Query psy2304
Match_columns 85
No_of_seqs 105 out of 408
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:17:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2035|consensus 100.0 7.8E-34 1.7E-38 221.1 6.2 81 1-81 68-148 (351)
2 KOG0991|consensus 99.6 1.6E-16 3.4E-21 123.0 1.6 70 8-81 57-134 (333)
3 KOG0990|consensus 99.4 3.2E-14 6.9E-19 112.4 1.2 72 8-81 71-152 (360)
4 KOG0989|consensus 99.4 4.2E-14 9E-19 111.3 -1.4 72 8-81 66-150 (346)
5 PRK04132 replication factor C 99.1 1.9E-11 4.1E-16 104.9 1.6 65 11-80 578-650 (846)
6 COG0470 HolB ATPase involved i 99.0 3.1E-10 6.6E-15 83.0 4.1 58 20-80 72-129 (325)
7 PLN03025 replication factor C 99.0 1E-10 2.3E-15 88.3 1.3 69 8-80 43-119 (319)
8 PF13177 DNA_pol3_delta2: DNA 98.1 5.2E-06 1.1E-10 57.9 4.1 56 20-80 66-122 (162)
9 PRK00440 rfc replication facto 97.8 6.2E-05 1.3E-09 55.2 5.5 53 22-79 69-121 (319)
10 PRK04195 replication factor C 97.8 9.1E-06 2E-10 65.0 1.1 62 8-74 48-112 (482)
11 PRK14964 DNA polymerase III su 97.7 4.8E-05 1E-09 62.4 4.6 54 20-80 83-136 (491)
12 PRK14958 DNA polymerase III su 97.7 5.2E-05 1.1E-09 62.0 4.4 50 24-80 90-139 (509)
13 PRK14956 DNA polymerase III su 97.7 4.6E-05 9.9E-10 62.7 3.8 54 20-80 88-141 (484)
14 PRK08451 DNA polymerase III su 97.6 8.5E-05 1.8E-09 61.6 5.2 51 23-80 87-137 (535)
15 PRK08769 DNA polymerase III su 97.6 7.4E-05 1.6E-09 58.1 4.0 51 25-80 78-133 (319)
16 PRK06871 DNA polymerase III su 97.6 0.00012 2.7E-09 57.1 4.8 52 24-80 76-127 (325)
17 PRK12323 DNA polymerase III su 97.5 0.0001 2.2E-09 63.2 4.2 51 23-80 94-144 (700)
18 PRK07003 DNA polymerase III su 97.5 0.00013 2.8E-09 63.5 4.5 51 23-80 89-139 (830)
19 PRK14951 DNA polymerase III su 97.5 0.00012 2.7E-09 61.5 4.2 51 23-80 94-144 (618)
20 PRK14963 DNA polymerase III su 97.4 0.00023 4.9E-09 58.3 5.0 54 20-80 83-136 (504)
21 PHA02544 44 clamp loader, smal 97.4 0.00022 4.8E-09 52.9 4.3 66 8-80 52-121 (316)
22 PRK07994 DNA polymerase III su 97.4 0.00017 3.6E-09 61.1 3.8 51 23-80 89-139 (647)
23 PRK07764 DNA polymerase III su 97.4 0.00022 4.8E-09 61.6 4.4 52 22-80 89-140 (824)
24 PRK05707 DNA polymerase III su 97.4 0.0003 6.6E-09 54.6 4.8 52 24-80 74-126 (328)
25 PRK14952 DNA polymerase III su 97.3 0.00035 7.5E-09 58.4 5.2 52 22-80 87-138 (584)
26 PRK12402 replication factor C 97.3 6.5E-05 1.4E-09 55.6 0.7 40 37-80 106-145 (337)
27 PRK14949 DNA polymerase III su 97.3 0.00021 4.6E-09 62.8 3.9 50 24-80 90-139 (944)
28 PRK14965 DNA polymerase III su 97.2 0.00048 1E-08 57.0 4.6 54 20-80 86-139 (576)
29 PRK14971 DNA polymerase III su 97.2 0.00059 1.3E-08 57.1 5.1 53 21-80 89-141 (614)
30 PRK14969 DNA polymerase III su 97.2 0.00068 1.5E-08 55.6 5.0 51 23-80 89-139 (527)
31 PRK05563 DNA polymerase III su 97.2 0.00075 1.6E-08 55.7 5.2 53 21-80 87-139 (559)
32 PRK14948 DNA polymerase III su 97.2 0.00063 1.4E-08 57.0 4.9 52 22-80 90-141 (620)
33 PRK09111 DNA polymerase III su 97.2 0.0005 1.1E-08 57.5 4.2 50 24-80 103-152 (598)
34 PRK07993 DNA polymerase III su 97.1 0.00063 1.4E-08 52.9 4.4 51 25-80 77-128 (334)
35 PRK06645 DNA polymerase III su 97.1 0.00073 1.6E-08 55.6 4.8 54 20-80 95-148 (507)
36 PRK05917 DNA polymerase III su 97.1 0.00089 1.9E-08 51.9 4.6 50 26-80 65-115 (290)
37 PRK14960 DNA polymerase III su 97.1 0.00062 1.4E-08 58.4 4.0 51 23-80 88-138 (702)
38 PRK07276 DNA polymerase III su 97.1 0.00081 1.7E-08 51.9 4.2 51 24-80 74-124 (290)
39 PRK14953 DNA polymerase III su 97.0 0.0011 2.4E-08 54.0 5.0 52 22-80 88-139 (486)
40 PRK05564 DNA polymerase III su 97.0 0.0011 2.3E-08 50.1 4.6 51 25-80 63-113 (313)
41 PRK09112 DNA polymerase III su 97.0 0.0011 2.4E-08 51.9 4.7 38 38-80 124-161 (351)
42 PRK05896 DNA polymerase III su 97.0 0.0011 2.3E-08 56.0 4.4 53 21-80 87-139 (605)
43 PRK14962 DNA polymerase III su 96.9 0.001 2.2E-08 54.1 3.5 51 23-80 87-137 (472)
44 TIGR00678 holB DNA polymerase 96.8 0.0016 3.5E-08 45.3 3.9 41 35-80 76-116 (188)
45 PRK14950 DNA polymerase III su 96.8 0.0017 3.8E-08 53.6 4.7 52 22-80 89-140 (585)
46 PRK07133 DNA polymerase III su 96.8 0.0018 3.9E-08 55.7 4.7 51 23-80 88-138 (725)
47 PRK14959 DNA polymerase III su 96.8 0.0018 4E-08 54.8 4.4 52 22-80 88-139 (624)
48 PRK06090 DNA polymerase III su 96.7 0.0023 5E-08 49.9 4.5 52 24-80 76-128 (319)
49 PRK07471 DNA polymerase III su 96.7 0.0021 4.6E-08 50.6 4.1 53 23-80 104-161 (365)
50 PRK14961 DNA polymerase III su 96.7 0.0028 6.1E-08 49.2 4.5 51 23-80 89-139 (363)
51 PRK08691 DNA polymerase III su 96.7 0.0024 5.3E-08 54.9 4.5 50 24-80 90-139 (709)
52 PRK08058 DNA polymerase III su 96.6 0.0026 5.7E-08 48.9 3.9 41 35-80 90-130 (329)
53 TIGR02397 dnaX_nterm DNA polym 96.6 0.004 8.7E-08 46.6 4.6 52 22-80 86-137 (355)
54 PRK14957 DNA polymerase III su 96.5 0.0036 7.8E-08 52.1 4.4 52 22-80 88-139 (546)
55 PRK06964 DNA polymerase III su 96.4 0.0028 6.1E-08 49.8 3.1 40 36-80 113-152 (342)
56 PRK14955 DNA polymerase III su 96.4 0.0062 1.3E-07 47.8 4.7 51 23-80 97-147 (397)
57 PRK07399 DNA polymerase III su 96.2 0.0036 7.7E-08 48.3 2.7 37 39-80 108-144 (314)
58 PRK06305 DNA polymerase III su 96.2 0.0065 1.4E-07 49.0 3.9 53 21-80 89-141 (451)
59 PRK07940 DNA polymerase III su 96.1 0.0057 1.2E-07 48.8 3.1 38 38-80 100-137 (394)
60 COG2812 DnaX DNA polymerase II 96.0 0.0049 1.1E-07 51.3 2.6 51 23-80 89-139 (515)
61 PRK06581 DNA polymerase III su 96.0 0.008 1.7E-07 46.6 3.5 42 34-80 68-109 (263)
62 PRK14970 DNA polymerase III su 95.8 0.015 3.3E-07 44.4 4.3 49 25-80 80-128 (367)
63 PRK14954 DNA polymerase III su 95.8 0.015 3.2E-07 49.1 4.5 51 23-80 97-147 (620)
64 PRK07132 DNA polymerase III su 95.4 0.02 4.3E-07 44.2 3.7 39 42-80 72-110 (299)
65 PRK08699 DNA polymerase III su 95.4 0.033 7.1E-07 43.3 4.9 54 22-80 72-133 (325)
66 PRK06647 DNA polymerase III su 95.3 0.027 5.8E-07 46.9 4.6 50 24-80 90-139 (563)
67 PRK05818 DNA polymerase III su 95.0 0.019 4.2E-07 44.1 2.5 49 27-80 60-108 (261)
68 PRK13342 recombination factor 95.0 0.033 7.2E-07 43.8 3.9 65 8-80 45-112 (413)
69 PRK13341 recombination factor 94.5 0.011 2.4E-07 50.6 0.3 66 8-80 61-129 (725)
70 KOG1969|consensus 94.2 0.066 1.4E-06 47.1 4.3 50 20-72 349-399 (877)
71 PF06733 DEAD_2: DEAD_2; Inte 89.9 0.12 2.6E-06 35.7 0.6 25 60-84 145-169 (174)
72 TIGR02928 orc1/cdc6 family rep 88.5 0.19 4.1E-06 37.9 0.7 67 8-75 49-144 (365)
73 smart00488 DEXDc2 DEAD-like he 86.2 0.43 9.2E-06 36.2 1.5 25 60-84 236-260 (289)
74 smart00489 DEXDc3 DEAD-like he 86.2 0.43 9.2E-06 36.2 1.5 25 60-84 236-260 (289)
75 cd00046 DEXDc DEAD-like helica 85.7 0.25 5.4E-06 30.1 0.0 19 59-77 102-120 (144)
76 COG1474 CDC6 Cdc6-related prot 85.3 0.31 6.7E-06 38.6 0.4 70 7-77 50-140 (366)
77 PRK11747 dinG ATP-dependent DN 81.2 0.88 1.9E-05 38.7 1.6 24 60-83 246-269 (697)
78 smart00487 DEXDc DEAD-like hel 81.2 0.38 8.3E-06 31.2 -0.5 15 60-74 129-143 (201)
79 TIGR02902 spore_lonB ATP-depen 80.9 1.9 4.1E-05 35.6 3.3 21 60-80 175-195 (531)
80 TIGR01407 dinG_rel DnaQ family 80.5 0.76 1.6E-05 39.7 1.0 25 59-83 439-463 (850)
81 smart00382 AAA ATPases associa 80.3 3.3 7.2E-05 24.9 3.6 32 40-79 66-97 (148)
82 PRK08485 DNA polymerase III su 80.2 3 6.5E-05 31.4 3.9 38 35-80 37-74 (206)
83 TIGR03117 cas_csf4 CRISPR-asso 80.2 0.88 1.9E-05 38.9 1.2 26 59-84 205-230 (636)
84 PRK08074 bifunctional ATP-depe 80.2 0.89 1.9E-05 39.8 1.3 25 59-83 454-478 (928)
85 TIGR02881 spore_V_K stage V sp 79.8 0.46 1E-05 34.9 -0.5 13 62-74 107-119 (261)
86 PF04851 ResIII: Type III rest 79.8 0.91 2E-05 29.8 1.0 17 60-76 146-162 (184)
87 CHL00095 clpC Clp protease ATP 77.3 1.5 3.3E-05 37.8 1.8 22 59-80 610-631 (821)
88 KOG1968|consensus 75.1 3.1 6.7E-05 37.0 3.2 65 9-75 367-443 (871)
89 TIGR02639 ClpA ATP-dependent C 72.7 2.3 5E-05 36.2 1.7 21 60-80 553-573 (731)
90 TIGR00604 rad3 DNA repair heli 72.5 1.8 3.9E-05 36.6 1.1 23 62-84 222-244 (705)
91 PRK00411 cdc6 cell division co 71.6 1.5 3.2E-05 33.5 0.3 65 8-73 64-151 (394)
92 COG1199 DinG Rad3-related DNA 71.1 2.2 4.9E-05 35.1 1.3 24 59-82 219-242 (654)
93 PF12774 AAA_6: Hydrolytic ATP 69.6 0.98 2.1E-05 33.6 -1.0 62 8-81 41-105 (231)
94 PRK04837 ATP-dependent RNA hel 68.8 3.4 7.3E-05 32.2 1.8 15 60-74 157-171 (423)
95 cd00009 AAA The AAA+ (ATPases 68.8 3.5 7.5E-05 25.2 1.5 19 60-78 84-102 (151)
96 PF07652 Flavi_DEAD: Flaviviru 68.0 4.2 9.1E-05 29.1 2.0 19 59-77 94-112 (148)
97 PF13401 AAA_22: AAA domain; P 68.0 1.9 4.1E-05 27.3 0.2 37 37-73 52-101 (131)
98 PRK10590 ATP-dependent RNA hel 67.6 3.4 7.5E-05 32.8 1.7 15 60-74 149-163 (456)
99 PF00176 SNF2_N: SNF2 family N 67.2 3.2 7E-05 29.6 1.3 14 60-73 134-147 (299)
100 PRK12899 secA preprotein trans 66.2 2.8 6.1E-05 37.8 1.0 17 58-74 213-229 (970)
101 PF00270 DEAD: DEAD/DEAH box h 66.0 0.74 1.6E-05 30.2 -2.0 17 60-76 119-135 (169)
102 TIGR01587 cas3_core CRISPR-ass 65.5 4.3 9.4E-05 30.5 1.8 14 62-75 126-139 (358)
103 TIGR00614 recQ_fam ATP-depende 65.0 4.1 8.8E-05 32.6 1.6 15 60-74 127-141 (470)
104 PF13558 SbcCD_C: Putative exo 64.7 5.7 0.00012 25.1 2.0 20 58-77 61-81 (90)
105 PTZ00424 helicase 45; Provisio 64.7 2.2 4.7E-05 32.5 0.0 15 60-74 170-184 (401)
106 PRK07246 bifunctional ATP-depe 64.2 3.5 7.5E-05 35.9 1.2 22 59-80 435-456 (820)
107 PRK08903 DnaA regulatory inact 64.0 3.8 8.3E-05 29.0 1.2 21 60-80 90-110 (227)
108 PHA02653 RNA helicase NPH-II; 63.8 3.4 7.3E-05 35.5 1.0 17 60-76 291-307 (675)
109 KOG0335|consensus 62.5 2.9 6.3E-05 35.0 0.4 15 60-74 226-240 (482)
110 PHA02558 uvsW UvsW helicase; P 62.0 4.1 8.9E-05 33.0 1.1 16 60-75 222-237 (501)
111 PRK11192 ATP-dependent RNA hel 61.2 2.9 6.4E-05 32.5 0.2 16 59-74 146-161 (434)
112 PRK11776 ATP-dependent RNA hel 59.6 2.9 6.3E-05 33.0 -0.1 14 60-73 147-160 (460)
113 KOG0925|consensus 59.5 6.3 0.00014 34.1 1.9 25 44-73 148-172 (699)
114 PF09848 DUF2075: Uncharacteri 58.2 4.4 9.6E-05 31.1 0.7 17 58-74 81-97 (352)
115 PTZ00110 helicase; Provisional 58.0 3.3 7E-05 34.1 -0.1 15 60-74 277-291 (545)
116 KOG0328|consensus 57.8 3 6.5E-05 33.9 -0.3 17 59-75 168-184 (400)
117 PF05496 RuvB_N: Holliday junc 57.5 8 0.00017 29.6 2.0 19 61-79 102-120 (233)
118 PLN00206 DEAD-box ATP-dependen 56.6 4.3 9.4E-05 33.0 0.4 15 60-74 270-284 (518)
119 PRK11034 clpA ATP-dependent Cl 55.7 5.6 0.00012 34.6 1.0 22 59-80 556-577 (758)
120 PRK11634 ATP-dependent RNA hel 55.6 4.5 9.7E-05 34.2 0.4 15 60-74 149-163 (629)
121 TIGR00635 ruvB Holliday juncti 54.6 6.7 0.00015 28.9 1.1 19 61-79 82-100 (305)
122 TIGR03346 chaperone_ClpB ATP-d 54.3 8.8 0.00019 33.4 1.9 22 59-80 666-687 (852)
123 KOG4284|consensus 54.2 8.4 0.00018 34.5 1.8 15 60-74 167-181 (980)
124 PF07724 AAA_2: AAA domain (Cd 53.9 7.2 0.00016 27.5 1.2 13 62-74 70-82 (171)
125 TIGR03015 pepcterm_ATPase puta 53.6 13 0.00028 26.6 2.4 18 61-78 124-141 (269)
126 KOG0331|consensus 53.5 10 0.00022 32.1 2.1 15 60-74 239-253 (519)
