Query psy2301
Match_columns 350
No_of_seqs 233 out of 1461
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:14:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 8.5E-41 2.9E-45 310.0 16.0 240 20-279 22-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 2.5E-37 8.7E-42 288.9 12.0 238 18-274 33-279 (279)
3 3hd7_B Syntaxin-1A; membrane p 100.0 1.3E-28 4.4E-33 197.4 13.9 95 201-295 10-104 (109)
4 1fio_A SSO1 protein; four heli 100.0 1.3E-27 4.4E-32 211.9 15.8 192 28-239 4-196 (196)
5 1jth_B Syntaxin 1A; coiled-coi 99.9 2E-25 6.9E-30 167.9 9.8 76 204-279 2-77 (77)
6 2nps_B Syntaxin 13, vesicle-as 99.9 1.1E-23 3.9E-28 155.8 9.8 70 208-277 2-71 (71)
7 3c98_B Syntaxin-1A; protein co 99.9 5.4E-23 1.8E-27 190.3 15.1 238 19-279 33-279 (279)
8 1sfc_B Protein (syntaxin 1A), 99.9 1.5E-22 5E-27 154.3 9.2 74 201-274 10-83 (83)
9 3b5n_B Protein SSO1; snare com 99.9 4.9E-22 1.7E-26 146.1 10.5 68 204-271 2-69 (69)
10 1n7s_B Syntaxin 1A; neuronal s 99.8 8.3E-21 2.8E-25 139.1 8.3 66 203-268 3-68 (68)
11 1gl2_B Syntaxin 7; membrane pr 99.8 1.2E-20 4.1E-25 136.9 7.8 64 205-268 2-65 (65)
12 1s94_A S-syntaxin; three helix 99.7 6.8E-17 2.3E-21 141.0 8.8 136 18-155 27-167 (180)
13 1ez3_A Syntaxin-1A; three heli 99.6 3.5E-15 1.2E-19 122.7 14.1 120 24-145 3-126 (127)
14 2dnx_A Syntaxin-12; snare, HAB 98.8 2.5E-07 8.7E-12 75.8 17.1 116 26-145 7-122 (130)
15 2nps_D Syntaxin-6; vesicle fus 97.8 6.4E-05 2.2E-09 56.3 7.5 68 206-273 13-80 (82)
16 1gl2_D Syntaxin 8, vesicle tra 97.6 0.00016 5.6E-09 51.6 7.0 60 206-265 3-62 (65)
17 1n7s_D SNAP-25A; neuronal snar 97.6 0.00053 1.8E-08 49.0 9.2 57 209-265 7-63 (66)
18 1sfc_D Protein (SNAP-25B), pro 97.5 0.00098 3.4E-08 50.4 9.7 58 208-265 25-82 (87)
19 1hs7_A Syntaxin VAM3; UP-and-D 97.4 0.0033 1.1E-07 48.3 12.1 87 36-143 6-93 (97)
20 3hd7_B Syntaxin-1A; membrane p 97.4 0.0072 2.4E-07 47.5 14.3 87 202-292 18-104 (109)
21 1l4a_D S-SNAP25 fusion protein 97.2 0.0011 3.9E-08 50.0 7.9 57 209-265 27-83 (87)
22 3b5n_D Protein transport prote 97.2 0.0027 9.2E-08 45.0 8.7 56 210-265 8-63 (64)
23 3hd7_A Vesicle-associated memb 96.9 0.02 7E-07 43.4 12.0 72 212-286 5-78 (91)
24 1nhl_A Synaptosomal-associated 96.7 0.0092 3.1E-07 40.7 7.8 47 218-264 6-52 (54)
25 1n7s_C SNAP-25A; neuronal snar 96.6 0.039 1.3E-06 40.6 11.1 55 211-265 22-76 (79)
26 3b5n_C Protein transport prote 96.1 0.063 2.1E-06 38.6 9.5 45 225-269 25-69 (70)
27 4dnd_A Syntaxin-10, SYN10; str 95.5 0.14 4.9E-06 41.3 10.7 108 13-129 12-127 (130)
28 1l4a_C S-SNAP25 fusion protein 95.4 0.057 1.9E-06 40.1 7.4 53 212-264 27-79 (83)
29 2kog_A Vesicle-associated memb 93.5 0.009 3.1E-07 47.7 -1.1 39 213-251 34-72 (119)
30 1gl2_C VTI1B, vesicle transpor 90.9 1.7 5.7E-05 30.4 8.3 52 213-264 10-61 (65)
31 2c5k_T Syntaxin TLG1, T-snare 90.8 3.5 0.00012 31.2 10.7 87 29-131 6-92 (95)
32 1n7s_B Syntaxin 1A; neuronal s 82.0 11 0.00037 26.3 9.3 54 206-259 13-66 (68)
33 3ghg_A Fibrinogen alpha chain; 80.8 17 0.0006 35.6 12.0 26 72-97 52-77 (562)
34 3b5n_B Protein SSO1; snare com 80.7 12 0.00042 26.1 9.2 55 206-260 11-65 (69)
35 2ke4_A CDC42-interacting prote 79.5 13 0.00043 28.2 8.6 63 23-85 7-74 (98)
36 2nps_B Syntaxin 13, vesicle-as 78.4 15 0.00051 25.8 8.4 63 205-267 6-68 (71)
37 1gl2_B Syntaxin 7; membrane pr 77.0 15 0.00053 25.3 8.2 55 206-260 10-64 (65)
38 2nps_C Vesicle transport throu 74.4 22 0.00075 25.8 10.1 62 208-269 15-76 (81)
39 1jth_B Syntaxin 1A; coiled-coi 73.0 23 0.00077 25.3 9.5 65 204-268 9-73 (77)
40 1sfc_A VAMP 2, protein (synapt 72.1 25 0.00086 26.3 8.6 41 212-252 30-70 (96)
41 1sfc_B Protein (syntaxin 1A), 67.2 33 0.0011 24.8 9.2 60 203-262 19-78 (83)
42 3c98_B Syntaxin-1A; protein co 63.5 13 0.00046 32.5 6.4 223 29-269 50-276 (279)
43 1n7s_A Vesicle-associated memb 63.3 33 0.0011 23.4 8.4 42 212-253 4-45 (63)
44 3n27_A Fusion glycoprotein F0, 60.0 42 0.0014 24.2 7.1 63 206-270 14-76 (80)
45 1twf_A B220, DNA-directed RNA 56.3 2.3 8E-05 48.1 0.0 6 50-55 647-652 (1733)
46 3ghg_A Fibrinogen alpha chain; 55.3 1.4E+02 0.005 29.2 12.2 22 36-57 60-81 (562)
47 1deq_A Fibrinogen (alpha chain 54.9 1.4E+02 0.0048 28.0 14.5 28 72-99 55-82 (390)
48 3b5n_A Synaptobrevin homolog 1 52.7 51 0.0017 22.3 8.2 39 213-251 3-41 (61)
49 1gl2_A Endobrevin; membrane pr 51.5 55 0.0019 22.4 7.0 40 212-251 9-48 (65)
50 1deq_A Fibrinogen (alpha chain 49.8 1.2E+02 0.0043 28.4 10.5 23 36-58 63-85 (390)
51 1dn1_B Syntaxin 1A, syntaxin b 44.3 78 0.0027 28.1 8.2 212 31-268 40-263 (267)
