Query psy2302
Match_columns 292
No_of_seqs 222 out of 2155
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:15:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2336|consensus 100.0 7.4E-66 1.6E-70 450.3 16.8 288 1-288 66-361 (422)
2 PRK05690 molybdopterin biosynt 100.0 3.4E-50 7.4E-55 358.8 24.6 224 2-243 18-245 (245)
3 TIGR02355 moeB molybdopterin s 100.0 6.4E-50 1.4E-54 355.7 26.0 227 2-248 10-240 (240)
4 PRK07411 hypothetical protein; 100.0 6E-50 1.3E-54 378.9 25.4 232 1-250 23-257 (390)
5 PRK05597 molybdopterin biosynt 100.0 4.8E-49 1E-53 368.7 24.6 227 2-244 14-243 (355)
6 PRK12475 thiamine/molybdopteri 100.0 1E-48 2.2E-53 363.7 26.3 230 2-251 10-246 (338)
7 PRK07688 thiamine/molybdopteri 100.0 5.2E-48 1.1E-52 359.1 25.6 230 2-251 10-246 (339)
8 PRK07878 molybdopterin biosynt 100.0 4.4E-48 9.6E-53 366.7 25.3 227 2-244 28-261 (392)
9 PRK05600 thiamine biosynthesis 100.0 5E-48 1.1E-52 362.9 24.9 232 2-251 27-264 (370)
10 KOG2017|consensus 100.0 4.2E-49 9.1E-54 353.5 14.3 234 1-252 51-288 (427)
11 PRK08223 hypothetical protein; 100.0 1.7E-47 3.7E-52 344.6 24.6 223 5-239 16-266 (287)
12 PRK08762 molybdopterin biosynt 100.0 3.3E-47 7.2E-52 359.4 25.9 232 2-251 121-359 (376)
13 cd00757 ThiF_MoeB_HesA_family 100.0 8.3E-47 1.8E-51 333.9 25.1 219 2-237 7-228 (228)
14 PRK08328 hypothetical protein; 100.0 1.9E-45 4.2E-50 325.6 24.0 212 5-237 16-231 (231)
15 TIGR02356 adenyl_thiF thiazole 100.0 4E-44 8.7E-49 311.2 19.9 194 2-213 7-202 (202)
16 TIGR03603 cyclo_dehy_ocin bact 100.0 1.7E-42 3.6E-47 319.3 19.6 220 2-252 60-298 (318)
17 COG0476 ThiF Dinucleotide-util 100.0 1.8E-41 3.9E-46 304.5 22.7 231 2-249 16-253 (254)
18 cd01488 Uba3_RUB Ubiquitin act 100.0 3E-40 6.4E-45 299.4 23.7 218 19-249 1-291 (291)
19 cd01492 Aos1_SUMO Ubiquitin ac 100.0 3.9E-39 8.4E-44 278.7 21.2 184 3-231 8-193 (197)
20 cd01485 E1-1_like Ubiquitin ac 100.0 1.4E-38 3.1E-43 275.5 22.4 183 3-230 6-193 (198)
21 PRK08644 thiamine biosynthesis 100.0 4.6E-38 1E-42 274.8 19.3 194 3-218 15-211 (212)
22 TIGR01381 E1_like_apg7 E1-like 100.0 7.2E-38 1.6E-42 305.1 22.2 238 2-258 327-620 (664)
23 cd01489 Uba2_SUMO Ubiquitin ac 100.0 3.3E-37 7.2E-42 282.2 20.9 144 19-171 1-145 (312)
24 cd01484 E1-2_like Ubiquitin ac 100.0 6.9E-37 1.5E-41 270.4 19.2 144 19-171 1-146 (234)
25 PRK14852 hypothetical protein; 100.0 2E-36 4.4E-41 306.5 21.5 220 4-235 320-566 (989)
26 PRK14851 hypothetical protein; 100.0 3.4E-36 7.4E-41 300.3 22.1 221 5-237 32-279 (679)
27 KOG2015|consensus 100.0 1.8E-35 4E-40 263.5 16.8 230 10-252 33-338 (422)
28 PRK07877 hypothetical protein; 100.0 4.1E-35 8.9E-40 293.4 20.8 208 5-227 96-335 (722)
29 cd01491 Ube1_repeat1 Ubiquitin 100.0 2.6E-34 5.6E-39 260.2 19.7 151 3-171 6-157 (286)
30 cd01487 E1_ThiF_like E1_ThiF_l 100.0 1.9E-34 4.1E-39 244.8 17.4 171 19-210 1-174 (174)
31 TIGR02354 thiF_fam2 thiamine b 100.0 2.4E-34 5.1E-39 249.2 18.1 188 3-213 8-200 (200)
32 cd01486 Apg7 Apg7 is an E1-lik 100.0 1.6E-33 3.5E-38 254.2 22.0 226 19-259 1-287 (307)
33 PF00899 ThiF: ThiF family; I 100.0 1.4E-31 3.1E-36 218.1 15.9 133 16-158 1-134 (135)
34 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 3.5E-31 7.5E-36 234.6 19.5 210 15-237 9-243 (244)
35 cd00755 YgdL_like Family of ac 100.0 1.3E-31 2.9E-36 236.4 15.7 136 6-149 1-137 (231)
36 KOG2013|consensus 100.0 2.4E-32 5.1E-37 254.2 11.3 155 8-171 3-158 (603)
37 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.7E-31 3.6E-36 253.4 17.1 147 19-171 1-153 (435)
38 TIGR01408 Ube1 ubiquitin-activ 100.0 5.2E-31 1.1E-35 272.3 17.8 158 4-171 407-573 (1008)
39 COG1179 Dinucleotide-utilizing 100.0 1E-30 2.3E-35 226.3 12.7 137 5-149 19-156 (263)
40 PRK15116 sulfur acceptor prote 100.0 2.7E-30 5.9E-35 232.0 15.0 138 4-149 18-156 (268)
41 cd01483 E1_enzyme_family Super 100.0 1.7E-29 3.7E-34 207.6 16.1 132 19-160 1-133 (143)
42 PRK06153 hypothetical protein; 100.0 6.2E-29 1.3E-33 230.9 17.9 135 3-148 162-300 (393)
43 cd01493 APPBP1_RUB Ubiquitin a 100.0 4.1E-28 8.9E-33 231.0 13.7 150 3-162 7-158 (425)
44 TIGR01408 Ube1 ubiquitin-activ 99.9 4.7E-27 1E-31 243.0 15.8 151 3-171 11-164 (1008)
45 KOG2014|consensus 99.9 4.1E-25 8.9E-30 196.0 16.9 218 3-232 18-323 (331)
46 TIGR03693 ocin_ThiF_like putat 99.9 2.3E-25 5.1E-30 215.8 16.3 210 10-251 122-337 (637)
47 KOG2018|consensus 99.9 3.5E-24 7.5E-29 190.9 9.4 132 6-145 64-196 (430)
48 PTZ00245 ubiquitin activating 99.9 1E-23 2.2E-28 184.7 10.8 105 5-124 15-119 (287)
49 KOG2012|consensus 99.9 6.3E-24 1.4E-28 208.3 7.9 155 6-169 420-582 (1013)
50 KOG2337|consensus 99.8 1.3E-20 2.8E-25 177.4 13.6 240 13-257 336-627 (669)
51 KOG2012|consensus 99.8 2.3E-18 5E-23 169.5 10.1 131 6-149 27-158 (1013)
52 KOG2016|consensus 99.8 1.9E-18 4E-23 160.4 8.2 150 3-161 14-164 (523)
53 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.7 1E-16 2.2E-21 120.0 4.6 81 162-251 1-83 (84)
54 TIGR03882 cyclo_dehyd_2 bacter 98.8 2E-08 4.4E-13 86.6 8.9 95 10-170 98-193 (193)
55 COG4015 Predicted dinucleotide 98.7 3.1E-07 6.8E-12 75.7 12.7 117 17-145 18-140 (217)
56 COG1748 LYS9 Saccharopine dehy 98.5 1.1E-06 2.3E-11 83.2 11.5 101 18-149 2-102 (389)
57 PRK12549 shikimate 5-dehydroge 98.2 6.1E-06 1.3E-10 75.4 9.2 77 15-123 125-201 (284)
58 PF01488 Shikimate_DH: Shikima 98.2 1E-05 2.2E-10 65.7 8.8 79 14-126 9-87 (135)
59 PRK06718 precorrin-2 dehydroge 98.1 3.4E-05 7.4E-10 67.0 10.4 92 14-143 7-98 (202)
60 PF03435 Saccharop_dh: Sacchar 97.9 5.6E-05 1.2E-09 71.8 10.3 96 20-145 1-97 (386)
61 TIGR01470 cysG_Nterm siroheme 97.9 0.0001 2.2E-09 64.3 10.7 95 14-145 6-100 (205)
62 PF13241 NAD_binding_7: Putati 97.9 2.6E-05 5.6E-10 60.4 5.1 89 14-146 4-92 (103)
63 PRK12548 shikimate 5-dehydroge 97.8 9.4E-05 2E-09 67.8 8.7 85 15-123 124-208 (289)
64 PRK06719 precorrin-2 dehydroge 97.8 0.0002 4.2E-09 59.8 9.7 85 14-138 10-94 (157)
65 PRK14027 quinate/shikimate deh 97.7 0.00019 4.1E-09 65.6 9.3 79 15-123 125-203 (283)
66 PRK05562 precorrin-2 dehydroge 97.6 0.00095 2.1E-08 58.8 11.4 95 14-145 22-116 (223)
67 PRK12749 quinate/shikimate deh 97.6 0.00023 5E-09 65.2 7.7 84 15-123 122-205 (288)
68 COG0569 TrkA K+ transport syst 97.6 0.00092 2E-08 59.1 11.3 98 18-147 1-100 (225)
69 TIGR01809 Shik-DH-AROM shikima 97.4 0.00048 1E-08 62.9 7.6 78 15-124 123-200 (282)
70 COG1648 CysG Siroheme synthase 97.3 0.0012 2.5E-08 57.8 8.8 94 14-144 9-102 (210)
71 COG0373 HemA Glutamyl-tRNA red 97.3 0.00063 1.4E-08 65.0 7.5 76 14-126 175-250 (414)
72 PRK06197 short chain dehydroge 97.2 0.002 4.2E-08 59.0 9.5 99 4-122 4-103 (306)
73 COG0169 AroE Shikimate 5-dehyd 97.2 0.0017 3.7E-08 59.3 8.2 76 16-124 125-200 (283)
74 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0024 5.3E-08 59.1 9.1 83 15-134 176-258 (311)
75 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.0021 4.5E-08 55.2 7.9 84 14-126 25-109 (194)
76 PRK09242 tropinone reductase; 97.1 0.0039 8.5E-08 55.2 9.7 91 14-123 6-97 (257)
77 KOG4169|consensus 97.1 0.0015 3.2E-08 57.4 6.6 88 15-122 3-91 (261)
78 PLN02819 lysine-ketoglutarate 97.1 0.0035 7.6E-08 66.4 10.4 98 16-145 568-678 (1042)
79 PRK00258 aroE shikimate 5-dehy 97.1 0.0021 4.5E-08 58.5 7.7 37 14-50 120-156 (278)
80 cd05291 HicDH_like L-2-hydroxy 97.0 0.0035 7.6E-08 57.9 9.2 33 18-50 1-34 (306)
81 cd01075 NAD_bind_Leu_Phe_Val_D 97.0 0.0049 1.1E-07 53.4 9.3 113 14-145 25-138 (200)
82 PRK13940 glutamyl-tRNA reducta 97.0 0.0023 5E-08 61.6 7.8 77 14-126 178-254 (414)
83 PRK07062 short chain dehydroge 97.0 0.0056 1.2E-07 54.5 9.9 91 14-123 5-96 (265)
84 PF01113 DapB_N: Dihydrodipico 97.0 0.0038 8.2E-08 49.9 7.8 94 19-145 2-97 (124)
85 PRK10637 cysG siroheme synthas 97.0 0.0065 1.4E-07 59.3 10.8 95 14-145 9-103 (457)
86 cd01065 NAD_bind_Shikimate_DH 96.9 0.0031 6.7E-08 51.6 7.1 36 15-50 17-52 (155)
87 PF01210 NAD_Gly3P_dh_N: NAD-d 96.9 0.0037 8.1E-08 51.9 7.6 98 19-145 1-102 (157)
88 cd01080 NAD_bind_m-THF_DH_Cycl 96.9 0.0025 5.4E-08 53.8 6.4 35 14-49 41-76 (168)
89 PRK07063 short chain dehydroge 96.9 0.006 1.3E-07 54.1 9.2 91 14-123 4-95 (260)
90 PF00056 Ldh_1_N: lactate/mala 96.9 0.0049 1.1E-07 50.4 7.9 75 18-124 1-79 (141)
91 cd05311 NAD_bind_2_malic_enz N 96.8 0.001 2.2E-08 58.8 3.5 37 14-50 22-60 (226)
92 PRK00066 ldh L-lactate dehydro 96.8 0.0078 1.7E-07 55.9 9.5 77 16-124 5-83 (315)
93 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0032 6.9E-08 60.7 7.0 37 14-50 177-213 (417)
94 PRK07831 short chain dehydroge 96.8 0.0085 1.8E-07 53.3 9.2 91 14-123 14-106 (262)
95 cd05290 LDH_3 A subgroup of L- 96.7 0.011 2.3E-07 54.8 9.5 74 19-124 1-78 (307)
96 PTZ00082 L-lactate dehydrogena 96.7 0.0027 5.9E-08 59.1 5.6 37 15-51 4-40 (321)
97 PRK05875 short chain dehydroge 96.7 0.0082 1.8E-07 53.8 8.5 91 14-123 4-95 (276)
98 PF03807 F420_oxidored: NADP o 96.7 0.0049 1.1E-07 46.3 6.0 88 19-144 1-92 (96)
99 PRK14192 bifunctional 5,10-met 96.7 0.0026 5.7E-08 58.1 5.1 34 14-48 156-190 (283)
100 PRK14106 murD UDP-N-acetylmura 96.7 0.0097 2.1E-07 57.6 9.4 36 15-51 3-38 (450)
101 PRK05854 short chain dehydroge 96.6 0.015 3.2E-07 53.7 10.0 90 14-122 11-101 (313)
102 PRK08251 short chain dehydroge 96.6 0.017 3.7E-07 50.7 10.0 87 17-122 2-89 (248)
103 PRK12550 shikimate 5-dehydroge 96.6 0.0063 1.4E-07 55.3 7.1 34 17-50 122-155 (272)
104 PTZ00117 malate dehydrogenase; 96.6 0.0048 1E-07 57.4 6.2 36 15-50 3-38 (319)
105 PRK07523 gluconate 5-dehydroge 96.6 0.016 3.5E-07 51.2 9.3 89 14-123 7-96 (255)
106 PRK08217 fabG 3-ketoacyl-(acyl 96.5 0.017 3.8E-07 50.5 9.3 88 15-123 3-91 (253)
107 PF00106 adh_short: short chai 96.5 0.0086 1.9E-07 49.2 6.8 88 18-123 1-89 (167)
108 COG1086 Predicted nucleoside-d 96.5 0.054 1.2E-06 53.5 13.2 89 11-122 244-333 (588)
109 PRK07231 fabG 3-ketoacyl-(acyl 96.5 0.013 2.8E-07 51.3 8.3 87 15-123 3-90 (251)
110 PRK00045 hemA glutamyl-tRNA re 96.5 0.0069 1.5E-07 58.5 7.0 36 15-50 180-215 (423)
111 PF02254 TrkA_N: TrkA-N domain 96.5 0.031 6.7E-07 43.4 9.6 87 20-139 1-87 (116)
112 PRK09496 trkA potassium transp 96.5 0.026 5.6E-07 54.5 11.0 93 18-142 1-94 (453)
113 PLN00203 glutamyl-tRNA reducta 96.5 0.0093 2E-07 59.0 7.8 78 15-126 264-341 (519)
114 TIGR01832 kduD 2-deoxy-D-gluco 96.4 0.016 3.5E-07 50.8 8.6 86 15-123 3-89 (248)
115 PF03446 NAD_binding_2: NAD bi 96.4 0.0069 1.5E-07 50.5 5.7 118 18-149 2-122 (163)
116 cd05211 NAD_bind_Glu_Leu_Phe_V 96.4 0.014 3E-07 51.3 7.8 38 14-51 20-57 (217)
117 PRK09186 flagellin modificatio 96.4 0.021 4.5E-07 50.3 9.0 89 15-122 2-91 (256)
118 PRK05867 short chain dehydroge 96.4 0.02 4.3E-07 50.6 8.9 87 15-122 7-94 (253)
119 PRK12826 3-ketoacyl-(acyl-carr 96.4 0.019 4.2E-07 50.1 8.7 87 15-122 4-91 (251)
120 PTZ00142 6-phosphogluconate de 96.4 0.014 3E-07 57.1 8.2 125 18-150 2-130 (470)
121 PRK09599 6-phosphogluconate de 96.3 0.018 4E-07 52.9 8.6 119 19-149 2-122 (301)
122 PRK04148 hypothetical protein; 96.3 0.047 1E-06 44.3 9.9 97 16-149 16-112 (134)
123 PRK06194 hypothetical protein; 96.3 0.025 5.5E-07 50.9 9.4 88 15-123 4-92 (287)
124 PRK06949 short chain dehydroge 96.3 0.026 5.7E-07 49.7 9.3 88 15-123 7-95 (258)
125 PRK12384 sorbitol-6-phosphate 96.3 0.032 7E-07 49.3 9.8 88 17-123 2-90 (259)
126 PRK08277 D-mannonate oxidoredu 96.3 0.027 5.9E-07 50.5 9.4 89 14-123 7-96 (278)
127 TIGR02853 spore_dpaA dipicolin 96.3 0.0091 2E-07 54.7 6.4 35 14-49 148-182 (287)
128 PRK08594 enoyl-(acyl carrier p 96.3 0.021 4.6E-07 50.9 8.7 89 14-122 4-95 (257)
129 PRK09496 trkA potassium transp 96.3 0.033 7.2E-07 53.8 10.6 96 15-141 229-324 (453)
130 PRK07478 short chain dehydroge 96.3 0.026 5.7E-07 49.8 9.1 88 15-123 4-92 (254)
131 cd00300 LDH_like L-lactate deh 96.3 0.021 4.5E-07 52.6 8.7 72 20-124 1-76 (300)
132 PRK05476 S-adenosyl-L-homocyst 96.3 0.025 5.4E-07 54.6 9.4 37 14-51 209-245 (425)
133 PRK07984 enoyl-(acyl carrier p 96.3 0.026 5.7E-07 50.7 9.0 87 15-123 4-93 (262)
134 PRK08339 short chain dehydroge 96.3 0.035 7.6E-07 49.6 9.8 88 15-123 6-94 (263)
135 cd05293 LDH_1 A subgroup of L- 96.3 0.024 5.3E-07 52.5 8.9 74 17-123 3-80 (312)
136 PRK05872 short chain dehydroge 96.2 0.032 6.9E-07 50.9 9.5 88 14-123 6-94 (296)
137 PLN02350 phosphogluconate dehy 96.2 0.052 1.1E-06 53.4 11.5 125 18-150 7-136 (493)
138 PRK06223 malate dehydrogenase; 96.2 0.01 2.2E-07 54.6 6.3 32 18-49 3-34 (307)
139 PRK06138 short chain dehydroge 96.2 0.026 5.7E-07 49.5 8.6 87 15-123 3-90 (252)
140 PLN02602 lactate dehydrogenase 96.2 0.023 5E-07 53.5 8.6 32 18-49 38-70 (350)
141 PRK03562 glutathione-regulated 96.2 0.033 7.1E-07 56.5 10.2 90 17-139 400-489 (621)
142 PRK05866 short chain dehydroge 96.2 0.033 7.2E-07 50.8 9.3 89 14-123 37-126 (293)
143 TIGR00518 alaDH alanine dehydr 96.2 0.017 3.7E-07 54.8 7.7 35 15-50 165-199 (370)
144 cd05312 NAD_bind_1_malic_enz N 96.2 0.024 5.2E-07 51.6 8.1 105 14-145 22-138 (279)
145 PRK12939 short chain dehydroge 96.2 0.037 7.9E-07 48.4 9.3 88 15-123 5-93 (250)
146 PRK07576 short chain dehydroge 96.2 0.027 5.9E-07 50.3 8.6 88 14-122 6-94 (264)
147 PRK08213 gluconate 5-dehydroge 96.1 0.035 7.6E-07 49.1 9.0 89 14-123 9-98 (259)
148 PRK12823 benD 1,6-dihydroxycyc 96.1 0.035 7.6E-07 49.1 9.0 88 13-122 4-92 (260)
149 PRK06079 enoyl-(acyl carrier p 96.1 0.025 5.5E-07 50.2 8.1 86 14-123 4-92 (252)
150 PRK06139 short chain dehydroge 96.1 0.031 6.8E-07 52.1 9.0 89 14-123 4-93 (330)
151 cd00401 AdoHcyase S-adenosyl-L 96.1 0.032 6.9E-07 53.7 9.1 36 15-51 200-235 (413)
152 PRK05876 short chain dehydroge 96.1 0.04 8.7E-07 49.7 9.3 87 15-122 4-91 (275)
153 PRK13394 3-hydroxybutyrate deh 96.1 0.039 8.4E-07 48.7 9.0 88 15-123 5-93 (262)
154 PRK08589 short chain dehydroge 96.1 0.036 7.7E-07 49.8 8.9 87 14-122 3-90 (272)
155 cd05191 NAD_bind_amino_acid_DH 96.1 0.012 2.5E-07 43.8 4.7 38 14-51 20-57 (86)
156 PF13460 NAD_binding_10: NADH( 96.1 0.13 2.7E-06 43.0 11.7 88 20-143 1-93 (183)
157 PRK06940 short chain dehydroge 96.0 0.056 1.2E-06 48.7 10.0 84 17-123 2-85 (275)
158 PRK06198 short chain dehydroge 96.0 0.041 8.8E-07 48.6 9.0 90 14-123 3-93 (260)
159 TIGR00507 aroE shikimate 5-deh 96.0 0.033 7.2E-07 50.4 8.5 34 15-49 115-148 (270)
160 PRK08416 7-alpha-hydroxysteroi 96.0 0.037 7.9E-07 49.2 8.7 90 14-122 5-95 (260)
161 PRK06522 2-dehydropantoate 2-r 96.0 0.039 8.5E-07 50.2 9.0 31 19-50 2-32 (304)
162 COG0300 DltE Short-chain dehyd 96.0 0.061 1.3E-06 48.6 9.9 88 15-122 4-92 (265)
163 PRK06181 short chain dehydroge 96.0 0.048 1E-06 48.3 9.3 85 18-123 2-87 (263)
164 PRK08618 ornithine cyclodeamin 96.0 0.043 9.3E-07 51.1 9.2 94 16-145 126-220 (325)
165 PRK08265 short chain dehydroge 96.0 0.036 7.9E-07 49.3 8.5 86 14-123 3-89 (261)
166 PRK05708 2-dehydropantoate 2-r 96.0 0.039 8.5E-07 50.9 8.8 33 17-50 2-34 (305)
167 cd01076 NAD_bind_1_Glu_DH NAD( 95.9 0.032 6.9E-07 49.4 7.7 37 14-50 28-64 (227)
168 PRK06125 short chain dehydroge 95.9 0.081 1.8E-06 46.9 10.4 86 14-123 4-90 (259)
169 TIGR02992 ectoine_eutC ectoine 95.9 0.053 1.2E-06 50.5 9.5 76 17-125 129-205 (326)
170 TIGR03589 PseB UDP-N-acetylglu 95.9 0.068 1.5E-06 49.5 10.1 79 15-122 2-82 (324)
171 COG1063 Tdh Threonine dehydrog 95.9 0.064 1.4E-06 50.4 10.0 99 16-142 168-266 (350)
172 PRK08293 3-hydroxybutyryl-CoA 95.9 0.08 1.7E-06 48.2 10.4 33 18-51 4-36 (287)
173 PLN02253 xanthoxin dehydrogena 95.9 0.045 9.8E-07 49.1 8.7 88 14-123 15-103 (280)
174 PF02719 Polysacc_synt_2: Poly 95.9 0.03 6.6E-07 51.3 7.5 99 20-141 1-121 (293)
175 PRK06130 3-hydroxybutyryl-CoA 95.9 0.036 7.8E-07 51.0 8.2 33 18-51 5-37 (311)
176 PRK07109 short chain dehydroge 95.9 0.051 1.1E-06 50.6 9.2 89 14-123 5-94 (334)
177 TIGR00873 gnd 6-phosphoglucona 95.9 0.049 1.1E-06 53.3 9.4 124 19-149 1-126 (467)
178 PRK06172 short chain dehydroge 95.9 0.056 1.2E-06 47.6 9.1 88 15-123 5-93 (253)
179 PRK07502 cyclohexadienyl dehyd 95.9 0.067 1.4E-06 49.2 9.9 33 18-50 7-40 (307)
180 PRK01438 murD UDP-N-acetylmura 95.8 0.042 9.1E-07 53.7 8.9 36 14-50 13-48 (480)
181 PRK03659 glutathione-regulated 95.8 0.06 1.3E-06 54.4 10.2 90 17-139 400-489 (601)
182 PRK00094 gpsA NAD(P)H-dependen 95.8 0.039 8.4E-07 50.8 8.3 32 19-51 3-34 (325)
183 PRK06196 oxidoreductase; Provi 95.8 0.047 1E-06 50.1 8.8 85 14-123 23-108 (315)
184 PRK00048 dihydrodipicolinate r 95.8 0.043 9.3E-07 49.4 8.2 87 18-145 2-90 (257)
185 PRK07774 short chain dehydroge 95.8 0.056 1.2E-06 47.4 8.9 88 15-123 4-92 (250)
186 PRK06057 short chain dehydroge 95.8 0.021 4.5E-07 50.6 6.1 35 14-49 4-39 (255)
187 PRK06935 2-deoxy-D-gluconate 3 95.8 0.059 1.3E-06 47.7 9.0 89 13-123 11-100 (258)
188 KOG0024|consensus 95.8 0.16 3.5E-06 47.0 11.7 100 16-140 169-268 (354)
189 PRK13304 L-aspartate dehydroge 95.8 0.058 1.3E-06 48.7 9.0 33 18-50 2-36 (265)
190 PRK07326 short chain dehydroge 95.8 0.055 1.2E-06 47.0 8.6 87 15-123 4-91 (237)
191 PRK12829 short chain dehydroge 95.8 0.041 8.9E-07 48.6 7.9 88 13-123 7-95 (264)
192 PRK07634 pyrroline-5-carboxyla 95.8 0.062 1.4E-06 47.5 9.1 82 16-135 3-87 (245)
193 PRK08303 short chain dehydroge 95.8 0.071 1.5E-06 49.0 9.7 97 14-122 5-103 (305)
194 PRK08085 gluconate 5-dehydroge 95.8 0.07 1.5E-06 47.0 9.4 89 14-123 6-95 (254)
195 PF10727 Rossmann-like: Rossma 95.8 0.011 2.3E-07 47.6 3.7 81 17-136 10-90 (127)
196 PRK07792 fabG 3-ketoacyl-(acyl 95.8 0.073 1.6E-06 48.8 9.8 88 14-122 9-97 (306)
197 TIGR01757 Malate-DH_plant mala 95.8 0.04 8.6E-07 52.6 8.1 77 18-124 45-130 (387)
198 PF00070 Pyr_redox: Pyridine n 95.8 0.053 1.2E-06 39.4 7.1 58 19-89 1-58 (80)
199 PRK11880 pyrroline-5-carboxyla 95.8 0.052 1.1E-06 48.7 8.5 32 18-49 3-36 (267)
200 PF01408 GFO_IDH_MocA: Oxidore 95.7 0.036 7.7E-07 43.2 6.5 86 19-142 2-89 (120)
201 PRK07890 short chain dehydroge 95.7 0.069 1.5E-06 47.0 9.2 88 15-123 3-91 (258)
202 PRK14619 NAD(P)H-dependent gly 95.7 0.049 1.1E-06 50.2 8.4 33 17-50 4-36 (308)
203 PLN02427 UDP-apiose/xylose syn 95.7 0.092 2E-06 49.7 10.5 108 14-147 11-136 (386)
204 COG0240 GpsA Glycerol-3-phosph 95.7 0.022 4.7E-07 52.9 5.9 90 18-134 2-91 (329)
205 PRK06124 gluconate 5-dehydroge 95.7 0.076 1.7E-06 46.8 9.3 89 14-123 8-97 (256)
206 PRK07035 short chain dehydroge 95.7 0.079 1.7E-06 46.6 9.3 89 14-123 5-94 (252)
207 PRK12429 3-hydroxybutyrate deh 95.7 0.079 1.7E-06 46.5 9.3 88 15-123 2-90 (258)
208 PRK07806 short chain dehydroge 95.7 0.076 1.6E-06 46.5 9.1 88 15-122 4-92 (248)
209 PRK12439 NAD(P)H-dependent gly 95.7 0.041 8.8E-07 51.6 7.7 32 17-50 7-38 (341)
210 PRK07453 protochlorophyllide o 95.7 0.074 1.6E-06 49.0 9.3 88 15-123 4-92 (322)
211 PRK07680 late competence prote 95.6 0.086 1.9E-06 47.6 9.5 32 19-50 2-36 (273)
212 PRK12937 short chain dehydroge 95.6 0.068 1.5E-06 46.6 8.6 89 15-123 3-92 (245)
213 PRK12490 6-phosphogluconate de 95.6 0.072 1.6E-06 48.9 9.1 119 19-149 2-122 (299)
214 PRK06841 short chain dehydroge 95.6 0.071 1.5E-06 46.9 8.7 86 14-123 12-98 (255)
215 PRK05565 fabG 3-ketoacyl-(acyl 95.6 0.069 1.5E-06 46.5 8.5 89 15-123 3-92 (247)
216 PRK06914 short chain dehydroge 95.6 0.08 1.7E-06 47.4 9.1 88 16-123 2-90 (280)
217 PRK12744 short chain dehydroge 95.6 0.091 2E-06 46.5 9.3 92 15-123 6-98 (257)
218 KOG1201|consensus 95.6 0.086 1.9E-06 48.2 9.0 90 11-122 32-122 (300)
219 TIGR01202 bchC 2-desacetyl-2-h 95.6 0.066 1.4E-06 49.1 8.6 34 16-49 144-177 (308)
220 PRK07889 enoyl-(acyl carrier p 95.6 0.051 1.1E-06 48.4 7.6 35 14-49 4-41 (256)
221 PRK06500 short chain dehydroge 95.6 0.065 1.4E-06 46.9 8.2 35 14-49 3-38 (249)
222 PF08659 KR: KR domain; Inter 95.6 0.15 3.2E-06 43.1 10.1 87 19-122 2-89 (181)
223 TIGR00715 precor6x_red precorr 95.6 0.12 2.6E-06 46.6 9.9 95 18-144 1-97 (256)
224 PRK06128 oxidoreductase; Provi 95.6 0.078 1.7E-06 48.3 9.0 92 13-123 51-143 (300)
225 PRK07666 fabG 3-ketoacyl-(acyl 95.5 0.086 1.9E-06 46.0 8.9 88 14-122 4-92 (239)
226 PRK08063 enoyl-(acyl carrier p 95.5 0.066 1.4E-06 46.9 8.2 89 15-123 2-91 (250)
227 PRK14175 bifunctional 5,10-met 95.5 0.029 6.3E-07 51.3 6.0 34 14-48 155-189 (286)
228 PRK12367 short chain dehydroge 95.5 0.095 2.1E-06 46.6 9.2 40 10-50 7-47 (245)
229 PRK08264 short chain dehydroge 95.5 0.098 2.1E-06 45.5 9.2 36 15-50 4-40 (238)
230 PRK07067 sorbitol dehydrogenas 95.5 0.079 1.7E-06 46.8 8.7 84 15-122 4-88 (257)
231 PRK07814 short chain dehydroge 95.5 0.095 2.1E-06 46.6 9.3 88 15-123 8-96 (263)
232 PRK08415 enoyl-(acyl carrier p 95.5 0.092 2E-06 47.4 9.3 87 15-123 3-92 (274)
233 PRK11908 NAD-dependent epimera 95.5 0.2 4.4E-06 46.5 11.8 32 18-49 2-34 (347)
234 PRK06141 ornithine cyclodeamin 95.5 0.072 1.6E-06 49.4 8.7 78 14-125 122-200 (314)
235 TIGR00872 gnd_rel 6-phosphoglu 95.5 0.05 1.1E-06 50.0 7.6 118 19-149 2-121 (298)
236 TIGR00936 ahcY adenosylhomocys 95.5 0.086 1.9E-06 50.6 9.3 36 15-51 193-228 (406)
237 TIGR03206 benzo_BadH 2-hydroxy 95.5 0.091 2E-06 46.0 9.0 88 15-123 1-89 (250)
238 PRK08159 enoyl-(acyl carrier p 95.5 0.048 1E-06 49.1 7.3 88 13-122 6-96 (272)
239 PRK06476 pyrroline-5-carboxyla 95.5 0.092 2E-06 47.0 9.1 23 19-41 2-24 (258)
240 PRK07024 short chain dehydroge 95.5 0.085 1.8E-06 46.7 8.8 85 17-123 2-87 (257)
241 PRK07060 short chain dehydroge 95.5 0.059 1.3E-06 47.0 7.7 35 14-49 6-41 (245)
242 PRK07677 short chain dehydroge 95.5 0.098 2.1E-06 46.1 9.1 85 17-122 1-86 (252)
243 COG1893 ApbA Ketopantoate redu 95.5 0.037 8.1E-07 51.2 6.6 30 18-48 1-30 (307)
244 PRK08690 enoyl-(acyl carrier p 95.5 0.052 1.1E-06 48.5 7.4 88 14-123 3-93 (261)
245 TIGR03325 BphB_TodD cis-2,3-di 95.5 0.058 1.3E-06 47.9 7.7 34 15-49 3-37 (262)
246 PF01118 Semialdhyde_dh: Semia 95.5 0.14 3.1E-06 40.3 9.1 96 19-147 1-98 (121)
247 PRK12859 3-ketoacyl-(acyl-carr 95.5 0.094 2E-06 46.5 9.0 100 14-123 3-105 (256)
248 TIGR01763 MalateDH_bact malate 95.5 0.038 8.3E-07 51.0 6.6 32 18-49 2-33 (305)
249 PRK07533 enoyl-(acyl carrier p 95.5 0.078 1.7E-06 47.2 8.4 87 14-122 7-96 (258)
250 PRK08291 ectoine utilization p 95.5 0.1 2.3E-06 48.6 9.6 76 17-125 132-208 (330)
251 PRK13403 ketol-acid reductoiso 95.4 0.13 2.7E-06 47.9 9.9 36 12-48 11-46 (335)
252 PRK05717 oxidoreductase; Valid 95.4 0.079 1.7E-06 46.8 8.4 35 14-49 7-42 (255)
253 PTZ00325 malate dehydrogenase; 95.4 0.038 8.2E-07 51.5 6.5 35 15-49 6-42 (321)
254 KOG1205|consensus 95.4 0.095 2.1E-06 47.8 8.8 93 11-122 6-99 (282)
255 PTZ00075 Adenosylhomocysteinas 95.4 0.05 1.1E-06 53.1 7.4 37 14-51 251-287 (476)
256 PRK08226 short chain dehydroge 95.4 0.081 1.8E-06 46.9 8.3 88 14-123 3-91 (263)
257 PLN03209 translocon at the inn 95.4 0.29 6.4E-06 49.0 12.8 83 15-123 78-168 (576)
258 PRK06720 hypothetical protein; 95.4 0.15 3.2E-06 42.9 9.4 36 14-50 13-49 (169)
259 PRK08278 short chain dehydroge 95.4 0.11 2.3E-06 46.7 9.2 95 15-123 4-99 (273)
260 PRK12748 3-ketoacyl-(acyl-carr 95.4 0.11 2.5E-06 45.8 9.2 98 15-122 3-103 (256)
261 PRK08340 glucose-1-dehydrogena 95.4 0.1 2.3E-06 46.2 8.9 83 19-123 2-85 (259)
262 PRK09260 3-hydroxybutyryl-CoA 95.3 0.0053 1.2E-07 56.0 0.5 33 18-51 2-34 (288)
263 PRK07074 short chain dehydroge 95.3 0.11 2.5E-06 45.7 9.1 84 17-123 2-86 (257)
264 PRK12480 D-lactate dehydrogena 95.3 0.093 2E-06 49.0 8.8 36 14-50 143-178 (330)
265 PRK10669 putative cation:proto 95.3 0.13 2.7E-06 51.5 10.2 78 17-127 417-494 (558)
266 PRK07819 3-hydroxybutyryl-CoA 95.3 0.031 6.8E-07 51.1 5.5 33 18-51 6-38 (286)
267 PRK06182 short chain dehydroge 95.3 0.061 1.3E-06 48.1 7.3 81 16-123 2-83 (273)
268 PRK06270 homoserine dehydrogen 95.3 0.14 3.1E-06 47.9 10.0 22 18-39 3-24 (341)
269 PRK07825 short chain dehydroge 95.3 0.04 8.7E-07 49.2 6.0 83 15-122 3-86 (273)
270 TIGR02632 RhaD_aldol-ADH rhamn 95.3 0.1 2.2E-06 53.5 9.6 90 15-123 412-502 (676)
271 PRK06114 short chain dehydroge 95.3 0.12 2.7E-06 45.6 9.1 90 14-123 5-95 (254)
272 PRK06928 pyrroline-5-carboxyla 95.3 0.19 4.2E-06 45.6 10.5 80 19-135 3-85 (277)
273 PRK05855 short chain dehydroge 95.3 0.079 1.7E-06 52.3 8.6 90 13-123 311-401 (582)
274 PRK12938 acetyacetyl-CoA reduc 95.3 0.099 2.1E-06 45.7 8.3 88 16-123 2-90 (246)
275 TIGR03026 NDP-sugDHase nucleot 95.2 0.18 3.9E-06 48.4 10.7 40 19-59 2-41 (411)
276 PRK13303 L-aspartate dehydroge 95.2 0.16 3.5E-06 45.9 9.7 31 18-48 2-33 (265)
277 PRK15469 ghrA bifunctional gly 95.2 0.14 3.1E-06 47.4 9.6 90 14-146 133-226 (312)
278 PRK07340 ornithine cyclodeamin 95.2 0.097 2.1E-06 48.3 8.4 77 14-125 122-199 (304)
279 PRK08628 short chain dehydroge 95.2 0.12 2.7E-06 45.5 8.9 88 14-123 4-92 (258)
280 PRK05786 fabG 3-ketoacyl-(acyl 95.2 0.12 2.7E-06 44.8 8.8 87 15-123 3-90 (238)
281 PRK13302 putative L-aspartate 95.2 0.16 3.6E-06 46.0 9.7 35 16-50 5-41 (271)
282 PRK06200 2,3-dihydroxy-2,3-dih 95.2 0.1 2.2E-06 46.3 8.3 85 15-123 4-89 (263)
283 PRK14620 NAD(P)H-dependent gly 95.2 0.062 1.3E-06 49.8 7.0 32 19-51 2-33 (326)
284 PRK06603 enoyl-(acyl carrier p 95.2 0.12 2.7E-06 46.0 8.7 87 14-122 5-94 (260)
285 PLN02240 UDP-glucose 4-epimera 95.1 0.43 9.4E-06 44.1 12.8 85 15-123 3-90 (352)
286 TIGR03376 glycerol3P_DH glycer 95.1 0.079 1.7E-06 49.8 7.7 102 19-144 1-114 (342)
287 TIGR01759 MalateDH-SF1 malate 95.1 0.082 1.8E-06 49.3 7.7 32 18-49 4-42 (323)
288 PRK07454 short chain dehydroge 95.1 0.17 3.6E-06 44.2 9.4 86 17-123 6-92 (241)
289 PRK06505 enoyl-(acyl carrier p 95.1 0.13 2.8E-06 46.3 8.8 87 15-123 5-94 (271)
290 PRK12491 pyrroline-5-carboxyla 95.1 0.12 2.5E-06 47.0 8.5 80 17-135 2-84 (272)
291 PTZ00345 glycerol-3-phosphate 95.1 0.094 2E-06 49.7 8.2 97 16-135 10-114 (365)
292 PRK07097 gluconate 5-dehydroge 95.1 0.14 2.9E-06 45.6 8.8 89 14-123 7-96 (265)
293 PRK08324 short chain dehydroge 95.1 0.097 2.1E-06 53.6 8.8 86 16-123 421-507 (681)
294 PRK12828 short chain dehydroge 95.1 0.098 2.1E-06 45.2 7.7 36 14-50 4-40 (239)
295 cd01339 LDH-like_MDH L-lactate 95.1 0.039 8.4E-07 50.7 5.3 31 20-50 1-31 (300)
296 PRK09880 L-idonate 5-dehydroge 95.1 0.17 3.7E-06 47.0 9.7 35 16-50 169-203 (343)
297 PRK08057 cobalt-precorrin-6x r 95.0 0.34 7.4E-06 43.4 11.1 93 17-143 2-96 (248)
298 PRK08374 homoserine dehydrogen 95.0 0.2 4.4E-06 46.9 10.1 21 18-38 3-23 (336)
299 PRK08229 2-dehydropantoate 2-r 95.0 0.07 1.5E-06 49.6 7.0 32 18-50 3-34 (341)
300 PRK07679 pyrroline-5-carboxyla 95.0 0.25 5.5E-06 44.8 10.4 25 17-41 3-27 (279)
301 PF03949 Malic_M: Malic enzyme 95.0 0.026 5.7E-07 50.6 3.8 106 14-145 22-139 (255)
302 PRK12825 fabG 3-ketoacyl-(acyl 95.0 0.15 3.3E-06 44.1 8.7 89 15-123 4-93 (249)
303 cd01338 MDH_choloroplast_like 95.0 0.052 1.1E-06 50.6 5.9 33 17-49 2-41 (322)
304 PRK06701 short chain dehydroge 94.9 0.16 3.5E-06 46.2 9.0 90 14-123 43-133 (290)
305 TIGR01289 LPOR light-dependent 94.9 0.2 4.2E-06 46.2 9.7 87 16-122 2-89 (314)
306 PRK07856 short chain dehydroge 94.9 0.095 2.1E-06 46.2 7.3 35 15-50 4-39 (252)
307 PRK07066 3-hydroxybutyryl-CoA 94.9 0.11 2.4E-06 48.3 8.0 33 18-51 8-40 (321)
308 PRK07985 oxidoreductase; Provi 94.9 0.16 3.5E-06 46.2 9.0 90 14-122 46-136 (294)
309 PRK09072 short chain dehydroge 94.9 0.21 4.5E-06 44.3 9.5 86 15-123 3-89 (263)
310 PRK06545 prephenate dehydrogen 94.9 0.13 2.9E-06 48.4 8.6 33 18-51 1-33 (359)
311 PRK08945 putative oxoacyl-(acy 94.9 0.18 3.8E-06 44.3 8.9 37 13-50 8-45 (247)
312 PRK09135 pteridine reductase; 94.9 0.19 4.2E-06 43.7 9.1 89 16-123 5-94 (249)
313 PRK08862 short chain dehydroge 94.9 0.13 2.9E-06 45.0 8.0 87 15-122 3-91 (227)
314 TIGR01915 npdG NADPH-dependent 94.9 0.36 7.8E-06 42.1 10.7 30 19-49 2-32 (219)
315 PF02826 2-Hacid_dh_C: D-isome 94.9 0.044 9.4E-07 46.4 4.7 38 13-51 32-69 (178)
316 PF03721 UDPG_MGDP_dh_N: UDP-g 94.9 0.031 6.7E-07 47.8 3.8 41 18-59 1-41 (185)
317 PRK12936 3-ketoacyl-(acyl-carr 94.8 0.092 2E-06 45.7 6.9 85 15-123 4-89 (245)
318 PRK08643 acetoin reductase; Va 94.8 0.23 5E-06 43.7 9.5 85 17-122 2-87 (256)
319 PRK11579 putative oxidoreducta 94.8 0.25 5.4E-06 46.2 10.2 86 18-143 5-92 (346)
320 TIGR02415 23BDH acetoin reduct 94.8 0.23 5E-06 43.6 9.5 85 18-123 1-86 (254)
321 PF02571 CbiJ: Precorrin-6x re 94.8 0.46 1E-05 42.6 11.3 95 18-143 1-97 (249)
322 PRK12827 short chain dehydroge 94.8 0.21 4.5E-06 43.5 9.0 92 15-123 4-96 (249)
323 PRK00141 murD UDP-N-acetylmura 94.8 0.11 2.5E-06 50.8 8.0 39 10-49 8-46 (473)
324 PRK06113 7-alpha-hydroxysteroi 94.8 0.2 4.3E-06 44.2 8.9 89 14-123 8-97 (255)
325 PRK05653 fabG 3-ketoacyl-(acyl 94.7 0.19 4.1E-06 43.5 8.7 87 15-122 3-90 (246)
326 PF00670 AdoHcyase_NAD: S-aden 94.7 0.13 2.8E-06 43.1 7.1 38 14-52 20-57 (162)
327 PRK08220 2,3-dihydroxybenzoate 94.7 0.13 2.9E-06 45.0 7.7 36 15-51 6-42 (252)
328 PRK07102 short chain dehydroge 94.7 0.31 6.8E-06 42.6 10.1 82 18-122 2-84 (243)
329 PRK12771 putative glutamate sy 94.7 0.15 3.2E-06 51.1 8.9 35 16-51 136-170 (564)
330 PRK14194 bifunctional 5,10-met 94.7 0.053 1.2E-06 49.9 5.2 35 14-49 156-191 (301)
331 PRK12921 2-dehydropantoate 2-r 94.7 0.17 3.7E-06 46.1 8.6 30 19-49 2-31 (305)
332 COG1064 AdhP Zn-dependent alco 94.7 0.38 8.2E-06 45.1 10.8 31 17-48 167-197 (339)
333 PF02558 ApbA: Ketopantoate re 94.7 0.12 2.6E-06 42.0 6.8 31 20-51 1-31 (151)
334 CHL00194 ycf39 Ycf39; Provisio 94.7 0.46 1E-05 43.6 11.5 93 19-145 2-108 (317)
335 PRK07370 enoyl-(acyl carrier p 94.7 0.17 3.7E-06 45.0 8.3 90 15-123 4-96 (258)
336 PRK05650 short chain dehydroge 94.6 0.25 5.4E-06 44.0 9.3 85 18-123 1-86 (270)
337 PRK14618 NAD(P)H-dependent gly 94.6 0.17 3.6E-06 47.0 8.3 32 18-50 5-36 (328)
338 PRK09987 dTDP-4-dehydrorhamnos 94.6 0.21 4.6E-06 45.6 8.9 29 19-49 2-31 (299)
339 cd05294 LDH-like_MDH_nadp A la 94.6 0.048 1E-06 50.5 4.6 33 18-50 1-35 (309)
340 COG1062 AdhC Zn-dependent alco 94.6 0.25 5.4E-06 46.1 9.1 99 16-143 185-283 (366)
341 PRK10538 malonic semialdehyde 94.6 0.24 5.1E-06 43.6 8.9 80 19-122 2-82 (248)
342 PRK15181 Vi polysaccharide bio 94.5 0.34 7.3E-06 45.2 10.3 111 14-147 12-141 (348)
343 PRK05599 hypothetical protein; 94.5 0.25 5.4E-06 43.6 9.0 84 19-123 2-86 (246)
344 COG1712 Predicted dinucleotide 94.5 0.14 3E-06 45.1 7.0 33 19-51 2-36 (255)
345 KOG1200|consensus 94.5 0.26 5.7E-06 42.6 8.5 41 10-51 7-48 (256)
346 COG4221 Short-chain alcohol de 94.5 0.11 2.5E-06 46.1 6.6 86 14-122 3-89 (246)
347 cd00650 LDH_MDH_like NAD-depen 94.5 0.11 2.5E-06 46.7 6.8 32 20-51 1-36 (263)
348 PRK08267 short chain dehydroge 94.5 0.24 5.2E-06 43.8 8.8 83 18-123 2-86 (260)
349 PLN02256 arogenate dehydrogena 94.5 0.3 6.5E-06 45.1 9.6 36 14-50 33-68 (304)
350 PLN02780 ketoreductase/ oxidor 94.4 0.46 9.9E-06 44.0 10.9 62 16-96 52-114 (320)
351 COG0281 SfcA Malic enzyme [Ene 94.4 0.13 2.8E-06 49.1 7.2 56 14-77 196-256 (432)
352 PRK10537 voltage-gated potassi 94.4 0.29 6.2E-06 46.9 9.5 37 16-53 239-275 (393)
353 PRK14030 glutamate dehydrogena 94.4 0.32 6.9E-06 47.2 9.9 37 14-50 225-261 (445)
354 PRK14982 acyl-ACP reductase; P 94.4 0.038 8.3E-07 51.8 3.5 37 14-50 152-190 (340)
355 PRK06997 enoyl-(acyl carrier p 94.4 0.18 3.8E-06 45.0 7.7 87 14-122 3-92 (260)
356 PRK06463 fabG 3-ketoacyl-(acyl 94.4 0.12 2.7E-06 45.5 6.7 83 14-122 4-87 (255)
357 TIGR02622 CDP_4_6_dhtase CDP-g 94.4 0.23 5E-06 46.2 8.7 82 15-123 2-84 (349)
358 cd00762 NAD_bind_malic_enz NAD 94.3 0.035 7.5E-07 49.8 3.0 106 14-145 22-139 (254)
359 PRK12743 oxidoreductase; Provi 94.3 0.27 5.9E-06 43.4 8.8 87 17-123 2-89 (256)
360 PLN02688 pyrroline-5-carboxyla 94.3 0.37 8E-06 43.1 9.7 29 19-47 2-33 (266)
361 PRK14189 bifunctional 5,10-met 94.3 0.064 1.4E-06 49.0 4.7 83 3-148 149-232 (285)
362 PRK08993 2-deoxy-D-gluconate 3 94.3 0.3 6.5E-06 43.1 9.0 86 15-123 8-94 (253)
363 PRK06398 aldose dehydrogenase; 94.3 0.18 3.8E-06 44.8 7.6 36 14-50 3-39 (258)
364 PRK07417 arogenate dehydrogena 94.3 0.23 5E-06 45.1 8.4 32 19-51 2-33 (279)
365 PRK07069 short chain dehydroge 94.3 0.34 7.3E-06 42.3 9.3 87 19-123 1-88 (251)
366 PRK08410 2-hydroxyacid dehydro 94.3 0.13 2.8E-06 47.6 6.8 36 13-49 141-176 (311)
367 PRK12745 3-ketoacyl-(acyl-carr 94.2 0.35 7.5E-06 42.4 9.3 87 17-123 2-89 (256)
368 cd08239 THR_DH_like L-threonin 94.2 0.54 1.2E-05 43.3 10.9 35 16-50 163-197 (339)
369 PRK06947 glucose-1-dehydrogena 94.2 0.32 6.9E-06 42.5 8.9 86 18-123 3-89 (248)
370 PRK06392 homoserine dehydrogen 94.2 0.35 7.7E-06 45.1 9.5 20 19-38 2-21 (326)
371 TIGR01963 PHB_DH 3-hydroxybuty 94.2 0.37 7.9E-06 42.2 9.3 84 18-122 2-86 (255)
372 PRK08936 glucose-1-dehydrogena 94.2 0.31 6.7E-06 43.1 8.8 90 14-123 4-94 (261)
373 PRK08309 short chain dehydroge 94.2 0.86 1.9E-05 38.6 11.1 100 19-141 2-101 (177)
374 COG0111 SerA Phosphoglycerate 94.1 0.12 2.7E-06 48.1 6.4 91 14-146 139-233 (324)
375 TIGR03451 mycoS_dep_FDH mycoth 94.1 0.45 9.8E-06 44.4 10.3 33 17-49 177-209 (358)
376 PTZ00079 NADP-specific glutama 94.1 0.4 8.8E-06 46.6 10.0 37 14-50 234-270 (454)
377 PRK05442 malate dehydrogenase; 94.1 0.14 3.1E-06 47.7 6.7 32 18-49 5-43 (326)
378 COG0039 Mdh Malate/lactate deh 94.1 0.066 1.4E-06 49.5 4.3 33 18-50 1-34 (313)
379 PRK07201 short chain dehydroge 94.0 0.28 6E-06 49.7 9.3 89 14-123 368-457 (657)
380 PRK12742 oxidoreductase; Provi 94.0 0.16 3.5E-06 44.0 6.6 33 14-47 3-36 (237)
381 PRK00811 spermidine synthase; 94.0 0.35 7.6E-06 44.1 9.0 35 16-51 76-110 (283)
382 KOG0069|consensus 94.0 0.087 1.9E-06 49.2 4.9 28 13-40 158-185 (336)
383 PRK05884 short chain dehydroge 94.0 0.21 4.6E-06 43.5 7.2 31 19-50 2-33 (223)
384 PRK06932 glycerate dehydrogena 94.0 0.17 3.7E-06 47.0 6.9 86 13-145 143-232 (314)
385 PRK12769 putative oxidoreducta 93.9 0.37 7.9E-06 49.2 9.9 34 16-50 326-359 (654)
386 PRK14188 bifunctional 5,10-met 93.9 0.11 2.4E-06 47.8 5.5 34 14-48 155-189 (296)
387 KOG2013|consensus 93.9 0.078 1.7E-06 51.3 4.6 63 188-252 377-444 (603)
388 PRK08306 dipicolinate synthase 93.9 0.057 1.2E-06 49.6 3.6 36 14-50 149-184 (296)
389 PRK12481 2-deoxy-D-gluconate 3 93.9 0.35 7.6E-06 42.7 8.6 87 14-123 5-92 (251)
390 PLN02206 UDP-glucuronate decar 93.9 0.58 1.2E-05 45.5 10.7 35 14-49 116-151 (442)
391 TIGR01181 dTDP_gluc_dehyt dTDP 93.9 0.93 2E-05 40.8 11.6 80 19-123 1-82 (317)
392 PRK06171 sorbitol-6-phosphate 93.9 0.25 5.5E-06 43.8 7.7 36 14-50 6-42 (266)
393 cd08281 liver_ADH_like1 Zinc-d 93.9 0.67 1.4E-05 43.5 10.9 33 17-49 192-224 (371)
394 PRK07832 short chain dehydroge 93.8 0.38 8.3E-06 42.9 8.8 86 18-123 1-87 (272)
395 PRK08655 prephenate dehydrogen 93.8 0.32 6.8E-06 47.3 8.8 31 19-50 2-33 (437)
396 PRK07775 short chain dehydroge 93.8 0.51 1.1E-05 42.3 9.6 88 15-123 8-96 (274)
397 TIGR01771 L-LDH-NAD L-lactate 93.8 0.23 4.9E-06 45.8 7.4 28 22-49 1-29 (299)
398 PLN02740 Alcohol dehydrogenase 93.8 0.65 1.4E-05 43.9 10.7 34 17-50 199-232 (381)
399 KOG0022|consensus 93.8 0.52 1.1E-05 43.6 9.4 93 16-138 192-286 (375)
400 PRK01710 murD UDP-N-acetylmura 93.8 0.21 4.6E-06 48.6 7.5 37 14-51 11-47 (458)
401 PRK02705 murD UDP-N-acetylmura 93.8 0.53 1.1E-05 45.7 10.2 33 18-51 1-33 (459)
402 PRK08703 short chain dehydroge 93.7 0.44 9.6E-06 41.5 8.9 34 15-49 4-38 (239)
403 PRK05557 fabG 3-ketoacyl-(acyl 93.7 0.42 9E-06 41.4 8.6 89 15-123 3-92 (248)
404 PLN02353 probable UDP-glucose 93.7 0.21 4.5E-06 49.0 7.2 42 18-59 2-44 (473)
405 PRK12746 short chain dehydroge 93.7 0.25 5.4E-06 43.4 7.2 89 14-122 3-98 (254)
406 PRK06180 short chain dehydroge 93.6 0.35 7.5E-06 43.4 8.2 83 17-123 4-87 (277)
407 cd05296 GH4_P_beta_glucosidase 93.6 0.35 7.6E-06 46.7 8.6 95 19-140 2-103 (419)
408 PRK05993 short chain dehydroge 93.6 0.26 5.6E-06 44.3 7.3 33 17-50 4-37 (277)
409 PRK06179 short chain dehydroge 93.6 0.19 4E-06 44.7 6.3 33 17-50 4-37 (270)
410 PLN03139 formate dehydrogenase 93.5 0.3 6.4E-06 46.7 7.8 35 14-49 196-230 (386)
411 PRK06077 fabG 3-ketoacyl-(acyl 93.5 0.46 9.9E-06 41.5 8.6 89 15-123 4-93 (252)
412 PRK08261 fabG 3-ketoacyl-(acyl 93.5 0.18 4E-06 48.7 6.6 34 14-48 207-241 (450)
413 cd05292 LDH_2 A subgroup of L- 93.5 0.11 2.4E-06 47.9 4.9 33 19-51 2-35 (308)
414 PRK05693 short chain dehydroge 93.5 0.3 6.6E-06 43.6 7.5 32 18-50 2-34 (274)
415 COG0665 DadA Glycine/D-amino a 93.5 0.12 2.6E-06 48.5 5.1 43 16-59 3-45 (387)
416 PRK09730 putative NAD(P)-bindi 93.5 0.62 1.3E-05 40.5 9.4 86 18-123 2-88 (247)
417 cd08230 glucose_DH Glucose deh 93.5 0.3 6.6E-06 45.5 7.8 33 16-49 172-204 (355)
418 PRK05472 redox-sensing transcr 93.4 0.45 9.7E-06 41.5 8.2 89 17-143 84-174 (213)
419 PRK13529 malate dehydrogenase; 93.4 0.36 7.9E-06 48.0 8.3 112 14-145 292-415 (563)
420 PRK07791 short chain dehydroge 93.4 0.49 1.1E-05 42.8 8.8 98 14-123 3-101 (286)
421 smart00846 Gp_dh_N Glyceraldeh 93.4 0.077 1.7E-06 43.8 3.2 106 19-135 2-108 (149)
422 PRK06567 putative bifunctional 93.4 0.5 1.1E-05 50.2 9.7 40 16-56 382-421 (1028)
423 COG2084 MmsB 3-hydroxyisobutyr 93.3 1 2.2E-05 41.3 10.6 120 18-150 1-124 (286)
424 PRK06483 dihydromonapterin red 93.3 0.3 6.5E-06 42.5 7.0 32 17-49 2-34 (236)
425 PRK12935 acetoacetyl-CoA reduc 93.3 0.57 1.2E-05 40.9 8.9 89 15-123 4-93 (247)
426 TIGR03466 HpnA hopanoid-associ 93.3 0.9 2E-05 41.3 10.5 31 19-50 2-33 (328)
427 TIGR03366 HpnZ_proposed putati 93.3 0.65 1.4E-05 41.8 9.4 34 16-49 120-153 (280)
428 PRK14191 bifunctional 5,10-met 93.3 0.14 3.1E-06 46.7 5.0 34 14-48 154-188 (285)
429 PLN03129 NADP-dependent malic 93.3 0.4 8.7E-06 47.9 8.4 103 14-145 318-434 (581)
430 PLN02989 cinnamyl-alcohol dehy 93.2 0.68 1.5E-05 42.4 9.6 80 17-122 5-85 (325)
431 PLN02852 ferredoxin-NADP+ redu 93.2 0.59 1.3E-05 46.1 9.6 42 16-59 25-68 (491)
432 PRK15461 NADH-dependent gamma- 93.2 0.42 9.1E-06 43.8 8.1 118 18-149 2-123 (296)
433 PLN02896 cinnamyl-alcohol dehy 93.2 0.67 1.5E-05 43.2 9.6 78 16-122 9-87 (353)
434 PRK08818 prephenate dehydrogen 93.2 0.47 1E-05 45.1 8.6 35 15-49 2-37 (370)
435 PRK08177 short chain dehydroge 93.2 0.45 9.8E-06 41.1 7.9 33 18-51 2-35 (225)
436 PLN02214 cinnamoyl-CoA reducta 93.2 1.8 4E-05 40.2 12.5 105 15-146 8-126 (342)
437 PF05368 NmrA: NmrA-like famil 93.2 2.1 4.5E-05 37.2 12.2 93 20-144 1-99 (233)
438 PRK11199 tyrA bifunctional cho 93.1 0.38 8.1E-06 45.8 7.9 32 18-50 99-131 (374)
439 PF02737 3HCDH_N: 3-hydroxyacy 93.1 0.12 2.7E-06 43.9 4.1 34 19-53 1-34 (180)
440 PRK06349 homoserine dehydrogen 93.1 0.5 1.1E-05 45.7 8.7 23 17-39 3-25 (426)
441 PRK12779 putative bifunctional 93.1 0.64 1.4E-05 49.5 10.2 34 16-50 305-338 (944)
442 PRK04308 murD UDP-N-acetylmura 93.0 0.6 1.3E-05 45.2 9.4 36 15-51 3-38 (445)
443 PRK02006 murD UDP-N-acetylmura 93.0 0.54 1.2E-05 46.3 9.1 35 15-50 5-39 (498)
444 PRK08642 fabG 3-ketoacyl-(acyl 93.0 0.4 8.7E-06 41.9 7.4 32 15-47 3-35 (253)
445 TIGR01850 argC N-acetyl-gamma- 93.0 0.44 9.5E-06 44.8 8.0 98 18-147 1-100 (346)
446 COG1250 FadB 3-hydroxyacyl-CoA 93.0 0.31 6.8E-06 45.0 6.8 32 18-50 4-35 (307)
447 PRK15059 tartronate semialdehy 93.0 0.7 1.5E-05 42.3 9.2 116 19-149 2-121 (292)
448 PRK06035 3-hydroxyacyl-CoA deh 93.0 0.15 3.2E-06 46.6 4.8 33 18-51 4-36 (291)
449 PRK06482 short chain dehydroge 93.0 0.68 1.5E-05 41.3 9.0 82 17-122 2-84 (276)
450 PRK06123 short chain dehydroge 93.0 0.61 1.3E-05 40.6 8.6 87 17-123 2-89 (248)
451 PRK00676 hemA glutamyl-tRNA re 93.0 0.13 2.8E-06 48.1 4.4 34 14-47 171-204 (338)
452 PRK06046 alanine dehydrogenase 93.0 0.67 1.5E-05 43.1 9.2 76 16-125 128-204 (326)
453 PLN02657 3,8-divinyl protochlo 92.9 1.2 2.5E-05 42.5 11.0 108 16-145 59-180 (390)
454 PRK08125 bifunctional UDP-gluc 92.9 1.3 2.8E-05 45.3 11.9 37 13-49 311-348 (660)
455 TIGR03315 Se_ygfK putative sel 92.9 0.65 1.4E-05 49.6 9.9 34 17-51 537-570 (1012)
456 PLN02712 arogenate dehydrogena 92.9 0.61 1.3E-05 47.8 9.5 33 17-50 52-84 (667)
457 PRK11064 wecC UDP-N-acetyl-D-m 92.9 0.51 1.1E-05 45.5 8.6 41 18-59 4-44 (415)
458 TIGR01373 soxB sarcosine oxida 92.9 0.19 4.1E-06 47.8 5.6 38 17-54 30-68 (407)
459 PRK09310 aroDE bifunctional 3- 92.9 0.1 2.2E-06 51.2 3.8 35 14-49 329-363 (477)
460 PRK11790 D-3-phosphoglycerate 92.9 0.35 7.6E-06 46.6 7.4 88 14-146 148-239 (409)
461 PRK12809 putative oxidoreducta 92.9 0.85 1.8E-05 46.5 10.5 35 16-51 309-343 (639)
462 PF03447 NAD_binding_3: Homose 92.9 0.56 1.2E-05 36.5 7.3 85 24-146 1-90 (117)
463 TIGR01505 tartro_sem_red 2-hyd 92.8 0.6 1.3E-05 42.5 8.6 117 19-149 1-121 (291)
464 PLN02520 bifunctional 3-dehydr 92.8 0.13 2.9E-06 51.1 4.5 34 15-49 377-410 (529)
465 PLN02712 arogenate dehydrogena 92.8 0.88 1.9E-05 46.6 10.5 36 14-50 366-401 (667)
466 PRK07424 bifunctional sterol d 92.8 0.71 1.5E-05 44.4 9.3 35 14-49 175-210 (406)
467 cd05297 GH4_alpha_glucosidase_ 92.8 0.39 8.4E-06 46.5 7.5 33 19-51 2-39 (423)
468 PF01266 DAO: FAD dependent ox 92.8 0.17 3.8E-06 46.2 5.0 35 19-54 1-35 (358)
469 PRK10309 galactitol-1-phosphat 92.8 1.2 2.6E-05 41.3 10.6 34 16-49 160-193 (347)
470 PLN02477 glutamate dehydrogena 92.8 0.1 2.2E-06 50.2 3.4 37 14-50 203-239 (410)
471 PRK12409 D-amino acid dehydrog 92.8 0.16 3.4E-06 48.4 4.8 33 18-51 2-34 (410)
472 PRK10217 dTDP-glucose 4,6-dehy 92.8 0.74 1.6E-05 42.7 9.3 80 18-122 2-82 (355)
473 PLN02695 GDP-D-mannose-3',5'-e 92.8 1.2 2.7E-05 42.0 10.8 33 16-49 20-53 (370)
474 COG0686 Ald Alanine dehydrogen 92.8 0.26 5.5E-06 45.5 5.8 73 15-123 166-240 (371)
475 TIGR01472 gmd GDP-mannose 4,6- 92.7 1.9 4.1E-05 39.9 11.9 31 18-49 1-32 (343)
476 PRK06249 2-dehydropantoate 2-r 92.7 0.16 3.5E-06 46.9 4.7 34 17-51 5-38 (313)
477 PRK15438 erythronate-4-phospha 92.7 0.14 3.1E-06 48.7 4.3 35 14-49 113-147 (378)
478 cd08237 ribitol-5-phosphate_DH 92.7 0.47 1E-05 44.1 7.8 34 17-50 164-198 (341)
479 PRK10084 dTDP-glucose 4,6 dehy 92.7 0.88 1.9E-05 42.2 9.6 80 19-123 2-82 (352)
480 PRK10792 bifunctional 5,10-met 92.7 0.22 4.8E-06 45.5 5.4 35 14-49 156-191 (285)
481 PRK02472 murD UDP-N-acetylmura 92.7 0.36 7.8E-06 46.6 7.2 35 15-50 3-37 (447)
482 PRK06523 short chain dehydroge 92.7 0.43 9.4E-06 42.1 7.2 37 14-51 6-43 (260)
483 COG0673 MviM Predicted dehydro 92.7 0.38 8.3E-06 44.4 7.1 90 16-142 2-94 (342)
484 cd02201 FtsZ_type1 FtsZ is a G 92.6 0.5 1.1E-05 43.6 7.8 39 19-57 2-42 (304)
485 PRK13301 putative L-aspartate 92.6 0.9 1.9E-05 41.1 9.1 115 17-147 2-123 (267)
486 PRK05479 ketol-acid reductoiso 92.6 0.16 3.6E-06 47.4 4.5 35 13-48 13-47 (330)
487 PRK07530 3-hydroxybutyryl-CoA 92.6 0.19 4E-06 45.9 4.8 33 17-50 4-36 (292)
488 cd05313 NAD_bind_2_Glu_DH NAD( 92.6 0.12 2.7E-06 46.4 3.5 36 14-49 35-70 (254)
489 PLN02662 cinnamyl-alcohol dehy 92.5 0.81 1.8E-05 41.7 9.1 33 17-50 4-37 (322)
490 PRK09134 short chain dehydroge 92.5 0.9 2E-05 40.0 9.1 88 16-123 8-96 (258)
491 PRK11259 solA N-methyltryptoph 92.5 0.16 3.4E-06 47.5 4.4 35 17-52 3-37 (376)
492 PRK05808 3-hydroxybutyryl-CoA 92.5 0.18 3.9E-06 45.7 4.6 33 18-51 4-36 (282)
493 PLN00106 malate dehydrogenase 92.5 0.2 4.4E-06 46.6 5.0 36 16-51 17-54 (323)
494 COG2085 Predicted dinucleotide 92.5 1.3 2.9E-05 38.6 9.6 92 18-147 2-94 (211)
495 KOG1208|consensus 92.5 1.1 2.3E-05 41.7 9.7 90 14-122 32-122 (314)
496 PRK00257 erythronate-4-phospha 92.5 0.16 3.4E-06 48.5 4.3 35 14-49 113-147 (381)
497 PRK14179 bifunctional 5,10-met 92.5 0.16 3.4E-06 46.5 4.1 33 14-47 155-188 (284)
498 TIGR02818 adh_III_F_hyde S-(hy 92.4 1.6 3.4E-05 41.0 11.1 33 17-49 186-218 (368)
499 TIGR01692 HIBADH 3-hydroxyisob 92.4 0.46 9.9E-06 43.3 7.2 114 22-149 1-118 (288)
500 PLN00112 malate dehydrogenase 92.4 0.41 9E-06 46.5 7.2 75 18-124 101-186 (444)
No 1
>KOG2336|consensus
Probab=100.00 E-value=7.4e-66 Score=450.25 Aligned_cols=288 Identities=69% Similarity=1.129 Sum_probs=268.9
Q ss_pred CccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH
Q psy2302 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 1 ~~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~ 80 (292)
|+|++||+++.++||+.+.|+|||.||+||.+|.+|.|+|+|++.|+|+|+||+.|+||.||+++..|.+|++++.+.|.
