RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2302
(292 letters)
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 343 bits (883), Expect = e-119
Identities = 197/279 (70%), Positives = 224/279 (80%), Gaps = 10/279 (3%)
Query: 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
MALKRMGIV +YE IRT V +VGVGGVGSVTAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 20 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 79
Query: 61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE----GPVD 116
FFQP Q GLSKV+AA TL+NINPDV EVHN+NIT + + S PVD
Sbjct: 80 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 139
Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct: 140 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 199
Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M
Sbjct: 200 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 259
Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVH 275
+KPNP CDD C ++Q+E+ + AA P+ +V+
Sbjct: 260 MKPNPQCDDRNCRKQQEEYKKKV------AALPKQEVIQ 292
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 137 bits (347), Expect = 2e-38
Identities = 50/240 (20%), Positives = 93/240 (38%), Gaps = 28/240 (11%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCGLSKVEAAR 76
V+++G GG+G+ + +L GIG++IL D D++E N+ R LF + D G +K E +
Sbjct: 120 KVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDD-VGKNKTEVIK 178
Query: 77 ITLQNINPDVTIEVHNFNIT---LLRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTIN 132
L N ++++ NI L KV D+ + D+ F +N
Sbjct: 179 RELLKRNSEISVSEIALNINDYTDLHKV-----------PEADIWVVSADHPFNLINWVN 227
Query: 133 MACNQLGQTWFESGVSENAVSGHIQLIIPGESACFAC----APPLIVASSIDEKTLKKDG 188
C + Q + + N ++ L +PG++ C+ C A + +K
Sbjct: 228 KYCVRANQPYI-NAGYVNDIAVFGPLYVPGKTGCYECQKVVADLYGSEKENIDHKIKLIN 286
Query: 189 VCAAS--LPTTMGIVAGFLVQNALKKLLKFGEVSWY---LGYSALTDFFPKMKLKPNPSC 243
+ A + +K + K+ E +G + + +P C
Sbjct: 287 SRFKPATFAPVNNVAAALCAADVIKFIGKYSEPLSLNKRIGIWSDEIKIHSQNMGRSPVC 346
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 115 bits (290), Expect = 5e-31
Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 42/238 (17%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCGLSKVEAARI 77
V+++G+GG+G+ A L G+G L+L D D V L+N+ R LF D K + ++
Sbjct: 31 VLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTED-IDRPKSQVSQQ 89
Query: 78 TLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE--GPVDLVLSCVDNFEARMTINMAC 135
L +NPD+ + +T +L + D+VL C DN R IN AC
Sbjct: 90 RLTQLNPDIQLTALQQRLT----------GEALKDAVARADVVLDCTDNMATRQEINAAC 139
Query: 136 NQLGQTWFESGVSENAV--SGHIQLIIPG-ESACFAC----APPLIVASSIDEKTLKKDG 188
L ++ +AV G + ++ P E C+ C E+ + G
Sbjct: 140 VALNTPL----ITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQE-------PERNCRTAG 188
Query: 189 VCAASLPTTMGIVAGFLVQ--NALKKLLKFGEVSWYLG-YSALTDFFPKMKLKPNPSC 243
V + MG +Q A+K L + L + + + + L+ C
Sbjct: 189 VVGP-VVGVMG-----TLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALRRASGC 240
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 117 bits (295), Expect = 6e-30
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 10/173 (5%)
Query: 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
MAL R E E + V+VVG GG+G + L G + L D D ++++N+NR
Sbjct: 1 MALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQ 60
Query: 61 F-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVL 119
F FQ G SK + A+ ++ P I ++ +I Q LV+
Sbjct: 61 FLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQ-------FILVM 113
Query: 120 SCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPP 172
+ +DN AR +N C ESG + G + I G + C+ C P
Sbjct: 114 NALDNRAARNHVNRMCLAADVPLIESGTA--GYLGQVTTIKKGVTECYECHPK 164
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 113 bits (286), Expect = 1e-29
Identities = 48/256 (18%), Positives = 91/256 (35%), Gaps = 31/256 (12%)
Query: 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCGLS 70
+ I+ V+++G G +G + L G+ K+ D V +N R L+ D CG
Sbjct: 30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFED-CGKP 88
Query: 71 KVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE-------GPVDLVLSCVD 123
K E A +L+ I P + +I ++ D++ VD
Sbjct: 89 KAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD 148
Query: 124 NFEARMTINMACNQLGQTW------FESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
+ E+R ++ N +T F+S + G+ + C+ C +
Sbjct: 149 SRESRWLPSLLSNIENKTVINAALGFDSYLV--MRHGNRDEQSSKQLGCYFCHDVVAPTD 206
Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV---------SWYLGYSAL 228
S+ ++TL D + + P ++A L + LL+ + L
Sbjct: 207 SLTDRTL--DQMSTVTRPGV-AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL 263
Query: 229 TDF-FPKMKLKPNPSC 243
+F K++ C
Sbjct: 264 HNFSILKLETPAYEHC 279
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 111 bits (279), Expect = 2e-29