52 2kog_A Vesicle-associated memb 40.9 40 0.0014 26.3 5.0 17 202-218 51-67 (119)
53 2ww9_B Protein transport prote 40.1 12 0.00042 27.2 1.6 56 240-295 13-68 (80)
54 1qu7_A Methyl-accepting chemot 39.9 1.2E+02 0.0042 26.0 8.6 56 206-261 141-196 (227)
55 3efg_A Protein SLYX homolog; x 38.7 78 0.0027 22.7 5.8 48 213-260 15-62 (78)
56 2nps_A VAMP-4, vesicle-associa 35.6 1.1E+02 0.0038 21.4 6.9 38 214-251 10-47 (74)
57 2l5g_B Putative uncharacterize 35.0 84 0.0029 19.7 4.7 28 30-57 6-33 (42)
58 3swy_A Cyclic nucleotide-gated 33.0 98 0.0033 19.9 5.9 29 113-141 11-39 (46)
59 3swf_A CGMP-gated cation chann 32.9 1.2E+02 0.0042 21.5 5.9 31 113-143 13-43 (74)
60 1m1j_B Fibrinogen beta chain; 32.4 3.5E+02 0.012 26.1 13.0 50 6-56 67-116 (464)
61 1t3j_A Mitofusin 1; coiled coi 31.8 1.6E+02 0.0055 22.0 9.2 30 70-99 40-69 (96)
62 1x4t_A Hypothetical protein LO 31.7 1.6E+02 0.0054 21.8 7.1 24 73-96 52-78 (92)
63 2beq_A E2 glycoprotein; viral 31.6 72 0.0025 19.6 3.9 31 215-245 2-32 (38)
64 3lay_A Zinc resistance-associa 31.3 2.1E+02 0.0073 23.7 8.3 52 36-92 81-132 (175)
65 2lf0_A Uncharacterized protein 30.9 1.4E+02 0.0048 23.2 6.3 22 38-59 8-29 (123)
66 2dnx_A Syntaxin-12; snare, HAB 29.7 2E+02 0.0068 22.4 8.5 28 123-150 93-120 (130)
67 1i6z_A BAG-family molecular ch 28.3 2.2E+02 0.0077 22.6 14.9 85 33-119 21-105 (135)
68 3fym_A Putative uncharacterize 27.7 13 0.00043 29.3 0.0 12 273-284 102-113 (130)
69 1m1j_A Fibrinogen alpha subuni 25.9 4.5E+02 0.015 25.3 16.6 51 70-125 51-101 (491)
70 1l4a_A Synaptobrevin; snare, s 25.6 1.3E+02 0.0045 21.4 5.2 38 214-251 17-54 (80)
71 1m1j_A Fibrinogen alpha subuni 25.2 4.6E+02 0.016 25.2 10.4 25 33-57 58-82 (491)
72 3caz_A BAR protein; thermo-aci 24.7 3.2E+02 0.011 23.1 12.9 56 86-151 131-186 (294)
73 3r84_A Mediator of RNA polymer 24.4 2.1E+02 0.0071 20.9 9.3 63 206-268 2-68 (86)
74 2bez_C E2 glycoprotein; coiled 23.0 2.1E+02 0.0071 20.4 8.3 58 28-97 11-68 (77)
75 2fyz_B Fusion protein, fusion 22.4 1.5E+02 0.0052 19.1 4.4 31 245-275 12-42 (48)
76 3vlc_E Golgi to ER traffic pro 22.1 59 0.002 24.3 2.7 60 27-86 14-76 (94)
77 3oja_B Anopheles plasmodium-re 21.7 5.5E+02 0.019 24.8 18.1 64 206-269 517-580 (597)
78 3htk_A Structural maintenance 21.0 1.8E+02 0.0063 19.0 8.5 47 213-259 6-52 (60)
79 1rh5_B Preprotein translocase 21.0 23 0.00079 25.3 0.3 52 244-295 4-55 (74)
80 3twe_A Alpha4H; unknown functi 20.5 1.2E+02 0.004 16.5 3.4 15 37-51 5-19 (27)
81 2pnv_A Small conductance calci 20.5 78 0.0027 20.0 2.7 30 26-55 9-38 (43)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=8.5e-41 Score=310.03 Aligned_cols=240 Identities=21% Similarity=0.332 Sum_probs=182.2
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 20 VSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQ 99 (350)
Q Consensus 20 ~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~ 99 (350)
|.+.+...||.|++.|++|+..|..|+.++++|+++|+++++.+..+ ...+.+++.++.+|+++++.|+.+|+.|+..
T Consensus 22 ~~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~--~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~ 99 (267)
T 1dn1_B 22 VTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD--EKTKEELEELMSDIKKTANKVRSKLKSIEQS 99 (267)
T ss_dssp -----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999998755443 3567899999999999999999999999765
Q ss_pred cC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccH
Q psy2301 100 SS----DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDN 175 (350)
Q Consensus 100 ~~----~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (350)
.. ...++++.|+|++++..|..+|++++.+|+..|..|++++|.++.|+.++++++ .++
T Consensus 100 ~~~~~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~-----------------~td 162 (267)
T 1dn1_B 100 IEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRT-----------------TTS 162 (267)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------CCH
T ss_pred HhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCC-----------------CCH
Confidence 21 123356789999999999999999999999999999999999999999987753 133
Q ss_pred HHHHhhhhcCCCCccccHHHHHH--hhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHH
Q psy2301 176 EMIDRQFESSRPGVSKTQQQLLL--MEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTE 253 (350)
Q Consensus 176 ~~ie~~~~~~~~~~~~~qqql~~--~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~ 253 (350)
+.++.++++|++.+ |++..++. .....+.++++||++|.+||++|.|||+||+|||.||++||++||+||+||++|.