T Consensus 66 MALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLFf~P~QaGlsKv~AA~~TL~ 145 (422)
T KOG2336|consen 66 MALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPDQAGLSKVDAAVQTLA 145 (422)
T ss_pred HHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccccCcccccchHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHH---HHhcCCCCC-CCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEE
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGA---LAVQGSLTE-GPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHI 156 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~---~i~~~~~~~-~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v 156 (292)
.+||+|.++.|+..|+..++|+. .|.++...- .+.|+|+.|+||+++|..+|.+|.+.+..|+.+|+++++++||+
T Consensus 146 ~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHI 225 (422)
T KOG2336|consen 146 EINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHI 225 (422)
T ss_pred hcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCcccccccee
Confidence 99999999999999999888874 455555433 45999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCCCeeEEEeCCCCCeeeee
Q psy2302 157 QLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236 (292)
Q Consensus 157 ~~~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~~~~~~~d~~~~~~~~~~ 236 (292)
+++.||.|+||.|..|..+++.+++++++++|+|++|+|++++++|+++++.++|||+.+|..+.|++||.+++.|.++.
T Consensus 226 Q~i~PGetACFACaPPlVVAs~IDErTLKReGVCAASLPTTMgvvAG~LVqN~LK~LLNFGeVS~YlGYNal~DFFP~ms 305 (422)
T KOG2336|consen 226 QLIVPGETACFACAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGFLVQNSLKFLLNFGEVSPYLGYNALSDFFPTMS 305 (422)
T ss_pred EEecCCccceecccCceeeecCcchhhhhhcceeeecCcchHHHHHHHHHHHHHHHHhhccccchhhcchhHHhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccchhhhcccCccchhh----hhcCcccccccCCCceeeEEEeec
Q psy2302 237 LKPNPSCDDSYCVQRQKEFNARPVEVKL----EAAKPEAQVVHADNDWGEYHYQVQ 288 (292)
Q Consensus 237 l~~~p~C~~~~C~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 288 (292)
++|||+|.++.|-.+|.||..+-+..++ ..+.-++.|+|.||+|||++++++
T Consensus 306 mkPNPqCdd~~Cl~rQkEy~~kvaa~pk~~~ie~~~i~E~~lHedNEWgIelV~e~ 361 (422)
T KOG2336|consen 306 MKPNPQCDDRNCLERQKEYMLKVAAKPKMEAIEETTIDEEPLHEDNEWGIELVDEE 361 (422)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhcCCchhhhcccccccccccccccccceeeccc
Confidence 9999999999999999999865443333 333345889999999999999965
No 2
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=3.4e-50 Score=358.77 Aligned_cols=224 Identities=30% Similarity=0.551 Sum_probs=202.0
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~ 80 (292)
.|++||. +.|++|+++||+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus 18 ~l~~~g~-~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~ 96 (245)
T PRK05690 18 ILRGFDF-DGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALA 96 (245)
T ss_pred cchhcCH-HHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHH
Confidence 4678999 9999999999999999999999999999999999999999999999999987 5899999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||+++++.++..+++ +++.+++ +++|+||+|+|++++|.++|++|+++++||+.+++.+ +.|++.++.
T Consensus 97 ~lnp~v~i~~~~~~i~~-~~~~~~~-------~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g--~~G~v~~~~ 166 (245)
T PRK05690 97 RINPHIAIETINARLDD-DELAALI-------AGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIR--MEGQVTVFT 166 (245)
T ss_pred HHCCCCEEEEEeccCCH-HHHHHHH-------hcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeecc--CCceEEEEe
Confidence 99999999999999886 6666665 7899999999999999999999999999999988764 789999998
Q ss_pred CCC-CCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302 161 PGE-SACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL 237 (292)
Q Consensus 161 p~~-t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l 237 (292)
|+. ++||+|+++...... ..|... ++++|+++++|+++|+|++|+|+|.+++ ++++.||.++++|+.+++
T Consensus 167 ~~~~~~c~~c~~~~~~~~~---~~~~~~----gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~ 239 (245)
T PRK05690 167 YQDDEPCYRCLSRLFGENA---LTCVEA----GVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKL 239 (245)
T ss_pred cCCCCceeeeccCCCCCCC---CCcccC----CccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEc
Confidence 875 899999998643221 123333 4488999999999999999999998876 799999999999999999
Q ss_pred cCCCCC
Q psy2302 238 KPNPSC 243 (292)
Q Consensus 238 ~~~p~C 243 (292)
.++|+|
T Consensus 240 ~~~~~C 245 (245)
T PRK05690 240 KRDPGC 245 (245)
T ss_pred CCCcCC
Confidence 999998
No 3
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=6.4e-50 Score=355.71 Aligned_cols=227 Identities=28% Similarity=0.522 Sum_probs=200.6
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~ 80 (292)
.|..||. +.|++|+++||+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+| .++|+|++|+++++++|+
T Consensus 10 ~l~~~g~-~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~ 88 (240)
T TIGR02355 10 ILRGFDF-DGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALT 88 (240)
T ss_pred ecccCCH-HHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHH
Confidence 4666788 99999999999999999999999999999999999999999999999999875 679999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||+++++.++.+++. +++.+++ .++|+||+|+|++++|.++|++|+++++||+.+++.+ +.|++.++.
T Consensus 89 ~inp~v~i~~~~~~i~~-~~~~~~~-------~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g--~~G~v~~~~ 158 (240)
T TIGR02355 89 QINPHIAINPINAKLDD-AELAALI-------AEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIR--MEGQVSVFT 158 (240)
T ss_pred HHCCCcEEEEEeccCCH-HHHHHHh-------hcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc--cEeEEEEEe
Confidence 99999999999999886 6676666 7899999999999999999999999999999987764 789887665
Q ss_pred -CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302 161 -PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL 237 (292)
Q Consensus 161 -p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l 237 (292)
++.++||+|+++...... ..+.. .+.++|+++++|+++|+|++|+|+|.+++ ++++.||+.+++|+++++
T Consensus 159 ~~~~~~c~~C~~~~~~~~~---~~~~~----~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~ 231 (240)
T TIGR02355 159 YQDGEPCYRCLSRLFGENA---LSCVE----AGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKL 231 (240)
T ss_pred cCCCCCccccccccCCCCC---CCccc----cCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEec
Confidence 446899999976432211 12222 24589999999999999999999998876 799999999999999999
Q ss_pred cCCCCCCCccc
Q psy2302 238 KPNPSCDDSYC 248 (292)
Q Consensus 238 ~~~p~C~~~~C 248 (292)
.++|+|+ +|
T Consensus 232 ~~~~~C~--~C 240 (240)
T TIGR02355 232 PKNPTCP--VC 240 (240)
T ss_pred cCCccCC--CC
Confidence 9999999 78
No 4
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=6e-50 Score=378.91 Aligned_cols=232 Identities=24% Similarity=0.390 Sum_probs=209.0
Q ss_pred CccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHH
Q psy2302 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITL 79 (292)
Q Consensus 1 ~~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l 79 (292)
+.|++||. +.|++|+++||+|||+||+||+++++|+++|||+|+|+|+|+|+.+||+||+ |+++|+|++|+++++++|
T Consensus 23 ~~l~~~g~-~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 23 LILPEVGL-EGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred echhhcCH-HHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 35778999 9999999999999999999999999999999999999999999999999987 589999999999999999
Q ss_pred HhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEee
Q psy2302 80 QNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLI 159 (292)
Q Consensus 80 ~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~ 159 (292)
+++||+++|+++..+++. ++..+++ .++|+||+|+|++++|.+||++|++.++||+++++.+ +.|++.++
T Consensus 102 ~~~np~v~v~~~~~~~~~-~~~~~~~-------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g--~~g~~~v~ 171 (390)
T PRK07411 102 LEINPYCQVDLYETRLSS-ENALDIL-------APYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFR--FEGQATVF 171 (390)
T ss_pred HHHCCCCeEEEEecccCH-HhHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEcc--CEEEEEEE
Confidence 999999999999999986 5666665 6899999999999999999999999999999998875 89999988
Q ss_pred cCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302 160 IPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL 237 (292)
Q Consensus 160 ~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l 237 (292)
.|+.++||+|+||..+... ....|...|+ ++++++++|+++|+|+||+|+|.+++ ++++.||.++++|+.+++
T Consensus 172 ~~~~~~c~~c~~~~~~~~~-~~~~c~~~gv----lg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~ 246 (390)
T PRK07411 172 NYEGGPNYRDLYPEPPPPG-MVPSCAEGGV----LGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKL 246 (390)
T ss_pred CCCCCCChHHhcCCCCCcc-cCCCCccCCc----CcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEec
Confidence 8888999999998632221 2234555555 89999999999999999999998876 899999999999999999
Q ss_pred cCCCCCCCccccc
Q psy2302 238 KPNPSCDDSYCVQ 250 (292)
Q Consensus 238 ~~~p~C~~~~C~~ 250 (292)
.++|+|+ .|..
T Consensus 247 ~~~~~c~--~i~~ 257 (390)
T PRK07411 247 RPNPERP--VIEK 257 (390)
T ss_pred cCCCCCC--cccc
Confidence 9999999 6654
No 5
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=4.8e-49 Score=368.73 Aligned_cols=227 Identities=23% Similarity=0.355 Sum_probs=205.3
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~ 80 (292)
.|+.||. +.|++|+++||+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus 14 ~l~~~g~-~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~ 92 (355)
T PRK05597 14 MLGEIGQ-QGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAML 92 (355)
T ss_pred chhhcCH-HHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHH
Confidence 4677999 9999999999999999999999999999999999999999999999999987 5899999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||++++++++.+++. ++..+++ .++|+||+|+|++.+|.++|++|+++++|||.+++.+ +.|++.++.
T Consensus 93 ~~np~v~v~~~~~~i~~-~~~~~~~-------~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g--~~g~v~~~~ 162 (355)
T PRK05597 93 ALNPDVKVTVSVRRLTW-SNALDEL-------RDADVILDGSDNFDTRHLASWAAARLGIPHVWASILG--FDAQLSVFH 162 (355)
T ss_pred HHCCCcEEEEEEeecCH-HHHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEec--CeEEEEEEc
Confidence 99999999999999986 6666665 6899999999999999999999999999999998874 899999988
Q ss_pred CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeecc
Q psy2302 161 PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKLK 238 (292)
Q Consensus 161 p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l~ 238 (292)
|+.++||+|+++...... +...|...|+ ++|+++++|+++|+|++|+|+|.+++ ++++.||.++++|+.+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~-~~~~c~~~gv----~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~ 237 (355)
T PRK05597 163 AGHGPIYEDLFPTPPPPG-SVPSCSQAGV----LGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVV 237 (355)
T ss_pred CCCCCCHHHhCCCCCCcc-CCCCccccCc----chhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEecc
Confidence 999999999998642211 2234444444 89999999999999999999998876 7999999999999999999
Q ss_pred CCCCCC
Q psy2302 239 PNPSCD 244 (292)
Q Consensus 239 ~~p~C~ 244 (292)
++|.|.
T Consensus 238 ~~~~~~ 243 (355)
T PRK05597 238 GNPAVL 243 (355)
T ss_pred CCCCCc
Confidence 999995
No 6
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=1e-48 Score=363.72 Aligned_cols=230 Identities=29% Similarity=0.473 Sum_probs=204.9
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCC--ChHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCG--LSKVEAARIT 78 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG--~~Ka~a~~~~ 78 (292)
.++.||. +.|++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.||++||+||+ |+++|+| ++|+++++++
T Consensus 10 ~~~~~G~-~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~ 88 (338)
T PRK12475 10 LFSGIGE-EGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEH 88 (338)
T ss_pred chhhcCH-HHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHH
Confidence 3567999 9999999999999999999999999999999999999999999999999976 6888875 8999999999
Q ss_pred HHhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302 79 LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL 158 (292)
Q Consensus 79 l~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~ 158 (292)
|+++||+++++++..+++. +++++++ .++|+||+|+|++++|.+||++|+++++|||++++.+ +.|++.+
T Consensus 89 l~~inp~v~i~~~~~~~~~-~~~~~~~-------~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g--~~G~~~~ 158 (338)
T PRK12475 89 LRKINSEVEIVPVVTDVTV-EELEELV-------KEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVG--SYGVTYT 158 (338)
T ss_pred HHHHCCCcEEEEEeccCCH-HHHHHHh-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc--cEEEEEE
Confidence 9999999999999988875 6777765 7899999999999999999999999999999998864 7899999
Q ss_pred ecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeee
Q psy2302 159 IIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMK 236 (292)
Q Consensus 159 ~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~ 236 (292)
+.|+.+|||+|+++..+... .+|...| .++|+++++|+++|.|++|+|+|.++. ++++.||.++++|+.++
T Consensus 159 ~~P~~tpC~~Cl~~~~p~~~---~~c~~~G----vl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~ 231 (338)
T PRK12475 159 IIPGKTPCLRCLMEHVPVGG---ATCDTAG----IIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIK 231 (338)
T ss_pred ECCCCCCCHHHhcCCCCCCC---CCCccCC----cCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEE
Confidence 99999999999998643221 2344444 378899999999999999999998765 79999999999999999
Q ss_pred ccC--CCCCCCccccch
Q psy2302 237 LKP--NPSCDDSYCVQR 251 (292)
Q Consensus 237 l~~--~p~C~~~~C~~~ 251 (292)
+.+ +|+|| +||.+
T Consensus 232 ~~~~k~p~Cp--~Cg~~ 246 (338)
T PRK12475 232 VNKQKKDTCP--SCGLT 246 (338)
T ss_pred eccCCCCCCC--cCCCC
Confidence 955 99999 89974
No 7
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=5.2e-48 Score=359.11 Aligned_cols=230 Identities=29% Similarity=0.515 Sum_probs=205.2
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCC--CChHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQC--GLSKVEAARIT 78 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~di--G~~Ka~a~~~~ 78 (292)
.|+.||. ++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+++||+||+ |.++|+ |++|+++++++
T Consensus 10 ~l~~~G~-~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~ 88 (339)
T PRK07688 10 LFSPIGE-EGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKR 88 (339)
T ss_pred chhhcCH-HHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHH
Confidence 4677999 9999999999999999999999999999999999999999999999999986 688999 46999999999
Q ss_pred HHhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302 79 LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL 158 (292)
Q Consensus 79 l~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~ 158 (292)
|+++||+++++.+..+++. +++.+++ .++|+||+|+||+++|.++|++|.++++|||++++.+ +.|++.+
T Consensus 89 l~~inp~v~v~~~~~~~~~-~~~~~~~-------~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g--~~G~~~~ 158 (339)
T PRK07688 89 LEEINSDVRVEAIVQDVTA-EELEELV-------TGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVG--SYGLSYT 158 (339)
T ss_pred HHHHCCCcEEEEEeccCCH-HHHHHHH-------cCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeee--eeeEEEE
Confidence 9999999999999988876 6777766 7899999999999999999999999999999998764 7899888
Q ss_pred ecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeee
Q psy2302 159 IIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMK 236 (292)
Q Consensus 159 ~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~ 236 (292)
+.|+.++||+|+++..+... .+|...|+ ++|+++++|+++|.|++|+|+|.++. ++++.||.++++|+.++
T Consensus 159 ~~p~~~pC~~Cl~~~~~~~~---~~c~~~gv----~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~ 231 (339)
T PRK07688 159 IIPGKTPCLRCLLQSIPLGG---ATCDTAGI----ISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMN 231 (339)
T ss_pred ECCCCCCCeEeecCCCCCCC---CCCccCCc----ccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEE
Confidence 89999999999998653322 23444444 88999999999999999999998765 79999999999999987
Q ss_pred cc--CCCCCCCccccch
Q psy2302 237 LK--PNPSCDDSYCVQR 251 (292)
Q Consensus 237 l~--~~p~C~~~~C~~~ 251 (292)
+. ++|+|| .|+.+
T Consensus 232 ~~~~~~~~Cp--~Cg~~ 246 (339)
T PRK07688 232 VQKLKKDNCP--SCGEK 246 (339)
T ss_pred ecCCCCCCCC--CCCCC
Confidence 64 689999 89974
No 8
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=4.4e-48 Score=366.73 Aligned_cols=227 Identities=24% Similarity=0.405 Sum_probs=203.5
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~ 80 (292)
.|++||. +.|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus 28 ~l~~~g~-~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~ 106 (392)
T PRK07878 28 IIPDVGV-DGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIV 106 (392)
T ss_pred chhhcCH-HHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHH
Confidence 4677999 9999999999999999999999999999999999999999999999999987 5899999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||+++++.+..+++. ++..+++ .++|+||+|+|++.+|.++|++|+++++|||.+++.+ +.|++.++.
T Consensus 107 ~~np~v~i~~~~~~i~~-~~~~~~~-------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g--~~G~v~~~~ 176 (392)
T PRK07878 107 EINPLVNVRLHEFRLDP-SNAVELF-------SQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYR--FEGQASVFW 176 (392)
T ss_pred HhCCCcEEEEEeccCCh-hHHHHHH-------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc--CEEEEEEEe
Confidence 99999999999999886 5666665 6899999999999999999999999999999998874 899998776
Q ss_pred C----CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeee
Q psy2302 161 P----GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPK 234 (292)
Q Consensus 161 p----~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~ 234 (292)
+ +.++||+|+++...... ....|...|+ ++++++++|+++|+|+||+|+|.+++ ++++.||.++++|+.
T Consensus 177 ~~~~~~~~~c~~c~~~~~~~~~-~~~~~~~~gv----~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~ 251 (392)
T PRK07878 177 EDAPDGLGLNYRDLYPEPPPPG-MVPSCAEGGV----LGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRT 251 (392)
T ss_pred cCCCCCCCCeeeeecCCCCCcc-CCCCCccCCc----cchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceee
Confidence 3 47899999997532221 2234555554 89999999999999999999998876 899999999999999
Q ss_pred eeccCCCCCC
Q psy2302 235 MKLKPNPSCD 244 (292)
Q Consensus 235 ~~l~~~p~C~ 244 (292)
++|.++|+|+
T Consensus 252 ~~~~~~~~C~ 261 (392)
T PRK07878 252 IKIRKDPSTP 261 (392)
T ss_pred EeeccCCCCC
Confidence 9999999997
No 9
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=5e-48 Score=362.89 Aligned_cols=232 Identities=26% Similarity=0.416 Sum_probs=208.6
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~ 80 (292)
.|+.||. +.|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus 27 ~l~~~g~-~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~ 105 (370)
T PRK05600 27 ALPGFGI-EQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLK 105 (370)
T ss_pred chhhhCH-HHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHH
Confidence 4677999 9999999999999999999999999999999999999999999999999986 7899999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||+++++.+..+++. +++.+++ .++|+||+|+|++++|.+||++|+++++|||.+++.+ +.|++.++.
T Consensus 106 ~~np~v~i~~~~~~i~~-~~~~~~~-------~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g--~~G~v~v~~ 175 (370)
T PRK05600 106 EIQPDIRVNALRERLTA-ENAVELL-------NGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLR--FHGELAVFN 175 (370)
T ss_pred HHCCCCeeEEeeeecCH-HHHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEec--CEEEEEEEe
Confidence 99999999999999985 6777776 6899999999999999999999999999999998874 899999887
Q ss_pred CC---CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeee
Q psy2302 161 PG---ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKM 235 (292)
Q Consensus 161 p~---~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~ 235 (292)
|+ .++||+|+||..+..+ ....|...|+ ++++.+++|+++|+|++|+|+|.+++ ++++.||.++++|+.+
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~-~~~~c~~~gv----lg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~ 250 (370)
T PRK05600 176 SGPDHRGVGLRDLFPEQPSGD-SIPDCATAGV----LGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSF 250 (370)
T ss_pred cCCCCCCCCcHhhCCCCCccc-cCCCCccCCc----chhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEE
Confidence 76 3789999998643221 2233444444 89999999999999999999999776 7999999999999999
Q ss_pred eccCCCCCCCccccch
Q psy2302 236 KLKPNPSCDDSYCVQR 251 (292)
Q Consensus 236 ~l~~~p~C~~~~C~~~ 251 (292)
++.++|+|+ .|...
T Consensus 251 ~~~~~~~c~--~~~~~ 264 (370)
T PRK05600 251 RVGADPARP--LVTRL 264 (370)
T ss_pred EecCCCCCC--ccccc
Confidence 999999999 78865
No 10
>KOG2017|consensus
Probab=100.00 E-value=4.2e-49 Score=353.54 Aligned_cols=234 Identities=25% Similarity=0.472 Sum_probs=214.7
Q ss_pred CccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHH
Q psy2302 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITL 79 (292)
Q Consensus 1 ~~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l 79 (292)
|+|+++|+ .+|.+|++++|+||||||+||..+++|+.+|||+|.|||+|.||.+||+||. +++.++|+.|+++|+..+
T Consensus 51 lilpe~gV-~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~l 129 (427)
T KOG2017|consen 51 LILPEFGV-HGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFL 129 (427)
T ss_pred eecccccc-ccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 68999998 9999999999999999999999999999999999999999999999999986 789999999999999999
Q ss_pred HhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEee
Q psy2302 80 QNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLI 159 (292)
Q Consensus 80 ~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~ 159 (292)
+++||+++++.|+..++. +|..+++ ++||+|+|||||+.+|++|++.|+..|+|++.++.. .|.||..++
T Consensus 130 r~lNs~v~v~~y~~~L~~-sNa~~Ii-------~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaL--r~EGQLtvY 199 (427)
T KOG2017|consen 130 RRLNSHVEVQTYNEFLSS-SNAFDII-------KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSAL--RWEGQLTVY 199 (427)
T ss_pred HhcCCCceeeechhhccc-hhHHHHh-------hccceEEEcCCCccchhhhhhHHHHcCCcccccccc--cccceeEEe
Confidence 999999999999999987 7888877 799999999999999999999999999999998776 489999988
Q ss_pred cCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302 160 IPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL 237 (292)
Q Consensus 160 ~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l 237 (292)
....+|||+|+||..++++ ..-+|...|+ +++..+++++|+|.|++|++++.+++ ++++.||.++..|+++++
T Consensus 200 ny~~GPCYRClFP~Ppp~~-~vt~C~dgGV----lGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~irl 274 (427)
T KOG2017|consen 200 NYNNGPCYRCLFPNPPPPE-AVTNCADGGV----LGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIRL 274 (427)
T ss_pred ecCCCceeeecCCCCcChH-HhcccccCce----eecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEEe
Confidence 8888999999999765433 2345666666 88999999999999999999999876 799999999999999999
Q ss_pred -cCCCCCCCccccchh
Q psy2302 238 -KPNPSCDDSYCVQRQ 252 (292)
Q Consensus 238 -~~~p~C~~~~C~~~~ 252 (292)
.|.++|. +||+..
T Consensus 275 R~r~~~C~--~Cg~n~ 288 (427)
T KOG2017|consen 275 RSRRPKCA--VCGKNP 288 (427)
T ss_pred ccCCCCCc--ccCCCC
Confidence 4599999 899754
No 11
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=1.7e-47 Score=344.62 Aligned_cols=223 Identities=25% Similarity=0.350 Sum_probs=198.4
Q ss_pred cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhC
Q psy2302 5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNIN 83 (292)
Q Consensus 5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~n 83 (292)
.+|. +.|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|++|||+||+ |+.+|+|++|+++++++|+++|
T Consensus 16 ~iG~-e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN 94 (287)
T PRK08223 16 WITP-TEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN 94 (287)
T ss_pred hcCH-HHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC
Confidence 3788 9999999999999999999999999999999999999999999999999987 6899999999999999999999
Q ss_pred CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302 84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP 161 (292)
Q Consensus 84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p 161 (292)
|+++|++++..++. ++..+++ +++|+||||+|++ ++|.++|++|+++++|||.+++.+ +.|++.++.|
T Consensus 95 P~v~V~~~~~~l~~-~n~~~ll-------~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g--~~gqv~v~~p 164 (287)
T PRK08223 95 PELEIRAFPEGIGK-ENADAFL-------DGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG--MGTALLVFDP 164 (287)
T ss_pred CCCEEEEEecccCc-cCHHHHH-------hCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC--CeEEEEEEcC
Confidence 99999999999986 7887776 7899999999986 899999999999999999998864 8999999988
Q ss_pred CCCCccCCCCCC---ccCCC-------cchhhhhhcCcc------------CCCCchHHHHHHHHHHHHHHHHHhCCCCC
Q psy2302 162 GESACFACAPPL---IVASS-------IDEKTLKKDGVC------------AASLPTTMGIVAGFLVQNALKKLLKFGEV 219 (292)
Q Consensus 162 ~~t~C~~C~~~~---~~~~~-------~~~~~~~~~~~~------------~~s~~~~~~ivasl~a~e~lk~l~g~~~~ 219 (292)
+ ++||+|+||. .++.. ...++|...|+. .|+.+++.+++|+++|.|++|+|+|.+++
T Consensus 165 ~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~ 243 (287)
T PRK08223 165 G-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGRGRV 243 (287)
T ss_pred C-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCCCCc
Confidence 5 7999999986 22210 123466667765 46668999999999999999999998886
Q ss_pred ---CeeEEEeCCCCCeeeeeccC
Q psy2302 220 ---SWYLGYSALTDFFPKMKLKP 239 (292)
Q Consensus 220 ---~~~~~~d~~~~~~~~~~l~~ 239 (292)
++++.||.++++|++..++.
T Consensus 244 ~~~~~~~~~d~~~~~~~~~~~~~ 266 (287)
T PRK08223 244 YAAPWFHQFDAYRSRYVRTWRPG 266 (287)
T ss_pred CCCCeEEEEEcCCceEEEEEecC
Confidence 58999999999999887753
No 12
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.3e-47 Score=359.42 Aligned_cols=232 Identities=30% Similarity=0.513 Sum_probs=207.3
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~ 80 (292)
.|+.||. +.|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus 121 ~l~~~g~-~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~ 199 (376)
T PRK08762 121 RLPEVGE-EGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLA 199 (376)
T ss_pred chhhcCH-HHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHH
Confidence 3567999 9999999999999999999999999999999999999999999999999987 5899999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||+++++.+...++. +++.+++ .++|+||+|+|++++|.++|++|+++++|||++++.+ +.|++.++.
T Consensus 200 ~~np~v~v~~~~~~~~~-~~~~~~~-------~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g--~~g~v~~~~ 269 (376)
T PRK08762 200 ALNPDVQVEAVQERVTS-DNVEALL-------QDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFR--FEGQVSVFD 269 (376)
T ss_pred HHCCCCEEEEEeccCCh-HHHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc--CEEEEEEEe
Confidence 99999999999988876 6676666 6899999999999999999999999999999998874 799999998
Q ss_pred CCC----CCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeee
Q psy2302 161 PGE----SACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPK 234 (292)
Q Consensus 161 p~~----t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~ 234 (292)
|+. ++||+|+++...... ....|...|+ ++++++++|+|+|+|++|+|+|.+.+ ++++.||.++++|+.
T Consensus 270 p~~~~~~~~c~~c~~~~~~~~~-~~~~~~~~gv----~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~ 344 (376)
T PRK08762 270 AGRQRGQAPCYRCLFPEPPPPE-LAPSCAEAGV----LGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRE 344 (376)
T ss_pred CCCCCCCCCCHhhcCCCCCCcc-cCCCCccCCc----chhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEE
Confidence 876 899999997532211 1223444444 88999999999999999999998776 799999999999999
Q ss_pred eeccCCCCCCCccccch
Q psy2302 235 MKLKPNPSCDDSYCVQR 251 (292)
Q Consensus 235 ~~l~~~p~C~~~~C~~~ 251 (292)
+++.++|+|+ +|+.+
T Consensus 345 ~~~~~~~~C~--~C~~~ 359 (376)
T PRK08762 345 LRLPPDPHCP--VCAPG 359 (376)
T ss_pred EeccCCCCCC--CCCCC
Confidence 9999999999 89874
No 13
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=8.3e-47 Score=333.95 Aligned_cols=219 Identities=37% Similarity=0.567 Sum_probs=195.1
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~ 80 (292)
.+++||. +.|++|+++||+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||+ |.++|+|++|+++++++|+
T Consensus 7 ~l~~~g~-~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~ 85 (228)
T cd00757 7 LLPEIGE-EGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLR 85 (228)
T ss_pred chhhcCH-HHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHH
Confidence 3567999 9999999999999999999999999999999999999999999999999987 5778999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||+++++.++.+++. +++.+++ .++|+||+|+|++.+|.++|++|+++++|||++++.+ +.|++.++.
T Consensus 86 ~~np~~~i~~~~~~i~~-~~~~~~~-------~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g--~~g~v~~~~ 155 (228)
T cd00757 86 AINPDVEIEAYNERLDA-ENAEELI-------AGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLG--FEGQVTVFI 155 (228)
T ss_pred HhCCCCEEEEecceeCH-HHHHHHH-------hCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc--CEEEEEEEC
Confidence 99999999999998865 6776665 6799999999999999999999999999999998874 799999999
Q ss_pred CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302 161 PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL 237 (292)
Q Consensus 161 p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l 237 (292)
|+.++||.|.++.....+ .....+.++++|.++++|+|+|+|++|+|+|.+++ ++++.||.+++.|+++++
T Consensus 156 p~~~~c~~c~~~~~~~~~------~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 228 (228)
T cd00757 156 PGEGPCYRCLFPEPPPPG------VPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228 (228)
T ss_pred CCCCCCccccCCCCCCCC------CCccccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence 999999999987643211 11112356799999999999999999999998765 899999999999998764
No 14
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=325.58 Aligned_cols=212 Identities=26% Similarity=0.441 Sum_probs=191.1
Q ss_pred cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCC-hHHHHHHHHHHhh
Q psy2302 5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGL-SKVEAARITLQNI 82 (292)
Q Consensus 5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~-~Ka~a~~~~l~~~ 82 (292)
.||. +.|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||+ |.++|+|+ +|+++++++|+++
T Consensus 16 ~~g~-~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~ 94 (231)
T PRK08328 16 IFGV-EGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF 94 (231)
T ss_pred hcCH-HHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh
Confidence 3899 9999999999999999999999999999999999999999999999999987 57899999 6999999999999
Q ss_pred CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCC
Q psy2302 83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPG 162 (292)
Q Consensus 83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~ 162 (292)
||+++++.+...++. +++.+++ +++|+||+|+|++.+|.+++++|+++++|+|++++.+ +.|++.++.|+
T Consensus 95 np~v~v~~~~~~~~~-~~~~~~l-------~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g--~~G~v~~~~p~ 164 (231)
T PRK08328 95 NSDIKIETFVGRLSE-ENIDEVL-------KGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEG--TYGQVTTIVPG 164 (231)
T ss_pred CCCCEEEEEeccCCH-HHHHHHH-------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeecc--CEEEEEEECCC
Confidence 999999999988875 6776665 6899999999999999999999999999999999874 89999999999
Q ss_pred CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302 163 ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL 237 (292)
Q Consensus 163 ~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l 237 (292)
.++||+|+++.... .... .+.++|+++++|+++|+|++|+|+|.+++ ++++.+|.+++.|+.+++
T Consensus 165 ~~~c~~~~~~~~~~------~~~~----~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~ 231 (231)
T PRK08328 165 KTKRLREIFPKVKK------KKGK----FPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231 (231)
T ss_pred CCCCHHHhCCCCCC------cccc----CCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence 99999999975321 0111 24589999999999999999999998876 799999999999988764
No 15
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=4e-44 Score=311.20 Aligned_cols=194 Identities=31% Similarity=0.562 Sum_probs=173.4
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~ 80 (292)
.|+.||. +.|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus 7 ~l~~~g~-~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~ 85 (202)
T TIGR02356 7 LLPDIGE-EGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLR 85 (202)
T ss_pred cchhcCH-HHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHH
Confidence 4677999 9999999999999999999999999999999999999999999999999986 7999999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||+++++.++..+++ +++.+++ .++|+||+|+|++++|.++|++|+++++|||.+++.+ +.|++.++.
T Consensus 86 ~~np~v~i~~~~~~i~~-~~~~~~~-------~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g--~~G~~~~~~ 155 (202)
T TIGR02356 86 ELNSDIQVTALKERVTA-ENLELLI-------NNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVG--FGGQLMVFD 155 (202)
T ss_pred HhCCCCEEEEehhcCCH-HHHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc--CeEEEEEEe
Confidence 99999999999998876 6666665 6899999999999999999999999999999998864 799999999
Q ss_pred CC-CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHH
Q psy2302 161 PG-ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKL 213 (292)
Q Consensus 161 p~-~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l 213 (292)
|+ .++||+|+++... . ..+.+... +.++|+++++|+|+|+|++|+|
T Consensus 156 p~~~~~c~~c~~~~~~--~-~~~~~~~~----~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 156 PGGEGPCLRCLFPDIA--D-TGPSCATA----GVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred CCCCCCChhhcCCCCc--c-cCCCCccC----CccchHHHHHHHHHHHHHHHhC
Confidence 98 7999999998621 1 11223333 3489999999999999999985
No 16
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=1.7e-42 Score=319.33 Aligned_cols=220 Identities=14% Similarity=0.203 Sum_probs=188.6
Q ss_pred cccc-CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKR-MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~-~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~ 80 (292)
.|+. +|..+.|++|++++|+ +||+|+.++.+|++ |||+|+|+|+|.|+.|||+ .+|+++|+|++|+++++++|.
T Consensus 60 ~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~-~L~~~~diG~~K~~~a~~~L~ 134 (318)
T TIGR03603 60 TLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI-DLYSKEFILKKDIRDLTSNLD 134 (318)
T ss_pred cCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH-HHhChhhcCcHHHHHHHHHHH
Confidence 4555 5764689999999999 99999999999999 9999999999999999999 779999999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHH--HHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMT--INMACNQLGQTWFESGVSENAVSGHIQL 158 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~--in~~~~~~~~p~i~~~~~~~~~~G~v~~ 158 (292)
++||+++++.. .+++ .++|+||||+|++.+|.+ +|++|.++++|||.+++.+ +.|++..
T Consensus 135 ~lnp~v~i~~~----------~~li-------~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g--~~Gqv~~ 195 (318)
T TIGR03603 135 ALELTKNVDEL----------KDLL-------KDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDG--PFVFITC 195 (318)
T ss_pred HhCCCCEEeeH----------HHHh-------CCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEcc--CEEEEEE
Confidence 99999998642 2333 789999999999999965 9999999999999998874 8999887
Q ss_pred ecCCCCCccCCCCCCccCCC-------------cchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC---Cee
Q psy2302 159 IIPGESACFACAPPLIVASS-------------IDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV---SWY 222 (292)
Q Consensus 159 ~~p~~t~C~~C~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~---~~~ 222 (292)
+.|+.||||+|+++...... .....+.. ++.++|+++++|+|+|.||+ ++++.+.+ +++
T Consensus 196 ~~P~~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~l 270 (318)
T TIGR03603 196 TLPPETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVST----AELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRL 270 (318)
T ss_pred EeCCCCCcHHHccchhhcccccccccccccccCCCCCCCcc----CCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeE
Confidence 77999999999987321110 00111222 23488999999999999999 99998774 799
Q ss_pred EEEeCCCCCeeeeeccCCCCCCCccccchh
Q psy2302 223 LGYSALTDFFPKMKLKPNPSCDDSYCVQRQ 252 (292)
Q Consensus 223 ~~~d~~~~~~~~~~l~~~p~C~~~~C~~~~ 252 (292)
+.||..++.++.+++.++|+|| .||...
T Consensus 271 l~id~~t~~~~~~~l~k~p~Cp--~CG~~~ 298 (318)
T TIGR03603 271 LSINLPTLEIQFQDILKQSCCS--TCGTFN 298 (318)
T ss_pred EEEECCCCeEEEEecCCCCCCc--ccCCcc
Confidence 9999999999999999999999 898764
No 17
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-41 Score=304.47 Aligned_cols=231 Identities=34% Similarity=0.584 Sum_probs=206.7
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ 80 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~ 80 (292)
.|..+|. ++|++|+++||+|+|+||+|++++++|+++|||+++|+|+|+|+.+||+||+ |+.+|+|++|+++++++++
T Consensus 16 ~l~~~~~-~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~ 94 (254)
T COG0476 16 LLPGIGG-EGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALR 94 (254)
T ss_pred eecccCH-HHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHH
Confidence 4556777 5699999999999999999999999999999999999999999999999976 7999999999999999999
Q ss_pred hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
++||.++++++...++. +++.+++ ..+|+|++++||+.+|..+|++|+++++||++++..+ +.|++.++.
