666666666653 3333444444344444444444444443
No 59
>PRK04325 hypothetical protein; Provisional
Probab=64.21 E-value=57 Score=24.18 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=36.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q psy2301 214 VDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQG 259 (350)
Q Consensus 214 I~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g 259 (350)
|.+||..+.-.-..-.+|+..|.+|...||+....+..-...++..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777788888889999999998888877776666543
No 60
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=63.57 E-value=40 Score=23.77 Aligned_cols=44 Identities=11% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEV 256 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v 256 (350)
+++.++.-+..|-..|.....==..+++.++|+|.++|..-.++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46778888888888898888889999999999999998876654
No 61
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=62.92 E-value=8.8 Score=34.72 Aligned_cols=12 Identities=0% Similarity=0.238 Sum_probs=5.1
Q ss_pred HHHhccchhHHH
Q psy2301 268 RYHRKNRKMACI 279 (350)
Q Consensus 268 ~~qk~~rk~~~i 279 (350)
+++|++|..+++
T Consensus 5 ~r~KrRK~N~iL 16 (217)
T PF07423_consen 5 QRQKRRKTNKIL 16 (217)
T ss_pred HHHHhhhhhhhH
Confidence 344444444444
No 62
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=62.14 E-value=8.1 Score=34.97 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=16.0
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy2301 269 YHRKNRKMACILCLASTTLILLILLILDKESLF 301 (350)
Q Consensus 269 ~qk~~rk~~~i~~li~iIiiiii~liv~k~~~~ 301 (350)
.+++.++.+.-.+|-+.|.+++++++|+.+.+|
T Consensus 3 f~~r~KrRK~N~iLNiaI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 3 FQQRQKRRKTNKILNIAIGIVSLLIIIVAYQLF 35 (217)
T ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhe
Confidence 344444555555555555444444444444443
No 63
>KOG3850|consensus
Probab=61.67 E-value=1.7e+02 Score=28.81 Aligned_cols=20 Identities=10% Similarity=0.356 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2301 78 LTQEISRMFNGCHQLIQKIK 97 (350)
Q Consensus 78 l~~~I~~~~~~i~~~I~~l~ 97 (350)
.+..+.+.+.+++++|+.++
T Consensus 99 tiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 99 TIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556667777888888877
No 64
>KOG2678|consensus
Probab=61.65 E-value=98 Score=28.10 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=25.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 216 HIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYH 270 (350)
Q Consensus 216 ~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~q 270 (350)
+|..++.-|+.-|+..+. .- |..|+.=-.-+..+..-+.....-|..+...-
T Consensus 155 eLaesll~LArslKtnal--Af-qsalkeDnQvl~~~~k~~D~N~~~L~~~Serv 206 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNAL--AF-QSALKEDNQVLGAAEKGIDVNSQGLMDVSERV 206 (244)
T ss_pred HHHHHHHHHHHHHHHhHH--HH-HHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHH
Confidence 455555555555555432 22 44444333334455555555666665554443
No 65
>KOG3208|consensus
Probab=60.98 E-value=1.3e+02 Score=27.27 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q psy2301 227 LFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMAC 278 (350)
Q Consensus 227 iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~ 278 (350)
+-..=-.-.+.|+.++-.|-.-+.++....=. ..+|....+.+|+.--+++
T Consensus 164 ~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~-IN~Ll~kIk~kkrrdslIL 214 (231)
T KOG3208|consen 164 QAQATRENLHSQRSVLGGINNKVNNIANRFPA-INQLLQKIKIKKRRDSLIL 214 (231)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcch-HHHHHHHHHHHhhhhhHHH
Confidence 33333344578999999999888888777654 4455555554444434333
No 66
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.53 E-value=49 Score=24.07 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
+.|.+||..+.-.-....+|+..|..|...||+....+..-...++...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777777777777888888899999999999888888777776654
No 67
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.85 E-value=68 Score=23.37 Aligned_cols=6 Identities=0% Similarity=-0.241 Sum_probs=2.6
Q ss_pred HHHHHH
Q psy2301 277 ACILCL 282 (350)
Q Consensus 277 ~~i~~l 282 (350)
.-|+.-
T Consensus 50 ~kW~~r 55 (71)
T PF10779_consen 50 TKWIWR 55 (71)
T ss_pred HHHHHH
Confidence 445433
No 68
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=58.49 E-value=7.7 Score=28.60 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=15.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Q psy2301 272 KNRKMACILCLASTTLILLILLILDK 297 (350)
Q Consensus 272 ~~rk~~~i~~li~iIiiiii~liv~k 297 (350)
+.+++.+++.++.+++++++++..+|
T Consensus 45 ~~~~~~~ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 45 NFNWIILIISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666666666666666544433
No 69
>KOG0260|consensus
Probab=57.66 E-value=8.2 Score=42.78 Aligned_cols=12 Identities=25% Similarity=0.147 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhc
Q psy2301 261 QQLAKAERYHRK 272 (350)
Q Consensus 261 ~eL~kA~~~qk~ 272 (350)
.-|..|.-+..+
T Consensus 1380 ~il~~aa~~~ek 1391 (1605)
T KOG0260|consen 1380 DILMDAAAHAEK 1391 (1605)
T ss_pred HHHHHHHhhhcc
Confidence 334444444433
No 70
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=57.62 E-value=62 Score=22.48 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2301 219 KSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKN 273 (350)
Q Consensus 219 ~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~ 273 (350)
..|.+|..-..+|..+..+=|..|+.=..-++....++..+...+.++.+.-++.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555556666666666666665555554443
No 71
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.12 E-value=2.8e+02 Score=29.88 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q psy2301 205 AQARIRSQEVDHIVKSIVDLNH 226 (350)
Q Consensus 205 ~~i~eR~~eI~~IE~sI~EL~~ 226 (350)
+.+.+-.++|.++-+.|..|+.
T Consensus 692 ~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 692 EILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444443
No 72
>PRK14762 membrane protein; Provisional
Probab=56.07 E-value=24 Score=20.36 Aligned_cols=20 Identities=20% Similarity=-0.017 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy2301 279 ILCLASTTLILLILLILDKE 298 (350)
Q Consensus 279 i~~li~iIiiiii~liv~k~ 298 (350)
|+++++.++.++++.-|+|+
T Consensus 6 w~i~iifligllvvtgvfkl 25 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGVFKM 25 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444443
No 73
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=54.21 E-value=2.4e+02 Score=28.28 Aligned_cols=158 Identities=9% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHH
Q psy2301 33 DALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLA 112 (350)
Q Consensus 33 ~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir 112 (350)
....+++..|..++.++..+....-.....++-.--..-+.++..-.+.+-..+..++..|+.|+.+.. ..-.|..
T Consensus 169 ~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~----~RgvRp~ 244 (424)
T PF03915_consen 169 EFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVV----QRGVRPS 244 (424)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCcCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHHHhhhhcCCCCcccc
Q psy2301 113 YNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKT 192 (350)
Q Consensus 113 ~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~ 192 (350)
..++.++...+..+.....+ ...|....|-...+. |+ ..++... .
T Consensus 245 ~~qle~v~kdi~~a~~~L~~-m~~~i~~~kp~WkKi---------------------WE----~EL~~V~---------e 289 (424)
T PF03915_consen 245 PKQLETVAKDISRASKELKK-MKEYIKTEKPIWKKI---------------------WE----SELQKVC---------E 289 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------------------HH----HHHHHHH---------H
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhCHHHHHH---------------------HH----HHHHHHH---------H
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q psy2301 193 QQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQG 239 (350)
Q Consensus 193 qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQg 239 (350)
+|+ .+....+-+..|...+..+.+.|.-+...+.+|+
T Consensus 290 EQq----------fL~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~ 326 (424)
T PF03915_consen 290 EQQ----------FLKLQEDLLSDLKEDLKKASETFALVEQCTEEQE 326 (424)
T ss_dssp HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 74
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=54.13 E-value=88 Score=24.75 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHH
Q psy2301 209 IRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVK 257 (350)
Q Consensus 209 eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~ 257 (350)
..-+.|..+.+.+.-..+=.+++..-+..||+.++.|..-+......+.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777777777777777778888999999999887776665544
No 75
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=54.08 E-value=44 Score=28.82 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhccchh-HHHHHHHH
Q psy2301 256 VKQGYQQLAKAERYHRKNRKM-ACILCLAS 284 (350)
Q Consensus 256 v~~g~~eL~kA~~~qk~~rk~-~~i~~li~ 284 (350)
.++=..++..|++-++++.|+ .+..++++
T Consensus 133 ~~~L~~~~~~a~~~~~~~~Klyr~LGvl~G 162 (170)
T PF09548_consen 133 LEQLEQQLEEAREEAKKKGKLYRSLGVLGG 162 (170)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 333345556666666565554 33333333
No 76
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=53.93 E-value=45 Score=28.89 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhccchh-HHHHHHHH
Q psy2301 258 QGYQQLAKAERYHRKNRKM-ACILCLAS 284 (350)
Q Consensus 258 ~g~~eL~kA~~~qk~~rk~-~~i~~li~ 284 (350)
+=..++.+|++.++++.|+ .+.-++++
T Consensus 135 ~L~~~~~~a~~~~~k~~Kmy~~LGvl~G 162 (170)
T TIGR02833 135 HLERQLTEAEDEQKKNEKMYRYLGVLVG 162 (170)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3345666677777776654 33333333
No 77
>PRK00295 hypothetical protein; Provisional
Probab=53.38 E-value=85 Score=22.81 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q psy2301 214 VDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQG 259 (350)
Q Consensus 214 I~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g 259 (350)
|.+||..+.-.-..-.+|+..|..|...||+....+..-...++..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777778888888889999999998888877776666554
No 78
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=53.31 E-value=47 Score=28.81 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhccchh-HHHHHHHH
Q psy2301 257 KQGYQQLAKAERYHRKNRKM-ACILCLAS 284 (350)
Q Consensus 257 ~~g~~eL~kA~~~qk~~rk~-~~i~~li~ 284 (350)
++=..++.+|++.++++.|+ .+.-++++
T Consensus 135 e~L~~~~~~a~~~~~k~~Kmy~~LGvl~G 163 (171)
T PRK08307 135 EHLEREEEEAEEEQKKNEKMYKYLGFLAG 163 (171)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 33345666777777776654 44444333
No 79
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=53.19 E-value=18 Score=30.88 Aligned_cols=24 Identities=4% Similarity=0.055 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhccchhHHHHHHHH
Q psy2301 261 QQLAKAERYHRKNRKMACILCLAS 284 (350)
Q Consensus 261 ~eL~kA~~~qk~~rk~~~i~~li~ 284 (350)
.+-....++||..||++=+||=++
T Consensus 16 ~~y~as~~r~k~~~R~i~l~~Ri~ 39 (161)
T PHA02673 16 ANYVASVKRQKAIRRYIKLFFRLM 39 (161)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666544443333
No 80
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=51.73 E-value=76 Score=21.77 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERY 269 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~ 269 (350)
.+.+-...+..|...-.++..|..+=|..|+.=...++....++..+...+.+|.+.
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555544
No 81
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=51.01 E-value=1.1e+02 Score=23.41 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHHHHhhhh-hHHHHHHhhHHHHHHHHHH
Q psy2301 218 VKSIVDLNHLFKDLSHMVVHQG-TILDRIDYNVERTEIEVKQ 258 (350)
Q Consensus 218 E~sI~EL~~iF~dLa~LV~eQg-e~IDrId~Nve~a~~~v~~ 258 (350)
+..+.++..+....+....+.. +.-++++..++.+...+..