Identities = 68/242 (28%), Positives = 97/242 (40%), Gaps = 49/242 (20%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCGLSKVEAARI 77
V++VG+GG+G ++ L G+G L L D+D V L+N+ R L G KVE+AR
Sbjct: 34 VLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDAT-VGQPKVESARD 92
Query: 78 TLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE--GPVDLVLSCVDNFEARMTINMAC 135
L INP + I N + L DLVL C DN R +N C
Sbjct: 93 ALTRINPHIAITPVNALLD----------DAELAALIAEHDLVLDCTDNVAVRNQLNAGC 142
Query: 136 NQLGQTWFESGVSENAV--SGHIQLIIPGE-SACFAC---APPLIVASSIDEKTLKKDGV 189
VS A+ G I + + C+ C + ++ GV
Sbjct: 143 FAAKVPL----VSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTCVEA------GV 192
Query: 190 CAASLPTTMGIVAGFL--VQ--NALKKLLKFGEVSWYLG----YSALTDFFPKMKLKPNP 241
M + G + +Q A+K L +G+ G Y A+T F +MKL NP
Sbjct: 193 --------MAPLIGVIGSLQAMEAIKMLAGYGKP--ASGKIVMYDAMTCQFREMKLMRNP 242
Query: 242 SC 243
C
Sbjct: 243 GC 244
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 113 bits (284), Expect = 2e-28
Identities = 50/258 (19%), Positives = 93/258 (36%), Gaps = 31/258 (12%)
Query: 11 NYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCG 68
N + I+ V+++G G +G + L G+ K+ D V +N R L+ D CG
Sbjct: 321 NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFED-CG 379
Query: 69 LSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE-------GPVDLVLSC 121
K E A +L+ I P + +I ++ D++
Sbjct: 380 KPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLL 439
Query: 122 VDNFEARMTINMACNQLGQTW------FESGVSENAVSGHIQLIIPGESACFACAPPLIV 175
VD+ E+R ++ N +T F+S + G+ + C+ C +
Sbjct: 440 VDSRESRWLPSLLSNIENKTVINAALGFDSYLV--MRHGNRDEQSSKQLGCYFCHDVVAP 497
Query: 176 ASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV---------SWYLGYS 226
S+ ++TL D +C + P ++A L + LL+ +
Sbjct: 498 TDSLTDRTL--DQMCTVTRPGV-AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRG 554
Query: 227 ALTDF-FPKMKLKPNPSC 243
L +F K++ C
Sbjct: 555 FLHNFSILKLETPAYEHC 572
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 106 bits (267), Expect = 1e-26
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 30/177 (16%)
Query: 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSK 71
+ T V+V+G GG+G + L G ++ + D D ++++N+NR F F+P G K
Sbjct: 36 FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 95
Query: 72 VEAARITLQNINPDVTIEVHN-----FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126
E A L + P+ + H FN T R+ +++ +D+
Sbjct: 96 AEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQ--------------FHIIVCGLDSII 141
Query: 127 ARMTINMACNQLGQTWFESGVSENAV----------SGHIQLIIPGESACFACAPPL 173
AR IN L + V G+ ++I+PG +AC C L
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLEL 198
Score = 27.2 bits (60), Expect = 6.4
Identities = 6/53 (11%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 193 SLPTTMGIVAGFLVQNALKKLL-KFGEVSWYLGYSALTDFF-PKMKLKPNPSC 243
++ +T ++A K + ++ YL ++ + + + + +C
Sbjct: 283 AVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENC 335
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 92.2 bits (228), Expect = 5e-21
Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 21/181 (11%)
Query: 9 VENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQ-C 67
E ++T V+++G+ G+G A+ + G+ + +FD + V+LA+++ FF ++
Sbjct: 19 KEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDI 78
Query: 68 GLSKVEAARITLQNINPDVTIEVHN--FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF 125
G + + R L +N V + V + ++T L + +V + +
Sbjct: 79 GQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQF-------------QVVVATDTVSL 125
Query: 126 EARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFAC---APPLIVASSIDEK 182
E ++ IN C+ G + S + G+ + + E P + S I+
Sbjct: 126 EDKVKINEFCHSSGIRFISSETR--GLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDIEPD 183
Query: 183 T 183
Sbjct: 184 G 184
Score = 89.5 bits (221), Expect = 4e-20
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 10 ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQ 63
+ + I V +VG G +G + G+ G +++ D D +E +N+NR F F+
Sbjct: 418 DFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFR 477
Query: 64 PDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123
P G +K E A + +NPD+ +++ + + + +D V + +D
Sbjct: 478 PKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWES--LDFVTNALD 535
Query: 124 NFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP 171
N +AR ++ C + ESG G+ Q+IIP + ++ +
Sbjct: 536 NVDARTYVDRRCVFYRKPLLESGT--LGTKGNTQVIIPRLTESYSSSR 581
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 91.9 bits (228), Expect = 5e-21
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 30/175 (17%)
Query: 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSK 71
+ T V+V+G GG+G + L G ++ + D D ++++N+NR F F+P G K
Sbjct: 407 FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 466