T Consensus 95 ~ln~~v~v~~~~~~l~~-~~~~~~~-------~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~--~~g~~~~~~ 164 (254)
T COG0476 95 KLNPLVEVVAYLERLDE-ENAEELI-------AQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIG--FEGQVTVII 164 (254)
T ss_pred HhCCCCeEEEeecccCh-hhHHHHh-------ccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeecc--ceEEEEEEe
Confidence 99999999999999886 6666665 7999999999999999999999999999999998874 899999999
Q ss_pred CC-CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCC-CC--CeeEEEeCCCC-Ceeee
Q psy2302 161 PG-ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFG-EV--SWYLGYSALTD-FFPKM 235 (292)
Q Consensus 161 p~-~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~-~~--~~~~~~d~~~~-~~~~~ 235 (292)
|+ .++||+|+++..+........|...++ +.+..+.++++++.|++|++++.+ .+ ++.+.||.+.+ .|+++
T Consensus 165 ~~~~~~c~~~~~~~~~~~~~~~~~c~~~gv----~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 240 (254)
T COG0476 165 PGDKTPCYRCLFPEKPPPGLVPTSCDEAGV----LGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTL 240 (254)
T ss_pred cCCCCCcccccCCCCCCccccccccccCCc----cccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhh
Confidence 99 599999999876553322223666666 778889999999999999999997 43 79999999998 89999
Q ss_pred eccCCCC-CCCcccc
Q psy2302 236 KLKPNPS-CDDSYCV 249 (292)
Q Consensus 236 ~l~~~p~-C~~~~C~ 249 (292)
.+.+++. |+ +|+
T Consensus 241 ~~~~~~~~~~--~c~ 253 (254)
T COG0476 241 KLRRRPISCP--VCG 253 (254)
T ss_pred hcccCCCCCC--cCC
Confidence 9999888 99 897
No 18
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=3e-40 Score=299.37 Aligned_cols=218 Identities=25% Similarity=0.421 Sum_probs=182.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
||+|+|+||+||+++++|+++|||+|+|+|+|+|+.+||+||| |+.+|+|++|+++++++|+++||+++++++..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 6999999999999999999999999999999999999999987 699999999999999999999999999999988875
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh--------CCceeecCcccceeEEEEEeecCCCCCccCC
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL--------GQTWFESGVSENAVSGHIQLIIPGESACFAC 169 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~--------~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~C 169 (292)
.+ .+++ +++|+||+|+|+.++|.+||+.|.+. ++|+|++|+.| +.|++.++.|+.|+||+|
T Consensus 81 -~~-~~f~-------~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G--~~G~v~vi~P~~t~C~~C 149 (291)
T cd01488 81 -KD-EEFY-------RQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG--FKGHARVILPGITACIEC 149 (291)
T ss_pred -hh-HHHh-------cCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcc--cEEEEEEEcCCCCCcccc
Confidence 22 2333 78999999999999999999998765 49999999875 899999999999999999
Q ss_pred CCCCccC-----------------C-------------------Cc-chhhh--------hh--------------cCc-
Q psy2302 170 APPLIVA-----------------S-------------------SI-DEKTL--------KK--------------DGV- 189 (292)
Q Consensus 170 ~~~~~~~-----------------~-------------------~~-~~~~~--------~~--------------~~~- 189 (292)
.+...+. . +. ++... .+ .|+
T Consensus 150 ~~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~ 229 (291)
T cd01488 150 SLDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVV 229 (291)
T ss_pred CCCCCCCCCCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhH
Confidence 8531100 0 00 01100 01 111
Q ss_pred --cCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCC-eeeeeccCCCCCCCcccc
Q psy2302 190 --CAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDF-FPKMKLKPNPSCDDSYCV 249 (292)
Q Consensus 190 --~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~-~~~~~l~~~p~C~~~~C~ 249 (292)
.-|+++++++++|++++.|++|++++..+. .+++.|+...+- ..++++.|+|+|+ +|+
T Consensus 230 ~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~~~~~~c~--~c~ 291 (291)
T cd01488 230 KRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEHERKEDCP--VCS 291 (291)
T ss_pred heeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEEeeCCCCC--CCC
Confidence 137788999999999999999999986654 688899988765 4688999999999 896
No 19
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=3.9e-39 Score=278.73 Aligned_cols=184 Identities=23% Similarity=0.415 Sum_probs=164.5
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN 81 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~ 81 (292)
++.||. +.|++|+++||+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||| |+.+|+|++|+++++++|++
T Consensus 8 i~l~G~-e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~ 86 (197)
T cd01492 8 IRLWGL-EAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRA 86 (197)
T ss_pred HHHhCH-HHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHH
Confidence 456999 9999999999999999999999999999999999999999999999999976 68999999999999999999
Q ss_pred hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302 82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP 161 (292)
Q Consensus 82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p 161 (292)
+||+++++.+...+++ +..+++ .++|+||+|+|++.++.++|++|+++++||+.+++.+ +.|++....
T Consensus 87 lNp~v~i~~~~~~~~~--~~~~~~-------~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G--~~G~v~~d~- 154 (197)
T cd01492 87 LNPRVKVSVDTDDISE--KPEEFF-------SQFDVVVATELSRAELVKINELCRKLGVKFYATGVHG--LFGFVFADL- 154 (197)
T ss_pred HCCCCEEEEEecCccc--cHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecC--CEEEEEEec-
Confidence 9999999999887763 333444 7899999999999999999999999999999998865 688765311
Q ss_pred CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCC
Q psy2302 162 GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDF 231 (292)
Q Consensus 162 ~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~ 231 (292)
++|+++++|+++|+|++|+|++.+++ ++++.||..+..
T Consensus 155 --------------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~~ 193 (197)
T cd01492 155 --------------------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETSE 193 (197)
T ss_pred --------------------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCCc
Confidence 56788999999999999999998877 678889988764
No 20
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.4e-38 Score=275.46 Aligned_cols=183 Identities=18% Similarity=0.313 Sum_probs=162.7
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCc--CCCCChHHHHHHHHH
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQP--DQCGLSKVEAARITL 79 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~--~diG~~Ka~a~~~~l 79 (292)
++.||. +.|++|+++||+|+|+||+|++++++|+++||++|+|+|+|.|+++|++||+ |++ +|+|++|+++++++|
T Consensus 6 i~l~G~-~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L 84 (198)
T cd01485 6 IRLWGD-EAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFL 84 (198)
T ss_pred eeccCH-HHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHH
Confidence 445999 9999999999999999999999999999999999999999999999999986 577 899999999999999
Q ss_pred HhhCCCCeEEEEeccccc-hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302 80 QNINPDVTIEVHNFNITL-LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL 158 (292)
Q Consensus 80 ~~~np~v~v~~~~~~i~~-~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~ 158 (292)
+++||+++++.+...+++ .++..+++ .++|+||+|.|+..++.++|++|+++++|++.+++.+ +.|++.+
T Consensus 85 ~~lNp~v~i~~~~~~~~~~~~~~~~~~-------~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G--~~G~v~~ 155 (198)
T cd01485 85 QELNPNVKLSIVEEDSLSNDSNIEEYL-------QKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYG--LIGYAFF 155 (198)
T ss_pred HHHCCCCEEEEEecccccchhhHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeec--CEEEEEE
Confidence 999999999999877752 23444544 6899999999999999999999999999999998864 7887653
Q ss_pred ecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCC
Q psy2302 159 IIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTD 230 (292)
Q Consensus 159 ~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~ 230 (292)
.. |+++++|+++|+|++|+|+|.+++ ++++.||.+.+
T Consensus 156 ~~-----------------------------------p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~ 193 (198)
T cd01485 156 DF-----------------------------------PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFES 193 (198)
T ss_pred ch-----------------------------------hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccc
Confidence 21 567899999999999999999877 78888998876
No 21
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=4.6e-38 Score=274.84 Aligned_cols=194 Identities=27% Similarity=0.307 Sum_probs=161.9
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI 82 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~ 82 (292)
++++|. +.|++|++++|+|+|+||+|+.++++|+++||++|+|+|+|.|+.+||+||+|..+|+|++|+++++++|+++
T Consensus 15 ~~~~g~-~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l 93 (212)
T PRK08644 15 ASRHTP-KLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI 93 (212)
T ss_pred HhhcCH-HHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH
Confidence 567999 9999999999999999999999999999999999999999999999999998778999999999999999999
Q ss_pred CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCceeecCcccceeEEEEEeecC
Q psy2302 83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTWFESGVSENAVSGHIQLIIP 161 (292)
Q Consensus 83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~i~~~~~~~~~~G~v~~~~p 161 (292)
||+++++.++..+++ +++.+++ +++|+||+|+|++.+|..+++.|.++ ++|+|.++..+ ..|+...+.|
T Consensus 94 np~v~v~~~~~~i~~-~~~~~~~-------~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~--~~~~~~~~~~ 163 (212)
T PRK08644 94 NPFVEIEAHNEKIDE-DNIEELF-------KDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMA--GYGDSNSIKT 163 (212)
T ss_pred CCCCEEEEEeeecCH-HHHHHHH-------cCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhh--ccCCceEEEe
Confidence 999999999999886 6666665 78999999999999999999999999 99999874432 3455454555
Q ss_pred CCCCccCCCC--CCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCC
Q psy2302 162 GESACFACAP--PLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGE 218 (292)
Q Consensus 162 ~~t~C~~C~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~ 218 (292)
.. |+.|.+ +... . ..+... +.++|+++++|+|+|+|++|+|+|.+.
T Consensus 164 ~~--~~~~~~~~~~~~----~-~~~~~~----gv~~~~~~~i~~~~a~ealk~l~~~~~ 211 (212)
T PRK08644 164 RR--IGKNFYIVGDFV----T-EAKPGN----PLMAPRVNIAAAHQANLVLRLILGEEV 211 (212)
T ss_pred cC--CCCCeeECCCCC----c-ccCCCC----CccchHHHHHHHHHHHHHHHHHhCCCC
Confidence 33 333332 2111 1 112222 448999999999999999999998653
No 22
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=7.2e-38 Score=305.07 Aligned_cols=238 Identities=19% Similarity=0.268 Sum_probs=186.4
Q ss_pred ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCC---CChHHHHHHH
Q psy2302 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQC---GLSKVEAARI 77 (292)
Q Consensus 2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~di---G~~Ka~a~~~ 77 (292)
+|+++|+ ++|+++||+|+|+||+||.+|++|+++|||+|+|||+|+|+.|||+||+ |+.+|+ |++||+++++
T Consensus 327 llP~l~~----ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~ 402 (664)
T TIGR01381 327 LHPDLQL----ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQK 402 (664)
T ss_pred cCChhhH----HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHH
Confidence 4566666 8999999999999999999999999999999999999999999999986 789999 9999999999
Q ss_pred HHHhhCCCCeEEEEeccc-------cch---------hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302 78 TLQNINPDVTIEVHNFNI-------TLL---------RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT 141 (292)
Q Consensus 78 ~l~~~np~v~v~~~~~~i-------~~~---------~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p 141 (292)
+|+++||+++++.+..+| ++. +++.+++ .++|+|++|+||+++|+++|.+|.++++|
T Consensus 403 ~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li-------~~~DvV~d~tDn~esR~L~n~~c~~~~kp 475 (664)
T TIGR01381 403 ALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLI-------KDHDVVFLLLDSREARWLPTVLCSRHKKI 475 (664)
T ss_pred HHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHH-------hhCCEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999998875 321 3455565 78999999999999999999999999999
Q ss_pred eeecCcccceeEEEEEeec------------------CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHH
Q psy2302 142 WFESGVSENAVSGHIQLII------------------PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAG 203 (292)
Q Consensus 142 ~i~~~~~~~~~~G~v~~~~------------------p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivas 203 (292)
+|+++ . ++.|++.+.. +.+.+||.|...-.+......+++.+ .|+ .+.|..+++|+
T Consensus 476 lI~aA-l--Gfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDq--qCt-VtrPgv~~ias 549 (664)
T TIGR01381 476 AISAA-L--GFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQ--QCT-VTRPGTAMIAS 549 (664)
T ss_pred EEEEE-e--ccceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccc--cce-EecchHHHHHH
Confidence 99985 3 4788776540 12689999994333233333344333 243 47788999999
Q ss_pred HHHHHHHHHHhCCCCC-----------------CeeEEEeCCCCCeeeeeccCCCCCCCccccchhh-hcccC
Q psy2302 204 FLVQNALKKLLKFGEV-----------------SWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQK-EFNAR 258 (292)
Q Consensus 204 l~a~e~lk~l~g~~~~-----------------~~~~~~d~~~~~~~~~~l~~~p~C~~~~C~~~~~-~~~~~ 258 (292)
++|.|+|+.|+..+.. .+.++-.+.+.+.....-++.++|. .|+.... +|...
T Consensus 550 ~~AvEll~~llqhp~~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~--aCs~~v~~~y~~~ 620 (664)
T TIGR01381 550 GLAVELLVSVLQHPLPSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCV--ACSDAVAAEYQQR 620 (664)
T ss_pred HHHHHHHHHHhcCCcccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCccc--CCCHHHHHHHHhc
Confidence 9999999999986421 1333333333334455557899999 7998763 35443
No 23
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=3.3e-37 Score=282.20 Aligned_cols=144 Identities=33% Similarity=0.578 Sum_probs=132.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
||+|+|+||+|++++++|+++|||+|+|+|+|.||.+||+||| |+++|+|++|+++++++|+++||+++++.+..++++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 6999999999999999999999999999999999999999987 699999999999999999999999999999988875
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCccCCCC
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP 171 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~C~~ 171 (292)
...-.+++ +++|+||+|.|+.++|.++|++|+++++|+|++++.| +.|++.++.|+.++||+|..
T Consensus 81 ~~~~~~f~-------~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G--~~G~v~vi~p~~t~c~~c~~ 145 (312)
T cd01489 81 PDFNVEFF-------KQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTG--FLGQVQVIKKGKTECYECQP 145 (312)
T ss_pred ccchHHHH-------hcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCc--ceeEEEEEcCCCCCccCCCC
Confidence 22222443 7899999999999999999999999999999998874 89999999999999999984
No 24
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=6.9e-37 Score=270.36 Aligned_cols=144 Identities=27% Similarity=0.493 Sum_probs=133.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
||+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||| |+++|+|++|+++++++++++||+++++.+..++++
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 6999999999999999999999999999999999999999987 689999999999999999999999999999998865
Q ss_pred hhhHH-HHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCccCCCC
Q psy2302 98 LRKVG-ALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP 171 (292)
Q Consensus 98 ~~~~~-~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~C~~ 171 (292)
.+.+. ++ ++++|+||+|+||.++|.++|++|+++++|+|++|+.| +.|++.++.|+.++||+|.+
T Consensus 81 ~~~~~~~f-------~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G--~~G~v~vi~p~~t~c~~C~~ 146 (234)
T cd01484 81 EQDFNDTF-------FEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEG--FKGNAQVILPGMTECIECTL 146 (234)
T ss_pred hhhchHHH-------HhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccC--CceEEEEEcCCCCCCcccCC
Confidence 33332 33 37899999999999999999999999999999999864 89999999999999999996
No 25
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=2e-36 Score=306.52 Aligned_cols=220 Identities=21% Similarity=0.311 Sum_probs=186.8
Q ss_pred ccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhh
Q psy2302 4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNI 82 (292)
Q Consensus 4 ~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~ 82 (292)
..||. +.|++|+++||+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|||||+ ++.+|||++|+++++++|+++
T Consensus 320 ~lig~-e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I 398 (989)
T PRK14852 320 GLVDY-AGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV 398 (989)
T ss_pred hhcCH-HHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH
Confidence 45899 9999999999999999999999999999999999999999999999999987 699999999999999999999
Q ss_pred CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
||+++|+.++..++. +++++++ .++|+||||+|++ ..+..+++.|+++++|+|.+++.+ +.|++.++.
T Consensus 399 NP~v~I~~~~~~I~~-en~~~fl-------~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G--~~g~v~v~~ 468 (989)
T PRK14852 399 NPFLDIRSFPEGVAA-ETIDAFL-------KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG--YSCALLVFM 468 (989)
T ss_pred CCCCeEEEEecCCCH-HHHHHHh-------hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc--cCeeEEEEc
Confidence 999999999999986 7888876 7899999999985 467788889999999999998874 899999998
Q ss_pred CCCCCccCCCCCCccCCC---------------------cchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC
Q psy2302 161 PGESACFACAPPLIVASS---------------------IDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV 219 (292)
Q Consensus 161 p~~t~C~~C~~~~~~~~~---------------------~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~ 219 (292)
|+. +||+|+|+...... .+....+-.+...||++..+.+.|++++.+++|+++|.+..
T Consensus 469 p~~-~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~ 547 (989)
T PRK14852 469 PGG-MNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGI 547 (989)
T ss_pred CCC-CCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCcc
Confidence 864 99999986421100 00111111122357888899999999999999999999875
Q ss_pred ---CeeEEEeCCCCCeeee
Q psy2302 220 ---SWYLGYSALTDFFPKM 235 (292)
Q Consensus 220 ---~~~~~~d~~~~~~~~~ 235 (292)
.+.+.||...+.+.+-
T Consensus 548 ~~~p~~~qfd~~~~~~~~~ 566 (989)
T PRK14852 548 RPVPYFRQFDPLTGRHVRG 566 (989)
T ss_pred ccCcchhccchhhccccee
Confidence 5778888888766543
No 26
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=300.35 Aligned_cols=221 Identities=24% Similarity=0.320 Sum_probs=186.8
Q ss_pred cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhC
Q psy2302 5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNIN 83 (292)
Q Consensus 5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~n 83 (292)
.||. +.|++|+++||+|+|+||+||+++++|+++|||+|+|+|+|.|+++|||||+ |+.+|+|++|+++++++|+++|
T Consensus 32 l~g~-e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in 110 (679)
T PRK14851 32 LFTP-GEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN 110 (679)
T ss_pred hcCH-HHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC
Confidence 4788 9999999999999999999999999999999999999999999999999987 6899999999999999999999
Q ss_pred CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC--HHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302 84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN--FEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP 161 (292)
Q Consensus 84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~--~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p 161 (292)
|+++|+.++..++. +++.+++ .++|+||||+|+ ..+|.+|++.|.++++|+|.+++.+ +.|++.++.|
T Consensus 111 P~~~I~~~~~~i~~-~n~~~~l-------~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G--~~g~~~~~~p 180 (679)
T PRK14851 111 PFLEITPFPAGINA-DNMDAFL-------DGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG--YSSAMLVFTP 180 (679)
T ss_pred CCCeEEEEecCCCh-HHHHHHH-------hCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc--ccceEEEEcC
Confidence 99999999999986 7887776 689999999997 4688999999999999999998874 8999999988
Q ss_pred CCCCccCCCCCCccCCC---------------------cchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-
Q psy2302 162 GESACFACAPPLIVASS---------------------IDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV- 219 (292)
Q Consensus 162 ~~t~C~~C~~~~~~~~~---------------------~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~- 219 (292)
+ +.||.|+|....... .+.....-.+...+|+...+..++++++.|++|+|++.+..
T Consensus 181 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
T PRK14851 181 Q-GMGFDDYFNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLR 259 (679)
T ss_pred C-CCCHhHhccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeee
Confidence 7 799999975422100 01111100111236677888899999999999999998875
Q ss_pred --CeeEEEeCCCCCeeeeec
Q psy2302 220 --SWYLGYSALTDFFPKMKL 237 (292)
Q Consensus 220 --~~~~~~d~~~~~~~~~~l 237 (292)
.++..||...+.+....+
T Consensus 260 ~~p~~~~~d~~~~~~~~~~~ 279 (679)
T PRK14851 260 PVPCYLQFDPFLQKLRKGRL 279 (679)
T ss_pred ccchhhhcchhhcceeEEEe
Confidence 477888888777765555
No 27
>KOG2015|consensus
Probab=100.00 E-value=1.8e-35 Score=263.50 Aligned_cols=230 Identities=27% Similarity=0.441 Sum_probs=189.7
Q ss_pred HHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302 10 ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI 88 (292)
Q Consensus 10 ~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v 88 (292)
|..+-|.+.||+|+|+||+||+++++|+.+|++.+.+||.|+++.+|||||| |++.|+|++|+++|++.+.+..|.+.|
T Consensus 33 e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v 112 (422)
T KOG2015|consen 33 ENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVV 112 (422)
T ss_pred HHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEE
Confidence 6678889999999999999999999999999999999999999999999988 899999999999999999999999999
Q ss_pred EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh---C-------CceeecCcccceeEEEEEe
Q psy2302 89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL---G-------QTWFESGVSENAVSGHIQL 158 (292)
Q Consensus 89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~---~-------~p~i~~~~~~~~~~G~v~~ 158 (292)
..|..+|.+ . -.++ +++||+||...|+.++|+|||....+. | +|+|++|..| +.|++.+
T Consensus 113 ~~h~~kIqd-~-~~~F-------Yk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG--~KG~arv 181 (422)
T KOG2015|consen 113 VPHRQKIQD-K-PISF-------YKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEG--FKGHARV 181 (422)
T ss_pred eeeecchhc-C-CHHH-------HhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCccc--ccceeEE
Confidence 999998875 1 1222 378999999999999999999976653 3 5999999975 8999999
Q ss_pred ecCCCCCccCCCC---CCcc--------------C----------------C----Ccc-h--------hhhhhc-----
Q psy2302 159 IIPGESACFACAP---PLIV--------------A----------------S----SID-E--------KTLKKD----- 187 (292)
Q Consensus 159 ~~p~~t~C~~C~~---~~~~--------------~----------------~----~~~-~--------~~~~~~----- 187 (292)
+.|+.|+|+.|.. |... + . +.+ + +.+.++
T Consensus 182 I~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I 261 (422)
T KOG2015|consen 182 IYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFNI 261 (422)
T ss_pred EecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 9999999999972 1110 0 0 000 0 111111
Q ss_pred ---------Ccc---CCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCC-eeeeeccCCCCCCCccccchh
Q psy2302 188 ---------GVC---AASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDF-FPKMKLKPNPSCDDSYCVQRQ 252 (292)
Q Consensus 188 ---------~~~---~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~-~~~~~l~~~p~C~~~~C~~~~ 252 (292)
|+. .|++..+++++|+..|.||+|+++....+ .+++.|+...+- ..++.+.|.++|+ +|+...
T Consensus 262 ~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~~er~~nC~--vCS~~~ 338 (422)
T KOG2015|consen 262 TGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFLLERDKNCP--VCSNLV 338 (422)
T ss_pred ccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEeeeccCCCCc--cccCCC
Confidence 111 25566778999999999999999998777 788899888775 4688999999999 899754
No 28
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=293.35 Aligned_cols=208 Identities=21% Similarity=0.236 Sum_probs=172.9
Q ss_pred cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302 5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN 83 (292)
Q Consensus 5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n 83 (292)
.||. +.|++|++++|+|+|+| +||.+|.+|+++|| |+|+|+|+|.||+||||||+|+..|+|++|+++++++|+++|
T Consensus 96 ~ig~-~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in 173 (722)
T PRK07877 96 KITA-EEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD 173 (722)
T ss_pred hCCH-HHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC
Confidence 4788 99999999999999997 99999999999996 999999999999999999989999999999999999999999
Q ss_pred CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEE----Eee
Q psy2302 84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHI----QLI 159 (292)
Q Consensus 84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v----~~~ 159 (292)
|+++|+++..+++. +++++++ .++|+||||+||+++|.+||++|.++++|||.++..+ |++ .-+
T Consensus 174 p~i~v~~~~~~i~~-~n~~~~l-------~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~----g~~~~e~~~~ 241 (722)
T PRK07877 174 PYLPVEVFTDGLTE-DNVDAFL-------DGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR----GLLDVERFDL 241 (722)
T ss_pred CCCEEEEEeccCCH-HHHHHHh-------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC----CCcCcceeee
Confidence 99999999999996 8888887 6899999999999999999999999999999987543 444 234
Q ss_pred cCCCCCccCCCCCCccCCCcc----------------hhh--------hhhcCc---cCCCCchHHHHHHHHHHHHHHHH
Q psy2302 160 IPGESACFACAPPLIVASSID----------------EKT--------LKKDGV---CAASLPTTMGIVAGFLVQNALKK 212 (292)
Q Consensus 160 ~p~~t~C~~C~~~~~~~~~~~----------------~~~--------~~~~~~---~~~s~~~~~~ivasl~a~e~lk~ 212 (292)
.| .++||.|+++........ .+. +-+.+. ..|+++..+.+.|++++..+.|+
T Consensus 242 ~p-~~pc~~cl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~s~~~~~~~~~~~pql~~~~~~~~~~~~~~~~~i 320 (722)
T PRK07877 242 EP-DRPILHGLLGDIDAAKLAGLSTKDKVPHVLRILDAEALSARMAASLVEVDQTLSTWPQLASDVVLGAAAVAEAVRRI 320 (722)
T ss_pred CC-CCceeeccCCCCChhhhccCChhccCcceeeeccccccCHHHHHHHHhccCccccCCchHHHHHhhHHHHHHHHHHH
Confidence 56 789999999865322110 000 001111 13567788889999999999999
Q ss_pred HhCCCCCCeeEEEeC
Q psy2302 213 LLKFGEVSWYLGYSA 227 (292)
Q Consensus 213 l~g~~~~~~~~~~d~ 227 (292)
++|..-++..+..|.
T Consensus 321 ~l~~~~~sgr~~~~~ 335 (722)
T PRK07877 321 GLGEPLESGRVRVDL 335 (722)
T ss_pred HcCCcCCCCCEEecH
Confidence 999776654445554
No 29
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=2.6e-34 Score=260.24 Aligned_cols=151 Identities=21% Similarity=0.340 Sum_probs=136.2
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN 81 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~ 81 (292)
|+.||. ++|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+.+||+||| ++++|+|++|+++++++|++
T Consensus 6 l~~~G~-eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e 84 (286)
T cd01491 6 LYVLGH-EAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE 84 (286)
T ss_pred eeccCH-HHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH
Confidence 566999 9999999999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302 82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP 161 (292)
Q Consensus 82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p 161 (292)
+||+++++.+...++. + .+ .++|+||+|.|+...+.+||++|+++++|||.+++.+ +.|++.. .+
T Consensus 85 LNp~V~V~~~~~~~~~-~----~l-------~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G--~~G~vf~-df 149 (286)
T cd01491 85 LNPYVPVTVSTGPLTT-D----EL-------LKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRG--LFGSIFC-DF 149 (286)
T ss_pred HCCCCEEEEEeccCCH-H----HH-------hcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccc--cEEEEEe-cC
Confidence 9999999999876543 2 22 6899999999999999999999999999999998864 8998765 23
Q ss_pred CCCCccCCCC
Q psy2302 162 GESACFACAP 171 (292)
Q Consensus 162 ~~t~C~~C~~ 171 (292)
++||.|..
T Consensus 150 --g~~f~~~d 157 (286)
T cd01491 150 --GDEFTVYD 157 (286)
T ss_pred --CCeEEEeC
Confidence 47777764
No 30
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=1.9e-34 Score=244.85 Aligned_cols=171 Identities=29% Similarity=0.368 Sum_probs=146.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL 98 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~ 98 (292)
||+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||+|..+|+|++|+++++++|+++||+++++.++.+++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~- 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE- 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh-
Confidence 6999999999999999999999999999999999999999999888999999999999999999999999999999876
Q ss_pred hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCceeecCcccceeEEEEEeecCCC--CCccCCCCCCcc
Q psy2302 99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTWFESGVSENAVSGHIQLIIPGE--SACFACAPPLIV 175 (292)
Q Consensus 99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~i~~~~~~~~~~G~v~~~~p~~--t~C~~C~~~~~~ 175 (292)
+++.+++ .++|+||+|+|++.+|..+++.|.++ ++|||.++.. ++.|++.++.|+. .+||+|.....
T Consensus 80 ~~~~~~l-------~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (174)
T cd01487 80 NNLEGLF-------GDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGM--AGFGDSNNIKTKKISDNFYICGDLVN- 149 (174)
T ss_pred hhHHHHh-------cCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehh--hccCCeEEEEecCCCCCeEEeecCCC-
Confidence 6666665 78999999999999999888888877 9999998655 3577777776655 57999982110
Q ss_pred CCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHH
Q psy2302 176 ASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNAL 210 (292)
Q Consensus 176 ~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~l 210 (292)
..+... +.++|+++++|+++|+|+|
T Consensus 150 ------~~~~~~----g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 150 ------EAKEGL----GLMAPRVNICAAHQANLVL 174 (174)
T ss_pred ------CCCCCc----CccccHHHHHHHHHHHhhC
Confidence 112233 3488999999999999985
No 31
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=100.00 E-value=2.4e-34 Score=249.25 Aligned_cols=188 Identities=28% Similarity=0.399 Sum_probs=151.6
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI 82 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~ 82 (292)
.++.|. +.|++|+++||+|+|+||+|+.+|++|+++||++++|+|+|.|+++||+||+|..+|+|++|+++++++|+++
T Consensus 8 ~~~~~~-~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~i 86 (200)
T TIGR02354 8 VARHTP-KIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEI 86 (200)
T ss_pred HHhcCH-HHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHH
Confidence 456788 9999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH-HHhCCceeecCcccceeEEEE--Eee
Q psy2302 83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC-NQLGQTWFESGVSENAVSGHI--QLI 159 (292)
Q Consensus 83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~-~~~~~p~i~~~~~~~~~~G~v--~~~ 159 (292)
||+++++.+..+++. +++.+++ .++|+||+|+|++++|..+++.| ..++.+++.++ + ++.|+. ..+
T Consensus 87 np~~~i~~~~~~i~~-~~~~~~~-------~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~-~--g~~g~~~~~~~ 155 (200)
T TIGR02354 87 NPYTEIEAYDEKITE-ENIDKFF-------KDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA-S--GLAGYDDANSI 155 (200)
T ss_pred CCCCEEEEeeeeCCH-hHHHHHh-------cCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE-e--ccccCCCCceE
Confidence 999999999999986 7777665 78999999999999998765554 45444443332 2 244443 333
Q ss_pred cCC--CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHH
Q psy2302 160 IPG--ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKL 213 (292)
Q Consensus 160 ~p~--~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l 213 (292)
.+. ...||.|-... . ..+...|+ ++|.++++|+++|.+++|++
T Consensus 156 ~~~~~~~~~~~~~~~~------~-~~~~~~g~----~~p~v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 156 KTRKISKHFYLCGDGK------S-DAKQGLGL----MAPRVQICAAHQANLVLELI 200 (200)
T ss_pred EecccCCCEEEcCCCC------C-cccCCCCC----chhHHHHHHHHHHHHHHHhC
Confidence 332 35688883321 1 12233344 89999999999999999984
No 32
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=100.00 E-value=1.6e-33 Score=254.16 Aligned_cols=226 Identities=18% Similarity=0.272 Sum_probs=166.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCC--CCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQ--CGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~d--iG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+||+||+ |+.+| +|++|+++++++|+++||+++++.+...|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999986 68888 99999999999999999999999998665
Q ss_pred ----------------cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEee
Q psy2302 96 ----------------TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLI 159 (292)
Q Consensus 96 ----------------~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~ 159 (292)
.+.+++.+++ +++|+|++|+|++++|++++.+|.++++|+|+++. ++.|++...
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li-------~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aal---Gfdg~lvmr 150 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELI-------KDHDVIFLLTDSRESRWLPTLLSAAKNKLVINAAL---GFDSYLVMR 150 (307)
T ss_pred cccccccccccccccccCHHHHHHHH-------hhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEe---ccceEEEEE
Confidence 1234566666 78999999999999999999999999999998644 356665433
Q ss_pred c---C----------------CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCC--
Q psy2302 160 I---P----------------GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGE-- 218 (292)
Q Consensus 160 ~---p----------------~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~-- 218 (292)
. + .+.+||.|..--.+......+++.+. |+-. .|..+.+||-+|.|.+--|+..+.
T Consensus 151 hg~~~~~~~~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqq--ctvt-rpG~a~ias~~avEl~~s~lqhp~~~ 227 (307)
T cd01486 151 HGAGPQSQSGSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQ--CTVT-RPGLSMIASSIAVELLVSLLQHPLGG 227 (307)
T ss_pred eCCCcccccccccccccccCCCCcceeeeCCEecCCCCCCCcccCcc--ccee-cCchHHHHHHHHHHHHHHHHcCCCcc
Confidence 2 1 15789999864433344444554443 3332 333445556566666666666431
Q ss_pred --C------------------CeeEEEeCCCCCeeeeeccCCCCCCCccccchhh-hcccCc
Q psy2302 219 --V------------------SWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQK-EFNARP 259 (292)
Q Consensus 219 --~------------------~~~~~~d~~~~~~~~~~l~~~p~C~~~~C~~~~~-~~~~~~ 259 (292)
+ .+.++-.+.+.+.....-++.+.|. .|+.... +|.+.+
T Consensus 228 ~a~~~~~~~~~~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~--aCs~~v~~~y~~~g 287 (307)
T cd01486 228 HAPAESSSNEGDEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCT--ACSDAVIDEYHREG 287 (307)
T ss_pred CCCCccccccCCCCCCcCccCCeeeeeehhhCeeeeecccCCCccc--cCCHHHHHHHHhcc
Confidence 1 1233333333333444457899999 7998763 354444
No 33
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.98 E-value=1.4e-31 Score=218.05 Aligned_cols=133 Identities=38% Similarity=0.678 Sum_probs=119.5
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
|++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||+ ++.+|+|++|+++++++|+++||+++++.++.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 5789999999999999999999999999999999999999999986 578899999999999999999999999999999
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL 158 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~ 158 (292)
++. +++.+++ +++|+||+|+|+.+++.+++++|+++++|||.+++.+ +.|++..
T Consensus 81 ~~~-~~~~~~~-------~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g--~~G~~~~ 134 (135)
T PF00899_consen 81 IDE-ENIEELL-------KDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNG--FYGQVVM 134 (135)
T ss_dssp CSH-HHHHHHH-------HTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEET--TEEEEEE
T ss_pred ccc-ccccccc-------cCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeec--CEEEEEE
Confidence 965 6777776 5899999999999999999999999999999998874 6887643
No 34
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.98 E-value=3.5e-31 Score=234.60 Aligned_cols=210 Identities=23% Similarity=0.255 Sum_probs=165.3
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCC-----C-----eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGI-----G-----KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP 84 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gv-----g-----~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np 84 (292)
-+..||+|||+||+||+++++|+++|+ | +|+|+|+|+|+++||+||+|.+.|+|++|++++++++.+++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~- 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAM- 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhcc-
Confidence 478899999999999999999999973 4 99999999999999999999999999999999999999988
Q ss_pred CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHH---hCCceeecCcccc------ee---
Q psy2302 85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ---LGQTWFESGVSEN------AV--- 152 (292)
Q Consensus 85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~---~~~p~i~~~~~~~------~~--- 152 (292)
+++++++..+++. +.+ + .++|+||+|+||.++|..|++.|.+ ..+||+++|.... +.
T Consensus 88 ~~~i~a~~~~~~~-~~~---~-------~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~ 156 (244)
T TIGR03736 88 GTDWTAHPERVER-SST---L-------HRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPS 156 (244)
T ss_pred CceEEEEEeeeCc-hhh---h-------cCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEeccc
Confidence 8999999988875 221 2 5799999999999999999999988 2489999988432 11
Q ss_pred --EEEEEeecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCC
Q psy2302 153 --SGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALT 229 (292)
Q Consensus 153 --~G~v~~~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~ 229 (292)
.|+..++.|..|.||.|......++..+.+.|..+....+ .......+++.+|...|.-|+..+.. .+...+|+.+
T Consensus 157 ~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~-Q~l~iN~~~a~~~~~~L~~lf~~g~~~~~g~~~nl~~ 235 (244)
T TIGR03736 157 RAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAK-QSLFINQAIAVFAMNLLWKLFRKGRLEFHGVFVNLAT 235 (244)
T ss_pred ccccCCceecCCchhhCcccccCccCCCCCCCCchHHHHhcC-chhHHHHHHHHHHHHHHHHHHhcCceeeeEEEEECCC
Confidence 3555777898999999886432222234556654443322 23344556667777888888888877 5778889988
Q ss_pred CCeeeeec
Q psy2302 230 DFFPKMKL 237 (292)
Q Consensus 230 ~~~~~~~l 237 (292)
+..+.+++
T Consensus 236 ~~~~p~~v 243 (244)
T TIGR03736 236 GRTNPLPV 243 (244)
T ss_pred CccccccC
Confidence 87776554
No 35
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=1.3e-31 Score=236.41 Aligned_cols=136 Identities=32% Similarity=0.485 Sum_probs=125.8
Q ss_pred CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHhhCC
Q psy2302 6 MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQNINP 84 (292)
Q Consensus 6 ~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~~np 84 (292)
+|. ++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||++ ..+|+|++|+++++++|+++||
T Consensus 1 ~G~-e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP 79 (231)
T cd00755 1 YGE-EGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP 79 (231)
T ss_pred CCH-HHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence 477 99999999999999999999999999999999999999999999999999985 6899999999999999999999
Q ss_pred CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
+++++.+..+++. +++.+++. .++|+||+|.|+...+..++++|+++++|+|.++..+
T Consensus 80 ~~~V~~~~~~i~~-~~~~~l~~------~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 80 ECEVDAVEEFLTP-DNSEDLLG------GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred CcEEEEeeeecCH-hHHHHHhc------CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9999999999886 67766652 4699999999999999999999999999999875544
No 36
>KOG2013|consensus
Probab=99.97 E-value=2.4e-32 Score=254.18 Aligned_cols=155 Identities=30% Similarity=0.534 Sum_probs=142.7
Q ss_pred hHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCC
Q psy2302 8 IVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDV 86 (292)
Q Consensus 8 ~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v 86 (292)
..+-++.++++||+||||||+||+++++|++.|+++|+|||-|+|+.||||||| |+.++||++||.+|++..+++||.+
T Consensus 3 ~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~ 82 (603)
T KOG2013|consen 3 PREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNI 82 (603)
T ss_pred hHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCC
Confidence 345678899999999999999999999999999999999999999999999987 7999999999999999999999999
Q ss_pred eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCc
Q psy2302 87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESAC 166 (292)
Q Consensus 87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C 166 (292)
++..+...|.+.+.-.++ |+.||+|++|.||.++|..+|+.|....+|+|.+|..| +.||+.++.+|.|.|
T Consensus 83 ~l~~yhanI~e~~fnv~f-------f~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~G--f~GQv~~ii~GkTEC 153 (603)
T KOG2013|consen 83 KLVPYHANIKEPKFNVEF-------FRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGG--FLGQVQVIIKGKTEC 153 (603)
T ss_pred ceEeccccccCcchHHHH-------HHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCccc--ccceEEEEecCCcce
Confidence 999999999874222233 37899999999999999999999999999999999874 899999999999999
Q ss_pred cCCCC
Q psy2302 167 FACAP 171 (292)
Q Consensus 167 ~~C~~ 171 (292)
|.|..
T Consensus 154 yeC~p 158 (603)
T KOG2013|consen 154 YECIP 158 (603)
T ss_pred ecccC
Confidence 99984
No 37
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.97 E-value=1.7e-31 Score=253.37 Aligned_cols=147 Identities=27% Similarity=0.465 Sum_probs=132.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
||+|||+||+||+++++|+++|| |+|+|+|+|+||.+||+||| |+++|||++|+++++++++++||+++++.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 99999999999999999987 7899999999999999999999999999999
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCccCCCC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP 171 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~C~~ 171 (292)
.++.. ++.. ++ ...++.++|+||+|.||.++|.++|+.|+.+++|++++|+.| +.|+++++.|+.|.||+|..
T Consensus 81 ~~v~~-~~~~-~~--~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G--~~G~v~v~iP~~te~y~~~~ 153 (435)
T cd01490 81 NRVGP-ETEH-IF--NDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLG--TKGNTQVVIPHLTESYSSSR 153 (435)
T ss_pred cccCh-hhhh-hh--hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccc--ceeEEEEEeCCCCCCccCCC
Confidence 88864 2211 11 011247899999999999999999999999999999999875 79999999999999999984
No 38
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.97 E-value=5.2e-31 Score=272.29 Aligned_cols=158 Identities=25% Similarity=0.453 Sum_probs=145.1
Q ss_pred ccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHH
Q psy2302 4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARI 77 (292)
Q Consensus 4 ~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~ 77 (292)
+.||. +.|++|+++||+|||+||+||+++++|+++|| |+|+|+|+|.|+.|||+||| |+.+|||++|++++++
T Consensus 407 ~l~G~-~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~ 485 (1008)
T TIGR01408 407 AVFGD-TFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAAD 485 (1008)
T ss_pred HHcCH-HHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHH
Confidence 45998 99999999999999999999999999999999 89999999999999999987 6899999999999999
Q ss_pred HHHhhCCCCeEEEEeccccch-hhH--HHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEE
Q psy2302 78 TLQNINPDVTIEVHNFNITLL-RKV--GALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSG 154 (292)
Q Consensus 78 ~l~~~np~v~v~~~~~~i~~~-~~~--~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G 154 (292)
+++++||+++++++..+++.. +++ .++ +.++|+||+|.||..+|.++|+.|+++++|+|.+|+.| +.|
T Consensus 486 ~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f-------~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G--~~G 556 (1008)
T TIGR01408 486 ATLKINPQIKIDAHQNRVGPETETIFNDEF-------YEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLG--TKG 556 (1008)
T ss_pred HHHHHCCCCEEEEEEeecChhhhhhhhHHH-------hhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccC--cee
Confidence 999999999999999988641 122 122 37899999999999999999999999999999999874 899
Q ss_pred EEEeecCCCCCccCCCC
Q psy2302 155 HIQLIIPGESACFACAP 171 (292)
Q Consensus 155 ~v~~~~p~~t~C~~C~~ 171 (292)
+++++.|+.|.||.|..
T Consensus 557 ~v~v~ip~~te~y~~~~ 573 (1008)
T TIGR01408 557 NTQVVVPHLTESYGSSR 573 (1008)
T ss_pred eEEEEeCCCcCCCCCCC
Confidence 99999999999999984
No 39
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.97 E-value=1e-30 Score=226.33 Aligned_cols=137 Identities=30% Similarity=0.440 Sum_probs=128.4
Q ss_pred cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHhhC
Q psy2302 5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQNIN 83 (292)
Q Consensus 5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~~n 83 (292)
.+|. ++.++|++++|+|+|+||+||+++..|+|+|+|+|+|||.|.|+.+|+|||.. ...++|++|++++++|++++|
T Consensus 19 l~G~-~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~In 97 (263)
T COG1179 19 LYGE-DGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQIN 97 (263)
T ss_pred HcCh-hHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhC
Confidence 3677 88999999999999999999999999999999999999999999999999986 578999999999999999999
Q ss_pred CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
|+++|+.++..++. +++++++. .++|+||||.|+..++..+-.+|+++++|+|.++..+
T Consensus 98 P~c~V~~~~~f~t~-en~~~~~~------~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag 156 (263)
T COG1179 98 PECEVTAINDFITE-ENLEDLLS------KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG 156 (263)
T ss_pred CCceEeehHhhhCH-hHHHHHhc------CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence 99999999999997 89988873 6899999999999999999999999999999876544
No 40
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=2.7e-30 Score=232.02 Aligned_cols=138 Identities=28% Similarity=0.433 Sum_probs=126.5
Q ss_pred ccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhh
Q psy2302 4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNI 82 (292)
Q Consensus 4 ~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~ 82 (292)
+.||. ++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+++|+|||+ +..+++|++|+++++++++++
T Consensus 18 ~L~G~-e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I 96 (268)
T PRK15116 18 RLYGE-KALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI 96 (268)
T ss_pred HHhCH-HHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence 45999 9999999999999999999999999999999999999999999999999998 568899999999999999999
Q ss_pred CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
||+++++.+...++. ++..+++. .++|+||+|.|++.++..++++|+++++|+|.++..+
T Consensus 97 NP~~~V~~i~~~i~~-e~~~~ll~------~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 97 NPECRVTVVDDFITP-DNVAEYMS------AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred CCCcEEEEEecccCh-hhHHHHhc------CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 999999999888774 67766652 4799999999999999999999999999999875543
No 41
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.97 E-value=1.7e-29 Score=207.65 Aligned_cols=132 Identities=37% Similarity=0.622 Sum_probs=120.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
||+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||+| +++|+|++|+++++++++++||+++++.++..++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999886 59999999999999999999999999999988875
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
.+..+++ .++|+||+|+|+.+.|..++++|+++++||+.+++.+ +.|++..+.
T Consensus 81 -~~~~~~~-------~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g--~~g~~~~~~ 133 (143)
T cd01483 81 -DNLDDFL-------DGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLG--LGGDIQVID 133 (143)
T ss_pred -hhHHHHh-------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--cEEEEEEEE
Confidence 3334444 7899999999999999999999999999999999875 788877665
No 42
>PRK06153 hypothetical protein; Provisional
Probab=99.96 E-value=6.2e-29 Score=230.91 Aligned_cols=135 Identities=22% Similarity=0.291 Sum_probs=121.8
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc--cCcCCCCC--hHHHHHHHH
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF--FQPDQCGL--SKVEAARIT 78 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~--~~~~diG~--~Ka~a~~~~ 78 (292)
..+-|+.+.|++|++++|+||||||+||.++..|+|+||++|+|+|+|.|+++||+||+ |..+|+|+ +|+++++++
T Consensus 162 s~R~~i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~r 241 (393)
T PRK06153 162 SSRAGIGALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSR 241 (393)
T ss_pred ccccChHHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHH
Confidence 34567777899999999999999999999999999999999999999999999999986 68899999 999999999
Q ss_pred HHhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcc
Q psy2302 79 LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVS 148 (292)
Q Consensus 79 l~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~ 148 (292)
+.++++. +..+...++. +++.. + .++|+||+|+|+.++|.+|+++|.++++|||++|+.
T Consensus 242 l~~in~~--I~~~~~~I~~-~n~~~-L-------~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 242 YSNMRRG--IVPHPEYIDE-DNVDE-L-------DGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HHHhCCe--EEEEeecCCH-HHHHH-h-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 9999984 5677778864 66543 2 689999999999999999999999999999998764
No 43
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.95 E-value=4.1e-28 Score=231.00 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=133.9
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN 81 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~ 81 (292)
|+.||. ++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|+| ++.+|+|++|+++++++|++
T Consensus 7 lrLwG~-~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~e 85 (425)
T cd01493 7 LRLWGE-HGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQE 85 (425)
T ss_pred HHHhHH-HHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHH
Confidence 567999 9999999999999999999999999999999999999999999999999987 58899999999999999999
Q ss_pred hCCCCeEEEEeccccch-hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302 82 INPDVTIEVHNFNITLL-RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII 160 (292)
Q Consensus 82 ~np~v~v~~~~~~i~~~-~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~ 160 (292)
+||+|+++.+...++.. ++-.++ +.++|+||++.++...+..++++|+++++|+|.++..| +.|++.+..
T Consensus 86 LNp~V~i~~~~e~~~~ll~~~~~f-------~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G--~~G~v~v~~ 156 (425)
T cd01493 86 LNPDVNGSAVEESPEALLDNDPSF-------FSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYG--LYGYIRIQL 156 (425)
T ss_pred HCCCCEEEEEecccchhhhhHHHH-------hcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccc--CEEEEEEEE
Confidence 99999999988665421 111233 37899999999999999999999999999999998874 899998888
Q ss_pred CC
Q psy2302 161 PG 162 (292)
Q Consensus 161 p~ 162 (292)
|.
T Consensus 157 ~~ 158 (425)
T cd01493 157 KE 158 (425)
T ss_pred CC
Confidence 73
No 44
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=4.7e-27 Score=243.01 Aligned_cols=151 Identities=20% Similarity=0.292 Sum_probs=134.1
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN 81 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~ 81 (292)
++.||. ++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||| ++++|||++|+++++++|++
T Consensus 11 i~l~G~-eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~e 89 (1008)
T TIGR01408 11 LYVLGD-EAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAE 89 (1008)
T ss_pred HHhcCH-HHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHH
Confidence 345999 9999999999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC--CceeecCcccceeEEEEEee
Q psy2302 82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG--QTWFESGVSENAVSGHIQLI 159 (292)
Q Consensus 82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~--~p~i~~~~~~~~~~G~v~~~ 159 (292)
+||.|+|+.+...++. + ++ .++|+||+|.++...+..||++|++++ +|+|.+++.| +.|++..-
T Consensus 90 LNp~V~V~~~~~~l~~-e----~l-------~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G--~~G~vf~D 155 (1008)
T TIGR01408 90 LNPYVHVSSSSVPFNE-E----FL-------DKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRG--LFGSLFCD 155 (1008)
T ss_pred HCCCceEEEecccCCH-H----HH-------cCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecc--eEEEEEec
Confidence 9999999999877753 2 33 789999999999999999999999999 8999998874 78876542
Q ss_pred cCCCCCccCCCC
Q psy2302 160 IPGESACFACAP 171 (292)
Q Consensus 160 ~p~~t~C~~C~~ 171 (292)
-+.|+.|..
T Consensus 156 ---~g~~f~~~d 164 (1008)
T TIGR01408 156 ---FGDEFEVLD 164 (1008)
T ss_pred ---CCCceEEEe
Confidence 234555553
No 45
>KOG2014|consensus
Probab=99.93 E-value=4.1e-25 Score=196.05 Aligned_cols=218 Identities=20% Similarity=0.289 Sum_probs=169.2
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQN 81 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~ 81 (292)
+|.||+ ++|++|+++||+|+|.+|+|++++++|..+|||+++++|+..|.+.+++-||| ..+++|+.|+++..+++++
T Consensus 18 IRLWG~-~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~ 96 (331)
T KOG2014|consen 18 IRLWGL-EAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQD 96 (331)
T ss_pred HHHccH-HHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHh
Confidence 477999 99999999999999999999999999999999999999999999999999885 7899999999999999999
Q ss_pred hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302 82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP 161 (292)
Q Consensus 82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p 161 (292)
+||.|++......+.. ....++.+||+||..-.+.+.+..+|..|++++++++.+.+.+ +.|....-.-
T Consensus 97 LNPmV~v~~d~edl~e---------k~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g--~~Gy~F~dL~ 165 (331)
T KOG2014|consen 97 LNPMVDVSVDKEDLSE---------KDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFG--LCGYAFADLQ 165 (331)
T ss_pred cCCceEEEechhhhhh---------cchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccc--eeeeeeeehh
Confidence 9999999987766543 1122458999999999999999999999999999999887764 5554432110
Q ss_pred C---------------------------CCCccCCCCC--------Cc-----------------------------cCC
Q psy2302 162 G---------------------------ESACFACAPP--------LI-----------------------------VAS 177 (292)
Q Consensus 162 ~---------------------------~t~C~~C~~~--------~~-----------------------------~~~ 177 (292)
+ ..-|..|..| .. .+.
T Consensus 166 ~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg 245 (331)
T KOG2014|consen 166 EHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPG 245 (331)
T ss_pred hhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHHHHHhcCCCCc
Confidence 0 0123333321 00 000
Q ss_pred Ccchhh-----------hh-----------hcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCCe
Q psy2302 178 SIDEKT-----------LK-----------KDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDFF 232 (292)
Q Consensus 178 ~~~~~~-----------~~-----------~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~~ 232 (292)
...... +. ......+-++|+++++|+..|+|+||.+++.++| ++++.||+.++.-
T Consensus 246 ~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~g 323 (331)
T KOG2014|consen 246 ETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGKG 323 (331)
T ss_pred cccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCce
Confidence 000000 00 0111234578999999999999999999999888 7899999998753
No 46
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.93 E-value=2.3e-25 Score=215.77 Aligned_cols=210 Identities=16% Similarity=0.181 Sum_probs=165.0
Q ss_pred HHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302 10 ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE 89 (292)
Q Consensus 10 ~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~ 89 (292)
..+++.+++||+|+|.|++|+.++..|+++|+++|..+|+|.+ .+|++| ||+. ++.+++ .||.+.++
T Consensus 122 ~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR-------IgEl-~e~A~~----~n~~v~v~ 188 (637)
T TIGR03693 122 LKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR-------IHEL-AEIAEE----TDDALLVQ 188 (637)
T ss_pred hhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH-------HHHH-HHHHHH----hCCCCceE
Confidence 5667779999999999999999999999999999999999999 999999 6776 655555 89999999
Q ss_pred EEeccccchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhCCceeecCcccc-eeEEEEEeecCCCCCc
Q psy2302 90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLGQTWFESGVSEN-AVSGHIQLIIPGESAC 166 (292)
Q Consensus 90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~~p~i~~~~~~~-~~~G~v~~~~p~~t~C 166 (292)
.++. +..+++.+.+ +++|+||..+|++ ....++|+.|++.|+|||.+...+. ++.| +++.|++++|
T Consensus 189 ~i~~--~~~~dl~ev~-------~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liG--PlftPgkTGC 257 (637)
T TIGR03693 189 EIDF--AEDQHLHEAF-------EPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAG--PVFQQHGDEC 257 (637)
T ss_pred eccC--CcchhHHHhh-------cCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeec--ceECCCCCcH
Confidence 9876 3336666665 7999999999965 4568899999999987776655441 3445 6777999999
Q ss_pred cCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC---CeeEEEeCCCCCeeeeeccCCCCC
Q psy2302 167 FACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV---SWYLGYSALTDFFPKMKLKPNPSC 243 (292)
Q Consensus 167 ~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~---~~~~~~d~~~~~~~~~~l~~~p~C 243 (292)
|.|++....... +.+.....++.|++.++++++++.|++|++++.... ++++.+|..++....+.+.|+|+|
T Consensus 258 WeCa~~RL~e~~-----L~~~~~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~~WH~vvkrPqC 332 (637)
T TIGR03693 258 FEAAWHRLHESA-----LHEENSLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEGGWHAFIKHPDA 332 (637)
T ss_pred HHHHHHHHHHHh-----cCCCCcccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEccccccccccCCCCCCC
Confidence 999763221111 111111122234458999999999999999986543 688999999999999999999999
Q ss_pred CCccccch
Q psy2302 244 DDSYCVQR 251 (292)
Q Consensus 244 ~~~~C~~~ 251 (292)
+ |..-
T Consensus 333 ~---~~~~ 337 (637)
T TIGR03693 333 S---CEKD 337 (637)
T ss_pred C---CCCc
Confidence 9 7743
No 47
>KOG2018|consensus
Probab=99.90 E-value=3.5e-24 Score=190.92 Aligned_cols=132 Identities=32% Similarity=0.505 Sum_probs=122.9
Q ss_pred CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCC
Q psy2302 6 MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINP 84 (292)
Q Consensus 6 ~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np 84 (292)
+|. +.|++|+++-|+|||+||+||+++.+|+|+|+++|.|||+|.|+++.||||- ....|+|.||+.++++.++++.|
T Consensus 64 fGe-e~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaP 142 (430)
T KOG2018|consen 64 FGE-EGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAP 142 (430)
T ss_pred hhh-hHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCc
Confidence 788 9999999999999999999999999999999999999999999999999987 57899999999999999999999
Q ss_pred CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
+++|++.+.-.+. ++-++++ +..+|+|+||.||..++.-+-++|.++++++|.+
T Consensus 143 w~eIdar~~l~~~-~s~edll------~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss 196 (430)
T KOG2018|consen 143 WCEIDARNMLWTS-SSEEDLL------SGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISS 196 (430)
T ss_pred cceecHHHhhcCC-Cchhhhh------cCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEec
Confidence 9999998877775 6666665 3689999999999999999999999999999865
No 48
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.90 E-value=1e-23 Score=184.73 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=94.2
Q ss_pred cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC
Q psy2302 5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP 84 (292)
Q Consensus 5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np 84 (292)
.||. ++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||||...++|++|+++++++|+++||
T Consensus 15 LwG~-EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eLNP 93 (287)
T PTZ00245 15 LWGK-STQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRLNP 93 (287)
T ss_pred HhCH-HHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHHCC
Confidence 3999 999999999999999999999999999999999999999999999999999864457899999999999999999
Q ss_pred CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
+++|+.++.+++. . .++++||.+.-+
T Consensus 94 ~V~V~~i~~rld~-~-------------n~fqvvV~~~~~ 119 (287)
T PTZ00245 94 HVSVYDAVTKLDG-S-------------SGTRVTMAAVIT 119 (287)
T ss_pred CcEEEEcccccCC-c-------------CCceEEEEEccc
Confidence 9999999877764 1 456776666544
No 49
>KOG2012|consensus
Probab=99.89 E-value=6.3e-24 Score=208.30 Aligned_cols=155 Identities=26% Similarity=0.419 Sum_probs=139.3
Q ss_pred CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHH
Q psy2302 6 MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITL 79 (292)
Q Consensus 6 ~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l 79 (292)
+|- +-|+||.+.|+++||+|++||+++++++.+|| |+|++.|.|.+|.||||||| |++.|||++|+++|++..