T Consensus 8 ~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~ 49 (94)
T PF05957_consen 8 EQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED 49 (94)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433332 2334555555555444443
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.18 E-value=3.2e+02 Score=28.45 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=46.9
Q ss_pred CCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 25 SRAAPIWTDALEE-TQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQ 99 (350)
Q Consensus 25 ~~~~~~f~~~~~~-i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~ 99 (350)
...-..|-+.-++ +...+..|...+.+......+. .|......-.+++.+.+.+...+..+...|+.|...
T Consensus 63 ~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~----~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~ 134 (569)
T PRK04778 63 EEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKF----RFRKAKHEINEIESLLDLIEEDIEQILEELQELLES 134 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888887 7778888888888888877653 332222233456666666667777777777666543
No 83
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.23 E-value=1.7e+02 Score=29.32 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERY 269 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~ 269 (350)
.+.+=..+|.+.++.|.+..+-+..|...+.++.+-|++|+.-+-.+.....+-.++|......
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 3444457889999999999999999999999999999999999888888877777666555443
No 84
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=48.31 E-value=35 Score=22.80 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=20.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhh
Q psy2301 215 DHIVKSIVDLNHLFKDLSHMVVHQGT 240 (350)
Q Consensus 215 ~~IE~sI~EL~~iF~dLa~LV~eQge 240 (350)
..|-+.+.++++++.+|-.++.+|-.
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~k 29 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIK 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668888999999999988888754
No 85
>KOG1693|consensus
Probab=48.18 E-value=86 Score=27.96 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy2301 209 IRSQEVDHIVKSIVDLN 225 (350)
Q Consensus 209 eR~~eI~~IE~sI~EL~ 225 (350)
+|..+....|.++.+++
T Consensus 128 ~~~~~~~~mena~~~I~ 144 (209)
T KOG1693|consen 128 NRDTALTQMENAIVEIH 144 (209)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 34444444555544443
No 86
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.02 E-value=1.1e+02 Score=22.51 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQ 258 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~ 258 (350)
+.|.+||..+.=.-..-.+|+..|.+|...||+....+..-...++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666677677777777888888888888888777777666554
No 87
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=47.41 E-value=51 Score=23.35 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy2301 259 GYQQLAKAERYH 270 (350)
Q Consensus 259 g~~eL~kA~~~q 270 (350)
|..-|..-=++|
T Consensus 11 A~~FL~RvGr~q 22 (60)
T PF06072_consen 11 ATEFLRRVGRQQ 22 (60)
T ss_pred HHHHHHHHhHHH
Confidence 334444443444
No 88
>PRK00736 hypothetical protein; Provisional
Probab=47.37 E-value=1.1e+02 Score=22.26 Aligned_cols=45 Identities=7% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q psy2301 214 VDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQ 258 (350)
Q Consensus 214 I~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~ 258 (350)
|..||..+.-.-..-.+|+..|..|...||++...+..-...++.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777788888889998888888877777766654
No 89
>PHA02675 ORF104 fusion protein; Provisional
Probab=46.83 E-value=99 Score=23.49 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q psy2301 219 KSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQ 258 (350)
Q Consensus 219 ~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~ 258 (350)
..+..|-..|+.+..=-..=++.|+|.|.+.+....++-.
T Consensus 37 ~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~ 76 (90)
T PHA02675 37 ERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLK 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677777777777888999999998877666543
No 90
>PHA03240 envelope glycoprotein M; Provisional
Probab=46.66 E-value=17 Score=32.69 Aligned_cols=12 Identities=17% Similarity=0.132 Sum_probs=5.8
Q ss_pred cchhHHHHHHHH
Q psy2301 273 NRKMACILCLAS 284 (350)
Q Consensus 273 ~rk~~~i~~li~ 284 (350)
+..-.|++++++
T Consensus 210 aaH~~WIiilII 221 (258)
T PHA03240 210 AAHIAWIFIAII 221 (258)
T ss_pred cchHhHHHHHHH
Confidence 344456654443
No 91
>KOG0994|consensus
Probab=46.51 E-value=5e+02 Score=29.69 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQ 91 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~ 91 (350)
..++..+++.+...+.+.+....+.+...++.+... ..-+.++++-..+...+|.++.+
T Consensus 1424 l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a-----~as~~q~~~s~~el~~Li~~v~~ 1482 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQA-----NASRSQMEESNRELRNLIQQVRD 1482 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777766666666666665544211 11234555555555555555543
No 92
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=46.20 E-value=20 Score=30.43 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy2301 277 ACILCLASTTLILLILLILDKE 298 (350)
Q Consensus 277 ~~i~~li~iIiiiii~liv~k~ 298 (350)
.|+++++++.+.+.+.+++..+
T Consensus 9 l~~il~~~a~l~~a~~l~Lyal 30 (153)
T COG2332 9 LWIILAGLAGLALAVGLVLYAL 30 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444344444444444444333
No 93
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=46.11 E-value=27 Score=29.36 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy2301 276 MACILCLASTTLILLILLILD 296 (350)
Q Consensus 276 ~~~i~~li~iIiiiii~liv~ 296 (350)
++.|++.|+|.+++|++++.+
T Consensus 31 m~tILiaIvVliiiiivli~l 51 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYL 51 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445455543
No 94
>KOG1326|consensus
Probab=46.10 E-value=19 Score=39.37 Aligned_cols=29 Identities=38% Similarity=0.315 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccch
Q psy2301 277 ACILCLASTTLILLILLILDKESLFTYRP 305 (350)
Q Consensus 277 ~~i~~li~iIiiiii~liv~k~~~~~~~~ 305 (350)
.|.+++.++|+|++++++++.+++|-||.
T Consensus 1071 r~~il~~l~ililll~l~~fly~~p~yl~ 1099 (1105)
T KOG1326|consen 1071 RWYILLLLLILILLLLLALFLYSLPNYLA 1099 (1105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 34445555555555566665566655553
No 95
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=45.70 E-value=22 Score=33.14 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=13.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 272 KNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 272 ~~rk~~~i~~li~iIiiiii~liv 295 (350)
.+||+|.|+|++++.+++++-|++
T Consensus 8 Gwrk~cly~~vllL~il~iiNL~L 31 (264)
T PF04790_consen 8 GWRKRCLYLFVLLLFILAIINLAL 31 (264)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455566666655555555554443
No 96
>PF15106 TMEM156: TMEM156 protein family
Probab=44.94 E-value=25 Score=31.47 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy2301 277 ACILCLASTTLILLILLILDKE 298 (350)
Q Consensus 277 ~~i~~li~iIiiiii~liv~k~ 298 (350)
+.|..++++||+++++++|-|.
T Consensus 176 ITWYvLVllVfiflii~iI~KI 197 (226)
T PF15106_consen 176 ITWYVLVLLVFIFLIILIIYKI 197 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666544
No 97
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=44.54 E-value=3.8e+02 Score=27.81 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 25 SRAAPIWTDALEETQ-YALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKH 98 (350)
Q Consensus 25 ~~~~~~f~~~~~~i~-~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~ 98 (350)
...-..|-..-++|. ..+..+...+.+.+....+. .|......-.++++....+...+..+...|+.|..
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~----rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~ 129 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKY----RFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLE 129 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888877 77888888888888776553 23222223345666666666666666666666654
No 98
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=44.28 E-value=17 Score=36.96 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=21.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2301 241 ILDRIDYNVERTEIEVKQGYQQLAKAERYHRK 272 (350)
Q Consensus 241 ~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~ 272 (350)
-|+++...+++|.+.++++++-|.+......+
T Consensus 439 eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~~~~ 470 (490)
T PF00523_consen 439 ELGQVNNSLNNAKDLLDKSNQILDSVNPGISS 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45666777888888888888888876654333
No 99
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=44.14 E-value=77 Score=32.97 Aligned_cols=42 Identities=10% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHhhhhhHHHHH
Q psy2301 204 AAQARIRSQEVDHIVKSIVDLNHLFK----DLSHMVVHQGTILDRI 245 (350)
Q Consensus 204 ~~~i~eR~~eI~~IE~sI~EL~~iF~----dLa~LV~eQge~IDrI 245 (350)
..++++=.+.|..+++++..|+++-. .|-.|.-+||-+=.-+
T Consensus 434 ~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a~~Gg~C~~l 479 (561)
T PF00429_consen 434 EEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLTAEQGGLCAAL 479 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcCCchhhh
Confidence 34555555667777777777766432 3445666777654443
No 100
>PHA02849 putative transmembrane protein; Provisional
Probab=43.98 E-value=32 Score=25.72 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy2301 277 ACILCLASTTLILLILLILDKES 299 (350)
Q Consensus 277 ~~i~~li~iIiiiii~liv~k~~ 299 (350)
.+.+|+++++|++.+++.+.|++
T Consensus 19 vi~v~v~vI~i~~flLlyLvkws 41 (82)
T PHA02849 19 VILVFVLVISFLAFMLLYLIKWS 41 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666664
No 101
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=43.30 E-value=20 Score=33.18 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=9.8
Q ss_pred hhhHHHHHHhhHH
Q psy2301 238 QGTILDRIDYNVE 250 (350)
Q Consensus 238 Qge~IDrId~Nve 250 (350)
=|-|+..|-.|+|
T Consensus 176 P~~m~~siCqNiE 188 (285)
T PF03563_consen 176 PGSMIESICQNIE 188 (285)
T ss_pred hHHHHHHHhhchH
Confidence 4678888888876
No 102
>PHA02650 hypothetical protein; Provisional
Probab=42.71 E-value=37 Score=25.44 Aligned_cols=14 Identities=0% Similarity=-0.142 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy2301 277 ACILCLASTTLILL 290 (350)
Q Consensus 277 ~~i~~li~iIiiii 290 (350)
-|+.++++++++++
T Consensus 48 ~~~~~ii~i~~v~i 61 (81)
T PHA02650 48 NGQNFIFLIFSLII 61 (81)
T ss_pred hHHHHHHHHHHHHH
Confidence 34433333333333
No 103
>KOG0812|consensus
Probab=42.56 E-value=3e+02 Score=26.04 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HhccchhHHH
Q psy2301 204 AAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERY----HRKNRKMACI 279 (350)
Q Consensus 204 ~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~----qk~~rk~~~i 279 (350)
...+.+-++=++.=.++++.+-.-..||+.+..+=..||..=++-+....+||..+.-++.-|..- -.+-.+..|.
T Consensus 212 m~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwL 291 (311)
T KOG0812|consen 212 MALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWL 291 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHH
Confidence 344555556677777888888888999999999999999999999999999999999999887654 3444566888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2301 280 LCLASTTLILLILLILD 296 (350)
Q Consensus 280 ~~li~iIiiiii~liv~ 296 (350)
++=++.|++++++++|+
T Consensus 292 mvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 292 MVKIFGILIVFFLVFVL 308 (311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76655555555554443
No 104
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=41.54 E-value=2.6e+02 Score=25.07 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=8.1
Q ss_pred HHhccchhHHHHHHHHHH
Q psy2301 269 YHRKNRKMACILCLASTT 286 (350)
Q Consensus 269 ~qk~~rk~~~i~~li~iI 286 (350)
.++-.++..|.+++++++
T Consensus 177 q~~a~~~~~~~li~~~~~ 194 (207)
T COG5278 177 QQNAARTLRIALIIGGIV 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555554444433
No 105
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.24 E-value=6.2e+02 Score=29.30 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERT 252 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a 252 (350)
..+..++..+.+++.=...+..-+.++...-.++..|+..-
T Consensus 984 ~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444
No 106
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.85 E-value=29 Score=30.37 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy2301 275 KMACILCLASTTLILLILLI 294 (350)
Q Consensus 275 k~~~i~~li~iIiiiii~li 294 (350)
+|||.||+.+.+-+++++++
T Consensus 10 ~WKw~f~iLLAln~l~~~~i 29 (197)
T COG4698 10 YWKWLFFILLALNTLLAVLI 29 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47777765554444444333
No 107
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=40.18 E-value=2.5e+02 Score=24.43 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 70 EQETKIELLTQEISRMFNGCHQLIQKIKHQ 99 (350)
Q Consensus 70 ~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~ 99 (350)
.+..+++....+.+..++++.+.|+.++..