Query: 72 VEAARITLQNINPDVTIEVHN-----FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126
E A L + P+ + H FN T R+ +++ +D+
Sbjct: 467 AEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQ--------------FHIIVCGLDSII 512
Query: 127 ARMTINMACNQLGQTWFESGVSENAV----------SGHIQLIIPGESACFACAP 171
AR IN L + V G+ ++I+PG +AC C
Sbjct: 513 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTL 567
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 87.1 bits (216), Expect = 7e-20
Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 20/131 (15%)
Query: 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQC-GLSKVE 73
+R V++VG+ G+G+ A+ L G+ L + D+++V + F G ++ E
Sbjct: 34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAE 93
Query: 74 AARITLQNINPDVTIEVHNFNIT-----LLRKVGALAVQGSLTEGPVDLVLSCVDNFEAR 128
A+ QN+NP V ++V +I + D V + +
Sbjct: 94 ASLERAQNLNPMVDVKVDTEDIEKKPESFFTQ--------------FDAVCLTCCSRDVI 139
Query: 129 MTINMACNQLG 139
+ ++ C++
Sbjct: 140 VKVDQICHKNS 150
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 75.5 bits (185), Expect = 2e-15
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 9/161 (5%)
Query: 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSK 71
E + + V ++ G+ + L GIG + D ++V + FF Q G ++
Sbjct: 28 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87
Query: 72 VEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTI 131
EAA LQ +N DV+ + L +V++ + +
Sbjct: 88 AEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCR------FTVVVATQLPESTSLRL 141
Query: 132 NMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPP 172
+ G++++II +
Sbjct: 142 ADVLWNSQIPLLICRT--YGLVGYMRIIIKEHPVIESHPDN 180
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 40.2 bits (94), Expect = 1e-04
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL 79
+ VVG G +G + A +L + + D+D LA +NR+ Q L
Sbjct: 8 ICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKAL 67
Query: 80 QNINPDVTIEVHNFNIT 96
D I F +T
Sbjct: 68 GGF--DAVISAAPFFLT 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 1e-04
Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 85/302 (28%)
Query: 20 VIVVGVGGVG-SV-TAEMLTRCGIGKLILF----------DYDKVELANMNRLFFQPDQC 67
V++ GV G G + ++ + + F + + L + +L +Q D
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 68 GLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVL------SC 121
S+ + + I+ + E+ L K + L LVL
Sbjct: 213 WTSRSDHSSNIKLRIH-SIQAELRRL---LKSKPY----ENCL------LVLLNVQNAKA 258
Query: 122 VDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPP-----LIVA 176
+ F N++C L T F+ V+ + +S I + P L+
Sbjct: 259 WNAF------NLSCKILLTTRFKQ-VT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSW----YLGYSALTDFF 232
+ L ++ V + P + I+A + ++ G +W ++ LT
Sbjct: 311 LDCRPQDLPRE-VLTTN-PRRLSIIA---------ESIRDGLATWDNWKHVNCDKLTTII 359
Query: 233 PKM---KLKPNPSCDDSYCVQRQ--KEFNARPVEVKLEAAKPEA--QVVHADNDWGEYHY 285
+ L+P R+ + P + P ++ W +
Sbjct: 360 -ESSLNVLEPA--------EYRKMFDRLSVFPPSAHI----PTILLSLI-----WFDVIK 401
Query: 286 QV 287
Sbjct: 402 SD 403
Score = 35.6 bits (81), Expect = 0.020
Identities = 39/264 (14%), Positives = 75/264 (28%), Gaps = 46/264 (17%)
Query: 46 LFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGA-- 103
++ + L N N++F + + L R L + P + + +G+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------VLGSGK 163
Query: 104 --LAVQGSLTEGPVD--------LVLSCVDNFEARMTI-NMACNQLGQTWFESGVSENAV 152
+A+ L+ L L ++ E + + Q+ W + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 153 SGHIQLIIPGESACFACAP---PLIVASSI-DEKTLKK-DGVCAASLPTTMGI-VAGFLV 206
I I P L+V ++ + K + C L TT V FL
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLS 282
Query: 207 QNALKKLLKFGEVSWYLGYSALTDFFPK---MKLK--PNPSCDDSYCVQRQKEFNARPVE 261
A + S L + K + + P + P
Sbjct: 283 -AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN------------PRR 329
Query: 262 VKLEAAKPEAQVVHADNDWGEYHY 285
+ + A + DN W +
Sbjct: 330 LSIIAESIRDGLATWDN-WKHVNC 352
>3tl2_A Malate dehydrogenase; center for structural genomics of
infectious diseases, csgid dehydrogenase,
oxidoreductase, citric acid cycle; 1.70A {Bacillus
anthracis}
Length = 315
Score = 36.3 bits (85), Expect = 0.007
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVE 53
V V+G G G+ TA +L + + ++L D ++E
Sbjct: 11 VSVIGAGFTGATTAFLLAQKELADVVLVDIPQLE 44
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 35.9 bits (84), Expect = 0.011
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
LK++ + I + ++G G +GS A +L + +G + +FD +
Sbjct: 1 LKKI-SYKYNTVIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker,
ancillary protein KEFF; potassium channel regulation,
domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia
coli} PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 35.9 bits (83), Expect = 0.013
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL-FDYDKVELANM--NRLFF----QPD---QCGL 69