127 COG0513 SrmB Superfamily II DN 53.2 5.1 0.00011 32.8 0.4 15 60-74 174-188 (513)
128 PRK04537 ATP-dependent RNA hel 53.1 4.5 9.7E-05 33.6 0.0 15 60-74 159-173 (572)
129 TIGR02640 gas_vesic_GvpN gas v 53.1 8.3 0.00018 28.5 1.4 19 62-80 107-125 (262)
130 PRK01297 ATP-dependent RNA hel 52.7 4.4 9.6E-05 32.2 -0.1 15 60-74 237-251 (475)
131 PF07728 AAA_5: AAA domain (dy 52.6 11 0.00024 24.3 1.9 20 61-80 66-85 (139)
132 cd00268 DEADc DEAD-box helicas 52.4 5.1 0.00011 27.4 0.2 15 60-74 143-157 (203)
133 PRK13766 Hef nuclease; Provisi 52.1 6.4 0.00014 33.1 0.8 17 60-76 131-147 (773)
134 TIGR01128 holA DNA polymerase 51.8 24 0.00051 25.7 3.6 28 43-74 33-60 (302)
135 PF00004 AAA: ATPase family as 51.7 8 0.00017 24.1 1.0 61 8-76 7-74 (132)
136 PF07517 SecA_DEAD: SecA DEAD- 51.1 3.2 6.9E-05 31.8 -1.1 16 58-73 195-210 (266)
137 PRK11057 ATP-dependent DNA hel 50.8 8.5 0.00018 32.1 1.3 15 60-74 139-153 (607)
138 TIGR03817 DECH_helic helicase/ 50.3 7.5 0.00016 33.5 0.9 15 60-74 157-171 (742)
139 TIGR01389 recQ ATP-dependent D 50.0 9.3 0.0002 31.4 1.4 15 60-74 127-141 (591)
140 PF00158 Sigma54_activat: Sigm 49.9 9.3 0.0002 26.8 1.2 19 61-79 94-112 (168)
141 KOG3655|consensus 49.9 13 0.00028 31.4 2.2 31 20-51 109-139 (484)
142 PRK04296 thymidine kinase; Pro 48.9 13 0.00028 26.2 1.8 16 60-75 78-93 (190)
143 PRK00080 ruvB Holliday junctio 48.7 9.4 0.0002 28.9 1.1 20 60-79 102-121 (328)
144 PRK01172 ski2-like helicase; P 47.8 7.8 0.00017 32.4 0.6 15 60-74 135-149 (674)
145 KOG0338|consensus 47.1 10 0.00022 32.9 1.2 19 60-78 327-345 (691)
146 TIGR03714 secA2 accessory Sec 46.6 8 0.00017 34.0 0.5 16 58-73 193-208 (762)
147 KOG1132|consensus 45.9 12 0.00026 33.8 1.5 22 62-83 249-270 (945)
148 PRK13104 secA preprotein trans 44.9 9 0.0002 34.4 0.6 17 58-74 200-216 (896)
149 PF12846 AAA_10: AAA-like doma 44.8 16 0.00035 25.8 1.8 19 58-76 218-236 (304)
150 COG1061 SSL2 DNA or RNA helica 44.7 13 0.00029 29.8 1.5 17 60-76 146-162 (442)
151 PF13086 AAA_11: AAA domain; P 44.4 12 0.00025 25.4 1.0 17 60-76 192-208 (236)
152 PF14532 Sigma54_activ_2: Sigm 43.6 19 0.00041 23.7 1.9 19 62-80 71-89 (138)
153 TIGR03420 DnaA_homol_Hda DnaA 43.1 9.3 0.0002 26.6 0.3 15 61-75 91-105 (226)
154 PRK09200 preprotein translocas 43.0 14 0.0003 32.6 1.4 16 58-73 197-212 (790)
155 KOG0350|consensus 42.8 11 0.00023 32.6 0.7 19 60-78 295-313 (620)
156 PRK12904 preprotein translocas 41.9 12 0.00026 33.2 0.9 16 58-73 199-214 (830)
157 PRK10865 protein disaggregatio 41.7 15 0.00033 32.2 1.5 22 59-80 669-690 (857)
158 COG0466 Lon ATP-dependent Lon 41.6 16 0.00034 32.5 1.6 16 63-78 420-435 (782)
159 PRK10536 hypothetical protein; 41.6 17 0.00036 28.2 1.5 14 62-75 178-191 (262)
160 KOG1133|consensus 40.9 10 0.00022 33.8 0.3 14 62-75 350-363 (821)
161 CHL00181 cbbX CbbX; Provisiona 40.8 15 0.00034 27.8 1.3 11 62-72 124-134 (287)
162 TIGR01618 phage_P_loop phage n 40.7 5.3 0.00012 29.7 -1.2 15 60-74 81-95 (220)
163 PRK02362 ski2-like helicase; P 40.4 14 0.00031 31.3 1.1 15 60-74 137-151 (737)
164 TIGR01054 rgy reverse gyrase. 40.2 12 0.00025 34.2 0.6 15 60-74 199-213 (1171)
165 KOG1681|consensus 40.1 92 0.002 24.7 5.4 59 8-71 15-77 (292)
166 PRK05574 holA DNA polymerase I 39.7 38 0.00083 25.1 3.2 28 44-75 64-91 (340)
167 PRK05342 clpX ATP-dependent pr 39.4 13 0.00028 30.0 0.7 16 60-75 173-188 (412)
168 PF00634 BRCA2: BRCA2 repeat; 39.3 12 0.00026 20.7 0.3 14 4-17 6-19 (35)
169 KOG0347|consensus 38.9 11 0.00023 33.1 0.1 20 60-79 340-359 (731)
170 PF02562 PhoH: PhoH-like prote 38.9 19 0.00041 26.6 1.4 15 62-76 121-135 (205)
171 PRK13767 ATP-dependent helicas 38.3 12 0.00025 32.9 0.2 15 60-74 172-186 (876)
172 KOG0332|consensus 38.2 14 0.00031 30.9 0.8 15 60-74 232-246 (477)
173 KOG0342|consensus 37.7 14 0.0003 31.6 0.6 15 60-74 230-244 (543)
174 TIGR00963 secA preprotein tran 37.6 13 0.00028 32.7 0.5 22 58-79 174-195 (745)
175 PF14527 LAGLIDADG_WhiA: WhiA 36.1 17 0.00037 23.5 0.8 14 19-32 18-31 (93)
176 TIGR00647 MG103 conserved hypo 35.7 18 0.00038 28.2 0.9 25 21-47 119-143 (279)
177 COG2256 MGS1 ATPase related to 35.7 60 0.0013 27.2 4.0 52 21-80 73-124 (436)
178 PRK11664 ATP-dependent RNA hel 35.6 23 0.0005 31.1 1.6 13 60-72 116-128 (812)
179 PRK13107 preprotein translocas 35.1 17 0.00036 32.8 0.7 18 58-75 200-217 (908)
180 PRK04914 ATP-dependent helicas 35.0 18 0.00039 32.6 0.9 14 60-73 272-285 (956)
181 PRK09401 reverse gyrase; Revie 33.7 17 0.00037 33.3 0.6 15 60-74 201-215 (1176)
182 TIGR03158 cas3_cyano CRISPR-as 33.3 22 0.00048 27.5 1.1 15 60-74 145-159 (357)
183 PF13872 AAA_34: P-loop contai 32.9 20 0.00044 28.3 0.8 13 63-75 175-187 (303)
184 PRK00254 ski2-like helicase; P 32.8 24 0.00053 29.9 1.3 15 60-74 138-152 (720)
185 PRK14701 reverse gyrase; Provi 32.0 23 0.00049 33.7 1.1 15 60-74 200-214 (1638)
186 TIGR02030 BchI-ChlI magnesium 32.0 27 0.00058 27.5 1.3 19 62-80 133-151 (337)
187 KOG0343|consensus 32.0 26 0.00056 30.9 1.3 16 59-74 214-229 (758)
188 COG0079 HisC Histidinol-phosph 31.0 61 0.0013 25.5 3.2 36 25-69 150-185 (356)
189 PRK10917 ATP-dependent DNA hel 31.0 23 0.0005 30.1 0.9 16 59-74 382-397 (681)
190 KOG0345|consensus 30.6 20 0.00043 30.7 0.4 15 60-74 157-171 (567)
191 KOG0327|consensus 30.6 25 0.00053 29.1 0.9 17 58-74 167-183 (397)
192 TIGR00643 recG ATP-dependent D 29.9 29 0.00062 29.1 1.3 15 60-74 357-371 (630)
193 KOG2028|consensus 29.3 61 0.0013 27.5 3.0 51 20-77 189-239 (554)
194 TIGR02621 cas3_GSU0051 CRISPR- 29.2 24 0.00051 31.5 0.7 13 60-73 171-183 (844)
195 TIGR01970 DEAH_box_HrpB ATP-de 29.0 28 0.0006 30.7 1.1 12 60-71 113-124 (819)
196 PHA03368 DNA packaging termina 29.0 36 0.00079 30.2 1.8 20 60-79 352-371 (738)
197 KOG0745|consensus 28.8 21 0.00045 30.6 0.3 15 62-76 293-307 (564)
198 TIGR00382 clpX endopeptidase C 28.8 30 0.00065 28.1 1.2 12 63-74 184-195 (413)
199 PRK11131 ATP-dependent RNA hel 28.7 47 0.001 31.2 2.5 12 60-71 186-197 (1294)
200 PF13604 AAA_30: AAA domain; P 28.7 26 0.00055 24.8 0.7 17 59-75 92-108 (196)
201 KOG0329|consensus 28.5 21 0.00046 28.8 0.3 31 43-76 171-201 (387)
202 TIGR02903 spore_lon_C ATP-depe 28.3 41 0.00089 28.4 1.9 19 62-80 267-285 (615)
203 PRK13407 bchI magnesium chelat 28.3 33 0.00071 27.0 1.3 18 63-80 131-148 (334)
204 PF02655 ATP-grasp_3: ATP-gras 28.2 28 0.0006 23.8 0.8 10 21-30 148-157 (161)
205 PF07693 KAP_NTPase: KAP famil 27.8 36 0.00078 25.0 1.4 16 61-76 173-188 (325)
206 PF13173 AAA_14: AAA domain 27.7 35 0.00076 22.1 1.2 49 22-78 30-78 (128)
207 TIGR01650 PD_CobS cobaltochela 27.7 37 0.0008 27.0 1.5 18 62-79 136-153 (327)
208 KOG0326|consensus 27.4 27 0.00058 29.0 0.7 16 60-75 227-242 (459)
209 TIGR00763 lon ATP-dependent pr 27.3 23 0.00049 30.6 0.2 15 63-77 417-431 (775)
210 PF15650 Tox-REase-9: Restrict 26.9 37 0.00081 22.6 1.2 32 3-34 28-59 (89)
211 KOG0922|consensus 26.9 48 0.0011 29.1 2.1 12 60-71 163-174 (674)
212 PRK15115 response regulator Gl 26.8 48 0.001 25.7 2.0 18 62-79 230-247 (444)
213 PF13304 AAA_21: AAA domain; P 26.6 59 0.0013 21.1 2.1 18 62-79 259-277 (303)
214 TIGR02746 TraC-F-type type-IV 26.6 22 0.00047 30.1 0.0 19 60-78 637-657 (797)
215 TIGR02974 phageshock_pspF psp 26.3 41 0.0009 26.0 1.5 18 62-79 95-112 (329)
216 PF05707 Zot: Zonular occluden 26.3 30 0.00065 24.3 0.7 17 61-77 80-96 (193)
217 PHA02244 ATPase-like protein 26.0 50 0.0011 27.0 2.0 19 61-79 181-199 (383)
218 PF13479 AAA_24: AAA domain 25.9 36 0.00079 24.3 1.1 60 8-74 12-82 (213)
219 PRK12898 secA preprotein trans 25.7 36 0.00079 29.5 1.2 16 58-73 240-255 (656)
220 KOG1000|consensus 25.2 35 0.00075 29.8 1.0 16 58-73 306-321 (689)
221 COG1875 NYN ribonuclease and A 25.1 39 0.00085 28.2 1.2 16 60-75 351-366 (436)
222 PLN03142 Probable chromatin-re 24.9 38 0.00081 30.9 1.2 17 60-76 291-307 (1033)
223 cd02145 BluB Subfamily of the 24.8 1.2E+02 0.0027 20.9 3.6 33 35-69 18-50 (196)
224 KOG2355|consensus 24.6 39 0.00085 26.6 1.1 11 59-69 164-174 (291)
225 PRK10365 transcriptional regul 24.3 57 0.0012 25.1 1.9 17 63-79 236-252 (441)
226 TIGR00602 rad24 checkpoint pro 24.1 48 0.001 28.6 1.6 18 59-76 194-211 (637)
227 TIGR00580 mfd transcription-re 24.0 43 0.00093 30.0 1.4 16 59-74 572-587 (926)
228 CHL00081 chlI Mg-protoporyphyr 24.0 45 0.00098 26.5 1.4 18 62-79 146-163 (350)
229 TIGR00603 rad25 DNA repair hel 23.7 50 0.0011 29.0 1.7 18 59-76 374-391 (732)
230 PRK11361 acetoacetate metaboli 23.6 52 0.0011 25.5 1.6 19 62-80 239-257 (457)
231 TIGR02915 PEP_resp_reg putativ 23.3 56 0.0012 25.4 1.7 18 62-79 235-252 (445)
232 PF05872 DUF853: Bacterial pro 23.1 28 0.00061 29.5 0.0 20 60-79 255-274 (502)
233 smart00350 MCM minichromosome 22.9 50 0.0011 27.0 1.4 19 62-80 302-320 (509)
234 PF05621 TniB: Bacterial TniB 22.7 31 0.00068 27.2 0.2 13 60-72 145-157 (302)
235 PTZ00361 26 proteosome regulat 22.6 12 0.00026 30.6 -2.2 57 8-73 226-289 (438)
236 PF01637 Arch_ATPase: Archaeal 22.3 34 0.00073 23.1 0.3 12 62-73 120-131 (234)
237 PF01443 Viral_helicase1: Vira 22.2 71 0.0015 22.1 1.9 16 60-75 62-77 (234)
238 TIGR02880 cbbX_cfxQ probable R 22.0 46 0.00099 25.1 1.0 12 62-73 123-134 (284)
239 PF14069 SpoVIF: Stage VI spor 21.9 61 0.0013 20.9 1.4 20 34-53 27-46 (79)
240 PF14516 AAA_35: AAA-like doma 21.5 42 0.00091 25.8 0.7 15 63-77 130-144 (331)
241 COG1702 PhoH Phosphate starvat 21.3 57 0.0012 26.5 1.4 18 60-78 243-260 (348)
242 KOG0336|consensus 21.3 34 0.00074 29.3 0.2 14 60-73 367-380 (629)
243 COG1435 Tdk Thymidine kinase [ 21.2 1E+02 0.0022 23.2 2.7 29 42-75 69-97 (201)
244 KOG0348|consensus 21.1 56 0.0012 28.7 1.4 14 60-73 287-300 (708)
245 PRK05580 primosome assembly pr 21.0 59 0.0013 27.8 1.6 15 60-74 258-272 (679)
246 TIGR01967 DEAH_box_HrpA ATP-de 20.8 75 0.0016 29.8 2.2 12 60-71 179-190 (1283)
247 PRK10787 DNA-binding ATP-depen 20.6 40 0.00087 29.5 0.5 16 62-77 418-433 (784)
248 KOG0385|consensus 20.6 46 0.001 30.3 0.8 16 60-75 289-304 (971)
249 COG2255 RuvB Holliday junction 20.3 53 0.0011 26.6 1.1 17 60-76 103-119 (332)
250 TIGR01818 ntrC nitrogen regula 20.3 69 0.0015 24.9 1.7 19 62-80 230-248 (463)
251 TIGR02442 Cob-chelat-sub cobal 20.3 55 0.0012 27.6 1.2 19 62-80 128-146 (633)
252 PTZ00112 origin recognition co 20.2 45 0.00097 31.0 0.7 72 7-79 789-888 (1164)
253 PLN03137 ATP-dependent DNA hel 20.0 39 0.00084 31.5 0.3 15 60-74 581-595 (1195)
No 1
>KOG2035|consensus
Probab=100.00 E-value=7.8e-34 Score=221.07 Aligned_cols=81 Identities=46% Similarity=0.681 Sum_probs=78.5
Q ss_pred CccceeeCCCCCeEEEEEccccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 1 MESDIKNTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 1 ~e~~~~~t~s~k~~eI~~~~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+|+++|.||++||+||++++||||+|+||||+|++||+|||++||++||++|++..++++||||||+|||.||.|||+|.