T Consensus 113 rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~ 142 (171)
T PF04799_consen 113 RLCQQVDQTKNELEDEIKQLEKEIQRLEEI 142 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666654
No 108
>PHA02657 hypothetical protein; Provisional
Probab=40.15 E-value=39 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy2301 278 CILCLASTTLILLILLILDKESL 300 (350)
Q Consensus 278 ~i~~li~iIiiiii~liv~k~~~ 300 (350)
+-+|+++|.|++++++.+.||+.
T Consensus 30 itvfv~vI~il~flLLYLvkWS~ 52 (95)
T PHA02657 30 FTIFIFVVCILIYLLIYLVDWSL 52 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666777777753
No 109
>PRK04406 hypothetical protein; Provisional
Probab=39.91 E-value=1.6e+02 Score=21.94 Aligned_cols=47 Identities=9% Similarity=0.203 Sum_probs=33.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQ 258 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~ 258 (350)
+.|..||..+.=.-..-.+|+..|.+|...||+....+..-...++.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666777777778888888888887777766665543
No 110
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.81 E-value=1.5e+02 Score=29.48 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=10.6
Q ss_pred HHHHhhhhhHHHHHHhhHHHHHH
Q psy2301 232 SHMVVHQGTILDRIDYNVERTEI 254 (350)
Q Consensus 232 a~LV~eQge~IDrId~Nve~a~~ 254 (350)
+......+...++...++-.+-+
T Consensus 111 s~al~~~~~~F~~~~~~~v~~gE 133 (397)
T COG1459 111 SEALAQLPGVFPDLYVAMVAAGE 133 (397)
T ss_pred HHHHHhCcccCCHHHHHHHHHHH
Confidence 33444444445555544444444
No 111
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=39.51 E-value=48 Score=21.12 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy2301 282 LASTTLILLILLI 294 (350)
Q Consensus 282 li~iIiiiii~li 294 (350)
+.+..|.++|.++
T Consensus 14 l~~llflv~imli 26 (43)
T PF11395_consen 14 LSFLLFLVIIMLI 26 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 112
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=39.45 E-value=1.8e+02 Score=23.83 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q psy2301 68 STEQETKIELLTQEISRMFNGC 89 (350)
Q Consensus 68 ~~~~~~~I~~l~~~I~~~~~~i 89 (350)
....+.-..+++.+|++.+.+|
T Consensus 36 ~e~lEsiAAKIIkDisdkIdkC 57 (121)
T PF03310_consen 36 QENLESIAAKIIKDISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445556777777777777
No 113
>COG4640 Predicted membrane protein [Function unknown]
Probab=39.21 E-value=35 Score=33.56 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q psy2301 257 KQGYQQLAKAERYHRKNRKMACILCLASTTLILLI 291 (350)
Q Consensus 257 ~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii 291 (350)
.+|++.+..-..-.|++-.++-++.+..++|++|+
T Consensus 30 sqan~~tn~i~~trrkniskK~ii~was~a~~lIl 64 (465)
T COG4640 30 SQANKSTNEIIQTRRKNISKKKIIPWASGAFILIL 64 (465)
T ss_pred hhhhHHHHHHHHhhccCCccceeehhHHHHHHHHH
Confidence 35555555544444444444333333333333333
No 114
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.13 E-value=1.7e+02 Score=28.23 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2301 116 ISSLVTNLQQKSIQFRSMQ 134 (350)
Q Consensus 116 ~~~L~~kl~~i~~~fq~~q 134 (350)
.+.+..++++.-..+.+++
T Consensus 70 i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 4444544444444444443
No 115
>PHA03054 IMV membrane protein; Provisional
Probab=39.01 E-value=48 Score=24.33 Aligned_cols=17 Identities=6% Similarity=0.082 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy2301 275 KMACILCLASTTLILLI 291 (350)
Q Consensus 275 k~~~i~~li~iIiiiii 291 (350)
..-|+.+++++++++++
T Consensus 45 ~~~~~~~ii~l~~v~~~ 61 (72)
T PHA03054 45 CWGWYWLIIIFFIVLIL 61 (72)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 45667766554443333
No 116
>KOG0994|consensus
Probab=38.95 E-value=6.5e+02 Score=28.85 Aligned_cols=69 Identities=7% Similarity=0.044 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2301 32 TDALEETQYALPRLENKLKELEKLQESHLLRPTLDEST---EQETKIELLTQEISRMFNGCHQLIQKIKHQSS 101 (350)
Q Consensus 32 ~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~---~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~ 101 (350)
+..+.++...|..-....+++-+.........+ .... ..-.+.+..........+.+++.|+++++...
T Consensus 1414 ~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~as-eA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1414 LLMAGDADTQLRSKLAEAEQTLSMVREAKLSAS-EAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666665555555444444433221110 0011 11123334444555556666666666666543
No 117
>PHA02844 putative transmembrane protein; Provisional
Probab=38.59 E-value=48 Score=24.56 Aligned_cols=16 Identities=0% Similarity=0.206 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHH
Q psy2301 275 KMACILCLASTTLILL 290 (350)
Q Consensus 275 k~~~i~~li~iIiiii 290 (350)
...|+.++++++++++
T Consensus 45 ~~~~~~~ii~i~~v~~ 60 (75)
T PHA02844 45 SSSTKIWILTIIFVVF 60 (75)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 4567776655433333
No 118
>PRK02119 hypothetical protein; Provisional
Probab=38.54 E-value=1.6e+02 Score=21.70 Aligned_cols=47 Identities=13% Similarity=0.317 Sum_probs=35.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQ 258 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~ 258 (350)
+.|.+||..+.-.-..-.+|+..|..|...||+....+..-...++.
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777777788888899999888888877777666654
No 119
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=37.97 E-value=41 Score=23.79 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=4.2
Q ss_pred HHHHHHHHhc
Q psy2301 263 LAKAERYHRK 272 (350)
Q Consensus 263 L~kA~~~qk~ 272 (350)
|.|-++++|+
T Consensus 33 l~ker~R~r~ 42 (64)
T COG4068 33 LNKERKRQRN 42 (64)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 120
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=37.86 E-value=46 Score=26.00 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy2301 277 ACILCLASTTLILLILLILDK 297 (350)
Q Consensus 277 ~~i~~li~iIiiiii~liv~k 297 (350)
+..+|..+.|.++||++||.+
T Consensus 15 K~~~FA~L~i~~FiILLIi~~ 35 (121)
T PF10669_consen 15 KIMFFAFLFIVVFIILLIITK 35 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666676654
No 121
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=37.85 E-value=1.9 Score=32.62 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=0.4
Q ss_pred HhccchhHHHH
Q psy2301 270 HRKNRKMACIL 280 (350)
Q Consensus 270 qk~~rk~~~i~ 280 (350)
.++.|+|.|++
T Consensus 61 ~rkKrrwlwLl 71 (81)
T PF14812_consen 61 PRKKRRWLWLL 71 (81)
T ss_dssp ----------T
T ss_pred ccccchhHHHH
Confidence 44444444443
No 122
>PHA02819 hypothetical protein; Provisional
Probab=37.30 E-value=52 Score=24.13 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=10.9
Q ss_pred HHhccc-hhHHHHHHHHHHHHHH
Q psy2301 269 YHRKNR-KMACILCLASTTLILL 290 (350)
Q Consensus 269 ~qk~~r-k~~~i~~li~iIiiii 290 (350)
+.++++ ..-|+.++++++++++
T Consensus 36 ~~~~~~~~~~~~~~ii~l~~~~~ 58 (71)
T PHA02819 36 YNKKTKKSFLRYYLIIGLVTIVF 58 (71)
T ss_pred CcccccCChhHHHHHHHHHHHHH
Confidence 334444 4566666655443333
No 123
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.94 E-value=44 Score=28.71 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---ccccchh
Q psy2301 278 CILCLASTTLILLILLILDKES---LFTYRPI 306 (350)
Q Consensus 278 ~i~~li~iIiiiii~liv~k~~---~~~~~~~ 306 (350)
|+++++++++++...|++..+. .+.|.|+
T Consensus 10 ~~v~~~~~~~~~a~~Lvl~al~~n~~yF~tPs 41 (159)
T PRK13150 10 WVVCAVLAGLGLTTALVLYALRANIDLFYTPG 41 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCccEEeCHH
Confidence 4444444444444455544332 2445554
No 124
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=36.67 E-value=1.7e+02 Score=21.38 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy2301 208 RIRSQEVDHIVKSIVDLNHLFKDLSHMVVH 237 (350)
Q Consensus 208 ~eR~~eI~~IE~sI~EL~~iF~dLa~LV~e 237 (350)
.+|...|.++++.+.|..++..+|...|..
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~ 50 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRS 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999988763
No 125
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=36.58 E-value=2.3e+02 Score=22.98 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 76 ELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQ 134 (350)
Q Consensus 76 ~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q 134 (350)
.++...++.++..++..+.+.+. +......|.|+. ..++..++++||..-
T Consensus 3 Kdt~~kmkeL~e~~~~D~~K~EK----GNKAAGtRaRK~-----sleLeKLaKefRKeS 52 (123)
T PF07432_consen 3 KDTFKKMKELLESFEADAEKAEK----GNKAAGTRARKA-----SLELEKLAKEFRKES 52 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 34556666777777766655433 233455677664 557888888888753
No 126
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=36.17 E-value=1.4e+02 Score=21.69 Aligned_cols=50 Identities=16% Similarity=0.002 Sum_probs=27.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy2301 245 IDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLI 294 (350)
Q Consensus 245 Id~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~li 294 (350)
+++-.+...+++++...=|..|++--+.--.+..++.+++++++-++-++
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfi 53 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFI 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777665543333234444444444444444333
No 127
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=35.48 E-value=2.5e+02 Score=23.10 Aligned_cols=89 Identities=17% Similarity=0.279 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy2301 35 LEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYN 114 (350)
Q Consensus 35 ~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir~n 114 (350)
+..+...++.|....+.|...-..... .........+.-..+-+.+-..+...+..+....+ .|.
T Consensus 22 ~~~v~~~l~~LEae~q~L~~kE~~r~~-----~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~-------~r~--- 86 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQKEEARYN-----EEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSK-------VRW--- 86 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-------GST---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-------hhH---
Confidence 466777788888777777666554321 01111122333333333444555555566655432 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 115 VISSLVTNLQQKSIQFRSMQSSYLNKIK 142 (350)
Q Consensus 115 ~~~~L~~kl~~i~~~fq~~q~~~~~~~k 142 (350)
.+..++++.++|.+....--+.++
T Consensus 87 ----yk~eYk~llk~y~~~~~~L~k~I~ 110 (126)
T PF09403_consen 87 ----YKDEYKELLKKYKDLLNKLDKEIA 110 (126)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665544333333
No 128
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.30 E-value=2.2e+02 Score=22.23 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhhh-hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2301 217 IVKSIVDLNHLFKDLSHMVVHQ-GTILDRIDYNVERTEIEVKQGYQQLAKAERY 269 (350)
Q Consensus 217 IE~sI~EL~~iF~dLa~LV~eQ-ge~IDrId~Nve~a~~~v~~g~~eL~kA~~~ 269 (350)
.+..-.+|..-|.+|-..+.+. ..++++||..-......+..-...+......