VI+ G G G +T +L G+ ++L D D +E ++F+ + D G
Sbjct: 7 VIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGA 66
Query: 70 SKVEAARITLQNINPDVTIEV 90
+K E + +P +++
Sbjct: 67 AKAEVLINAID--DPQTNLQL 85
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 34.8 bits (81), Expect = 0.022
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
+ G+ + LTV+V G+G VG A + G +L++ D D +A+ L
Sbjct: 164 TVAHRGL----GSLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTDTERVAHAVAL 217
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 34.8 bits (81), Expect = 0.026
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
+ ++G G +G A + +G ++LFD +
Sbjct: 10 IALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 34.4 bits (80), Expect = 0.030
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
+++VG G +G V A ++ + +G ++LFD K
Sbjct: 7 IVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 33.3 bits (77), Expect = 0.032
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 26/113 (23%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL-FDYDKVELA-NMNRLFF-----QPD---QCGL 69
++VG G VGS+ E L I +++ +V+ + L
Sbjct: 10 ALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHL 69
Query: 70 SK-----------VEAARITLQ--NINPDVTIEV---HNFNITLLRKVGALAV 106
EA I NPD+ I ++ + + + GA V
Sbjct: 70 ECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQV 122
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 34.4 bits (80), Expect = 0.035
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
+ ++G G VG TA ML G L+L
Sbjct: 2 ITILGAGKVGMATAVMLMMRGYDDLLLIARTP 33
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 34.1 bits (79), Expect = 0.040
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
V ++G G +G + + ++L+D K
Sbjct: 12 VAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 34.0 bits (79), Expect = 0.045
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
+ +VG G +G A + +G ++LFD +
Sbjct: 8 ITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A*
1uxj_A* 1uxi_A*
Length = 309
Score = 34.0 bits (79), Expect = 0.048
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
+ ++G G VGS TA L +G ++L D +
Sbjct: 5 ISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
complex, oxidoreductase; HET: A3D; 2.00A
{Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
2fm3_A
Length = 317
Score = 33.6 bits (78), Expect = 0.050
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
+ V+G G +G A ++ + + ++LFD +
Sbjct: 7 IAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.14
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 13/35 (37%)
Query: 207 QNALKKL---LKFGEVSWYLGYSALTDFFPKMKLK 238
+ ALKKL LK Y SA P + +K
Sbjct: 19 KQALKKLQASLKL-----YADDSA-----PALAIK 43
Score = 29.1 bits (64), Expect = 1.2
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 152 VSGHIQLIIPGESACFACAPPLIVASSID 180
+ ++L +SA P L + ++++
Sbjct: 25 LQASLKLYAD-DSA-----PALAIKATME 47
Score = 28.0 bits (61), Expect = 2.3
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 17/42 (40%)
Query: 69 LSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSL 110
L K++A +L+ D ALA++ ++
Sbjct: 22 LKKLQA---SLKLYADD--------------SAPALAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.30
Identities = 29/200 (14%), Positives = 56/200 (28%), Gaps = 70/200 (35%)
Query: 40 GIGKLILFD-YDKVELANMNRLFFQPDQCGLSKVEAARITLQNI---NPDVTIEVHNFNI 95
G+G D Y + A ++ ++ + ++ +I NP V + +H F
Sbjct: 1630 GMGM----DLYKTSKAAQ--DVW---NRADNHFKDTYGFSILDIVINNP-VNLTIH-FGG 1678
Query: 96 TLLRKV----GALAVQGSLTEGPVDL-VLSCVDNFEARMTINMACNQLGQTWFESGVSEN 150
+++ A+ + + + ++ T L T +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-------QF 1731
Query: 151 AVSGHIQLIIPGESACFACAPPLIVASSIDE-KTLKKDGVCAASLPTTMGIVAGF-LVQN 208
Q P + + LK G+ +P AG L
Sbjct: 1732 T-----Q--------------PALTLMEKAAFEDLKSKGL----IPAD-ATFAGHSL--- 1764
Query: 209 ALKKLLKFGEVSWYLGYSAL 228
GE Y+AL
Sbjct: 1765 --------GE------YAAL 1770
Score = 27.3 bits (60), Expect = 8.7
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 23 VGVGGVGSV--TAEML-TRCGIGKLILFDYDKVELANMNRLFF--QPDQCGLS-KVEAAR 76
+ V S+ E++ R G + + EL N P + S EA +
Sbjct: 1771 ASLADVMSIESLVEVVFYR---GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 77 ITLQNINPDVT--IEVHNFNI 95
++ + +E+ N+N+
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNV 1848
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer,
oxidoreductase; HET: NAD; 2.30A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A*
1q7g_A*
Length = 358
Score = 30.7 bits (70), Expect = 0.55
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 14/89 (15%)
Query: 16 RTLTVIVVGVGGVGSVTAEMLTR---------CGIG--KLILFDYDKVEL---ANMNRLF 61
+ + V V+G G VGS + L + + L D L ++
Sbjct: 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAAL 62
Query: 62 FQPDQCGLSKVEAARITLQNINPDVTIEV 90
L + + P + ++
Sbjct: 63 AASTTKTLPLDDLIAHLKTSPKPVILVDN 91