T Consensus 420 fG~-~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~ 498 (1013)
T KOG2012|consen 420 FGA-KFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAA 498 (1013)
T ss_pred hch-HHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHH
Confidence 566 78999999999999999999999999999999 48999999999999999987 799999999999999999
Q ss_pred HhhCCCCeEEEEeccccch--hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEE
Q psy2302 80 QNINPDVTIEVHNFNITLL--RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQ 157 (292)
Q Consensus 80 ~~~np~v~v~~~~~~i~~~--~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~ 157 (292)
+.+||+++|+++..++... .-|.+ .++...|+|..|.||..+|.++.+-|+-+.+|++.+|+.| ..|..+
T Consensus 499 ~~mNp~l~I~a~~~rvgpeTE~If~D------~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlG--TKGntQ 570 (1013)
T KOG2012|consen 499 RGMNPDLNIIALQNRVGPETEHIFND------EFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLG--TKGNTQ 570 (1013)
T ss_pred HhcCCCceeeehhhccCcccccccch------hHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcC--Ccccee
Confidence 9999999999999888531 22222 2357899999999999999999999999999999999986 689999
Q ss_pred eecCCCCCccCC
Q psy2302 158 LIIPGESACFAC 169 (292)
Q Consensus 158 ~~~p~~t~C~~C 169 (292)
++.|.-|-.|.=
T Consensus 571 VvvPhlTEsY~S 582 (1013)
T KOG2012|consen 571 VVVPHLTESYGS 582 (1013)
T ss_pred EEeccccccccc
Confidence 999998877753
No 50
>KOG2337|consensus
Probab=99.84 E-value=1.3e-20 Score=177.38 Aligned_cols=240 Identities=19% Similarity=0.294 Sum_probs=161.9
Q ss_pred HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCC-ccCcCCCC---ChHHHHHHHHHHhhCCCCeE
Q psy2302 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL-FFQPDQCG---LSKVEAARITLQNINPDVTI 88 (292)
Q Consensus 13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~-~~~~~diG---~~Ka~a~~~~l~~~np~v~v 88 (292)
+++.+.|++++|+|.+||.||++|...||+|||++|..+|+.+|-.|| +|+.+|.+ ++||++|+++|++++|.++.
T Consensus 336 d~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~a 415 (669)
T KOG2337|consen 336 DIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEA 415 (669)
T ss_pred hhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccccc
Confidence 789999999999999999999999999999999999999999999997 47877764 99999999999999999999
Q ss_pred EEEecccc-------ch--hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccccee----EE-
Q psy2302 89 EVHNFNIT-------LL--RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAV----SG- 154 (292)
Q Consensus 89 ~~~~~~i~-------~~--~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~----~G- 154 (292)
+.+...|. .. +.....++.....++..|+|+..+|+.+.|++-.-.+..+++..|++...-..+ .|
T Consensus 416 tG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaALGFDsylVMRHG~ 495 (669)
T KOG2337|consen 416 TGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAALGFDSYLVMRHGT 495 (669)
T ss_pred cceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeeecccceeEEEecCC
Confidence 88876552 10 111111111112237899999999999999998888988998888876531111 01
Q ss_pred ---------EEEe--ecCC-CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCC-----
Q psy2302 155 ---------HIQL--IIPG-ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFG----- 217 (292)
Q Consensus 155 ---------~v~~--~~p~-~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~----- 217 (292)
+-.- .+|+ +-+||.|-.--.+......+++.+. |+.+-|. .+++|+-.|.|.+--++.++
T Consensus 496 ~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQq--CTVtRPG-~a~IA~alAVELlvslLQhP~~~a~ 572 (669)
T KOG2337|consen 496 GRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQ--CTVTRPG-VANIASALAVELLVSLLQHPLGYAQ 572 (669)
T ss_pred CCcccccccccccccccCcccceeEeEcceecCCCcccccchhhe--eeccCCc-hhHHHHHHHHHHHHHHHhCcccccc
Confidence 1111 1232 5689999864333333344555443 4433344 44555555667777776654
Q ss_pred C---------CCeeEEE-----eCCCCCeeeeec--cCCCCCCCccccchh-hhccc
Q psy2302 218 E---------VSWYLGY-----SALTDFFPKMKL--KPNPSCDDSYCVQRQ-KEFNA 257 (292)
Q Consensus 218 ~---------~~~~~~~-----d~~~~~~~~~~l--~~~p~C~~~~C~~~~-~~~~~ 257 (292)
. +...++. .++-.+|..+.+ ++-++|. .|+... .||.+
T Consensus 573 ~~s~~~~~n~~~tvLG~lPHQIRGfL~nFs~i~~~~~af~qC~--ACS~~Vi~ey~~ 627 (669)
T KOG2337|consen 573 NSSEETEENEPTTVLGILPHQIRGFLHNFSNILPSTQAFDQCT--ACSEAVINEYKR 627 (669)
T ss_pred CCCcccccCCCCcccccccHHHHHhhhhhhhhccccccccccc--hhhHHHHHHHHH
Confidence 1 1122221 122223443333 5588999 799865 33444
No 51
>KOG2012|consensus
Probab=99.76 E-value=2.3e-18 Score=169.50 Aligned_cols=131 Identities=21% Similarity=0.362 Sum_probs=120.3
Q ss_pred CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCC
Q psy2302 6 MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINP 84 (292)
Q Consensus 6 ~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np 84 (292)
+|- +++++|..++|+|.|+||+|-+||+||..+||+++||.|...+..++|..|| ++++|||++|+++..++|+++|+
T Consensus 27 lG~-eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~ 105 (1013)
T KOG2012|consen 27 LGH-EAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNN 105 (1013)
T ss_pred ccH-HHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhc
Confidence 566 8999999999999999999999999999999999999999999999999988 59999999999999999999999
Q ss_pred CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
.|.|..+...++. + ++ ++|++||.+-...+....||++|+++++.+|.+.+.|
T Consensus 106 yV~V~v~t~~~~~-e----~L-------~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RG 158 (1013)
T KOG2012|consen 106 YVPVVVLTGPLTE-E----FL-------SDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRG 158 (1013)
T ss_pred ceeeEEecCcccH-H----HH-------hCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccch
Confidence 9999999877653 2 22 7899999998889999999999999999999776653
No 52
>KOG2016|consensus
Probab=99.75 E-value=1.9e-18 Score=160.37 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=134.5
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQN 81 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~ 81 (292)
||.||. .+|..|..++|+++|||++|++++++|+..|||.|+++|+-.|+.++++.+|| ..+++|++||.+..+.|++
T Consensus 14 lRlwge-~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~Lqe 92 (523)
T KOG2016|consen 14 LRLWGE-EGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQE 92 (523)
T ss_pred HHHHHH-HhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHH
Confidence 678999 99999999999999999999999999999999999999999999999999775 7899999999999999999
Q ss_pred hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302 82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP 161 (292)
Q Consensus 82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p 161 (292)
+||+|.-.... ++.+.++.+.+.++..+++|+.+--+..+...+.+.|+++++|+++...+| +.|.+.+.+.
T Consensus 93 LN~~V~~~~ve------e~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~G--l~G~iRI~ik 164 (523)
T KOG2016|consen 93 LNPSVSGSFVE------ESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYG--LAGTIRISIK 164 (523)
T ss_pred hChhhhcCccc------cChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeec--ceEEEEEEee
Confidence 99999866554 344456677777889999999988888888999999999999999998874 8898877654
No 53
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.65 E-value=1e-16 Score=120.01 Aligned_cols=81 Identities=30% Similarity=0.560 Sum_probs=56.1
Q ss_pred CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeeccC
Q psy2302 162 GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKLKP 239 (292)
Q Consensus 162 ~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l~~ 239 (292)
|+++||+|+||.. .. ...+|...|+ ++++++++|+++|+|+||+|+|.+++ ++++.||+++++|+++++.+
T Consensus 1 g~~pC~rCl~p~~--~~-~~~~C~~~GV----lg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~k 73 (84)
T PF05237_consen 1 GKTPCYRCLFPEP--PE-SAPTCAEAGV----LGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIKK 73 (84)
T ss_dssp -T---HHHHHTTS--S---TTSSSTS-B-----HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE---
T ss_pred CCCceehhcCCCC--Cc-cCCCcccccc----ccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecCC
Confidence 4689999999976 11 3455677776 99999999999999999999998776 79999999999999999999
Q ss_pred CCCCCCccccch
Q psy2302 240 NPSCDDSYCVQR 251 (292)
Q Consensus 240 ~p~C~~~~C~~~ 251 (292)
+|+|+ +|+++
T Consensus 74 ~~~C~--~C~~~ 83 (84)
T PF05237_consen 74 NPDCP--VCGPK 83 (84)
T ss_dssp -TT-T--TT---
T ss_pred CccCc--CcCcC
Confidence 99999 89964
No 54
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.81 E-value=2e-08 Score=86.60 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=72.3
Q ss_pred HHHHHHhcCcEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302 10 ENYEHIRTLTVIVVGVGGVGSV-TAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI 88 (292)
Q Consensus 10 ~~q~~L~~~~V~vvG~GglGs~-va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v 88 (292)
++|++|++++|.|+|.|+.|+. ++..|+.+|++.+.
T Consensus 98 ~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------------------------------- 134 (193)
T TIGR03882 98 AALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------------------------------- 134 (193)
T ss_pred HHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------------------------------------------
Confidence 5789999999999999999999 99999999999764
Q ss_pred EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCccC
Q psy2302 89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFA 168 (292)
Q Consensus 89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~ 168 (292)
++ .+.++|+........-..+|+.+.+.++||+.....+ +.....+++.|+.|+||+
T Consensus 135 -------~~---------------a~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~-~~~~~gp~~~p~~~~c~~ 191 (193)
T TIGR03882 135 -------SE---------------ADLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGG-VQPWIGPLFKPGKTGCWH 191 (193)
T ss_pred -------CC---------------CCEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCC-ceEEECCeecCCCCcccc
Confidence 00 1233443332222334568999999999999988865 233344788999999999
Q ss_pred CC
Q psy2302 169 CA 170 (292)
Q Consensus 169 C~ 170 (292)
|+
T Consensus 192 c~ 193 (193)
T TIGR03882 192 CL 193 (193)
T ss_pred cC
Confidence 96
No 55
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.72 E-value=3.1e-07 Score=75.67 Aligned_cols=117 Identities=23% Similarity=0.283 Sum_probs=95.7
Q ss_pred cCcEEEEcCChHHHHHHHHHH---HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLT---RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La---~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
...|.++|||.+|--++..|. |.|..+|.++|+.+|++.++-...+ -..+|.+|++.++ +|.+..+.-+++++..
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~-Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~pE 95 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL-GAKVGEYKVDFIK-RLGRVHFGRRVEAFPE 95 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh-CCCcchhHHHHHH-HhCcCCCCceeecccc
Confidence 456999999999999999998 7789999999999999998753222 3579999999886 5777788889999999
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc---CCHHHHHHHHHHHHHhCCceeec
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV---DNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~---d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
.|+. +|+..+ .-|+|+.|. |+.++...|.++|++.|+..|..
T Consensus 96 ~it~-dNlhll---------~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 96 NITK-DNLHLL---------KGDVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred cccc-cchhhh---------cCCEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 9987 777654 238777664 67788888999999999987754
No 56
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.50 E-value=1.1e-06 Score=83.16 Aligned_cols=101 Identities=27% Similarity=0.418 Sum_probs=77.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
++|+|+|+|++|+.+|..|++.|.+++++.|... .-.+++...... ++++..-++.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~----------------------~~~~~i~~~~~~-~v~~~~vD~~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK----------------------EKCARIAELIGG-KVEALQVDAAD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH----------------------HHHHHHHhhccc-cceeEEecccC
Confidence 5899999999999999999999999999988432 111222222211 67777777777
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
.+.+.++| .++|+||++...+-.. .+-++|.+.|+++++....+
T Consensus 59 ~~al~~li-------~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 59 VDALVALI-------KDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred hHHHHHHH-------hcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 67777877 6789999999887665 67889999999999886654
No 57
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.22 E-value=6.1e-06 Score=75.43 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=60.6
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
++.++|+|+|+||.|..++..|+..|+++|+|+|.+. .|++.+++.+.+..+.+.+...
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~------------------~ka~~la~~l~~~~~~~~~~~~--- 183 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP------------------ARAAALADELNARFPAARATAG--- 183 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH------------------HHHHHHHHHHHhhCCCeEEEec---
Confidence 5678999999999999999999999999999998653 5899999998887776554322
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+.+ .++|+||+||.
T Consensus 184 ----~~~~~~~-------~~aDiVInaTp 201 (284)
T PRK12549 184 ----SDLAAAL-------AAADGLVHATP 201 (284)
T ss_pred ----cchHhhh-------CCCCEEEECCc
Confidence 2222222 67999999974
No 58
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.18 E-value=1e-05 Score=65.73 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=58.2
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|++++|+|+|+||.|..++..|...|+.+|+++..+. .|++.+++.+ +...+.....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~------------------~ra~~l~~~~----~~~~~~~~~~ 66 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP------------------ERAEALAEEF----GGVNIEAIPL 66 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH------------------HHHHHHHHHH----TGCSEEEEEG
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH------------------HHHHHHHHHc----CccccceeeH
Confidence 68999999999999999999999999999999976321 3676666665 3444444432
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~ 126 (292)
+++.+.+ .++|+||.||....
T Consensus 67 -----~~~~~~~-------~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 67 -----EDLEEAL-------QEADIVINATPSGM 87 (135)
T ss_dssp -----GGHCHHH-------HTESEEEE-SSTTS
T ss_pred -----HHHHHHH-------hhCCeEEEecCCCC
Confidence 3333333 58999999998653
No 59
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.07 E-value=3.4e-05 Score=67.04 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|++++|+|||.|.+|...++.|...| .++++++++. . +.+.++.+.-.+.....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~------------------~~l~~l~~~~~i~~~~~ 61 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T------------------ENLVKLVEEGKIRWKQK 61 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C------------------HHHHHHHhCCCEEEEec
Confidence 578999999999999999999999999 6899997542 1 11112211222333332
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF 143 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i 143 (292)
.... .. +.++|+||.||++.+.-..|.+.| +.++++-
T Consensus 62 ~~~~-~~-----------l~~adlViaaT~d~elN~~i~~~a-~~~~lvn 98 (202)
T PRK06718 62 EFEP-SD-----------IVDAFLVIAATNDPRVNEQVKEDL-PENALFN 98 (202)
T ss_pred CCCh-hh-----------cCCceEEEEcCCCHHHHHHHHHHH-HhCCcEE
Confidence 2221 11 268999999999999989999999 5566543
No 60
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.95 E-value=5.6e-05 Score=71.81 Aligned_cols=96 Identities=24% Similarity=0.412 Sum_probs=68.2
Q ss_pred EEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302 20 VIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL 98 (292)
Q Consensus 20 V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~ 98 (292)
|+|+|+|.+|+.+++.|++.+- .++++.|.+. .|++.+.+.+ ...+++....++.+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~------------------~~~~~~~~~~----~~~~~~~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP------------------EKAERLAEKL----LGDRVEAVQVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH------------------HHHHHHHT------TTTTEEEEE--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH------------------HHHHHHHhhc----cccceeEEEEecCCH
Confidence 7899999999999999999884 4999998655 1333333322 345677777777776
Q ss_pred hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
+.+.+++ .++|+||+|...+ ....+-++|.+.|+++++.
T Consensus 59 ~~l~~~~-------~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 59 ESLAELL-------RGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHH-------TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHH-------hcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 7777777 7899999999887 5567889999999999984
No 61
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.93 E-value=0.0001 Score=64.27 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=69.5
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|++++|+|||.|.+|..-++.|...|. ++++++++.- +. +. .+.+ .-+++.+..
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-----------------~~---l~-~l~~---~~~i~~~~~ 60 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-----------------SE---LT-LLAE---QGGITWLAR 60 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-----------------HH---HH-HHHH---cCCEEEEeC
Confidence 4788999999999999999999999995 7999997531 01 11 1111 124555554
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
.... +. + .++++||.|+++.+.-..|-..|.+.++++-.+
T Consensus 61 ~~~~-~d----l-------~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 61 CFDA-DI----L-------EGAFLVIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred CCCH-HH----h-------CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 4332 22 2 689999999999988889999999999987433
No 62
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.86 E-value=2.6e-05 Score=60.36 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=63.6
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|++++|+|||.|.+|..-++.|..+| .+++++.++. +. .+ ..+++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~--------------------~~-------~~i~~--~~~ 52 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF--------------------SE-------GLIQL--IRR 52 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH--------------------HH-------TSCEE--EES
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh--------------------hh-------hHHHH--Hhh
Confidence 578999999999999999999999999 7899999875 10 00 12222 222
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG 146 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~ 146 (292)
.+ ++. +.++++|+.|+++......|-+.|+++++|+-.+.
T Consensus 53 ~~------~~~-------l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 53 EF------EED-------LDGADLVFAATDDPELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp S-------GGG-------CTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred hH------HHH-------HhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence 22 111 26899999999999999999999999999875443
No 63
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.80 E-value=9.4e-05 Score=67.79 Aligned_cols=85 Identities=14% Similarity=0.258 Sum_probs=58.9
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+++++|+|+|+||+|.+++..|+..|+.++++++.+.- ...|++.+++.+.+..+.+.+... .
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~---------------~~~~a~~l~~~l~~~~~~~~~~~~--d 186 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD---------------FYERAEQTAEKIKQEVPECIVNVY--D 186 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch---------------HHHHHHHHHHHHhhcCCCceeEEe--c
Confidence 56789999999999999999999999999999875320 013666677777665555444322 2
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+.+.+.+ ..+|+||+||.
T Consensus 187 ~~~~~~~~~~~-------~~~DilINaTp 208 (289)
T PRK12548 187 LNDTEKLKAEI-------ASSDILVNATL 208 (289)
T ss_pred hhhhhHHHhhh-------ccCCEEEEeCC
Confidence 33223343333 56899999984
No 64
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.79 E-value=0.0002 Score=59.80 Aligned_cols=85 Identities=13% Similarity=0.257 Sum_probs=61.3
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|++++|+|||.|.+|...++.|...|. ++++|+++..+ .+.++ +. ++....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~------------------------~l~~l-~~--i~~~~~ 61 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK------------------------EMKEL-PY--ITWKQK 61 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH------------------------HHHhc-cC--cEEEec
Confidence 6889999999999999999999999995 78898765421 11111 12 222232
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL 138 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~ 138 (292)
.+.. .+ +.++|+||.+||+.+.-..+...|.++
T Consensus 62 ~~~~-~d-----------l~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 62 TFSN-DD-----------IKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ccCh-hc-----------CCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 2221 11 268999999999999988888888774
No 65
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.72 E-value=0.00019 Score=65.61 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=56.2
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+++++|+|+|+||.|.+++..|+..|+.+|+|+|.+. .|++.+++++....+...+....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~------------------~ka~~La~~~~~~~~~~~~~~~~-- 184 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT------------------SRAQALADVINNAVGREAVVGVD-- 184 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH------------------HHHHHHHHHHhhccCcceEEecC--
Confidence 5578999999999999999999999999999987542 38888888776544432222211
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++...+ ..+|+||+||.
T Consensus 185 ---~~~~~~~~-------~~~divINaTp 203 (283)
T PRK14027 185 ---ARGIEDVI-------AAADGVVNATP 203 (283)
T ss_pred ---HhHHHHHH-------hhcCEEEEcCC
Confidence 11222222 46999999985
No 66
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.59 E-value=0.00095 Score=58.80 Aligned_cols=95 Identities=11% Similarity=0.209 Sum_probs=68.9
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.+++++|+|||.|.++..=+..|...| .++++|-++.-+ .+.++...-+++....
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~------------------------el~~l~~~~~i~~~~r 76 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK------------------------EFLDLKKYGNLKLIKG 76 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH------------------------HHHHHHhCCCEEEEeC
Confidence 456889999999999999999999998 679998876421 1111111122444444
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
.... +++ .++++||.|||+.+.-..|.+.|.+.++++..+
T Consensus 77 ~~~~-~dl-----------~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 77 NYDK-EFI-----------KDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred CCCh-HHh-----------CCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 4432 222 689999999999999999999999998876544
No 67
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.58 E-value=0.00023 Score=65.23 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=56.0
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+++++|+|+|+||.+.+++..|+..|+.+|+|++.+. -...|++.+++++....+ ..+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~---------------~~~~ka~~la~~~~~~~~-~~~~~~~-- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD---------------EFFDKALAFAQRVNENTD-CVVTVTD-- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc---------------cHHHHHHHHHHHhhhccC-ceEEEec--
Confidence 5778999999999999999999999999999987431 013478888777754332 2222221
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+...+.+.+. ..++|+||+||.
T Consensus 184 ~~~~~~l~~~-------~~~aDivINaTp 205 (288)
T PRK12749 184 LADQQAFAEA-------LASADILTNGTK 205 (288)
T ss_pred hhhhhhhhhh-------cccCCEEEECCC
Confidence 1110112221 257999999984
No 68
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00092 Score=59.06 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=67.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHh-hCCCCeEEEEecccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQN-INPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~-~np~v~v~~~~~~i~ 96 (292)
++++|+|+|.+|..+|+.|+..|- .+++||.|. +++.+ ........++...-+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~-------------------------~~~~~~~~~~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE-------------------------ERVEEFLADELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH-------------------------HHHHHHhhhhcceEEEEecCC
Confidence 479999999999999999999985 477777665 22222 111233445555545
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHH-hCCceeecCc
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ-LGQTWFESGV 147 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~-~~~p~i~~~~ 147 (292)
+.+-+.+. -..++|+++.++++...-..+-..+.+ +|+|.+.+.+
T Consensus 55 ~~~~L~~a------gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 55 DEDVLEEA------GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred CHHHHHhc------CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 43444332 237899999999998777777776665 7888876644
No 69
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.42 E-value=0.00048 Score=62.90 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=53.4
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+++++|+|+|+||.|..++..|+..|+.+++|++.+. .|++.+++++.... . +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~------------------~ka~~La~~~~~~~-~--~~~~~-- 179 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP------------------DKLSRLVDLGVQVG-V--ITRLE-- 179 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH------------------HHHHHHHHHhhhcC-c--ceecc--
Confidence 4678999999999999999999999999999986431 37777776654321 1 11111
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
..+++...+ .++|+||+||.-
T Consensus 180 --~~~~~~~~~-------~~~DiVInaTp~ 200 (282)
T TIGR01809 180 --GDSGGLAIE-------KAAEVLVSTVPA 200 (282)
T ss_pred --chhhhhhcc-------cCCCEEEECCCC
Confidence 001222222 579999999864
No 70
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.34 E-value=0.0012 Score=57.77 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=65.6
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|++++|+|||.|.+|..=++.|..+| .+++++-++. + +.... +.+.+ ++.....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-~----------------~el~~----~~~~~---~i~~~~~ 63 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-E----------------PELKA----LIEEG---KIKWIER 63 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-c----------------HHHHH----HHHhc---Ccchhhc
Confidence 578999999999999999999999999 5677776655 1 11111 11111 1222222
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceee
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFE 144 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~ 144 (292)
.... + + +.++++||.|||+...-..|.+.|.++++|.-.
T Consensus 64 ~~~~-~---~--------~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 64 EFDA-E---D--------LDDAFLVIAATDDEELNERIAKAARERRILVNV 102 (210)
T ss_pred ccCh-h---h--------hcCceEEEEeCCCHHHHHHHHHHHHHhCCceec
Confidence 2111 1 1 146999999999999999999999999987643
No 71
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.33 E-value=0.00063 Score=64.96 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=57.7
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|++++|+|||+|-.|.-+|++|...|+.+|++ +||.+ -|+.-+++++. .++..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------aNRT~--------erA~~La~~~~-----~~~~~--- 228 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------ANRTL--------ERAEELAKKLG-----AEAVA--- 228 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------EcCCH--------HHHHHHHHHhC-----Ceeec---
Confidence 478999999999999999999999999999999 55642 36666666654 22221
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~ 126 (292)
.+++.+.+ .++|+||.+|..+.
T Consensus 229 ----l~el~~~l-------~~~DvVissTsa~~ 250 (414)
T COG0373 229 ----LEELLEAL-------AEADVVISSTSAPH 250 (414)
T ss_pred ----HHHHHHhh-------hhCCEEEEecCCCc
Confidence 24555554 78999999987654
No 72
>PRK06197 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.002 Score=59.02 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=66.9
Q ss_pred ccCChHHHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302 4 KRMGIVENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI 82 (292)
Q Consensus 4 ~~~G~~~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~ 82 (292)
..|+. .....+++++|+|.|+ |++|.++++.|++.|. ++.+++.+. .+.+.+.+.+.+.
T Consensus 4 ~~~~~-~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~------------------~~~~~~~~~l~~~ 63 (306)
T PRK06197 4 TKWTA-ADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNL------------------DKGKAAAARITAA 63 (306)
T ss_pred CCCCc-cccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHh
Confidence 34555 4445678899999986 8999999999999997 577766432 2444455556655
Q ss_pred CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.+..++..+..++++.+.+..++++....+.+.|+||.+.
T Consensus 64 ~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nA 103 (306)
T PRK06197 64 TPGADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNA 103 (306)
T ss_pred CCCCceEEEECCCCCHHHHHHHHHHHHhhCCCCCEEEECC
Confidence 5556677777777776666655443322345788888765
No 73
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0017 Score=59.27 Aligned_cols=76 Identities=14% Similarity=0.268 Sum_probs=54.6
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
+.++|+|+|+||.+.+++..|+..|+.+|+|+.... .|++.+++++.+..+.+......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~------------------~ra~~La~~~~~~~~~~~~~~~~--- 183 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR------------------ERAEELADLFGELGAAVEAAALA--- 183 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH------------------HHHHHHHHHhhhccccccccccc---
Confidence 468999999999999999999999999999976432 47888888877776522221111
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
.... ...+|+||+||.-
T Consensus 184 ----~~~~--------~~~~dliINaTp~ 200 (283)
T COG0169 184 ----DLEG--------LEEADLLINATPV 200 (283)
T ss_pred ----cccc--------ccccCEEEECCCC
Confidence 1110 0259999999853
No 74
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.13 E-value=0.0024 Score=59.06 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=57.1
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+.+.+|+|+|+|.+|..+++.|...|+.+++++|.+. .|+..+++.+. . .+ ..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~------------------~ra~~la~~~g----~-~~--~~-- 228 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY------------------ERAEELAKELG----G-NA--VP-- 228 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH------------------HHHHHHHHHcC----C-eE--Ee--
Confidence 5789999999999999999999998999999988543 24444444331 1 11 11
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHH
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMA 134 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~ 134 (292)
.+++.+.+ .++|+||.|+..+.....+.+.
T Consensus 229 ---~~~~~~~l-------~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 229 ---LDELLELL-------NEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred ---HHHHHHHH-------hcCCEEEECCCCCchHHHHHHH
Confidence 13344444 5799999999987663333433
No 75
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.11 E-value=0.0021 Score=55.17 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=56.7
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|+|. |++|..++..|+..| .++++++.+ ..|++.+.+.+.+.. ..++...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~------------------~~~~~~l~~~l~~~~-~~~~~~~- 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD------------------LERAQKAADSLRARF-GEGVGAV- 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC------------------HHHHHHHHHHHHhhc-CCcEEEe-
Confidence 567899999996 999999999999988 488887643 235666666665332 3333332
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~ 126 (292)
...+.+++.+.+ .++|+||.++....
T Consensus 84 -~~~~~~~~~~~~-------~~~diVi~at~~g~ 109 (194)
T cd01078 84 -ETSDDAARAAAI-------KGADVVFAAGAAGV 109 (194)
T ss_pred -eCCCHHHHHHHH-------hcCCEEEECCCCCc
Confidence 222234444444 68999999987544
No 76
>PRK09242 tropinone reductase; Provisional
Probab=97.09 E-value=0.0039 Score=55.24 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=66.6
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++++|.|+ |++|..+++.|+..|. ++++++.+. .+.+.+.+.+...+|..++..+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~ 66 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA------------------DALAQARDELAEEFPEREVHGLA 66 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhhCCCCeEEEEE
Confidence 367889999986 7999999999999997 577776431 24455666777777778888888
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|+||.+..
T Consensus 67 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 67 ADVSDDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 8888766666555433333467899998874
No 77
>KOG4169|consensus
Probab=97.08 E-value=0.0015 Score=57.37 Aligned_cols=88 Identities=27% Similarity=0.374 Sum_probs=67.9
Q ss_pred HhcCcEEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVV-GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vv-G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++++++ |+||+|-.+++.|..-|+..+.+.|.-. | -.+..+|+++||.+++..+..
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n----------------~~a~akL~ai~p~~~v~F~~~ 62 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N----------------PEAIAKLQAINPSVSVIFIKC 62 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C----------------HHHHHHHhccCCCceEEEEEe
Confidence 456777766 8999999999999999999988866321 2 234567999999999999999
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+++...++++.+++--..+...|++|+-.
T Consensus 63 DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 63 DVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred ccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 99876666655544444567899999764
No 78
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.06 E-value=0.0035 Score=66.43 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=60.6
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCC-C------------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGI-G------------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI 82 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gv-g------------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~ 82 (292)
+.++|+|+|+|.+|..++..|++.+- . .+++.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~------------------~~~a~~la~~---- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY------------------LKDAKETVEG---- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC------------------HHHHHHHHHh----
Confidence 47799999999999999999998642 2 24444432 2344433332
Q ss_pred CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
.|.++ +...++++.+.+.+.+ .++|+||.|+... .-..+.+.|.++|+.++..
T Consensus 626 ~~~~~--~v~lDv~D~e~L~~~v-------~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 626 IENAE--AVQLDVSDSESLLKYV-------SQVDVVISLLPAS-CHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred cCCCc--eEEeecCCHHHHHHhh-------cCCCEEEECCCch-hhHHHHHHHHHcCCCEEEC
Confidence 34433 2233344445555544 5799999998763 3345666677777666544
No 79
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.06 E-value=0.0021 Score=58.54 Aligned_cols=37 Identities=14% Similarity=0.411 Sum_probs=33.4
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.+++++|+|+|+||+|..++..|...|+.++++++.+
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3678899999999999999999999999999998753
No 80
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.04 E-value=0.0035 Score=57.86 Aligned_cols=33 Identities=39% Similarity=0.630 Sum_probs=30.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D 50 (292)
+||.|+|+|++|+.+|..|+..|+. +|.|+|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3799999999999999999999985 89999964
No 81
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.01 E-value=0.0049 Score=53.40 Aligned_cols=113 Identities=21% Similarity=0.194 Sum_probs=62.8
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE-Ee
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV-HN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~-~~ 92 (292)
.|++++|+|+|.|.+|..+++.|...|. +++++|.+.-. + +.+. +..|...+.. +.+....-++-+.. ..
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~---~--~~~~-~~~g~~~v~~--~~l~~~~~Dv~vp~A~~ 95 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEA---V--ARAA-ELFGATVVAP--EEIYSVDADVFAPCALG 95 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---H--HHHH-HHcCCEEEcc--hhhccccCCEEEecccc
Confidence 5788999999999999999999999997 67788865310 0 0000 0001100000 11111122222211 11
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
.-++. +++.++ +.++|+....++-+...-.+...+.|+.|+..
T Consensus 96 ~~I~~-~~~~~l---------~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd 138 (200)
T cd01075 96 GVIND-DTIPQL---------KAKAIAGAANNQLADPRHGQMLHERGILYAPD 138 (200)
T ss_pred cccCH-HHHHHc---------CCCEEEECCcCccCCHhHHHHHHHCCCEEeCc
Confidence 22332 444332 57888888777544334456677888887763
No 82
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.00 E-value=0.0023 Score=61.57 Aligned_cols=77 Identities=17% Similarity=0.362 Sum_probs=54.5
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.+.+++|+|+|+|+.|..++.+|+..|+.+|+++... ..|++.+++.+. ...+..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt------------------~~ra~~La~~~~----~~~~~~--- 232 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT------------------IEKAQKITSAFR----NASAHY--- 232 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC------------------HHHHHHHHHHhc----CCeEec---
Confidence 4678999999999999999999999999999995432 125555555432 122111
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~ 126 (292)
.+++.+.+ .++|+||.||..+.
T Consensus 233 ----~~~l~~~l-------~~aDiVI~aT~a~~ 254 (414)
T PRK13940 233 ----LSELPQLI-------KKADIIIAAVNVLE 254 (414)
T ss_pred ----HHHHHHHh-------ccCCEEEECcCCCC
Confidence 13444444 68999999998754
No 83
>PRK07062 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.0056 Score=54.48 Aligned_cols=91 Identities=20% Similarity=0.313 Sum_probs=66.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++++|.|+ |++|.++++.|++.|.. +.+++.+. .|.+.+.+.+.+..+..++..+.
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 467889999987 68999999999999974 77766432 24455566677777777788888
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.++.....+.+.|++|.+..
T Consensus 66 ~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 66 CDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 8888777776655443333467899998764
No 84
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.99 E-value=0.0038 Score=49.85 Aligned_cols=94 Identities=18% Similarity=0.099 Sum_probs=59.1
Q ss_pred cEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
||+|+|+ |..|..+++.+.. .|+.=...+|... .-+--.|+| +.+......+.+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~--------~~~~g~d~g--------~~~~~~~~~~~v~------- 58 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP--------SAKVGKDVG--------ELAGIGPLGVPVT------- 58 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT--------STTTTSBCH--------HHCTSST-SSBEB-------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------cccccchhh--------hhhCcCCcccccc-------
Confidence 7999999 9999999999998 6666566666543 011112332 1111111122221
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
+++++.+ ..+|+|||.+ +++.-...-++|.++++|++.+
T Consensus 59 --~~l~~~~-------~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG 97 (124)
T PF01113_consen 59 --DDLEELL-------EEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG 97 (124)
T ss_dssp --S-HHHHT-------TH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE
T ss_pred --hhHHHhc-------ccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE
Confidence 4555554 5699999999 7777777888999999999865
No 85
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.97 E-value=0.0065 Score=59.27 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=68.9
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|++++|+|||.|.++..=++.|..+|. ++++|-++.- +.++++...-+++....
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~------------------------~~~~~l~~~~~i~~~~~ 63 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI------------------------PQFTAWADAGMLTLVEG 63 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC------------------------HHHHHHHhCCCEEEEeC
Confidence 6789999999999999999999999995 7888765421 11222211224555554
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
.... ++ + .++++||.|||+.+.-..|.+.|.+.++++-.+
T Consensus 64 ~~~~-~d----l-------~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 64 PFDE-SL----L-------DTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred CCCh-HH----h-------CCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence 4432 22 2 689999999999999999999999999865433
No 86
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.94 E-value=0.0031 Score=51.63 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=32.0
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++++|+|+|+|++|..+++.|...|..+++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 567999999999999999999999987789988754
No 87
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.93 E-value=0.0037 Score=51.89 Aligned_cols=98 Identities=20% Similarity=0.335 Sum_probs=59.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH--hhCCCCeEEEEecccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ--NINPDVTIEVHNFNIT 96 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~--~~np~v~v~~~~~~i~ 96 (292)
||+|+|+|..|+++|..|+..| .+++|.+.|.= .++.+.+.=. ...|++++.. +..++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~t 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE------------------QIEEINETRQNPKYLPGIKLPE-NIKAT 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH------------------HHHHHHHHTSETTTSTTSBEET-TEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH------------------HHHHHHHhCCCCCCCCCcccCc-ccccc
Confidence 6999999999999999999999 67888776541 1222221100 1123333322 11222
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHH--HhCCceeec
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACN--QLGQTWFES 145 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~--~~~~p~i~~ 145 (292)
.++++.+ ++.|+||.++.....+..+.+... +.+.+++..
T Consensus 61 --~dl~~a~-------~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 61 --TDLEEAL-------EDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp --SSHHHHH-------TT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred --cCHHHHh-------CcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 4555555 789999999999988877776654 445555543
No 88
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.91 E-value=0.0025 Score=53.78 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcCChH-HHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVGGV-GSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~Ggl-Gs~va~~La~~Gvg~i~lvD~ 49 (292)
.|++++|+|+|.|.. |..++++|.+.|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478999999999985 8889999999998 6888773
No 89
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.006 Score=54.14 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=64.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+|++++|+|.|+ |++|.++++.|+..|. ++.++|.+ ..+.+.+.+.+.+.++..++..+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 64 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD------------------AALAERAAAAIARDVAGARVLAVP 64 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC------------------HHHHHHHHHHHHhccCCceEEEEE
Confidence 467889999975 7999999999999997 47776632 235555666666655566777788
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|++|.+..
T Consensus 65 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 65 ADVTDAASVAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 8887766666555433223457899988764
No 90
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.90 E-value=0.0049 Score=50.39 Aligned_cols=75 Identities=21% Similarity=0.423 Sum_probs=51.9
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCC--eEEEEec
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDV--TIEVHNF 93 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v--~v~~~~~ 93 (292)
.||.|+|+ |.+|+.+|..|...|+. +|.|+|.+. .|++..+.-|....+.. .+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~------------------~~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE------------------DKAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc------------------ccceeeehhhhhhhhhccccccccc-
Confidence 38999999 99999999999999974 599999643 25555555566554333 222222
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
.+.+. +.++|+||.+...
T Consensus 62 --~~~~~-----------~~~aDivvitag~ 79 (141)
T PF00056_consen 62 --GDYEA-----------LKDADIVVITAGV 79 (141)
T ss_dssp --SSGGG-----------GTTESEEEETTST
T ss_pred --ccccc-----------cccccEEEEeccc
Confidence 11122 2789999998865
No 91
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.83 E-value=0.001 Score=58.81 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=35.1
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D 50 (292)
.+++.||+|+|+|+.|..++..|...|+. +|+++|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 58889999999999999999999999999 99999976
No 92
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.82 E-value=0.0078 Score=55.86 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=51.4
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCC-eEEEEec
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDV-TIEVHNF 93 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v-~v~~~~~ 93 (292)
+..||.|+|+|.+|+.+|..|+..|+. +|.|+|-+ +.|+...+.-|+...|.. ++....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~------------------~~~~~g~~~Dl~~~~~~~~~~~i~~- 65 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN------------------KEKAEGDAMDLSHAVPFTSPTKIYA- 65 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC------------------CchhHHHHHHHHhhccccCCeEEEe-
Confidence 356999999999999999999999985 79999852 234445555555554322 121111
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
.+++++ .++|+||.+...
T Consensus 66 -----~~~~~~--------~~adivIitag~ 83 (315)
T PRK00066 66 -----GDYSDC--------KDADLVVITAGA 83 (315)
T ss_pred -----CCHHHh--------CCCCEEEEecCC
Confidence 233332 689998887653
No 93
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.80 E-value=0.0032 Score=60.69 Aligned_cols=37 Identities=24% Similarity=0.592 Sum_probs=33.6
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.+.+++|+|+|+|.+|..+++.|...|+.+++++|.+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3678999999999999999999999999999998753
No 94
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.0085 Score=53.27 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=60.8
Q ss_pred HHhcCcEEEEcC-C-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 14 HIRTLTVIVVGV-G-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 14 ~L~~~~V~vvG~-G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
.+++++++|.|. | |+|..+++.|+..|.. +.++|.+ ..+.+...+.+++..+..++..+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIH------------------ERRLGETADELAAELGLGRVEAV 74 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCC------------------HHHHHHHHHHHHHhcCCceEEEE
Confidence 456789999997 5 7999999999999975 7776532 12444455556554444456667
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+...++.....+.+.|+||.+..
T Consensus 75 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 75 VCDVTSEAQVDALIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 77777666666554432222357899888874
No 95
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.72 E-value=0.011 Score=54.82 Aligned_cols=74 Identities=15% Similarity=0.324 Sum_probs=50.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC---CeEEEEecc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD---VTIEVHNFN 94 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~---v~v~~~~~~ 94 (292)
||.|||+|.+|+.+|..|+..|+ ++|.|+|-. +.|++.-+.-|+...+. ..++.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~------------------~~~a~g~a~DL~~~~~~~~~~~~~i~~-- 60 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN------------------EGVAEGEALDFHHATALTYSTNTKIRA-- 60 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC------------------cchhhHHHHHHHhhhccCCCCCEEEEE--
Confidence 69999999999999999999897 689999842 23444444555554331 1222222
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
.+++++ .++|+||.+...
T Consensus 61 ----~~y~~~--------~~aDivvitaG~ 78 (307)
T cd05290 61 ----GDYDDC--------ADADIIVITAGP 78 (307)
T ss_pred ----CCHHHh--------CCCCEEEECCCC
Confidence 234333 799999988764
No 96
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.71 E-value=0.0027 Score=59.06 Aligned_cols=37 Identities=30% Similarity=0.603 Sum_probs=32.7
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++..||.|||+|.+|+.+|..|+..|..++.|+|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4568999999999999999999999986799999643
No 97
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.0082 Score=53.76 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=59.1
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+. .+.+...+.+.......++..+.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~ 64 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNP------------------DKLAAAAEEIEALKGAGAVRYEP 64 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHHHhccCCCceEEEE
Confidence 467899999997 8999999999999998 677776432 13333334444433334566666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|+||.+..
T Consensus 65 ~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 65 ADVTDEDQVARAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6776656665554432222347899887763
No 98
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.70 E-value=0.0049 Score=46.35 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=53.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC--CeEEEE-eCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI--GKLILF-DYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv--g~i~lv-D~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
||.|||+|.+|+.++..|.+.|+ .++.++ +.+. .|++ ++.+..+ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~------------------~~~~----~~~~~~~-~~~~~----- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP------------------EKAA----ELAKEYG-VQATA----- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH------------------HHHH----HHHHHCT-TEEES-----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH------------------HHHH----HHHHhhc-ccccc-----
Confidence 68999999999999999999994 455543 4322 1332 2333333 22221
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHH-HHHhCCceee
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMA-CNQLGQTWFE 144 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~-~~~~~~p~i~ 144 (292)
.+..+.+ ...|+||.|+........+.+. ....+..+|+
T Consensus 53 ---~~~~~~~-------~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 53 ---DDNEEAA-------QEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ---EEHHHHH-------HHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ---CChHHhh-------ccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 1222333 4699999999998877777666 3344444443
No 99
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.68 E-value=0.0026 Score=58.13 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD 48 (292)
.+++++|+|+|.|+ +|..++..|...|. ++++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 67899999999999 99999999999998 899876
No 100
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.0097 Score=57.59 Aligned_cols=36 Identities=36% Similarity=0.542 Sum_probs=32.3
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+++++|+|+|.|++|..+|..|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 578999999999999999999999996 699988754
No 101
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.015 Score=53.66 Aligned_cols=90 Identities=24% Similarity=0.365 Sum_probs=64.0
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.|++++++|.| .+|+|.++++.|++.|. ++.+++.+. .|.+.+.+.|.+.++..++..+.
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~------------------~~~~~~~~~l~~~~~~~~v~~~~ 71 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR------------------AKGEAAVAAIRTAVPDAKLSLRA 71 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhCCCCceEEEE
Confidence 46788888887 57899999999999995 677765322 36666667777777777777778
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+..+++.....+.+.|++|...
T Consensus 72 ~Dl~d~~sv~~~~~~~~~~~~~iD~li~nA 101 (313)
T PRK05854 72 LDLSSLASVAALGEQLRAEGRPIHLLINNA 101 (313)
T ss_pred ecCCCHHHHHHHHHHHHHhCCCccEEEECC
Confidence 788776666655443222345788888664
No 102
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.017 Score=50.65 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=62.6
Q ss_pred cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
+++|+|.| .|++|..+++.|++.|. ++++++.+. .+.+.+.+.+.+.+|..++..+..++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT------------------DRLEELKAELLARYPGIKVAVAALDV 62 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhhCCCceEEEEEcCC
Confidence 46788886 78999999999999995 788876532 23445556666777788888888888
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++.+.+...++.-...+.+.|+||.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 63 NDHDQVFEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 876666655543222345789888875
No 103
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.61 E-value=0.0063 Score=55.32 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.2
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++|+|+|+||.+.+++..|...|+.+++|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4589999999999999999999999999998754
No 104
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.57 E-value=0.0048 Score=57.38 Aligned_cols=36 Identities=22% Similarity=0.561 Sum_probs=32.7
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.++.||.|||+|.+|+.++..|+..|+.++.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 357799999999999999999999998889999964
No 105
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.55 E-value=0.016 Score=51.16 Aligned_cols=89 Identities=25% Similarity=0.336 Sum_probs=59.9
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+. .+.+.+.+.+.+. ..++..+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~i~~~--~~~~~~~~ 65 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDP------------------AKLAAAAESLKGQ--GLSAHALA 65 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CceEEEEE
Confidence 357889999986 9999999999999997 577766432 2334444555443 24566666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+..+++.....+.+.|+||.+..
T Consensus 66 ~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 66 FDVTDHDAVRAAIDAFEAEIGPIDILVNNAG 96 (255)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 7777666666655433223457899888764
No 106
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.53 E-value=0.017 Score=50.53 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=57.0
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++++|.|+ |++|..+++.|+..|. +++++|.+. .|.+.+.+.+++..+ ++..+..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~ 61 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQ------------------EKLEEAVAECGALGT--EVRGYAA 61 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--ceEEEEc
Confidence 56789999998 9999999999999996 588877432 244445555554433 4445555
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.++.....+.+.|.||.+..
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 62 NVTDEEDVEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 665545555444322112246788887764
No 107
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=96.51 E-value=0.0086 Score=49.17 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=62.9
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
|+|+|.| .+|+|.++++.|++.|-.++.+++.+ .-..+.+.+.+.+... ..+++....+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~----------------~~~~~~~~l~~~l~~~--~~~~~~~~~D~~ 62 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS----------------EDSEGAQELIQELKAP--GAKITFIECDLS 62 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS----------------CHHHHHHHHHHHHHHT--TSEEEEEESETT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec----------------cccccccccccccccc--cccccccccccc
Confidence 4678886 78999999999999999999998765 0123455555666644 477888888887
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+..+++.....+...|++|.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~ld~li~~ag 89 (167)
T PF00106_consen 63 DPESIRALIEEVIKRFGPLDILINNAG 89 (167)
T ss_dssp SHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred ccccccccccccccccccccccccccc
Confidence 777776655443333468899997764
No 108
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.054 Score=53.53 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=73.9
Q ss_pred HHHHHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302 11 NYEHIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE 89 (292)
Q Consensus 11 ~q~~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~ 89 (292)
-++-+.+++|+|-|+| ++||++++.+++.+.++|.++|.|. .|-..+...|++..|..++.
T Consensus 244 i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E------------------~~~~~i~~el~~~~~~~~~~ 305 (588)
T COG1086 244 IGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE------------------YKLYLIDMELREKFPELKLR 305 (588)
T ss_pred HHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch------------------HHHHHHHHHHHhhCCCcceE
Confidence 3567899999999765 6999999999999999999998765 46667778999999999999
Q ss_pred EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.+-.++.+.+.+...++. .++|+|+-|.
T Consensus 306 ~~igdVrD~~~~~~~~~~-----~kvd~VfHAA 333 (588)
T COG1086 306 FYIGDVRDRDRVERAMEG-----HKVDIVFHAA 333 (588)
T ss_pred EEecccccHHHHHHHHhc-----CCCceEEEhh
Confidence 888888776777666632 4599999876
No 109
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.50 E-value=0.013 Score=51.34 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=58.0
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|+|+ |++|.++++.|+..|.. +++++.+. .+.+.+...+.. ..++..+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~---~~~~~~~~~ 60 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNE------------------EAAERVAAEILA---GGRAIAVAA 60 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHhc---CCeEEEEEC
Confidence 56789999986 78999999999999976 88877543 122333333333 345666777
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++.+.+.+...++.....+.+.|+||.+..
T Consensus 61 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 90 (251)
T PRK07231 61 DVSDEADVEAAVAAALERFGSVDILVNNAG 90 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 777766666554332122357899988764
No 110
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.50 E-value=0.0069 Score=58.48 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=33.1
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+.+++|+|+|+|.+|..++..|...|+.+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 678999999999999999999999999999998754
No 111
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.50 E-value=0.031 Score=43.36 Aligned_cols=87 Identities=24% Similarity=0.292 Sum_probs=58.9
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccchh
Q psy2302 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLR 99 (292)
Q Consensus 20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~~ 99 (292)
|+|+|.|.+|..+++.|.. +--+++++|.|.= ++ +.+++.. +..+..+.++.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~------------------~~----~~~~~~~----~~~i~gd~~~~~ 53 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE------------------RV----EELREEG----VEVIYGDATDPE 53 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH------------------HH----HHHHHTT----SEEEES-TTSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH------------------HH----HHHHhcc----cccccccchhhh
Confidence 6899999999999999999 4468999998761 11 2333222 335555555534
Q ss_pred hHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302 100 KVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG 139 (292)
Q Consensus 100 ~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~ 139 (292)
-+.+. .+.+++.||.++++...-..+...+++.+
T Consensus 54 ~l~~a------~i~~a~~vv~~~~~d~~n~~~~~~~r~~~ 87 (116)
T PF02254_consen 54 VLERA------GIEKADAVVILTDDDEENLLIALLARELN 87 (116)
T ss_dssp HHHHT------TGGCESEEEEESSSHHHHHHHHHHHHHHT
T ss_pred HHhhc------CccccCEEEEccCCHHHHHHHHHHHHHHC
Confidence 44322 13689999999999887777777777643
No 112
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.49 E-value=0.026 Score=54.52 Aligned_cols=93 Identities=23% Similarity=0.283 Sum_probs=59.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
.+|+|+|+|.+|..+++.|...|. .++++|.+.- +.+. +++ ...+..+....++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~------------------~~~~----~~~---~~~~~~~~gd~~~ 54 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE------------------RLRR----LQD---RLDVRTVVGNGSS 54 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH------------------HHHH----HHh---hcCEEEEEeCCCC
Confidence 379999999999999999999886 5788886541 2222 211 1123344444443
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCce
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTW 142 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~ 142 (292)
...+.+. ...++|.||.++++...-..+-..+++. +.+.
T Consensus 55 ~~~l~~~------~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ 94 (453)
T PRK09496 55 PDVLREA------GAEDADLLIAVTDSDETNMVACQIAKSLFGAPT 94 (453)
T ss_pred HHHHHHc------CCCcCCEEEEecCChHHHHHHHHHHHHhcCCCe
Confidence 3333322 1268999999998877666666666665 4443
No 113
>PLN00203 glutamyl-tRNA reductase
Probab=96.47 E-value=0.0093 Score=59.02 Aligned_cols=78 Identities=26% Similarity=0.398 Sum_probs=53.3
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
|.+++|+|||+|.+|..++++|...|+.++++++.+. .|++.+++.+ +.+.+....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~------------------era~~La~~~----~g~~i~~~~-- 319 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE------------------ERVAALREEF----PDVEIIYKP-- 319 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH------------------HHHHHHHHHh----CCCceEeec--
Confidence 5579999999999999999999999999999977432 2444444433 233332211
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~ 126 (292)
.++..+.+ .++|+||.||....
T Consensus 320 ---~~dl~~al-------~~aDVVIsAT~s~~ 341 (519)
T PLN00203 320 ---LDEMLACA-------AEADVVFTSTSSET 341 (519)
T ss_pred ---HhhHHHHH-------hcCCEEEEccCCCC
Confidence 13333443 68999999986543
No 114
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.45 E-value=0.016 Score=50.82 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=57.0
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.+. .+.+.+.+++.. .++..+..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~--------------------~~~~~~~~~~~~--~~~~~~~~ 59 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE--------------------PSETQQQVEALG--RRFLSLTA 59 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch--------------------HHHHHHHHHhcC--CceEEEEC
Confidence 57889999997 7999999999999997 577765321 122334444433 34566677
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...+++....+.+.|++|.+..
T Consensus 60 D~~~~~~~~~~~~~~~~~~~~~d~li~~ag 89 (248)
T TIGR01832 60 DLSDIEAIKALVDSAVEEFGHIDILVNNAG 89 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777766666554432222357899988763
No 115
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.42 E-value=0.0069 Score=50.54 Aligned_cols=118 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
++|.+||+|..|+.+|.+|++.|.. +++.|.+.- .+.+. .+.|-..++..++.+.+. ++-+.. +.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~---~~~~~----~~~g~~~~~s~~e~~~~~--dvvi~~----v~~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPE---KAEAL----AEAGAEVADSPAEAAEQA--DVVILC----VPD 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHH---HHHHH----HHTTEEEESSHHHHHHHB--SEEEE-----SSS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchh---hhhhh----HHhhhhhhhhhhhHhhcc--cceEee----ccc
Confidence 4899999999999999999999974 778874431 11110 000111111112222211 222222 222
Q ss_pred hhhHHHHHhcCC--CCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 98 LRKVGALAVQGS--LTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 98 ~~~~~~~i~~~~--~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
.+..++.+.... ....+-.++||++. +++....+.+.+.++|+.|+++.+.+
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G 122 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG 122 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec
Confidence 244444443311 11245677777755 56777889999999999999887765
No 116
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.42 E-value=0.014 Score=51.30 Aligned_cols=38 Identities=37% Similarity=0.364 Sum_probs=35.1
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
.|+.+||+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 67889999999999999999999999999999999654
No 117
>PRK09186 flagellin modification protein A; Provisional
Probab=96.40 E-value=0.021 Score=50.35 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=56.4
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|.++++.|++.|. ++.+++.+ ..+.+.+.+.+....+.-.+.....