T Consensus 37 ~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 37 AADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566778888887777754 5788899887776666666655555544443
No 129
>KOG1842|consensus
Probab=35.09 E-value=4.9e+02 Score=26.28 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=53.8
Q ss_pred ccCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 22 YFDSRAA-PIWTDALEETQYALPRLENKLKELEKLQESHL-LRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQ 99 (350)
Q Consensus 22 ~~~~~~~-~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l-~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~ 99 (350)
+.++..+ |.|++..+.++.-...+...+..-.+...... ..++++ -+.-.++.....++-..+....++|..+-..
T Consensus 264 ~~d~r~~~p~ivq~Ye~mq~~~k~v~~~~p~Y~~~l~SL~~get~~t--lk~~~dLR~k~~el~~s~D~~sKkI~~l~~~ 341 (505)
T KOG1842|consen 264 QQDEREPSPGIVQHYEHLQVFRKEVDNLLPLYEDSLNSLKEGETTYT--LKHAKDLRKKFLELCESIDGTSKKIANLPSS 341 (505)
T ss_pred hhhhccCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccccccc--HhhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4455565 78888887776665555544433222222110 011111 1111234444444444555555555544443
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 100 SSDAYTSREKRLAYNVISSLVTNLQQKSIQ 129 (350)
Q Consensus 100 ~~~~~~~~e~rir~n~~~~L~~kl~~i~~~ 129 (350)
+.++.+.++++++.-.-..-++..+-.
T Consensus 342 ---p~~~~E~qLkk~Irl~a~~~lqEkiL~ 368 (505)
T KOG1842|consen 342 ---PPSDAEEQLKKNIRLEAKQYLQEKILR 368 (505)
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345678899888877777666666544
No 130
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=34.93 E-value=1e+02 Score=30.64 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=4.7
Q ss_pred HHhHHHHHHHH
Q psy2301 218 VKSIVDLNHLF 228 (350)
Q Consensus 218 E~sI~EL~~iF 228 (350)
+..+.+|.++|
T Consensus 124 ~~~l~~Le~~~ 134 (406)
T PF04906_consen 124 EQHLTRLEEIF 134 (406)
T ss_pred HHHHHHHHHHh
Confidence 33444444444
No 131
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.63 E-value=2.9e+02 Score=23.52 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQ 99 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~ 99 (350)
+..+-..+.+++..+..+...+..|+.-.......|+ . .++...+......+..++.+|..++..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t---~----~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT---N----EELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---H----HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344555666777777777666666555544332222 1 244445555555667777777777764
No 132
>KOG0972|consensus
Probab=34.42 E-value=4.1e+02 Score=25.25 Aligned_cols=56 Identities=11% Similarity=0.224 Sum_probs=29.0
Q ss_pred hHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHH
Q psy2301 29 PIWTDALEET--------QYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGC 89 (350)
Q Consensus 29 ~~f~~~~~~i--------~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i 89 (350)
.+|...++.+ +.+-..-+--++.+..+|+.+..+ .+. ....++.+.++|+..+..|
T Consensus 201 ~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~--~~~---~~~~Ldklh~eit~~LEkI 264 (384)
T KOG0972|consen 201 IEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQK--VGN---VGPYLDKLHKEITKALEKI 264 (384)
T ss_pred HHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHh--hcc---hhHHHHHHHHHHHHHHHHH
Confidence 4577776653 333344455666666666665432 111 1235565666655554444
No 133
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.42 E-value=1.9e+02 Score=24.77 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhccch
Q psy2301 254 IEVKQGYQQLAKAERYHRKNRK 275 (350)
Q Consensus 254 ~~v~~g~~eL~kA~~~qk~~rk 275 (350)
-.+.++.+||++..+...+.+.
T Consensus 73 Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 73 RKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777766666666553
No 134
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=34.26 E-value=93 Score=23.45 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=31.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 24 DSRAAPIWTDALEETQYALPRLENKLKELEKLQES 58 (350)
Q Consensus 24 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~ 58 (350)
.....+.|..+|.+|...|.+++..|.+++.-+-.
T Consensus 34 ~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~ 68 (87)
T PF10496_consen 34 KTKPKDEFLKEAYRILSHITSLRKFLKSIRKAYLS 68 (87)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999988765
No 135
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=34.03 E-value=5e+02 Score=26.05 Aligned_cols=169 Identities=12% Similarity=0.178 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---------
Q psy2301 34 ALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAY--------- 104 (350)
Q Consensus 34 ~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~--------- 104 (350)
.++.+-..+++++..++.|++-.-..-.+|. . .+++... +.+..+++.|++|+.+.+...
T Consensus 218 ~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~----~---~qLe~v~----kdi~~a~keL~~m~~~i~~eKP~WkKiWE~ 286 (426)
T smart00806 218 DSDSLLTKVDDLQDIIEALRKDVAQRGVRPS----K---KQLETVQ----KELETARKELKKMEEYIDIEKPIWKKIWEA 286 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----H---HHHHHHH----HHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence 3444444555555555555554433322232 2 2444433 344455555566655433110
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHH
Q psy2301 105 -------TSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEM 177 (350)
Q Consensus 105 -------~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (350)
......+.......|...+..+...|-.+++--.++.+.......+.+. -++ ++ ..+...
T Consensus 287 EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~~eQ~k~~~~~~~~~~~--l~i----~~-------pg~~~~ 353 (426)
T smart00806 287 ELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQCCEEQEKGPSKNRNKPVS--LPV----PT-------PGTFND 353 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcc--CCC----CC-------CCChhH
Confidence 0134455666778888888889999988877655544421111111100 000 00 001111
Q ss_pred HHhhh----hcCCCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q psy2301 178 IDRQF----ESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQ 238 (350)
Q Consensus 178 ie~~~----~~~~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQ 238 (350)
+-+++ ..-.|. .+ .--++-+|.+.+++-|.....++..-.+|+.-|++.
T Consensus 354 ~kd~VL~EV~aL~Pd---HE---------sRLeAIErAEklR~kEle~r~~d~Fq~ELg~FVe~~ 406 (426)
T smart00806 354 LKDQVLMEVRALKPD---HE---------SRLEAIERAEKLREKELEYRRVDEFEKELGNFVENG 406 (426)
T ss_pred HHHHHHHHHHccCCC---hH---------HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccC
Confidence 11111 011111 11 122445788888999989899999999999998764
No 136
>KOG1962|consensus
Probab=32.74 E-value=3.8e+02 Score=24.28 Aligned_cols=52 Identities=8% Similarity=0.188 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 73 TKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSY 137 (350)
Q Consensus 73 ~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~ 137 (350)
.+.+.+..+...+-+++++.-++++.. ++....|.++..+...+|-....+|
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~-------------~~~~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKA-------------QKKVDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 344555555555555555544444432 3445555656665555555554443
No 137
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=32.68 E-value=49 Score=32.51 Aligned_cols=36 Identities=11% Similarity=0.300 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHH
Q psy2301 216 HIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVER 251 (350)
Q Consensus 216 ~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~ 251 (350)
.+...+.+...+|-+.-.-...-||.=-++++-.+.
T Consensus 110 sls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~ 145 (399)
T PRK10573 110 AFSEALLQWPQVFPPLYQALIATGELTGKLDECCFQ 145 (399)
T ss_pred cHHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHH
Confidence 355555555555555433333344433333433333
No 138
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.40 E-value=4.9e+02 Score=25.47 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=12.2
Q ss_pred CCChhHHHHHHHHHHHHH
Q psy2301 25 SRAAPIWTDALEETQYAL 42 (350)
Q Consensus 25 ~~~~~~f~~~~~~i~~~i 42 (350)
..-+.+|..+++.+.-.|
T Consensus 190 ~vd~~eWklEvERV~PqL 207 (359)
T PF10498_consen 190 KVDPAEWKLEVERVLPQL 207 (359)
T ss_pred cCCHHHHHHHHHHHhhhh
Confidence 344567888888777666
No 139
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=31.60 E-value=83 Score=20.00 Aligned_cols=9 Identities=11% Similarity=-0.012 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q psy2301 277 ACILCLAST 285 (350)
Q Consensus 277 ~~i~~li~i 285 (350)
.|+.|.+..
T Consensus 15 ~Wi~F~l~m 23 (38)
T PF09125_consen 15 GWIAFALAM 23 (38)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 455554443
No 140
>PHA03164 hypothetical protein; Provisional
Probab=31.42 E-value=62 Score=24.09 Aligned_cols=25 Identities=8% Similarity=0.006 Sum_probs=15.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Q psy2301 272 KNRKMACILCLASTTLILLILLILD 296 (350)
Q Consensus 272 ~~rk~~~i~~li~iIiiiii~liv~ 296 (350)
....+.+-+++|.+|+.+++++.|+
T Consensus 57 tftFlvLtgLaIamILfiifvlyvF 81 (88)
T PHA03164 57 TFTFLVLTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHhe
Confidence 3334555666677676666666664
No 141
>KOG3950|consensus
Probab=31.37 E-value=52 Score=30.24 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=12.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q psy2301 273 NRKMACILCLASTTLILLILLI 294 (350)
Q Consensus 273 ~rk~~~i~~li~iIiiiii~li 294 (350)
+||.|++.|+.++.|++++-++
T Consensus 32 WRKrcLY~fvLlL~i~ivvNLa 53 (292)
T KOG3950|consen 32 WRKRCLYTFVLLLMILIVVNLA 53 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667666555555554333
No 142
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=31.28 E-value=1.5e+02 Score=21.16 Aligned_cols=49 Identities=18% Similarity=0.047 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 247 YNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 247 ~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv 295 (350)
...+...+.++....=++.|++--++--+......+++++++-++.++|
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777776665544444556666666666666655554
No 143
>PHA02414 hypothetical protein
Probab=31.23 E-value=2.6e+02 Score=21.93 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=29.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVK 257 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~ 257 (350)
+-++++..+.||..|-.-|..=|.-|.|-=.-|-+.++.-.+.++
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 345677777788777777766666677666667676665444443
No 144
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=31.01 E-value=54 Score=19.19 Aligned_cols=7 Identities=57% Similarity=1.136 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy2301 289 LLILLIL 295 (350)
Q Consensus 289 iii~liv 295 (350)
++|++++
T Consensus 14 LFILLII 20 (26)
T TIGR01732 14 LFILLVI 20 (26)
T ss_pred HHHHHHH
Confidence 3333333
No 145
>PRK00846 hypothetical protein; Provisional
Probab=30.55 E-value=2.3e+02 Score=21.20 Aligned_cols=48 Identities=6% Similarity=-0.030 Sum_probs=34.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
.|..||..+.=.-..-.+|+..|..|...||+...-+..-.+.++...
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666667777777888888888888888777777666543
No 146
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.36 E-value=72 Score=26.17 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy2301 275 KMACILCLASTTLILLILLI 294 (350)
Q Consensus 275 k~~~i~~li~iIiiiii~li 294 (350)
...+|+|.++.-|+++|+++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHH
Confidence 34555554444444444333
No 147
>PRK11020 hypothetical protein; Provisional
Probab=30.36 E-value=2.4e+02 Score=22.81 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy2301 38 TQYALPRLENKLKELEKLQESH 59 (350)
Q Consensus 38 i~~~i~~i~~~i~~L~~l~~~~ 59 (350)
.+..|..++..++.++......