T Consensus 163 eeie~~ie~g~~~~-f~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 163 EELEDMLESGNPAI-FASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHTCSSCT-TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHhCCcHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555555554432 22210100 0045789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHH
Q psy2301 254 IEVKQGYQQLAKAERYHRKNRKMACI 279 (350)
Q Consensus 254 ~~v~~g~~eL~kA~~~qk~~rk~~~i 279 (350)
.||++|+.+|.+|.+|||++|||+||
T Consensus 242 ~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 242 DYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp CCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 99999999999999999999999986
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=2.5e-37 Score=288.93 Aligned_cols=238 Identities=18% Similarity=0.308 Sum_probs=168.4
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 18 NTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIK 97 (350)
Q Consensus 18 ~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~ 97 (350)
..+.|.....+++|++.+++|+..|..|+.++.+|.++|++.+..+.++|....+.+|+.++.+|+++++.|+..|+.|+
T Consensus 33 ~~~~~~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~ 112 (279)
T 2xhe_B 33 TSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIE 112 (279)
T ss_dssp -------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888999999999999999999999999999999999887666666556788999999999999999999999998
Q ss_pred hhcCC---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhcccc
Q psy2301 98 HQSSD---------AYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMD 168 (350)
Q Consensus 98 ~~~~~---------~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~ 168 (350)
..... +.+..+.+++++++..|+.+|++++..|+++|..|.+++|.+..|+..+.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~------------ 180 (279)
T 2xhe_B 113 KENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSL------------ 180 (279)
T ss_dssp HHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCC------------
T ss_pred HHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------
Confidence 75321 111226799999999999999999999999999999999998888766654321
Q ss_pred ccccccHHHHHhhhhcCCCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q psy2301 169 LWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYN 248 (350)
Q Consensus 169 ~~~~~~~~~ie~~~~~~~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~N 248 (350)
+++.++..+++|++.. |++.+.... ...+.++++|+++|.+||++|.||++||+|||.||++||++||+||+|
T Consensus 181 -----~~ee~~~~~e~g~~~~-f~q~~~~~~-~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~n 253 (279)
T 2xhe_B 181 -----SDDAIQKVIEHGTEGI-FSGMRLEGA-EAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFS 253 (279)
T ss_dssp -----SSTTHHHHHHHC-------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHH
T ss_pred -----CHHHHHHHHhCCchHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1112223333333221 232111111 345678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q psy2301 249 VERTEIEVKQGYQQLAKAERYHRKNR 274 (350)
Q Consensus 249 ve~a~~~v~~g~~eL~kA~~~qk~~r 274 (350)
|++|..||++|+.+|.+|.+|||++|
T Consensus 254 v~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 254 VEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp HHTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 99999999999999999999999987
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.96 E-value=1.3e-28 Score=197.40 Aligned_cols=95 Identities=26% Similarity=0.454 Sum_probs=88.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q psy2301 201 EDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACIL 280 (350)
Q Consensus 201 ~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~ 280 (350)
+..++++++|+++|++||++|.|||+||+|||+||++||++||+||+|+++|..||++|+++|.+|.+|||++|||+|||
T Consensus 10 ~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~ 89 (109)
T 3hd7_B 10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMI 89 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy2301 281 CLASTTLILLILLIL 295 (350)
Q Consensus 281 ~li~iIiiiii~liv 295 (350)
+++++|+++++++++
T Consensus 90 l~~~~i~~~i~~~~~ 104 (109)
T 3hd7_B 90 IICCVILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 988877766666554
No 4
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.95 E-value=1.3e-27 Score=211.92 Aligned_cols=192 Identities=11% Similarity=0.199 Sum_probs=150.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSR 107 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~ 107 (350)
||.|++.+++|+..|..|+.++.+|.++|+++++.+..++....+.+|+.++.+|+++++.|+..|+.|+....
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~------ 77 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI------ 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 78999999999999999999999999999998865554444467899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccc-cccHHHHHhhhhcCC
Q psy2301 108 EKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQ-ENDNEMIDRQFESSR 186 (350)
Q Consensus 108 e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ie~~~~~~~ 186 (350)
+.+++++++.+|+++|++++.+|++.|..|.+++|.+.+|++.+++++.+. +.+. ..++ +..+..+.+.+.
T Consensus 78 ~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~-~e~~----~~~~~~~~~~~f~~~~~--- 149 (196)
T 1fio_A 78 HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATE-DEVE----AAISDVGGQQIFSQALL--- 149 (196)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCH-HHHH----HHTSHHHHHHHHHHHTC---
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHH----HHHHcCCchhHHHHHHH---
Confidence 348999999999999999999999999999999999999999987764211 0010 0000 011112222210
Q ss_pred CCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q psy2301 187 PGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQG 239 (350)
Q Consensus 187 ~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQg 239 (350)
.++..... ...++++++||++|++||++|.|||+||+|||.||++||
T Consensus 150 -----~~~~~~~~-~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 150 -----NANRRGEA-KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp -----------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred -----hccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00000011 456789999999999999999999999999999999998
No 5
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.92 E-value=2e-25 Score=167.88 Aligned_cols=76 Identities=30% Similarity=0.504 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q psy2301 204 AAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACI 279 (350)
Q Consensus 204 ~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i 279 (350)
++++++|+++|++||++|.||++||+|||.||++||++||+||+||++|..||++|+.+|.+|.+||+++||++||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999886
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.90 E-value=1.1e-23 Score=155.76 Aligned_cols=70 Identities=36% Similarity=0.658 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q psy2301 208 RIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMA 277 (350)
Q Consensus 208 ~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~ 277 (350)
++|+++|++||++|.||++||+|||.||++||++||+||+||++|..||++|..+|.+|.+||+++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999875
No 7
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.89 E-value=5.4e-23 Score=190.33 Aligned_cols=238 Identities=21% Similarity=0.306 Sum_probs=167.3
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 19 TVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKH 98 (350)
Q Consensus 19 ~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~ 98 (350)
.+.......+++|++.+++|...|..+...+++|.+++.+.+.. .++......+++.++.+|+..+..++..++.+..
T Consensus 33 ~~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~ 110 (279)
T 3c98_B 33 TVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILAS--PNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 110 (279)
T ss_dssp ------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999999999999999999988753 3444445678999999999999999988888765
Q ss_pred hcC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhcccccccccc
Q psy2301 99 QSS----DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQEND 174 (350)
Q Consensus 99 ~~~----~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (350)
... .+....+.+.+.++...|...+..+...|...+..|...++....|.....+....-
T Consensus 111 ~~~~~~~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~---------------- 174 (279)
T 3c98_B 111 SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTS---------------- 174 (279)
T ss_dssp HHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH----------------
T ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc----------------
Confidence 422 233356788999999999999999999999999999999999888877765542100
Q ss_pred HHHHHhhhhcCCCCc-----cccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhH
Q psy2301 175 NEMIDRQFESSRPGV-----SKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNV 249 (350)
Q Consensus 175 ~~~ie~~~~~~~~~~-----~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nv 249 (350)
.+...... .+.... ....++. ......+++|++++.+|+.+|.+|+++|.+|+.+|++||+++|+|++||
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv 249 (279)
T 3c98_B 175 EELEDMLE-SGNPAIFASGIIMDSSIS----KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 249 (279)
T ss_dssp HHHHHHHH-SCCTTSSTTTSCSCSSST----THHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHH
T ss_pred hHHHHHHH-hhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000000 0000010 3456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q psy2301 250 ERTEIEVKQGYQQLAKAERYHRKNRKMACI 279 (350)
Q Consensus 250 e~a~~~v~~g~~eL~kA~~~qk~~rk~~~i 279 (350)
+++..+|++|..+|.+|.+||+++||||||
T Consensus 250 ~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 250 EHAVDYVERAVSDTKKAVKYQSKARRKKIM 279 (279)
T ss_dssp HTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 999999999999999999999999999986
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.88 E-value=1.5e-22 Score=154.29 Aligned_cols=74 Identities=31% Similarity=0.516 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy2301 201 EDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNR 274 (350)
Q Consensus 201 ~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~r 274 (350)
+..+.++++|+++|++||++|.||++||+|||.||++||++||+||+||++|..||++|..+|.+|.+|||++|
T Consensus 10 ~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999986
No 9
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.87 E-value=4.9e-22 Score=146.07 Aligned_cols=68 Identities=35% Similarity=0.529 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 204 AAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHR 271 (350)
Q Consensus 204 ~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk 271 (350)
++++++|+++|++||++|.||++||+||+.||++||++||+||+||++|..||++|+.+|.||.+|||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999986