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~------------------~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAADID------------------KEALNELLESLGKEFKSKKLSLVEL 62 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecC------------------hHHHHHHHHHHHhhcCCCceeEEEe
Confidence 45788999986 7999999999999996 46665421 1344444555544333333444456
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++++.+.+.+.++.....+.+.|+||.+.
T Consensus 63 Dl~d~~~~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 63 DITDQESLEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred cCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 66665666655543222335689999775
No 118
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.02 Score=50.62 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=58.6
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++++|.|+ |++|.++++.|++.|. ++.+++.+ ..+.+.+.+.++... .++..+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~------------------~~~~~~~~~~l~~~~--~~~~~~~~ 65 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARH------------------LDALEKLADEIGTSG--GKVVPVCC 65 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC------------------HHHHHHHHHHHHhcC--CeEEEEEc
Confidence 66889999987 8999999999999997 46665532 124445555555443 34556667
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++++.+.+.+.++.....+.+.|++|.+.
T Consensus 66 D~~~~~~~~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 66 DVSQHQQVTSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 77766666655543322335789998765
No 119
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.38 E-value=0.019 Score=50.15 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=58.0
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.| .|++|..+++.|++.|. ++++++.+. .|...+.+.+.+.++ ++..+..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~ 62 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICG------------------DDAAATAELVEAAGG--KARARQV 62 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--eEEEEEC
Confidence 5678999998 69999999999999997 577776543 244444455554443 3556666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++++.+.+.+.+......+.++|+||.+.
T Consensus 63 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a 91 (251)
T PRK12826 63 DVRDRAALKAAVAAGVEDFGRLDILVANA 91 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 67665666655433222234789988886
No 120
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.35 E-value=0.014 Score=57.13 Aligned_cols=125 Identities=11% Similarity=0.115 Sum_probs=71.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCCh--HHHHHHHHHHhh-CCCCeEEEEecc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLS--KVEAARITLQNI-NPDVTIEVHNFN 94 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~--Ka~a~~~~l~~~-np~v~v~~~~~~ 94 (292)
++|.|||+|..|+.+|.+|++.|. ++++.|.+.=....+.... ..-|.. -+.-+++.++.+ .|++-+....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~---~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~-- 75 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA---KEGNTRVKGYHTLEELVNSLKKPRKVILLIK-- 75 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh---hhcCCcceecCCHHHHHhcCCCCCEEEEEeC--
Confidence 479999999999999999999997 6888886442211111000 000110 112233333332 2443333221
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceeecCcccc
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFESGVSEN 150 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~~~~~~~ 150 (292)
..+..++.++.....+.+-|+|||++.. +.......+.+.+.|+.|++++++|+
T Consensus 76 --~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 76 --AGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred --ChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 1123333332211123567999999865 44445556788889999999999873
No 121
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.34 E-value=0.018 Score=52.88 Aligned_cols=119 Identities=16% Similarity=0.238 Sum_probs=69.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~~~i~~ 97 (292)
+|.|||+|..|+.++.+|++.|. ++++.|.+.-....+ .+.|..-+.-..+.+... ++++-+...+..-..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~-------~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL-------AEEGATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH-------HHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 69999999999999999999986 588888753211111 011221111222222222 345555544432110
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
.+-+..+.. .+.+-++||+++. ++.....+.+.+.+.|+.|+++.+++
T Consensus 74 ~~v~~~l~~----~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG 122 (301)
T PRK09599 74 DATIDELAP----LLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSG 122 (301)
T ss_pred HHHHHHHHh----hCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCc
Confidence 012222221 1244578888854 45555667788999999999988876
No 122
>PRK04148 hypothetical protein; Provisional
Probab=96.34 E-value=0.047 Score=44.25 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=70.2
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
++.+|++||+| .|..+|..|++.|. +++.+|-+. ..++.+++. . +++...++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~------------------~aV~~a~~~------~--~~~v~dDl 67 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE------------------KAVEKAKKL------G--LNAFVDDL 67 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHh------C--CeEEECcC
Confidence 45789999999 99999999999995 788888544 133333332 1 33444445
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
.+ .++.- ++++|+|-..-..++....|-+.+.+.+.+++.--.++
T Consensus 68 f~-p~~~~--------y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 68 FN-PNLEI--------YKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CC-CCHHH--------HhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 43 23321 37899999999999999999999999999988765443
No 123
>PRK06194 hypothetical protein; Provisional
Probab=96.33 E-value=0.025 Score=50.85 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=57.1
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|.++++.|++.|. +++++|.+. .+.+...+.+... ..++..+..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~ 62 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQ------------------DALDRAVAELRAQ--GAEVLGVRT 62 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCCh------------------HHHHHHHHHHHhc--CCeEEEEEC
Confidence 45678999975 8999999999999997 578877532 1222223333322 345667777
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.....+.+.|+||.+..
T Consensus 63 D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 63 DVSDAAQVEALADAALERFGAVHLLFNNAG 92 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 787766666555432223356899988764
No 124
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.33 E-value=0.026 Score=49.74 Aligned_cols=88 Identities=17% Similarity=0.348 Sum_probs=57.6
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|..+++.|++.|. ++++++.+. .+.+.+.+.+..... ++..+..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~ 65 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRV------------------ERLKELRAEIEAEGG--AAHVVSL 65 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--cEEEEEe
Confidence 56789999986 9999999999999997 577765432 133344444444332 3555666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.+.+....+.+.|+||.+..
T Consensus 66 D~~~~~~~~~~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 66 DVTDYQSIKAAVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 666656666554432223457899998775
No 125
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.33 E-value=0.032 Score=49.33 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=58.7
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
+++|+|.|. |++|..+++.|+..|. ++.++|.+. .+.+...+.+...++..++..+..++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINS------------------EKAANVAQEINAEYGEGMAYGFGADA 62 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHhcCCceeEEEEccC
Confidence 467888877 6899999999999986 678877432 23334445555555445567777777
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++.+.+...+++....+.+.|+||.+..
T Consensus 63 ~~~~~i~~~~~~~~~~~~~id~vv~~ag 90 (259)
T PRK12384 63 TSEQSVLALSRGVDEIFGRVDLLVYNAG 90 (259)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 7666666555433223457899988763
No 126
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.32 E-value=0.027 Score=50.49 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=57.9
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++++|.|+ |++|.++++.|++.|. ++.++|.+. .+.+.+.+.+.+. ..++..+.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~ 65 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQ------------------EKAEAVVAEIKAA--GGEALAVK 65 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEE
Confidence 467889999986 8999999999999998 688777532 1333444444432 23566666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|++|.+..
T Consensus 66 ~Dl~~~~~v~~~~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 66 ADVLDKESLEQARQQILEDFGPCDILINGAG 96 (278)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6776655555544332222357888887754
No 127
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.32 E-value=0.0091 Score=54.69 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.|.+++|+|+|.|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5778999999999999999999999997 8888775
No 128
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.31 E-value=0.021 Score=50.90 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302 14 HIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV 90 (292)
Q Consensus 14 ~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~ 90 (292)
.+++++++|.|+ +|+|.++++.|++.|. ++.+.+... | ...+.+.+++.+ . ..++..
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~-------~--------~~~~~~~~~~~~---~-~~~~~~ 63 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGE-------R--------LEKEVRELADTL---E-GQESLL 63 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcc-------c--------chHHHHHHHHHc---C-CCceEE
Confidence 356789999998 5999999999999997 576665310 0 011222222222 1 235556
Q ss_pred EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+..++++.+.+..+++.....+.+.|++|.+.
T Consensus 64 ~~~Dv~d~~~v~~~~~~~~~~~g~ld~lv~na 95 (257)
T PRK08594 64 LPCDVTSDEEITACFETIKEEVGVIHGVAHCI 95 (257)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCccEEEECc
Confidence 66777776666665544333346788888764
No 129
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.31 E-value=0.033 Score=53.78 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=62.9
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+...+|+|+|+|.+|..+++.|...|. +++++|.|. .+. +++++..+++. ....+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~------------------~~~----~~~~~~~~~~~--~i~gd 283 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP------------------ERA----EELAEELPNTL--VLHGD 283 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH------------------HHH----HHHHHHCCCCe--EEECC
Confidence 346899999999999999999999887 589998664 012 22333333433 33334
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT 141 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p 141 (292)
.++.+.+.+. ...++|.||.++++...-..+...+++.+.+
T Consensus 284 ~~~~~~L~~~------~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 284 GTDQELLEEE------GIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred CCCHHHHHhc------CCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 4433333221 1368999999998877666666667776554
No 130
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.026 Score=49.81 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=59.0
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++++|.|+ ||+|.++++.|++.|. ++.+++.+. .+.+.+.+.+++... ++..+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~ 62 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQ------------------AELDQLVAEIRAEGG--EAVALAG 62 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--cEEEEEc
Confidence 56788999986 7999999999999997 577766431 355556666665543 4556666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...+++....+.+.|++|.+..
T Consensus 63 D~~~~~~~~~~~~~~~~~~~~id~li~~ag 92 (254)
T PRK07478 63 DVRDEAYAKALVALAVERFGGLDIAFNNAG 92 (254)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 777666665554432222357898887663
No 131
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.29 E-value=0.021 Score=52.60 Aligned_cols=72 Identities=22% Similarity=0.348 Sum_probs=50.7
Q ss_pred EEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC---CeEEEEeccc
Q psy2302 20 VIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD---VTIEVHNFNI 95 (292)
Q Consensus 20 V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~---v~v~~~~~~i 95 (292)
|.|||+|.+|+.+|..|+..|+ .+|+|+|.+. .|++..+..|....+. +++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~------------------~~~~g~~~DL~~~~~~~~~~~i~~----- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE------------------EKAKGDALDLSHASAFLATGTIVR----- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc------------------cHHHHHHHhHHHhccccCCCeEEE-----
Confidence 5799999999999999999997 6799999632 3556666667766543 22221
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
+ .+++++ .++|+||.+...
T Consensus 58 ~--~~~~~l--------~~aDiVIitag~ 76 (300)
T cd00300 58 G--GDYADA--------ADADIVVITAGA 76 (300)
T ss_pred C--CCHHHh--------CCCCEEEEcCCC
Confidence 1 223332 789999998864
No 132
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.28 E-value=0.025 Score=54.61 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=33.2
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
.+.+++|+|+|+|.+|..+++.|...|+ +++++|.|.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3588999999999999999999999998 799988654
No 133
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.26 E-value=0.026 Score=50.66 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=55.6
Q ss_pred HhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 15 IRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 15 L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
++++.++|.|++ |+|.++|+.|++.|. ++.+.|.+. |.+...+.+....+. ...+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~-------------------~~~~~~~~~~~~~~~--~~~~ 61 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-------------------KLKGRVEEFAAQLGS--DIVL 61 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch-------------------hHHHHHHHHHhccCC--ceEe
Confidence 677899999996 799999999999996 477766321 111112222222232 2345
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+..+++.....+.+.|++|.+..
T Consensus 62 ~~Dl~~~~~v~~~~~~~~~~~g~iD~linnAg 93 (262)
T PRK07984 62 PCDVAEDASIDAMFAELGKVWPKFDGFVHSIG 93 (262)
T ss_pred ecCCCCHHHHHHHHHHHHhhcCCCCEEEECCc
Confidence 66777767777665543334467899887764
No 134
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.26 E-value=0.035 Score=49.63 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=60.3
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++++|.|+ ||+|.++++.|++.|. ++.++|.+. .+.+.+++.+++.. ..++..+..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~-~~~~~~~~~ 65 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNE------------------ENLKKAREKIKSES-NVDVSYIVA 65 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhhc-CCceEEEEe
Confidence 56788899987 6899999999999996 587777432 24445555555443 345667777
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+..+++... .+.+.|++|.+..
T Consensus 66 Dv~~~~~i~~~~~~~~-~~g~iD~lv~nag 94 (263)
T PRK08339 66 DLTKREDLERTVKELK-NIGEPDIFFFSTG 94 (263)
T ss_pred cCCCHHHHHHHHHHHH-hhCCCcEEEECCC
Confidence 7877677766654332 2467898887753
No 135
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.26 E-value=0.024 Score=52.53 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=50.6
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCC---eEEEEe
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDV---TIEVHN 92 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v---~v~~~~ 92 (292)
..||.|||+|.+|+.+|..|+..|. .+|.|+|-.. .|++..+.-|+...|.. ++...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~------------------~~~~g~a~Dl~~~~~~~~~~~v~~~- 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE------------------DKLKGEAMDLQHGSAFLKNPKIEAD- 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc------------------cHHHHHHHHHHHhhccCCCCEEEEC-
Confidence 3589999999999999999999997 5799998532 24555555555554332 22211
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.+++++ .++|+||.+..
T Consensus 64 ------~dy~~~--------~~adivvitaG 80 (312)
T cd05293 64 ------KDYSVT--------ANSKVVIVTAG 80 (312)
T ss_pred ------CCHHHh--------CCCCEEEECCC
Confidence 234432 78999998764
No 136
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.032 Score=50.88 Aligned_cols=88 Identities=25% Similarity=0.305 Sum_probs=57.0
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ ||+|..+++.|++.|. ++.+++.+. .+.+.+.+.+ ....++..+.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~l~~~~~~l---~~~~~~~~~~ 63 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEE------------------AELAALAAEL---GGDDRVLTVV 63 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh---cCCCcEEEEE
Confidence 367889999986 8999999999999997 677776431 2333333333 2234555555
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|+||.+..
T Consensus 64 ~Dv~d~~~v~~~~~~~~~~~g~id~vI~nAG 94 (296)
T PRK05872 64 ADVTDLAAMQAAAEEAVERFGGIDVVVANAG 94 (296)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6777666665554432223357899988764
No 137
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.24 E-value=0.052 Score=53.44 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=72.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCCh---HHHHHHHHHHhh-CCCCeEEEEec
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLS---KVEAARITLQNI-NPDVTIEVHNF 93 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~---Ka~a~~~~l~~~-np~v~v~~~~~ 93 (292)
.+|.+||+|-.|+.+|.+|++.|. ++++.|.+.=....+... ....|.. -+...++....+ .|++-+.....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~---~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~ 82 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER---AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKA 82 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh---hhhcCCcccccCCCHHHHHhcCCCCCEEEEECCC
Confidence 479999999999999999999996 577877542111111000 0000211 112222333222 24544443322
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceeecCcccc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFESGVSEN 150 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~~~~~~~ 150 (292)
.+..++.+......+.+-|+|||++-. +.....+.+.+.+.|+.|++++++|+
T Consensus 83 ----~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 83 ----GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred ----cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 133333321111123567899999775 56666778889999999999999873
No 138
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.23 E-value=0.01 Score=54.58 Aligned_cols=32 Identities=31% Similarity=0.659 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.||.|+|+|.+|+.+|..|+..|.+++.|+|-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999996
No 139
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.026 Score=49.49 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=56.3
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++++|.|+ |++|..+++.|+..|. ++.+++.+. .+.+...+.+. ...++..+..
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~---~~~~~~~~~~ 60 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDA------------------EAAERVAAAIA---AGGRAFARQG 60 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCH------------------HHHHHHHHHHh---cCCeEEEEEc
Confidence 56789999977 7999999999999985 577766421 12222233332 3456777777
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.++.-...+.+.|+||.+..
T Consensus 61 D~~~~~~~~~~~~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 61 DVGSAEAVEALVDFVAARWGRLDVLVNNAG 90 (252)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777666665544332222357899988764
No 140
>PLN02602 lactate dehydrogenase
Probab=96.21 E-value=0.023 Score=53.54 Aligned_cols=32 Identities=38% Similarity=0.520 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDY 49 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~ 49 (292)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999999997 58999985
No 141
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.20 E-value=0.033 Score=56.50 Aligned_cols=90 Identities=16% Similarity=0.327 Sum_probs=64.0
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
+.+|+|+|+|.+|..+++.|.+.|+ +++++|.|.- +++.+ ++. + ...+..+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~------------------~v~~~----~~~--g--~~v~~GDat 452 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD------------------HIETL----RKF--G--MKVFYGDAT 452 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH------------------HHHHH----Hhc--C--CeEEEEeCC
Confidence 4799999999999999999999997 5889998762 23222 221 2 234555555
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG 139 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~ 139 (292)
+.+-+++ . -.+++|+||.++|+.+.-..+-..++++.
T Consensus 453 ~~~~L~~----a--gi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 453 RMDLLES----A--GAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred CHHHHHh----c--CCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 5343332 1 13689999999999988877777777763
No 142
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.033 Score=50.79 Aligned_cols=89 Identities=17% Similarity=0.273 Sum_probs=59.6
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+. .+.+.+.+.+.... .++..+.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~------------------~~l~~~~~~l~~~~--~~~~~~~ 95 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARRE------------------DLLDAVADRITRAG--GDAMAVP 95 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence 567789999986 9999999999999996 677766431 23444455554432 3456667
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.++.....+.+.|+||.+..
T Consensus 96 ~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG 126 (293)
T PRK05866 96 CDLSDLDAVDALVADVEKRIGGVDILINNAG 126 (293)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 7777666666555432222357899998763
No 143
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.18 E-value=0.017 Score=54.80 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=31.6
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+..++|+|+|+|.+|..+++.|.+.|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 467889999999999999999999998 69999864
No 144
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.17 E-value=0.024 Score=51.57 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=66.6
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRC----GI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN 83 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~----Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n 83 (292)
+|++.||+++|+|+-|..++++|..+ |+ ++|.++|.+=+=.. ...|+-..|...+++ .+
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~-------~r~~l~~~~~~~a~~----~~ 90 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTK-------DRKDLTPFKKPFARK----DE 90 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeC-------CCCcchHHHHHHHhh----cC
Confidence 78999999999999999999999988 99 79999996542111 112333334443332 22
Q ss_pred CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302 84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~ 145 (292)
+ . . ..++.+.++. -++|++|-++. ..-++..|...+.....|.|+.
T Consensus 91 ~-------~-~---~~~L~e~i~~-----v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 91 E-------K-E---GKSLLEVVKA-----VKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred c-------c-c---CCCHHHHHHh-----cCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 2 0 0 1344455521 27888888774 3345566666666666777754
No 145
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.17 E-value=0.037 Score=48.43 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=58.0
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|..+++.|++.|.. +.+++.+. .|.+...+.++... .++..+..
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 63 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGLA------------------AEARELAAALEAAG--GRAHAIAA 63 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence 56789999986 89999999999999974 66654321 23344445554443 34666677
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+..+++.....+.+.|+||.+..
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 64 DLADPASVQRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777666666555432223357899998764
No 146
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.027 Score=50.26 Aligned_cols=88 Identities=25% Similarity=0.269 Sum_probs=56.8
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++|+|.|+ |++|..+++.|+..|.. +.++|.+. .+.....+.+.+..+ ++..+.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~ 64 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRSQ------------------EKVDAAVAQLQQAGP--EGLGVS 64 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHHhCC--ceEEEE
Confidence 577899999987 89999999999999864 77777542 123333444444433 345556
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+...++.....+.+.|+||.+.
T Consensus 65 ~Dv~~~~~i~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 65 ADVRDYAAVEAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 667665656554433222235689988664
No 147
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.13 E-value=0.035 Score=49.15 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=58.4
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++|+|.| .|++|..+++.|+..|. +++++|.+. .+.+.+.+.+...+ .++..+.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~i~~~~--~~~~~~~ 67 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKA------------------EELEEAAAHLEALG--IDALWIA 67 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEEE
Confidence 57789999998 49999999999999997 677776432 23444445554433 3455567
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...+......+.+.|.||.+..
T Consensus 68 ~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 68 ADVADEADIERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 7777666665444322112356898887753
No 148
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.12 E-value=0.035 Score=49.13 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=55.7
Q ss_pred HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
.++++++++|.|+ |++|.++++.|+..|. ++.++|.+. ....+.+.+.... .++..+
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~~~~~--~~~~~~ 61 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSE-------------------LVHEVAAELRAAG--GEALAL 61 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCch-------------------HHHHHHHHHHhcC--CeEEEE
Confidence 3577889999977 7899999999999996 577766421 1122333443332 345556
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
..++++.+.+...+++....+.+.|++|.+.
T Consensus 62 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~nA 92 (260)
T PRK12823 62 TADLETYAGAQAAMAAAVEAFGRIDVLINNV 92 (260)
T ss_pred EEeCCCHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 6667665555554443222335789888765
No 149
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.12 E-value=0.025 Score=50.17 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302 14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV 90 (292)
Q Consensus 14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~ 90 (292)
+|++++++|.|++ |+|..+|+.|++.|.. +.+.+.+. +. .+.+.++.+ -++..
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~~-------------------~~---~~~~~~~~~-~~~~~ 59 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQND-------------------RM---KKSLQKLVD-EEDLL 59 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCch-------------------HH---HHHHHhhcc-CceeE
Confidence 3678899999985 9999999999999964 66654321 11 112223322 24556
Q ss_pred EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+..++++.+.++.+++.....+.+.|++|.+..
T Consensus 60 ~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 60 VECDVASDESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 667777666666554433223457888887653
No 150
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.11 E-value=0.031 Score=52.06 Aligned_cols=89 Identities=26% Similarity=0.385 Sum_probs=60.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ ||+|.++++.|++.|. ++.+++.+. .+.+.+.+.+++.. .++..+.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~------------------~~l~~~~~~~~~~g--~~~~~~~ 62 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDE------------------EALQAVAEECRALG--AEVLVVP 62 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence 466789999988 8999999999999997 477766432 23444445555443 3555666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.++++.....+.+.|++|.+..
T Consensus 63 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 63 TDVTDADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred eeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 6777766666555433223467899998763
No 151
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.10 E-value=0.032 Score=53.68 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=32.3
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+.+++|+|+|+|.+|..+++.+...|+ +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 578899999999999999999999999 688888654
No 152
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.04 Score=49.67 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=57.9
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.| .|++|.++++.|++.|. ++.++|.+. ++.+.+.+.++.. ..++..+..
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~------------------~~l~~~~~~l~~~--~~~~~~~~~ 62 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDK------------------PGLRQAVNHLRAE--GFDVHGVMC 62 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEeC
Confidence 5677888886 77999999999999997 477766432 2333344445433 235666777
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++++.+.+..+++.....+.+.|+||.+.
T Consensus 63 Dv~d~~~v~~~~~~~~~~~g~id~li~nA 91 (275)
T PRK05876 63 DVRHREEVTHLADEAFRLLGHVDVVFSNA 91 (275)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 77776766665543322345789888765
No 153
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.07 E-value=0.039 Score=48.71 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=57.3
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.+. .+.+.+.+.+++.. .++..+..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 63 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQ------------------DGANAVADEINKAG--GKAIGVAM 63 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCh------------------HHHHHHHHHHHhcC--ceEEEEEC
Confidence 56788999988 9999999999999997 577766432 23444445555433 34555666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.+......+.+.|+||.+..
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 64 DVTNEDAVNAGIDKVAERFGSVDILVSNAG 93 (262)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 777656665544322112346888887764
No 154
>PRK08589 short chain dehydrogenase; Validated
Probab=96.07 E-value=0.036 Score=49.75 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=57.4
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++++|.|+ ||+|.++++.|+..|. ++.++|.+ .+.+.+.+.+++.. .++..+.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-------------------~~~~~~~~~~~~~~--~~~~~~~ 60 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-------------------EAVSETVDKIKSNG--GKAKAYH 60 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-------------------HHHHHHHHHHHhcC--CeEEEEE
Confidence 467789999987 8999999999999996 56666532 23444445554432 3456666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+..+++.....+.+.|++|.+.
T Consensus 61 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~A 90 (272)
T PRK08589 61 VDISDEQQVKDFASEIKEQFGRVDVLFNNA 90 (272)
T ss_pred eecCCHHHHHHHHHHHHHHcCCcCEEEECC
Confidence 777766666555443332345788888775
No 155
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.06 E-value=0.012 Score=43.78 Aligned_cols=38 Identities=37% Similarity=0.531 Sum_probs=34.2
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
.+..++++|+|+|..|..++..|...|..++.+.|.|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi 57 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI 57 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 36789999999999999999999999888999998844
No 156
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.06 E-value=0.13 Score=42.99 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=59.3
Q ss_pred EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302 20 VIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL 98 (292)
Q Consensus 20 V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~ 98 (292)
|+|+|+ |.+|..+++.|.+.| -+++.+=.+. .|.+ + .+. ++....++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~------------------~~~~-------~-~~~--~~~~~~d~~d~ 51 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSP------------------SKAE-------D-SPG--VEIIQGDLFDP 51 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG------------------GGHH-------H-CTT--EEEEESCTTCH
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCc------------------hhcc-------c-ccc--cccceeeehhh
Confidence 789997 999999999999999 5566532211 1221 1 344 45556666666
Q ss_pred hhHHHHHhcCCCCCCCcceEEeccCC----HHHHHHHHHHHHHhCCcee
Q psy2302 99 RKVGALAVQGSLTEGPVDLVLSCVDN----FEARMTINMACNQLGQTWF 143 (292)
Q Consensus 99 ~~~~~~i~~~~~~~~~~DlVv~a~d~----~~~r~~in~~~~~~~~p~i 143 (292)
+.+.+.+ .++|.||.+... ...-..+-+++.+.+++.+
T Consensus 52 ~~~~~al-------~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 93 (183)
T PF13460_consen 52 DSVKAAL-------KGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRV 93 (183)
T ss_dssp HHHHHHH-------TTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred hhhhhhh-------hhcchhhhhhhhhcccccccccccccccccccccc
Confidence 6666665 689999999863 2333456677878787643
No 157
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.056 Score=48.68 Aligned_cols=84 Identities=30% Similarity=0.494 Sum_probs=56.6
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++.++|.|+||+|.++++.|+ .| .++.++|.+. .+.+.+.+.++.. ..++..+..+++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r~~------------------~~~~~~~~~l~~~--~~~~~~~~~Dv~ 59 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADYNE------------------ENLEAAAKTLREA--GFDVSTQEVDVS 59 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEEeecC
Confidence 467889999999999999996 67 4688877432 1333444455433 345667777787
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+...++.. ..+.+.|++|.+..
T Consensus 60 d~~~i~~~~~~~-~~~g~id~li~nAG 85 (275)
T PRK06940 60 SRESVKALAATA-QTLGPVTGLVHTAG 85 (275)
T ss_pred CHHHHHHHHHHH-HhcCCCCEEEECCC
Confidence 767776665432 12467899998764
No 158
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.041 Score=48.65 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=57.9
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ |++|..+++.|+..|..++.++|.+.- +.....+.+.+. ..++..+.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~------------------~~~~~~~~l~~~--~~~~~~~~ 62 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAE------------------KGEAQAAELEAL--GAKAVFVQ 62 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHH------------------HHHHHHHHHHhc--CCeEEEEE
Confidence 367889999986 799999999999999887888775421 112223334332 33555566
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.++.....+.+.|+||.+..
T Consensus 63 ~D~~~~~~~~~~~~~~~~~~g~id~li~~ag 93 (260)
T PRK06198 63 ADLSDVEDCRRVVAAADEAFGRLDALVNAAG 93 (260)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 6666655555554332222356899988864
No 159
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.03 E-value=0.033 Score=50.36 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=30.0
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.++++|+|+|+|++|..++..|+..|. +++++|.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 347789999999999999999999996 8888764
No 160
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.02 E-value=0.037 Score=49.23 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=58.7
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.|++++|+|.|+ +|+|.++++.|+..|.. +++++.. ...+.+...+.+.... ..++..+.
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~-----------------~~~~~~~~~~~~~~~~-~~~~~~~~ 65 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNS-----------------NVEEANKIAEDLEQKY-GIKAKAYP 65 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCC-----------------CHHHHHHHHHHHHHhc-CCceEEEE
Confidence 567889999976 79999999999999975 5554311 0123444444444322 34667777
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+...++.....+.+.|++|.+.
T Consensus 66 ~D~~~~~~~~~~~~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 66 LNILEPETYKELFKKIDEDFDRVDFFISNA 95 (260)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCccEEEECc
Confidence 788776777665544333346789988765
No 161
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.01 E-value=0.039 Score=50.24 Aligned_cols=31 Identities=19% Similarity=0.493 Sum_probs=28.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
||+|+|+|.+|+.++..|++.| .+++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence 7999999999999999999998 478998864
No 162
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.01 E-value=0.061 Score=48.64 Aligned_cols=88 Identities=25% Similarity=0.391 Sum_probs=67.3
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
++.++++|-|+ +|+|-++|+.|++-|. ++.|+-.+. .|-+.+++.|.+.. .++++.+..
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~------------------~kL~~la~~l~~~~-~v~v~vi~~ 63 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARRE------------------DKLEALAKELEDKT-GVEVEVIPA 63 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH------------------HHHHHHHHHHHHhh-CceEEEEEC
Confidence 45778999987 7999999999999995 466755332 47788889998887 899999999
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++++.+++..+..+........|++|++.
T Consensus 64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 64 DLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred cCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 99887777655433232334789999876
No 163
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.048 Score=48.29 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=56.2
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++|+|.|+ |++|..+++.|+..|. +++++|.+. .+.+.+.+.++.... ++..+..+++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~Dl~ 60 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNE------------------TRLASLAQELADHGG--EALVVPTDVS 60 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--cEEEEEccCC
Confidence 57899988 8999999999999996 788776432 234444455555433 4556666776
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+...+++....+.+.|+||.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~vi~~ag 87 (263)
T PRK06181 61 DAEACERLIEAAVARFGGIDILVNNAG 87 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 666666555432222357899998863
No 164
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.99 E-value=0.043 Score=51.12 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=62.6
Q ss_pred hcCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLT-RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
..++|+|+|+|+.|...+..|. ..++.++.++|.+. .|++.+++++++.. .+++..+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~------------------~~a~~~~~~~~~~~-~~~~~~~--- 183 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTF------------------EKAYAFAQEIQSKF-NTEIYVV--- 183 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCH------------------HHHHHHHHHHHHhc-CCcEEEe---
Confidence 4678999999999999888775 45899999987542 36777777776543 2343332
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
+++++.+ .++|+|+.||.+.. ..+. .+.+.|.-++..
T Consensus 184 ----~~~~~~~-------~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 184 ----NSADEAI-------EEADIIVTVTNAKT--PVFS-EKLKKGVHINAV 220 (325)
T ss_pred ----CCHHHHH-------hcCCEEEEccCCCC--cchH-HhcCCCcEEEec
Confidence 2344444 68999999998753 2334 444555544433
No 165
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.036 Score=49.34 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=55.1
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++++|.|+ |++|..+++.|++.|. +++++|.+.- +.+.+.+ ++. .++..+.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~---~~~--~~~~~~~ 58 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDAD------------------NGAAVAA---SLG--ERARFIA 58 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHH---HhC--CeeEEEE
Confidence 366789999986 8999999999999997 7888765321 1222222 222 2455666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.+......+...|++|.+..
T Consensus 59 ~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 59 TDITDDAAIERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred ecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 6777666666555432223457888887653
No 166
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.97 E-value=0.039 Score=50.86 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=29.2
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
..||+|+|+|++|+.++..|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3589999999999999999999995 68888864
No 167
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.93 E-value=0.032 Score=49.39 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=33.2
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.|+.+||+|.|.|.+|..+++.|.+.|+.-+.+.|.+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 5789999999999999999999999998777788763
No 168
>PRK06125 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.081 Score=46.85 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=59.5
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++|+|.|+ |++|..+++.|+..|. ++.++|.+. .+.+.+.+.+.+.. ..++..+.
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~~ 63 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDA------------------DALEALAADLRAAH-GVDVAVHA 63 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhhc-CCceEEEE
Confidence 467889999988 7999999999999998 788877532 23344445554433 34566666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++. +...|++|.+..
T Consensus 64 ~D~~~~~~~~~~~~~----~g~id~lv~~ag 90 (259)
T PRK06125 64 LDLSSPEAREQLAAE----AGDIDILVNNAG 90 (259)
T ss_pred ecCCCHHHHHHHHHH----hCCCCEEEECCC
Confidence 777766666665542 257899888753
No 169
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.91 E-value=0.053 Score=50.51 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=55.5
Q ss_pred cCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLT-RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.++++|+|+|+.|...+..|. ..++.++++++.+. .|++.+++++++..+ +++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~------------------~~a~~~a~~~~~~~g-~~v~~~---- 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDS------------------AKAEALALQLSSLLG-IDVTAA---- 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCH------------------HHHHHHHHHHHhhcC-ceEEEe----
Confidence 468999999999999999997 47889999976432 478888888765432 444332
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF 125 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~ 125 (292)
+++++.+ .++|+|+.||...
T Consensus 186 ---~~~~~av-------~~aDiVvtaT~s~ 205 (326)
T TIGR02992 186 ---TDPRAAM-------SGADIIVTTTPSE 205 (326)
T ss_pred ---CCHHHHh-------ccCCEEEEecCCC
Confidence 3344444 6899999999763
No 170
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.89 E-value=0.068 Score=49.47 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=52.2
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhC-CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCG-IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~G-vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+++++|+|.|+ |++|+.+++.|+..| ..+++++|.+.. +...+.+.+ +.-+++.+.
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~------------------~~~~~~~~~----~~~~~~~v~ 59 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL------------------KQWEMQQKF----PAPCLRFFI 59 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh------------------HHHHHHHHh----CCCcEEEEE
Confidence 45788999986 899999999999987 457888774421 111111211 122455666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+.+.+ .++|+||.+.
T Consensus 60 ~Dl~d~~~l~~~~-------~~iD~Vih~A 82 (324)
T TIGR03589 60 GDVRDKERLTRAL-------RGVDYVVHAA 82 (324)
T ss_pred ccCCCHHHHHHHH-------hcCCEEEECc
Confidence 7777766666655 5689998765
No 171
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.89 E-value=0.064 Score=50.44 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=60.8
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
...+|+|+|+|.+|--.+..+...|..+++++|.+.- |.+.+++. . ...+......-
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~------------------Rl~~A~~~----~-g~~~~~~~~~~ 224 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE------------------RLELAKEA----G-GADVVVNPSED 224 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH------------------HHHHHHHh----C-CCeEeecCccc
Confidence 3348999999999999999999999999999986541 33333332 1 11111111110
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW 142 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~ 142 (292)
.......++- . -.++|+||+|+.+..+.....++++..|.-.
T Consensus 225 ~~~~~~~~~t-~----g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 225 DAGAEILELT-G----GRGADVVIEAVGSPPALDQALEALRPGGTVV 266 (350)
T ss_pred cHHHHHHHHh-C----CCCCCEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 0001111111 0 1369999999998877777777776666543
No 172
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.89 E-value=0.08 Score=48.24 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|.|+|+|..|+.+|..|++.|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 699998653
No 173
>PLN02253 xanthoxin dehydrogenase
Probab=95.88 E-value=0.045 Score=49.08 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=56.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++++|.|+ |++|.++++.|++.|. ++.++|.+. .+.+.+.+.+ ....++..+.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~------------------~~~~~~~~~~---~~~~~~~~~~ 72 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQD------------------DLGQNVCDSL---GGEPNVCFFH 72 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHh---cCCCceEEEE
Confidence 466788999975 7899999999999996 577776421 1222222322 2234566777
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.+......+.+.|+||.+..
T Consensus 73 ~Dl~d~~~~~~~~~~~~~~~g~id~li~~Ag 103 (280)
T PLN02253 73 CDVTVEDDVSRAVDFTVDKFGTLDIMVNNAG 103 (280)
T ss_pred eecCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 7777766666555432223357899887764
No 174
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.88 E-value=0.03 Score=51.27 Aligned_cols=99 Identities=25% Similarity=0.258 Sum_probs=58.6
Q ss_pred EEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC--Ce--EEEEecc
Q psy2302 20 VIVV-GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD--VT--IEVHNFN 94 (292)
Q Consensus 20 V~vv-G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~--v~--v~~~~~~ 94 (292)
|+|. |+|++|++++++|++.+..+|.++|.|.-. --.+.+.+++..++ ++ +...-.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~------------------l~~l~~~l~~~~~~~~v~~~~~~vigD 62 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENK------------------LYELERELRSRFPDPKVRFEIVPVIGD 62 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHH------------------HHHHHHHCHHHC--TTCEEEEE--CTS
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhH------------------HHHHHHHHhhcccccCcccccCceeec
Confidence 5666 567899999999999999999999987643 34445556555444 43 2344567
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC---------CHHH--------HHHHHHHHHHhCCc
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD---------NFEA--------RMTINMACNQLGQT 141 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d---------~~~~--------r~~in~~~~~~~~p 141 (292)
+.+.+.+...++. .++|+|+-+.. ++.. ..-+-++|.++++.
T Consensus 63 vrd~~~l~~~~~~-----~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~ 121 (293)
T PF02719_consen 63 VRDKERLNRIFEE-----YKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVE 121 (293)
T ss_dssp CCHHHHHHHHTT-------T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-S
T ss_pred ccCHHHHHHHHhh-----cCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7665666665532 48999998873 3221 13455778888773
No 175
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.88 E-value=0.036 Score=51.00 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=29.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 479999999999999999999996 688888643
No 176
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.051 Score=50.62 Aligned_cols=89 Identities=22% Similarity=0.275 Sum_probs=59.9
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ |++|.++++.|++.|. ++.+++.+. .+.+.+.+.+++.. .++..+.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~------------------~~l~~~~~~l~~~g--~~~~~v~ 63 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGE------------------EGLEALAAEIRAAG--GEALAVV 63 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHcC--CcEEEEE
Confidence 356788999986 8999999999999996 577766421 24444555555443 4566667
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|++|.+..
T Consensus 64 ~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 64 ADVADAEAVQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred ecCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 7777766666554432223467899988764
No 177
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.87 E-value=0.049 Score=53.34 Aligned_cols=124 Identities=14% Similarity=0.107 Sum_probs=68.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~~~i~~ 97 (292)
.|.|||+|..|..+|.+|++.|. ++++.|.+.-....+... +.. .-+..-+...++....+ .|++-+......
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~-~~~-g~~~~~~~s~~e~v~~l~~~dvIil~v~~~--- 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAE-HAK-GKKIVGAYSIEEFVQSLERPRKIMLMVKAG--- 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhh-ccC-CCCceecCCHHHHHhhcCCCCEEEEECCCc---
Confidence 47899999999999999999997 688887654322221110 000 00000111122333222 345444433221
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
+.+++.+......+..-|+|||++. .+.......+.+.+.++.|+++++++
T Consensus 75 -~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsG 126 (467)
T TIGR00873 75 -APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSG 126 (467)
T ss_pred -HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 2222222211112345689999985 44444444567888899999999987
No 178
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.056 Score=47.61 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=57.0
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++|+|.|+ |++|.++++.|++.|. ++.+++.+. .+.+.+.+.+++.. .++..+..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 63 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDA------------------AGGEETVALIREAG--GEALFVAC 63 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CceEEEEc
Confidence 56789999986 7999999999999996 577766432 12333344454443 34666677
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.....+.+.|+||.+..
T Consensus 64 D~~~~~~i~~~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 64 DVTRDAEVKALVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 777656665544332222356798887754
No 179
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.87 E-value=0.067 Score=49.23 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=29.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D 50 (292)
.+|.|||+|.+|..++..|.+.|. .+++++|.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 589999999999999999999997 478888864
No 180
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.042 Score=53.72 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=32.1
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.++.++|+|+|.|++|-++|..|...|. +++++|..
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899999999999999999999997 59998854
No 181
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.85 E-value=0.06 Score=54.37 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=63.3
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
+.+|+|+|.|.+|..+++.|...|+ +++++|.|.- +++. +++. + ...+..+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~------------------~v~~----~~~~--g--~~v~~GDat 452 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS------------------AVNL----MRKY--G--YKVYYGDAT 452 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH------------------HHHH----HHhC--C--CeEEEeeCC
Confidence 4699999999999999999999998 5899998761 2222 2222 2 234455555
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG 139 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~ 139 (292)
+.+-+++. -.+++|.||.++|+.+.-..+-..+++++
T Consensus 453 ~~~~L~~a------gi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 453 QLELLRAA------GAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CHHHHHhc------CCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 53433321 23689999999999888777777777754
No 182
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.84 E-value=0.039 Score=50.81 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=28.3
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 79999999999999999999986 478888653
No 183
>PRK06196 oxidoreductase; Provisional
Probab=95.84 E-value=0.047 Score=50.14 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ |++|.++++.|++.|. ++.+++.+. .|.+.+.+.+.+ +..+.
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~------------------~~~~~~~~~l~~------v~~~~ 77 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRP------------------DVAREALAGIDG------VEVVM 77 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHhhh------CeEEE
Confidence 457788999987 8999999999999996 577766431 233333333321 44556
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+..+++.....+.+.|+||.+..
T Consensus 78 ~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg 108 (315)
T PRK06196 78 LDLADLESVRAFAERFLDSGRRIDILINNAG 108 (315)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 6676666665554432223357888887653
No 184
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.83 E-value=0.043 Score=49.37 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=55.1
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.||+|+|+ |.+|..++..+... ++.-..++|.+.- ...+ + ....+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~--~---------------------~~~~i~~----- 50 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG--Q---------------------GALGVAI----- 50 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc--c---------------------CCCCccc-----
Confidence 48999999 99999999988864 4555555665431 0100 0 0011111
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~ 145 (292)
..++++++ .++|+||+++ ++..-..+...|.++|+|++.+
T Consensus 51 --~~dl~~ll-------~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 51 --TDDLEAVL-------ADADVLIDFT-TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred --cCCHHHhc-------cCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 13455544 4689999988 4444466778899999998744
No 185
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.056 Score=47.38 Aligned_cols=88 Identities=20% Similarity=0.249 Sum_probs=54.1
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|..+++.|+..|. ++.++|.+. .+...+.+.+++.. .++..+..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 62 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINA------------------EGAERVAKQIVADG--GTAIAVQV 62 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence 56789999987 9999999999999995 577766432 12222333343322 23445566
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...+......+...|+||.+..
T Consensus 63 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (250)
T PRK07774 63 DVSDPDSAKAMADATVSAFGGIDYLVNNAA 92 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 666655554443322112246899987664
No 186
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.021 Score=50.58 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=30.0
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
+|++++|+|+|+ |++|..+++.|++.|. ++.++|.
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r 39 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDI 39 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 467899999998 9999999999999995 5777664
No 187
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.81 E-value=0.059 Score=47.71 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=56.7
Q ss_pred HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
-+|++++|+|.|+ |++|..+++.|+..|.. +.+++.+. +.+.+.+.+.+.. -++..+
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~-------------------~~~~~~~~~~~~~--~~~~~~ 68 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHGT-------------------NWDETRRLIEKEG--RKVTFV 68 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCc-------------------HHHHHHHHHHhcC--CceEEE
Confidence 3578899999976 79999999999999975 55655431 2233344444433 245566
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+...+++....+.+.|++|.+..
T Consensus 69 ~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 69 QVDLTKPESAEKVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 66777666665554432222356788887653
No 188
>KOG0024|consensus
Probab=95.80 E-value=0.16 Score=46.99 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=63.2
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
..++|+|.|+|++|-.....+-.+|..++.++|-.. +|.+.+++ + ..+.......-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~------------------~Rle~Ak~-~-----Ga~~~~~~~~~ 224 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA------------------NRLELAKK-F-----GATVTDPSSHK 224 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH------------------HHHHHHHH-h-----CCeEEeecccc
Confidence 478999999999999999999999999999988543 35555554 2 22222222111
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQ 140 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~ 140 (292)
.+.+.+.+.+++.--. ..+|++|+|+.-..+-..--.+.+..|+
T Consensus 225 ~~~~~~~~~v~~~~g~-~~~d~~~dCsG~~~~~~aai~a~r~gGt 268 (354)
T KOG0024|consen 225 SSPQELAELVEKALGK-KQPDVTFDCSGAEVTIRAAIKATRSGGT 268 (354)
T ss_pred ccHHHHHHHHHhhccc-cCCCeEEEccCchHHHHHHHHHhccCCE
Confidence 1234555555432211 2499999999876654444445555555
No 189
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.80 E-value=0.058 Score=48.74 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=26.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhC--CCeEEEEeCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCG--IGKLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~G--vg~i~lvD~D 50 (292)
.||.|||+|.+|..++..|.+.+ +.-..++|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 37999999999999999998864 4445566654
No 190
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.055 Score=47.03 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=54.7
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+.+++|+|+|+ |++|..+++.|+..|.. +.+++.+. .+...+.+.+.+. .+++.+..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~~------------------~~~~~~~~~l~~~---~~~~~~~~ 61 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITARDQ------------------KELEEAAAELNNK---GNVLGLAA 61 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCCH------------------HHHHHHHHHHhcc---CcEEEEEc
Confidence 34678999986 89999999999998874 77765321 1233333333322 34556666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.+++....+.++|+||.+..
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 62 DVRDEADVQRAVDAIVAAFGGLDVLIANAG 91 (237)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 676666666555432222357899997754
No 191
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.79 E-value=0.041 Score=48.60 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=55.5
Q ss_pred HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
..+++++|+|.|+ |++|..+++.|+..|.. +++++.+. .+.+.+.+.+ +..++..+
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~~------------------~~~~~~~~~~----~~~~~~~~ 63 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVSE------------------AALAATAARL----PGAKVTAT 63 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHH----hcCceEEE
Confidence 4578899999976 89999999999999974 78877432 1111222222 22355666
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+...++.....+.++|+||.+..
T Consensus 64 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 64 VADVADPAQVERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 66666656555444322222357899987664
No 192
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.79 E-value=0.062 Score=47.48 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=50.3
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+..||.|||+|.+|..++..|.+.|. .++.+++... ..|.+.+++ .. .+.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~-----------------~~~~~~~~~----~~-~~~~--~- 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN-----------------VEKLDQLQA----RY-NVST--T- 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCC-----------------HHHHHHHHH----Hc-CcEE--e-
Confidence 45789999999999999999998873 2344433210 123322222 11 1221 1
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC 135 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~ 135 (292)
.+..+.+ .++|+|+.|+.+...+..+.++.
T Consensus 58 ------~~~~~~~-------~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 ------TDWKQHV-------TSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred ------CChHHHH-------hcCCEEEEecCHHHHHHHHHHHH
Confidence 1233333 57999999999887776666654
No 193
>PRK08303 short chain dehydrogenase; Provisional
Probab=95.79 E-value=0.071 Score=49.04 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=61.9
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccccc-CCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELA-NMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~s-Nl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
.|++++++|.|+ +|+|.++++.|++.|. ++.+++.+.-... +..| ..+.+.+++.+... ..++..+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~---------~~~~~~~~~~l~~~--~~~~~~~ 72 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDR---------PETIEETAELVTAA--GGRGIAV 72 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccc---------cchHHHHHHHHHhc--CCceEEE
Confidence 367789999988 5899999999999996 6777775421100 0000 12445555556543 2345566
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
..++++.+.+..+++.....+.+.|++|.+.
T Consensus 73 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 73 QVDHLVPEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 7777776777666554333446789888765
No 194
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.79 E-value=0.07 Score=47.05 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=57.8
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.|.+++++|.|+ |++|..+++.|++.|. ++.++|.+. .+.+.+.+.+.... .++..+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~ 64 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITA------------------ERAELAVAKLRQEG--IKAHAAP 64 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCH------------------HHHHHHHHHHHhcC--CeEEEEe
Confidence 356788999975 7899999999999996 566655321 24444444454332 3455666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.+......+.+.|+||.+..
T Consensus 65 ~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 65 FNVTHKQEVEAAIEHIEKDIGPIDVLINNAG 95 (254)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 6777666666555432223457899988764
No 195
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.78 E-value=0.011 Score=47.62 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=45.3
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
..||.|||+|-+|..++..|.+.|.. +.-+ |. +....++++...-+...+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v--------------~s-------rs~~sa~~a~~~~~~~~~~------- 60 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHE-VVGV--------------YS-------RSPASAERAAAFIGAGAIL------- 60 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSE-EEEE--------------SS-------CHH-HHHHHHC--TT-----------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCe-EEEE--------------Ee-------CCccccccccccccccccc-------
Confidence 44899999999999999999999853 3322 11 1223445555555544332
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHH
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACN 136 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~ 136 (292)
++.+.+ .++|+|+.|+.+........+++.
T Consensus 61 ---~~~~~~-------~~aDlv~iavpDdaI~~va~~La~ 90 (127)
T PF10727_consen 61 ---DLEEIL-------RDADLVFIAVPDDAIAEVAEQLAQ 90 (127)
T ss_dssp ----TTGGG-------CC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred ---cccccc-------ccCCEEEEEechHHHHHHHHHHHH
Confidence 111222 689999999987766655555543
No 196
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.78 E-value=0.073 Score=48.80 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=60.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.|++++++|.|+ |++|..+++.|++.|. ++.+.|... ..+.+.+.+.++.. ..++..+.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~-----------------~~~~~~~~~~i~~~--g~~~~~~~ 68 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS-----------------ALDASDVLDEIRAA--GAKAVAVA 68 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc-----------------hhHHHHHHHHHHhc--CCeEEEEe
Confidence 577889999976 6899999999999997 566665421 12344455555543 34566777
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+..+++.... +.+.|+||.+.
T Consensus 69 ~Dv~d~~~~~~~~~~~~~-~g~iD~li~nA 97 (306)
T PRK07792 69 GDISQRATADELVATAVG-LGGLDIVVNNA 97 (306)
T ss_pred CCCCCHHHHHHHHHHHHH-hCCCCEEEECC
Confidence 778776666665544333 46789998765
No 197
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.78 E-value=0.04 Score=52.58 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=51.3
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCC------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCC-eE
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIG------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDV-TI 88 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v-~v 88 (292)
.||.|+|+ |.+|+.+|..|+..|+- .|.|+|.|. -+.|++.-+--|..-. |.. ++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~----------------~~~~a~g~a~DL~d~a~~~~~~v 108 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER----------------SKEALEGVAMELEDSLYPLLREV 108 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc----------------cchhhhHHHHHHHHhhhhhcCce
Confidence 48999999 99999999999999974 477776544 3345555555555543 332 12
Q ss_pred EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
. ++. .++.++ .+.|+||.+...
T Consensus 109 ~-----i~~-~~y~~~--------kdaDIVVitAG~ 130 (387)
T TIGR01757 109 S-----IGI-DPYEVF--------EDADWALLIGAK 130 (387)
T ss_pred E-----Eec-CCHHHh--------CCCCEEEECCCC
Confidence 1 111 334433 799999998754
No 198
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.76 E-value=0.053 Score=39.39 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=41.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE 89 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~ 89 (292)
||+|+|.|.+|.++|..|++.|. +++|++... .+. ......=...+.+++++. .+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~--------~~~--~~~~~~~~~~~~~~l~~~--gV~v~ 58 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD--------RLL--PGFDPDAAKILEEYLRKR--GVEVH 58 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS--------SSS--TTSSHHHHHHHHHHHHHT--TEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc--------hhh--hhcCHHHHHHHHHHHHHC--CCEEE
Confidence 68999999999999999999994 788888543 112 333344456666777766 34443
No 199
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.76 E-value=0.052 Score=48.74 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGI--GKLILFDY 49 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gv--g~i~lvD~ 49 (292)
.+|.|||+|.+|+.++..|.+.|. .++.++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 479999999999999999999884 35666664
No 200
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.75 E-value=0.036 Score=43.19 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=54.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhC--CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCG--IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~G--vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
||.|||+|..|...+..+.+.. +.-..++|.+. .+++.+++ .+ .+. .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~------------------~~~~~~~~----~~-~~~--~~----- 51 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP------------------ERAEAFAE----KY-GIP--VY----- 51 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH------------------HHHHHHHH----HT-TSE--EE-----
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH------------------HHHHHHHH----Hh-ccc--ch-----
Confidence 7999999999999999999873 33334556543 23333322 22 233 22
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW 142 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~ 142 (292)
.+++++++. .++|+|+.++.+. ....+-..+.+.|+++
T Consensus 52 --~~~~~ll~~-----~~~D~V~I~tp~~-~h~~~~~~~l~~g~~v 89 (120)
T PF01408_consen 52 --TDLEELLAD-----EDVDAVIIATPPS-SHAEIAKKALEAGKHV 89 (120)
T ss_dssp --SSHHHHHHH-----TTESEEEEESSGG-GHHHHHHHHHHTTSEE
T ss_pred --hHHHHHHHh-----hcCCEEEEecCCc-chHHHHHHHHHcCCEE
Confidence 234555532 4799999999884 3556666777777754
No 201
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.069 Score=47.01 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=57.1
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|.+++|+|.|+ |++|..+++.|+.-|. ++.++|.+. .+.+.+.+.+... ..++..+..
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~ 61 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTA------------------ERLDEVAAEIDDL--GRRALAVPT 61 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHHh--CCceEEEec
Confidence 45788999986 7999999999999997 677876421 1333334444432 234566677
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.....+.+.|+||.+..
T Consensus 62 D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 62 DITDEDQCANLVALALERFGRVDALVNNAF 91 (258)
T ss_pred CCCCHHHHHHHHHHHHHHcCCccEEEECCc
Confidence 777666665554432222357898887663
No 202
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.74 E-value=0.049 Score=50.18 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=29.1
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
..||.|+|+|.+|+.+|..|+..|. +++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999995 68888865
No 203
>PLN02427 UDP-apiose/xylose synthase
Probab=95.73 E-value=0.092 Score=49.67 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=62.5
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+++.+||+|.|+ |-+|+.+++.|...|--++..+|... +.+. ++.. .+. ....+ .++.+.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~---~~~~-~l~~---~~~----------~~~~~--~~~~~~ 71 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN---DKIK-HLLE---PDT----------VPWSG--RIQFHR 71 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc---hhhh-hhhc---ccc----------ccCCC--CeEEEE
Confidence 677889999985 99999999999998533677777421 0000 0000 000 00011 355556
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCC---------HHH--------HHHHHHHHHHhCCceeecCc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN---------FEA--------RMTINMACNQLGQTWFESGV 147 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~---------~~~--------r~~in~~~~~~~~p~i~~~~ 147 (292)
.++.+.+.+.+.+ .++|+||.+... +.. ...+-++|.+.+..+|+.+.