T Consensus 68 i~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aL 147 (351)
T KOG2035|consen 68 IETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHAL 147 (351)
T ss_pred eeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred c
Q psy2304 81 S 81 (85)
Q Consensus 81 ~ 81 (85)
.
T Consensus 148 R 148 (351)
T KOG2035|consen 148 R 148 (351)
T ss_pred H
Confidence 3
No 2
>KOG0991|consensus
Probab=99.61 E-value=1.6e-16 Score=123.04 Aligned_cols=70 Identities=21% Similarity=0.129 Sum_probs=60.0
Q ss_pred CCCCCeEEEEEc--------cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTT--------ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~--------~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
.+.|||..|..+ +..-.||||+||++++ .|||..||.|||.+...+.+ .+|+|||||||+||..||+|
T Consensus 57 PG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI--DvVRn~IK~FAQ~kv~lp~g--rhKIiILDEADSMT~gAQQA 132 (333)
T KOG0991|consen 57 PGTGKTTSILCLARELLGDSYKEAVLELNASDERGI--DVVRNKIKMFAQKKVTLPPG--RHKIIILDEADSMTAGAQQA 132 (333)
T ss_pred CCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc--HHHHHHHHHHHHhhccCCCC--ceeEEEeeccchhhhHHHHH
Confidence 356888777666 5677899999999765 89999999999999876544 69999999999999999999
Q ss_pred cc
Q psy2304 80 SS 81 (85)
Q Consensus 80 ~~ 81 (85)
..
T Consensus 133 lR 134 (333)
T KOG0991|consen 133 LR 134 (333)
T ss_pred HH
Confidence 64
No 3
>KOG0990|consensus
Probab=99.42 E-value=3.2e-14 Score=112.43 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCCCCeEEEEEc---------cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCC-CCceeEEEEcCCCCCCHHHH
Q psy2304 8 TPSKKKIDIMTT---------ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNG-QRDFKGKFVARGPLVGNPWH 77 (85)
Q Consensus 8 t~s~k~~eI~~~---------~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~-~~~fKvvvLdEAD~LT~~AQ 77 (85)
.++||+..|..+ .+++.+|||+||.+ |+.+||+.||.||++++....+ ...||+|||||||+||.+||
T Consensus 71 PGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r--gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ 148 (360)
T KOG0990|consen 71 PGTGKTSTILANARDFYSPHPTTSMLLELNASDDR--GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ 148 (360)
T ss_pred CCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc--CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH
Confidence 355788777655 46889999999995 5599999999999998652221 23799999999999999999
Q ss_pred hccc
Q psy2304 78 RASS 81 (85)
Q Consensus 78 ~a~~ 81 (85)
.|..
T Consensus 149 nALR 152 (360)
T KOG0990|consen 149 NALR 152 (360)
T ss_pred HHHH
Confidence 9964
No 4
>KOG0989|consensus
Probab=99.37 E-value=4.2e-14 Score=111.32 Aligned_cols=72 Identities=22% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCCCCeEEEEEcccc---------ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCC----CCCCceeEEEEcCCCCCCH
Q psy2304 8 TPSKKKIDIMTTASN---------YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDP----NGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 8 t~s~k~~eI~~~~Sn---------~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~----~~~~~fKvvvLdEAD~LT~ 74 (85)
.++|||+.+.+.+.. ..+|+|+||++++ .|+|+.||.||+...... ...++||||||||||.||.
T Consensus 66 pGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi--svvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts 143 (346)
T KOG0989|consen 66 PGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI--SVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS 143 (346)
T ss_pred CCCcHhHHHHHHHHHhcCccccccchhhhcccccccc--cchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH
Confidence 467888887776433 3589999999655 899999999999876642 3567999999999999999
Q ss_pred HHHhccc
Q psy2304 75 PWHRASS 81 (85)
Q Consensus 75 ~AQ~a~~ 81 (85)
+||.|.+
T Consensus 144 daq~aLr 150 (346)
T KOG0989|consen 144 DAQAALR 150 (346)
T ss_pred HHHHHHH
Confidence 9999964
No 5
>PRK04132 replication factor C small subunit; Provisional
Probab=99.11 E-value=1.9e-11 Score=104.88 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=52.7
Q ss_pred CCeEEEEEccc--------cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 11 KKKIDIMTTAS--------NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 11 ~k~~eI~~~~S--------n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
|||.-+.+++. ..|+||||||.++. .+||++||++|++++++. .+||||||||||.||.+||.|.
T Consensus 578 GKTT~A~ala~~l~g~~~~~~~lElNASd~rgi--d~IR~iIk~~a~~~~~~~---~~~KVvIIDEaD~Lt~~AQnAL 650 (846)
T PRK04132 578 HNTTAALALARELFGENWRHNFLELNASDERGI--NVIREKVKEFARTKPIGG---ASFKIIFLDEADALTQDAQQAL 650 (846)
T ss_pred cHHHHHHHHHHhhhcccccCeEEEEeCCCcccH--HHHHHHHHHHHhcCCcCC---CCCEEEEEECcccCCHHHHHHH
Confidence 56655555543 34999999998554 799999999999988742 3699999999999999999985
No 6
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.01 E-value=3.1e-10 Score=82.95 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=49.1
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....++||||||.+..| ++.+.||++++..+..+. ..++|||||||||.||.+||.|.
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~-~~~~kviiidead~mt~~A~nal 129 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPL-EGGYKVVIIDEADKLTEDAANAL 129 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCC-CCCceEEEeCcHHHHhHHHHHHH
Confidence 34678999999997764 999999999998877542 23799999999999999999985
No 7
>PLN03025 replication factor C subunit; Provisional
Probab=99.00 E-value=1e-10 Score=88.31 Aligned_cols=69 Identities=20% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCCCeEEEEEc--------cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTT--------ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~--------~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
.++|||.-+..+ .+..++|+|+||.++. .++|++||.+|+....... ..+|+|||||||.||.+||.|
T Consensus 43 ~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~--~~vr~~i~~~~~~~~~~~~--~~~kviiiDE~d~lt~~aq~a 118 (319)
T PLN03025 43 PGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI--DVVRNKIKMFAQKKVTLPP--GRHKIVILDEADSMTSGAQQA 118 (319)
T ss_pred CCCCHHHHHHHHHHHHhcccCccceeeecccccccH--HHHHHHHHHHHhccccCCC--CCeEEEEEechhhcCHHHHHH
Confidence 456777544433 2456999999998654 6999999999997643221 269999999999999999988
Q ss_pred c
Q psy2304 80 S 80 (85)
Q Consensus 80 ~ 80 (85)
.
T Consensus 119 L 119 (319)
T PLN03025 119 L 119 (319)
T ss_pred H
Confidence 5
No 8
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.06 E-value=5.2e-06 Score=57.90 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=39.4
Q ss_pred cccceeEeCCCCC-CcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDA-GIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~-g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....+.+++|.+. ......-||++++.+..+ +.. .++||+||||||.||.+||.|.
T Consensus 66 ~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~-~~~----~~~KviiI~~ad~l~~~a~NaL 122 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS-PSE----GKYKVIIIDEADKLTEEAQNAL 122 (162)
T ss_dssp -CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS--TT----SSSEEEEEETGGGS-HHHHHHH
T ss_pred cCcceEEEecccccchhhHHHHHHHHHHHHHH-Hhc----CCceEEEeehHhhhhHHHHHHH
Confidence 4566788888775 244567778666666444 322 2699999999999999999985
No 9
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.76 E-value=6.2e-05 Score=55.18 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=43.4
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
..++|+|++|.+.. ..+++.|++++++.+... .+.|+|+|||+|.|+.++|.+
T Consensus 69 ~~~i~~~~~~~~~~--~~~~~~i~~~~~~~~~~~---~~~~vviiDe~~~l~~~~~~~ 121 (319)
T PRK00440 69 ENFLELNASDERGI--DVIRNKIKEFARTAPVGG---APFKIIFLDEADNLTSDAQQA 121 (319)
T ss_pred cceEEeccccccch--HHHHHHHHHHHhcCCCCC---CCceEEEEeCcccCCHHHHHH
Confidence 46899999987544 678999999999876532 258999999999999988865
No 10
>PRK04195 replication factor C large subunit; Provisional
Probab=97.75 E-value=9.1e-06 Score=65.02 Aligned_cols=62 Identities=16% Similarity=-0.015 Sum_probs=48.0
Q ss_pred CCCCCeEEEEEccc---cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCH
Q psy2304 8 TPSKKKIDIMTTAS---NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 8 t~s~k~~eI~~~~S---n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~ 74 (85)
.++|||.-+..+.. -.++|+|+||.+.. .+++..+.+.+.+.++.. .+.|+|||||||.|+.
T Consensus 48 pG~GKTtla~ala~el~~~~ielnasd~r~~--~~i~~~i~~~~~~~sl~~---~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 48 PGVGKTSLAHALANDYGWEVIELNASDQRTA--DVIERVAGEAATSGSLFG---ARRKLILLDEVDGIHG 112 (482)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcccccccH--HHHHHHHHHhhccCcccC---CCCeEEEEecCccccc
Confidence 46677765555533 24899999998654 789999999998877752 2589999999999987
No 11
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=4.8e-05 Score=62.43 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=41.4
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+..++|+||++.. ...-||+++.. +++.|..+ .|||+||||+|.||.+||.|.
T Consensus 83 ~~~Dv~eidaas~~--~vddIR~Iie~-~~~~P~~~----~~KVvIIDEah~Ls~~A~NaL 136 (491)
T PRK14964 83 NHPDVIEIDAASNT--SVDDIKVILEN-SCYLPISS----KFKVYIIDEVHMLSNSAFNAL 136 (491)
T ss_pred CCCCEEEEecccCC--CHHHHHHHHHH-HHhccccC----CceEEEEeChHhCCHHHHHHH
Confidence 45667999998653 34678887765 45556532 699999999999999999875
No 12
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=5.2e-05 Score=62.01 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=38.2
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|++|++. +...-+|++++.+... +.. .+|||+||||||.||.+||.|.
T Consensus 90 ~~eidaas~--~~v~~iR~l~~~~~~~-p~~----~~~kV~iIDE~~~ls~~a~naL 139 (509)
T PRK14958 90 LFEVDAASR--TKVEDTRELLDNIPYA-PTK----GRFKVYLIDEVHMLSGHSFNAL 139 (509)
T ss_pred EEEEccccc--CCHHHHHHHHHHHhhc-ccc----CCcEEEEEEChHhcCHHHHHHH
Confidence 799998754 3346689988876554 321 2699999999999999999874
No 13
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=4.6e-05 Score=62.70 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=39.9
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+..++|+||.+.. +...||++++.+... +.. ..|||+||||||.|+.+||.|.
T Consensus 88 ~~~dviEIdaas~~--gVd~IReL~e~l~~~-p~~----g~~KV~IIDEah~Ls~~A~NAL 141 (484)
T PRK14956 88 ISSDVLEIDAASNR--GIENIRELRDNVKFA-PMG----GKYKVYIIDEVHMLTDQSFNAL 141 (484)
T ss_pred CCccceeechhhcc--cHHHHHHHHHHHHhh-hhc----CCCEEEEEechhhcCHHHHHHH
Confidence 34568999996542 236788888776543 221 2699999999999999999985
No 14
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=8.5e-05 Score=61.60 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=38.7
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-.+|+|+++.+ ++..||++++.....+.. .++||+||||||.|+.+||.|.
T Consensus 87 dv~eldaas~~--gId~IRelie~~~~~P~~-----~~~KVvIIDEad~Lt~~A~NAL 137 (535)
T PRK08451 87 DIIEMDAASNR--GIDDIRELIEQTKYKPSM-----ARFKIFIIDEVHMLTKEAFNAL 137 (535)
T ss_pred eEEEecccccc--CHHHHHHHHHHHhhCccc-----CCeEEEEEECcccCCHHHHHHH
Confidence 35788887653 457899999876543221 1699999999999999999885
No 15
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=7.4e-05 Score=58.11 Aligned_cols=51 Identities=22% Similarity=0.122 Sum_probs=33.6
Q ss_pred eEeCCCCCCcc-----cchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 25 IEVNPNDAGIY-----DRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 25 lElnpSD~g~~-----Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+|..|++.|.. .+.-||++++.+..++.. + ++||+|||+||.|+..|++|.
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~---g--~~kV~iI~~ae~m~~~AaNaL 133 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQY---G--IAQVVIVDPADAINRAACNAL 133 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCccc---C--CcEEEEeccHhhhCHHHHHHH
Confidence 34478766532 233455555544444332 1 699999999999999999984
No 16
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00012 Score=57.08 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=40.1
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+.|.+...+...-||++++.+..++.-+ ++||+|||+||.||..||.|.
T Consensus 76 ~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g-----~~KV~iI~~a~~m~~~AaNaL 127 (325)
T PRK06871 76 FHILEPIDNKDIGVDQVREINEKVSQHAQQG-----GNKVVYIQGAERLTEAAANAL 127 (325)
T ss_pred EEEEccccCCCCCHHHHHHHHHHHhhccccC-----CceEEEEechhhhCHHHHHHH
Confidence 3456675443456688999988887775532 699999999999999999984
No 17
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0001 Score=63.15 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=39.3
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|||+++. ++..-||++++.+...... ..|||+||||+|.||..+|+|.
T Consensus 94 DviEIdAas~--~gVDdIReLie~~~~~P~~-----gr~KViIIDEah~Ls~~AaNAL 144 (700)
T PRK12323 94 DYIEMDAASN--RGVDEMAQLLDKAVYAPTA-----GRFKVYMIDEVHMLTNHAFNAM 144 (700)
T ss_pred cceEeccccc--CCHHHHHHHHHHHHhchhc-----CCceEEEEEChHhcCHHHHHHH
Confidence 5689999864 3447789988876554321 2699999999999999999874
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.00013 Score=63.47 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=38.8
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++|||+++. +....||++|+... ..+.. ..|||+||||+|.||..+|+|.
T Consensus 89 DviEIDAas~--rgVDdIReLIe~a~-~~P~~----gr~KVIIIDEah~LT~~A~NAL 139 (830)
T PRK07003 89 DYVEMDAASN--RGVDEMAALLERAV-YAPVD----ARFKVYMIDEVHMLTNHAFNAM 139 (830)
T ss_pred eEEEeccccc--ccHHHHHHHHHHHH-hcccc----CCceEEEEeChhhCCHHHHHHH
Confidence 4789999864 33467899887553 33432 2699999999999999999875
No 19
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.00012 Score=61.49 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=38.0
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-.+|+|+++. ++..-||++++. ++..+.. ..|||+||||+|.||.++|.|.
T Consensus 94 D~~eldaas~--~~Vd~iReli~~-~~~~p~~----g~~KV~IIDEvh~Ls~~a~NaL 144 (618)
T PRK14951 94 DYTELDAASN--RGVDEVQQLLEQ-AVYKPVQ----GRFKVFMIDEVHMLTNTAFNAM 144 (618)
T ss_pred ceeecCcccc--cCHHHHHHHHHH-HHhCccc----CCceEEEEEChhhCCHHHHHHH
Confidence 3578888754 334678999865 4554532 2699999999999999999874
No 20
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00023 Score=58.30 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=40.8
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+..++||||++. +....||++ +++++..+.. ..+|+|||||+|.|+.++|.|.
T Consensus 83 ~h~dv~el~~~~~--~~vd~iR~l-~~~~~~~p~~----~~~kVVIIDEad~ls~~a~naL 136 (504)
T PRK14963 83 AHPDVLEIDAASN--NSVEDVRDL-REKVLLAPLR----GGRKVYILDEAHMMSKSAFNAL 136 (504)
T ss_pred CCCceEEeccccc--CCHHHHHHH-HHHHhhcccc----CCCeEEEEECccccCHHHHHHH
Confidence 5667899999854 456789996 4555554542 2689999999999999998764
No 21
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.41 E-value=0.00022 Score=52.91 Aligned_cols=66 Identities=15% Similarity=-0.065 Sum_probs=47.0
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCC-CHHHHhcc
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLV-GNPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~L-T~~AQ~a~ 80 (85)
.++|||.-+..+. ....+++||++ +. ...+++.++++++..+.. .++|+|||||+|.| ++++|.+.