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.83 E-value=8.3e-21 Score=139.12 Aligned_cols=66 Identities=30% Similarity=0.485 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy2301 203 NAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAER 268 (350)
Q Consensus 203 ~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~ 268 (350)
.++++++|+++|++||++|.||++||+|||.||++||++||+||+||++|..||++|+.+|.||.+
T Consensus 3 ~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~k 68 (68)
T 1n7s_B 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 68 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999999999999999999999999999999999953
No 11
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.83 E-value=1.2e-20 Score=136.93 Aligned_cols=64 Identities=36% Similarity=0.619 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy2301 205 AQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAER 268 (350)
Q Consensus 205 ~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~ 268 (350)
+++++|+++|++||++|.||++||+|||.||++||++||+||+||++|..||++|..+|.||.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999999999999999999999999999999864
No 12
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.68 E-value=6.8e-17 Score=140.98 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=100.0
Q ss_pred cccccc-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 18 NTVSYF-DSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKI 96 (350)
Q Consensus 18 ~~~~~~-~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l 96 (350)
..|++. ....++.|++.|++|+..|..|..++.+|.++|.+++.. +++....+.+++.++.+|+++++.|+.+|+.|
T Consensus 27 ~~~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~--~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l 104 (180)
T 1s94_A 27 VAVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA--PQTDDQMKEELEELMTDIKRTANKVRGKLKTI 104 (180)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566 678899999999999999999999999999999998863 44445667899999999999999999999999
Q ss_pred HhhcC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q psy2301 97 KHQSS----DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDED 155 (350)
Q Consensus 97 ~~~~~----~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~ 155 (350)
+.... .+.++++.|+|++++.+|.++|+++|.+|+.+|..|++++|.+++|+.++++++
T Consensus 105 ~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~~I~~~~ 167 (180)
T 1s94_A 105 ELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQMEITGRT 167 (180)
T ss_dssp HHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-----------
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 86532 123356779999999999999999999999999999999999999999998753
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.64 E-value=3.5e-15 Score=122.66 Aligned_cols=120 Identities=17% Similarity=0.256 Sum_probs=105.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Q psy2301 24 DSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSS-- 101 (350)
Q Consensus 24 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~-- 101 (350)
+...|+.|++.|++|+..|..|+..+++|..+|.++|..+.. ....+.+++.++.+|++++..|+.+|+.|+....
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 80 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 80 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999876554 3456789999999999999999999999986532
Q ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 102 --DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTRE 145 (350)
Q Consensus 102 --~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~ 145 (350)
.+.++++.|+|++++.+|..+|+++|.+|+.+|..|+++++.++
T Consensus 81 ~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ri 126 (127)
T 1ez3_A 81 EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 126 (127)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23446788999999999999999999999999999999998753
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.5e-07 Score=75.83 Aligned_cols=116 Identities=11% Similarity=0.178 Sum_probs=101.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q psy2301 26 RAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYT 105 (350)
Q Consensus 26 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~ 105 (350)
.-+|+|...++.|...|..|+..+..|+++.+.. ++..|...++++|..+...++.+++.+...|++|....... .
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~L---GT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~-~ 82 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQL---GTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPL-S 82 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS-S
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c
Confidence 3468899999999999999999999999998875 35678999999999999999999999999999999875322 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 106 SREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTRE 145 (350)
Q Consensus 106 ~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~ 145 (350)
..+.+.++-+...|.+.|+.++++|+.+|+.+.++.|.-.
T Consensus 83 ~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 83 TSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3566888899999999999999999999999998876543
No 15
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.80 E-value=6.4e-05 Score=56.32 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKN 273 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~ 273 (350)
.+++.++.+..|..+|..|++|-.+|+..|.+|..+||+++..++.+...+..+.+.+.+..+..+.+
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 45667788999999999999999999999999999999999999999999999999999888765544
No 16
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.62 E-value=0.00016 Score=51.58 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
.+++.++.+..|..+|..|++|-.+|+..|.+|..+||+++..++.+...+..+.+.+.+
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667889999999999999999999999999999999999999999999999888754
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.58 E-value=0.00053 Score=49.01 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 209 IRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 209 eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
+-++.+..|..+|..|++|-.+|+..|..|..+||+|+..++.+...+..+++.+.+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999999999999999999999999988765
No 18
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.45 E-value=0.00098 Score=50.36 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 208 RIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 208 ~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
++-++.+..|...|..|++|-.+|+..|..|..+||+|+..++.+...+..+++.+.+
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999999988865
No 19
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=97.41 E-value=0.0033 Score=48.27 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy2301 36 EETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIE-LLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYN 114 (350)
Q Consensus 36 ~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~-~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir~n 114 (350)
.+....+..+...|..|+++..++ ++-.|...++.+|+ .+...++.+.+.++ .+..+.
T Consensus 6 ~d~~~li~t~s~niq~l~k~~~ql---GTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l~----------------- 64 (97)
T 1hs7_A 6 KELSNLIETFAEQSRVLEKECTKI---GSKRDSKELRYKIETELIPNCTSVRDKIE-SNILIH----------------- 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---TSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHHH-----------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-----------------
Confidence 456667777778888888888885 46688999999999 89998888888877 222220
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 115 VISSLVTNLQQKSIQFRSMQSSYLNKIKT 143 (350)
Q Consensus 115 ~~~~L~~kl~~i~~~fq~~q~~~~~~~k~ 143 (350)
+...|...|..+.+.|+.+|+.|.++.++
T Consensus 65 qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 65 QNGKLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678889999999999999999987654
No 20
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.38 E-value=0.0072 Score=47.55 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q psy2301 202 DNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILC 281 (350)
Q Consensus 202 ~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~ 281 (350)
...+++++=++.|.+|..-..+++.|..+=+.+|..=+.-+++...|++.+...+.+|.+.=+ ..++..+++++|+
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk----~~rkk~~i~l~~~ 93 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS----KARRKKIMIIICC 93 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcceehHHHH
Confidence 445677777888899999999999999999999999999999999999999999999986533 3344457766665
Q ss_pred HHHHHHHHHHH
Q psy2301 282 LASTTLILLIL 292 (350)
Q Consensus 282 li~iIiiiii~ 292 (350)
+++++++.+++
T Consensus 94 ~i~~~i~~~~~ 104 (109)
T 3hd7_B 94 VILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555554444
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.25 E-value=0.0011 Score=50.02 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 209 IRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 209 eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
+-++.+..|...+..|++|-.+|+..|..|.++||+|+..++.+...+..+++.+.+
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999988765
No 22
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0027 Score=45.00 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 210 RSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 210 R~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
-++.+.+|...+..|+.|-.+|+..|..|.++||+|+..++.+...+..+++.|.+
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34677889999999999999999999999999999999999999999999888753
No 23
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.89 E-value=0.02 Score=43.40 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=45.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchh--HHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKM--ACILCLASTT 286 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~--~~i~~li~iI 286 (350)
+.+.++...+.|+..+..+=-.-|-+.||-||.+++-.++-.. .|..--..|++-.++..|. ++++++++++
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~---~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv 78 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA---GASQFETSAAKLKRKYWWKNLKMMIILGVIC 78 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888889999999988776654333 2223333444444443332 4444444433
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.69 E-value=0.0092 Score=40.72 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=39.3
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q psy2301 218 VKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLA 264 (350)
Q Consensus 218 E~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~ 264 (350)
.+-+.|-.++-.....++++|||.|+||+.+++++..++..|.+.|.