T Consensus 72 ~Dl~d~~~l~~~~-------~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS 136 (386)
T PLN02427 72 INIKHDSRLEGLI-------KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFST 136 (386)
T ss_pred cCCCChHHHHHHh-------hcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 6666655665555 568999876631 100 12234566777777776654
No 204
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.72 E-value=0.022 Score=52.88 Aligned_cols=90 Identities=19% Similarity=0.308 Sum_probs=54.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
.+|.|+|.|+.|+++|..|++.| ..+++...|.-....++.. ++-.+.-|++.+. ..+..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~----------------~~N~~yLp~i~lp---~~l~a 61 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINET----------------RENPKYLPGILLP---PNLKA 61 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhc----------------CcCccccCCccCC---ccccc
Confidence 58999999999999999999999 5555555443222111110 0001112232221 11111
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHH
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMA 134 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~ 134 (292)
..++.+.+ +++|+||.++.+...|..+.++
T Consensus 62 t~Dl~~a~-------~~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 62 TTDLAEAL-------DGADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred ccCHHHHH-------hcCCEEEEECChHHHHHHHHHH
Confidence 24555554 5799999999998888877775
No 205
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.71 E-value=0.076 Score=46.81 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=58.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++|+|.|+ |++|..+++.|+..|. ++.++|.+. .+.+.+.+.+++... ++..+.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~ 66 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNA------------------ATLEAAVAALRAAGG--AAEALA 66 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCH------------------HHHHHHHHHHHhcCC--ceEEEE
Confidence 467889999976 7899999999999997 688877643 133344455554332 455666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|.||.+..
T Consensus 67 ~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 67 FDIADEEAVAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 6676656665544432222356788887654
No 206
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.079 Score=46.61 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=56.1
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.|++++|+|.| .|++|.++++.|++.|. ++.++|.+. .+.+.+.+.+.+..+ ++..+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~ 63 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKL------------------DGCQAVADAIVAAGG--KAEALA 63 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--eEEEEE
Confidence 46678899997 67999999999999997 788877532 133344455544332 344455
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|+||.+..
T Consensus 64 ~D~~~~~~~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 64 CHIGEMEQIDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5666555555444332223356888886653
No 207
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.68 E-value=0.079 Score=46.52 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=56.2
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.| .|++|..+++.|+..|. ++.++|... .+.+.+.+.+.+. ..+++.+..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~ 60 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLND------------------EAAAAAAEALQKA--GGKAIGVAM 60 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHHHhc--CCcEEEEEc
Confidence 4568999998 59999999999999986 566655321 1333334444432 345666667
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.++.....+.+.|+||.+..
T Consensus 61 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 61 DVTDEEAINAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777666665544332222357899987763
No 208
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.076 Score=46.53 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=54.3
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.+. ..+.+.+.+.++.. ..++..+..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~-----------------~~~~~~~~~~l~~~--~~~~~~~~~ 63 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQK-----------------APRANKVVAEIEAA--GGRASAVGA 63 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc-----------------hHhHHHHHHHHHhc--CCceEEEEc
Confidence 56789999996 8999999999999986 455544211 01233344445443 234556666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++++.+.+...++.....+.+.|+||.+.
T Consensus 64 D~~~~~~~~~~~~~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 64 DLTDEESVAALMDTAREEFGGLDALVLNA 92 (248)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 77766666555433222234678877665
No 209
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.68 E-value=0.041 Score=51.59 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=26.6
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
..||+|+|+|.+|+.++..|++.| +.+++..+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~ 38 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRS 38 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCC
Confidence 358999999999999999999998 45665543
No 210
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.66 E-value=0.074 Score=48.95 Aligned_cols=88 Identities=24% Similarity=0.250 Sum_probs=55.4
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+.+++|+|.|+ |++|.++++.|++.| .++.+++.+. .|.+.+.+.+.. +..++..+..
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~------------------~~~~~~~~~l~~--~~~~~~~~~~ 62 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNL------------------KKAEAAAQELGI--PPDSYTIIHI 62 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECCH------------------HHHHHHHHHhhc--cCCceEEEEe
Confidence 35678899975 899999999999999 4677776432 244444444432 2334556666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.......+.|+||.+..
T Consensus 63 Dl~~~~~v~~~~~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 63 DLGDLDSVRRFVDDFRALGKPLDALVCNAA 92 (322)
T ss_pred cCCCHHHHHHHHHHHHHhCCCccEEEECCc
Confidence 777666665554332222346888887653
No 211
>PRK07680 late competence protein ComER; Validated
Probab=95.63 E-value=0.086 Score=47.64 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=27.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCC
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYD 50 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D 50 (292)
+|.|||+|.+|+.++..|.+.|. .+++++|.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~ 36 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT 36 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence 69999999999999999999984 467776653
No 212
>PRK12937 short chain dehydrogenase; Provisional
Probab=95.63 E-value=0.068 Score=46.62 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=56.6
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|..+++.|++.|.. +.++..+. .++.+.+.+.+.+.. .++..+..
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~ 62 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGS-----------------AAAADELVAEIEAAG--GRAIAVQA 62 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCC-----------------HHHHHHHHHHHHhcC--CeEEEEEC
Confidence 46788999985 99999999999999974 44433211 113334445555443 35566667
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.++.....+.+.|+||.+..
T Consensus 63 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (245)
T PRK12937 63 DVADAAAVTRLFDAAETAFGRIDVLVNNAG 92 (245)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777666666555432223357899888764
No 213
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.63 E-value=0.072 Score=48.90 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=67.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~~~i~~ 97 (292)
+|.+||+|.+|..++.+|++.|. ++++.|.+.-. .. .+ .+.|...+.-..+.+++. ++++-+...+..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~---~~--~~--~~~g~~~~~s~~~~~~~~~~advVi~~vp~~--- 70 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEA---VD--VA--GKLGITARHSLEELVSKLEAPRTIWVMVPAG--- 70 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHH---HH--HH--HHCCCeecCCHHHHHHhCCCCCEEEEEecCc---
Confidence 69999999999999999999986 57788865311 10 01 112222221222222221 134444443322
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
+.+.+.+..-.....+-.+||+++. .+.....+.+.+.++++.++++.+++
T Consensus 71 -~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G 122 (299)
T PRK12490 71 -EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSG 122 (299)
T ss_pred -hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCC
Confidence 1222222111111234468888854 45555667778888899999988876
No 214
>PRK06841 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.071 Score=46.94 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=53.6
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+. .+.... + +.. ..++..+.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~------------------~~~~~~-~---~~~-~~~~~~~~ 67 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSE------------------DVAEVA-A---QLL-GGNAKGLV 67 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHH-H---Hhh-CCceEEEE
Confidence 367899999986 9999999999999997 577766432 011111 1 111 23444566
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...+++....+.+.|+||.+..
T Consensus 68 ~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag 98 (255)
T PRK06841 68 CDVSDSQSVEAAVAAVISAFGRIDILVNSAG 98 (255)
T ss_pred ecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 6666656665544332222356898888763
No 215
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.61 E-value=0.069 Score=46.51 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=55.7
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|.+++|+|+|+ |++|..+++.|+..|...+.+++.+. .+.+.+.+.+.... -++..+..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 62 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE------------------EAAQELLEEIKEEG--GDAIAVKA 62 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH------------------HHHHHHHHHHHhcC--CeEEEEEC
Confidence 56789999986 89999999999999975433324321 23444455555433 34566677
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...+......+.+.|+||.+..
T Consensus 63 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (247)
T PRK05565 63 DVSSEEDVENLVEQIVEKFGKIDILVNNAG 92 (247)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 777656655444322112247899987664
No 216
>PRK06914 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.08 Score=47.41 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=53.1
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
++++++|.|+ |++|..+++.|+..|. ++.+++.+. .+.+...+.+.....+.+++.+..+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~D 62 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNP------------------EKQENLLSQATQLNLQQNIKVQQLD 62 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCCCceeEEecC
Confidence 4567888874 8999999999999986 466666432 1222333334443434456666667
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+.+.. +++....+.+.|+||.+..
T Consensus 63 ~~d~~~~~~-~~~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 63 VTDQNSIHN-FQLVLKEIGRIDLLVNNAG 90 (280)
T ss_pred CCCHHHHHH-HHHHHHhcCCeeEEEECCc
Confidence 766555544 3322112356788887753
No 217
>PRK12744 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.091 Score=46.48 Aligned_cols=92 Identities=15% Similarity=0.250 Sum_probs=57.0
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++|+|.| .|++|..+++.|+..|...+.+ +... .-...+.+.+.+.++.. ..++..+..
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i-~~~~--------------~~~~~~~~~~~~~l~~~--~~~~~~~~~ 68 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI-HYNS--------------AASKADAEETVAAVKAA--GAKAVAFQA 68 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE-ecCC--------------ccchHHHHHHHHHHHHh--CCcEEEEec
Confidence 5678899986 6799999999999999864433 3211 00112333444445443 245666777
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...+......+.+.|++|.+..
T Consensus 69 D~~~~~~~~~~~~~~~~~~~~id~li~~ag 98 (257)
T PRK12744 69 DLTTAAAVEKLFDDAKAAFGRPDIAINTVG 98 (257)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCEEEECCc
Confidence 777766766555432223357898887764
No 218
>KOG1201|consensus
Probab=95.57 E-value=0.086 Score=48.18 Aligned_cols=90 Identities=22% Similarity=0.334 Sum_probs=59.7
Q ss_pred HHHHHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302 11 NYEHIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE 89 (292)
Q Consensus 11 ~q~~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~ 89 (292)
.++.+++..|+|-|.| |+|.++|..+++-|. ++.+.|-..- =.+.-.+.++++ . ++.
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~------------------~~~etv~~~~~~--g-~~~ 89 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQ------------------GNEETVKEIRKI--G-EAK 89 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEecccc------------------chHHHHHHHHhc--C-cee
Confidence 4567788889999776 899999999999998 7888773221 111222333333 2 677
Q ss_pred EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.+..++++.+++....+.-...+++.|++|+..
T Consensus 90 ~y~cdis~~eei~~~a~~Vk~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 90 AYTCDISDREEIYRLAKKVKKEVGDVDILVNNA 122 (300)
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCceEEEecc
Confidence 777777776666654444344456778887654
No 219
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.56 E-value=0.066 Score=49.11 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=29.7
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
+..+|+|+|+|++|...++.+...|+..+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 5668999999999999999888899998887764
No 220
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.56 E-value=0.051 Score=48.37 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
++++++++|.|+ +|+|.++++.|++.|. ++.+.|.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r 41 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGF 41 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecC
Confidence 367889999996 7999999999999997 5777664
No 221
>PRK06500 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.065 Score=46.87 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=29.1
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r 38 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGR 38 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecC
Confidence 356789999986 8999999999999997 5777654
No 222
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=95.56 E-value=0.15 Score=43.12 Aligned_cols=87 Identities=28% Similarity=0.358 Sum_probs=58.3
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
.++|+| .|++|..+++.|+..|..+|.|+-... ...++.+..-+++++. .+++..+..++++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~---------------~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d 64 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG---------------APSAEAEAAIRELESA--GARVEYVQCDVTD 64 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG---------------GGSTTHHHHHHHHHHT--T-EEEEEE--TTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC---------------CccHHHHHHHHHHHhC--CCceeeeccCccC
Confidence 467885 999999999999999999999865432 2333444455566654 5688888888888
Q ss_pred hhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.+.+.+.+......+.+.+-||-+.
T Consensus 65 ~~~v~~~~~~~~~~~~~i~gVih~a 89 (181)
T PF08659_consen 65 PEAVAAALAQLRQRFGPIDGVIHAA 89 (181)
T ss_dssp HHHHHHHHHTSHTTSS-EEEEEE--
T ss_pred HHHHHHHHHHHHhccCCcceeeeee
Confidence 7888877766554445677777665
No 223
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.55 E-value=0.12 Score=46.62 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=61.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
.+|+|+|.-+-|..++..|...|..-+..+-.+ -|.. .+.. .+... .+...++.
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~----------------~~~~-------~~~~-~g~~~--v~~g~l~~ 54 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS----------------EGKH-------LYPI-HQALT--VHTGALDP 54 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC----------------Cccc-------cccc-cCCce--EEECCCCH
Confidence 379999997789999999999885433332211 1111 1111 11112 22334443
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHH--HHHHHHHHHhCCceee
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEAR--MTINMACNQLGQTWFE 144 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r--~~in~~~~~~~~p~i~ 144 (292)
+.+.+++.+ .++|+|||++..++.. ..+.++|.+.++|++-
T Consensus 55 -~~l~~~l~~-----~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 55 -QELREFLKR-----HSIDILVDATHPFAAQITTNATAVCKELGIPYVR 97 (256)
T ss_pred -HHHHHHHHh-----cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 556666643 5799999999998754 6688899999999973
No 224
>PRK06128 oxidoreductase; Provisional
Probab=95.55 E-value=0.078 Score=48.35 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
.+|++++|+|.|+ |++|..+++.|++.|.. +.+.+.+. + ..+.+...+.++.. ..++..+
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~~~~-------------~---~~~~~~~~~~~~~~--~~~~~~~ 111 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALNYLPE-------------E---EQDAAEVVQLIQAE--GRKAVAL 111 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEeCCc-------------c---hHHHHHHHHHHHHc--CCeEEEE
Confidence 3578899999976 89999999999999974 54443211 0 11223333444433 2355667
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+.++++.....+.+.|+||.+..
T Consensus 112 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg 143 (300)
T PRK06128 112 PGDLKDEAFCRQLVERAVKELGGLDILVNIAG 143 (300)
T ss_pred ecCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 77777766666555433223467899987654
No 225
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.55 E-value=0.086 Score=45.96 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=56.7
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.| .|++|..+++.|+..|. ++.+++.+. .+.+...+.+... ..++..+.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~ 62 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTE------------------ENLKAVAEEVEAY--GVKVVIAT 62 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHh--CCeEEEEE
Confidence 35678899997 55899999999999998 788887542 1222333344332 23566667
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+...++.....+.+.|+||.+.
T Consensus 63 ~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 92 (239)
T PRK07666 63 ADVSDYEEVTAAIEQLKNELGSIDILINNA 92 (239)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Confidence 777665666555433222235789988775
No 226
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.54 E-value=0.066 Score=46.91 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=56.5
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+.+++|+|.|+ |++|..++..|+..|...+.+.+. ...+.+.+.+.++..+ .++..+..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r------------------~~~~~~~~~~~~~~~~--~~~~~~~~ 61 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR------------------SRKAAEETAEEIEALG--RKALAVKA 61 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC------------------CHHHHHHHHHHHHhcC--CeEEEEEc
Confidence 34678999976 799999999999998654332221 1234555556665554 34566667
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...+++....+.+.|+||.+..
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 91 (250)
T PRK08063 62 NVGDVEKIKEMFAQIDEEFGRLDVFVNNAA 91 (250)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777766666555432222356899988763
No 227
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.029 Score=51.27 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=30.3
Q ss_pred HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD 48 (292)
.|++++|+|+|.|. +|..++.+|...|. ++++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~ 189 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILH 189 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence 68999999999999 99999999999884 677765
No 228
>PRK12367 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.095 Score=46.61 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=34.5
Q ss_pred HHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 10 ENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 10 ~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
=+|.++++++++|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3699999999999987 7899999999999996 57777754
No 229
>PRK08264 short chain dehydrogenase; Validated
Probab=95.53 E-value=0.098 Score=45.52 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=31.2
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++++|+|.|+ |++|..+++.|++.|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 56789999985 9999999999999998788888754
No 230
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.53 E-value=0.079 Score=46.79 Aligned_cols=84 Identities=14% Similarity=0.329 Sum_probs=51.6
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+.+++|+|.|+ |++|..+++.|++.|. ++.++|.+.- +.+.+.+.+ .. ++.....
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~------------------~~~~~~~~~---~~--~~~~~~~ 59 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPA------------------RARLAALEI---GP--AAIAVSL 59 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHH------------------HHHHHHHHh---CC--ceEEEEc
Confidence 56788999986 9999999999999996 5777764321 222222222 21 2445555
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++++.+.+...++.....+.+.|++|.+.
T Consensus 60 D~~~~~~~~~~~~~~~~~~~~id~li~~a 88 (257)
T PRK07067 60 DVTRQDSIDRIVAAAVERFGGIDILFNNA 88 (257)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 66655555554433222235678888765
No 231
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.095 Score=46.63 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=57.3
Q ss_pred HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|.+ ++|..+++.|+..|. ++.++|.+. .+.+.+.+.++... .++..+..
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~~ 66 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTE------------------SQLDEVAEQIRAAG--RRAHVVAA 66 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence 567889999866 799999999999998 788877542 23334444454433 34555666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.....+.+.|+||.+..
T Consensus 67 D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 67 DLAHPEATAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 676656655444322222357899998654
No 232
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.53 E-value=0.092 Score=47.43 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=52.6
Q ss_pred HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
|+++.|+|.|+ +|+|.++|+.|++.|. ++.+.|.+. + ...+.+.+.+ +... . ..+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~-------~--------~~~~~~~~~~---~~~~--~-~~~ 60 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNE-------A--------LKKRVEPIAQ---ELGS--D-YVY 60 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCH-------H--------HHHHHHHHHH---hcCC--c-eEE
Confidence 45788999998 4999999999999997 577766421 0 0011222211 2221 1 345
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+..+++.....+.+.|++|.+..
T Consensus 61 ~~Dv~d~~~v~~~~~~i~~~~g~iDilVnnAG 92 (274)
T PRK08415 61 ELDVSKPEHFKSLAESLKKDLGKIDFIVHSVA 92 (274)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 56677666666555443333467888887754
No 233
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.52 E-value=0.2 Score=46.54 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=25.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
++|+|.|+ |-+|+++++.|...|=-++..+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 47999997 999999999999763236777764
No 234
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.52 E-value=0.072 Score=49.37 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=54.8
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+...++|+|+|+|..|...+..+.. .++.++++++.+ ..|++.+++++++.. ..+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs------------------~~~a~~~a~~~~~~g--~~~~~~- 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD------------------PAKAEALAAELRAQG--FDAEVV- 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC------------------HHHHHHHHHHHHhcC--CceEEe-
Confidence 3456899999999999999987765 678899997643 347777777776542 223322
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF 125 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~ 125 (292)
++..+.+ .++|+|+.||...
T Consensus 181 ------~~~~~av-------~~aDIVi~aT~s~ 200 (314)
T PRK06141 181 ------TDLEAAV-------RQADIISCATLST 200 (314)
T ss_pred ------CCHHHHH-------hcCCEEEEeeCCC
Confidence 2333333 6899999998864
No 235
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.52 E-value=0.05 Score=49.97 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=65.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHh-hCCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQN-INPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~-~np~v~v~~~~~~i~~ 97 (292)
+|.|||+|..|+.++.+|++.|. ++.+.|.+.-...-+... |...+....+.... ..+++-+...+.....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~ 73 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED-------RTTGVANLRELSQRLSAPRVVWVMVPHGIVD 73 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-------CCcccCCHHHHHhhcCCCCEEEEEcCchHHH
Confidence 69999999999999999999985 577777654221111110 11111111111111 1244444443332111
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceeecCccc
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
+-++.+.. .+.+-++||+++.. +.....+.+.+.+.++.++++++++
T Consensus 74 -~v~~~l~~----~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 74 -AVLEELAP----TLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred -HHHHHHHh----hCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 22222221 12445799998765 3444555667778899999998875
No 236
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.52 E-value=0.086 Score=50.64 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=32.4
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+.+++|+|+|+|.+|..+++.+...|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 679999999999999999999999998 588888665
No 237
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.51 E-value=0.091 Score=45.96 Aligned_cols=88 Identities=23% Similarity=0.388 Sum_probs=55.5
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++++|.|+ |++|..+++.|++.|. ++.++|.+. .+.+.+.+.+.+... ++..+..
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~ 59 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNR------------------EAAEKVAADIRAKGG--NAQAFAC 59 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCH------------------HHHHHHHHHHHhcCC--cEEEEEc
Confidence 46789999985 8899999999999886 577765432 233444455544333 3555566
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.+..-...+.+.|+||.+..
T Consensus 60 d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 60 DITDRDSVDTAVAAAEQALGPVDVLVNNAG 89 (250)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 666555555544322222356898887763
No 238
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.51 E-value=0.048 Score=49.15 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=52.8
Q ss_pred HHHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302 13 EHIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE 89 (292)
Q Consensus 13 ~~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~ 89 (292)
.++++++++|.|+ +|+|.++|+.|++.|. ++.+++.+. . -..+.+.+++.+ .. ..
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~---~------------~~~~~~~l~~~~----~~--~~ 63 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD---A------------LKKRVEPLAAEL----GA--FV 63 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch---H------------HHHHHHHHHHhc----CC--ce
Confidence 3677889999998 5999999999999997 566654210 0 011222222221 11 23
Q ss_pred EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.+..++++.+.++.+++.....+...|++|.+.
T Consensus 64 ~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nA 96 (272)
T PRK08159 64 AGHCDVTDEASIDAVFETLEKKWGKLDFVVHAI 96 (272)
T ss_pred EEecCCCCHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 355666666666655544333345678888764
No 239
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.51 E-value=0.092 Score=47.03 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=21.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI 41 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv 41 (292)
+|.|||+|.+|..++..|.+.|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999885
No 240
>PRK07024 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.085 Score=46.72 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=53.2
Q ss_pred cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.++|+|.| .|++|..+++.|++.|. ++.++|.+. .+.+.+.+.+... . ++..+..++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~--~-~~~~~~~Dl 59 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRT------------------DALQAFAARLPKA--A-RVSVYAADV 59 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHhcccC--C-eeEEEEcCC
Confidence 35788886 78999999999999997 688877542 1222233333211 1 566677777
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++.+.+.+.++.....+...|++|.+..
T Consensus 60 ~~~~~i~~~~~~~~~~~g~id~lv~~ag 87 (257)
T PRK07024 60 RDADALAAAAADFIAAHGLPDVVIANAG 87 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 7666665544322212345788887653
No 241
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.059 Score=47.00 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.+++++++|.|+ |++|..+++.|++.|. ++.+++.
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 366789999998 7999999999999997 5887774
No 242
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.098 Score=46.11 Aligned_cols=85 Identities=18% Similarity=0.288 Sum_probs=54.7
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
+++++|.|+ |++|..+++.|++.|. ++.++|.+. .+.+.+++.+.+.. -++..+..++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~D~ 59 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTK------------------EKLEEAKLEIEQFP--GQVLTVQMDV 59 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEecC
Confidence 357888876 6799999999999998 788877542 13333444444432 2455666677
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++.+.+...+++....+.+.|+||.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 60 RNPEDVQKMVEQIDEKFGRIDALINNA 86 (252)
T ss_pred CCHHHHHHHHHHHHHHhCCccEEEECC
Confidence 766666655443222235789988765
No 243
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.48 E-value=0.037 Score=51.17 Aligned_cols=30 Identities=23% Similarity=0.628 Sum_probs=26.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD 48 (292)
.||+|+|+|++|+..+..|+++| ..++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~ 30 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV 30 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence 48999999999999999999999 7666644
No 244
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.48 E-value=0.052 Score=48.47 Aligned_cols=88 Identities=9% Similarity=0.075 Sum_probs=51.4
Q ss_pred HHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302 14 HIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV 90 (292)
Q Consensus 14 ~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~ 90 (292)
+|++++++|.|+ +|+|.++|+.|++.|. ++.+.+.+ + |.....+.+.+.... ...
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~--~-----------------~~~~~~~~~~~~~~~--~~~ 60 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVV--D-----------------KLEERVRKMAAELDS--ELV 60 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCc--H-----------------HHHHHHHHHHhccCC--ceE
Confidence 477889999994 5999999999999997 45554321 0 111111112211112 234
Q ss_pred EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+..++++.+.++.+++.....+.+.|++|.+..
T Consensus 61 ~~~Dv~~~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (261)
T PRK08690 61 FRCDVASDDEINQVFADLGKHWDGLDGLVHSIG 93 (261)
T ss_pred EECCCCCHHHHHHHHHHHHHHhCCCcEEEECCc
Confidence 556666666666555433323457888887753
No 245
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.47 E-value=0.058 Score=47.91 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=28.1
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
|++++++|.|+ |++|..+++.|++.|. ++.++|.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 37 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDK 37 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999986 6899999999999997 4667653
No 246
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.47 E-value=0.14 Score=40.33 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=55.5
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 19 TVIVVG-VGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 19 ~V~vvG-~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
||.|+| .|-+|..+++.|...-- ..+.++.... ..|++=..... .....-.+...+ ..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~--------------~~g~~~~~~~~----~~~~~~~~~~~~--~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR--------------SAGKPLSEVFP----HPKGFEDLSVED--AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT--------------TTTSBHHHTTG----GGTTTEEEBEEE--TS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc--------------ccCCeeehhcc----ccccccceeEee--cc
Confidence 699999 99999999999998432 2333333222 24442222111 111111222222 11
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCc
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV 147 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~ 147 (292)
. +.+ .+.|+||.|+++...+.+...+ .+.|+++|+.+.
T Consensus 61 ~-~~~-----------~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~ 98 (121)
T PF01118_consen 61 P-EEL-----------SDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSG 98 (121)
T ss_dssp G-HHH-----------TTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSS
T ss_pred h-hHh-----------hcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCH
Confidence 1 222 6899999999998777766655 788998888644
No 247
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.47 E-value=0.094 Score=46.51 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=61.5
Q ss_pred HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302 14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV 90 (292)
Q Consensus 14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~ 90 (292)
+|++++|+|.|++ |+|.++++.|+..|. ++.+.+-.. ..|.... .....+...+.+.+++. ..++..
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~--g~~~~~ 72 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTYWTA-----YDKEMPW--GVDQDEQIQLQEELLKN--GVKVSS 72 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeccc-----ccccccc--cccHHHHHHHHHHHHhc--CCeEEE
Confidence 5788999999995 899999999999997 466654211 1111000 00112233444555543 346667
Q ss_pred EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+..++++.+.+.+.+......+.+.|+||.+..
T Consensus 73 ~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag 105 (256)
T PRK12859 73 MELDLTQNDAPKELLNKVTEQLGYPHILVNNAA 105 (256)
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 777777767776655433323456899997763
No 248
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.46 E-value=0.038 Score=51.04 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.||.|+|+|-+|+.+|..|+..|.+++.++|-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999996
No 249
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.45 E-value=0.078 Score=47.20 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=52.9
Q ss_pred HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302 14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV 90 (292)
Q Consensus 14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~ 90 (292)
+++++.++|.|++ |+|.++|+.|++.|. ++.++|.+. + ...+.+.+++.+ +. +..
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~--------------~-~~~~~~~~~~~~----~~--~~~ 64 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLND--------------K-ARPYVEPLAEEL----DA--PIF 64 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCh--------------h-hHHHHHHHHHhh----cc--ceE
Confidence 4678899999985 899999999999996 577766431 0 001222222222 12 234
Q ss_pred EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+..++++.+.+..+++.....+.+.|++|.+.
T Consensus 65 ~~~D~~~~~~v~~~~~~~~~~~g~ld~lv~nA 96 (258)
T PRK07533 65 LPLDVREPGQLEAVFARIAEEWGRLDFLLHSI 96 (258)
T ss_pred EecCcCCHHHHHHHHHHHHHHcCCCCEEEEcC
Confidence 55666665666555443322345788888765
No 250
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.45 E-value=0.1 Score=48.61 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred cCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.++|+|+|+|+.|...+..|.. .++.++++++.+. .|++.+++++++.. .+++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~------------------~~a~~l~~~~~~~~-g~~v~~~---- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDA------------------AKAEAYAADLRAEL-GIPVTVA---- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCH------------------HHHHHHHHHHhhcc-CceEEEe----
Confidence 4689999999999999999985 5789999976433 37777777776433 2443322
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF 125 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~ 125 (292)
+++++.+ .++|+|+.|+...
T Consensus 189 ---~d~~~al-------~~aDiVi~aT~s~ 208 (330)
T PRK08291 189 ---RDVHEAV-------AGADIIVTTTPSE 208 (330)
T ss_pred ---CCHHHHH-------ccCCEEEEeeCCC
Confidence 3344444 6799999998763
No 251
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.45 E-value=0.13 Score=47.93 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=32.0
Q ss_pred HHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302 12 YEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 12 q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD 48 (292)
.+.|++++|.|||.|.+|..+|++|..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence 478999999999999999999999999998 465655
No 252
>PRK05717 oxidoreductase; Validated
Probab=95.44 E-value=0.079 Score=46.81 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.+++++|+|.|. |++|..+++.|++.|. ++.++|.
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~ 42 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADL 42 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcC
Confidence 456788999985 8999999999999995 6777764
No 253
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.44 E-value=0.038 Score=51.47 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=30.6
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDY 49 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~ 49 (292)
++-.||+|+|+ |.+|+.++..|+..|. .+|.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 45669999999 9999999999997776 57999996
No 254
>KOG1205|consensus
Probab=95.40 E-value=0.095 Score=47.82 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=66.7
Q ss_pred HHHHHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302 11 NYEHIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE 89 (292)
Q Consensus 11 ~q~~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~ 89 (292)
..+++.++.|+|-|+- |+|-++|+.|++.|..-+.++=. ..+-+-.++.+++..+.-++.
T Consensus 6 ~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~-------------------~rrl~~v~~~l~~~~~~~~v~ 66 (282)
T KOG1205|consen 6 FMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARR-------------------ARRLERVAEELRKLGSLEKVL 66 (282)
T ss_pred cHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehh-------------------hhhHHHHHHHHHHhCCcCccE
Confidence 4578999999999985 89999999999999875544210 123445555666655444788
Q ss_pred EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
....++++.+.....++.....+.+.|++|+-.
T Consensus 67 ~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNA 99 (282)
T KOG1205|consen 67 VLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNA 99 (282)
T ss_pred EEeCccCCHHHHHHHHHHHHHhcCCCCEEEecC
Confidence 888889887777766544444568999988654
No 255
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.40 E-value=0.05 Score=53.09 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=33.2
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
.|.+++|+|+|.|.+|..+|+.|...|. +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 5789999999999999999999999998 688887654
No 256
>PRK08226 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.081 Score=46.85 Aligned_cols=88 Identities=20% Similarity=0.296 Sum_probs=54.5
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++++|.| .|++|..+++.|+..|.. +.+++.+. +.....+.+.+. ..++....
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~-------------------~~~~~~~~~~~~--~~~~~~~~ 60 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDISP-------------------EIEKLADELCGR--GHRCTAVV 60 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCH-------------------HHHHHHHHHHHh--CCceEEEE
Confidence 46678899996 678999999999999974 77776421 112222333322 33455666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+..++......+.+.|+||.+..
T Consensus 61 ~Dl~~~~~v~~~~~~~~~~~~~id~vi~~ag 91 (263)
T PRK08226 61 ADVRDPASVAAAIKRAKEKEGRIDILVNNAG 91 (263)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6776656665544332222356788887653
No 257
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.38 E-value=0.29 Score=48.96 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=51.7
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-------CCC
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-------PDV 86 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-------p~v 86 (292)
..+++|+|.|+ |++|..+++.|++.|. ++++++.+. .|.+.+.+.+.++. +.-
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~------------------ekl~~l~~~l~~~~L~~~Ga~~~~ 138 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA------------------QRAESLVQSVKQMKLDVEGTQPVE 138 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHhhhhccccccccccC
Confidence 35667888886 8999999999999986 466554332 12333333332211 112
Q ss_pred eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+..++++.+.+.+.+ .++|+||.+..
T Consensus 139 ~v~iV~gDLtD~esI~~aL-------ggiDiVVn~AG 168 (576)
T PLN03209 139 KLEIVECDLEKPDQIGPAL-------GNASVVICCIG 168 (576)
T ss_pred ceEEEEecCCCHHHHHHHh-------cCCCEEEEccc
Confidence 3556666776655555544 68999998864
No 258
>PRK06720 hypothetical protein; Provisional
Probab=95.38 E-value=0.15 Score=42.95 Aligned_cols=36 Identities=39% Similarity=0.603 Sum_probs=29.8
Q ss_pred HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++++.++|.|.+ |+|..++..|+..| .++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence 4678889999875 69999999999999 468887754
No 259
>PRK08278 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.11 Score=46.69 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=59.5
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++++|.|+ |++|..+++.|+..|. ++.++|...-.. ... ..+.+.+++.++.. ..++..+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~----------~~~-~~~l~~~~~~~~~~--~~~~~~~~~ 69 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPH----------PKL-PGTIHTAAEEIEAA--GGQALPLVG 69 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccc----------cch-hhHHHHHHHHHHhc--CCceEEEEe
Confidence 56788999985 8999999999999997 677777542110 000 11233444555543 235666777
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...+......+.+.|+||.+..
T Consensus 70 D~~~~~~i~~~~~~~~~~~g~id~li~~ag 99 (273)
T PRK08278 70 DVRDEDQVAAAVAKAVERFGGIDICVNNAS 99 (273)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 777766666555432222357899987754
No 260
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.37 E-value=0.11 Score=45.80 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=59.0
Q ss_pred HhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 15 IRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 15 L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
|+.++|+|.|++ ++|..+++.|+..|. ++.+++....+.. .. .+-.......+.+.+... ..+++.+
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~~~~~-~~------~~~~~~~~~~~~~~~~~~--~~~~~~~ 72 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSPYDKT-MP------WGMHDKEPVLLKEEIESY--GVRCEHM 72 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCccccc-cc------cccchhhHHHHHHHHHhc--CCeEEEE
Confidence 567789999985 799999999999996 7888775432210 00 000111122233434332 3356677
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
..++++.+.+...++.....+...|+||.+.
T Consensus 73 ~~D~~~~~~~~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 73 EIDLSQPYAPNRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred ECCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 7777766665554443332345789998876
No 261
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.35 E-value=0.1 Score=46.20 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=54.4
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
+|+|.|+ ||+|..+++.|+..|. ++.++|.+. .+.+.+.+.+++. . ++..+..++++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~-~--~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNE------------------ENLEKALKELKEY-G--EVYAVKADLSD 59 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhc-C--CceEEEcCCCC
Confidence 6888875 7899999999999997 577766431 2334444445432 2 45566777776
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.+.+.++++.....+.+.|+||.+..
T Consensus 60 ~~~~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 60 KDDLKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 66666655433223467899987754
No 262
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.0053 Score=55.99 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=29.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 588888764
No 263
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.34 E-value=0.11 Score=45.69 Aligned_cols=84 Identities=23% Similarity=0.355 Sum_probs=53.1
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
+++++|.|+ |++|..+++.|+..|. ++.++|.+. .+.+.+.+.+ +..+++.+..++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~------------------~~~~~~~~~~----~~~~~~~~~~D~ 58 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDA------------------AALAAFADAL----GDARFVPVACDL 58 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh----cCCceEEEEecC
Confidence 468999987 8999999999999985 688876432 1222233333 234566667777
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.+.+.+...+......+.+.|+||.+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag 86 (257)
T PRK07074 59 TDAASLAAALANAAAERGPVDVLVANAG 86 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6666655444322112246888888763
No 264
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.33 E-value=0.093 Score=49.03 Aligned_cols=36 Identities=25% Similarity=0.570 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 6889999999999999999999999886 57777753
No 265
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.31 E-value=0.13 Score=51.53 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=51.7
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
+.||+|+|+|.+|..+++.|...|. +++++|.|.- |++. +++. .......+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~------------------~~~~----~~~~----g~~~i~GD~~ 469 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT------------------RVDE----LRER----GIRAVLGNAA 469 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH------------------HHHH----HHHC----CCeEEEcCCC
Confidence 4799999999999999999999996 5899998761 2222 2222 2334455555
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHH
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEA 127 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~ 127 (292)
+++-+++. ..+++|.|+.++++...
T Consensus 470 ~~~~L~~a------~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 470 NEEIMQLA------HLDCARWLLLTIPNGYE 494 (558)
T ss_pred CHHHHHhc------CccccCEEEEEcCChHH
Confidence 53333321 13689988877766443
No 266
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.31 E-value=0.031 Score=51.07 Aligned_cols=33 Identities=33% Similarity=0.598 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999996 599999664
No 267
>PRK06182 short chain dehydrogenase; Validated
Probab=95.30 E-value=0.061 Score=48.12 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=49.0
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
++++|+|.|+ |++|.++++.|+..|. ++.+++.+. .|.+. +... .++.+..+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~l~~----~~~~----~~~~~~~D 54 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRV------------------DKMED----LASL----GVHPLSLD 54 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHH----HHhC----CCeEEEee
Confidence 4678999986 8999999999999886 466655332 01111 1111 23445556
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+.+...++.....+.+.|+||.+..
T Consensus 55 v~~~~~~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 55 VTDEASIKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 66656665544322222357899988764
No 268
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.29 E-value=0.14 Score=47.95 Aligned_cols=22 Identities=36% Similarity=0.726 Sum_probs=19.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHh
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRC 39 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~ 39 (292)
-+|.|+|+|.+|+.+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999999865
No 269
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.28 E-value=0.04 Score=49.22 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=49.8
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|..+++.|+..|.. +.+++.+. .+.+.+.+.+. ++..+..
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~------------------~~~~~~~~~~~------~~~~~~~ 57 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLDE------------------ALAKETAAELG------LVVGGPL 57 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCH------------------HHHHHHHHHhc------cceEEEc
Confidence 45678999987 89999999999999975 66665432 12222222221 2344555
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++++.+.+...++.-...+.+.|++|.+.
T Consensus 58 D~~~~~~~~~~~~~~~~~~~~id~li~~a 86 (273)
T PRK07825 58 DVTDPASFAAFLDAVEADLGPIDVLVNNA 86 (273)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 66655555444433222235678888765
No 270
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.28 E-value=0.1 Score=53.49 Aligned_cols=90 Identities=23% Similarity=0.265 Sum_probs=58.9
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++|+|.|+ |++|.++++.|+..|. ++.++|.+. .+.+.+.+.+.+....-++..+..
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~------------------~~~~~~~~~l~~~~~~~~~~~v~~ 472 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNL------------------EAAEAVAAEINGQFGAGRAVALKM 472 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCH------------------HHHHHHHHHHHhhcCCCcEEEEEC
Confidence 35678888876 8999999999999997 677777432 133344444544333334556677
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.....+.+.|+||.+..
T Consensus 473 Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG 502 (676)
T TIGR02632 473 DVTDEQAVKAAFADVALAYGGVDIVVNNAG 502 (676)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 777766666555433333467899887764
No 271
>PRK06114 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.12 Score=45.56 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=57.3
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++++|.| .|++|.++++.|+..|. ++.++|.+. ..+.+.+.+.++... .++..+.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~-----------------~~~~~~~~~~l~~~~--~~~~~~~ 64 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRT-----------------DDGLAETAEHIEAAG--RRAIQIA 64 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc-----------------chHHHHHHHHHHhcC--CceEEEE
Confidence 46778888886 56999999999999997 566766431 112333444555443 2445566
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.++.....+.+.|+||.+..
T Consensus 65 ~D~~~~~~i~~~~~~~~~~~g~id~li~~ag 95 (254)
T PRK06114 65 ADVTSKADLRAAVARTEAELGALTLAVNAAG 95 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6676656666555433333457798887764
No 272
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.26 E-value=0.19 Score=45.59 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=50.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
+|.|||+|.+|+.++..|.+.|. .++.++|.+.- .|.+ .+....+.+.+.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~-----------------~~~~----~l~~~~~~~~~~------ 55 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN-----------------EHFN----QLYDKYPTVELA------ 55 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH-----------------HHHH----HHHHHcCCeEEe------
Confidence 69999999999999999999883 46777665320 1211 122222222221
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC 135 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~ 135 (292)
.+..+.+ .++|+||.|+-....+..+.++.
T Consensus 56 ---~~~~e~~-------~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 56 ---DNEAEIF-------TKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred ---CCHHHHH-------hhCCEEEEecCHHHHHHHHHHHH
Confidence 1222222 57899999998877777666654
No 273
>PRK05855 short chain dehydrogenase; Validated
Probab=95.25 E-value=0.079 Score=52.30 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=62.1
Q ss_pred HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
..+++.+++|+|+ ||+|..+++.|+..|.. +.++|.+ ..+.+.+.+.+++... ++..+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~------------------~~~~~~~~~~~~~~~~--~~~~~ 369 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDID------------------EAAAERTAELIRAAGA--VAHAY 369 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCC------------------HHHHHHHHHHHHhcCC--eEEEE
Confidence 4567889999986 99999999999999985 7776632 1355555556655433 56677
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+.++++.....+...|++|.+..
T Consensus 370 ~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag 401 (582)
T PRK05855 370 RVDVSDADAMEAFAEWVRAEHGVPDIVVNNAG 401 (582)
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCCcEEEECCc
Confidence 77887766666555432223356899988763
No 274
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=95.25 E-value=0.099 Score=45.74 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=52.3
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+++.++|.|+ |++|..+++.|++.|...+.+.+.+. .+.....+.+... ..++..+..+
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~------------------~~~~~~~~~~~~~--~~~~~~~~~D 61 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS------------------PRRVKWLEDQKAL--GFDFIASEGN 61 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh------------------HHHHHHHHHHHhc--CCcEEEEEcC
Confidence 4677888875 99999999999999975433322111 1112222233332 3455566667
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+.+.+.+++....+.+.|+||.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~li~~ag 90 (246)
T PRK12938 62 VGDWDSTKAAFDKVKAEVGEIDVLVNNAG 90 (246)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 77666665554332222357899988764
No 275
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.24 E-value=0.18 Score=48.40 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=33.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR 59 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R 59 (292)
+|.|||+|-+|..+|..|+..|. +++++|.+.-....+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhc
Confidence 69999999999999999999997 58899987654444554
No 276
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.23 E-value=0.16 Score=45.93 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=23.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-CCCeEEEEe
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRC-GIGKLILFD 48 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD 48 (292)
.||.|+|+|.+|..+++.|... ++.-..+++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~ 33 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIV 33 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEE
Confidence 3899999999999999999876 343333443
No 277
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.23 E-value=0.14 Score=47.44 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=58.1
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.+++++|.|+|+|.+|..+|+.|...|+ ++..+|...-. . +.+. ...
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~------------~-----------------~~~~--~~~- 179 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKS------------W-----------------PGVQ--SFA- 179 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCC------------C-----------------CCce--eec-
Confidence 5788999999999999999999999997 46666642100 0 0110 000
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHH---hCCceeecC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQ---LGQTWFESG 146 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~---~~~p~i~~~ 146 (292)
....+++++ .++|+|+.+.. +.+++..+|+-..+ .+.-+|+.+
T Consensus 180 ---~~~~l~e~l-------~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 180 ---GREELSAFL-------SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred ---ccccHHHHH-------hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 013455555 68999988875 56788888764333 244455543
No 278
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.21 E-value=0.097 Score=48.31 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=55.9
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+...++|+|+|+|..|...++.+.. .++.++.+.|.+ ..|++.+++++++.. +.+. .
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~------------------~~~a~~~a~~~~~~~--~~~~-~- 179 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT------------------AASAAAFCAHARALG--PTAE-P- 179 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC------------------HHHHHHHHHHHHhcC--CeeE-E-
Confidence 3456899999999999999999975 578889987754 347888888876542 2222 1
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF 125 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~ 125 (292)
++.++.+ .++|+|+.||.+.
T Consensus 180 ------~~~~~av-------~~aDiVitaT~s~ 199 (304)
T PRK07340 180 ------LDGEAIP-------EAVDLVVTATTSR 199 (304)
T ss_pred ------CCHHHHh-------hcCCEEEEccCCC
Confidence 2333333 6899999999874
No 279
>PRK08628 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.12 Score=45.51 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=55.5
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.|++++++|.| .|++|..+++.|+..|.. +.+++.+. ++. .+.+.+++... ++..+.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~------------------~~~-~~~~~~~~~~~--~~~~~~ 61 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSA------------------PDD-EFAEELRALQP--RAEFVQ 61 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCCh------------------hhH-HHHHHHHhcCC--ceEEEE
Confidence 57888999998 578999999999999975 55554321 111 12233444333 455667
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|+||.+..
T Consensus 62 ~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (258)
T PRK08628 62 VDLTDDAQCRDAVEQTVAKFGRIDGLVNNAG 92 (258)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 7777666665554432222356888888764
No 280
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.20 E-value=0.12 Score=44.79 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=53.2
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.+. .+.+.+.+.+... -+++.+..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~---~~~~~~~~ 60 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNE------------------NKLKRMKKTLSKY---GNIHYVVG 60 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc---CCeEEEEC
Confidence 56789999987 6799999999999997 577765421 1223333333321 13555666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.....+...|.++.+..
T Consensus 61 Dl~~~~~~~~~~~~~~~~~~~id~ii~~ag 90 (238)
T PRK05786 61 DVSSTESARNVIEKAAKVLNAIDGLVVTVG 90 (238)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 666655555544322212346788877664
No 281
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.19 E-value=0.16 Score=46.02 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=26.0
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRC--GIGKLILFDYD 50 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~--Gvg~i~lvD~D 50 (292)
+..||.|||+|.+|..++..|... |+.-..+.|.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 456899999999999999999874 44333355644
No 282
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.16 E-value=0.1 Score=46.29 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=50.8
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|.++++.|+..|.. +.++|.+. .+.+.+.+.+ . -++..+..
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~---~--~~~~~~~~ 59 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGAR-VAVLERSA------------------EKLASLRQRF---G--DHVLVVEG 59 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHh---C--CcceEEEc
Confidence 56788999986 68999999999999974 77776432 1222222221 1 13344555
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...+++....+.+.|++|.+..
T Consensus 60 D~~~~~~~~~~~~~~~~~~g~id~li~~ag 89 (263)
T PRK06200 60 DVTSYADNQRAVDQTVDAFGKLDCFVGNAG 89 (263)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 565545555444332222356788877653
No 283
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.15 E-value=0.062 Score=49.81 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=27.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+|.|+|+|++|+.++..|++.| .++++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCH
Confidence 6999999999999999999998 4578887643
No 284
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.15 E-value=0.12 Score=46.02 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=50.6
Q ss_pred HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302 14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV 90 (292)
Q Consensus 14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~ 90 (292)
+++++.++|.|++ |+|.++|+.|++.|. ++.+.|.+. +.+...+.+.+.... . ..
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~-------------------~~~~~~~~l~~~~g~-~-~~ 62 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE-------------------VLEKRVKPLAEEIGC-N-FV 62 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch-------------------HHHHHHHHHHHhcCC-c-eE
Confidence 3567888999996 799999999999997 476655321 111111222221111 1 23
Q ss_pred EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+..++++.+.++..++.....+.+.|++|...
T Consensus 63 ~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnna 94 (260)
T PRK06603 63 SELDVTNPKSISNLFDDIKEKWGSFDFLLHGM 94 (260)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCccEEEEcc
Confidence 45566665666555543333346788887754
No 285
>PLN02240 UDP-glucose 4-epimerase
Probab=95.15 E-value=0.43 Score=44.13 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=51.7
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC--CCeEEEE
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP--DVTIEVH 91 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np--~v~v~~~ 91 (292)
|++++|+|.|+ |.+|+.+++.|+..|. +++++|... + +.....+++.+... .-+++.+
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~~~~~~ 63 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDNLD-------N-----------SSEEALRRVKELAGDLGDNLVFH 63 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCC-------c-----------chHHHHHHHHHhhcccCccceEE
Confidence 56789999986 8999999999999985 677776311 0 00001112222110 1234555
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+...+.. .++|+||.+..
T Consensus 64 ~~D~~~~~~l~~~~~~-----~~~d~vih~a~ 90 (352)
T PLN02240 64 KVDLRDKEALEKVFAS-----TRFDAVIHFAG 90 (352)
T ss_pred ecCcCCHHHHHHHHHh-----CCCCEEEEccc
Confidence 6667666666665532 26899998763
No 286
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.14 E-value=0.079 Score=49.77 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=55.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-------CeEEEEeCCcccccCCCCCccCcCCC-CChHHHHHHHHHH--hhCCCCeE
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI-------GKLILFDYDKVELANMNRLFFQPDQC-GLSKVEAARITLQ--NINPDVTI 88 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv-------g~i~lvD~D~V~~sNl~R~~~~~~di-G~~Ka~a~~~~l~--~~np~v~v 88 (292)
||.|+|+|..|+++|..|+..|. .++++...+. ++ +..=++...+.-. +..|.++.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~--------------~~~~~~~~~~in~~~~n~~ylpgi~L 66 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE--------------EIEGRNLTEIINTTHENVKYLPGIKL 66 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc--------------ccCCHHHHHHHHhcCCCccccCCCcC
Confidence 68999999999999999999873 3566654321 11 1111111111100 00122211
Q ss_pred EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHH--HhCCceee
Q psy2302 89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACN--QLGQTWFE 144 (292)
Q Consensus 89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~--~~~~p~i~ 144 (292)
+..+.-..++.+.+ .+.|+||.++.+...+..+.++.. +.+.+++.
T Consensus 67 ---p~~i~at~dl~eal-------~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs 114 (342)
T TIGR03376 67 ---PANLVAVPDLVEAA-------KGADILVFVIPHQFLEGICKQLKGHVKPNARAIS 114 (342)
T ss_pred ---CCCeEEECCHHHHH-------hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEE
Confidence 11111113444444 678999999999888877666542 23445543
No 287
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.14 E-value=0.082 Score=49.28 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=28.4
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGI-G-----KLILFDY 49 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gv-g-----~i~lvD~ 49 (292)
.||.|+|+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 48999999 9999999999999886 5 6999874
No 288
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.17 Score=44.16 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=54.9
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.++++|.|+ |++|..+++.|++.|. ++.++|.+. .+.+.+.+.+++.. .++..+..++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~D~ 64 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVARSQ------------------DALEALAAELRSTG--VKAAAYSIDL 64 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhCC--CcEEEEEccC
Confidence 457889986 8999999999999997 688776432 13333444444332 3455666777
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++.+.+...++.....+.+.|+||.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~lv~~ag 92 (241)
T PRK07454 65 SNPEAIAPGIAELLEQFGCPDVLINNAG 92 (241)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 7656555444322222356899998764
No 289
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.11 E-value=0.13 Score=46.30 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=52.5
Q ss_pred HhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 15 IRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 15 L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
|+++.++|.|++ |+|.++|+.|++.|. ++.++|.+. ...+.+++...+.. .. ..+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~------------------~~~~~~~~~~~~~g-~~--~~~ 62 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGE------------------ALGKRVKPLAESLG-SD--FVL 62 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCch------------------HHHHHHHHHHHhcC-Cc--eEE
Confidence 567889999997 899999999999996 566655321 01111111111121 11 245
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+..+++.....+...|++|.+..
T Consensus 63 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG 94 (271)
T PRK06505 63 PCDVEDIASVDAVFEALEKKWGKLDFVVHAIG 94 (271)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 56777666666555443333467888887754
No 290
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.11 E-value=0.12 Score=46.99 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=51.1
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+.+|.+||+|-+|..++..|...|. .++.+.|.+. .|.+. +.+.. .+++ ..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~------------------~~~~~----l~~~~-g~~~--~~- 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV------------------SNLKN----ASDKY-GITI--TT- 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH------------------HHHHH----HHHhc-CcEE--eC-
Confidence 4589999999999999999999885 3566655422 12222 22211 2322 11
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC 135 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~ 135 (292)
+..+.+ .++|+||.|+-+...+..+.++.
T Consensus 56 ------~~~e~~-------~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 ------NNNEVA-------NSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred ------CcHHHH-------hhCCEEEEEeChHHHHHHHHHHH
Confidence 112222 57899999999877777776655
No 291
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.11 E-value=0.094 Score=49.70 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=55.6
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHH--HhhCCCCe
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL--QNINPDVT 87 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l--~~~np~v~ 87 (292)
+..+|.|+|+|+.|+++|..|+..|. .++.+...|.. --++.-++.+.+.= .+.-|+++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~-------------~~~~~~~~~in~~~~N~~ylp~~~ 76 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI-------------VEGEKLSDIINTKHENVKYLPGIK 76 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc-------------ccchHHHHHHHhcCCCcccCCCCc
Confidence 45689999999999999999999874 35566543321 01111122222110 01123333
Q ss_pred EEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302 88 IEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC 135 (292)
Q Consensus 88 v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~ 135 (292)
+ +..+....++.+.+ .+.|+||.++.+...+..+.+..
T Consensus 77 L---p~ni~~tsdl~eav-------~~aDiIvlAVPsq~l~~vl~~l~ 114 (365)
T PTZ00345 77 L---PDNIVAVSDLKEAV-------EDADLLIFVIPHQFLESVLSQIK 114 (365)
T ss_pred C---CCceEEecCHHHHH-------hcCCEEEEEcChHHHHHHHHHhc
Confidence 2 11221113343433 67899999999988887777764
No 292
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.09 E-value=0.14 Score=45.63 Aligned_cols=89 Identities=15% Similarity=0.242 Sum_probs=58.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++++|.|+ |++|..+++.|+..|.. +.++|.+ ..+.+.+.+.+++. ..++..+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 65 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDIN------------------QELVDKGLAAYREL--GIEAHGYV 65 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC------------------HHHHHHHHHHHHhc--CCceEEEE
Confidence 456788999976 69999999999999975 6665532 12444444455443 23566677
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...+.+....+.+.|+||.+..