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 30.2 bits (69), Expect = 0.69
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
L V V G+G V + L G KL++ D +K
Sbjct: 174 LAVSVQGLGNVAKALCKKLNTEG-AKLVVTDVNK 206
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 30.2 bits (69), Expect = 0.76
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK 51
+ +VG+G VGS TA L G +++L D DK
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 30.5 bits (68), Expect = 0.78
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGI 41
+V+G G G+V A LT+ GI
Sbjct: 14 ALVIGSGYGGAVAALRLTQAGI 35
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 30.2 bits (69), Expect = 0.81
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
+ V+G G VG+ TA L + + L+L D +
Sbjct: 3 ITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 30.2 bits (69), Expect = 0.84
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
V V+G G VG+ AE + R + K +++ D
Sbjct: 3 VTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 30.0 bits (68), Expect = 0.84
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
+A+ + + + T VVG G VG E+L G K+++ D
Sbjct: 104 LAMAEVRGAD----LAERTYGVVGAGQVGGRLVEVLRGLGW-KVLVCD 146
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 29.8 bits (68), Expect = 0.89
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK 51
V ++G G VG+ A + +L+L D K
Sbjct: 10 VAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 30.0 bits (68), Expect = 0.89
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGI 41
V+VVG G GS A + G+
Sbjct: 7 VLVVGGGPGGSTAARYAAKYGL 28
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 29.9 bits (68), Expect = 1.00
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
+ L +R T+ +VGVG VGS L GI + +L D
Sbjct: 107 LMLAERDGFS----LRDRTIGIVGVGNVGSRLQTRLEALGI-RTLLCD 149
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 29.9 bits (66), Expect = 1.0
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANM 57
+V+++G G V T ++LT GI K+ + +
Sbjct: 5 SVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKL 42
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.0
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 13/67 (19%)
Query: 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILF-DYDKVELANMNR 59
A GI + YE + + V VG GS G+G + K +
Sbjct: 1022 EAFIASGITDPYEMYKYVHVSEVGNCS-GS---------GMGGVSALRGMFKDRFKDEPV 1071
Query: 60 L--FFQP 64
Q
Sbjct: 1072 QNDILQE 1078
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 30.2 bits (67), Expect = 1.0
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
V++VG G +G A L G +
Sbjct: 49 VVIVGSGPIGCTYARELVGAGYKVAMF 75
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 29.6 bits (66), Expect = 1.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
+V+G G +V+A L G+ L+L
Sbjct: 8 AVVIGTGYGAAVSALRLGEAGVQTLML 34
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 29.8 bits (66), Expect = 1.2
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVEL 54
V+++G G V + L + +
Sbjct: 26 VLLLGSGFVAQPVIDTLAANDDINVTVACRTLANA 60
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 10 ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK 51
N+E+ + VVG G +G ++ GI +L+L D +
Sbjct: 7 ANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 29.6 bits (67), Expect = 1.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK 51
+ VVG VG A + + ++ L D +
Sbjct: 24 ITVVGCDAVGMADAISVLMKDLADEVALVDVME 56
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 29.5 bits (66), Expect = 1.3
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
MA++ I V V+G+G VG A G K+ + + LA + +
Sbjct: 144 MAIQHTDF-----TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEM 197
Query: 61 FFQP 64
+P
Sbjct: 198 GMEP 201
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 29.4 bits (67), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK 51
+ V+G G VGS A + GI +++L D K
Sbjct: 10 LAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 29.4 bits (67), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
VI+VG G VGS A + GI + + + D K
Sbjct: 12 VILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 29.0 bits (66), Expect = 1.6
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
+ VVGVG VG A + + L L D +
Sbjct: 22 ITVVGVGAVGMACAISILMKDLADELALVDVIE 54
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 29.0 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK 51
V VVG G VGS A L G +L+L D D+
Sbjct: 3 VGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 29.0 bits (66), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
V ++G G VGS A L GI L++ D +K
Sbjct: 8 VALIGAGFVGSSYAFALINQGITDELVVIDVNK 40
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 29.0 bits (66), Expect = 1.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK 51
V +VG G VGS TA L G+ +++L D D+