T Consensus 52 ~G~GKT~la~~l~~~~~~~~~~i~~~~-~~--~~~i~~~l~~~~~~~~~~----~~~~vliiDe~d~l~~~~~~~~L 121 (316)
T PHA02544 52 PGTGKTTVAKALCNEVGAEVLFVNGSD-CR--IDFVRNRLTRFASTVSLT----GGGKVIIIDEFDRLGLADAQRHL 121 (316)
T ss_pred CCCCHHHHHHHHHHHhCccceEeccCc-cc--HHHHHHHHHHHHHhhccc----CCCeEEEEECcccccCHHHHHHH
Confidence 4567764333332 23468999999 43 577889999999877653 25899999999999 77777653
No 22
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.00017 Score=61.09 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=37.9
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|+++++.. ...-+|++++++... +.. .+|||+||||||.||.+||.|.
T Consensus 89 D~ieidaas~~--~VddiR~li~~~~~~-p~~----g~~KV~IIDEah~Ls~~a~NAL 139 (647)
T PRK07994 89 DLIEIDAASRT--KVEDTRELLDNVQYA-PAR----GRFKVYLIDEVHMLSRHSFNAL 139 (647)
T ss_pred CceeecccccC--CHHHHHHHHHHHHhh-hhc----CCCEEEEEechHhCCHHHHHHH
Confidence 35899987532 235689988776443 321 2699999999999999999985
No 23
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.00022 Score=61.64 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=37.5
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..++|+|+.+.+ ...-||++++.+ ...+.. ..|||+||||||.||.++|.|.
T Consensus 89 ~dv~eidaas~~--~Vd~iR~l~~~~-~~~p~~----~~~KV~IIDEad~lt~~a~NaL 140 (824)
T PRK07764 89 LDVTEIDAASHG--GVDDARELRERA-FFAPAE----SRYKIFIIDEAHMVTPQGFNAL 140 (824)
T ss_pred CcEEEecccccC--CHHHHHHHHHHH-Hhchhc----CCceEEEEechhhcCHHHHHHH
Confidence 446899886543 347788866543 444432 2699999999999999999874
No 24
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0003 Score=54.57 Aligned_cols=52 Identities=23% Similarity=0.193 Sum_probs=39.2
Q ss_pred eeEeCCCCCC-cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAG-IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g-~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+.|.+.+ .+...-||++++.++.++..+ ++||+||||||.|+.+|+.|.
T Consensus 74 ~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~-----~~kv~iI~~a~~m~~~aaNaL 126 (328)
T PRK05707 74 NFVLEPEEADKTIKVDQVRELVSFVVQTAQLG-----GRKVVLIEPAEAMNRNAANAL 126 (328)
T ss_pred EEEEeccCCCCCCCHHHHHHHHHHHhhccccC-----CCeEEEECChhhCCHHHHHHH
Confidence 3566775442 245578999888777765432 699999999999999999874
No 25
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.00035 Score=58.41 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=37.9
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+|++++..+ +...||+++... ...+.. .+|||+||||||.||.+||.|.
T Consensus 87 ~dvieidaas~~--gvd~iRel~~~~-~~~P~~----~~~KVvIIDEah~Lt~~A~NAL 138 (584)
T PRK14952 87 IDVVELDAASHG--GVDDTRELRDRA-FYAPAQ----SRYRIFIVDEAHMVTTAGFNAL 138 (584)
T ss_pred ceEEEecccccc--CHHHHHHHHHHH-Hhhhhc----CCceEEEEECCCcCCHHHHHHH
Confidence 456899886543 346778866544 544432 2699999999999999999984
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.33 E-value=6.5e-05 Score=55.58 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=32.4
Q ss_pred chhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 37 RVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 37 r~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...++++++.+++..+... +.|+|||||+|.|+.++|.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~----~~~vlilDe~~~l~~~~~~~L 145 (337)
T PRK12402 106 IDNFKHVLKEYASYRPLSA----DYKTILLDNAEALREDAQQAL 145 (337)
T ss_pred HHHHHHHHHHHHhcCCCCC----CCcEEEEeCcccCCHHHHHHH
Confidence 4578888889988877632 579999999999999998754
No 27
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.00021 Score=62.83 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=38.1
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|+++++.. ...-||++++++... +.. .+|||+||||||.|+.+||.|.
T Consensus 90 viEidAas~~--kVDdIReLie~v~~~-P~~----gk~KViIIDEAh~LT~eAqNAL 139 (944)
T PRK14949 90 LIEVDAASRT--KVDDTRELLDNVQYR-PSR----GRFKVYLIDEVHMLSRSSFNAL 139 (944)
T ss_pred EEEecccccc--CHHHHHHHHHHHHhh-hhc----CCcEEEEEechHhcCHHHHHHH
Confidence 4899997642 236789999887543 321 2699999999999999999983
No 28
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.00048 Score=56.97 Aligned_cols=54 Identities=15% Similarity=0.012 Sum_probs=38.4
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+..++|+++... +...-||+++..+. ..+.. .+|||+||||+|.||.+||.|.
T Consensus 86 ~~~d~~eid~~s~--~~v~~ir~l~~~~~-~~p~~----~~~KVvIIdev~~Lt~~a~naL 139 (576)
T PRK14965 86 RSVDVFEIDGASN--TGVDDIRELRENVK-YLPSR----SRYKIFIIDEVHMLSTNAFNAL 139 (576)
T ss_pred CCCCeeeeeccCc--cCHHHHHHHHHHHH-hcccc----CCceEEEEEChhhCCHHHHHHH
Confidence 3566889986543 22345788776554 44432 2699999999999999999874
No 29
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.00059 Score=57.10 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=40.4
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+..++|+++++. +....||++++++ ++.+..+ ++|||||||||.|+.+||.|.
T Consensus 89 ~~n~~~ld~~~~--~~vd~Ir~li~~~-~~~P~~~----~~KVvIIdea~~Ls~~a~naL 141 (614)
T PRK14971 89 SYNIHELDAASN--NSVDDIRNLIEQV-RIPPQIG----KYKIYIIDEVHMLSQAAFNAF 141 (614)
T ss_pred CCceEEeccccc--CCHHHHHHHHHHH-hhCcccC----CcEEEEEECcccCCHHHHHHH
Confidence 456789998754 3457899999766 4444432 699999999999999999874
No 30
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.00068 Score=55.62 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=37.4
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|++++.. .....||+++.. ++..+.. + +|||+||||||.||.+||.|.
T Consensus 89 d~~ei~~~~~--~~vd~ir~l~~~-~~~~p~~--~--~~kVvIIDEad~ls~~a~naL 139 (527)
T PRK14969 89 DLIEVDAASN--TQVDAMRELLDN-AQYAPTR--G--RFKVYIIDEVHMLSKSAFNAM 139 (527)
T ss_pred ceeEeecccc--CCHHHHHHHHHH-HhhCccc--C--CceEEEEcCcccCCHHHHHHH
Confidence 4578887643 345778887755 4555542 2 699999999999999999874
No 31
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.00075 Score=55.71 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=39.4
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+...+|++|+.. ++..-||+++..+.. .|.. .++||+||||+|.||.+|+.|.
T Consensus 87 ~~dv~eidaas~--~~vd~ir~i~~~v~~-~p~~----~~~kViIIDE~~~Lt~~a~naL 139 (559)
T PRK05563 87 LMDVIEIDAASN--NGVDEIRDIRDKVKY-APSE----AKYKVYIIDEVHMLSTGAFNAL 139 (559)
T ss_pred CCCeEEeecccc--CCHHHHHHHHHHHhh-Cccc----CCeEEEEEECcccCCHHHHHHH
Confidence 456789998653 345678888876543 3432 1699999999999999999875
No 32
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.00063 Score=57.01 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=38.3
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..++|+++... .....||++|+. ++..+... ++|||||||||.|+.+||.|.
T Consensus 90 ~D~~ei~~~~~--~~vd~IReii~~-a~~~p~~~----~~KViIIDEad~Lt~~a~naL 141 (620)
T PRK14948 90 LDVIEIDAASN--TGVDNIRELIER-AQFAPVQA----RWKVYVIDECHMLSTAAFNAL 141 (620)
T ss_pred ccEEEEecccc--CCHHHHHHHHHH-HhhChhcC----CceEEEEECccccCHHHHHHH
Confidence 45678988642 234688999954 45555422 699999999999999999875
No 33
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.0005 Score=57.52 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=37.9
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|++|... ....-||++|. .+++.+... ++|||||||+|.|+..|+.|.
T Consensus 103 v~e~~a~s~--~gvd~IReIie-~~~~~P~~a----~~KVvIIDEad~Ls~~a~naL 152 (598)
T PRK09111 103 VLEMDAASH--TGVDDIREIIE-SVRYRPVSA----RYKVYIIDEVHMLSTAAFNAL 152 (598)
T ss_pred eEEeccccc--CCHHHHHHHHH-HHHhchhcC----CcEEEEEEChHhCCHHHHHHH
Confidence 468888654 33467898875 566666532 699999999999999998874
No 34
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.00063 Score=52.91 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=39.3
Q ss_pred eEeCCCCC-CcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 25 IEVNPNDA-GIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 25 lElnpSD~-g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+.|... ..+...-||++++.+..++..+ ++||+|||+||.||..|++|.
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g-----~~kV~iI~~ae~m~~~AaNaL 128 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHARLG-----GAKVVWLPDAALLTDAAANAL 128 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhccccC-----CceEEEEcchHhhCHHHHHHH
Confidence 34556432 2356688999999988876532 699999999999999999884
No 35
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.00073 Score=55.62 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=40.6
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.....+|++|... ....-||++|. .|++.|... .+||+||||+|.|+..||.|.
T Consensus 95 ~h~Dv~eidaas~--~~vd~Ir~iie-~a~~~P~~~----~~KVvIIDEa~~Ls~~a~naL 148 (507)
T PRK06645 95 NHPDIIEIDAASK--TSVDDIRRIIE-SAEYKPLQG----KHKIFIIDEVHMLSKGAFNAL 148 (507)
T ss_pred CCCcEEEeeccCC--CCHHHHHHHHH-HHHhccccC----CcEEEEEEChhhcCHHHHHHH
Confidence 3456789998653 34478898884 466666532 699999999999999999874
No 36
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.00089 Score=51.86 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=37.6
Q ss_pred EeCCCCCC-cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 26 EVNPNDAG-IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 26 ElnpSD~g-~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+.|...+ .+...-||++++++..++.-+ ++||+||++||.||.+||.|.
T Consensus 65 ~i~p~~~~~~I~idqiR~l~~~~~~~p~e~-----~~kv~ii~~ad~mt~~AaNaL 115 (290)
T PRK05917 65 EFSPQGKGRLHSIETPRAIKKQIWIHPYES-----PYKIYIIHEADRMTLDAISAF 115 (290)
T ss_pred EEecCCCCCcCcHHHHHHHHHHHhhCccCC-----CceEEEEechhhcCHHHHHHH
Confidence 45665432 245678899998887764321 699999999999999999984
No 37
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.00062 Score=58.41 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=37.8
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-.+|+|+++.. ...-||+++..+.... .. + +|||+||||||.|+..||.|.
T Consensus 88 DviEIDAAs~~--~VddIReli~~~~y~P-~~--g--k~KV~IIDEVh~LS~~A~NAL 138 (702)
T PRK14960 88 DLIEIDAASRT--KVEDTRELLDNVPYAP-TQ--G--RFKVYLIDEVHMLSTHSFNAL 138 (702)
T ss_pred ceEEecccccC--CHHHHHHHHHHHhhhh-hc--C--CcEEEEEechHhcCHHHHHHH
Confidence 45899998653 3457888887765432 21 1 699999999999999999874
No 38
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.00081 Score=51.93 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=38.8
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+.+.|.. ..+...-||++++.++.++.- + ++||+||++||.|+..|+.|.
T Consensus 74 ~~~i~p~~-~~I~idqIR~l~~~~~~~p~~---~--~~kV~II~~ad~m~~~AaNaL 124 (290)
T PRK07276 74 VTVIEPQG-QVIKTDTIRELVKNFSQSGYE---G--KQQVFIIKDADKMHVNAANSL 124 (290)
T ss_pred eeeecCCC-CcCCHHHHHHHHHHHhhCccc---C--CcEEEEeehhhhcCHHHHHHH
Confidence 34666743 234567899999999876432 2 699999999999999999874
No 39
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.0011 Score=54.05 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=37.5
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.-++|++++..++ ..-+|+ |++.++..|..+ .+||+||||||.||.+||.|.
T Consensus 88 ~d~~eidaas~~g--vd~ir~-I~~~~~~~P~~~----~~KVvIIDEad~Lt~~a~naL 139 (486)
T PRK14953 88 PDLIEIDAASNRG--IDDIRA-LRDAVSYTPIKG----KYKVYIIDEAHMLTKEAFNAL 139 (486)
T ss_pred CcEEEEeCccCCC--HHHHHH-HHHHHHhCcccC----CeeEEEEEChhhcCHHHHHHH
Confidence 4567888855432 345666 456667666542 699999999999999999874
No 40
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.0011 Score=50.05 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=36.4
Q ss_pred eEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 25 IEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 25 lElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++.|.+.+.+...-||+++..+.. .|..+ ++||+||++||.|+.+||.|.
T Consensus 63 ~~~~~~~~~~i~v~~ir~~~~~~~~-~p~~~----~~kv~iI~~ad~m~~~a~naL 113 (313)
T PRK05564 63 IEFKPINKKSIGVDDIRNIIEEVNK-KPYEG----DKKVIIIYNSEKMTEQAQNAF 113 (313)
T ss_pred EEeccccCCCCCHHHHHHHHHHHhc-CcccC----CceEEEEechhhcCHHHHHHH
Confidence 4677754444444568887766544 34332 699999999999999999874
No 41
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.0011 Score=51.93 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=27.9
Q ss_pred hhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 38 VVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 38 ~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..||++++.+..+... ..+|||||||||.|+.+||.|.
T Consensus 124 d~iR~l~~~l~~~~~~-----g~~rVviIDeAd~l~~~aanaL 161 (351)
T PRK09112 124 DEIRRVGHFLSQTSGD-----GNWRIVIIDPADDMNRNAANAI 161 (351)
T ss_pred HHHHHHHHHhhhcccc-----CCceEEEEEchhhcCHHHHHHH
Confidence 4566665555554322 2699999999999999999884
No 42
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.95 E-value=0.0011 Score=56.02 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=39.7
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+..++|+++++. ....-||++++.+... |..+ ++||+||||||.||.+||.|.
T Consensus 87 h~DiieIdaas~--igVd~IReIi~~~~~~-P~~~----~~KVIIIDEad~Lt~~A~NaL 139 (605)
T PRK05896 87 SVDIVELDAASN--NGVDEIRNIIDNINYL-PTTF----KYKVYIIDEAHMLSTSAWNAL 139 (605)
T ss_pred CCceEEeccccc--cCHHHHHHHHHHHHhc-hhhC----CcEEEEEechHhCCHHHHHHH
Confidence 467899998753 2346689988777654 4321 589999999999999999864
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.001 Score=54.10 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=38.0
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|+||++..+ ..-+|+ |++.++..+... .+|+|||||+|.|+.++|.+.
T Consensus 87 dv~el~aa~~~g--id~iR~-i~~~~~~~p~~~----~~kVvIIDE~h~Lt~~a~~~L 137 (472)
T PRK14962 87 DVIELDAASNRG--IDEIRK-IRDAVGYRPMEG----KYKVYIIDEVHMLTKEAFNAL 137 (472)
T ss_pred ccEEEeCcccCC--HHHHHH-HHHHHhhChhcC----CeEEEEEEChHHhHHHHHHHH
Confidence 468999975432 356775 667777766432 689999999999999998764
No 44
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.85 E-value=0.0016 Score=45.25 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=30.0
Q ss_pred ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 35 YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 35 ~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+..|+++++.+. +.+.. + ++|+|||||+|.|+.++|.+.