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa 24 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAA 24 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666776666666555443
No 148
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=30.24 E-value=55 Score=24.81 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q psy2301 281 CLASTTLILLILLILDKESLFTY 303 (350)
Q Consensus 281 ~li~iIiiiii~liv~k~~~~~~ 303 (350)
.++.+++++|++++|+..++--|
T Consensus 8 ~iialiv~~iiaIvvW~iv~ieY 30 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTIVYIEY 30 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666665554444
No 149
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.95 E-value=62 Score=24.27 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=12.5
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q psy2301 241 ILDRIDYNVERTEIEVKQG 259 (350)
Q Consensus 241 ~IDrId~Nve~a~~~v~~g 259 (350)
.++.||.+.....-...+.
T Consensus 10 ~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFAAR 28 (82)
T ss_pred HHHHHHHHHHhcCcHHHHH
Confidence 7888888876655554433
No 150
>KOG3287|consensus
Probab=29.76 E-value=2.4e+02 Score=25.60 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=9.6
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q psy2301 241 ILDRIDYNVERTEIEVKQG 259 (350)
Q Consensus 241 ~IDrId~Nve~a~~~v~~g 259 (350)
.+|.|++-+.....|+.+.
T Consensus 154 kl~di~~~i~~i~~nl~k~ 172 (236)
T KOG3287|consen 154 KLDDIEDSIGTIKNNLNKM 172 (236)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
No 151
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=29.49 E-value=2.4e+02 Score=21.04 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 37 ETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKH 98 (350)
Q Consensus 37 ~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~ 98 (350)
.|+.+|..+..++..|+......- ....+-+.+..+++.+. ..+..++.++..+.+
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~--~~~~~v~~l~~klDa~~----~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLE--SNLPDVTELNKKLDAQS----AQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcCCchHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 466666666666666666555432 23333333334444443 334444445554444
No 152
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.32 E-value=73 Score=27.01 Aligned_cols=19 Identities=32% Similarity=0.237 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2301 278 CILCLASTTLILLILLILD 296 (350)
Q Consensus 278 ~i~~li~iIiiiii~liv~ 296 (350)
|++++++++++++..+++.
T Consensus 10 ~~~~~~~~~~~~~~~L~~~ 28 (148)
T PRK13254 10 LIILGALAALGLAVALVLY 28 (148)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3343444444444444443
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.17 E-value=4.5e+02 Score=24.01 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy2301 42 LPRLENKLKELEKLQESHL 60 (350)
Q Consensus 42 i~~i~~~i~~L~~l~~~~l 60 (350)
|.+|+.++.++.++...++
T Consensus 3 i~~ir~K~~~lek~k~~i~ 21 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEIL 21 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666554
No 154
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=29.16 E-value=53 Score=18.81 Aligned_cols=7 Identities=71% Similarity=1.179 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy2301 289 LLILLIL 295 (350)
Q Consensus 289 iii~liv 295 (350)
++|++++
T Consensus 12 LFILLiI 18 (24)
T PF09680_consen 12 LFILLII 18 (24)
T ss_pred HHHHHHH
Confidence 3334444
No 155
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.92 E-value=74 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy2301 278 CILCLASTTLILLILLILDKE 298 (350)
Q Consensus 278 ~i~~li~iIiiiii~liv~k~ 298 (350)
|+++++++.+++.+.|++..+
T Consensus 10 ~~~~~~~~~~~~a~~L~l~al 30 (160)
T PRK13165 10 WLACAVLAGLALTIGLVLYAL 30 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 156
>PRK13673 hypothetical protein; Provisional
Probab=28.81 E-value=1.2e+02 Score=24.71 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q psy2301 259 GYQQLAKAERYHRKNRKMACILCLASTTLI 288 (350)
Q Consensus 259 g~~eL~kA~~~qk~~rk~~~i~~li~iIii 288 (350)
|--|..-+++.+++.....|+.+++++|+.
T Consensus 75 g~mEm~l~r~kk~k~~~~~~~~~ii~lvlt 104 (118)
T PRK13673 75 GLMEMSLAKRKKGKPTGGFWWIFIIVLVLT 104 (118)
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 444555566666555566677666554433
No 157
>KOG3251|consensus
Probab=28.45 E-value=3.3e+02 Score=24.56 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2301 36 EETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSS 101 (350)
Q Consensus 36 ~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~ 101 (350)
+.++..+.++...+.+++...+ + .++..+..+|...+.++...++.++...+
T Consensus 6 ~~t~~~~~k~q~~l~rlE~~~~------~--------~e~~~v~~~i~~sI~~~~s~~~rl~~~~~ 57 (213)
T KOG3251|consen 6 QSTNRQLDKLQRGLIRLERTIK------T--------QEVSAVENSIQRSIDQYASRCQRLDVLVS 57 (213)
T ss_pred HHHHHHHHHHHHHHHHHHcccc------c--------cchHHHHHHHHHhHHHHHHHHHHHHhHhh
Confidence 3445555555555555554211 1 24555667777888888888888876644
No 158
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=28.42 E-value=23 Score=31.18 Aligned_cols=8 Identities=13% Similarity=0.438 Sum_probs=3.0
Q ss_pred cchhHHHH
Q psy2301 273 NRKMACIL 280 (350)
Q Consensus 273 ~rk~~~i~ 280 (350)
+++++|+|
T Consensus 16 ~~~l~~iI 23 (182)
T PRK08455 16 SKALLIII 23 (182)
T ss_pred CceeEEeh
Confidence 33433333
No 159
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=28.07 E-value=5.1e+02 Score=24.31 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHH
Q psy2301 29 PIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCH 90 (350)
Q Consensus 29 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~ 90 (350)
.+|-+..+.-.+.|..|+..+..++.+++. ..+|...++.+++-+..++
T Consensus 217 sEWA~V~~AwkneLsEINSI~~gvEeLkKL-------------AqEIss~Sn~lk~TIseLE 265 (353)
T PF01540_consen 217 SEWARVQEAWKNELSEINSIIKGVEELKKL-------------AQEISSHSNKLKATISELE 265 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666544444444332 1345555555555555554
No 160
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=28.04 E-value=1.2e+02 Score=27.65 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhccchhHHHH
Q psy2301 260 YQQLAKAERYHRKNRKMACIL 280 (350)
Q Consensus 260 ~~eL~kA~~~qk~~rk~~~i~ 280 (350)
.+|+..|.+.+++.-++..|+
T Consensus 10 ~~Qi~q~y~~trk~dp~l~~~ 30 (224)
T PF13829_consen 10 RKQIWQAYKMTRKEDPKLPWL 30 (224)
T ss_pred HHHHHHHHHHHHHHCcchHHH
Confidence 578999999998877654443
No 161
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=28.03 E-value=3.4e+02 Score=22.27 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=36.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2301 215 DHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKN 273 (350)
Q Consensus 215 ~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~ 273 (350)
...+-++....-+-.--..-++.=...-.+|+..++.+..+++....+|..|+...+..
T Consensus 56 ~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k 114 (139)
T PF05615_consen 56 AQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK 114 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443332222223333344556788888899999999999999888775543
No 162
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.74 E-value=2.6e+02 Score=27.79 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q psy2301 205 AQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQ 258 (350)
Q Consensus 205 ~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~ 258 (350)
+++.++-++=..+...+.... +|..+.......||---+.|.-.+.+.+.-++
T Consensus 301 ~~~~~~v~~G~sl~~al~~~~-~Fp~~~~~mi~~GEesG~L~~mL~~~A~~~~~ 353 (397)
T COG1459 301 EEIIQEVREGGSLSQALEKTG-LFPPLLLQMIAVGEESGKLDEMLEKVADFYEE 353 (397)
T ss_pred HHHHHHHHcchhHHHHHHhCC-CChHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 344444444445555555544 88888888899999988888888887766543
No 163
>KOG0568|consensus
Probab=27.71 E-value=2e+02 Score=26.25 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=39.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 24 DSRAAPIWTDALEETQYALPRLENKLKELEKLQES-HLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKI 96 (350)
Q Consensus 24 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~-~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l 96 (350)
+.+..|+|.-.-.+|+..|.+++..+..=.+.... .+.+ .+|.. .-+-.+......++++++.|+..
T Consensus 251 dngfqpewi~~~kdi~dai~qlkeai~~~rk~~g~wpl~r--p~d~~----~w~~~~~~~qddikklnk~iddf 318 (342)
T KOG0568|consen 251 DNGFQPEWILKGKDIRDAIAQLKEAILQERKKLGEWPLQR--PDDKA----AWKHFCENFQDDIKKLNKLIDDF 318 (342)
T ss_pred cCCCChHHHhccchHHHHHHHHHHHHHHHHHHhCCCCCCC--cchHH----HHHHHHHHHHHHHHHHHHHhhhc
Confidence 56788999999999999999998776544433332 2211 23332 33334444444555555555443
No 164
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.58 E-value=4.8e+02 Score=23.88 Aligned_cols=90 Identities=12% Similarity=0.207 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy2301 35 LEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYN 114 (350)
Q Consensus 35 ~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir~n 114 (350)
-.+|..-+.++...+......+.++..+.+.. +=+.+-++.++-|+.+++.=++++.-... .+.. -++
T Consensus 7 Q~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~-------QKEK~E~DLKkEIKKLQR~RdQIK~W~~~----~diK-dk~ 74 (233)
T PF04065_consen 7 QQEIDRTLKKVQEGVEEFDEIYEKVESATNQN-------QKEKLEADLKKEIKKLQRLRDQIKTWLSS----NDIK-DKK 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHccC----cccc-cHH
Confidence 45788888899999999999999986533221 22233355555555555444444433221 1111 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2301 115 VISSLVTNLQQKSIQFRSMQSS 136 (350)
Q Consensus 115 ~~~~L~~kl~~i~~~fq~~q~~ 136 (350)
...-.++.+...|.+|+.+++.