Sbjct: 3 VGIVGSGMVGSATAYALALLGVAREVVLVDLDR 35
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase;
HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 29.0 bits (66), Expect = 1.9
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK 51
+ VG G VGS +A ++ L D +
Sbjct: 3 LGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 29.0 bits (66), Expect = 1.9
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLI 45
A K +G + ++ T+ + G G G A++++ K++
Sbjct: 201 AAKVLGW----DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVV 240
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 29.0 bits (66), Expect = 1.9
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK 51
V+V+G G VG+ L GI +++L D ++
Sbjct: 9 VVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 29.0 bits (66), Expect = 2.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLI 45
+ KR GI + + V G G VG+ T + + R G GK+
Sbjct: 202 SAKRFGI-----KMEDAKIAVQGFGNVGTFTVKNIERQG-GKVC 239
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 28.6 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
V++VG G VGS A + + GI + ++ D K
Sbjct: 8 VVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 28.6 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
V+++G G VGS A L I L++ D D
Sbjct: 9 VVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT 41
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 28.1 bits (63), Expect = 2.2
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGI 41
IV G + T L + G
Sbjct: 6 FIVCGHSILAINTILQLNQRGQ 27
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 28.7 bits (65), Expect = 2.5
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLI 45
A +++G+ + V + G G VG+ A G +++
Sbjct: 225 AAEKIGL-----QVEGARVAIQGFGNVGNAAARAFHDHG-ARVV 262
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 28.6 bits (65), Expect = 2.5
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLI 45
A+K+ GI ++ +I+ G G GS A+ + G K+I
Sbjct: 211 AVKKKGI-----KLQNARIIIQGFGNAGSFLAKFMHDAG-AKVI 248
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 28.7 bits (65), Expect = 2.5
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY--DKVELA 55
V G+GGVG G ++I D DK A
Sbjct: 193 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA 231
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET:
NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 28.6 bits (65), Expect = 2.6
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
+ ++G+G VG+ A L G+ + D ++
Sbjct: 4 IGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 28.4 bits (64), Expect = 2.7
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY--DKVELA 55
T V G+G VG G ++I D DK E A
Sbjct: 195 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA 233
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 28.4 bits (64), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD--KVELA 55
V +VGVGG+G + ++L +I D K++LA
Sbjct: 189 YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA 227
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 28.1 bits (63), Expect = 3.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGI 41
+I++G G VG+ TR G+
Sbjct: 5 LIIIGSGSVGAAAGYYATRAGL 26
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 28.3 bits (63), Expect = 3.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
+++VG G G+ TA L R G + + D
Sbjct: 9 LLIVGAGTWGTSTALHLARRGYTNVTVLD 37
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 28.4 bits (64), Expect = 3.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 20 VIVVGVGGVGSVTAEMLTRCG 40
V ++G GG+G TA L++ G
Sbjct: 497 VAIIGCGGIGFDTAMYLSQPG 517
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 28.2 bits (64), Expect = 3.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLI 45
KR G+ +R V+V G+G VG+ A R G +++
Sbjct: 208 LAKRRGL-----DLRGARVVVQGLGQVGAAVALHAERLG-MRVV 245
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 28.3 bits (62), Expect = 3.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
++++G G G A LT G L++
Sbjct: 12 IVIIGAGPTGLGAAVRLTELGYKNWHLYE 40
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 28.2 bits (64), Expect = 3.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLI 45
K++ I TV + G+G VG TA L + G K+I
Sbjct: 200 MAKKLWG-----GIEGKTVAIQGMGNVGRWTAYWLEKMG-AKVI 237
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 28.2 bits (63), Expect = 3.7
Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 26/156 (16%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKV-EAARI- 77
V++ G L + ++ D + + + F E A +
Sbjct: 118 VVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVR 176
Query: 78 --------------------TLQNINPDVTI--EVHNF-NITLLRKVGALAVQGSLTEGP 114
++ I+ V I E + NI LR GA V
Sbjct: 177 GARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISG 236
Query: 115 VDLVLSCVDNFEARMTINMACNQLGQTWFESGVSEN 150