T Consensus 76 ~~~~~i~~i~~~~~-~~~~~--~--~~kviiide~~~l~~~~~~~L 116 (188)
T TIGR00678 76 IKVDQVRELVEFLS-RTPQE--S--GRRVVIIEDAERMNEAAANAL 116 (188)
T ss_pred CCHHHHHHHHHHHc-cCccc--C--CeEEEEEechhhhCHHHHHHH
Confidence 34567888775554 43432 2 699999999999999998763
No 45
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0017 Score=53.57 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=37.3
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..++|+|+++. +...-+|+++.. ++..+... .+|||||||+|.|+.+++.+.
T Consensus 89 ~d~~~i~~~~~--~~vd~ir~ii~~-~~~~p~~~----~~kVvIIDEa~~L~~~a~naL 140 (585)
T PRK14950 89 VDVIEMDAASH--TSVDDAREIIER-VQFRPALA----RYKVYIIDEVHMLSTAAFNAL 140 (585)
T ss_pred CeEEEEecccc--CCHHHHHHHHHH-HhhCcccC----CeEEEEEeChHhCCHHHHHHH
Confidence 45688998653 334667887744 45545432 699999999999999998764
No 46
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.0018 Score=55.68 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=37.2
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++|+++. +......||+++..+... |.. .++||+||||||.||.+||.|.
T Consensus 88 Dvieidaa--sn~~vd~IReLie~~~~~-P~~----g~~KV~IIDEa~~LT~~A~NAL 138 (725)
T PRK07133 88 DIIEMDAA--SNNGVDEIRELIENVKNL-PTQ----SKYKIYIIDEVHMLSKSAFNAL 138 (725)
T ss_pred cEEEEecc--ccCCHHHHHHHHHHHHhc-hhc----CCCEEEEEEChhhCCHHHHHHH
Confidence 35778763 234456789988776544 432 2699999999999999999875
No 47
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.0018 Score=54.81 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=36.9
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+|+++++.. ....+|++++.+... +.. + .+|||||||||.|+.++|.+.
T Consensus 88 pDv~eId~a~~~--~Id~iR~L~~~~~~~-p~~--g--~~kVIIIDEad~Lt~~a~naL 139 (624)
T PRK14959 88 VDVVEIDGASNR--GIDDAKRLKEAIGYA-PME--G--RYKVFIIDEAHMLTREAFNAL 139 (624)
T ss_pred CceEEEeccccc--CHHHHHHHHHHHHhh-hhc--C--CceEEEEEChHhCCHHHHHHH
Confidence 346899886542 346788865555433 432 1 699999999999999999774
No 48
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.0023 Score=49.88 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=35.8
Q ss_pred eeEeCCCCCC-cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAG-IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g-~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+.|...| .+...-||++++.+..+... .++||+||++||.|+..|+.|.
T Consensus 76 ~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~-----~~~kV~iI~~ae~m~~~AaNaL 128 (319)
T PRK06090 76 LHVIKPEKEGKSITVEQIRQCNRLAQESSQL-----NGYRLFVIEPADAMNESASNAL 128 (319)
T ss_pred EEEEecCcCCCcCCHHHHHHHHHHHhhCccc-----CCceEEEecchhhhCHHHHHHH
Confidence 3456675432 34456778776555554332 2699999999999999999884
No 49
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.0021 Score=50.63 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=32.7
Q ss_pred ceeEeCCCCCCc-----ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGI-----YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~-----~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
++||-++++.|. +...=||++++.+..+.. ...+|||||||||.|+.+||+|.
T Consensus 104 ~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~-----~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 104 LTLERSWNEKGKRLRTVITVDEVRELISFFGLTAA-----EGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred EEEecccccccccccccccHHHHHHHHHHhCcCcc-----cCCCEEEEEechHhcCHHHHHHH
Confidence 345555555442 222345555544433321 22699999999999999999874
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.0028 Score=49.15 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=33.7
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|++|++.. ...-+++++..+. ..+.. ..+||+||||||.|+.+||.|.
T Consensus 89 d~~~~~~~~~~--~v~~ir~i~~~~~-~~p~~----~~~kviIIDEa~~l~~~a~naL 139 (363)
T PRK14961 89 DLIEIDAASRT--KVEEMREILDNIY-YSPSK----SRFKVYLIDEVHMLSRHSFNAL 139 (363)
T ss_pred ceEEecccccC--CHHHHHHHHHHHh-cCccc----CCceEEEEEChhhcCHHHHHHH
Confidence 35777776521 1244666665543 33322 2689999999999999999763
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.0024 Score=54.88 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=37.0
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|+++++.. ....||++++. ++..+.. + .+||+||||+|.|+..|+.|.
T Consensus 90 vlEidaAs~~--gVd~IRelle~-a~~~P~~--g--k~KVIIIDEad~Ls~~A~NAL 139 (709)
T PRK08691 90 LLEIDAASNT--GIDNIREVLEN-AQYAPTA--G--KYKVYIIDEVHMLSKSAFNAM 139 (709)
T ss_pred eEEEeccccC--CHHHHHHHHHH-HHhhhhh--C--CcEEEEEECccccCHHHHHHH
Confidence 4899987643 33578888865 4554432 1 699999999999999998763
No 52
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.0026 Score=48.87 Aligned_cols=41 Identities=5% Similarity=-0.029 Sum_probs=31.9
Q ss_pred ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 35 YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 35 ~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....-||++++.+..++.. + ++||+||||||.|+.+||.|.
T Consensus 90 i~id~ir~l~~~~~~~~~~---~--~~kvviI~~a~~~~~~a~NaL 130 (329)
T PRK08058 90 IKKDQIRYLKEEFSKSGVE---S--NKKVYIIEHADKMTASAANSL 130 (329)
T ss_pred CCHHHHHHHHHHHhhCCcc---c--CceEEEeehHhhhCHHHHHHH
Confidence 3446788888877766432 2 689999999999999999874
No 53
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.58 E-value=0.004 Score=46.61 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=37.2
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..++++||++. .....+++++... ++.+... ++|+|||||||.|+.+++.+.
T Consensus 86 ~~~~~~~~~~~--~~~~~~~~l~~~~-~~~p~~~----~~~vviidea~~l~~~~~~~L 137 (355)
T TIGR02397 86 LDVIEIDAASN--NGVDDIREILDNV-KYAPSSG----KYKVYIIDEVHMLSKSAFNAL 137 (355)
T ss_pred CCEEEeecccc--CCHHHHHHHHHHH-hcCcccC----CceEEEEeChhhcCHHHHHHH
Confidence 34689999753 2345677777664 4444432 689999999999999988764
No 54
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.0036 Score=52.11 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=36.5
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+|+++.... +..-++++++.+.. .+.. + .+||+||||||.|+.+||.|.
T Consensus 88 ~dlieidaas~~--gvd~ir~ii~~~~~-~p~~--g--~~kViIIDEa~~ls~~a~naL 139 (546)
T PRK14957 88 IDLIEIDAASRT--GVEETKEILDNIQY-MPSQ--G--RYKVYLIDEVHMLSKQSFNAL 139 (546)
T ss_pred CceEEeeccccc--CHHHHHHHHHHHHh-hhhc--C--CcEEEEEechhhccHHHHHHH
Confidence 356788874432 23567888876643 3432 2 699999999999999999864
No 55
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.0028 Score=49.84 Aligned_cols=40 Identities=8% Similarity=-0.123 Sum_probs=29.3
Q ss_pred cchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 36 DRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 36 Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...=||++++.+..+ +.. .++||+||++||.|+.+|+.|.
T Consensus 113 ~idqiR~l~~~~~~~-~~~----~~~kV~iI~~ae~m~~~AaNaL 152 (342)
T PRK06964 113 KIEQVRALLDFCGVG-THR----GGARVVVLYPAEALNVAAANAL 152 (342)
T ss_pred CHHHHHHHHHHhccC-Ccc----CCceEEEEechhhcCHHHHHHH
Confidence 345677777655444 322 1699999999999999999874
No 56
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.0062 Score=47.83 Aligned_cols=51 Identities=10% Similarity=-0.019 Sum_probs=34.9
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|+++++.. ...-|++++..+... |..+ ++|+|||||||.|+..+|.+.
T Consensus 97 n~~~~~~~~~~--~id~Ir~l~~~~~~~-p~~~----~~kvvIIdea~~l~~~~~~~L 147 (397)
T PRK14955 97 NISEFDAASNN--SVDDIRLLRENVRYG-PQKG----RYRVYIIDEVHMLSIAAFNAF 147 (397)
T ss_pred CeEeecccccC--CHHHHHHHHHHHhhc-hhcC----CeEEEEEeChhhCCHHHHHHH
Confidence 45677775542 236677766555433 4322 699999999999999888753
No 57
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.0036 Score=48.30 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 39 VVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 39 VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-||++ .++++.+|..+ ++||||||+||.|+.+|+.|.
T Consensus 108 ~ir~i-~~~l~~~p~~~----~~kVvII~~ae~m~~~aaNaL 144 (314)
T PRK07399 108 QIREI-KRFLSRPPLEA----PRKVVVIEDAETMNEAAANAL 144 (314)
T ss_pred HHHHH-HHHHccCcccC----CceEEEEEchhhcCHHHHHHH
Confidence 56664 45566666542 699999999999999999874
No 58
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.0065 Score=48.98 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=35.1
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+..++|+++++.. ...-++++...+..... . .++|||||||||.|+.++|.+.
T Consensus 89 ~~d~~~i~g~~~~--gid~ir~i~~~l~~~~~-~----~~~kvvIIdead~lt~~~~n~L 141 (451)
T PRK06305 89 SLDVLEIDGASHR--GIEDIRQINETVLFTPS-K----SRYKIYIIDEVHMLTKEAFNSL 141 (451)
T ss_pred CCceEEeeccccC--CHHHHHHHHHHHHhhhh-c----CCCEEEEEecHHhhCHHHHHHH
Confidence 3457899875432 22556665554443321 1 2699999999999999998763
No 59
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.0057 Score=48.79 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=28.6
Q ss_pred hhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 38 VVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 38 ~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.=||++++.+... +.. .++||+||||||.|+..||.|.
T Consensus 100 ~~iR~l~~~~~~~-p~~----~~~kViiIDead~m~~~aanaL 137 (394)
T PRK07940 100 DEVRELVTIAARR-PST----GRWRIVVIEDADRLTERAANAL 137 (394)
T ss_pred HHHHHHHHHHHhC-ccc----CCcEEEEEechhhcCHHHHHHH
Confidence 4478877666554 321 2699999999999999999764
No 60
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.01 E-value=0.0049 Score=51.28 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=35.1
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-.|||.+-- +.+..=||+++.+. +..|.. ..|||.||||+|.||..|+.|.
T Consensus 89 DviEiDaAS--n~gVddiR~i~e~v-~y~P~~----~ryKVyiIDEvHMLS~~afNAL 139 (515)
T COG2812 89 DVIEIDAAS--NTGVDDIREIIEKV-NYAPSE----GRYKVYIIDEVHMLSKQAFNAL 139 (515)
T ss_pred cchhhhhhh--ccChHHHHHHHHHh-ccCCcc----ccceEEEEecHHhhhHHHHHHH
Confidence 345664422 12336678877765 444442 2699999999999999999985
No 61
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.008 Score=46.59 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=33.5
Q ss_pred cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 34 IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 34 ~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+...-||++++.+..++..+ ++||+||++||.|+.+|+.|.
T Consensus 68 ~I~IdqIReL~~~l~~~p~~g-----~~KViII~~ae~mt~~AANAL 109 (263)
T PRK06581 68 NISIEQIRKLQDFLSKTSAIS-----GYKVAIIYSAELMNLNAANSC 109 (263)
T ss_pred cccHHHHHHHHHHHhhCcccC-----CcEEEEEechHHhCHHHHHHH
Confidence 456678899888777664432 699999999999999999874
No 62
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.015 Score=44.44 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=34.6
Q ss_pred eEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 25 IEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 25 lElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+|+++.+ ..+...++++++++... |.. + ++|+|||||+|.|+..+|.+.
T Consensus 80 ~~l~~~~--~~~~~~i~~l~~~~~~~-p~~--~--~~kiviIDE~~~l~~~~~~~l 128 (367)
T PRK14970 80 FELDAAS--NNSVDDIRNLIDQVRIP-PQT--G--KYKIYIIDEVHMLSSAAFNAF 128 (367)
T ss_pred EEecccc--CCCHHHHHHHHHHHhhc-ccc--C--CcEEEEEeChhhcCHHHHHHH
Confidence 5666543 24457788888876443 332 1 589999999999999888763
No 63
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.015 Score=49.13 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=35.3
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+.|+++... ....-||+++.++... |..+ ++|||||||||.|+.+||.|.
T Consensus 97 n~~~~d~~s~--~~vd~Ir~l~e~~~~~-P~~~----~~KVvIIdEad~Lt~~a~naL 147 (620)
T PRK14954 97 NISEFDAASN--NSVDDIRQLRENVRYG-PQKG----RYRVYIIDEVHMLSTAAFNAF 147 (620)
T ss_pred CeEEeccccc--CCHHHHHHHHHHHHhh-hhcC----CCEEEEEeChhhcCHHHHHHH
Confidence 4467766332 2236788877777544 3322 699999999999999998763
No 64
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.02 Score=44.23 Aligned_cols=39 Identities=10% Similarity=-0.123 Sum_probs=26.7
Q ss_pred HHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 42 ELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 42 ~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+.|.++.++-+..+..+.++|||||++||.|+..||.|.
T Consensus 72 d~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaL 110 (299)
T PRK07132 72 SEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNAL 110 (299)
T ss_pred HHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHH
Confidence 344444444444332223799999999999999999873
No 65
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.38 E-value=0.033 Score=43.25 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=37.2
Q ss_pred cceeEeCCC----CCC----cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPN----DAG----IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpS----D~g----~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....+++|. +.| .+...-||++++.+..+ +.. .++||+|++++|.|+..||.+.
T Consensus 72 pD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~-p~~----~~~kV~iiEp~~~Ld~~a~naL 133 (325)
T PRK08699 72 PDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLT-SVR----GGLRVILIHPAESMNLQAANSL 133 (325)
T ss_pred CCEEEEecccccccccccCCCcCHHHHHHHHHHHhhC-ccc----CCceEEEEechhhCCHHHHHHH
Confidence 445788883 122 13456789876555443 432 1699999999999999999874
No 66
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.35 E-value=0.027 Score=46.91 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=32.6
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|+++... ....-||+++. .++..|... ++||+||||+|.|+..||.|.
T Consensus 90 v~~idgas~--~~vddIr~l~e-~~~~~p~~~----~~KVvIIDEa~~Ls~~a~naL 139 (563)
T PRK06647 90 VIEIDGASN--TSVQDVRQIKE-EIMFPPASS----RYRVYIIDEVHMLSNSAFNAL 139 (563)
T ss_pred eEEecCccc--CCHHHHHHHHH-HHHhchhcC----CCEEEEEEChhhcCHHHHHHH
Confidence 466765321 12245565443 345555432 699999999999999999875
No 67
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.019 Score=44.11 Aligned_cols=49 Identities=4% Similarity=-0.046 Sum_probs=35.3
Q ss_pred eCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 27 VNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 27 lnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+.|.. ..+.+.-||++++.+.....- ..++||+||++||.|+..|..|.
T Consensus 60 i~p~~-~~I~id~ir~l~~~l~~~s~e----~~~~KV~II~~ae~m~~~AaNaL 108 (261)
T PRK05818 60 IFDQK-NPIKKEDALSIINKLNRPSVE----SNGKKIYIIYGIEKLNKQSANSL 108 (261)
T ss_pred ecCCc-ccCCHHHHHHHHHHHccCchh----cCCCEEEEeccHhhhCHHHHHHH
Confidence 44542 234567889988888754311 12699999999999999999874
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.96 E-value=0.033 Score=43.83 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=44.1
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++|||.-...++ ....+++|+++.|. .-++++++........ ...+++||||+|.|+..+|.+.
T Consensus 45 pGtGKTtLA~~ia~~~~~~~~~l~a~~~~~---~~ir~ii~~~~~~~~~-----g~~~vL~IDEi~~l~~~~q~~L 112 (413)
T PRK13342 45 PGTGKTTLARIIAGATDAPFEALSAVTSGV---KDLREVIEEARQRRSA-----GRRTILFIDEIHRFNKAQQDAL 112 (413)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEecccccH---HHHHHHHHHHHHhhhc-----CCceEEEEechhhhCHHHHHHH
Confidence 4667764443332 24568899998764 4567777776543321 1579999999999999998763
No 69
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.51 E-value=0.011 Score=50.59 Aligned_cols=66 Identities=9% Similarity=-0.062 Sum_probs=43.7
Q ss_pred CCCCCeEEEEEc---cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 8 TPSKKKIDIMTT---ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~---~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+++|||.-...+ ....++++|+++.|.. -+++.++++.+..... ...+++||||+|.|+..+|.|.