T Consensus 75 ~L~e~Rk~IE~~MErFK~vEke 96 (233)
T PF04065_consen 75 KLLENRKLIEEQMERFKVVEKE 96 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777788888887654
No 165
>KOG2459|consensus
Probab=27.45 E-value=91 Score=31.86 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQL 263 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL 263 (350)
.+.+--.+++.|.++-+.|+.||.. |.|-++|..|...+.+|...|
T Consensus 419 nl~~AssTL~SL~kL~~qis~mvI~-----dEV~~~V~~al~~~~~a~~~l 464 (536)
T KOG2459|consen 419 NLMTASSTLQSLAKLVQQISNMVIP-----DEVADRVTRALAALLQAIDAL 464 (536)
T ss_pred HHHHHHHHHHHHHHHHHhccccccc-----HHHHHHHHHHHHHHHHHHHHh
Confidence 3444456777888888888888765 666677777776666665554
No 166
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=27.43 E-value=1.8e+02 Score=24.92 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=17.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy2301 242 LDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLAST 285 (350)
Q Consensus 242 IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~i 285 (350)
+..|+--.++-....+.|.++. .++.|=.|.+-..+=+.+|
T Consensus 126 ~k~i~l~~~~L~~~~~~a~~~~---~~~~Klyr~LGvl~G~~lv 166 (170)
T PF09548_consen 126 EKHIELYLEQLEQQLEEAREEA---KKKGKLYRSLGVLGGLFLV 166 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHH
Confidence 3333333344444444444433 3444455555444333443
No 167
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=27.42 E-value=39 Score=29.82 Aligned_cols=20 Identities=0% Similarity=0.069 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy2301 275 KMACILCLASTTLILLILLI 294 (350)
Q Consensus 275 k~~~i~~li~iIiiiii~li 294 (350)
+|||.+++++.+++++++++
T Consensus 2 ~WK~aF~~Lla~~l~~~~~~ 21 (187)
T PF09911_consen 2 WWKWAFLILLALNLAFVIVV 21 (187)
T ss_pred hHHHHHHHHHHHHHHHHhhe
Confidence 56776665444433333333
No 168
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=27.39 E-value=1.5e+02 Score=29.02 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHH
Q psy2301 227 LFKDLSHMVVHQGTILDRIDYNVERTEIEVK 257 (350)
Q Consensus 227 iF~dLa~LV~eQge~IDrId~Nve~a~~~v~ 257 (350)
+|-++..-....||.=.++|.-...+.+..+
T Consensus 325 ~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~ 355 (399)
T TIGR02120 325 LFPPLLVHMIASGEKSGQLETMLERAADNQE 355 (399)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 4555555556666666666666665555544
No 169
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=27.31 E-value=1.4e+02 Score=22.76 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=4.6
Q ss_pred HHHHHHHHHhc
Q psy2301 262 QLAKAERYHRK 272 (350)
Q Consensus 262 eL~kA~~~qk~ 272 (350)
||.+-..+-++
T Consensus 21 QL~qlVsrN~s 31 (84)
T PF06143_consen 21 QLEQLVSRNRS 31 (84)
T ss_pred HHHHHHHhChH
Confidence 44444444444
No 170
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=27.05 E-value=80 Score=27.01 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=5.3
Q ss_pred HhccchhHHHHH
Q psy2301 270 HRKNRKMACILC 281 (350)
Q Consensus 270 qk~~rk~~~i~~ 281 (350)
.++-|+.+++.+
T Consensus 9 ~~~e~rFr~~g~ 20 (155)
T PF11812_consen 9 YRAERRFRAYGL 20 (155)
T ss_pred HHHHHHHHHHHH
Confidence 334444455443
No 171
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=26.43 E-value=23 Score=29.27 Aligned_cols=6 Identities=17% Similarity=0.911 Sum_probs=0.0
Q ss_pred hccchh
Q psy2301 271 RKNRKM 276 (350)
Q Consensus 271 k~~rk~ 276 (350)
++++|+
T Consensus 3 ~~~~rl 8 (131)
T PF03100_consen 3 RRKKRL 8 (131)
T ss_dssp ------
T ss_pred cceeeh
Confidence 333343
No 172
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=26.34 E-value=1.6e+02 Score=24.37 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=18.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q psy2301 264 AKAERYHRKNRKMACILCLASTTLILLILLILD 296 (350)
Q Consensus 264 ~kA~~~qk~~rk~~~i~~li~iIiiiii~liv~ 296 (350)
+|..++.|+-+++.|..++++.++++.+...+.
T Consensus 11 ~K~e~l~k~~~~~~~~~l~~~~~~~~y~~~~~~ 43 (130)
T PF10864_consen 11 EKWERLKKQHLFWQWLFLFSLFLFFIYFYIKVI 43 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666665555555544444443
No 173
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=26.34 E-value=2.1e+02 Score=28.06 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHH
Q psy2301 216 HIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVK 257 (350)
Q Consensus 216 ~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~ 257 (350)
.+..++..-...|-++..-...-||.==++++......++.+
T Consensus 112 sls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~ 153 (399)
T TIGR02120 112 SLADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLE 153 (399)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 344455544455555544444444444444444444444443
No 174
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=26.32 E-value=2.4e+02 Score=26.83 Aligned_cols=79 Identities=11% Similarity=0.110 Sum_probs=54.0
Q ss_pred CCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 13 RGGIGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQL 92 (350)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~ 92 (350)
-|+|=++++--..+..+.=+..+++++.+|..+.+.++++........ .....+..+......++.++.+++..
T Consensus 64 AIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~~~------~~~~~~~~i~~V~~~ik~LL~rId~a 137 (302)
T PF05508_consen 64 AIDLIELIAARGNTSLESALPLTKDLRREIDSFDERLEEAAEKEELSK------SSENQKESIKKVERYIKDLLARIDDA 137 (302)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------CcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455566777788899999999999988888877554311 12223457888888888888888877
Q ss_pred HHHHH
Q psy2301 93 IQKIK 97 (350)
Q Consensus 93 I~~l~ 97 (350)
|--|.
T Consensus 138 iPlin 142 (302)
T PF05508_consen 138 IPLIN 142 (302)
T ss_pred cchHH
Confidence 76554
No 175
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=26.21 E-value=1.9e+02 Score=26.10 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=20.6
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHH
Q psy2301 238 QGTILDRIDYNVERTEIEVKQGYQQLA 264 (350)
Q Consensus 238 Qge~IDrId~Nve~a~~~v~~g~~eL~ 264 (350)
=|+-++|+|..+.++..++.+....|.
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~~qs~l~ 39 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKKSQSILS 39 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999988888888777766664
No 176
>KOG3894|consensus
Probab=26.10 E-value=5.9e+02 Score=24.40 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHhhhhhH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----cc
Q psy2301 206 QARIRSQEVDHIVKS----IVDLNHLFKDLSHMVVHQGTI---LDRIDYNVERTEIEVKQGYQQLAKAERYHRK----NR 274 (350)
Q Consensus 206 ~i~eR~~eI~~IE~s----I~EL~~iF~dLa~LV~eQge~---IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~----~r 274 (350)
.++--+.|-++|... +.++-++=+.|-.++.-|..+ |-.=|.||+-..+++..+..+++.+++.-++ ++
T Consensus 212 ~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~ 291 (316)
T KOG3894|consen 212 QVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNG 291 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcc
Confidence 444444444444433 335555555555555555544 4445889999999999999999988876544 44
Q ss_pred hhHHHHHHHHHHH
Q psy2301 275 KMACILCLASTTL 287 (350)
Q Consensus 275 k~~~i~~li~iIi 287 (350)
+..-|++..++|.
T Consensus 292 ~~r~~~lf~llvl 304 (316)
T KOG3894|consen 292 GLRVFLLFFLLVL 304 (316)
T ss_pred cchhHHHHHHHHH
Confidence 6677776555443
No 177
>PHA03049 IMV membrane protein; Provisional
Probab=26.09 E-value=89 Score=22.66 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy2301 280 LCLASTTLILLIL 292 (350)
Q Consensus 280 ~~li~iIiiiii~ 292 (350)
+++|||+|+.+|+
T Consensus 7 l~iICVaIi~lIv 19 (68)
T PHA03049 7 LVIICVVIIGLIV 19 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 178
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.08 E-value=3.6e+02 Score=21.95 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccCCCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 25 SRAAPIWTDALEETQYALPRLENKLKELEKLQES----HLLRPTL-DESTEQETKIELLTQEISRMFNGCHQLIQKIKH 98 (350)
Q Consensus 25 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~----~l~~~~~-~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~ 98 (350)
..+...+...+......+..++..+..|..-.+. ++..... ++......++..+..++..+-.+....|.-++.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556667777777777777777766443332 1110011 111122334555555555555555555554443
No 179
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=25.87 E-value=90 Score=22.73 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy2301 280 LCLASTTLILLI 291 (350)
Q Consensus 280 ~~li~iIiiiii 291 (350)
+++|||+++.+|
T Consensus 7 Li~ICVaii~lI 18 (68)
T PF05961_consen 7 LIIICVAIIGLI 18 (68)
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 180
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=25.84 E-value=2.5e+02 Score=25.63 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=4.0
Q ss_pred hccchhHHHH
Q psy2301 271 RKNRKMACIL 280 (350)
Q Consensus 271 k~~rk~~~i~ 280 (350)
++++|..|++
T Consensus 34 ~rs~k~aw~v 43 (229)
T PRK13865 34 RRLSRVLAAV 43 (229)
T ss_pred HHHHHHHHHH
Confidence 3344434443
No 181
>KOG0809|consensus
Probab=25.66 E-value=5.9e+02 Score=24.23 Aligned_cols=87 Identities=17% Similarity=0.225 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q psy2301 202 DNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILC 281 (350)
Q Consensus 202 ~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~ 281 (350)
....++++=.+.|.++..-..||..|-.|=++.|.-=+--|+++-..++.|...+.+|. ...+.-++-...+..++
T Consensus 215 erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe----~yQk~~~k~~~i~~L~l 290 (305)
T KOG0809|consen 215 EREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE----RYQKRNKKMKVILMLTL 290 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH----HHHhcCCceEehHHHHH
Confidence 34566777778888888888888888888888888888888888888888888888775 45666667676555444
Q ss_pred HHHHHHHHHHH
Q psy2301 282 LASTTLILLIL 292 (350)
Q Consensus 282 li~iIiiiii~ 292 (350)
+|+++++++|+
T Consensus 291 ~ii~llvllil 301 (305)
T KOG0809|consen 291 LIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHHHh
Confidence 44444544443
No 182
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.58 E-value=6.3e+02 Score=24.54 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------
Q psy2301 29 PIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSS------- 101 (350)
Q Consensus 29 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~------- 101 (350)
+......-.++.-+.+.....+.|+.+-.+ .-+++...+-+++++..+++..-.+.+..-+++.....
T Consensus 109 qkL~nqL~~~~~vf~k~k~~~q~LE~li~~-----~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 109 QKLKNQLFHVREVFMKTKGDIQHLEGLIRH-----LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 102 -----DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQS 135 (350)
Q Consensus 102 -----~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~ 135 (350)
-.....-.+.|+-.+..|..|.+++|.++++..+
T Consensus 184 eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 184 EYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 183
>PHA03332 membrane glycoprotein; Provisional
Probab=25.52 E-value=1e+03 Score=26.98 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHH
Q psy2301 33 DALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLA 112 (350)
Q Consensus 33 ~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir 112 (350)
..+.+++..|...++.+.+++.-..+.-. .|.+++....+.++..+.+|..|++..+ ...-..
T Consensus 891 aaia~mksaIg~tNaAV~~lsDai~klGn------------ti~kisatl~~nI~avNgRIs~Led~VN-----~r~~~v 953 (1328)
T PHA03332 891 AATAEMASKIGGLNARVDKTSDVITKLGD------------TIAKISATLDNNIRAVNGRVSDLEDQVN-----LRFLAV 953 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHhhHHHhcccHHHHHHHHH-----HHHHHH
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q psy2301 113 YNVISSLVTN-------LQQKSIQFRSMQSSYLN 139 (350)
Q Consensus 113 ~n~~~~L~~k-------l~~i~~~fq~~q~~~~~ 139 (350)
...+++|+.+ +.+-+.+-...+.-|.+
T Consensus 954 ~~~intLA~ql~~~~~~~N~~ie~~~aaalyYQQ 987 (1328)
T PHA03332 954 ATNFNTLATQLKELGTTTNERIEEVMAAALYYQQ 987 (1328)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
No 184
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=25.23 E-value=9.1e+02 Score=26.31 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhHHHH-HHhhHHHHHHHHHHH
Q psy2301 218 VKSIVDLNHLFKDLSHMVVHQGTILDR-IDYNVERTEIEVKQG 259 (350)
Q Consensus 218 E~sI~EL~~iF~dLa~LV~eQge~IDr-Id~Nve~a~~~v~~g 259 (350)
...+.++...-.+++.-+..+.+.+-. ++.++.....++++.