T Consensus 6 ~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 6 LGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 34455556666677778999999999999999999999999998884
No 25
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=96.56 E-value=0.039 Score=40.64 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=47.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301 211 SQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK 265 (350)
Q Consensus 211 ~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k 265 (350)
-+.+++..+-+.|-.++-.....+++.||+.|+|++.+++.+..++..|.+.|..
T Consensus 22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 3556666777778888888899999999999999999999999999999998853
No 26
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=96.07 E-value=0.063 Score=38.56 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2301 225 NHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERY 269 (350)
Q Consensus 225 ~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~ 269 (350)
.+.-..=..++.+|||.|+|||.|++.+..+...|.++|..-..+
T Consensus 25 e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 25 ERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333334445788999999999999999999999999999765544
No 27
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=95.52 E-value=0.14 Score=41.32 Aligned_cols=108 Identities=8% Similarity=0.049 Sum_probs=60.2
Q ss_pred CCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 13 RGGIGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQL 92 (350)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~ 92 (350)
|++-.++ -+++++..+.|+...++|...|+.++........+.... ++. . ..++..++.++...+..++..
T Consensus 12 ~~~~~~~-~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~---~~~--s---~~E~~~~~~EL~~~l~sie~d 82 (130)
T 4dnd_A 12 DLGTENL-YFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQES---AAV--G---REELDWTTNELRNGLRSIEWD 82 (130)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccce-eeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCc--c---hHHHHHHHHHHHHHHHHHHHH
Confidence 3444442 344556678899999999999999999998877665432 111 1 125556666666777777777
Q ss_pred HHHHHhhcC--------CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 93 IQKIKHQSS--------DAYTSREKRLAYNVISSLVTNLQQKSIQ 129 (350)
Q Consensus 93 I~~l~~~~~--------~~~~~~e~rir~n~~~~L~~kl~~i~~~ 129 (350)
|+.|+.... -+-...+..-|+..+..+..++.++-..
T Consensus 83 LeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 83 LEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665421 1223456677788888888777765543
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.43 E-value=0.057 Score=40.13 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=41.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLA 264 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~ 264 (350)
+..++.-+-+.+-.+.-..=..++..|||.|+||+.|++....++..|.+.|.
T Consensus 27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~ 79 (83)
T 1l4a_C 27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666677778999999999999999999999998877663
No 29
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=93.45 E-value=0.009 Score=47.70 Aligned_cols=39 Identities=8% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVER 251 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~ 251 (350)
.+.++...+.|+..+..+=-.-|-+-||-||.+++..++
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 445666677777777777777788899999888876654
No 30
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=90.86 E-value=1.7 Score=30.44 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=43.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLA 264 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~ 264 (350)
-+.+-.+.+.|--++-.+...-++.|+|.|.+...++.++..++.+|.+-|.
T Consensus 10 ~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 10 SIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 3444555666777777888889999999999999999999999999998875
No 31
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=90.80 E-value=3.5 Score=31.16 Aligned_cols=87 Identities=13% Similarity=0.230 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q psy2301 29 PIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSRE 108 (350)
Q Consensus 29 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e 108 (350)
+.|+...+++...|..+...+.+ .. ..++ ...+.+++....++...+..+.+.|.-++.. ...+
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~------~~-~~~~----~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-----~~~E 69 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR------HN-TAGD----DDQEEEIQDILKDVEETIVDLDRSIIVMKRD-----ENED 69 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH------TC-CC------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----TTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH------cc-CCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHH
Confidence 67999999999999999888554 21 1121 2345688888888888888888888887765 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 109 KRLAYNVISSLVTNLQQKSIQFR 131 (350)
Q Consensus 109 ~rir~n~~~~L~~kl~~i~~~fq 131 (350)
..-|+..+..+..++.++-..++
T Consensus 70 I~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 70 VSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888887776664
No 32
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=81.97 E-value=11 Score=26.33 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQG 259 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g 259 (350)
++++=.+.|.+|..-..+|+.|..+=+.+|..=..-++.-..||+.+...+.+|
T Consensus 13 ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 13 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555555555554
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.81 E-value=17 Score=35.57 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 72 ETKIELLTQEISRMFNGCHQLIQKIK 97 (350)
Q Consensus 72 ~~~I~~l~~~I~~~~~~i~~~I~~l~ 97 (350)
+.-|.+.-.++++.|.++++.+++++
T Consensus 52 QglLdkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555553
No 34
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=80.65 E-value=12 Score=26.13 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
.+++=.+.|.+|..-..+|+.|..+=+.+|..=..-++.-..||+.+...+.+|.
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 11 ELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555555555555555554
No 35
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=79.49 E-value=13 Score=28.21 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=43.1
Q ss_pred cCCCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHH
Q psy2301 23 FDSRAAPI-----WTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRM 85 (350)
Q Consensus 23 ~~~~~~~~-----f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~ 85 (350)
--+++||+ ...++++++..|.+-...-+-|.++++-....|.++|..+.+.+|.+....|..+
T Consensus 7 d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L 74 (98)
T 2ke4_A 7 DFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERL 74 (98)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 35667774 5667888888888777776777777766555688888776666666665555443
No 36
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=78.41 E-value=15 Score=25.81 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy2301 205 AQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAE 267 (350)
Q Consensus 205 ~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~ 267 (350)
+++++=.+.|.+|..-..+|+.|..+=+.+|..=+.-++....||+.+...+.+|.+.-.+++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 68 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSR 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555677888888889999999999999999899999999999999999999987655543
No 37
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=77.04 E-value=15 Score=25.28 Aligned_cols=55 Identities=9% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
.+++=.+.|..|..-..+|+.|..+=+.+|..=..-+++-..||+.+...+.+|.
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445556666666666666666666666666666666666666666666554
No 38
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=74.43 E-value=22 Score=25.76 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2301 208 RIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERY 269 (350)
Q Consensus 208 ~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~ 269 (350)
..-.+-+.+-...+.|--++-.++..-+..|.|.|.+....+..+..++.++.+.|..-.+.
T Consensus 15 ~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 15 ERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 33345566677777888888888889999999999999999999999999999988655443
No 39
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=73.02 E-value=23 Score=25.26 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy2301 204 AAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAER 268 (350)
Q Consensus 204 ~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~ 268 (350)
.+++++=.+.|.+|..-..+++.|..+=+.+|..=+.-++.-..||+.+...+.+|.+.-.++++
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34556666777778888888888888888888888888888888888888888888775554443
No 40
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=72.09 E-value=25 Score=26.35 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=32.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERT 252 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a 252 (350)
+.|.++...+.|+..+..+=-.-|-+-|+-||.+++-.++-
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L 70 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677778888888888888888889999999887766553
No 41
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=67.22 E-value=33 Score=24.81 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q psy2301 203 NAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQ 262 (350)
Q Consensus 203 ~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~e 262 (350)
...++++=.+.|.+|..-..+|+.|..+=+.+|..=+.-++....||+.+...+.+|.+.
