RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2302
(292 letters)
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 123 bits (309), Expect = 2e-32
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 10/165 (6%)
Query: 9 VENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQC 67
E + + V ++ G+ + L GIG + D ++V + F Q
Sbjct: 17 DHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSI 76
Query: 68 GLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEA 127
G ++ EAA LQ +N DV+ + L +V++
Sbjct: 77 GKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCR------FTVVVATQLPEST 130
Query: 128 RMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPP 172
+ + + G++++II E P
Sbjct: 131 SLRLADVLWNSQIPLLICRTY--GLVGYMRIIIK-EHPVIESHPD 172
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 113 bits (283), Expect = 2e-29
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 20/165 (12%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARIT 78
V+V+G GG+G + L G ++ + D D ++++N+NR F+P G K E A
Sbjct: 40 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 99
Query: 79 LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL 138
L + P+ + H I + +++ +D+ AR IN L
Sbjct: 100 LNDRVPNCNVVPHFNKIQ--------DFNDTFYR-QFHIIVCGLDSIIARRWINGMLISL 150
Query: 139 GQTWFESGVSENAV----------SGHIQLIIPGESACFACAPPL 173
+ V G+ ++I+PG +AC C L
Sbjct: 151 LNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLEL 195
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 86.6 bits (213), Expect = 1e-20
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 20/246 (8%)
Query: 1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
+ L+ + E ++ V++VG+GG+G ++ L G+G L L D+D V L+N+ R
Sbjct: 15 IILRGFDF-DGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQ 73
Query: 61 -FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVL 119
G KVE+AR L INP + I N + + + DLVL
Sbjct: 74 TLHSDATVGQPKVESARDALTRINPHIAITPVNALLD--------DAELAALIAEHDLVL 125
Query: 120 SCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSI 179
C DN R +N C + + G I + + C L
Sbjct: 126 DCTDNVAVRNQLNAGCFAAKVPLVSG--AAIRMEGQITVFTYQD--GEPCYRCLSRLFGE 181
Query: 180 DEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSW--YLGYSALTDFFPKMKL 237
+ T + GV + +G++ A+K L +G+ + + Y A+T F +MKL
Sbjct: 182 NALTCVEAGV----MAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKL 237
Query: 238 KPNPSC 243
NP C
Sbjct: 238 MRNPGC 243
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 35.1 bits (80), Expect = 0.003
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50
+++VG G +G V A ++ + +G ++LFD
Sbjct: 6 IVLVGSGMIGGVMATLIVQKNLGDVVLFDIV 36
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 31.6 bits (71), Expect = 0.054
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50
+ ++G G VGS TA L +G ++L D
Sbjct: 4 ISIIGAGFVGSTTAHWLAAKELGDIVLLDIV 34
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 154
Score = 31.6 bits (71), Expect = 0.060
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50
V ++G G +G + + ++L+D
Sbjct: 10 VAMIGSGMIGGTMGYLCALRELADVVLYDVV 40
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 288
Score = 32.0 bits (71), Expect = 0.072
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
+++ G G G A L + GIGK+ L +
Sbjct: 4 ILIAGAGIGGLSCALALHQAGIGKVTLLE 32
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 30.9 bits (69), Expect = 0.11
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF 61
+ G+ + LTV+V G+G VG A + G +L++ D D +A+ L
Sbjct: 16 TVAHRGL----GSLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTDTERVAHAVALG 70
Query: 62 FQP 64
Sbjct: 71 HTA 73
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 30.5 bits (67), Expect = 0.23
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELA 55
++++G G VG+ A+ L G + + D + +
Sbjct: 4 IVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMP 39
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 29.8 bits (66), Expect = 0.31
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
A+ +GI + TV V G G VG A ++++ K++ +
Sbjct: 21 AMDVLGI-----DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR 65
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 29.2 bits (64), Expect = 0.46
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
+V+++G G V T ++LT GI K+ +
Sbjct: 4 SVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL 35
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 132
Score = 28.3 bits (62), Expect = 0.52
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCG 68
+I+ G+G VG A+ L+ G ++L D DK + G
Sbjct: 3 IIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVING 50
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 28.8 bits (64), Expect = 0.53
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
+ + + VVGVG VG A + G+ L L D D
Sbjct: 15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADT 54
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 28.4 bits (63), Expect = 0.54
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYDK 51
V ++G G VG+ A + L+L D K
Sbjct: 4 VAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa
(Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 28.9 bits (64), Expect = 0.57
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 8 IVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV--ELANMNRLFFQPD 65
++E Y ++ +V GG G ++++ + K I FD +V ++ +
Sbjct: 72 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGG 131
Query: 66 QCGLSKVEAARITLQNINPDVTIE 89
S + + L+ + + + E
Sbjct: 132 DMFASVPQGDAMILKAVCHNWSDE 155
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 28.5 bits (63), Expect = 0.70
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 4/117 (3%)
Query: 16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAA 75
+ + V V+G G VGS + L Y+ V LA R D L+
Sbjct: 3 KVVNVAVIGAGVVGSAFLDQLLAMKST----ITYNLVLLAEAERSLISKDFSPLNVGSDW 58
Query: 76 RITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN 132
+ L + V + + V+N + T N
Sbjct: 59 KAALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPN 115
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate
hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}
Length = 292
Score = 28.8 bits (63), Expect = 0.78
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
V ++G G G + ++L + GI +IL
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVIL 31
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 28.5 bits (63), Expect = 0.85
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLI 45
M I+ T V G G VG + L R G K +
Sbjct: 23 SYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFG-AKCV 63
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 28.0 bits (62), Expect = 0.88
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
+ V+G G VGS A + GI + I+ + E L
Sbjct: 4 LAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVL 44
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 27.8 bits (61), Expect = 1.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
K++ I TV + G+G VG TA L + G + + D +
Sbjct: 21 MAKKLWG-----GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDING 65
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 28.0 bits (61), Expect = 1.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
+V+G G +V+A L G+ L+L
Sbjct: 5 AVVIGTGYGAAVSALRLGEAGVQTLML 31
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 27.3 bits (60), Expect = 1.4
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELAN 56
V+V+G G VG+ L GI I+ A
Sbjct: 9 VVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAI 45
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 28.0 bits (61), Expect = 1.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
+V+G G G+V A LT+ GI I+
Sbjct: 10 ALVIGSGYGGAVAALRLTQAGIPTQIV 36
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 27.8 bits (61), Expect = 1.6
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50
+K + + TV + G G V A+ L G + L D
Sbjct: 26 VMKHEN-----DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD 69
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 27.0 bits (59), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGK-LILFDYD 50
+ +VG+G VGS TA L G + ++L D D
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 26.8 bits (58), Expect = 1.7
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQC 67
V+G+G G + L R G +++ D ++ ++
Sbjct: 3 FAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIA 49
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 27.2 bits (59), Expect = 1.8
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR 59
T V+G+G G A L G ++ +D D + +
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQD 42
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 27.0 bits (59), Expect = 1.8
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 1/101 (0%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL 79
VIV+G G A RCG ++ L + + +
Sbjct: 48 VIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPR 107
Query: 80 QNINPDVTIEVHNFNITLLRKVGALA-VQGSLTEGPVDLVL 119
+ I I F T + G + + D+V+
Sbjct: 108 KVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVI 148
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 26.9 bits (60), Expect = 2.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 68 GLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ 107
GL + E A + ++ D I + N + +K G AV
Sbjct: 56 GLGEGEEAILFVKKAGADGIITIKPKNYVVAKKNGIPAVL 95
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel
Kch {Escherichia coli [TaxId: 562]}
Length = 153
Score = 26.8 bits (58), Expect = 2.3
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
IV G + T L + G ++ + + ++ + +
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR 46
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 26.5 bits (58), Expect = 2.4
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 8 IVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
+ E + + VVGVG VG A + + +
Sbjct: 11 VAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALV 51
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 27.2 bits (60), Expect = 2.6
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 21/120 (17%)
Query: 15 IRTLTVIVVGVGGVGSVTAEMLTRC----------GIGKLILFDYDKVELANMNRLFFQP 64