T Consensus 61 pGtGKTTLA~aIA~~~~~~f~~lna~~~~i~---dir~~i~~a~~~l~~~----~~~~IL~IDEIh~Ln~~qQdaL 129 (725)
T PRK13341 61 PGVGKTTLARIIANHTRAHFSSLNAVLAGVK---DLRAEVDRAKERLERH----GKRTILFIDEVHRFNKAQQDAL 129 (725)
T ss_pred CCCCHHHHHHHHHHHhcCcceeehhhhhhhH---HHHHHHHHHHHHhhhc----CCceEEEEeChhhCCHHHHHHH
Confidence 567777443333 2345689999987653 3567777654432221 1478999999999999999763
No 70
>KOG1969|consensus
Probab=94.25 E-value=0.066 Score=47.15 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=38.8
Q ss_pred cccc-eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCC
Q psy2304 20 ASNY-HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLV 72 (85)
Q Consensus 20 ~Sn~-hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~L 72 (85)
.+.| ++||||||++.- .+|.+.|-..-++..+..... .=+.+|+||.|-=
T Consensus 349 qaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~ads-rP~CLViDEIDGa 399 (877)
T KOG1969|consen 349 QAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADS-RPVCLVIDEIDGA 399 (877)
T ss_pred hcCceEEEecccccccH--HHHHHHHHHHHhhccccccCC-CcceEEEecccCC
Confidence 3444 699999998664 899999999999988754322 3578999999953
No 71
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.93 E-value=0.12 Score=35.73 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
...+||+||||+|-..+....|..|
T Consensus 145 ~~~ivI~DEAHNL~~~~~~~~s~~i 169 (174)
T PF06733_consen 145 KDNIVIFDEAHNLEDAARDSFSFSI 169 (174)
T ss_dssp CCEEEEETTGGGCGGGCHCCC-EEE
T ss_pred cCcEEEEecccchHHHHHHHhccee
Confidence 5689999999999988887776543
No 72
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.45 E-value=0.19 Score=37.86 Aligned_cols=67 Identities=13% Similarity=-0.023 Sum_probs=39.9
Q ss_pred CCCCCeEEEEEccc------------cceeEeCCCCCCcccchhhHHHHHHHhh-cCcCCC----------------CCC
Q psy2304 8 TPSKKKIDIMTTAS------------NYHIEVNPNDAGIYDRVVVMELIKNVAQ-TNQLDP----------------NGQ 58 (85)
Q Consensus 8 t~s~k~~eI~~~~S------------n~hlElnpSD~g~~Dr~VVq~~IK~~A~-t~~~~~----------------~~~ 58 (85)
+++|||.-+..+.. -.++++|+..... ...+.+.+.+.+.. ...... ...
T Consensus 49 ~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 127 (365)
T TIGR02928 49 TGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT-LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER 127 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC-HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 46788765554432 2578999986532 24677777777753 111100 011
Q ss_pred CceeEEEEcCCCCCCHH
Q psy2304 59 RDFKGKFVARGPLVGNP 75 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~ 75 (85)
.+..||||||+|.|...
T Consensus 128 ~~~~vlvIDE~d~L~~~ 144 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGD 144 (365)
T ss_pred CCeEEEEECchhhhccC
Confidence 24679999999999643
No 73
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=86.16 E-value=0.43 Score=36.22 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
+..++|+||||+|-..|..+.|..+
T Consensus 236 ~~~~lIiDEAHnL~d~a~~~~s~~l 260 (289)
T smart00488 236 KDSIVIFDEAHNLDNVCISALSSEL 260 (289)
T ss_pred cccEEEEeCccChHHHHHHHhcCee
Confidence 4689999999999999988877654
No 74
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=86.16 E-value=0.43 Score=36.22 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
+..++|+||||+|-..|..+.|..+
T Consensus 236 ~~~~lIiDEAHnL~d~a~~~~s~~l 260 (289)
T smart00489 236 KDSIVIFDEAHNLDNVCISALSSEL 260 (289)
T ss_pred cccEEEEeCccChHHHHHHHhcCee
Confidence 4689999999999999988877654
No 75
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=85.67 E-value=0.25 Score=30.13 Aligned_cols=19 Identities=5% Similarity=-0.064 Sum_probs=15.5
Q ss_pred CceeEEEEcCCCCCCHHHH
Q psy2304 59 RDFKGKFVARGPLVGNPWH 77 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ 77 (85)
..++++|+||+|.+.+...
T Consensus 102 ~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 102 KKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred hcCCEEEEeCHHHHhhcch
Confidence 3689999999999876643
No 76
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=0.31 Score=38.63 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=46.6
Q ss_pred eCCCCCeEEEEEc-------cccc-eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCC-------------CCCceeEEE
Q psy2304 7 NTPSKKKIDIMTT-------ASNY-HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPN-------------GQRDFKGKF 65 (85)
Q Consensus 7 ~t~s~k~~eI~~~-------~Sn~-hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~-------------~~~~fKvvv 65 (85)
.|++|||..+..+ +.+. ++.+||-..+.. ..|...+...+.+.+..+.. .....=+||
T Consensus 50 ~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~-~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~Ivv 128 (366)
T COG1474 50 PTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP-YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVI 128 (366)
T ss_pred CCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH-HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEE
Confidence 3788998766555 3445 899999887553 35777777777533322211 233567999
Q ss_pred EcCCCCCCHHHH
Q psy2304 66 VARGPLVGNPWH 77 (85)
Q Consensus 66 LdEAD~LT~~AQ 77 (85)
|||+|.|-...|
T Consensus 129 LDEid~L~~~~~ 140 (366)
T COG1474 129 LDEVDALVDKDG 140 (366)
T ss_pred Ecchhhhccccc
Confidence 999999987654
No 77
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=81.18 E-value=0.88 Score=38.68 Aligned_cols=24 Identities=4% Similarity=-0.130 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCCHHHHhccccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSLQ 83 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~~ 83 (85)
.+.++|+||||+|-..|..+.+.+
T Consensus 246 ~~~~lViDEAH~L~d~A~~~~~~~ 269 (697)
T PRK11747 246 ENLLYVLDEGHHLPDVARDHFAAS 269 (697)
T ss_pred CCCEEEEECccchHHHHHHHhhhh
Confidence 489999999999999888765544
No 78
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=81.16 E-value=0.38 Score=31.18 Aligned_cols=15 Identities=0% Similarity=-0.077 Sum_probs=13.5
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
+++++||||||.+.+
T Consensus 129 ~~~~iIiDE~h~~~~ 143 (201)
T smart00487 129 NVDLVILDEAHRLLD 143 (201)
T ss_pred HCCEEEEECHHHHhc
Confidence 578999999999986
No 79
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=80.87 E-value=1.9 Score=35.56 Aligned_cols=21 Identities=5% Similarity=-0.290 Sum_probs=18.4
Q ss_pred ceeEEEEcCCCCCCHHHHhcc
Q psy2304 60 DFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+++|||+|.|+.++|.+.
T Consensus 175 ~gG~L~IdEI~~L~~~~q~~L 195 (531)
T TIGR02902 175 HGGVLFIDEIGELHPVQMNKL 195 (531)
T ss_pred CCcEEEEechhhCCHHHHHHH
Confidence 357999999999999999864
No 80
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=80.49 E-value=0.76 Score=39.67 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCCHHHHhccccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSLQ 83 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~~ 83 (85)
+.++++|+||||+|-..|....+.+
T Consensus 439 p~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 439 PSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred CCCCEEEEECcchHHHHHHHHhcce
Confidence 4679999999999999888776544
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.34 E-value=3.3 Score=24.86 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=22.7
Q ss_pred hHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 40 VMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 40 Vq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
....+.++|+... ..++++||++.+....+..
T Consensus 66 ~~~~~~~~~~~~~--------~~viiiDei~~~~~~~~~~ 97 (148)
T smart00382 66 RLRLALALARKLK--------PDVLILDEITSLLDAEQEA 97 (148)
T ss_pred HHHHHHHHHHhcC--------CCEEEEECCcccCCHHHHH
Confidence 3345555555422 6899999999999887765
No 82
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=80.17 E-value=3 Score=31.41 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=27.0
Q ss_pred ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 35 YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 35 ~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....-+|+++++..-..+ .-|+ |+++||.||..|+.|.
T Consensus 37 i~Vd~iReii~~~~~~~~-------~~k~-iI~~a~~l~~~A~NaL 74 (206)
T PRK08485 37 FKIEDAKEVIAEAYIAES-------EEKI-IVIAAPSYGIEAQNAL 74 (206)
T ss_pred CCHHHHHHHHHHHhhCCC-------CcEE-EEEchHhhCHHHHHHH
Confidence 344778998888655421 2344 5779999999999984
No 83
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=80.16 E-value=0.88 Score=38.88 Aligned_cols=26 Identities=15% Similarity=0.000 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
|.+-.+|+||||+|...|..+.+.++
T Consensus 205 P~~~~lIiDEAH~L~d~A~~~~g~~l 230 (636)
T TIGR03117 205 PQPDILIVDEAHLFEQNISRVYSNAL 230 (636)
T ss_pred CCCCEEEEeCCcchHHHHHHHhccEE
Confidence 46899999999999999998876553
No 84
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=80.16 E-value=0.89 Score=39.84 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCCHHHHhccccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSLQ 83 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~~ 83 (85)
|++.++|+||||+|...|..+.+.+
T Consensus 454 p~~~~lViDEAH~l~d~A~~~~~~~ 478 (928)
T PRK08074 454 PSYEHIIIDEAHHFEEAASRHLGEQ 478 (928)
T ss_pred CCCCeEEEECCchHHHHHHHHhcce
Confidence 4699999999999999997665543
No 85
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.84 E-value=0.46 Score=34.90 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=11.4
Q ss_pred eEEEEcCCCCCCH
Q psy2304 62 KGKFVARGPLVGN 74 (85)
Q Consensus 62 KvvvLdEAD~LT~ 74 (85)
.|++|||||.|..
T Consensus 107 ~VL~IDE~~~L~~ 119 (261)
T TIGR02881 107 GVLFIDEAYSLAR 119 (261)
T ss_pred CEEEEechhhhcc
Confidence 5999999999974
No 86
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=79.78 E-value=0.91 Score=29.83 Aligned_cols=17 Identities=6% Similarity=-0.041 Sum_probs=15.1
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.+.+||+||||.+....
T Consensus 146 ~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp SESEEEEETGGCTHHHH
T ss_pred cCCEEEEehhhhcCCHH
Confidence 58899999999998776
No 87
>CHL00095 clpC Clp protease ATP binding subunit
Probab=77.31 E-value=1.5 Score=37.82 Aligned_cols=22 Identities=0% Similarity=-0.156 Sum_probs=19.8
Q ss_pred CceeEEEEcCCCCCCHHHHhcc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.||+||+|||+|++.++.|.+.
T Consensus 610 ~p~~VvllDeieka~~~v~~~L 631 (821)
T CHL00095 610 KPYTVVLFDEIEKAHPDIFNLL 631 (821)
T ss_pred CCCeEEEECChhhCCHHHHHHH
Confidence 3799999999999999999864
No 88
>KOG1968|consensus
Probab=75.14 E-value=3.1 Score=36.97 Aligned_cols=65 Identities=11% Similarity=-0.000 Sum_probs=45.2
Q ss_pred CCCCeEEEEEcc---ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCC---------CCceeEEEEcCCCCCCHH
Q psy2304 9 PSKKKIDIMTTA---SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNG---------QRDFKGKFVARGPLVGNP 75 (85)
Q Consensus 9 ~s~k~~eI~~~~---Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~---------~~~fKvvvLdEAD~LT~~ 75 (85)
+-|||....+++ .--.+|.||||.+.. ..+.+.+.++-+++.+.... ....-||++||.|-|..+
T Consensus 367 GigKT~~~h~~~k~~g~~v~E~Nas~~RSk--~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~ 443 (871)
T KOG1968|consen 367 GIGKTTAAHKAAKELGFKVVEKNASDVRSK--KELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE 443 (871)
T ss_pred CCCchhhHhhhhhhcccceeecCccccccc--cHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch
Confidence 445554444442 234799999999754 78888888888888774321 223559999999999873
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=72.66 E-value=2.3 Score=36.21 Aligned_cols=21 Identities=0% Similarity=-0.341 Sum_probs=19.0
Q ss_pred ceeEEEEcCCCCCCHHHHhcc
Q psy2304 60 DFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
|+.||+|||+|++.++.|.+.
T Consensus 553 p~~VvllDEieka~~~~~~~L 573 (731)
T TIGR02639 553 PHCVLLLDEIEKAHPDIYNIL 573 (731)
T ss_pred CCeEEEEechhhcCHHHHHHH
Confidence 799999999999999998753
No 90
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.51 E-value=1.8 Score=36.56 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCCHHHHhcccccc
Q psy2304 62 KGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
-+||+||||+|-.-+-.+.|..+
T Consensus 222 ~ivI~DEAHNL~d~~~~~~S~~l 244 (705)
T TIGR00604 222 SIVIFDEAHNLDNVCISSLSSNL 244 (705)
T ss_pred CEEEEECccchHHHHHHHHhccc
Confidence 68999999999888877777554
No 91
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=71.59 E-value=1.5 Score=33.47 Aligned_cols=65 Identities=5% Similarity=-0.096 Sum_probs=37.8
Q ss_pred CCCCCeEEEEEccc--------cceeEeCCCCCCcccchhhHHHHHHHhhcC-cC-CC-------------CCCCceeEE
Q psy2304 8 TPSKKKIDIMTTAS--------NYHIEVNPNDAGIYDRVVVMELIKNVAQTN-QL-DP-------------NGQRDFKGK 64 (85)
Q Consensus 8 t~s~k~~eI~~~~S--------n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~-~~-~~-------------~~~~~fKvv 64 (85)
+++|||.-+..+.. -.++.+|+..... -..+++++.+++.... +. +. ......-||
T Consensus 64 ~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi 142 (394)
T PRK00411 64 PGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT-RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIV 142 (394)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC-HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 56788766655532 2378888876532 2356666666654311 10 00 011245799
Q ss_pred EEcCCCCCC
Q psy2304 65 FVARGPLVG 73 (85)
Q Consensus 65 vLdEAD~LT 73 (85)
||||+|.|.
T Consensus 143 viDE~d~l~ 151 (394)
T PRK00411 143 ALDDINYLF 151 (394)
T ss_pred EECCHhHhh
Confidence 999999986
No 92
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=71.06 E-value=2.2 Score=35.11 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCCHHHHhcccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSL 82 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~ 82 (85)
|..+++|+||||+|-.-|..+.+.
T Consensus 219 p~~~v~v~DEAH~l~d~a~~~~s~ 242 (654)
T COG1199 219 PENDVVVFDEAHNLPDIARSALSI 242 (654)
T ss_pred CcccEEEEeccccchHHHHHHHHH
Confidence 458999999999999988877663
No 93
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=69.58 E-value=0.98 Score=33.60 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=45.0
Q ss_pred CCCCCeEEEEEccc---cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhccc
Q psy2304 8 TPSKKKIDIMTTAS---NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRASS 81 (85)
Q Consensus 8 t~s~k~~eI~~~~S---n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~~ 81 (85)
+.+|||-.+..++. -+.+-+|+++. .|...+..++|-+|++.. -..+||.++|+.+.-.+.+
T Consensus 41 agtGKtetik~La~~lG~~~~vfnc~~~--~~~~~l~ril~G~~~~Ga----------W~cfdefnrl~~~vLS~i~ 105 (231)
T PF12774_consen 41 AGTGKTETIKDLARALGRFVVVFNCSEQ--MDYQSLSRILKGLAQSGA----------WLCFDEFNRLSEEVLSVIS 105 (231)
T ss_dssp TTSSHHHHHHHHHHCTT--EEEEETTSS--S-HHHHHHHHHHHHHHT-----------EEEEETCCCSSHHHHHHHH
T ss_pred CCCCchhHHHHHHHHhCCeEEEeccccc--ccHHHHHHHHHHHhhcCc----------hhhhhhhhhhhHHHHHHHH
Confidence 45677666555544 67889999985 577999999999999843 4789999999987655443
No 94
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=68.77 E-value=3.4 Score=32.23 Aligned_cols=15 Identities=0% Similarity=-0.099 Sum_probs=13.2
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++++||||||.|..