+ S D +EA ++ + + E + E
Sbjct: 237 RLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEG 272
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 28.1 bits (63), Expect = 3.9
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLIL 46
++T V ++G G G + ++L + GI +IL
Sbjct: 1 MKT-QVAIIGAGPSGLLLGQLLHKAGIDNVIL 31
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 28.0 bits (63), Expect = 3.9
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY--DKVELA 55
T V G+GGVG G ++I DK A
Sbjct: 194 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA 232
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 28.0 bits (63), Expect = 4.0
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY--DKVELA 55
T V G+G VG G ++I D +K A
Sbjct: 198 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA 236
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial
transcription factor, transcription initiation; 2.60A
{Saccharomyces cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 28.0 bits (62), Expect = 4.0
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
++ + + Y+H L V+ + GVG +A + + L +
Sbjct: 45 FDKLDLTKTYKHPEELKVLDLY-PGVGIQSAIFYNKYCPRQYSLLEKRS 92
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 27.9 bits (63), Expect = 4.2
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY--DKVELA 55
T V G+GGVG G ++I D DK A
Sbjct: 194 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA 232
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.8 bits (62), Expect = 4.2
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 8/118 (6%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARIT 78
V+VVG G +G + + G+ + + E+ + S ++
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE-QTVIEETKTNYYNSSNGYDKLK 241
Query: 79 LQNINPDVTIE-----VHNFN--ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARM 129
DV I+ V+ I LL + G L + G T G V L +
Sbjct: 242 DSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTN 299
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 27.6 bits (61), Expect = 4.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 20 VIVVGVGGVGSVTAEMLTR 38
V+++G G +G A L
Sbjct: 19 VLILGAGNIGRAIAWDLKD 37
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 27.7 bits (62), Expect = 5.0
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLI 45
T +V G G VG + L R G K I
Sbjct: 246 TFVVQGFGNVGLHSMRYLHRFG-AKCI 271
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 27.7 bits (62), Expect = 5.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGI 41
VIVVG G +G L + G+
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGV 27
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 27.6 bits (62), Expect = 5.3
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIG-KLILFD 48
+ TV V+G G +G V ++ G G K+I +D
Sbjct: 143 LGQQTVGVMGTGHIGQVAIKLFK--GFGAKVIAYD 175
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 26.8 bits (60), Expect = 5.9
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL-FDYDKVELA 55
IV+G G LT G L + +K+EL
Sbjct: 9 YIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELL 45
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 27.4 bits (61), Expect = 6.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 20 VIVVGVGGVGSVTAEMLTRCG 40
V+VVG G VG TA + G
Sbjct: 7 VVVVGGGPVGLATAWQVAERG 27
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 27.0 bits (60), Expect = 6.2
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50
V+++G+G +G+ + L + +
Sbjct: 42 VLILGMGRIGTGAYDELRARYGKISLGIEIR 72
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family
DNA polymerase, translesion DNA synthesis, lesion
bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7
PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Length = 459
Score = 27.6 bits (61), Expect = 6.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 27 GVGSVTAEMLTRCGI 41
G+G VT +ML GI
Sbjct: 289 GIGKVTEKMLKALGI 303
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 27.4 bits (61), Expect = 6.3
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 20 VIVVGVGGVGSVTAE-MLTRCGIGKLIL 46
++ G G +G+ A ++ G+ L+L
Sbjct: 534 LVTGGTGALGAEVARHLVIERGVRNLVL 561
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 27.3 bits (60), Expect = 6.7
Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL 79
+++G G VG ++ FD ++ + G A + +
Sbjct: 16 FVILGFGCVGQALMPLIFE-------KFDIKPSQVTII-------AAEGTKVDVAQQYGV 61
Query: 80 QNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123
+T + + I + + S+ + L++ C
Sbjct: 62 SFKLQQITPQNYLEVIGSTLEENDFLIDVSIGISSLALIILCNQ 105
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 27.2 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIG-KLILFD 48
+R TV VVG+G +G V A++ G+G +I D
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIFH--GMGATVIGED 176