T Consensus 66 ~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag 96 (265)
T PRK07097 66 CDVTDEDGVQAMVSQIEKEVGVIDILVNNAG 96 (265)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 7777766666555433223356899987763
No 293
>PRK08324 short chain dehydrogenase; Validated
Probab=95.08 E-value=0.097 Score=53.64 Aligned_cols=86 Identities=29% Similarity=0.302 Sum_probs=56.7
Q ss_pred hcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
.+++|+|.| .|++|..+++.|+..|. ++.++|.+. .+.+.+.+.+... .++..+..+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~------------------~~~~~~~~~l~~~---~~v~~v~~D 478 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDE------------------EAAEAAAAELGGP---DRALGVACD 478 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCH------------------HHHHHHHHHHhcc---CcEEEEEec
Confidence 457899999 59999999999999997 788887532 1333333333322 345566666
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+.+...++.....+.+.|+||.+..
T Consensus 479 vtd~~~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 479 VTDEAAVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 76656665554432222357899998875
No 294
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.098 Score=45.22 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=30.3
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
++++++|+|.|. |++|..+++.|+..|.. +.++|.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence 356789999986 99999999999999975 7887754
No 295
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.06 E-value=0.039 Score=50.73 Aligned_cols=31 Identities=29% Similarity=0.631 Sum_probs=28.4
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
|.|+|+|.+|+.+|..|+..|..+++|+|-+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6899999999999999999886699999976
No 296
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.05 E-value=0.17 Score=47.00 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=30.8
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
...+|+|.|+|++|...++.+...|+.++.++|..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~ 203 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS 203 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 56799999999999999999989999888887743
No 297
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.03 E-value=0.34 Score=43.45 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=66.7
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
..+|+|+|--+=|..++..|...|+.-+.=+-. +.|.+ ..+ .+..+..++.
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat----------------~~g~~-----------~~~--~~~v~~G~l~ 52 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAG----------------RTGGP-----------ADL--PGPVRVGGFG 52 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEcc----------------CCCCc-----------ccC--CceEEECCCC
Confidence 357999999999999999999888754432221 12220 011 2344556663
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccCCHHHH--HHHHHHHHHhCCcee
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEAR--MTINMACNQLGQTWF 143 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r--~~in~~~~~~~~p~i 143 (292)
+.+.+.+++.+ .++++|||+|..++.. ..+.++|.+.++|++
T Consensus 53 ~~~~l~~~l~~-----~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 53 GAEGLAAYLRE-----EGIDLVIDATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CHHHHHHHHHH-----CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 34788888865 6899999999999755 678899999999996
No 298
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.03 E-value=0.2 Score=46.89 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=19.4
Q ss_pred CcEEEEcCChHHHHHHHHHHH
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTR 38 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~ 38 (292)
.+|+|+|+|.+|+.+++.|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 489999999999999999886
No 299
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.02 E-value=0.07 Score=49.62 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=28.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.||+|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 68888864
No 300
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.99 E-value=0.25 Score=44.77 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=22.8
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGI 41 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gv 41 (292)
..+|.+||+|.+|..++..|...|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC
Confidence 4589999999999999999999983
No 301
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.98 E-value=0.026 Score=50.63 Aligned_cols=106 Identities=10% Similarity=0.148 Sum_probs=63.4
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRC----GI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN 83 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~----Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n 83 (292)
+|++.||+++|+|+.|..++++|..+ |+ ++|.++|.+=+=.. +..|+-..| +...+..+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~-------~r~~l~~~~----~~~a~~~~ 90 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTD-------DREDLNPHK----KPFARKTN 90 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBT-------TTSSHSHHH----HHHHBSSS
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEec-------cCccCChhh----hhhhccCc
Confidence 79999999999999999999999999 99 89999997632111 112222222 23333333
Q ss_pred CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302 84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~ 145 (292)
+.-.. .++.+.++. -++|++|-++. ..-++.+|...+.....|.|+.
T Consensus 91 ~~~~~----------~~L~eav~~-----~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 91 PEKDW----------GSLLEAVKG-----AKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp TTT------------SSHHHHHHC-----H--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred ccccc----------cCHHHHHHh-----cCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEE
Confidence 32211 244455532 24588888764 2335667777777677787764
No 302
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.97 E-value=0.15 Score=44.12 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=53.4
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
++.++|+|+|+ |++|..+++.|+..|..-+.++..+. ...+...+.+....+ +++.+..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~ 63 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE------------------EAAEELVEAVEALGR--RAQAVQA 63 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH------------------HHHHHHHHHHHhcCC--ceEEEEC
Confidence 34678999975 99999999999999885333222211 122333344444433 3555666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.++.....+.+.|+||.+..
T Consensus 64 D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 64 DVTDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 776656665554332222357899987763
No 303
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.96 E-value=0.052 Score=50.59 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.3
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGI-G-----KLILFDY 49 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gv-g-----~i~lvD~ 49 (292)
-.||.|+|+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 358999999 9999999999998887 5 6999985
No 304
>PRK06701 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.16 Score=46.17 Aligned_cols=90 Identities=10% Similarity=0.180 Sum_probs=55.7
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++|+|.|+ |++|..+++.|++.|. ++++++.+.- ...+...+.+... ..++..+.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~-----------------~~~~~~~~~~~~~--~~~~~~~~ 102 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEH-----------------EDANETKQRVEKE--GVKCLLIP 102 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcc-----------------hHHHHHHHHHHhc--CCeEEEEE
Confidence 567789999985 8899999999999996 4667654210 0122223333322 34566667
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.+++....+.+.|+||.+..
T Consensus 103 ~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 103 GDVSDEAFCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 7777666666554432222356888886653
No 305
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=94.93 E-value=0.2 Score=46.18 Aligned_cols=87 Identities=24% Similarity=0.294 Sum_probs=53.3
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
.+++++|.|+ +|+|.++++.|++.|..++.+++.+. .|.+.+++.+.. +..++..+..+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~------------------~~~~~~~~~l~~--~~~~~~~~~~D 61 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDF------------------LKAEQAAKSLGM--PKDSYTIMHLD 61 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCH------------------HHHHHHHHHhcC--CCCeEEEEEcC
Confidence 4668888887 58999999999999955777765431 133333344432 23455566667
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+++.+.+...++.....+.+.|++|...
T Consensus 62 l~~~~~v~~~~~~~~~~~~~iD~lI~nA 89 (314)
T TIGR01289 62 LGSLDSVRQFVQQFRESGRPLDALVCNA 89 (314)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 7665555544433222235678777664
No 306
>PRK07856 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.095 Score=46.20 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~ 39 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRR 39 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56788999976 6899999999999997 67777754
No 307
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.11 Score=48.33 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=29.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|.|||+|.+|+.+|..++.+|.. ++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999954 78888654
No 308
>PRK07985 oxidoreductase; Provisional
Probab=94.91 E-value=0.16 Score=46.25 Aligned_cols=90 Identities=11% Similarity=0.138 Sum_probs=55.4
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++++|.|+ |++|.++++.|++.|.. +.+++.+.- ..+.+.+.+.+.+. ..++..+.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~-Vi~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~~~ 106 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAISYLPVE----------------EEDAQDVKKIIEEC--GRKAVLLP 106 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEecCCcc----------------hhhHHHHHHHHHHc--CCeEEEEE
Confidence 367789999986 89999999999999964 555542210 01233344444333 23455666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+...++.....+.+.|++|...
T Consensus 107 ~Dl~~~~~~~~~~~~~~~~~g~id~lv~~A 136 (294)
T PRK07985 107 GDLSDEKFARSLVHEAHKALGGLDIMALVA 136 (294)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 677766666555443322345778888664
No 309
>PRK09072 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.21 Score=44.32 Aligned_cols=86 Identities=21% Similarity=0.303 Sum_probs=54.8
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.| .|++|..+++.|++.|. ++++++.+. .+.+.+.+.+ +. ..++..+..
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~-~~--~~~~~~~~~ 60 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNA------------------EKLEALAARL-PY--PGRHRWVVA 60 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHH-hc--CCceEEEEc
Confidence 4678899998 58999999999999996 588877432 1222333333 22 235666666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.++++.... +...|+||.+..
T Consensus 61 D~~d~~~~~~~~~~~~~-~~~id~lv~~ag 89 (263)
T PRK09072 61 DLTSEAGREAVLARARE-MGGINVLINNAG 89 (263)
T ss_pred cCCCHHHHHHHHHHHHh-cCCCCEEEECCC
Confidence 77665655544432211 357899888754
No 310
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.89 E-value=0.13 Score=48.44 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=28.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|.|||+|-+|..++..|.+.|. .+.++|.|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~ 33 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP 33 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence 479999999999999999999997 566777554
No 311
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=94.88 E-value=0.18 Score=44.29 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=30.5
Q ss_pred HHHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 13 EHIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 13 ~~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
..+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 356788999985 56799999999999987 77887764
No 312
>PRK09135 pteridine reductase; Provisional
Probab=94.88 E-value=0.19 Score=43.68 Aligned_cols=89 Identities=12% Similarity=0.199 Sum_probs=55.2
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+.++|+|.|+ |++|..+++.|++.|. ++.++|... ..+.+.+.+.+.+..+. .+..+..+
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~-----------------~~~~~~~~~~~~~~~~~-~~~~~~~D 65 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRS-----------------AAEADALAAELNALRPG-SAAALQAD 65 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCC-----------------HHHHHHHHHHHHhhcCC-ceEEEEcC
Confidence 4578999975 8999999999999997 456655321 12333444455554432 35556666
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+.+...+......+.+.|+||.+..
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 66 LLDPDALPELVAACVAAFGRLDALVNNAS 94 (249)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 66656665554332222346899887764
No 313
>PRK08862 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.13 Score=45.01 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=55.7
Q ss_pred HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++++|.|++ |+|.++++.|+..|.. +.+++.+ ..+.+.+.+.+++.. .++..+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r~------------------~~~l~~~~~~i~~~~--~~~~~~~~ 61 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQD------------------QSALKDTYEQCSALT--DNVYSFQL 61 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCC------------------HHHHHHHHHHHHhcC--CCeEEEEc
Confidence 567889999765 6999999999999974 6665532 124444455555543 33455555
Q ss_pred cccchhhHHHHHhcCCCCCC-CcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEG-PVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~-~~DlVv~a~ 122 (292)
++++.+.+..+++.....+. ..|++|.+.
T Consensus 62 D~~~~~~~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 62 KDFSQESIRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 66665666655543332334 688888775
No 314
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.87 E-value=0.36 Score=42.13 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=26.0
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
||.||| +|.+|+.++..|++.| .+++++|.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r 32 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSR 32 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEc
Confidence 699997 8999999999999998 56777664
No 315
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.86 E-value=0.044 Score=46.43 Aligned_cols=38 Identities=29% Similarity=0.512 Sum_probs=32.6
Q ss_pred HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 69 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP 69 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence 37889999999999999999999999998 788888654
No 316
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.85 E-value=0.031 Score=47.84 Aligned_cols=41 Identities=29% Similarity=0.466 Sum_probs=31.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR 59 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R 59 (292)
+||.|+|+|=+|..+|..||..| -+++-+|-|.-....+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE-S-HHHHHHHHT
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEEeCChHHHHHHhh
Confidence 48999999999999999999999 457788888776666776
No 317
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=94.84 E-value=0.092 Score=45.72 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=51.3
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.| .|++|..+++.|+..|. .+.+.+.+. .|.+.+.+ +.. .++..+..
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~------------------~~~~~~~~---~~~--~~~~~~~~ 59 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRV------------------EKLEALAA---ELG--ERVKIFPA 59 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHH---HhC--CceEEEEc
Confidence 5678999998 58999999999999986 555544221 12222211 221 24555566
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.+.+....+.+.|+||.+..
T Consensus 60 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 89 (245)
T PRK12936 60 NLSDRDEVKALGQKAEADLEGVDILVNNAG 89 (245)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 666656655544322222357898887764
No 318
>PRK08643 acetoin reductase; Validated
Probab=94.83 E-value=0.23 Score=43.74 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=54.2
Q ss_pred cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
+++++|.| .|++|..+++.|++.|. ++.++|.+. .+.+.+.+.+.+.. .++..+..++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~Dl 60 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNE------------------ETAQAAADKLSKDG--GKAIAVKADV 60 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEEECCC
Confidence 45677775 67999999999999996 577776321 23334444444433 3455667777
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++.+.+...++.....+.+.|+||.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~vi~~a 87 (256)
T PRK08643 61 SDRDQVFAAVRQVVDTFGDLNVVVNNA 87 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 776666655443222235688888776
No 319
>PRK11579 putative oxidoreductase; Provisional
Probab=94.82 E-value=0.25 Score=46.18 Aligned_cols=86 Identities=20% Similarity=0.231 Sum_probs=48.5
Q ss_pred CcEEEEcCChHHH-HHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 18 LTVIVVGVGGVGS-VTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 18 ~~V~vvG~GglGs-~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
-||.|||+|.+|. ..+..+... ++.-..+.|.|. .|+ .+..+.+++ +
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~------------------~~~-------~~~~~~~~~--~---- 53 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDA------------------TKV-------KADWPTVTV--V---- 53 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCH------------------HHH-------HhhCCCCce--e----
Confidence 4899999999997 456666654 444445566442 111 112222221 1
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF 143 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i 143 (292)
.+++++++. .+.|+|+.|+.+.. ...+...|.+.|++++
T Consensus 54 ---~~~~ell~~-----~~vD~V~I~tp~~~-H~~~~~~al~aGkhVl 92 (346)
T PRK11579 54 ---SEPQHLFND-----PNIDLIVIPTPNDT-HFPLAKAALEAGKHVV 92 (346)
T ss_pred ---CCHHHHhcC-----CCCCEEEEcCCcHH-HHHHHHHHHHCCCeEE
Confidence 355566532 46888888887643 4444455556665443
No 320
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=94.82 E-value=0.23 Score=43.56 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=53.7
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++++|.| .|++|..+++.|+..|. ++.+++.+. .+.+.+.+.+... ..++..+..+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~l~~~--~~~~~~~~~Dl~ 59 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNE------------------ETAKETAKEINQA--GGKAVAYKLDVS 59 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEEcCCC
Confidence 4688887 58999999999999997 577776431 1233333444432 345666677777
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+.+.++.....+.+.|+||.+..
T Consensus 60 ~~~~i~~~~~~~~~~~~~id~vi~~ag 86 (254)
T TIGR02415 60 DKDQVFSAIDQAAEKFGGFDVMVNNAG 86 (254)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 666665554332222356788888763
No 321
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=94.77 E-value=0.46 Score=42.64 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=66.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
+||+|+|--+=|..++..|...|. +.+ .- + ++...+.+....+.+ ......+.+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~-sv--~-------------------t~~g~~~~~~~~~~~--~v~~G~lg~ 54 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIV-SV--A-------------------TSYGGELLKPELPGL--EVRVGRLGD 54 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEE-EE--E-------------------hhhhHhhhccccCCc--eEEECCCCC
Confidence 589999999999999999999997 222 10 0 001111111222333 345566633
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHH--HHHHHHHHHhCCcee
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEAR--MTINMACNQLGQTWF 143 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r--~~in~~~~~~~~p~i 143 (292)
.+.+.+++.+ .++++|||+|..++.. ..+.++|.+.|+|++
T Consensus 55 ~~~l~~~l~~-----~~i~~vIDATHPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 55 EEGLAEFLRE-----NGIDAVIDATHPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred HHHHHHHHHh-----CCCcEEEECCCchHHHHHHHHHHHHhhcCcceE
Confidence 4788888865 6899999999999865 568889999999986
No 322
>PRK12827 short chain dehydrogenase; Provisional
Probab=94.77 E-value=0.21 Score=43.52 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=56.2
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++|+|.| .|++|..+++.|+..|.. +++++... . -...+...+.+.+..... ++..+..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~~~------~--------~~~~~~~~~~~~~~~~~~--~~~~~~~ 66 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDIHP------M--------RGRAEADAVAAGIEAAGG--KALGLAF 66 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcCcc------c--------ccHHHHHHHHHHHHhcCC--cEEEEEc
Confidence 5678899997 589999999999999974 66666321 0 112344445555554433 4556666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.......++|.||.+..
T Consensus 67 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag 96 (249)
T PRK12827 67 DVRDFAATRAALDAGVEEFGRLDILVNNAG 96 (249)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 666655555444321111246888887753
No 323
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.11 Score=50.76 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=33.8
Q ss_pred HHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 10 ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 10 ~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
++-..+..++|+|+|+|+.|-.++..|.+.|. .+++.|.
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 34456677899999999999999999999998 8888884
No 324
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=94.76 E-value=0.2 Score=44.23 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=56.0
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+|.+++|+|.| .|++|..+++.|+..|.. +.++|.+ ..+.+.+.+.+++. ..++..+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~------------------~~~~~~~~~~l~~~--~~~~~~~~ 66 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN------------------ADAANHVVDEIQQL--GGQAFACR 66 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCC------------------HHHHHHHHHHHHhc--CCcEEEEE
Confidence 46788999996 578999999999999974 5555532 12333444444443 23455566
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.+......+.+.|+||.+..
T Consensus 67 ~D~~~~~~i~~~~~~~~~~~~~~d~li~~ag 97 (255)
T PRK06113 67 CDITSEQELSALADFALSKLGKVDILVNNAG 97 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6777656665544332223357888888753
No 325
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.75 E-value=0.19 Score=43.51 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=53.5
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+.+++|+|.|+ |++|..+++.|+..|.. +++++.+. .+.+.+.+.+.... .++.....
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 61 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNE------------------EAAEALAAELRAAG--GEARVLVF 61 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCh------------------hHHHHHHHHHHhcC--CceEEEEc
Confidence 34578999986 89999999999999986 77776542 12222333333332 34555556
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++.+.+.+...+......+.+.|.||.+.
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~id~vi~~a 90 (246)
T PRK05653 62 DVSDEAAVRALIEAAVEAFGALDILVNNA 90 (246)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 66655555544432111235678888876
No 326
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.75 E-value=0.13 Score=43.09 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV 52 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V 52 (292)
.|..++++|+|-|-+|.-+|+.|...| .++++.|-|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi 57 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI 57 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence 678899999999999999999999999 56899998875
No 327
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=94.75 E-value=0.13 Score=45.04 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+++++++|.|+ |++|..+++.|++.|. +++++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 67889999987 6799999999999996 567766543
No 328
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.74 E-value=0.31 Score=42.55 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=54.3
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++|+|.| .|++|..+++.|++.|. +++++|.+. .+.+...+.+... +..+++.+..+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~-~~~~~~~~~~Dl~ 61 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDV------------------ERLERLADDLRAR-GAVAVSTHELDIL 61 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCH------------------HHHHHHHHHHHHh-cCCeEEEEecCCC
Confidence 5788887 59999999999999996 577777542 2333444444432 3456777777777
Q ss_pred chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+.+.+.++++... ..+|+||.+.
T Consensus 62 ~~~~~~~~~~~~~---~~~d~vv~~a 84 (243)
T PRK07102 62 DTASHAAFLDSLP---ALPDIVLIAV 84 (243)
T ss_pred ChHHHHHHHHHHh---hcCCEEEECC
Confidence 7666665554321 3468888654
No 329
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.73 E-value=0.15 Score=51.09 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=31.0
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
.+++|+|||+|..|-..|..|++.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 46899999999999999999999998 599998543
No 330
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.73 E-value=0.053 Score=49.90 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~ 49 (292)
.|++++|+|||.| -+|..++.+|.+.|. .+++.+.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~ 191 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHS 191 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECC
Confidence 7899999999996 999999999999985 6777653
No 331
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.73 E-value=0.17 Score=46.15 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=26.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
||+|+|+|++|+.++..|++.|. ++++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 79999999999999999999985 5888775
No 332
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.71 E-value=0.38 Score=45.06 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=27.8
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD 48 (292)
.++|+|+|+||+|....+....+| .+++.+|
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~ 197 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT 197 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence 678999999999999999998899 7788776
No 333
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.69 E-value=0.12 Score=42.04 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=26.1
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
|+|+|+|++|+.+|..|.+.|.. +++++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc
Confidence 78999999999999999997754 88877433
No 334
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.69 E-value=0.46 Score=43.63 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=55.3
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
+|+|.|+ |-+|+.++..|...|. +++.++.+. .+. ..+.. +. ++.+..++++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~------------------~~~----~~l~~--~~--v~~v~~Dl~d 54 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL------------------RKA----SFLKE--WG--AELVYGDLSL 54 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh------------------HHh----hhHhh--cC--CEEEECCCCC
Confidence 7999995 9999999999999986 466655321 011 11111 12 3445555655
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCH------------HHHHHHHHHHHHhCC-ceeec
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNF------------EARMTINMACNQLGQ-TWFES 145 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~------------~~r~~in~~~~~~~~-p~i~~ 145 (292)
.+.+...+ .++|+||.+.... .....+-++|.+.++ .+|+.
T Consensus 55 ~~~l~~al-------~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~ 108 (317)
T CHL00194 55 PETLPPSF-------KGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFF 108 (317)
T ss_pred HHHHHHHH-------CCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEe
Confidence 55555554 5788888764311 112345567777776 34443
No 335
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=94.65 E-value=0.17 Score=45.00 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=53.2
Q ss_pred HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302 15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH 91 (292)
Q Consensus 15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~ 91 (292)
+++++++|.|+ +|+|.++|+.|++.|.. +.+.+.+. +.+ +.+...+.+.+... ++..+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~~~~--------------~~~--~~~~~~~~~~~~~~--~~~~~ 64 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITYLPD--------------EKG--RFEKKVRELTEPLN--PSLFL 64 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEecCc--------------ccc--hHHHHHHHHHhccC--cceEe
Confidence 56788999997 49999999999999975 55544221 111 11112222322111 23455
Q ss_pred eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
..++++.+.+.++++.....+.+.|++|.+..
T Consensus 65 ~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag 96 (258)
T PRK07370 65 PCDVQDDAQIEETFETIKQKWGKLDILVHCLA 96 (258)
T ss_pred ecCcCCHHHHHHHHHHHHHHcCCCCEEEEccc
Confidence 66676666666555443333467888887764
No 336
>PRK05650 short chain dehydrogenase; Provisional
Probab=94.59 E-value=0.25 Score=44.02 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=52.0
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++|+|.|+ |++|..+++.|+..|.. ++++|.+. .+.+.+.+.+++... ++.....+++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~-V~~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~D~~ 59 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWR-LALADVNE------------------EGGEETLKLLREAGG--DGFYQRCDVR 59 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHhcCC--ceEEEEccCC
Confidence 36888875 89999999999999974 66665432 234444445554433 3444555666
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+.+.++.-...+.++|+||.+..
T Consensus 60 ~~~~~~~~~~~i~~~~~~id~lI~~ag 86 (270)
T PRK05650 60 DYSQLTALAQACEEKWGGIDVIVNNAG 86 (270)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 555555544322212346888887753
No 337
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.59 E-value=0.17 Score=47.01 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=28.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.||.|+|+|.+|+.++..|++.|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999985 58888864
No 338
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=94.59 E-value=0.21 Score=45.59 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=25.0
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
||+|.|+ |-+|+.+++.|...| +++.+|.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~ 31 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDV 31 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEecc
Confidence 7999997 999999999999888 5777764
No 339
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.58 E-value=0.048 Score=50.48 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D 50 (292)
.||.|+|+ |.+|+.++..|+..|+ ++++++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 47999998 9999999999999997 479999974
No 340
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.57 E-value=0.25 Score=46.11 Aligned_cols=99 Identities=27% Similarity=0.336 Sum_probs=60.8
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
...+|+|+|+|++|-+..+.+..+|.++|.-||-.. .|-+.+++ . ... +.++.+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~------------------~Kl~~A~~-----f-GAT-~~vn~~- 238 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP------------------EKLELAKK-----F-GAT-HFVNPK- 238 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH------------------HHHHHHHh-----c-CCc-eeecch-
Confidence 356899999999999999999999999999999543 12222222 1 111 111110
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF 143 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i 143 (292)
+..++.+.+.+.. -.+.|.+|+|+.+......--+.+.+-|...+
T Consensus 239 -~~~~vv~~i~~~T--~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 239 -EVDDVVEAIVELT--DGGADYAFECVGNVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred -hhhhHHHHHHHhc--CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence 0001111111111 13899999999999876666667776555433
No 341
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.56 E-value=0.24 Score=43.60 Aligned_cols=80 Identities=11% Similarity=0.229 Sum_probs=49.5
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
+|+|.|+ |++|..+++.|+..|. ++.++|.+. .|.+.+.+. +.+ +++.+..++++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~---~~~--~~~~~~~Dl~~ 57 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQ------------------ERLQELKDE---LGD--NLYIAQLDVRN 57 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHH---hcc--ceEEEEecCCC
Confidence 6889985 8899999999999996 577776421 122222222 222 35555666666
Q ss_pred hhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.+.+.+.++.....+.+.|+||.+.
T Consensus 58 ~~~i~~~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 58 RAAIEEMLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 5665554433222235789988765
No 342
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.54 E-value=0.34 Score=45.22 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=63.8
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+++.++|+|.|+ |-+|+++++.|...|. +++.+|...-...+ . .. . ....+.. ...-+++.+.
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~---~------~~----~-~~~~~~~-~~~~~~~~~~ 75 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQH---N------LD----D-VRTSVSE-EQWSRFIFIQ 75 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCcchh---h------hh----h-hhhcccc-ccCCceEEEE
Confidence 567799999985 9999999999999885 67777753211000 0 00 0 0000000 0011345556
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCC---------H--------HHHHHHHHHHHHhCC-ceeecCc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN---------F--------EARMTINMACNQLGQ-TWFESGV 147 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~---------~--------~~r~~in~~~~~~~~-p~i~~~~ 147 (292)
.++.+.+.+..++ .++|+||-+... + .....+-++|++.++ .+++.+.
T Consensus 76 ~Di~d~~~l~~~~-------~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 76 GDIRKFTDCQKAC-------KNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred ccCCCHHHHHHHh-------hCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 6776655666655 568888877531 1 111245568888876 5666543
No 343
>PRK05599 hypothetical protein; Provisional
Probab=94.54 E-value=0.25 Score=43.58 Aligned_cols=84 Identities=15% Similarity=0.270 Sum_probs=54.2
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
.|+|.|+ +|+|.++++.|++ | .++.+++.+. .+.+.+++.+++.++ ..+..+..++++
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g-~~Vil~~r~~------------------~~~~~~~~~l~~~~~-~~~~~~~~Dv~d 60 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-G-EDVVLAARRP------------------EAAQGLASDLRQRGA-TSVHVLSFDAQD 60 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-C-CEEEEEeCCH------------------HHHHHHHHHHHhccC-CceEEEEcccCC
Confidence 5777765 6899999999995 7 5677766321 245566666766543 234556667776
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.+.+.+.++.....+.+.|++|.+..
T Consensus 61 ~~~v~~~~~~~~~~~g~id~lv~nag 86 (246)
T PRK05599 61 LDTHRELVKQTQELAGEISLAVVAFG 86 (246)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 66666555443333467888886653
No 344
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.53 E-value=0.14 Score=45.09 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=25.1
Q ss_pred cEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRC--GIGKLILFDYDK 51 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~--Gvg~i~lvD~D~ 51 (292)
+|.|||||++|..++..+-.- .+....+.|.+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ 36 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDE 36 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCH
Confidence 689999999999999877542 366666666554
No 345
>KOG1200|consensus
Probab=94.52 E-value=0.26 Score=42.59 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=34.1
Q ss_pred HHHHHHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 10 ENYEHIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 10 ~~q~~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+.+++++++..+|-|.| |+|-++++.|++.|.. +.+.|-|.
T Consensus 7 ~~~~r~~sk~~~vtGg~sGIGrAia~~la~~Gar-v~v~dl~~ 48 (256)
T KOG1200|consen 7 EVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGAR-VAVADLDS 48 (256)
T ss_pred HHHHHHhcceeEEecCCchHHHHHHHHHHhcCcE-EEEeecch
Confidence 56889999988888765 8999999999999965 66677655
No 346
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=94.52 E-value=0.11 Score=46.12 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=61.0
Q ss_pred HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.++++-|+|-|+. |+|-++|+.|+..|. ++.+..... .|-+++++++.+ .++....
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~------------------drL~~la~~~~~----~~~~~~~ 59 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGA-KVVLAARRE------------------ERLEALADEIGA----GAALALA 59 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccH------------------HHHHHHHHhhcc----CceEEEe
Confidence 3456667788875 899999999999998 566655321 234444444433 5567777
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+...++.....+.+.|++|+-.
T Consensus 60 ~DVtD~~~~~~~i~~~~~~~g~iDiLvNNA 89 (246)
T COG4221 60 LDVTDRAAVEAAIEALPEEFGRIDILVNNA 89 (246)
T ss_pred eccCCHHHHHHHHHHHHHhhCcccEEEecC
Confidence 888887777777776666778999999765
No 347
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.50 E-value=0.11 Score=46.66 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=27.9
Q ss_pred EEEEcC-ChHHHHHHHHHHHhC--C-CeEEEEeCCc
Q psy2302 20 VIVVGV-GGVGSVTAEMLTRCG--I-GKLILFDYDK 51 (292)
Q Consensus 20 V~vvG~-GglGs~va~~La~~G--v-g~i~lvD~D~ 51 (292)
|.|||+ |.+|+.++..|+..| . .++.|+|-+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 689999 999999999999988 4 6899998644
No 348
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.47 E-value=0.24 Score=43.76 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=50.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++|+|.|+ |++|..+++.|++.|. ++.++|.+. .+.+.+++.+. ..++..+..+++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~----~~~~~~~~~D~~ 58 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINE------------------AGLAALAAELG----AGNAWTGALDVT 58 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHhc----CCceEEEEecCC
Confidence 46888874 8999999999999996 566665322 12222222221 345666667777
Q ss_pred chhhHHHHHhcCCC-CCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSL-TEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~-~~~~~DlVv~a~d 123 (292)
+.+.+.+.+..... ...+.|+||.+..
T Consensus 59 ~~~~v~~~~~~~~~~~~~~id~vi~~ag 86 (260)
T PRK08267 59 DRAAWDAALADFAAATGGRLDVLFNNAG 86 (260)
T ss_pred CHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 65666554432111 1356799887764
No 349
>PLN02256 arogenate dehydrogenase
Probab=94.46 E-value=0.3 Score=45.10 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=30.2
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+-+..+|.|||+|.+|..++..|.+.|. +++.+|.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~ 68 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRS 68 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECc
Confidence 3366799999999999999999999884 67787754
No 350
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.45 E-value=0.46 Score=44.02 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=45.6
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
.++.++|.|+ ||+|.++|+.|++.|. ++.++|.+. .|.+.+++.+++..+..++..+..+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~------------------~~l~~~~~~l~~~~~~~~~~~~~~D 112 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP------------------DKLKDVSDSIQSKYSKTQIKTVVVD 112 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH------------------HHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 4678888886 7899999999999997 588877432 2555666777776666666666655
Q ss_pred cc
Q psy2302 95 IT 96 (292)
Q Consensus 95 i~ 96 (292)
++
T Consensus 113 l~ 114 (320)
T PLN02780 113 FS 114 (320)
T ss_pred CC
Confidence 54
No 351
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.43 E-value=0.13 Score=49.09 Aligned_cols=56 Identities=16% Similarity=0.398 Sum_probs=44.3
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCCCcc-CcCC--CCChHHHHHHH
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANMNRLFF-QPDQ--CGLSKVEAARI 77 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~R~~~-~~~d--iG~~Ka~a~~~ 77 (292)
+|++.||++.|+|+-|..++..|...|+. +|.++|.-=+ ++ +.+| .++.|.+.+.+
T Consensus 196 ~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~--------l~~~r~~~~~~~~k~~~a~~ 256 (432)
T COG0281 196 KLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL--------LYDGREDLTMNQKKYAKAIE 256 (432)
T ss_pred CccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc--------ccCCCcccccchHHHHHHHh
Confidence 88999999999999999999999999998 9999995422 23 2233 56777766654
No 352
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.39 E-value=0.29 Score=46.93 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=31.9
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVE 53 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~ 53 (292)
++.||+|+|.|.+|..+++.|...|. .++++|.|.++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~ 275 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE 275 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh
Confidence 46789999999999999999998886 68888988654
No 353
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.39 E-value=0.32 Score=47.25 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=33.1
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.|+.+||+|-|.|.+|+++|+.|...|..-+.+-|.+
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~ 261 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD 261 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5889999999999999999999999998888876643
No 354
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.38 E-value=0.038 Score=51.79 Aligned_cols=37 Identities=32% Similarity=0.569 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTR-CGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~-~Gvg~i~lvD~D 50 (292)
.|++++|+|+|+ |.+|+.+++.|+. .|+.++++++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 467899999999 8999999999985 589999997743
No 355
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.37 E-value=0.18 Score=45.04 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=51.8
Q ss_pred HHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302 14 HIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV 90 (292)
Q Consensus 14 ~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~ 90 (292)
++++++|+|.|+ +|+|.++|+.|++.|.. +.+++.+. | ...+.+.+.+ +. +.. ..
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~-v~~~~~~~-------~--------~~~~~~~~~~---~~-~~~--~~ 60 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAE-LAFTYVGD-------R--------FKDRITEFAA---EF-GSD--LV 60 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe-EEEEccch-------H--------HHHHHHHHHH---hc-CCc--ce
Confidence 467889999994 69999999999999964 65554210 0 0112221211 11 221 23
Q ss_pred EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+..++++.+.+...++.....+.+.|++|.+.
T Consensus 61 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 92 (260)
T PRK06997 61 FPCDVASDEQIDALFASLGQHWDGLDGLVHSI 92 (260)
T ss_pred eeccCCCHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 45566666666655544333346789888765
No 356
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.36 E-value=0.12 Score=45.55 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=50.5
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++++|.|+ |++|..+++.|+..|.. +.+++... ..+. +.+.+. .+..+.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~-v~~~~~~~-----------------~~~~----~~l~~~----~~~~~~ 57 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAK-VAVLYNSA-----------------ENEA----KELREK----GVFTIK 57 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCc-----------------HHHH----HHHHhC----CCeEEE
Confidence 356789999985 89999999999999964 55544221 0111 122221 244556
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+...++.....+.+.|+||.+.
T Consensus 58 ~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 87 (255)
T PRK06463 58 CDVGNRDQVKKSKEVVEKEFGRVDVLVNNA 87 (255)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 666665666555443222335788888775
No 357
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.35 E-value=0.23 Score=46.25 Aligned_cols=82 Identities=20% Similarity=0.134 Sum_probs=49.8
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |.+|+++++.|++.|. +++++|.+.-. ..+. .+.+. .. -+++.+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~---~~~~~-~~--~~~~~~~~ 59 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPT---------------SPNL---FELLN-LA--KKIEDHFG 59 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCcc---------------chhH---HHHHh-hc--CCceEEEc
Confidence 45789999996 8899999999999985 46666644211 0010 11111 11 13444556
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.++. .++|+||.+..
T Consensus 60 Dl~~~~~~~~~~~~-----~~~d~vih~A~ 84 (349)
T TIGR02622 60 DIRDAAKLRKAIAE-----FKPEIVFHLAA 84 (349)
T ss_pred cCCCHHHHHHHHhh-----cCCCEEEECCc
Confidence 66666666666542 25788887763
No 358
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.34 E-value=0.035 Score=49.82 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=64.5
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCC----------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIG----------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN 83 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg----------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n 83 (292)
+|++.||+++|+|+-|..++++|...++. +|.++|..=+=.. +..+.-..|...+ ++. +
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~-------~r~~l~~~~~~~~-~~~---~ 90 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVK-------NRKETCPNEYHLA-RFA---N 90 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeC-------CCCccCHHHHHHH-HHc---C
Confidence 78999999999999999999999999997 9999996542111 1112222222211 111 1
Q ss_pred CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302 84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~ 145 (292)
+.-. ..++.+.++. -++|++|-.+. ..-++..|...+.....|.|+.
T Consensus 91 ~~~~----------~~~L~eav~~-----~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 91 PERE----------SGDLEDAVEA-----AKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred cccc----------cCCHHHHHHh-----hCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 1100 1244444421 27888887665 2334556666666666777764
No 359
>PRK12743 oxidoreductase; Provisional
Probab=94.33 E-value=0.27 Score=43.42 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=52.2
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.++|+|.|+ |++|..+++.|+..|.. +.+++... ..+.+.+.+.++... .++..+..++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~Dl 61 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITWHSD-----------------EEGAKETAEEVRSHG--VRAEIRQLDL 61 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCC-----------------hHHHHHHHHHHHhcC--CceEEEEccC
Confidence 457888875 68999999999999974 44433211 123444445554443 3455566667
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++.+.+...+++....+.+.|+||.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag 89 (256)
T PRK12743 62 SDLPEGAQALDKLIQRLGRIDVLVNNAG 89 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6655555444332223356888887653
No 360
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.33 E-value=0.37 Score=43.14 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=24.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC---CeEEEE
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI---GKLILF 47 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv---g~i~lv 47 (292)
||.+||+|.+|+.++..|.+.|. .+++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 69999999999999999999985 255554
No 361
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.33 E-value=0.064 Score=49.02 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=58.9
Q ss_pred cccCChHHHHHHHhcCcEEEEcCChH-HHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHh
Q psy2302 3 LKRMGIVENYEHIRTLTVIVVGVGGV-GSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQN 81 (292)
Q Consensus 3 l~~~G~~~~q~~L~~~~V~vvG~Ggl-Gs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~ 81 (292)
|+..|+ .+++++|+|+|.|.+ |..++.+|.+.|. .+++.+..
T Consensus 149 L~~~~i-----~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~------------------------------- 191 (285)
T PRK14189 149 LESIGI-----PLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSK------------------------------- 191 (285)
T ss_pred HHHcCC-----CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCC-------------------------------
Confidence 444555 789999999999999 9999999998874 56553210
Q ss_pred hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcc
Q psy2302 82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVS 148 (292)
Q Consensus 82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~ 148 (292)
+ .++.+.+ +.+|+||.++..+. .+.....+.|.-+|+.|..
T Consensus 192 --------------t--~~l~~~~-------~~ADIVV~avG~~~---~i~~~~ik~gavVIDVGin 232 (285)
T PRK14189 192 --------------T--RDLAAHT-------RQADIVVAAVGKRN---VLTADMVKPGATVIDVGMN 232 (285)
T ss_pred --------------C--CCHHHHh-------hhCCEEEEcCCCcC---ccCHHHcCCCCEEEEcccc
Confidence 0 2333443 68999999998654 3555666677777777664
No 362
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=94.33 E-value=0.3 Score=43.13 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=54.4
Q ss_pred HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
|++++++|.|+. ++|.++++.|+..|.. +.++|... + +...+.+.+.. .++..+..
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~~~~-------------------~-~~~~~~~~~~~--~~~~~~~~ 64 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINIVE-------------------P-TETIEQVTALG--RRFLSLTA 64 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEecCcc-------------------h-HHHHHHHHhcC--CeEEEEEC
Confidence 567888888665 7999999999999964 54544210 0 11223344332 34566677
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+++..++++....+.+.|++|.+..
T Consensus 65 Dl~~~~~~~~~~~~~~~~~~~~D~li~~Ag 94 (253)
T PRK08993 65 DLRKIDGIPALLERAVAEFGHIDILVNNAG 94 (253)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 777767776665543333457899998764
No 363
>PRK06398 aldose dehydrogenase; Validated
Probab=94.32 E-value=0.18 Score=44.84 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=29.7
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.|++++|+|.|+ |++|.++++.|++.|. ++.++|.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 467789999985 6999999999999996 67777754
No 364
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.31 E-value=0.23 Score=45.06 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=28.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+|.|||+|.+|..++..|.+.|. +++++|.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999986 688888653
No 365
>PRK07069 short chain dehydrogenase; Validated
Probab=94.29 E-value=0.34 Score=42.33 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=50.6
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
+|+|.| .|++|..+++.|++.|. ++.++|.+. ..+.+.+.+.+........+..+..++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 62 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDIND-----------------AAGLDAFAAEINAAHGEGVAFAAVQDVTD 62 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCc-----------------chHHHHHHHHHHhcCCCceEEEEEeecCC
Confidence 377776 68899999999999996 677766321 12333444444433322233334445555
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.+.+...++.....+.+.|+||.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~id~vi~~ag 88 (251)
T PRK07069 63 EAQWQALLAQAADAMGGLSVLVNNAG 88 (251)
T ss_pred HHHHHHHHHHHHHHcCCccEEEECCC
Confidence 55555444322222356888887763
No 366
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.29 E-value=0.13 Score=47.64 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=30.9
Q ss_pred HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
..|.+++|.|||.|.+|..+|+.+...|. ++..+|.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence 36899999999999999999999988876 4666665
No 367
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.23 E-value=0.35 Score=42.44 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=52.8
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
++.|+|.|+ |++|+.+++.|+..|. ++.++|... ..+.....+.++.. ..++..+..++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~-----------------~~~~~~~~~~~~~~--~~~~~~~~~D~ 61 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAINDRPD-----------------DEELAATQQELRAL--GVEVIFFPADV 61 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCc-----------------hhHHHHHHHHHHhc--CCceEEEEecC
Confidence 456788765 8999999999999997 566666321 11222233334332 23566667777
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++.+.+.++++.-...+...|+||.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~vi~~ag 89 (256)
T PRK12745 62 ADLSAHEAMLDAAQAAWGRIDCLVNNAG 89 (256)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 7666665544332222356888888753
No 368
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.21 E-value=0.54 Score=43.30 Aligned_cols=35 Identities=31% Similarity=0.310 Sum_probs=30.3
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
...+|+|.|+|++|..+++.+...|..+++.+|.+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 36799999999999999999999999878777643
No 369
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.20 E-value=0.32 Score=42.51 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=52.7
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++|+|.|+ |++|..+++.|++.|.. +.+++.. ...+.+.+.+.++... .++..+..+++
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~-v~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~Dl~ 62 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWS-VGINYAR-----------------DAAAAEETADAVRAAG--GRACVVAGDVA 62 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC-----------------CHHHHHHHHHHHHhcC--CcEEEEEeccC
Confidence 57888876 68999999999999964 4443321 1124444555554433 34566666776
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+.+.++.....+.+.|+||.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~li~~ag 89 (248)
T PRK06947 63 NEADVIAMFDAVQSAFGRLDALVNNAG 89 (248)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 656665544332222357899987663
No 370
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.20 E-value=0.35 Score=45.13 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=19.0
Q ss_pred cEEEEcCChHHHHHHHHHHH
Q psy2302 19 TVIVVGVGGVGSVTAEMLTR 38 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~ 38 (292)
||+|+|+|.+|+.+++.|..
T Consensus 2 rVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999999987
No 371
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.19 E-value=0.37 Score=42.15 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=52.0
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++|+|.| .|++|..+++.|++.|. ++.+++.+. .+.+.+.+.+... ..++..+..+++
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~D~~ 60 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGE------------------AGAEAAAKVATDA--GGSVIYLVADVT 60 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCceEEEECCCC
Confidence 5789998 58999999999999997 688877542 1223333333322 235666666676
Q ss_pred chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+.+.+...+......+.+.|+||.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~vi~~a 86 (255)
T TIGR01963 61 KEDEIADMIAAAAAEFGGLDILVNNA 86 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 65555444332222235678887655
No 372
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=94.16 E-value=0.31 Score=43.13 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=57.0
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++++|.| .|++|.++++.|++.|.. +.+..... ..+...+.+.+++. ..++..+.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~~~~-----------------~~~~~~~~~~l~~~--~~~~~~~~ 63 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINYRSD-----------------EEEANDVAEEIKKA--GGEAIAVK 63 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCC-----------------HHHHHHHHHHHHHc--CCeEEEEE
Confidence 46788999996 578999999999999964 44433211 12344455555543 34566667
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.++++.....+.+.|++|.+..
T Consensus 64 ~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag 94 (261)
T PRK08936 64 GDVTVESDVVNLIQTAVKEFGTLDVMINNAG 94 (261)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 7777666666555432222356888887653
No 373
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.86 Score=38.62 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=63.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL 98 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~ 98 (292)
+++|+|..|.|..++..|+..|. ++.+++.+. .+++.+...+.. .-++.....++.+.
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~-~V~v~~R~~------------------~~~~~l~~~l~~---~~~i~~~~~Dv~d~ 59 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGF-HVSVIARRE------------------VKLENVKRESTT---PESITPLPLDYHDD 59 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcC-EEEEEECCH------------------HHHHHHHHHhhc---CCcEEEEEccCCCH
Confidence 68999998999999999999996 455544321 122222222221 22455666677666
Q ss_pred hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302 99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT 141 (292)
Q Consensus 99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p 141 (292)
+.+...++.....+...|++|...-.. ....+..+|.+.++.
T Consensus 60 ~sv~~~i~~~l~~~g~id~lv~~vh~~-~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 60 DALKLAIKSTIEKNGPFDLAVAWIHSS-AKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecccc-chhhHHHHHHHHccC
Confidence 666655543222235788988877654 456678899999887
No 374
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.14 E-value=0.12 Score=48.10 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=58.8
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|.+++|.|||+|.+|+.+|+.|...|+. +..+|+-.-.. +.. ...+.
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~----------------~~~-----------~~~~~---- 186 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRE----------------RAG-----------VDGVV---- 186 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchh----------------hhc-----------cccce----
Confidence 67899999999999999999999999986 55555411100 000 00000
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHh---CCceeecC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQL---GQTWFESG 146 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~---~~p~i~~~ 146 (292)
...++++++ ...|+|+..+. ++++|-+||..-... |.-+|+++
T Consensus 187 ---~~~~Ld~lL-------~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a 233 (324)
T COG0111 187 ---GVDSLDELL-------AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA 233 (324)
T ss_pred ---ecccHHHHH-------hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence 114566666 67999888775 567888887754432 44566553
No 375
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.13 E-value=0.45 Score=44.41 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=29.4
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
+.+|+|.|+|++|..+++.+...|+.+++.+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 679999999999999999988999988888765
No 376
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.13 E-value=0.4 Score=46.56 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=34.3
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.|+.+||+|-|.|-+|..+|+.|...|..-+++-|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5789999999999999999999999998888888876
No 377
>PRK05442 malate dehydrogenase; Provisional
Probab=94.11 E-value=0.14 Score=47.72 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=28.7
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGI-G-----KLILFDY 49 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gv-g-----~i~lvD~ 49 (292)
.||.|+|+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 58999998 9999999999998886 5 7999985
No 378
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.06 E-value=0.066 Score=49.54 Aligned_cols=33 Identities=42% Similarity=0.712 Sum_probs=30.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D 50 (292)
.||.|+|+|.+|+.+|..|+.-+++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999999999999 99999955
No 379
>PRK07201 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.28 Score=49.65 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=58.9
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++++|.|+ |++|.++++.|++.|. ++.+++.+. .+.+.+.+.+.... .++..+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~ 426 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNG------------------EALDELVAEIRAKG--GTAHAYT 426 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence 456788999986 8899999999999997 687776432 23344444454433 3566666
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+...++.....+.+.|++|.+..
T Consensus 427 ~Dv~~~~~~~~~~~~~~~~~g~id~li~~Ag 457 (657)
T PRK07201 427 CDLTDSAAVDHTVKDILAEHGHVDYLVNNAG 457 (657)
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 7777666666555432223357899887664
No 380
>PRK12742 oxidoreductase; Provisional
Probab=94.00 E-value=0.16 Score=44.04 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEE
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILF 47 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lv 47 (292)
+|++++|+|.|+ |++|.++++.|+..|.. +.+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEe
Confidence 366789999986 89999999999999874 5443
No 381
>PRK00811 spermidine synthase; Provisional
Probab=93.98 E-value=0.35 Score=44.11 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=27.0
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
..++|+++|+|. |......|...++.++++||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 457999999996 55555555556899999999776
No 382
>KOG0069|consensus
Probab=93.98 E-value=0.087 Score=49.17 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=25.6
Q ss_pred HHHhcCcEEEEcCChHHHHHHHHHHHhC
Q psy2302 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCG 40 (292)
Q Consensus 13 ~~L~~~~V~vvG~GglGs~va~~La~~G 40 (292)
..+.+++|.|+|+|++|..+|+.|-..|
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc
Confidence 3678999999999999999999999966
No 383
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.98 E-value=0.21 Score=43.46 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=26.1
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
|++|.|+ |++|..+++.|++.|. ++.++|.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6889976 8999999999999996 67777643
No 384
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.96 E-value=0.17 Score=46.96 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=56.7
Q ss_pred HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
..|++++|.|+|.|.+|..+|+.|...|+. +..+|... ..+ ...
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~------------~~~-------------------~~~---- 186 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKG------------ASV-------------------CRE---- 186 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCc------------ccc-------------------ccc----
Confidence 368999999999999999999999988874 55544210 000 000
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHh---CCceeec
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQL---GQTWFES 145 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~---~~p~i~~ 145 (292)
. ...+++++ ...|+|+.+.. +.+++.+||+..... +.-+|+.
T Consensus 187 -~---~~~l~ell-------~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~ 232 (314)
T PRK06932 187 -G---YTPFEEVL-------KQADIVTLHCPLTETTQNLINAETLALMKPTAFLINT 232 (314)
T ss_pred -c---cCCHHHHH-------HhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEEC
Confidence 0 02355555 67999888775 677888887765543 3345554
No 385
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.95 E-value=0.37 Score=49.21 Aligned_cols=34 Identities=26% Similarity=0.569 Sum_probs=30.6
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.+++|+|||.|..|-..|..|++.|.. ++++|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999975 8998864
No 386
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.95 E-value=0.11 Score=47.83 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=30.1
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD 48 (292)
.+++++|+|+| .|-+|..+|.+|...|. .+++.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~ 189 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAH 189 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEEC
Confidence 68999999999 99999999999999885 577764
No 387
>KOG2013|consensus
Probab=93.94 E-value=0.078 Score=51.26 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=43.1
Q ss_pred CccCCCCchHHHHHHHHHHHHHHHHHhCCCCCCeeEEEeCCCC-----CeeeeeccCCCCCCCccccchh
Q psy2302 188 GVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTD-----FFPKMKLKPNPSCDDSYCVQRQ 252 (292)
Q Consensus 188 ~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~~~~~~~d~~~~-----~~~~~~l~~~p~C~~~~C~~~~ 252 (292)
|...+.+.++++++|++.+.+++|.|.+.-.-.+...+..... .+....-+|||.|+ +|+...
T Consensus 377 gnIipaIAtTNAiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~--vCs~~~ 444 (603)
T KOG2013|consen 377 GNIIPAIATTNAIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLPWALRPPNPNCP--VCSEVP 444 (603)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecccccCCCCCCCc--cccccc
Confidence 3334567788999999999999999977555444444433222 12233348899999 899754
No 388
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.89 E-value=0.057 Score=49.64 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=32.7
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.+.+++|+|+|.|++|..++..|.+.|. +++++|.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4578999999999999999999999997 89998864
No 389
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.88 E-value=0.35 Score=42.73 Aligned_cols=87 Identities=11% Similarity=0.249 Sum_probs=55.8
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++++|.| .+|+|..+++.|++.|.. +.+++.+. .+.+.+.+++.. .++..+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~~~--------------------~~~~~~~~~~~~--~~~~~~~ 61 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGVAE--------------------APETQAQVEALG--RKFHFIT 61 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCch--------------------HHHHHHHHHHcC--CeEEEEE
Confidence 35678888886 579999999999999974 55554211 112233444332 3566677
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+..+++.....+.+.|++|.+..
T Consensus 62 ~Dl~~~~~~~~~~~~~~~~~g~iD~lv~~ag 92 (251)
T PRK12481 62 ADLIQQKDIDSIVSQAVEVMGHIDILINNAG 92 (251)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 7777767776665543223467898887753
No 390
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.88 E-value=0.58 Score=45.51 Aligned_cols=35 Identities=34% Similarity=0.408 Sum_probs=29.3
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
+-+++||+|.|+ |-+|+.+++.|...|. ++..+|.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 667889999985 9999999999999986 4666664
No 391
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.87 E-value=0.93 Score=40.84 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=47.6
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
+|+|.|. |.+|.++++.|...|- -+++++|..... + +. +++......-.++.+..+++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~-----~-----------~~----~~~~~~~~~~~~~~~~~Dl~ 60 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYA-----G-----------NL----ENLADLEDNPRYRFVKGDIG 60 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcc-----h-----------hh----hhhhhhccCCCcEEEEcCCc
Confidence 5889986 9999999999999873 467776642210 0 00 01111111112344556676
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+.+.++. .++|+||.+..
T Consensus 61 ~~~~~~~~~~~-----~~~d~vi~~a~ 82 (317)
T TIGR01181 61 DRELVSRLFTE-----HQPDAVVHFAA 82 (317)
T ss_pred CHHHHHHHHhh-----cCCCEEEEccc
Confidence 66666666532 24899998874
No 392
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=93.86 E-value=0.25 Score=43.77 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.|++++|+|.| .|++|..+++.|++.|. ++.++|.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~ 42 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIH 42 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46788999997 57999999999999996 46666643
No 393
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.86 E-value=0.67 Score=43.54 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=29.1
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
..+|+|.|+|++|..+++.+...|+.+++.+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 578999999999999999888899988888774
No 394
>PRK07832 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.38 Score=42.93 Aligned_cols=86 Identities=24% Similarity=0.322 Sum_probs=49.8
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++++|.| .|++|..+++.|++.|.. +.+++.+. .+.+.+.+.+....... +.....+++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r~~------------------~~~~~~~~~~~~~~~~~-~~~~~~D~~ 60 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDRDA------------------DGLAQTVADARALGGTV-PEHRALDIS 60 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHhcCCCc-ceEEEeeCC
Confidence 3678886 589999999999999964 77766321 13333444444433221 223344555
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+...+++-...+.+.|+||.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~lv~~ag 87 (272)
T PRK07832 61 DYDAVAAFAADIHAAHGSMDVVMNIAG 87 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 545554433322122356899988764
No 395
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.83 E-value=0.32 Score=47.28 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=27.2
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+|.|+| +|.+|..++..|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 799997 89999999999999985 68888854
No 396
>PRK07775 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.51 Score=42.27 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=53.6
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
...++|+|.|+ |++|.++++.|+..|. ++.+++... .+...+.+.++... .++..+..