T Consensus 356 ~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~ 398 (806)
T PF05478_consen 356 SDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERS 398 (806)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433 334444444444443
No 185
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=25.05 E-value=79 Score=22.82 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhcc-cccc
Q psy2301 287 LILLILLILDKESL-FTYR 304 (350)
Q Consensus 287 iiiii~liv~k~~~-~~~~ 304 (350)
+=++|.++|+|++. |.|+
T Consensus 27 iKLfImF~vLK~FfFp~~l 45 (64)
T PF14899_consen 27 IKLFIMFAVLKLFFFPNFL 45 (64)
T ss_pred HHHHHHHHHHHHHHCcchh
Confidence 33555566666653 4444
No 186
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=24.97 E-value=1.6e+02 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQES 58 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~ 58 (350)
.|.|.+..+++..++++++.+++.+.....+
T Consensus 68 td~~~e~ie~i~~dl~ei~e~~~~i~e~~~~ 98 (101)
T COG3388 68 TDDFPEFIEEIIGDLSEINEEAENIEEDVAK 98 (101)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999998887665
No 187
>PTZ00478 Sec superfamily; Provisional
Probab=24.95 E-value=2.1e+02 Score=21.69 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=33.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 243 DRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 243 DrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv 295 (350)
|.+++-++...+-++.+.+=++++.+=-++--...+....++++++-++..+|
T Consensus 14 ~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~I 66 (81)
T PTZ00478 14 NPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSI 66 (81)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33666777777778888777766655444444556666666666666655554
No 188
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=24.89 E-value=2.8e+02 Score=20.26 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESH 59 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~ 59 (350)
...-.+..+.+...|......++.+.......
T Consensus 36 ~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 36 LEEQLKKHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555443
No 189
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.66 E-value=8e+02 Score=25.46 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNR 274 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~r 274 (350)
++..++..+.+...-|.++.....+-.+-++.|+.........+..-.+.-..|++.-...+
T Consensus 363 ~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~ 424 (569)
T PRK04778 363 QYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR 424 (569)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566666666666666666666666666666666666655555544433
No 190
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.62 E-value=3.5e+02 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2301 37 ETQYALPRLENKLKELEKLQE 57 (350)
Q Consensus 37 ~i~~~i~~i~~~i~~L~~l~~ 57 (350)
.+...+......+..++.-.+
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555444433
No 191
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=24.23 E-value=1.5e+02 Score=24.69 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=19.5
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 267 ERYHRKNRKMACILCLASTTLILLILLILDKE 298 (350)
Q Consensus 267 ~~~qk~~rk~~~i~~li~iIiiiii~liv~k~ 298 (350)
.+|++..|++...-.+..+.+++++.+.|+|+
T Consensus 119 ~~y~~~~~~~~~~g~~~~~~~~~i~~LMV~KP 150 (150)
T PF10027_consen 119 PEYKRLFRRWFILGWIAFLLLVVIVVLMVFKP 150 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 35555666655554455555667777777764
No 192
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=24.16 E-value=70 Score=31.43 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2301 277 ACILCLASTTLILLILLIL 295 (350)
Q Consensus 277 ~~i~~li~iIiiiii~liv 295 (350)
+|.-+.+|+++.++++|+|
T Consensus 298 ~~~r~~~c~~~~i~~lL~i 316 (387)
T PF12751_consen 298 WFSRFASCIYLSILLLLVI 316 (387)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 4444444444444444444
No 193
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=23.92 E-value=26 Score=29.64 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHH
Q psy2301 211 SQEVDHIVKSIVD 223 (350)
Q Consensus 211 ~~eI~~IE~sI~E 223 (350)
.+++..++..+..
T Consensus 111 ~~~~~~~~~~l~~ 123 (183)
T PF01105_consen 111 KEHLDPLEESLEK 123 (183)
T ss_dssp -------------
T ss_pred hhhhhhhHHHHHH
Confidence 3445555554433
No 194
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=23.81 E-value=1.7e+02 Score=30.10 Aligned_cols=52 Identities=17% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHH--HHHHhhHHHHHHHHHHHHHHHH
Q psy2301 209 IRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTIL--DRIDYNVERTEIEVKQGYQQLA 264 (350)
Q Consensus 209 eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~I--DrId~Nve~a~~~v~~g~~eL~ 264 (350)
-|..-++.+.+++.-|.. |+.|+..-..|+ |+|-.+|..|.+.+.++...+.
T Consensus 394 ~r~r~~~~l~~a~~TL~S----L~~L~~~i~~i~I~~~V~~~v~~al~~l~~a~~~l~ 447 (517)
T PF10510_consen 394 LRRRTVENLASASSTLQS----LAKLLDSIPNIVIPDEVAERVQQALEALEQAIDALN 447 (517)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555443 344555544443 6667777777777776666554
No 195
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=23.80 E-value=3e+02 Score=26.15 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHH
Q psy2301 225 NHLFKDLSHMVVHQGTILDRIDYNVERTEIEVK 257 (350)
Q Consensus 225 ~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~ 257 (350)
+.+|..+..=|.+-.+-|++|..-++.++..|+
T Consensus 35 ~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~ 67 (297)
T PF11945_consen 35 NDIFSRISARVERNRERLQAIQQRIEVAQAKIE 67 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666555555554
No 196
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.79 E-value=1e+02 Score=26.45 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---cccccchhh
Q psy2301 278 CILCLASTTLILLILLILDKE---SLFTYRPIY 307 (350)
Q Consensus 278 ~i~~li~iIiiiii~liv~k~---~~~~~~~~~ 307 (350)
|+++++++.+++...|++..+ ..+.|.|+=
T Consensus 10 ~~v~~~~~~~~~a~~Lv~~al~~n~~yF~tpsE 42 (155)
T PRK13159 10 WLVIGVLTAAALAVTLIVLALQRNMSYLFTPSQ 42 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCceEEECHHH
Confidence 444444444444445554433 224445543
No 197
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=23.02 E-value=1.7e+02 Score=21.56 Aligned_cols=27 Identities=4% Similarity=0.169 Sum_probs=18.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy2301 240 TILDRIDYNVERTEIEVKQGYQQLAKA 266 (350)
Q Consensus 240 e~IDrId~Nve~a~~~v~~g~~eL~kA 266 (350)
.-|++|.++|.+|-.|++.|..-|..+
T Consensus 8 DNVEkLQ~mi~nTieN~~eAee~l~~~ 34 (70)
T TIGR03090 8 DNVEKLQQMIDNTIENMEEANEYIEAH 34 (70)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777777766644
No 198
>PHA03046 Hypothetical protein; Provisional
Probab=22.94 E-value=4e+02 Score=22.11 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=36.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVK 257 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~ 257 (350)
-+|+.+--.+.-|..+|+....--..-+..|+|+|.+.+....++-
T Consensus 84 ~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~Ml 129 (142)
T PHA03046 84 MDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNMI 129 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888888888888889999999999887766553
No 199
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=22.26 E-value=4.1e+02 Score=21.56 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy2301 224 LNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAER 268 (350)
Q Consensus 224 L~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~ 268 (350)
|.+.|..|..|++.=..-++.+|..---|-..+..|..+|++..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 456677777666654444566777777788888888888876544
No 200
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=22.22 E-value=2.4e+02 Score=23.92 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=8.3
Q ss_pred hhhhhHHHHHHhhHHH
Q psy2301 236 VHQGTILDRIDYNVER 251 (350)
Q Consensus 236 ~eQge~IDrId~Nve~ 251 (350)
++|..-+-+.+-..++
T Consensus 68 EQQe~kvska~wdteq 83 (154)
T PF14914_consen 68 EQQEVKVSKAQWDTEQ 83 (154)
T ss_pred HHHHHHHhHHhhhhhh
Confidence 4455555555555444
No 201
>PHA02902 putative IMV membrane protein; Provisional
Probab=22.22 E-value=1.5e+02 Score=21.36 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q psy2301 279 ILCLASTTLILLILLILDKESLFT 302 (350)
Q Consensus 279 i~~li~iIiiiii~liv~k~~~~~ 302 (350)
.+++++++|++.++.++-+-..++
T Consensus 7 vi~~v~v~Ivclliya~YrR~kci 30 (70)
T PHA02902 7 VILAVIVIIFCLLIYAAYKRYKCI 30 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555555555555555554433
No 202
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=22.13 E-value=1.3e+02 Score=22.69 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=17.6
Q ss_pred HHHHHHhccchhHHHHHHHHHHHH
Q psy2301 265 KAERYHRKNRKMACILCLASTTLI 288 (350)
Q Consensus 265 kA~~~qk~~rk~~~i~~li~iIii 288 (350)
+++.|=|++++++++++++..++.
T Consensus 2 ~~~~yWr~n~rl~~~lL~iW~vvs 25 (81)
T PF13937_consen 2 PARAYWRKNLRLIAILLAIWFVVS 25 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888777765543
No 203
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.95 E-value=8.5e+02 Score=24.79 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
.+.+=.+.+.+|...+.++.+.+.+++.-+.+|...++.|..++++...-+++..
T Consensus 432 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 486 (553)
T PRK15048 432 LVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNA 486 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456778899999999999999999999999999999998888777665433
No 204
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=21.89 E-value=8.5e+02 Score=24.77 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 112 AYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREE 146 (350)
Q Consensus 112 r~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~ 146 (350)
.++-..+|.-.|+.+-..|...|..|..-+..+.+
T Consensus 409 sr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk 443 (527)
T PF15066_consen 409 SRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK 443 (527)
T ss_pred HHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Confidence 34566778888999999999999999887776543
No 205
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=21.79 E-value=1.5e+02 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHH
Q psy2301 259 GYQQLAKAERYHRKNRKMACILCLASTTL 287 (350)
Q Consensus 259 g~~eL~kA~~~qk~~rk~~~i~~li~iIi 287 (350)
|--|..=|++.+++..+..|+.+++++++
T Consensus 77 ~lmEm~l~rkkk~k~~~~~~~~~ii~~vl 105 (110)
T PF07457_consen 77 GLMEMALARKKKGKPTKILWWLFIILLVL 105 (110)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 44566666777666666666666554433
No 206
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=21.66 E-value=1.1e+03 Score=25.81 Aligned_cols=26 Identities=0% Similarity=0.031 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 74 KIELLTQEISRMFNGCHQLIQKIKHQ 99 (350)
Q Consensus 74 ~I~~l~~~I~~~~~~i~~~I~~l~~~ 99 (350)
+.+.....+......+...+..++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~l~~~ 99 (968)
T TIGR02956 74 QRQAIGKKLTLQSETLLHSLKALGEL 99 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44445555555556666666655543
No 207
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=21.66 E-value=94 Score=23.61 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhcc
Q psy2301 288 ILLILLILDKESL 300 (350)
Q Consensus 288 iiii~liv~k~~~ 300 (350)
+.+-++.+.|++.
T Consensus 29 v~~AlL~~IqLC~ 41 (82)
T PF02723_consen 29 VCIALLQLIQLCF 41 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444455544
No 208
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=21.62 E-value=43 Score=28.46 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhccch
Q psy2301 259 GYQQLAKAERYHRKNRK 275 (350)
Q Consensus 259 g~~eL~kA~~~qk~~rk 275 (350)
|-.-|.|=.+.+-+.+|
T Consensus 115 GyDsLLKkKEae~kr~K 131 (159)
T PF06789_consen 115 GYDSLLKKKEAELKRSK 131 (159)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45555555555544444
No 209
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.58 E-value=2.6e+02 Score=18.74 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=5.0
Q ss_pred HHHHHHHhccc
Q psy2301 264 AKAERYHRKNR 274 (350)
Q Consensus 264 ~kA~~~qk~~r 274 (350)
+.+.++=++++
T Consensus 6 ~~~~~~f~~nk 16 (56)
T PF12911_consen 6 KDAWRRFRRNK 16 (56)
T ss_pred HHHHHHHHhCc
Confidence 34444444444
No 210
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.57 E-value=2.9e+02 Score=19.29 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2301 205 AQARIRSQEVDHIVKSIVDLNHLFK 229 (350)
Q Consensus 205 ~~i~eR~~eI~~IE~sI~EL~~iF~ 229 (350)
.+.++=.+++.+|++++.+|-.||.