T Consensus 157 ~v~~lViDEad~l~~ 171 (423)
T PRK04837 157 AIQVVVLDEADRMFD 171 (423)
T ss_pred cccEEEEecHHHHhh
Confidence 689999999998864
No 95
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=68.76 E-value=3.5 Score=25.23 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=15.2
Q ss_pred ceeEEEEcCCCCCCHHHHh
Q psy2304 60 DFKGKFVARGPLVGNPWHR 78 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~ 78 (85)
...++||||++.|..+.+.
T Consensus 84 ~~~~lilDe~~~~~~~~~~ 102 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQN 102 (151)
T ss_pred CCeEEEEeChhhhhHHHHH
Confidence 4689999999999666553
No 96
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=68.01 E-value=4.2 Score=29.15 Aligned_cols=19 Identities=0% Similarity=0.011 Sum_probs=13.1
Q ss_pred CceeEEEEcCCCCCCHHHH
Q psy2304 59 RDFKGKFVARGPLVGNPWH 77 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ 77 (85)
+.|-+||+||||.+.+.+=
T Consensus 94 ~~yd~II~DEcH~~Dp~sI 112 (148)
T PF07652_consen 94 KNYDVIIMDECHFTDPTSI 112 (148)
T ss_dssp TS-SEEEECTTT--SHHHH
T ss_pred cCccEEEEeccccCCHHHH
Confidence 4799999999999877653
No 97
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=67.96 E-value=1.9 Score=27.29 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=21.4
Q ss_pred chhhHHHHHHHhhcCcCCCC------------CCCceeEEEEcCCCCC-C
Q psy2304 37 RVVVMELIKNVAQTNQLDPN------------GQRDFKGKFVARGPLV-G 73 (85)
Q Consensus 37 r~VVq~~IK~~A~t~~~~~~------------~~~~fKvvvLdEAD~L-T 73 (85)
+.+.+++...+......... ......+|||||||.| +
T Consensus 52 ~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~ 101 (131)
T PF13401_consen 52 RDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFS 101 (131)
T ss_dssp HHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHT
T ss_pred HHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCC
Confidence 45667776666554333000 0112369999999998 5
No 98
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=67.56 E-value=3.4 Score=32.77 Aligned_cols=15 Identities=0% Similarity=-0.117 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++++||||||.|..
T Consensus 149 ~v~~lViDEah~ll~ 163 (456)
T PRK10590 149 QVEILVLDEADRMLD 163 (456)
T ss_pred cceEEEeecHHHHhc
Confidence 689999999998864
No 99
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=67.20 E-value=3.2 Score=29.61 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=12.6
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
.|.+||+||||.+.
T Consensus 134 ~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 134 KWDRVIVDEAHRLK 147 (299)
T ss_dssp EEEEEEETTGGGGT
T ss_pred cceeEEEecccccc
Confidence 59999999999993
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=66.15 E-value=2.8 Score=37.82 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=14.2
Q ss_pred CCceeEEEEcCCCCCCH
Q psy2304 58 QRDFKGKFVARGPLVGN 74 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT~ 74 (85)
+++|+.+||||||+|--
T Consensus 213 qr~~~~~IIDEADsmLi 229 (970)
T PRK12899 213 GRGFYFAIIDEVDSILI 229 (970)
T ss_pred cccccEEEEechhhhhh
Confidence 46789999999998754
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=66.04 E-value=0.74 Score=30.21 Aligned_cols=17 Identities=0% Similarity=-0.066 Sum_probs=14.6
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.+.+||+||+|.|....
T Consensus 119 ~~~~iViDE~h~l~~~~ 135 (169)
T PF00270_consen 119 RLSLIVIDEAHHLSDET 135 (169)
T ss_dssp TESEEEEETHHHHHHTT
T ss_pred cceeeccCccccccccc
Confidence 48999999999998853
No 102
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=65.55 E-value=4.3 Score=30.50 Aligned_cols=14 Identities=0% Similarity=-0.254 Sum_probs=12.3
Q ss_pred eEEEEcCCCCCCHH
Q psy2304 62 KGKFVARGPLVGNP 75 (85)
Q Consensus 62 KvvvLdEAD~LT~~ 75 (85)
++|||||||.|...
T Consensus 126 ~~iViDE~h~~~~~ 139 (358)
T TIGR01587 126 SLLIFDEVHFYDEY 139 (358)
T ss_pred CEEEEeCCCCCCHH
Confidence 68999999999864
No 103
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.03 E-value=4.1 Score=32.55 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.++.
T Consensus 127 ~i~~iViDEaH~i~~ 141 (470)
T TIGR00614 127 GITLIAVDEAHCISQ 141 (470)
T ss_pred CcCEEEEeCCcccCc
Confidence 689999999999874
No 104
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=64.74 E-value=5.7 Score=25.12 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=15.1
Q ss_pred CCceeEEEEcCC-CCCCHHHH
Q psy2304 58 QRDFKGKFVARG-PLVGNPWH 77 (85)
Q Consensus 58 ~~~fKvvvLdEA-D~LT~~AQ 77 (85)
.+.+++|+|||| .+|.++-.
T Consensus 61 ~~~~~~l~lDEaF~~lD~~~~ 81 (90)
T PF13558_consen 61 GDSPRLLFLDEAFSKLDEENI 81 (90)
T ss_dssp -TTBSEEEEESTTTTCGHHHH
T ss_pred CCCcCEEEEeCCCCcCCHHHH
Confidence 347999999999 67776543
No 105
>PTZ00424 helicase 45; Provisional
Probab=64.72 E-value=2.2 Score=32.46 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 170 ~i~lvViDEah~~~~ 184 (401)
T PTZ00424 170 DLKLFILDEADEMLS 184 (401)
T ss_pred cccEEEEecHHHHHh
Confidence 689999999998754
No 106
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=64.22 E-value=3.5 Score=35.93 Aligned_cols=22 Identities=9% Similarity=-0.154 Sum_probs=18.2
Q ss_pred CceeEEEEcCCCCCCHHHHhcc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
|.+..+|+||||+|-..|++.+
T Consensus 435 p~~~~lIiDEAH~l~~~~~~~~ 456 (820)
T PRK07246 435 ARNKVLVFDEAQKLMLQLEQLS 456 (820)
T ss_pred CCCCEEEEECcchhHHHHHHHh
Confidence 5799999999999997766544
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=64.02 E-value=3.8 Score=29.00 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=17.5
Q ss_pred ceeEEEEcCCCCCCHHHHhcc
Q psy2304 60 DFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+++||||+|.|+...|.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L 110 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIAL 110 (227)
T ss_pred cCCEEEEeChhhcCchHHHHH
Confidence 468999999999998887653
No 108
>PHA02653 RNA helicase NPH-II; Provisional
Probab=63.82 E-value=3.4 Score=35.52 Aligned_cols=17 Identities=6% Similarity=-0.093 Sum_probs=14.3
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.+++|||||||.++...
T Consensus 291 ~v~~VVIDEaHEr~~~~ 307 (675)
T PHA02653 291 DYGTVIIDEVHEHDQIG 307 (675)
T ss_pred cCCEEEccccccCccch
Confidence 48999999999987654
No 109
>KOG0335|consensus
Probab=62.50 E-value=2.9 Score=35.04 Aligned_cols=15 Identities=7% Similarity=-0.079 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
..|.+||||||.|-.
T Consensus 226 ~~k~~vLDEADrMlD 240 (482)
T KOG0335|consen 226 NCKFLVLDEADRMLD 240 (482)
T ss_pred hCcEEEecchHHhhh
Confidence 478999999999865
No 110
>PHA02558 uvsW UvsW helicase; Provisional
Probab=62.00 E-value=4.1 Score=32.99 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=14.0
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|.+||+||||.+...
T Consensus 222 ~~~~iIvDEaH~~~~~ 237 (501)
T PHA02558 222 QFGMVIVDECHLFTGK 237 (501)
T ss_pred ccCEEEEEchhcccch
Confidence 6899999999998754
No 111
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=61.23 E-value=2.9 Score=32.54 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=13.1
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
+.+++|||||||.|..
T Consensus 146 ~~v~~lViDEah~~l~ 161 (434)
T PRK11192 146 RAVETLILDEADRMLD 161 (434)
T ss_pred ccCCEEEEECHHHHhC
Confidence 3578999999998754
No 112
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=59.58 E-value=2.9 Score=32.97 Aligned_cols=14 Identities=0% Similarity=-0.090 Sum_probs=12.3
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
.++++||||||.|.
T Consensus 147 ~l~~lViDEad~~l 160 (460)
T PRK11776 147 ALNTLVLDEADRML 160 (460)
T ss_pred HCCEEEEECHHHHh
Confidence 58999999999875
No 113
>KOG0925|consensus
Probab=59.48 E-value=6.3 Score=34.11 Aligned_cols=25 Identities=4% Similarity=0.033 Sum_probs=16.7
Q ss_pred HHHHhhcCcCCCCCCCceeEEEEcCCCCCC
Q psy2304 44 IKNVAQTNQLDPNGQRDFKGKFVARGPLVG 73 (85)
Q Consensus 44 IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT 73 (85)
++|.++.+-++ .|+||||||||.=|
T Consensus 148 lrEams~p~l~-----~y~viiLDeahERt 172 (699)
T KOG0925|consen 148 LREAMSDPLLG-----RYGVIILDEAHERT 172 (699)
T ss_pred HHHHhhCcccc-----cccEEEechhhhhh
Confidence 44444444432 69999999999643
No 114
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=58.24 E-value=4.4 Score=31.12 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=15.1
Q ss_pred CCceeEEEEcCCCCCCH
Q psy2304 58 QRDFKGKFVARGPLVGN 74 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT~ 74 (85)
.+.|.+||+||||.|..
T Consensus 81 ~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRT 97 (352)
T ss_pred CCcCCEEEEehhHhhhh
Confidence 35799999999999987
No 115
>PTZ00110 helicase; Provisional
Probab=57.97 E-value=3.3 Score=34.09 Aligned_cols=15 Identities=0% Similarity=-0.157 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++.|||||||.|..
T Consensus 277 ~v~~lViDEAd~mld 291 (545)
T PTZ00110 277 RVTYLVLDEADRMLD 291 (545)
T ss_pred hCcEEEeehHHhhhh
Confidence 579999999998874
No 116
>KOG0328|consensus
Probab=57.85 E-value=3 Score=33.89 Aligned_cols=17 Identities=18% Similarity=0.032 Sum_probs=14.1
Q ss_pred CceeEEEEcCCCCCCHH
Q psy2304 59 RDFKGKFVARGPLVGNP 75 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~ 75 (85)
+..|.+||||||.|.+.
T Consensus 168 r~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNK 184 (400)
T ss_pred cceeEEEeccHHHHHHh
Confidence 46899999999987654
No 117
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=57.51 E-value=8 Score=29.59 Aligned_cols=19 Identities=5% Similarity=-0.129 Sum_probs=14.0
Q ss_pred eeEEEEcCCCCCCHHHHhc
Q psy2304 61 FKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a 79 (85)
-.|++|||.|+|.+.-|.+
T Consensus 102 ~~ILFIDEIHRlnk~~qe~ 120 (233)
T PF05496_consen 102 GDILFIDEIHRLNKAQQEI 120 (233)
T ss_dssp T-EEEECTCCC--HHHHHH
T ss_pred CcEEEEechhhccHHHHHH
Confidence 3499999999999998865
No 118
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=56.56 E-value=4.3 Score=32.99 Aligned_cols=15 Identities=0% Similarity=-0.183 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++.+||||||.|..
T Consensus 270 ~v~~lViDEad~ml~ 284 (518)
T PLN00206 270 NVSVLVLDEVDCMLE 284 (518)
T ss_pred heeEEEeecHHHHhh
Confidence 578999999998864
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=55.65 E-value=5.6 Score=34.61 Aligned_cols=22 Identities=0% Similarity=-0.266 Sum_probs=19.4
Q ss_pred CceeEEEEcCCCCCCHHHHhcc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.|+.||+|||+|++.++.|.+.
T Consensus 556 ~p~sVlllDEieka~~~v~~~L 577 (758)
T PRK11034 556 HPHAVLLLDEIEKAHPDVFNLL 577 (758)
T ss_pred CCCcEEEeccHhhhhHHHHHHH
Confidence 3789999999999999998764
No 120
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=55.58 E-value=4.5 Score=34.18 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++.|||||||.|..
T Consensus 149 ~l~~lVlDEAd~ml~ 163 (629)
T PRK11634 149 KLSGLVLDEADEMLR 163 (629)
T ss_pred hceEEEeccHHHHhh
Confidence 578999999998764
No 121
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.57 E-value=6.7 Score=28.87 Aligned_cols=19 Identities=5% Similarity=-0.157 Sum_probs=16.2
Q ss_pred eeEEEEcCCCCCCHHHHhc
Q psy2304 61 FKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a 79 (85)
..+++|||+|.|+.+.|.+
T Consensus 82 ~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 82 GDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred CCEEEEehHhhhCHHHHHH
Confidence 4699999999999987754
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=54.30 E-value=8.8 Score=33.44 Aligned_cols=22 Identities=0% Similarity=-0.130 Sum_probs=19.4
Q ss_pred CceeEEEEcCCCCCCHHHHhcc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.|+.||+|||+|++.++.|.+.
T Consensus 666 ~p~~vlllDeieka~~~v~~~L 687 (852)
T TIGR03346 666 KPYSVVLFDEVEKAHPDVFNVL 687 (852)
T ss_pred CCCcEEEEeccccCCHHHHHHH
Confidence 3689999999999999999764
No 123
>KOG4284|consensus
Probab=54.21 E-value=8.4 Score=34.48 Aligned_cols=15 Identities=0% Similarity=-0.093 Sum_probs=13.2
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
..+++||||||.|-.
T Consensus 167 ~vrlfVLDEADkL~~ 181 (980)
T KOG4284|consen 167 HVRLFVLDEADKLMD 181 (980)
T ss_pred ceeEEEeccHHhhhc
Confidence 589999999999865
No 124
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=53.92 E-value=7.2 Score=27.45 Aligned_cols=13 Identities=0% Similarity=-0.296 Sum_probs=12.1
Q ss_pred eEEEEcCCCCCCH
Q psy2304 62 KGKFVARGPLVGN 74 (85)
Q Consensus 62 KvvvLdEAD~LT~ 74 (85)
-||+|||.|+..+
T Consensus 70 gVVllDEidKa~~ 82 (171)
T PF07724_consen 70 GVVLLDEIDKAHP 82 (171)
T ss_dssp TEEEEETGGGCSH
T ss_pred hhhhhHHHhhccc
Confidence 3999999999999
No 125
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=53.57 E-value=13 Score=26.59 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=14.8
Q ss_pred eeEEEEcCCCCCCHHHHh
Q psy2304 61 FKGKFVARGPLVGNPWHR 78 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~ 78 (85)
-.++||||||.|+.++..
T Consensus 124 ~~vliiDe~~~l~~~~~~ 141 (269)
T TIGR03015 124 RALLVVDEAQNLTPELLE 141 (269)
T ss_pred CeEEEEECcccCCHHHHH
Confidence 469999999999977644
No 126
>KOG0331|consensus
Probab=53.51 E-value=10 Score=32.10 Aligned_cols=15 Identities=0% Similarity=-0.157 Sum_probs=13.2
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++.+||||||.|-.
T Consensus 239 ~v~ylVLDEADrMld 253 (519)
T KOG0331|consen 239 RVTYLVLDEADRMLD 253 (519)
T ss_pred ceeEEEeccHHhhhc
Confidence 689999999998864
No 127
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=53.22 E-value=5.1 Score=32.81 Aligned_cols=15 Identities=0% Similarity=-0.059 Sum_probs=13.2
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
..+.+||||||.|..
T Consensus 174 ~v~~lVlDEADrmLd 188 (513)
T COG0513 174 GVETLVLDEADRMLD 188 (513)
T ss_pred hcCEEEeccHhhhhc
Confidence 589999999999865
No 128
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=53.13 E-value=4.5 Score=33.59 Aligned_cols=15 Identities=0% Similarity=-0.197 Sum_probs=12.5
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.|..
T Consensus 159 ~v~~lViDEAh~lld 173 (572)
T PRK04537 159 ACEICVLDEADRMFD 173 (572)
T ss_pred heeeeEecCHHHHhh
Confidence 468899999998754
No 129
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=53.12 E-value=8.3 Score=28.52 Aligned_cols=19 Identities=0% Similarity=-0.386 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
.+++|||.|.+.+++|.+.
T Consensus 107 ~~lllDEi~r~~~~~q~~L 125 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVL 125 (262)
T ss_pred CEEEEcchhhCCHHHHHHH
Confidence 4999999999999998764
No 130
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=52.66 E-value=4.4 Score=32.20 Aligned_cols=15 Identities=0% Similarity=-0.161 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.|..