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 66 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGF-PVALGARRV------------------EKCEELVDKIRADG--GEAVAFPL 66 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEEEC
Confidence 45568999985 9999999999999997 566655321 12222333343322 34556666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+..+++.....+.+.|+||.+..
T Consensus 67 Dl~~~~~~~~~~~~~~~~~~~id~vi~~Ag 96 (274)
T PRK07775 67 DVTDPDSVKSFVAQAEEALGEIEVLVSGAG 96 (274)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 777666666555432222346788877663
No 397
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.80 E-value=0.23 Score=45.81 Aligned_cols=28 Identities=43% Similarity=0.700 Sum_probs=25.4
Q ss_pred EEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302 22 VVGVGGVGSVTAEMLTRCGI-GKLILFDY 49 (292)
Q Consensus 22 vvG~GglGs~va~~La~~Gv-g~i~lvD~ 49 (292)
|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999997 57999985
No 398
>PLN02740 Alcohol dehydrogenase-like
Probab=93.79 E-value=0.65 Score=43.88 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=30.0
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+.+|+|+|+|++|..+++.+...|+.+++.+|.+
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 5689999999999999999999998888888753
No 399
>KOG0022|consensus
Probab=93.78 E-value=0.52 Score=43.59 Aligned_cols=93 Identities=27% Similarity=0.367 Sum_probs=58.2
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH--hhCCCCeEEEEec
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ--NINPDVTIEVHNF 93 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~--~~np~v~v~~~~~ 93 (292)
..++|+|.|+|++|.++++---..|.++|+=||-. ..|-+-+++.=. =+||. ... .
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN------------------~~Kf~~ak~fGaTe~iNp~-d~~---~ 249 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDIN------------------PDKFEKAKEFGATEFINPK-DLK---K 249 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecC------------------HHHHHHHHhcCcceecChh-hcc---c
Confidence 45789999999999999999999999999999831 223322222100 02221 000 0
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL 138 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~ 138 (292)
.+ .+-+.++- -.++|+-++|+.+..+.+.--+.|++-
T Consensus 250 ~i--~evi~EmT------dgGvDysfEc~G~~~~m~~al~s~h~G 286 (375)
T KOG0022|consen 250 PI--QEVIIEMT------DGGVDYSFECIGNVSTMRAALESCHKG 286 (375)
T ss_pred cH--HHHHHHHh------cCCceEEEEecCCHHHHHHHHHHhhcC
Confidence 01 01222221 168999999999998877666666654
No 400
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.76 E-value=0.21 Score=48.62 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=32.1
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
-+.++||+|+|.|..|-.+|+.|.+.|. ++++.|.+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 4567899999999999999999999996 688888543
No 401
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.75 E-value=0.53 Score=45.66 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=28.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+||+|+|.|+.|..+|..|.+.|. ++++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 479999999999999999999997 688888543
No 402
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.74 E-value=0.44 Score=41.47 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r 38 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVAR 38 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999986 8999999999999997 5777764
No 403
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.71 E-value=0.42 Score=41.41 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=51.2
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|. |++|..+++.|++.|.. +.++..+.. ++.....+.++.. ..++..+..
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~~~~~~ 62 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSE-----------------AGAEALVAEIGAL--GGKALAVQG 62 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCch-----------------hHHHHHHHHHHhc--CCceEEEEc
Confidence 45678999975 89999999999999975 433332110 1122222333322 234556666
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.++.-...+.+.|.||.+..
T Consensus 63 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (248)
T PRK05557 63 DVSDAESVERAVDEAKAEFGGVDILVNNAG 92 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 666655555443321112346788887763
No 404
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.67 E-value=0.21 Score=49.04 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=34.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNR 59 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R 59 (292)
.+|+|+|+|-+|..+|..|+..|.| +++.+|-|.-....++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 4799999999999999999999875 57788877666666655
No 405
>PRK12746 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.25 Score=43.39 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
++++++|+|.| .|++|+++++.|++.|.. +.+.+... ..+.+...+.+... ..++..+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~~~r~-----------------~~~~~~~~~~~~~~--~~~~~~~~ 62 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGAL-VAIHYGRN-----------------KQAADETIREIESN--GGKAFLIE 62 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCC-----------------HHHHHHHHHHHHhc--CCcEEEEE
Confidence 46678999997 679999999999998864 43322111 01222233333322 23456677
Q ss_pred ccccchhhHHHHHhcCCCCC------CCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTE------GPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~------~~~DlVv~a~ 122 (292)
.++++.+.+...++.....+ .+.|+||.+.
T Consensus 63 ~D~~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~a 98 (254)
T PRK12746 63 ADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNA 98 (254)
T ss_pred cCcCCHHHHHHHHHHHHHHhccccCCCCccEEEECC
Confidence 77777666655443211111 2578888665
No 406
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.65 E-value=0.35 Score=43.37 Aligned_cols=83 Identities=17% Similarity=0.294 Sum_probs=49.5
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.++|+|.|+ |++|..+++.|++.|. ++.+++.+. .+. +.+.+.++ -++.....++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~~----~~l~~~~~-~~~~~~~~D~ 59 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSE------------------AAR----ADFEALHP-DRALARLLDV 59 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCH------------------HHH----HHHHhhcC-CCeeEEEccC
Confidence 467889976 8899999999999996 477776432 111 12222222 1344555566
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++.+.+...++.....+.+.|+||.+..
T Consensus 60 ~d~~~~~~~~~~~~~~~~~~d~vv~~ag 87 (277)
T PRK06180 60 TDFDAIDAVVADAEATFGPIDVLVNNAG 87 (277)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 6655555444322212346788887754
No 407
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.63 E-value=0.35 Score=46.73 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=61.5
Q ss_pred cEEEEcCChHHH-HHHHHHHH----hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 19 TVIVVGVGGVGS-VTAEMLTR----CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 19 ~V~vvG~GglGs-~va~~La~----~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
||+|||+|+.-+ .+...|+. .++++|.|+|-|. +..|.. =...+++.+.+..+.++++...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~-----------v~~~~~~~~~~~~~~~~v~~t~- 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI-----------VGALAKRMVKKAGLPIKVHLTT- 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH-----------HHHHHHHHHHhhCCCeEEEEeC-
Confidence 799999999865 45555554 5679999999874 222211 1234555666677777777654
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQ 140 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~ 140 (292)
+.++-+ .+.|+||.+.- ..+.|..-.+...++|+
T Consensus 68 ------d~~~al-------~gadfVi~~~~vg~~~~r~~de~i~~~~Gi 103 (419)
T cd05296 68 ------DRREAL-------EGADFVFTQIRVGGLEARALDERIPLKHGV 103 (419)
T ss_pred ------CHHHHh-------CCCCEEEEEEeeCCcchhhhhhhhHHHcCC
Confidence 333333 78999998863 44566555666777765
No 408
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.26 Score=44.25 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=27.4
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467999988 9999999999999986 57776643
No 409
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.56 E-value=0.19 Score=44.75 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=26.7
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++|+|.|+ |++|..+++.|++.|.. +++++.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~ 37 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYR-VFGTSRN 37 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 457888875 89999999999999864 7777754
No 410
>PLN03139 formate dehydrogenase; Provisional
Probab=93.54 E-value=0.3 Score=46.71 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.|.+++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 68999999999999999999999999975 566664
No 411
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.52 E-value=0.46 Score=41.50 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=50.9
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++|+|.|+ |++|+.+++.|+..|.. +.++... ...+.....+.+++.. .++..+..
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~-v~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~ 63 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSL-VVVNAKK-----------------RAEEMNETLKMVKENG--GEGIGVLA 63 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC-----------------ChHHHHHHHHHHHHcC--CeeEEEEe
Confidence 45788999985 56999999999999985 3332211 0012222223344332 23445556
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+...++.....+.+.|.||.+..
T Consensus 64 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 93 (252)
T PRK06077 64 DVSTREGCETLAKATIDRYGVADILVNNAG 93 (252)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 666655555444332222357899888764
No 412
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.52 E-value=0.18 Score=48.71 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=28.7
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD 48 (292)
.+++++++|.|+ |++|..+++.|++.|.. +.++|
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~-vi~~~ 241 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAH-VVCLD 241 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 456789999988 99999999999999975 55555
No 413
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.51 E-value=0.11 Score=47.94 Aligned_cols=33 Identities=42% Similarity=0.604 Sum_probs=30.3
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK 51 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~ 51 (292)
||.|||+|.+|+.+|..|++.|+ .++.++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 79999999999999999999996 7899999754
No 414
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.49 E-value=0.3 Score=43.59 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=25.8
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
++|+|.|+ |++|..+++.|++.|. ++.+++.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~ 34 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARK 34 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46888876 8999999999999985 57776643
No 415
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.48 E-value=0.12 Score=48.49 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=37.3
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR 59 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R 59 (292)
.+.+|+|||.|-+|..+|..|++.|. +++++|.+.+...+-.|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~ 45 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGR 45 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhc
Confidence 36789999999999999999999999 99999988886544444
No 416
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=93.48 E-value=0.62 Score=40.47 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=52.9
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++|+|.|+ |++|..+++.|+..|.. +.++.. | ...+.+.....+... ..++..+..+++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~-v~~~~~---------~--------~~~~~~~~~~~~~~~--~~~~~~~~~D~~ 61 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYT-VAVNYQ---------Q--------NLHAAQEVVNLITQA--GGKAFVLQADIS 61 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC---------C--------ChHHHHHHHHHHHhC--CCeEEEEEccCC
Confidence 46888876 78999999999999875 433211 1 012333344444443 234566777777
Q ss_pred chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+.+.+...++.-...+.+.|+||.+..
T Consensus 62 d~~~i~~~~~~~~~~~~~id~vi~~ag 88 (247)
T PRK09730 62 DENQVVAMFTAIDQHDEPLAALVNNAG 88 (247)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 766666555432222457889988775
No 417
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.48 E-value=0.3 Score=45.49 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=29.1
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.+.+|+|+|+|++|...++.+...|+ +++.+|.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999999999998 6777775
No 418
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.40 E-value=0.45 Score=41.46 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=54.1
Q ss_pred cCcEEEEcCChHHHHHHHHHH--HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLT--RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La--~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
..+|+|+|+|.+|..++..+. ..|+.-+.++|.|.- ...+.. ..+.+.
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~---~~~~~i----------------------~g~~v~----- 133 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE---KIGTKI----------------------GGIPVY----- 133 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh---hcCCEe----------------------CCeEEc-----
Confidence 468999999999999998643 456666777876531 111100 011111
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF 143 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i 143 (292)
..+++.+++.. .+.|.|+.|+...... .+.+.+.+.|+..+
T Consensus 134 --~~~~l~~li~~-----~~iD~ViIa~P~~~~~-~i~~~l~~~Gi~~i 174 (213)
T PRK05472 134 --HIDELEEVVKE-----NDIEIGILTVPAEAAQ-EVADRLVEAGIKGI 174 (213)
T ss_pred --CHHHHHHHHHH-----CCCCEEEEeCCchhHH-HHHHHHHHcCCCEE
Confidence 12455555532 4699999998876544 44566777776443
No 419
>PRK13529 malate dehydrogenase; Provisional
Probab=93.39 E-value=0.36 Score=47.96 Aligned_cols=112 Identities=7% Similarity=0.042 Sum_probs=65.5
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHH----hCC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTR----CGI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN 83 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~----~Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n 83 (292)
+|++.||+++|+|+.|..+|++|.. .|+ ++|.++|.+=+=.+ ...|+...|...+++ .+
T Consensus 292 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~-------~r~~l~~~k~~fa~~----~~ 360 (563)
T PRK13529 292 PLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTD-------DMPDLLDFQKPYARK----RE 360 (563)
T ss_pred ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeC-------CCCcchHHHHHHhhh----cc
Confidence 7889999999999999999999997 599 69999997642111 112344444444433 11
Q ss_pred CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302 84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~ 145 (292)
+ +. ..... ....++.+.++. -++|++|-++. +.-+...|...+.....|.|++
T Consensus 361 ~-~~--~~~~~-~~~~~L~e~v~~-----~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 415 (563)
T PRK13529 361 E-LA--DWDTE-GDVISLLEVVRN-----VKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFP 415 (563)
T ss_pred c-cc--ccccc-cCCCCHHHHHhc-----cCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 1 10 00000 001244455432 24588887665 3334556666666556677654
No 420
>PRK07791 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.49 Score=42.82 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=59.7
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+++++++|.|+ +|+|..+++.|++.|. ++.++|.+. + + ...+=+..+.+.+.+.+.+.. .++..+.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~---~-----~-~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 70 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV---G-----L-DGSASGGSAAQAVVDEIVAAG--GEAVANG 70 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc---c-----c-cccccchhHHHHHHHHHHhcC--CceEEEe
Confidence 366788888865 6999999999999997 466666431 0 0 000111234445555555432 3455667
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.++++.+.+.+.++.....+.+.|++|.+..
T Consensus 71 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 71 DDIADWDGAANLVDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 7777766666555443333467899888653
No 421
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.37 E-value=0.077 Score=43.82 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=53.1
Q ss_pred cEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
||+|+|+|.+|..+++.+.. .++.-..+.|. .++..+...+-..+--|+.+..+-. .+-...+......+..
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a~ll~~Ds~hg~~~~~v~~-----~~~~l~i~g~~i~~~~ 74 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLAHLLKYDSVHGRFPGEVEV-----DEDGLIVNGKKIKVLA 74 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHHHHhcccCCCCCCCCcEEE-----eCCEEEECCEEEEEEe
Confidence 79999999999999999875 34544445542 3333333322112334554332110 0111111111111111
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC 135 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~ 135 (292)
..+..++ ++.-.+.|+||+|+.-+.++.....+.
T Consensus 75 ~~~p~~~----~w~~~gvDiVie~tG~f~~~~~~~~hl 108 (149)
T smart00846 75 ERDPANL----PWKELGVDIVVECTGKFTTREKASAHL 108 (149)
T ss_pred cCChHHC----cccccCCeEEEeccccccchHHHHHHH
Confidence 1222211 111147899999999887776554443
No 422
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.37 E-value=0.5 Score=50.17 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=34.2
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELAN 56 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sN 56 (292)
..+||+|||+|.-|-.+|..|++.|.. ++++|...++.-|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccccc
Confidence 678999999999999999999999954 9999987655443
No 423
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.33 E-value=1 Score=41.30 Aligned_cols=120 Identities=19% Similarity=0.200 Sum_probs=71.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
.||.+||+|..|..+|.+|.+.| -.+++.|.+.=......+ -.+......+ ++++++ -++-|.-.. +
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r~~~ka~~~~~-~~Ga~~a~s~-~eaa~~------aDvVitmv~----~ 67 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNRTPEKAAELLA-AAGATVAASP-AEAAAE------ADVVITMLP----D 67 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeCChhhhhHHHH-HcCCcccCCH-HHHHHh------CCEEEEecC----C
Confidence 47999999999999999999999 457777755321100000 0111222222 222222 244444333 2
Q ss_pred hhhHHHHHhcCCCCC---CCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCcccc
Q psy2302 98 LRKVGALAVQGSLTE---GPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSEN 150 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~---~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~~ 150 (292)
.....+.+....... .+-.++||++. ++...+.+.+...+.|..|+++-+++.
T Consensus 68 ~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg 124 (286)
T COG2084 68 DAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGG 124 (286)
T ss_pred HHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCC
Confidence 345555543211111 24567777654 577778889999999999999988863
No 424
>PRK06483 dihydromonapterin reductase; Provisional
Probab=93.32 E-value=0.3 Score=42.49 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=26.6
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.++++|.|+ |++|.++++.|++.|. ++.++|.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 34 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYR 34 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 467899986 7899999999999997 6777664
No 425
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=93.30 E-value=0.57 Score=40.86 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=54.3
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
+++++++|.| .|++|..+++.|++.|.. +++.+... ..+.+...+.+.+. ..++.....
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~-v~~~~~~~-----------------~~~~~~~~~~l~~~--~~~~~~~~~ 63 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAK-VVINYNSS-----------------KEAAENLVNELGKE--GHDVYAVQA 63 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEcCCc-----------------HHHHHHHHHHHHhc--CCeEEEEEC
Confidence 5678899996 789999999999999865 33432100 01222333344332 235666677
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++++.+.+.+.++.....+...|+||.+..
T Consensus 64 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 93 (247)
T PRK12935 64 DVSKVEDANRLVEEAVNHFGKVDILVNNAG 93 (247)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777656666555432223356899987764
No 426
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.30 E-value=0.9 Score=41.27 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=26.4
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+|+|.|. |.+|+.++..|++.|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6899985 9999999999999985 68877753
No 427
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.29 E-value=0.65 Score=41.78 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=29.8
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.+.+|+|.|+|++|..+++.+...|+.+++.+|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 5679999999999999999888899988888763
No 428
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.29 E-value=0.14 Score=46.74 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=29.1
Q ss_pred HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD 48 (292)
.+++++|+|||-| -+|..++..|...| ..+++.+
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~g-AtVtv~h 188 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAG-ASVSVCH 188 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCC-CEEEEEe
Confidence 7889999999999 99999999999887 4466653
No 429
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.25 E-value=0.4 Score=47.86 Aligned_cols=103 Identities=11% Similarity=0.070 Sum_probs=64.7
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHH-----hCC------CeEEEEeCCcccccCCCCCccCcCC-CCChHHHHHHHHHHh
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTR-----CGI------GKLILFDYDKVELANMNRLFFQPDQ-CGLSKVEAARITLQN 81 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~-----~Gv------g~i~lvD~D~V~~sNl~R~~~~~~d-iG~~Ka~a~~~~l~~ 81 (292)
+|++.||+++|+|+.|..+|++|.. .|+ ++|.++|.+=+=.. +..+ +-..|...+++
T Consensus 318 ~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~-------~r~~~l~~~k~~fa~~---- 386 (581)
T PLN03129 318 DLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTK-------SRKDSLQPFKKPFAHD---- 386 (581)
T ss_pred chhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeC-------CCCccChHHHHHHHhh----
Confidence 7899999999999999999999998 477 79999997632111 1112 44445544443
Q ss_pred hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302 82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES 145 (292)
Q Consensus 82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~ 145 (292)
.+. ..++.+.++. -++|++|-++. +.-+..+|...+.....|.|++
T Consensus 387 -~~~------------~~~L~e~v~~-----vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFa 434 (581)
T PLN03129 387 -HEP------------GASLLEAVKA-----IKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFA 434 (581)
T ss_pred -ccc------------CCCHHHHHhc-----cCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 110 0234444421 24788887764 3345556666666666677764
No 430
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.21 E-value=0.68 Score=42.39 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=47.3
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
+++|+|.|+ |++|+.++..|+..|. ++.+++.|.-.. ......+......-+++.+..++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~------------------~~~~~~~~~~~~~~~~~~~~~D~ 65 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDR------------------KKTDHLLALDGAKERLKLFKADL 65 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcch------------------hhHHHHHhccCCCCceEEEeCCC
Confidence 578999985 8999999999999986 455554332110 00111111001112355556667
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++.+.+.+.+ .++|+||.+.
T Consensus 66 ~d~~~~~~~~-------~~~d~vih~A 85 (325)
T PLN02989 66 LDEGSFELAI-------DGCETVFHTA 85 (325)
T ss_pred CCchHHHHHH-------cCCCEEEEeC
Confidence 6656666655 5688888775
No 431
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.21 E-value=0.59 Score=46.10 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=32.7
Q ss_pred hcCcEEEEcCChHHHHHHHHHHH--hCCCeEEEEeCCcccccCCCC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTR--CGIGKLILFDYDKVELANMNR 59 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~--~Gvg~i~lvD~D~V~~sNl~R 59 (292)
..+||+|||.|.-|.+.|..|++ .| .+++|+|... .+-.+.|
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p-~pgGlvr 68 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLP-TPFGLVR 68 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCC-CCcceEe
Confidence 36789999999999999999997 45 4799999665 2334444
No 432
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.20 E-value=0.42 Score=43.81 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=66.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
.+|.|||+|.+|..++..|++.|. +++++|.+.-....+.. .|...+....+.++ ..++-+...+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~-------~g~~~~~s~~~~~~--~aDvVi~~vp~---- 67 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVD-------KGATPAASPAQAAA--GAEFVITMLPN---- 67 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH-------cCCcccCCHHHHHh--cCCEEEEecCC----
Confidence 379999999999999999999995 68888865322211111 12112211222221 12333333322
Q ss_pred hhhHHHHHhcCCC---CCCCcceEEecc-CCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 98 LRKVGALAVQGSL---TEGPVDLVLSCV-DNFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 98 ~~~~~~~i~~~~~---~~~~~DlVv~a~-d~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
...+...+..... ....-.++|+++ -.+.....+.+...+.++.++++.+.+
T Consensus 68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g 123 (296)
T PRK15461 68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123 (296)
T ss_pred HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence 1223333321111 112334666665 456666778888888999999888765
No 433
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.19 E-value=0.67 Score=43.16 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=48.3
Q ss_pred hcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
.+++|+|.| .|.+|+.+++.|+..|. ++.+++.+. .+.+.....+. ...+++.+..+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~~~---~~~~~~~~~~D 66 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDP------------------AKSLHLLSKWK---EGDRLRLFRAD 66 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCh------------------HHHHHHHHhhc---cCCeEEEEECC
Confidence 466899998 58899999999999986 455544321 01111111111 12345566677
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+++.+.+.+.+ .++|.||.+.
T Consensus 67 l~~~~~~~~~~-------~~~d~Vih~A 87 (353)
T PLN02896 67 LQEEGSFDEAV-------KGCDGVFHVA 87 (353)
T ss_pred CCCHHHHHHHH-------cCCCEEEECC
Confidence 77656666655 4678888665
No 434
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.19 E-value=0.47 Score=45.09 Aligned_cols=35 Identities=29% Similarity=0.199 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
+.+.+|.|||+ |-+|..+++.|....-.+++.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 35679999999 999999999999754346777775
No 435
>PRK08177 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.45 Score=41.12 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=27.8
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|+|.| .|++|..+++.|++.|. ++.++|.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCC
Confidence 4688887 78999999999999997 788888543
No 436
>PLN02214 cinnamoyl-CoA reductase
Probab=93.17 E-value=1.8 Score=40.20 Aligned_cols=105 Identities=13% Similarity=0.022 Sum_probs=61.8
Q ss_pred HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
++.++|+|.|+ |.+|+.+++.|...|. +++.++.+. ++ .+.... +.+... .-+++.+..
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~-------------~~~~~~-~~~~~~--~~~~~~~~~ 67 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DD-------------PKNTHL-RELEGG--KERLILCKA 67 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hh-------------hhHHHH-HHhhCC--CCcEEEEec
Confidence 46789999998 9999999999999986 455544321 00 011111 111111 113455566
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccCC----H--------HHHHHHHHHHHHhCC-ceeecC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN----F--------EARMTINMACNQLGQ-TWFESG 146 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~----~--------~~r~~in~~~~~~~~-p~i~~~ 146 (292)
++++.+.+.+.+ .++|+||.+... + .....+-++|.+.++ .+++.+
T Consensus 68 Dl~d~~~~~~~~-------~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~S 126 (342)
T PLN02214 68 DLQDYEALKAAI-------DGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITS 126 (342)
T ss_pred CcCChHHHHHHH-------hcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 666656666655 578999887632 1 112445667777776 355543
No 437
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.16 E-value=2.1 Score=37.24 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=58.4
Q ss_pred EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302 20 VIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL 98 (292)
Q Consensus 20 V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~ 98 (292)
|+|+|+ |.+|..++..|...|.. ++.+ .|. . +. ...+.|+. ..+++. ..+..+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l----------~R~----~-----~~-~~~~~l~~--~g~~vv--~~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL----------VRD----P-----SS-DRAQQLQA--LGAEVV--EADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE----------ESS----S-----HH-HHHHHHHH--TTTEEE--ES-TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE----------Eec----c-----ch-hhhhhhhc--ccceEe--ecccCCH
Confidence 789997 99999999999996654 4331 111 1 11 12233443 245543 4455555
Q ss_pred hhHHHHHhcCCCCCCCcceEEeccCC---H--HHHHHHHHHHHHhCCceee
Q psy2302 99 RKVGALAVQGSLTEGPVDLVLSCVDN---F--EARMTINMACNQLGQTWFE 144 (292)
Q Consensus 99 ~~~~~~i~~~~~~~~~~DlVv~a~d~---~--~~r~~in~~~~~~~~p~i~ 144 (292)
+.+.+.+ .+.|.|+.++.. . .....+-++|.+.|+.++.
T Consensus 56 ~~l~~al-------~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 56 ESLVAAL-------KGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp HHHHHHH-------TTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHH-------cCCceEEeecCcchhhhhhhhhhHHHhhhccccceEE
Confidence 6666665 799999999883 2 3446678899999987653
No 438
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.13 E-value=0.38 Score=45.76 Aligned_cols=32 Identities=34% Similarity=0.613 Sum_probs=28.5
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.+|+||| .|.+|..++..|.+.|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6899998 99999999999999994 58888864
No 439
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.09 E-value=0.12 Score=43.87 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVE 53 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~ 53 (292)
+|.|+|+|..|..+|..+++.|. +++++|.+.-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHH
Confidence 69999999999999999999994 59999986543
No 440
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.06 E-value=0.5 Score=45.73 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.6
Q ss_pred cCcEEEEcCChHHHHHHHHHHHh
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRC 39 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~ 39 (292)
.-+|.|+|+|.+|+.+++.|...
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 35899999999999999888643
No 441
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.06 E-value=0.64 Score=49.51 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=30.7
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.++||+|||+|.-|-..|..|++.|. +++++|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Confidence 47999999999999999999999997 58998854
No 442
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.04 E-value=0.6 Score=45.16 Aligned_cols=36 Identities=22% Similarity=0.500 Sum_probs=30.9
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+.+++|+|+|.|+.|..+|+.|++.|. ++++.|.+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~ 38 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL 38 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 457899999999999999999999996 588888543
No 443
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.04 E-value=0.54 Score=46.28 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++++|.|+|.|+.|..+|..|.+.|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 457799999999999999999999997 68888854
No 444
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.01 E-value=0.4 Score=41.91 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=25.8
Q ss_pred HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q psy2302 15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILF 47 (292)
Q Consensus 15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lv 47 (292)
|++++++|.| .|++|.++++.|+..|.. +.++
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~ 35 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGAR-VVVN 35 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEE
Confidence 4567899997 679999999999999974 4443
No 445
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.00 E-value=0.44 Score=44.82 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=56.7
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEE-EEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLI-LFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~-lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.||+|+|+ |.+|.++++.|...-.-++. +++.+. ..|+ .+.+.+|.++... ...+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~--------------sagk--------~~~~~~~~l~~~~-~~~~ 57 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE--------------SAGK--------PVSEVHPHLRGLV-DLNL 57 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch--------------hcCC--------ChHHhCccccccC-Ccee
Confidence 37999999 99999999999976444455 556542 1121 1222223221100 0011
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCc
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV 147 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~ 147 (292)
.. .+.++++ .++|+|+.|+.+...+.++.++ .+.|+.+|+.+.
T Consensus 58 ~~-~~~~~~~-------~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 58 EP-IDEEEIA-------EDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred ec-CCHHHhh-------cCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 11 1122222 4799999999998777666654 457888887643
No 446
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.99 E-value=0.31 Score=45.03 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=28.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
++|.|||+|-.|+-+|..++.+|. .+++.|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence 589999999999999999999554 58888866
No 447
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.98 E-value=0.7 Score=42.32 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=67.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL 98 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~ 98 (292)
+|.+||+|-.|..++.+|.+.|. ++++.|.+. +..+ + .+.|-..+...++-++ ..++-+..... .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~~~-~---~~~g~~~~~s~~~~~~--~advVi~~v~~----~ 66 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VADE-L---LSLGAVSVETARQVTE--ASDIIFIMVPD----T 66 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hHHH-H---HHcCCeecCCHHHHHh--cCCEEEEeCCC----h
Confidence 69999999999999999999996 677877643 1111 1 1122222222222111 23444433332 1
Q ss_pred hhHHHHHhcCC---CCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 99 RKVGALAVQGS---LTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 99 ~~~~~~i~~~~---~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
....+.+.... ....+-.+|||++. ++.....+.+.+.++|..|+++-+.+
T Consensus 67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG 121 (292)
T PRK15059 67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG 121 (292)
T ss_pred HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 33344332110 01123467777764 56667778888999999999987765
No 448
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.98 E-value=0.15 Score=46.55 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|.|+|+|.+|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999997 699998654
No 449
>PRK06482 short chain dehydrogenase; Provisional
Probab=92.97 E-value=0.68 Score=41.30 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=48.5
Q ss_pred cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
.++|+|.| .|++|..++..|+..|. ++.+++.+. .+. +.+.+..+. ++..+..++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~------------------~~~----~~~~~~~~~-~~~~~~~D~ 57 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGD-RVAATVRRP------------------DAL----DDLKARYGD-RLWVLQLDV 57 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHH----HHHHHhccC-ceEEEEccC
Confidence 35789998 48999999999999986 466655321 011 122222221 455666677
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
++.+.+.+.+.+....+.+.|+||.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~id~vi~~a 84 (276)
T PRK06482 58 TDSAAVRAVVDRAFAALGRIDVVVSNA 84 (276)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 665555544432111124679998875
No 450
>PRK06123 short chain dehydrogenase; Provisional
Probab=92.97 E-value=0.61 Score=40.64 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=51.8
Q ss_pred cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302 17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI 95 (292)
Q Consensus 17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i 95 (292)
++.++|.|+ |++|+.+++.|++.|.. +.+.+... ..+.....+.+.+.+ .++..+..++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~-vv~~~~~~-----------------~~~~~~~~~~l~~~~--~~~~~~~~Dl 61 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYA-VCLNYLRN-----------------RDAAEAVVQAIRRQG--GEALAVAADV 61 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCe-EEEecCCC-----------------HHHHHHHHHHHHhCC--CcEEEEEecc
Confidence 456888876 78999999999999864 54543211 013333444454433 2345566667
Q ss_pred cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 96 TLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++.+.+...+......+.+.|+||.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag 89 (248)
T PRK06123 62 ADEADVLRLFEAVDRELGRLDALVNNAG 89 (248)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 6656666554432223357888887763
No 451
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=92.96 E-value=0.13 Score=48.14 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEE
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILF 47 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lv 47 (292)
.|.+++|+|||+|-+|..++++|...|+.++++.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~ 204 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFC 204 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEE
Confidence 4788999999999999999999999999999994
No 452
>PRK06046 alanine dehydrogenase; Validated
Probab=92.95 E-value=0.67 Score=43.15 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=53.0
Q ss_pred hcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
...+|.|+|+|..|...+..|.. .++.++.++|.+. .|++.+++++++.. .+++..+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~------------------~~~~~~~~~~~~~~-~~~v~~~--- 185 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK------------------SSAEKFVERMSSVV-GCDVTVA--- 185 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH------------------HHHHHHHHHHHhhc-CceEEEe---
Confidence 35789999999999999999984 4788898877544 36666666665443 2344332
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNF 125 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~ 125 (292)
+++++.+ . .|+|+.||.+.
T Consensus 186 ----~~~~~~l-------~-aDiVv~aTps~ 204 (326)
T PRK06046 186 ----EDIEEAC-------D-CDILVTTTPSR 204 (326)
T ss_pred ----CCHHHHh-------h-CCEEEEecCCC
Confidence 2344443 4 99999999763
No 453
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.92 E-value=1.2 Score=42.54 Aligned_cols=108 Identities=23% Similarity=0.338 Sum_probs=60.0
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
+..+|+|+|. |.+|+.+++.|...|. ++++++.+.-. +. ++. ..+.+....+.+ +....+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~---~~---------~~~----~~~~~~~~~~~v--~~v~~D 119 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG---IR---------GKN----GKEDTKKELPGA--EVVFGD 119 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh---cc---------ccc----hhhHHhhhcCCc--eEEEee
Confidence 4568999986 9999999999999886 46666533210 00 000 011111223333 345556
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccCCH------------HHHHHHHHHHHHhCCc-eeec
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNF------------EARMTINMACNQLGQT-WFES 145 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~------------~~r~~in~~~~~~~~p-~i~~ 145 (292)
+++.+.+...++... .++|+||.|.... .....+-++|.+.++. ++..
T Consensus 120 l~d~~~l~~~~~~~~---~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 120 VTDADSLRKVLFSEG---DPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCCHHHHHHHHHHhC---CCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 666566666653210 1689999875321 1123445667777764 4443
No 454
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=92.92 E-value=1.3 Score=45.29 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=28.5
Q ss_pred HHHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 13 EHIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 13 ~~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
..-++++|+|.| .|-+|+++++.|...|=-+++.+|.
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 345678999998 5999999999999864235666664
No 455
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.92 E-value=0.65 Score=49.65 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=30.4
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
.++|+|||.|.-|-..|..|++.|. +++|+|...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 4689999999999999999999996 699998653
No 456
>PLN02712 arogenate dehydrogenase
Probab=92.91 E-value=0.61 Score=47.76 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=28.5
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
..+|.|||+|.+|..++..|.+.|+ ++..+|.+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~ 84 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRS 84 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999985 67777754
No 457
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.91 E-value=0.51 Score=45.49 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=32.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR 59 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R 59 (292)
++|.|+|+|-+|..+|..|+..| -+++.+|.|.-....+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~ 44 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINR 44 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHC
Confidence 68999999999999999999999 468888865543333433
No 458
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=92.90 E-value=0.19 Score=47.79 Aligned_cols=38 Identities=34% Similarity=0.446 Sum_probs=33.1
Q ss_pred cCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVEL 54 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~ 54 (292)
...|+|||.|-+|+.+|..|++. |..+++|+|.+.+-.
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~ 68 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGG 68 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccC
Confidence 44799999999999999999985 877899999887654
No 459
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=92.90 E-value=0.1 Score=51.22 Aligned_cols=35 Identities=31% Similarity=0.622 Sum_probs=31.3
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.+++++|+|+|+|++|..++..|+..|+ +++++|.
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3578899999999999999999999998 8888764
No 460
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.89 E-value=0.35 Score=46.56 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=58.1
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
.|.+++|.|+|.|.+|..+|+.|...|. ++..+|... + .. . ..+ +.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~-------~-----~~---------------~-~~~--~~--- 193 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED-------K-----LP---------------L-GNA--RQ--- 193 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc-------c-----cc---------------c-CCc--ee---
Confidence 6899999999999999999999999887 566666311 0 00 0 011 10
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHh---CCceeecC
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQL---GQTWFESG 146 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~---~~p~i~~~ 146 (292)
...+++++ ..+|+|+.+.. +.+++.++|+..... +.-+|+.+
T Consensus 194 ----~~~l~ell-------~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 194 ----VGSLEELL-------AQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred ----cCCHHHHH-------hhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 12455555 67899888765 567888887754443 33455553
No 461
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.89 E-value=0.85 Score=46.46 Aligned_cols=35 Identities=34% Similarity=0.602 Sum_probs=31.1
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
..++|+|||.|..|-..|..|++.|. +++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 47999999999999999999999998 589988543
No 462
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.88 E-value=0.56 Score=36.55 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=46.5
Q ss_pred cCChHHHHHHHHHHHh----CCCeEEEEeCC-cccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302 24 GVGGVGSVTAEMLTRC----GIGKLILFDYD-KVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL 98 (292)
Q Consensus 24 G~GglGs~va~~La~~----Gvg~i~lvD~D-~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~ 98 (292)
|+|.+|+.+++.|.+. ++.-..+.|.+ .++.. ..... +...+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~----------------------~~~~~-~~~~~~--------- 48 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKD----------------------WAASF-PDEAFT--------- 48 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETT----------------------HHHHH-THSCEE---------
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhh----------------------hhhhc-cccccc---------
Confidence 8999999999999976 45556666655 11110 11111 111111
Q ss_pred hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302 99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG 146 (292)
Q Consensus 99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~ 146 (292)
.+++++++. .+.|+||+|+.......++. .+.++|+.+|.+.
T Consensus 49 ~~~~~~~~~-----~~~dvvVE~t~~~~~~~~~~-~~L~~G~~VVt~n 90 (117)
T PF03447_consen 49 TDLEELIDD-----PDIDVVVECTSSEAVAEYYE-KALERGKHVVTAN 90 (117)
T ss_dssp SSHHHHHTH-----TT-SEEEE-SSCHHHHHHHH-HHHHTTCEEEES-
T ss_pred CCHHHHhcC-----cCCCEEEECCCchHHHHHHH-HHHHCCCeEEEEC
Confidence 344555521 27999999987766655443 5566788777653
No 463
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.83 E-value=0.6 Score=42.46 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=62.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL 98 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~ 98 (292)
+|.|||+|.+|+.++..|++.|. +++++|.+.-....+.. .|...+....+.+. ..++-+...+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~-------~g~~~~~~~~~~~~--~aDivi~~vp~~---- 66 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLA-------AGAVTAETARQVTE--QADVIFTMVPDS---- 66 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH-------CCCcccCCHHHHHh--cCCEEEEecCCH----
Confidence 58999999999999999999996 68888765321111111 12111111112221 234444443321
Q ss_pred hhHHHHHhcCC---CCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 99 RKVGALAVQGS---LTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 99 ~~~~~~i~~~~---~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
......+.... ....+-.+||+++. .+.....+.+.+.+.++.|+++.+.+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g 121 (291)
T TIGR01505 67 PQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSG 121 (291)
T ss_pred HHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCC
Confidence 22222221100 01123456777544 44455567778888888888876543
No 464
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.83 E-value=0.13 Score=51.14 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=31.0
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
+++++|+|+|+||+|..++..|+..|+ ++++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567899999999999999999999999 8998764
No 465
>PLN02712 arogenate dehydrogenase
Probab=92.81 E-value=0.88 Score=46.64 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=30.7
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.++..+|.|||+|.+|..+++.|...|. ++..+|.+
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~ 401 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRS 401 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECC
Confidence 4577899999999999999999999885 67777753
No 466
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=92.81 E-value=0.71 Score=44.43 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=29.1
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.+++++|+|.|+ |++|.++++.|++.|. ++.++|.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r 210 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTS 210 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 457889999987 8999999999999997 5666654
No 467
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.79 E-value=0.39 Score=46.45 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=24.2
Q ss_pred cEEEEcCChHHHHHHH--HHH---HhCCCeEEEEeCCc
Q psy2302 19 TVIVVGVGGVGSVTAE--MLT---RCGIGKLILFDYDK 51 (292)
Q Consensus 19 ~V~vvG~GglGs~va~--~La---~~Gvg~i~lvD~D~ 51 (292)
||+|||+|++|...+. .++ .....++.|+|-|.
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~ 39 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE 39 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH
Confidence 7999999999998666 454 22225899998654
No 468
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.79 E-value=0.17 Score=46.21 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=31.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccc
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVEL 54 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~ 54 (292)
.|+|||.|-.|..+|..|++.|. +++|+|.+.+.-
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999998 899999995543
No 469
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.79 E-value=1.2 Score=41.25 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=29.6
Q ss_pred hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.+.+|+|.|+|++|..+++.+...|+..+..+|.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 3679999999999999999999999987777664
No 470
>PLN02477 glutamate dehydrogenase
Probab=92.78 E-value=0.1 Score=50.24 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=32.9
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
.|+.++|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 6788999999999999999999999998766687754
No 471
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.78 E-value=0.16 Score=48.41 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=30.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|+|||.|-+|..+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999995 799999876
No 472
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=92.77 E-value=0.74 Score=42.73 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=48.9
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~ 96 (292)
++|+|.|+ |.+|+++++.|...|...+.++|... ...++. .+....+..+++.+..+++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~-~~~~~~-------------------~~~~~~~~~~~~~~~~Dl~ 61 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGNLM-------------------SLAPVAQSERFAFEKVDIC 61 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCc-cccchh-------------------hhhhcccCCceEEEECCCc
Confidence 47999986 78999999999999977676766321 000100 0111111223445566676
Q ss_pred chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 97 LLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
+.+.+...++. .++|.||.+.
T Consensus 62 d~~~~~~~~~~-----~~~D~Vih~A 82 (355)
T PRK10217 62 DRAELARVFTE-----HQPDCVMHLA 82 (355)
T ss_pred ChHHHHHHHhh-----cCCCEEEECC
Confidence 65666666632 2589888876
No 473
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.76 E-value=1.2 Score=41.98 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=28.1
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
++++|+|.|. |-+|++++..|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4678999987 9999999999999885 5777774
No 474
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.75 E-value=0.26 Score=45.53 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=50.3
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC--CCeEEEEe
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP--DVTIEVHN 92 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np--~v~v~~~~ 92 (292)
....+|+|+|-|-+|.+.|+....+| .+++++|... +||+++.- .-++++.-
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~-------------------------~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNI-------------------------DRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccC-CeeEEEecCH-------------------------HHHhhhhHhhCceeEEEE
Confidence 45789999999999999999999888 5688988643 22322211 22333332
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
++..++++.+ .++|+||.++-
T Consensus 220 ---st~~~iee~v-------~~aDlvIgaVL 240 (371)
T COG0686 220 ---STPSNIEEAV-------KKADLVIGAVL 240 (371)
T ss_pred ---cCHHHHHHHh-------hhccEEEEEEE
Confidence 2346777665 68999999874
No 475
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=92.75 E-value=1.9 Score=39.94 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=25.7
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
++|+|.|+ |.+|+++++.|...|. +++.+|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence 47899986 8899999999999986 5666664
No 476
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.74 E-value=0.16 Score=46.87 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.4
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
+.+|+|+|+|++|+.+|..|+++| .++++++.+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 458999999999999999999999 5677877654
No 477
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.72 E-value=0.14 Score=48.70 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=31.0
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.|++++|.|||+|.+|+.+|+.|...|+. +...|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 68999999999999999999999999985 556664
No 478
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.71 E-value=0.47 Score=44.12 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=28.6
Q ss_pred cCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D 50 (292)
..+|+|+|+|++|..+++.+.+ .|..+++.+|.+
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~ 198 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKH 198 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence 5799999999999999988886 577788888753
No 479
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=92.70 E-value=0.88 Score=42.17 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=47.6
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
||+|.|+ |.+|+.+++.|...|...+..+|.... ..+. +.+..+.+..+++.+..++++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~Dl~d 61 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTY-AGNL-------------------ESLADVSDSERYVFEHADICD 61 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCc-cchH-------------------HHHHhcccCCceEEEEecCCC
Confidence 6899986 999999999999998765555553110 0000 111111122334555666766
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
.+.+...++. .++|+||.+..
T Consensus 62 ~~~~~~~~~~-----~~~d~vih~A~ 82 (352)
T PRK10084 62 RAELDRIFAQ-----HQPDAVMHLAA 82 (352)
T ss_pred HHHHHHHHHh-----cCCCEEEECCc
Confidence 5666666532 25788887763
No 480
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.70 E-value=0.22 Score=45.49 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~ 49 (292)
.|++++|+|+|-|. +|..++.+|...|. .+++.+.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs 191 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHR 191 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEEC
Confidence 68899999999999 99999999998774 6777653
No 481
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.68 E-value=0.36 Score=46.60 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=30.5
Q ss_pred HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++++|+|+|.|++|-.+|+.|++.|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 467899999999999999999999996 58887754
No 482
>PRK06523 short chain dehydrogenase; Provisional
Probab=92.68 E-value=0.43 Score=42.05 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=31.3
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 577899999986 8999999999999997 588877653
No 483
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=92.67 E-value=0.38 Score=44.36 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=51.0
Q ss_pred hcCcEEEEcCChHHH-HHHHHHHHhC--CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 16 RTLTVIVVGVGGVGS-VTAEMLTRCG--IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 16 ~~~~V~vvG~GglGs-~va~~La~~G--vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
+..||.|||+|+.+. ..+..+...+ +.-..++|.+. .|++.+++. ++ +. ..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~------------------~~a~~~a~~----~~-~~-~~~- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP------------------ERAEAFAEE----FG-IA-KAY- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH------------------HHHHHHHHH----cC-CC-ccc-
Confidence 356899999998775 4777777766 35555555443 344444432 21 11 111
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW 142 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~ 142 (292)
.+++++++. .+.|+|+.|+.+. ....+...+.+.|+++
T Consensus 57 ------~~~~~ll~~-----~~iD~V~Iatp~~-~H~e~~~~AL~aGkhV 94 (342)
T COG0673 57 ------TDLEELLAD-----PDIDAVYIATPNA-LHAELALAALEAGKHV 94 (342)
T ss_pred ------CCHHHHhcC-----CCCCEEEEcCCCh-hhHHHHHHHHhcCCEE
Confidence 456666642 4589999998663 2223334455555543
No 484
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=92.65 E-value=0.5 Score=43.62 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=32.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCC
Q psy2302 19 TVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANM 57 (292)
Q Consensus 19 ~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl 57 (292)
+|.|||+||-|+.++..|.+.|+. ++..+|.|.-.+..+
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~ 42 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKS 42 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcC
Confidence 699999999999999999999985 567888888555443
No 485
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=92.64 E-value=0.9 Score=41.11 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=62.5
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEE---EEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLI---LFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~---lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~ 93 (292)
..||.|||||.+|..++..|..-+...+. +.|.+.-... .+- +..++-.--+.|....|++-++.-..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~----~~~-----~~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPP----ALA-----GRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHH----Hhh-----ccCcccCCHHHHhhcCCCEEEECCCH
Confidence 35899999999999999998764432222 3332210000 110 11111111223334557766665443
Q ss_pred cccchhhHHHHHhcCCCCCCCcceEEeccC---CHHHHHHHHHHHHHhCC-ceeecCc
Q psy2302 94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD---NFEARMTINMACNQLGQ-TWFESGV 147 (292)
Q Consensus 94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d---~~~~r~~in~~~~~~~~-p~i~~~~ 147 (292)
..-. +....+|+ .+.|+++.++. +...+..+.+.|.+.+. -++.+|.
T Consensus 73 ~av~-e~~~~iL~------~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 73 QAIA-EHAEGCLT------AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred HHHH-HHHHHHHh------cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChH
Confidence 2221 22233442 47899887754 45677888888888775 4444443
No 486
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=92.62 E-value=0.16 Score=47.38 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=30.6
Q ss_pred HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48 (292)
Q Consensus 13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD 48 (292)
..|++++|.|||+|.+|..+|.+|..+|+ ++.+.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 57899999999999999999999999998 455544
No 487
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.57 E-value=0.19 Score=45.90 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=29.3
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
-++|.|||+|..|+.+|..|++.|. +++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3689999999999999999999996 68888865
No 488
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=92.56 E-value=0.12 Score=46.41 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=32.4
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.|+.+||+|.|.|.+|+.+|+.|...|..-+.+.|.
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 578899999999999999999999999877768774
No 489
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.54 E-value=0.81 Score=41.67 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=26.9
Q ss_pred cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302 17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD 50 (292)
Q Consensus 17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D 50 (292)
+++|+|.| +|.+|+.+++.|...|. ++++++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 57899998 59999999999999986 45555543
No 490
>PRK09134 short chain dehydrogenase; Provisional
Probab=92.52 E-value=0.9 Score=40.04 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=53.2
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~ 94 (292)
.+++++|.|+ |++|..+++.|++.|.. +.+++... ..+.+.+.+.++... .++..+..+
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~-v~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~D 67 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFD-VAVHYNRS-----------------RDEAEALAAEIRALG--RRAVALQAD 67 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC-----------------HHHHHHHHHHHHhcC--CeEEEEEcC
Confidence 4567888865 68999999999999974 44443211 123334444454433 345566667
Q ss_pred ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302 95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD 123 (292)
Q Consensus 95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d 123 (292)
+++.+.+.+.++.....+.+.|+||.+..
T Consensus 68 l~d~~~~~~~~~~~~~~~~~iD~vi~~ag 96 (258)
T PRK09134 68 LADEAEVRALVARASAALGPITLLVNNAS 96 (258)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 76656665554332222356899888863
No 491
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.51 E-value=0.16 Score=47.54 Aligned_cols=35 Identities=31% Similarity=0.519 Sum_probs=31.1
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV 52 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V 52 (292)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 3579999999999999999999996 7999998754
No 492
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.49 E-value=0.18 Score=45.71 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=29.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~ 51 (292)
++|.|||+|-+|+.++..|++.|. +++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 479999999999999999999997 788988654
No 493
>PLN00106 malate dehydrogenase
Probab=92.48 E-value=0.2 Score=46.64 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=31.7
Q ss_pred hcCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302 16 RTLTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDK 51 (292)
Q Consensus 16 ~~~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 51 (292)
...||+|+|+ |.+|+.++..|+..|. .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4578999999 9999999999998886 6899999755
No 494
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=92.47 E-value=1.3 Score=38.57 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=57.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL 97 (292)
Q Consensus 18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~ 97 (292)
+++.|+|.|-+|+.++..|+.+|.. +++-- | -+..|..++++.+ -|. ++.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~e-V~igs----------~-------r~~~~~~a~a~~l---~~~--i~~------- 51 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHE-VIIGS----------S-------RGPKALAAAAAAL---GPL--ITG------- 51 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCe-EEEec----------C-------CChhHHHHHHHhh---ccc--ccc-------
Confidence 4789999999999999999999933 33311 0 1112333333332 232 211
Q ss_pred hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCceeecCc
Q psy2302 98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTWFESGV 147 (292)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~i~~~~ 147 (292)
.++.+.. ...|+||.++.-......+.++.-.. ++.+|+..+
T Consensus 52 ~~~~dA~--------~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tn 94 (211)
T COG2085 52 GSNEDAA--------ALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATN 94 (211)
T ss_pred CChHHHH--------hcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCC
Confidence 1232222 57999999998877777776666544 476776644
No 495
>KOG1208|consensus
Probab=92.47 E-value=1.1 Score=41.68 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=66.8
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN 92 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~ 92 (292)
.+..+.++|.|+ .|+|.++|+.|++-| .++++...|. .|++.+++.|++-.+..++..+.
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~------------------~~~~~~~~~i~~~~~~~~i~~~~ 92 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRG-AHVVLACRNE------------------ERGEEAKEQIQKGKANQKIRVIQ 92 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeCCH------------------HHHHHHHHHHHhcCCCCceEEEE
Confidence 344556666665 599999999999999 7787754432 48899999999988888998999
Q ss_pred ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302 93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV 122 (292)
Q Consensus 93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~ 122 (292)
.++++.+.+..+.+.......+.|+.|...
T Consensus 93 lDLssl~SV~~fa~~~~~~~~~ldvLInNA 122 (314)
T KOG1208|consen 93 LDLSSLKSVRKFAEEFKKKEGPLDVLINNA 122 (314)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCccEEEeCc
Confidence 998877666655443333346788887654
No 496
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.46 E-value=0.16 Score=48.46 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=31.2
Q ss_pred HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
.|++++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 68999999999999999999999999984 666675
No 497
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.45 E-value=0.16 Score=46.45 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEE
Q psy2302 14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILF 47 (292)
Q Consensus 14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lv 47 (292)
.+++++|+|||. |-+|..++.+|.+.|. .+++.
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga-tVtv~ 188 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNA-TVTLT 188 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCC-EEEEE
Confidence 789999999999 9999999999999884 56654
No 498
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.45 E-value=1.6 Score=41.05 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=29.0
Q ss_pred cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302 17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY 49 (292)
Q Consensus 17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~ 49 (292)
+.+|+|.|+|++|..+++.+...|+.+++.+|.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~ 218 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDI 218 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 578999999999999999888899888888764
No 499
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=92.43 E-value=0.46 Score=43.28 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=64.4
Q ss_pred EEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccchhhH
Q psy2302 22 VVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKV 101 (292)
Q Consensus 22 vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~~~~ 101 (292)
+||+|..|..++..|++.|. +++++|.+.-....+. +.|...+....+.++ +.++-+...+. ...+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~-------~~g~~~~~s~~~~~~--~advVil~vp~----~~~~ 66 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAV-------AAGAQAAASPAEAAE--GADRVITMLPA----GQHV 66 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHH-------HcCCeecCCHHHHHh--cCCEEEEeCCC----hHHH
Confidence 58999999999999999996 6888886542211111 112222222222222 12444443332 1233
Q ss_pred HHHHh---cCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302 102 GALAV---QGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE 149 (292)
Q Consensus 102 ~~~i~---~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~ 149 (292)
.+.+. .......+-.+||+++. .+.....+.+.+.++|+.++++-+++
T Consensus 67 ~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~G 118 (288)
T TIGR01692 67 ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSG 118 (288)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCC
Confidence 33331 00011234457777764 35566778889999999999986664
No 500
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.43 E-value=0.41 Score=46.50 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=47.5
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHh-------CC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCC-
Q psy2302 18 LTVIVVGV-GGVGSVTAEMLTRC-------GI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDV- 86 (292)
Q Consensus 18 ~~V~vvG~-GglGs~va~~La~~-------Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v- 86 (292)
.||.|+|+ |.+|+.+|..|+.. |+ .+|.++|- -+.|++.-+--|+.-. |..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~------------------~~~~a~G~amDL~daa~~~~~ 162 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSER------------------SKQALEGVAMELEDSLYPLLR 162 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcC------------------CcchhHHHHHHHHHhhhhhcC
Confidence 58999999 99999999999987 44 35666653 2234444444444433 322
Q ss_pred eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302 87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN 124 (292)
Q Consensus 87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~ 124 (292)
++.. .. .+++++ .++|+||.+...
T Consensus 163 ~v~i-----~~-~~ye~~--------kdaDiVVitAG~ 186 (444)
T PLN00112 163 EVSI-----GI-DPYEVF--------QDAEWALLIGAK 186 (444)
T ss_pred ceEE-----ec-CCHHHh--------CcCCEEEECCCC
Confidence 2211 11 334433 799999998765
Done!