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667788888888888888888888888888888888888888888888888764
No 42
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=63.51 E-value=13 Score=32.52 Aligned_cols=223 Identities=10% Similarity=0.092 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc---
Q psy2301 29 PIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYT--- 105 (350)
Q Consensus 29 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~--- 105 (350)
......++.+...+..+.............. .....+-...-.+|..+...+...+..++...+...........
T Consensus 50 e~i~~~i~~i~~~v~el~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~i~~ 127 (279)
T 3c98_B 50 EEIRGFIDKIAENVEEVKRKHSAILASPNPD--EKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRI 127 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHH
Confidence 3455566667777776666555432211110 00011112334567777777777777777666665544331110
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHHHhhhhc
Q psy2301 106 -SREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFES 184 (350)
Q Consensus 106 -~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~ 184 (350)
......-..-......++......|.........+...+.. .-.............. ...... ....
T Consensus 128 ~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~---~~~~~~~~~~~~~~~~--------~~~~~~-~~~~ 195 (279)
T 3c98_B 128 RKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG---RTTTSEELEDMLESGN--------PAIFAS-GIIM 195 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CCCCHHHHHHHHHSCC--------TTSSTT-TSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCccchHHHHHHHhhh--------hHHHHH-HHHH
Confidence 01111112223456667788888887655544444333221 1111000000000000 000000 0000
Q ss_pred CCCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q psy2301 185 SRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLA 264 (350)
Q Consensus 185 ~~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~ 264 (350)
+.. ...+.+..+ ......+.+=...|.+|...+.+|+.+-.+-+..+.+=..-|+.+-.+++.+...+.+|.+.-.
T Consensus 196 ~~~---~~~~~~~~i-~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~ 271 (279)
T 3c98_B 196 DSS---ISKQALSEI-ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 271 (279)
T ss_dssp CSS---STTHHHHHH-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------
T ss_pred HHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 011121111 2334556666678888899999999999999999998888899999999999999999988777
Q ss_pred HHHHH
Q psy2301 265 KAERY 269 (350)
Q Consensus 265 kA~~~ 269 (350)
++++.
T Consensus 272 ~~Rkk 276 (279)
T 3c98_B 272 KARRK 276 (279)
T ss_dssp -----
T ss_pred HHhCc
Confidence 66654
No 43
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=63.29 E-value=33 Score=23.38 Aligned_cols=42 Identities=7% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTE 253 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~ 253 (350)
+.|.++...+.|+..+..+=-.-|-+-|+-||.+++-.++-.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~ 45 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 457788888999999998888889999999988877655433
No 44
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=59.97 E-value=42 Score=24.19 Aligned_cols=63 Identities=8% Similarity=0.153 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYH 270 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~q 270 (350)
-+++-++.|.+|-.+...+.-.-+.+..-|..+|-+ .|--|...|...++....+|.|+++.-
T Consensus 14 SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~~ 76 (80)
T 3n27_A 14 SIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQKL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHHh
Confidence 456666777777777777777777777777777764 467778888888888888888887643
No 45
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=56.26 E-value=2.3 Score=48.06 Aligned_cols=6 Identities=17% Similarity=0.518 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy2301 50 KELEKL 55 (350)
Q Consensus 50 ~~L~~l 55 (350)
+.++++
T Consensus 647 d~l~~l 652 (1733)
T 1twf_A 647 GNIQKV 652 (1733)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.25 E-value=1.4e+02 Score=29.20 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2301 36 EETQYALPRLENKLKELEKLQE 57 (350)
Q Consensus 36 ~~i~~~i~~i~~~i~~L~~l~~ 57 (350)
.++...|++|+..++++++.++
T Consensus 60 rDltkrINELKnqLEdlsKnsK 81 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNK 81 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhch
Confidence 3566666666666666655544
No 47
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.94 E-value=1.4e+02 Score=28.03 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 72 ETKIELLTQEISRMFNGCHQLIQKIKHQ 99 (350)
Q Consensus 72 ~~~I~~l~~~I~~~~~~i~~~I~~l~~~ 99 (350)
+.-|.+....++..|..+++.|..+.+.
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555666665555543
No 48
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=52.66 E-value=51 Score=22.27 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=31.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVER 251 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~ 251 (350)
.+.++...+.|+..+..+=-.-|-+.|+-||.+++-.++
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467788888888888888778888899988888766553
No 49
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=51.55 E-value=55 Score=22.40 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHH
Q psy2301 212 QEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVER 251 (350)
Q Consensus 212 ~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~ 251 (350)
+.|.++...+.|+..+..+=-.-|-+-|+-||.++.-.++
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~ 48 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED 48 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456677777777777777767777788887777655444
No 50
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.77 E-value=1.2e+02 Score=28.36 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy2301 36 EETQYALPRLENKLKELEKLQES 58 (350)
Q Consensus 36 ~~i~~~i~~i~~~i~~L~~l~~~ 58 (350)
.+++..|.+|+..|..+.+.++.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~ 85 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKD 85 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhH
Confidence 46777777777777777666654
No 51
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=44.33 E-value=78 Score=28.08 Aligned_cols=212 Identities=12% Similarity=0.147 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C
Q psy2301 31 WTDALEETQYALPRLENKLKEL-------EKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSS-D 102 (350)
Q Consensus 31 f~~~~~~i~~~i~~i~~~i~~L-------~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~-~ 102 (350)
--.....|+..+..+......+ ..+..+ -.....+|..+...|+..++.++..+..-..... .
