BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2304
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2
Length = 356
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 1 MESDIKNTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRD 60
+E TPSKKKI+I T ASNYH+EVNP+DAG DRVV+ E++K VAQ+ QL+ N QRD
Sbjct: 69 IEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRD 128
Query: 61 FK 62
FK
Sbjct: 129 FK 130
>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1
Length = 356
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 1 MESDIKNTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRD 60
+E TPSKKKI+I T ASNYH+EVNP+DAG DRVV+ E++K VAQ+ QL+ + QRD
Sbjct: 69 IEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRD 128
Query: 61 FK 62
FK
Sbjct: 129 FK 130
>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1
Length = 356
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 48/62 (77%)
Query: 1 MESDIKNTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRD 60
+E TPSKKKI+I T ASNYH+EVNP+DAG DRVV+ E++K VAQ+ QL+ + Q+D
Sbjct: 69 IEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKD 128
Query: 61 FK 62
FK
Sbjct: 129 FK 130
>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=B14D6.460 PE=3 SV=1
Length = 352
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 1 MESDIKNTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRD 60
+++ + T S +K++ AS YH+E+ P+D G YDRVVV +L+K VAQT Q+D + ++
Sbjct: 69 IDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDLSAKQR 128
Query: 61 FK 62
FK
Sbjct: 129 FK 130
>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc5 PE=1 SV=1
Length = 358
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 40/55 (72%)
Query: 8 TPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFK 62
TPS KK+ I +S +H+E+ P+D G YDRV++ EL+K+VAQ+ Q+D ++ FK
Sbjct: 75 TPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFK 129
>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum
GN=rfc3 PE=3 SV=1
Length = 347
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 6 KNTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFK 62
K+ S K I I T +S+YHIE+NP +AG YDRVV+ +IK +AQ+ +D FK
Sbjct: 74 KHPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPIDSGSLGAFK 130
>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1
Length = 354
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 8 TPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRD 60
T S +K+++ +S YH+E+ P+D G DR+V+ EL+K VAQ Q+D +D
Sbjct: 77 TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKD 129
>sp|A0JUT1|SYP_ARTS2 Proline--tRNA ligase OS=Arthrobacter sp. (strain FB24) GN=proS PE=3
SV=1
Length = 603
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 3 SDIKNTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQR 59
++I++TP+ ID + A+N + + ND G + + +KNV L P G+R
Sbjct: 253 AEIRDTPNTPTIDTLVDAANQLVPRDENDGGAW---TAADTLKNVVLAVTL-PTGER 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,163,808
Number of Sequences: 539616
Number of extensions: 1085211
Number of successful extensions: 2474
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2467
Number of HSP's gapped (non-prelim): 8
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)