RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2301
         (350 letters)



>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 196

 Score = 84.4 bits (208), Expect = 5e-20
 Identities = 24/208 (11%), Positives = 69/208 (33%), Gaps = 19/208 (9%)

Query: 31  WTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCH 90
           + + + +    L + ++ + +++ L +  L     ++++     ++    + + +     
Sbjct: 7   FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLK 66

Query: 91  QLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKM 150
             I+  +         +          +      +    +R + S+Y  + K + +R  M
Sbjct: 67  NEIKSAQRDGIHDTNKQ------AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM 120

Query: 151 YFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIR 210
               +   D+                 I           +          +   A+ + R
Sbjct: 121 IIQPEATEDE-------------VEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQAR 167

Query: 211 SQEVDHIVKSIVDLNHLFKDLSHMVVHQ 238
            QE+  + KS+ +L  LF D+  +V+ Q
Sbjct: 168 HQELLKLEKSMAELTQLFNDMEELVIEQ 195


>d1p8kz1 d.95.2.1 (Z:1-125) DNA endonuclease I-AniI {Aspergillus
           nidulans [TaxId: 162425]}
          Length = 125

 Score = 27.6 bits (61), Expect = 1.2
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 70  EQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTN---LQQK 126
           E   K   L  +I ++        +K       A   R+K    + I  +         K
Sbjct: 35  ELSIKDVQLIYKIKKILGIGIVSFRKRNEIEMVALRIRDKNHLKSFILPIFEKYPMFSNK 94

Query: 127 SIQFRSMQSSYLNKIKTREERSKM 150
              +   +++ L+ I + E+    
Sbjct: 95  QYDYLRFRNALLSGIISLEDLPDY 118


>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide
          reductase, C-terminal domain {Salmonella typhimurium
          [TaxId: 90371]}
          Length = 525

 Score = 26.8 bits (58), Expect = 4.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 2  ALMEAGVEMKHRGGIGNTVSYFDSRAAPI 30
          A+  A    K  GG+   +S      API
Sbjct: 19 AVNSALQLSKRGGGVAFLLSNLREAGAPI 47


>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide
          reductase, C-terminal domain {Escherichia coli [TaxId:
          562]}
          Length = 525

 Score = 26.4 bits (57), Expect = 6.9
 Identities = 6/29 (20%), Positives = 9/29 (31%)

Query: 2  ALMEAGVEMKHRGGIGNTVSYFDSRAAPI 30
                  +  R GIG       +  +PI
Sbjct: 19 TSSAIVKYVSQRAGIGINAGRIRALGSPI 47


>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 214

 Score = 25.6 bits (55), Expect = 8.0
 Identities = 20/162 (12%), Positives = 41/162 (25%), Gaps = 6/162 (3%)

Query: 115 VISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQEND 174
             + L   LQ      +  + S        E  +   F         + S       +  
Sbjct: 19  QCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKI 78

Query: 175 NEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHM 234
            + +             +       +  N        Q    ++K  + L    +D+ + 
Sbjct: 79  KKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNN 138

Query: 235 VVHQGTILDRIDYNVERTEI--EVKQGYQQLAKAERYHRKNR 274
               G   +R     E  +   +VKQ + +L   E       
Sbjct: 139 AEKSGFGDERY----ETVKFQEKVKQTFMKLLDKEIRKGDES 176


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,205,643
Number of extensions: 53496
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 15
Length of query: 350
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,226,816
Effective search space: 323879424
Effective search space used: 323879424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)