T Consensus 40 I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~---------l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~ 110 (267)
T 1dn1_B 40 IRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEE---------LEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 110 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence 3444556666666666555443 111111 1123457888888888889988887654332211 1
Q ss_pred C----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHH
Q psy2301 103 A----YTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMI 178 (350)
Q Consensus 103 ~----~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (350)
. .......+ .+-+..+..+|+.+-..|+...+....+--.-. ..-...+ .+.+.+.+ +..+.+
T Consensus 111 ~e~Rirk~q~~~L-~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~---~~~~tde-eie~~ie~--------g~~~~f 177 (267)
T 1dn1_B 111 ADLRIRKTQHSTL-SRKFVEVMSEYNATQSDYRERCKGRIQRQLEIT---GRTTTSE-ELEDMLES--------GNPAIF 177 (267)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCCCCHH-HHHHHHHT--------CSSCTT
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc---CCCCCHH-HHHHHHhC--------CcHHHH
Confidence 1 11122333 455677788999999999887655443311111 1111110 01000100 001111
Q ss_pred HhhhhcCCCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q psy2301 179 DRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQ 258 (350)
Q Consensus 179 e~~~~~~~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~ 258 (350)
.+++..+ ...+++.+..+ .....++.+=+..|..|..-..+|+.|..+=+.+|..=..-|+....||+.+...+.+
T Consensus 178 ~q~~l~~---~~~~~~~l~~i-~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~k 253 (267)
T 1dn1_B 178 ASGIIMD---SSISKQALSEI-ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 253 (267)
T ss_dssp TTTCCCC---SHHHHHHHHHH-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred HHHHHHh---hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111000 00133344444 3455678888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2301 259 GYQQLAKAER 268 (350)
Q Consensus 259 g~~eL~kA~~ 268 (350)
|.+.=.++++
T Consensus 254 A~~~q~~~rk 263 (267)
T 1dn1_B 254 AVKYQSKARR 263 (267)
T ss_dssp ----------
T ss_pred HHHHHHHhcC
Confidence 9887655554
No 52
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=40.87 E-value=40 Score=26.28 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy2301 202 DNAAQARIRSQEVDHIV 218 (350)
Q Consensus 202 ~~~~~i~eR~~eI~~IE 218 (350)
.+.+.+-+|.+.+..|+
T Consensus 51 ~NIdkvLeRGEkLd~L~ 67 (119)
T 2kog_A 51 VNVDKVLERDQKLSELD 67 (119)
T ss_dssp HHHHHHHCCCCSSCCCC
T ss_pred HHHHHHHHcccHHHHHH
Confidence 34445555554444443
No 53
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=40.06 E-value=12 Score=27.19 Aligned_cols=56 Identities=18% Similarity=0.065 Sum_probs=30.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 240 TILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 240 e~IDrId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv 295 (350)
.|-|.++.-++...+.++.+..=|++|++--++--...+...+++++++-++.++|
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777788888888888777776655444433455566666666655555554
No 54
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=39.89 E-value=1.2e+02 Score=26.03 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQ 261 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~ 261 (350)
.+.+=.+.+..|...+.++..++.+++..+.+|...++.|..+++....-++....
T Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~ 196 (227)
T 1qu7_A 141 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAA 196 (227)
T ss_dssp HHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566788888999999999999999999999999998888876655544433
No 55
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.72 E-value=78 Score=22.66 Aligned_cols=48 Identities=6% Similarity=-0.030 Sum_probs=33.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~ 260 (350)
.|.+||..+.-.-....+|+..|..|...||+...-+..-...+....
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666777777777777888888899999988888877776665433
No 56
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=35.59 E-value=1.1e+02 Score=21.35 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=26.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHH
Q psy2301 214 VDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVER 251 (350)
Q Consensus 214 I~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~ 251 (350)
|.++...+.|+..+..+=-.-|-+-|+-||.+++-.++
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45666677777777777667777888888877765554
No 57
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.01 E-value=84 Score=19.72 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 30 IWTDALEETQYALPRLENKLKELEKLQE 57 (350)
Q Consensus 30 ~f~~~~~~i~~~i~~i~~~i~~L~~l~~ 57 (350)
+.++..+-|...|.+...+|++|++..+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777766666665443
No 58
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.00 E-value=98 Score=19.87 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 113 YNVISSLVTNLQQKSIQFRSMQSSYLNKI 141 (350)
Q Consensus 113 ~n~~~~L~~kl~~i~~~fq~~q~~~~~~~ 141 (350)
.+....|.++|..++.+|.+.|..-+.++
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999987655443
No 59
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.87 E-value=1.2e+02 Score=21.47 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 113 YNVISSLVTNLQQKSIQFRSMQSSYLNKIKT 143 (350)
Q Consensus 113 ~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~ 143 (350)
.+.+..|.++|..++.+|.+.|..-+.++-.
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KLKqRit~ 43 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKLKQRLTK 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999866555543
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.45 E-value=3.5e+02 Score=26.10 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=31.1
Q ss_pred ccccccCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 6 AGVEMKHRGGIGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQ 56 (350)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~ 56 (350)
||--...|.+||..-- .+=++.+-+.+.-+.|+..|..++..+++|+...
T Consensus 67 a~~c~~~~~~~G~~CP-TtC~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 67 AGGCKHPLDELGVLCP-TGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp CSCEECSSTTTCEEEE-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCccCcCC-CccHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhh
Confidence 4555566677776321 1333444444444568999999999888886543
No 61
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=31.84 E-value=1.6e+02 Score=21.99 Aligned_cols=30 Identities=3% Similarity=0.164 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301 70 EQETKIELLTQEISRMFNGCHQLIQKIKHQ 99 (350)
Q Consensus 70 ~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~ 99 (350)
.+..+++...++.+..++++.++|..|+..
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777888777777764
No 62
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=31.70 E-value=1.6e+02 Score=21.84 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHH
Q psy2301 73 TKIELLTQEISRMFNGCH---QLIQKI 96 (350)
Q Consensus 73 ~~I~~l~~~I~~~~~~i~---~~I~~l 96 (350)
.+|.+|.++|+++++.-. ..|..|
T Consensus 52 ~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 52 FRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999998653 455555
No 63
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=31.61 E-value=72 Score=19.62 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy2301 215 DHIVKSIVDLNHLFKDLSHMVVHQGTILDRI 245 (350)
Q Consensus 215 ~~IE~sI~EL~~iF~dLa~LV~eQge~IDrI 245 (350)
..+.+++..++.-+..+...|.+||..+...
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~L 32 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTL 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567778888888888899999999887754
No 64
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.29 E-value=2.1e+02 Score=23.66 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 36 EETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQL 92 (350)
Q Consensus 36 ~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~ 92 (350)
++.+.....++..+.....--...+..++||. .+|+++..+|..+-.++...
T Consensus 81 ~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De-----akI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 81 DDYYTQTSALRQQLISKRYEYNALLTASSPDT-----AKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333332233333344542 46777777776665555443
No 65
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=30.85 E-value=1.4e+02 Score=23.17 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy2301 38 TQYALPRLENKLKELEKLQESH 59 (350)
Q Consensus 38 i~~~i~~i~~~i~~L~~l~~~~ 59 (350)
.+..|..++..++.++......
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa 29 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADL 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777776665554
No 66
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.74 E-value=2e+02 Score=22.41 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2301 123 LQQKSIQFRSMQSSYLNKIKTREERSKM 150 (350)
Q Consensus 123 l~~i~~~fq~~q~~~~~~~k~~~~R~~~ 150 (350)
...++.+|+.....|....+.-.++...