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 27.3 bits (61), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
V+VVG G G TA L R G+ L++
Sbjct: 8 VLVVGAGLGGLSTAMFLARQGVRVLVV 34
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 27.3 bits (61), Expect = 7.0
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD--KVELA 55
V+++G G +G +L G K+IL + + LA
Sbjct: 216 NVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLA 254
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 27.4 bits (61), Expect = 7.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
V+++G G VG A L +G L++
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVV 55
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.5 bits (59), Expect = 7.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLIL-FDYDKVE 53
V+G+G G + L R G L + + +KV
Sbjct: 8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVN 43
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 27.0 bits (60), Expect = 8.0
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 8 IVENYEHIRTLTVIV-VGVGGVGSVTAEMLTRCGIGKLILFDYDKV 52
+ + L IV VG GG G+ + K I+FD +V
Sbjct: 179 LRDCDFVFDGLESIVDVG-GGTGTTAKIICETFPKLKCIVFDRPQV 223
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 26.8 bits (60), Expect = 8.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIG-KLILFD-YDKVELANM 57
+R V VVG G +G V +++ G G K+I +D + EL
Sbjct: 144 VRDQVVGVVGTGHIGQVFMQIME--GFGAKVITYDIFRNPELEKK 186
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 27.2 bits (61), Expect = 8.3
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 172 PLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDF 231
P+I AS+I S+P+ +A LK L + G + L Y L F
Sbjct: 272 PIIFASAI------------VSIPSA---IASITNNETLKNLFRAGGFLYLLIYGLLVFF 316
Query: 232 F 232
F
Sbjct: 317 F 317
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 26.8 bits (60), Expect = 8.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD--KVELA 55
T +V+GVGG+G V ++L ++I D D ++ LA
Sbjct: 174 TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA 212
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 26.8 bits (60), Expect = 8.6
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD--KVELA 55
TV ++G G +G +T ++ G +IL K LA
Sbjct: 185 TVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLA 223
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 27.0 bits (59), Expect = 9.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
I+VG G G+V A L + L++
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLVI 30
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 26.9 bits (60), Expect = 9.2
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCG 40
MAL+ GI + V+ GGVGS +L + G
Sbjct: 136 MALEDAGIRPQDGEV----VVTGASGGVGSTAVALLHKLG 171
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 26.7 bits (60), Expect = 9.3
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
+ ++++V G G G L G K+ + D
Sbjct: 186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVD 219
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 26.8 bits (59), Expect = 9.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGI 41
+IV+G G GS A + G
Sbjct: 9 DLIVIGGGPGGSTLASFVAMRGH 31
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 26.7 bits (59), Expect = 9.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 8 IVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
I+E Y LT IV GG G+V + ++ + I FD
Sbjct: 194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFD 234
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 26.7 bits (59), Expect = 9.9
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 7 GIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
++E Y L +V GGVG+ A + K + FD
Sbjct: 191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFD 232
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 26.6 bits (59), Expect = 9.9
Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 26/112 (23%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV-ELANMNRLFFQPD--------QCGLS 70
V++ G L + ++ D + ++ F D + +
Sbjct: 12 VVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVR 70
Query: 71 K-----------VEAARITL--QNINPDVTIEV---HNFNITLLRKVGALAV 106
E L + I+ V I NI LR GA V
Sbjct: 71 GARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQV 122
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative; 2.15A
{Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
2hry_A*
Length = 615
Score = 26.9 bits (60), Expect = 10.0
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 24 GVGGVGSVTAEMLTRCGIGKLILFDYDKVEL--ANMN 58
G GGV S T+E++ + +G + D+V L +M
Sbjct: 250 GAGGVLSATSELVAKGNLG--AIVHLDRVPLREPDME 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,469,219
Number of extensions: 265076
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 132
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)