+ + G G + AEM+ ++ L D D L NR P
Sbjct: 23 VSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID--GLVTKNRKEMNP 80
Query: 65 DQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN 124
+K ++ + + L +GA V+G+ E + + +
Sbjct: 81 RHVQFAKDMPETTSILEV-------IRAARPGAL--IGASTVRGAFNEEVIRAMAEINER 131
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 26.9 bits (59), Expect = 3.0
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANM 57
+ L V V G+G V + L G KL++ D +K ++
Sbjct: 37 LEGLAVSVQGLGNVAKALCKKLNTEG-AKLVVTDVNKAAVSAA 78
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component,
C-domain {Escherichia coli [TaxId: 562]}
Length = 186
Score = 26.6 bits (58), Expect = 3.0
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 190 CAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL---KPNP 241
+L + A ++V AL +L K GE+ + D K + K NP
Sbjct: 133 SRENLRHHFEVDASYVVVAALGELAKRGEID----KKVVADAIAKFNIDADKVNP 183
>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 26.4 bits (57), Expect = 3.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
T +V G+GGVG G ++I D
Sbjct: 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGID 61
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 142
Score = 26.2 bits (57), Expect = 3.6
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQC 67
+ V+G G VG+ TA L + + ++ + L
Sbjct: 3 ITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP 50
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 26.1 bits (57), Expect = 3.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
V++VG G VGS A + + GI + +
Sbjct: 8 VVLVGDGAVGSSYAFAMAQQGIAEEFVIV 36
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase
{White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 26.9 bits (58), Expect = 3.8
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
V++VG G +G A L G +
Sbjct: 7 VVIVGSGPIGCTYARELVGAGYKVAMF 33
>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana
perezi) [TaxId: 8403]}
Length = 174
Score = 26.0 bits (56), Expect = 5.1
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
T V G+GGVG G ++I K
Sbjct: 30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK 62
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 25.9 bits (56), Expect = 5.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
I+VG G G+V A L + L++
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLVI 30
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 26.2 bits (57), Expect = 5.6
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK 51
++ + + Y+H L V+ + GVG +A + + L +
Sbjct: 30 FDKLDLTKTYKHPEELKVLDLY-PGVGIQSAIFYNKYCPRQYSLLEKRS 77
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 202
Score = 25.7 bits (55), Expect = 5.7
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 22 VVGVGGVGSVTAEMLTRCGIGKLILFDYD--KVELANMNRLFFQPDQCGLSKVEAARITL 79
+ G+G VG+V A L+ G ++I D K++L N + + +
Sbjct: 5 IFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGR 63
Query: 80 QNINPDVTIEVHNFNI 95
+ D V + ++
Sbjct: 64 LSGTTDFKKAVLDSDV 79
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId:
9823]}
Length = 196
Score = 25.9 bits (55), Expect = 5.8
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQC 67
+ ++G G A L R G + +F+ + Q
Sbjct: 7 IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLP 54
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 25.5 bits (55), Expect = 6.9
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGK 43
A K +G + ++ T+ + G G G A++++ K
Sbjct: 21 AAKVLGW----DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMK 58
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like
protein HI0607 {Haemophilus influenzae [TaxId: 727]}
Length = 167
Score = 25.2 bits (54), Expect = 7.1
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 8 IVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQC 67
++E Y + VIV G GG+ G KL ++ + + L+
Sbjct: 8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYIN 67
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 297
Score = 25.5 bits (54), Expect = 7.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLIL 46
VIV+G G + + +L+ G L +
Sbjct: 8 VIVLGTGITECILSGLLSVDGKKVLHI 34
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 25.1 bits (54), Expect = 7.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFD 48
+ ++G+G VG+ A L G+ +F
Sbjct: 4 IGIIGLGNVGAAVAHGLIAQGVADDYVFI 32
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 25.4 bits (54), Expect = 7.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 20 VIVVGVGGVGSVTAEMLTRCG 40
V+V+G G +G +A +L R G
Sbjct: 9 VVVLGSGVIGLSSALILARKG 29
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein
MthK {Archaeon Methanothermobacter thermautotrophicus
[TaxId: 145262]}
Length = 129
Score = 24.8 bits (53), Expect = 7.9
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 20 VIVVGVGGVGSVTAEMLTRCGI 41
V++ G L +
Sbjct: 3 VVICGWSESTLECLRELRGSEV 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,082,158
Number of extensions: 49261
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 56
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)