T Consensus 93 ~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 93 KERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666666666555554444433
No 67
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=28.28 E-value=2.2e+02 Score=22.56 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHH
Q psy2301 33 DALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLA 112 (350)
Q Consensus 33 ~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir 112 (350)
....++...+..+...++++..--..+. -+|-+.+-....+..+...|+....++-+.|..|+...-.........-|
T Consensus 21 KkL~dveksv~~~~k~l~~l~~el~~ie--kGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kR 98 (135)
T 1i6z_A 21 KKLKDLEVSAEKIANHLQELNKELSGIQ--QGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPEQFKDSRLKR 98 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCccHHHHHHHH
Confidence 3566666666666666655554444432 35655443223455566667777777777777777654322223333344
Q ss_pred HHHHHHH
Q psy2301 113 YNVISSL 119 (350)
Q Consensus 113 ~n~~~~L 119 (350)
+..+..+
T Consensus 99 K~lV~~i 105 (135)
T 1i6z_A 99 KNLVKKV 105 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 68
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=27.71 E-value=13 Score=29.32 Aligned_cols=12 Identities=8% Similarity=0.238 Sum_probs=0.0
Q ss_pred cchhHHHHHHHH
Q psy2301 273 NRKMACILCLAS 284 (350)
Q Consensus 273 ~rk~~~i~~li~ 284 (350)
.+.+.|.+++++
T Consensus 102 ~~~~~~~~i~~~ 113 (130)
T 3fym_A 102 SKEPIQLLVIMG 113 (130)
T ss_dssp ------------
T ss_pred hhhHHHHHHHHH
Confidence 333444443333
No 69
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.88 E-value=4.5e+02 Score=25.28 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHH
Q psy2301 70 EQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQ 125 (350)
Q Consensus 70 ~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~e~rir~n~~~~L~~kl~~ 125 (350)
.++.-|.+.-..++..+..+++.|..+.+..+ .....-+++...++.++++
T Consensus 51 rLqglL~kqerdv~~rI~kLkn~L~~~s~s~~-----~s~~y~~~~~~~lk~~~~q 101 (491)
T 1m1j_A 51 RMQGIIDDTDQNYSQRIDNIRQQLADSQNKYK-----TSNRVIVETINILKPGLEG 101 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhhhhHHHHHHHHHHHHHHHHhhcc-----hHHHHHHHHHHHHHHHHhh
Confidence 44566777778888888888888888877533 2223334455555555443
No 70
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=25.59 E-value=1.3e+02 Score=21.37 Aligned_cols=38 Identities=5% Similarity=0.197 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHH
Q psy2301 214 VDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVER 251 (350)
Q Consensus 214 I~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~ 251 (350)
|.++...+.|+..+..+=-.-|-+-|+-||.+++-.++
T Consensus 17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45556666667777776666777888888877766554
No 71
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.24 E-value=4.6e+02 Score=25.20 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 33 DALEETQYALPRLENKLKELEKLQE 57 (350)
Q Consensus 33 ~~~~~i~~~i~~i~~~i~~L~~l~~ 57 (350)
+.=.++...|.+|+..+.++.+.++
T Consensus 58 kqerdv~~rI~kLkn~L~~~s~s~~ 82 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLADSQNKYK 82 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhcc
Confidence 3444788888888888888776554
No 72
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=24.70 E-value=3.2e+02 Score=23.07 Aligned_cols=56 Identities=9% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2301 86 FNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMY 151 (350)
Q Consensus 86 ~~~i~~~I~~l~~~~~~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~ 151 (350)
-...+-+++.|+...+ ...+|++|+ ++|.+.-..|++...+...++..-.....++
T Consensus 131 YDHYKlKvdELEK~~K-----dSeKI~RNQ-----sKLssAEtaYkqvcsDiInkMnkll~n~~ri 186 (294)
T 3caz_A 131 YDHYKVKLDNLEKKNK-----DQERIERNQ-----QKFKDAEAAYSSVCADLIQKMETVWKKHVSI 186 (294)
T ss_dssp HHHHHHHHHHHHHHTC-----CHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhccc-----hHHHHHHhH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666665433 234666664 3444555555555555544444444333333
No 73
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=24.43 E-value=2.1e+02 Score=20.89 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDL----NHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAER 268 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL----~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~ 268 (350)
++++|-+.+.+|..+|..| ..+|..++..-..=...=...+.++..-...++.....|.+=.+
T Consensus 2 ~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk 68 (86)
T 3r84_A 2 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQ 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888887777776654 45555565554433356666777777777777777777765443
No 74
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=22.97 E-value=2.1e+02 Score=20.36 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 28 APIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIK 97 (350)
Q Consensus 28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~ 97 (350)
...|.+-...|...+.....-+.+++.-.++. ...+..++......|..+...|+++-
T Consensus 11 A~sFN~A~~~i~~g~~tts~AL~kiQdVVN~q------------~~aL~~L~~qL~~NFgAISssi~dIy 68 (77)
T 2bez_C 11 ANQFNKAISQIQESLTTTSTALGKLQDVVNQN------------AQALNTLVKQLSSNFGAISSVLNDIL 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45688888888888888887777777665542 13566677777777777776666553
No 75
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=22.39 E-value=1.5e+02 Score=19.13 Aligned_cols=31 Identities=3% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy2301 245 IDYNVERTEIEVKQGYQQLAKAERYHRKNRK 275 (350)
Q Consensus 245 Id~Nve~a~~~v~~g~~eL~kA~~~qk~~rk 275 (350)
|..++.++...++.|...|.++.++-.+-++
T Consensus 12 ISseL~~iNnsL~~A~~~I~eSn~~L~~V~~ 42 (48)
T 2fyz_B 12 ISTELSKVNASLQNTVKYIKESNHQLQSVIV 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677778888888888888888887766554
No 76
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=22.06 E-value=59 Score=24.25 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=26.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCh---HHHHHHHHHHHHHHHHH
Q psy2301 27 AAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDEST---EQETKIELLTQEISRMF 86 (350)
Q Consensus 27 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~---~~~~~I~~l~~~I~~~~ 86 (350)
.-+.|++++.--+......+....++..+.......+..|+-+ +++.+++.+..++..+-
T Consensus 14 ~~~~~~~~v~p~s~~~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~ 76 (94)
T 3vlc_E 14 YHEKWISKFAPGNELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 76 (94)
T ss_dssp ------------CCTTHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHhCcccHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777766545556666677777777776654333333332 55556665555554443
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.69 E-value=5.5e+02 Score=24.78 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2301 206 QARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERY 269 (350)
Q Consensus 206 ~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~kA~~~ 269 (350)
..+.+..+.++.++.+.+..+.+..+..-+.+-...++.+...+......+....+++++-.+.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777777777776666666666666666666666666666666666554443
No 78
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.03 E-value=1.8e+02 Score=19.02 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=24.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q psy2301 213 EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQG 259 (350)
Q Consensus 213 eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g 259 (350)
.+.+++..+.+.+..+.+.-....+.-.-+++...++..+.+++.+=
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554443
No 79
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=21.00 E-value=23 Score=25.32 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q psy2301 244 RIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLIL 295 (350)
Q Consensus 244 rId~Nve~a~~~v~~g~~eL~kA~~~qk~~rk~~~i~~li~iIiiiii~liv 295 (350)
.++..++...+.++.+..=++.|.+=-++--+..+...+++++++-++.++|
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666555554443333322445555556655555555554
No 80
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.51 E-value=1.2e+02 Score=16.54 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy2301 37 ETQYALPRLENKLKE 51 (350)
Q Consensus 37 ~i~~~i~~i~~~i~~ 51 (350)
++-+.+..++..+.+
T Consensus 5 elykeledlqerlrk 19 (27)
T 3twe_A 5 ELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 81
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.49 E-value=78 Score=20.01 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2301 26 RAAPIWTDALEETQYALPRLENKLKELEKL 55 (350)
Q Consensus 26 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l 55 (350)
++..++...-+++.+.|..+..+++.|...
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777766553
Done!