T Consensus 21 ~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 21 KENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666777777777766664
No 211
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=21.53 E-value=2.1e+02 Score=20.48 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 250 ERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 250 e~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv 295 (350)
+...+.++...+=+++|++--++--+..+...+++++++-++.++|
T Consensus 4 e~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~I 49 (61)
T TIGR00327 4 EAPVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYII 49 (61)
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777776665544444556666666666666665554
No 212
>KOG2546|consensus
Probab=21.30 E-value=2.7e+02 Score=27.88 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHhccchhHHHHHH
Q psy2301 208 RIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEV-----KQGYQQLAKAERYHRKNRKMACILCL 282 (350)
Q Consensus 208 ~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v-----~~g~~eL~kA~~~qk~~rk~~~i~~l 282 (350)
+.|..+.+.++.--..||.|..+.-.|+..|...|-+.|.|++.....| +-|..++......+...|.-++|.+.
T Consensus 51 etk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~ 130 (483)
T KOG2546|consen 51 ETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPA 130 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheecchhhhhhhccceeeccccccccceeccc
Confidence 3455677777777789999999999999999999999999999887665 34566666666666666766666655
Q ss_pred HHH
Q psy2301 283 AST 285 (350)
Q Consensus 283 i~i 285 (350)
.+.
T Consensus 131 nl~ 133 (483)
T KOG2546|consen 131 NLE 133 (483)
T ss_pred cCC
Confidence 443
No 213
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=21.15 E-value=2.7e+02 Score=27.30 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHH
Q psy2301 216 HIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEV 256 (350)
Q Consensus 216 ~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v 256 (350)
.+.+++.+.. .|-.+..-....||---+.|.-.+...+..
T Consensus 314 sls~al~~~~-~fp~~~~~~i~~GE~sG~L~~~L~~la~~~ 353 (399)
T PRK10573 314 PLWLALKNHP-LFPPLCLQLVRVGEESGSLDLMLENLAHWH 353 (399)
T ss_pred cHHHHHhhCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3444554444 555555445555555555555444444433
No 214
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=21.14 E-value=2.4e+02 Score=20.68 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESHL 60 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l 60 (350)
.++|...+..++..|+.|+.++-.|.+..++..
T Consensus 22 d~e~~atls~i~eli~~IN~kIl~lNKKsKKn~ 54 (71)
T PF06015_consen 22 DSEFAATLSAIKELISQINLKILALNKKSKKNT 54 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Confidence 678999999999999999999999999988853
No 215
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=21.04 E-value=1.1e+03 Score=25.84 Aligned_cols=28 Identities=11% Similarity=0.348 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 121 TNLQQKSIQFRSMQSSYLNKIKTREERS 148 (350)
Q Consensus 121 ~kl~~i~~~fq~~q~~~~~~~k~~~~R~ 148 (350)
..++.+|+++|+..++|.+.+.++..+.
T Consensus 492 eEI~rLm~eLR~A~~~ym~~LAeq~~~~ 519 (820)
T PF13779_consen 492 EEIARLMQELREAMQDYMQALAEQAQRN 519 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhC
Confidence 4677888889998888988888776654
No 216
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=20.93 E-value=6.2e+02 Score=26.04 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 24 DSRAAPIWTDALEETQYALPRLENKLKELEKL 55 (350)
Q Consensus 24 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l 55 (350)
..+..|+|++..+.....++..+.+++.|+.+
T Consensus 401 ~vG~dpe~~~~l~~lt~~~~~~ee~l~~Lt~~ 432 (543)
T COG1315 401 DVGMDPEIVERLKELTEEISLHEERLKKLTKL 432 (543)
T ss_pred EeccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888887777777766666665543
No 217
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.92 E-value=5.3e+02 Score=22.00 Aligned_cols=61 Identities=8% Similarity=0.115 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhH-HHHHHhhHHHHHHHHHHHHHHHH
Q psy2301 204 AAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTI-LDRIDYNVERTEIEVKQGYQQLA 264 (350)
Q Consensus 204 ~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~-IDrId~Nve~a~~~v~~g~~eL~ 264 (350)
.+.+..=.+.|+.|......|.+=|+-+...-.+|.+. ++.+..||..-..-++.+.+.+.
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~ 139 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLR 139 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 34445555666777777777888888888888888888 99999999888777777666554
No 218
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.64 E-value=1.6e+02 Score=24.82 Aligned_cols=8 Identities=0% Similarity=0.098 Sum_probs=3.1
Q ss_pred hhhHHHHH
Q psy2301 238 QGTILDRI 245 (350)
Q Consensus 238 Qge~IDrI 245 (350)
+|..++..
T Consensus 80 ~~~~v~~~ 87 (145)
T PF10661_consen 80 SDNTVKET 87 (145)
T ss_pred ccchHHHH
Confidence 33344433
No 219
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.63 E-value=3.1e+02 Score=19.23 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=16.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2301 240 TILDRIDYNVERTEIEVKQGYQQLAKAERY 269 (350)
Q Consensus 240 e~IDrId~Nve~a~~~v~~g~~eL~kA~~~ 269 (350)
.-||.+...|......+..|..|-..|..+
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555666555555543
No 220
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=20.57 E-value=1.9e+02 Score=29.91 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhccchhHH
Q psy2301 258 QGYQQLAKAERYHRKNRKMAC 278 (350)
Q Consensus 258 ~g~~eL~kA~~~qk~~rk~~~ 278 (350)
+...++....+.-.+.||..+
T Consensus 7 ~~~~~~~~~~~~l~~~qk~~l 27 (542)
T PRK06007 7 ELMEKLKEFLQKLSKKRKIAL 27 (542)
T ss_pred HHHHHHHHHHHhcChhhHHHH
Confidence 334445544444444444433
No 221
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.56 E-value=2.6e+02 Score=19.82 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=8.8
Q ss_pred HHHHhccchhHHHHHHHH
Q psy2301 267 ERYHRKNRKMACILCLAS 284 (350)
Q Consensus 267 ~~~qk~~rk~~~i~~li~ 284 (350)
.+.+|+-|...++.++++
T Consensus 34 ~ker~R~r~~~~~~~li~ 51 (64)
T COG4068 34 NKERKRQRNFMILMFLIL 51 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554433
No 222
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.49 E-value=8.5e+02 Score=24.21 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHh----hhhhHHHHHHhhHHHHHHHHHHHH-HH
Q psy2301 193 QQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNH-----LFKDLSHMVV----HQGTILDRIDYNVERTEIEVKQGY-QQ 262 (350)
Q Consensus 193 qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~-----iF~dLa~LV~----eQge~IDrId~Nve~a~~~v~~g~-~e 262 (350)
+....-+ ...+++-+.|.+-+.+.-....|+|+ +=++|+.|=+ +=-|-.-.|.++++..++.+.+=. .+
T Consensus 243 ~~e~~~~-~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~ 321 (395)
T PF10267_consen 243 QREYQFI-LEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQ 321 (395)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccccchhhhh
Q psy2301 263 LAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQ 309 (350)
Q Consensus 263 L~kA~~~qk~~rk~~~i~~li~iIiiiii~liv~k~~~~~~~~~~~~ 309 (350)
+.++...---..-+.. -+++-++=+++-++.|+-.++.|-+-+-+|
T Consensus 322 ~Qq~~q~e~~~n~~~r-~~l~k~inllL~l~~vlLv~vSt~~~~~~P 367 (395)
T PF10267_consen 322 QQQVVQLEGTENSRAR-ALLGKLINLLLTLLTVLLVFVSTVANCPLP 367 (395)
T ss_pred hhhhhhhcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
No 223
>PRK10404 hypothetical protein; Provisional
Probab=20.38 E-value=4.3e+02 Score=20.76 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHHHHHHH--------HHHHHHHHHHHHHhccchh
Q psy2301 241 ILDRIDYNVERTEIEVK--------QGYQQLAKAERYHRKNRKM 276 (350)
Q Consensus 241 ~IDrId~Nve~a~~~v~--------~g~~eL~kA~~~qk~~rk~ 276 (350)
+=++++..+..+.+.+. ++..-...+..|.+.+.|.
T Consensus 39 lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~ 82 (101)
T PRK10404 39 LKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQ 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 33566666666665433 3444455556666666554
No 224
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=20.33 E-value=2.4e+02 Score=29.40 Aligned_cols=7 Identities=57% Similarity=0.786 Sum_probs=3.1
Q ss_pred cccccch
Q psy2301 299 SLFTYRP 305 (350)
Q Consensus 299 ~~~~~~~ 305 (350)
.-+.|-|
T Consensus 49 ~~p~Y~~ 55 (552)
T PRK07193 49 SSQGYRP 55 (552)
T ss_pred cCCCeee
Confidence 3344444
No 225
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.28 E-value=3.6e+02 Score=19.79 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=7.1
Q ss_pred HHHHHhhHHHHHH
Q psy2301 242 LDRIDYNVERTEI 254 (350)
Q Consensus 242 IDrId~Nve~a~~ 254 (350)
+|.||.-|+.+..
T Consensus 21 Ld~iEeKVEf~~~ 33 (70)
T TIGR01149 21 LDEIEEKVEFVNG 33 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 4556665555543
No 226
>PHA02849 putative transmembrane protein; Provisional
Probab=20.22 E-value=1e+02 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccch
Q psy2301 277 ACILCLASTTLILLILLILDKESLFTYRP 305 (350)
Q Consensus 277 ~~i~~li~iIiiiii~liv~k~~~~~~~~ 305 (350)
...++.+++++++|++.+++-+..++|.-
T Consensus 16 ~v~vi~v~v~vI~i~~flLlyLvkws~v~ 44 (82)
T PHA02849 16 AVTVILVFVLVISFLAFMLLYLIKWSYVI 44 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777776666666654
No 227
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.18 E-value=2.1e+02 Score=21.51 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2301 208 RIRSQEVDHIVKSIVDLNHLFKDLSHMV 235 (350)
Q Consensus 208 ~eR~~eI~~IE~sI~EL~~iF~dLa~LV 235 (350)
+++.++|+.++..+.-..++..++..+|
T Consensus 55 eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 55 EEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444666777777777777777666554
No 228
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=20.17 E-value=4.5e+02 Score=23.37 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHH
Q psy2301 207 ARIRSQEVDHIVKSIVDL 224 (350)
Q Consensus 207 i~eR~~eI~~IE~sI~EL 224 (350)
.++-++++.+.+..|.++
T Consensus 103 w~~W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 103 WQQWEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHH
Confidence 344666777666665544
No 229
>PHA03044 IMV membrane protein; Provisional
Probab=20.14 E-value=2.6e+02 Score=20.63 Aligned_cols=33 Identities=9% Similarity=0.227 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESHL 60 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l 60 (350)
.++|...+..|+..|+.|+.++-.|.+..++..
T Consensus 24 d~efaAtls~ikElis~IN~kil~iNKKsKKn~ 56 (74)
T PHA03044 24 DSEFSATLSTIKEIISQINLKVLSINKKSKKNF 56 (74)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 678999999999999999999999999988853
Done!