T Consensus 237 ~l~~lViDEah~l~~ 251 (475)
T PRK01297 237 MVEVMVLDEADRMLD 251 (475)
T ss_pred cCceEEechHHHHHh
Confidence 579999999998864
No 131
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=52.58 E-value=11 Score=24.34 Aligned_cols=20 Identities=0% Similarity=-0.438 Sum_probs=15.4
Q ss_pred eeEEEEcCCCCCCHHHHhcc
Q psy2304 61 FKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a~ 80 (85)
=.++||||++...++.|.+.
T Consensus 66 ~~il~lDEin~a~~~v~~~L 85 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESL 85 (139)
T ss_dssp EEEEEESSCGG--HHHHHTT
T ss_pred eeEEEECCcccCCHHHHHHH
Confidence 57999999999999888764
No 132
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.37 E-value=5.1 Score=27.37 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=13.1
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+..+|+||||.+..
T Consensus 143 ~l~~lIvDE~h~~~~ 157 (203)
T cd00268 143 KVKYLVLDEADRMLD 157 (203)
T ss_pred hCCEEEEeChHHhhc
Confidence 589999999999874
No 133
>PRK13766 Hef nuclease; Provisional
Probab=52.11 E-value=6.4 Score=33.13 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=14.7
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.|.+||+||||+++.+.
T Consensus 131 ~~~liVvDEaH~~~~~~ 147 (773)
T PRK13766 131 DVSLLIFDEAHRAVGNY 147 (773)
T ss_pred hCcEEEEECCccccccc
Confidence 58999999999998654
No 134
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=51.77 E-value=24 Score=25.65 Aligned_cols=28 Identities=14% Similarity=-0.155 Sum_probs=22.9
Q ss_pred HHHHHhhcCcCCCCCCCceeEEEEcCCCCCCH
Q psy2304 43 LIKNVAQTNQLDPNGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 43 ~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~ 74 (85)
-+.+.+++.++.+ +-|+||+++++.+++
T Consensus 33 ~l~~~~~~~slf~----~~kliii~~~~~~~~ 60 (302)
T TIGR01128 33 QLLEEAQTLPLFS----ERRLVELRNPEGKPG 60 (302)
T ss_pred HHHHHhhccCccc----CCeEEEEECCCCCCC
Confidence 3778888888864 469999999999875
No 135
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=51.71 E-value=8 Score=24.06 Aligned_cols=61 Identities=10% Similarity=-0.067 Sum_probs=34.8
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCcc-cch---hhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHH
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGIY-DRV---VVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPW 76 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~~-Dr~---VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~A 76 (85)
.++|||.-+..+. .-.++++++++.... ... -+++.+++..... .--|++|||+|.+....
T Consensus 7 ~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 7 PGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA--------KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS--------TSEEEEEETGGGTSHHC
T ss_pred CCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccc--------cceeeeeccchhccccc
Confidence 3456664443332 234679999887521 122 3333343322221 13799999999999886
No 136
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=51.10 E-value=3.2 Score=31.82 Aligned_cols=16 Identities=25% Similarity=0.137 Sum_probs=13.7
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
+++|.++|+||||++.
T Consensus 195 ~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 195 QRGFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSSSEEEECTHHHHT
T ss_pred cCCCCEEEEeccceEE
Confidence 5789999999999754
No 137
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=50.80 E-value=8.5 Score=32.06 Aligned_cols=15 Identities=7% Similarity=-0.113 Sum_probs=13.1
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+||+||||.++.
T Consensus 139 ~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 139 NPALLAVDEAHCISQ 153 (607)
T ss_pred CCCEEEEeCcccccc
Confidence 578999999999874
No 138
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=50.28 E-value=7.5 Score=33.45 Aligned_cols=15 Identities=0% Similarity=-0.106 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+|.|||||||.|..
T Consensus 157 ~l~~vViDEah~~~g 171 (742)
T TIGR03817 157 RLRYVVIDECHSYRG 171 (742)
T ss_pred cCCEEEEeChhhccC
Confidence 479999999999853
No 139
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=49.97 E-value=9.3 Score=31.37 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=13.1
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.++.
T Consensus 127 ~l~~iViDEaH~i~~ 141 (591)
T TIGR01389 127 PIALVAVDEAHCVSQ 141 (591)
T ss_pred CCCEEEEeCCccccc
Confidence 578999999999874
No 140
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=49.94 E-value=9.3 Score=26.81 Aligned_cols=19 Identities=5% Similarity=-0.195 Sum_probs=15.8
Q ss_pred eeEEEEcCCCCCCHHHHhc
Q psy2304 61 FKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a 79 (85)
--+++|||.+.|+.+.|.-
T Consensus 94 ~GtL~Ld~I~~L~~~~Q~~ 112 (168)
T PF00158_consen 94 GGTLFLDEIEDLPPELQAK 112 (168)
T ss_dssp TSEEEEETGGGS-HHHHHH
T ss_pred ceEEeecchhhhHHHHHHH
Confidence 4589999999999999974
No 141
>KOG3655|consensus
Probab=49.89 E-value=13 Score=31.35 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=25.7
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcC
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTN 51 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~ 51 (85)
-.+||+|||+++.--.|..-|++.|+. |.+.
T Consensus 109 lkg~hV~i~Ar~e~Dld~d~i~~~ls~-A~gs 139 (484)
T KOG3655|consen 109 LKGFHVEINARSEEDLDEDAIREKLSK-AVGS 139 (484)
T ss_pred hhcceEEEeccchhhcCHHHHHHHHHh-hhcc
Confidence 589999999999977788888888888 5443
No 142
>PRK04296 thymidine kinase; Provisional
Probab=48.85 E-value=13 Score=26.22 Aligned_cols=16 Identities=0% Similarity=0.169 Sum_probs=13.8
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.+.+||||||+.|+.+
T Consensus 78 ~~dvviIDEaq~l~~~ 93 (190)
T PRK04296 78 KIDCVLIDEAQFLDKE 93 (190)
T ss_pred CCCEEEEEccccCCHH
Confidence 5889999999988765
No 143
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=48.72 E-value=9.4 Score=28.93 Aligned_cols=20 Identities=5% Similarity=-0.132 Sum_probs=16.4
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
...+++|||+|.|+...|..
T Consensus 102 ~~~vl~IDEi~~l~~~~~e~ 121 (328)
T PRK00080 102 EGDVLFIDEIHRLSPVVEEI 121 (328)
T ss_pred cCCEEEEecHhhcchHHHHH
Confidence 35799999999999877653
No 144
>PRK01172 ski2-like helicase; Provisional
Probab=47.79 E-value=7.8 Score=32.36 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=13.1
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.+..
T Consensus 135 ~v~lvViDEaH~l~d 149 (674)
T PRK01172 135 DVGLIVADEIHIIGD 149 (674)
T ss_pred hcCEEEEecchhccC
Confidence 589999999999864
No 145
>KOG0338|consensus
Probab=47.14 E-value=10 Score=32.93 Aligned_cols=19 Identities=0% Similarity=-0.176 Sum_probs=16.0
Q ss_pred ceeEEEEcCCCCCCHHHHh
Q psy2304 60 DFKGKFVARGPLVGNPWHR 78 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~ 78 (85)
.+-|+||||||+|..+..+
T Consensus 327 siEVLvlDEADRMLeegFa 345 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEGFA 345 (691)
T ss_pred ceeEEEechHHHHHHHHHH
Confidence 5789999999999887643
No 146
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=46.58 E-value=8 Score=34.03 Aligned_cols=16 Identities=25% Similarity=0.042 Sum_probs=13.6
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
.++++.+|+||||+|-
T Consensus 193 ~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 193 LRPFNYVIVDEVDSVL 208 (762)
T ss_pred cccCcEEEEecHhhHh
Confidence 4579999999999883
No 147
>KOG1132|consensus
Probab=45.85 E-value=12 Score=33.84 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=16.6
Q ss_pred eEEEEcCCCCCCHHHHhccccc
Q psy2304 62 KGKFVARGPLVGNPWHRASSLQ 83 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~~~~ 83 (85)
-|||+||||+|-.-+-.+.|.+
T Consensus 249 sIVIfDEAHNiEdic~esaS~~ 270 (945)
T KOG1132|consen 249 SIVIFDEAHNIEDICRESASFD 270 (945)
T ss_pred cEEEEeccccHHHHHhhccccc
Confidence 4899999999877666555543
No 148
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=44.90 E-value=9 Score=34.38 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=14.1
Q ss_pred CCceeEEEEcCCCCCCH
Q psy2304 58 QRDFKGKFVARGPLVGN 74 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT~ 74 (85)
+++++.+||||||+|-=
T Consensus 200 ~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 200 QRELNFAIVDEVDSILI 216 (896)
T ss_pred ccccceEEeccHhhhhh
Confidence 35899999999998753
No 149
>PF12846 AAA_10: AAA-like domain
Probab=44.85 E-value=16 Score=25.81 Aligned_cols=19 Identities=5% Similarity=-0.288 Sum_probs=15.7
Q ss_pred CCceeEEEEcCCCCCCHHH
Q psy2304 58 QRDFKGKFVARGPLVGNPW 76 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT~~A 76 (85)
....+++++|||+.+....
T Consensus 218 ~~~~~~i~iDEa~~~~~~~ 236 (304)
T PF12846_consen 218 RGRPKIIVIDEAHNFLSNP 236 (304)
T ss_pred CCceEEEEeCCcccccccc
Confidence 3478999999999988763
No 150
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=44.69 E-value=13 Score=29.76 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=15.0
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.|-+||+||||++.++.
T Consensus 146 ~~~liI~DE~Hh~~a~~ 162 (442)
T COG1061 146 EFGLIIFDEVHHLPAPS 162 (442)
T ss_pred ccCEEEEEccccCCcHH
Confidence 59999999999998754
No 151
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=44.42 E-value=12 Score=25.36 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=12.2
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.|.+||+|||-.++...
T Consensus 192 ~~d~vIvDEAsq~~e~~ 208 (236)
T PF13086_consen 192 KFDVVIVDEASQITEPE 208 (236)
T ss_dssp --SEEEETTGGGS-HHH
T ss_pred cCCEEEEeCCCCcchHH
Confidence 69999999999988644
No 152
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=43.56 E-value=19 Score=23.68 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=15.5
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
-+++|+|.|.|+.++|...
T Consensus 71 gtL~l~~i~~L~~~~Q~~L 89 (138)
T PF14532_consen 71 GTLYLKNIDRLSPEAQRRL 89 (138)
T ss_dssp SEEEEECGCCS-HHHHHHH
T ss_pred CEEEECChHHCCHHHHHHH
Confidence 3799999999999999753
No 153
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=43.08 E-value=9.3 Score=26.59 Aligned_cols=15 Identities=0% Similarity=-0.190 Sum_probs=13.0
Q ss_pred eeEEEEcCCCCCCHH
Q psy2304 61 FKGKFVARGPLVGNP 75 (85)
Q Consensus 61 fKvvvLdEAD~LT~~ 75 (85)
.+++||||+|.|..+
T Consensus 91 ~~lLvIDdi~~l~~~ 105 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQ 105 (226)
T ss_pred CCEEEEeChhhhcCC
Confidence 579999999999874
No 154
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=42.96 E-value=14 Score=32.63 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=13.7
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
.++++.+|+||||+|-
T Consensus 197 ~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 197 QRPLNYAIIDEIDSIL 212 (790)
T ss_pred ccccceEEEeccccce
Confidence 4579999999999874
No 155
>KOG0350|consensus
Probab=42.80 E-value=11 Score=32.56 Aligned_cols=19 Identities=0% Similarity=-0.064 Sum_probs=16.2
Q ss_pred ceeEEEEcCCCCCCHHHHh
Q psy2304 60 DFKGKFVARGPLVGNPWHR 78 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~ 78 (85)
.+|..|+||||+|...+.+
T Consensus 295 ~LrfLVIDEADRll~qsfQ 313 (620)
T KOG0350|consen 295 HLRFLVIDEADRLLDQSFQ 313 (620)
T ss_pred hceEEEechHHHHHHHHHH
Confidence 5899999999999887654
No 156
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=41.89 E-value=12 Score=33.25 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=13.8
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
.++++..|+||||+|-
T Consensus 199 ~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 199 QRGLNYAIVDEVDSIL 214 (830)
T ss_pred ccccceEEEechhhhe
Confidence 5689999999999874
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=41.73 E-value=15 Score=32.18 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=19.1
Q ss_pred CceeEEEEcCCCCCCHHHHhcc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.|+.|++|||+|+|.++.|...
T Consensus 669 ~p~~vLllDEieka~~~v~~~L 690 (857)
T PRK10865 669 RPYSVILLDEVEKAHPDVFNIL 690 (857)
T ss_pred CCCCeEEEeehhhCCHHHHHHH
Confidence 3689999999999999998753
No 158
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=41.64 E-value=16 Score=32.52 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=14.1
Q ss_pred EEEEcCCCCCCHHHHh
Q psy2304 63 GKFVARGPLVGNPWHR 78 (85)
Q Consensus 63 vvvLdEAD~LT~~AQ~ 78 (85)
|++|||.|+|+++.|.
T Consensus 420 v~LLDEIDKm~ss~rG 435 (782)
T COG0466 420 VFLLDEIDKMGSSFRG 435 (782)
T ss_pred eEEeechhhccCCCCC
Confidence 8999999999988663
No 159
>PRK10536 hypothetical protein; Provisional
Probab=41.59 E-value=17 Score=28.18 Aligned_cols=14 Identities=7% Similarity=-0.066 Sum_probs=12.8
Q ss_pred eEEEEcCCCCCCHH
Q psy2304 62 KGKFVARGPLVGNP 75 (85)
Q Consensus 62 KvvvLdEAD~LT~~ 75 (85)
-+||||||.+||..
T Consensus 178 ~~vIvDEaqn~~~~ 191 (262)
T PRK10536 178 AVVILDEAQNVTAA 191 (262)
T ss_pred CEEEEechhcCCHH
Confidence 79999999999984
No 160
>KOG1133|consensus
Probab=40.94 E-value=10 Score=33.79 Aligned_cols=14 Identities=0% Similarity=-0.137 Sum_probs=11.5
Q ss_pred eEEEEcCCCCCCHH
Q psy2304 62 KGKFVARGPLVGNP 75 (85)
Q Consensus 62 KvvvLdEAD~LT~~ 75 (85)
-||||||||+|-..
T Consensus 350 sIvIiDEAHNlidt 363 (821)
T KOG1133|consen 350 SIVIIDEAHNLIDT 363 (821)
T ss_pred cEEEEechhHHHHH
Confidence 48999999998643
No 161
>CHL00181 cbbX CbbX; Provisional
Probab=40.76 E-value=15 Score=27.83 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=10.2
Q ss_pred eEEEEcCCCCC
Q psy2304 62 KGKFVARGPLV 72 (85)
Q Consensus 62 KvvvLdEAD~L 72 (85)
.|++|||+|.|
T Consensus 124 gVLfIDE~~~l 134 (287)
T CHL00181 124 GVLFIDEAYYL 134 (287)
T ss_pred CEEEEEccchh
Confidence 59999999998
No 162
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=40.74 E-value=5.3 Score=29.72 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
+|++||||.++.|-.
T Consensus 81 ~ydtVVIDsI~~l~~ 95 (220)
T TIGR01618 81 KYDNIVIDNISALQN 95 (220)
T ss_pred cCCEEEEecHHHHHH
Confidence 699999999998755
No 163
>PRK02362 ski2-like helicase; Provisional
Probab=40.37 E-value=14 Score=31.32 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 137 ~v~lvViDE~H~l~d 151 (737)
T PRK02362 137 DITCVVVDEVHLIDS 151 (737)
T ss_pred hcCEEEEECccccCC
Confidence 589999999999864
No 164
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=40.18 E-value=12 Score=34.24 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=13.7
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.|+++|+||||+|..
T Consensus 199 ~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 199 KFDFIFVDDVDALLK 213 (1171)
T ss_pred CCCEEEEeChHhhhh
Confidence 689999999999976
No 165
>KOG1681|consensus
Probab=40.10 E-value=92 Score=24.67 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=37.1
Q ss_pred CCCCCeEEEEEc---cccceeEeC-CCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCC
Q psy2304 8 TPSKKKIDIMTT---ASNYHIEVN-PNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPL 71 (85)
Q Consensus 8 t~s~k~~eI~~~---~Sn~hlEln-pSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~ 71 (85)
+++=|+++|.+- ..-||++|| ||...-...+.-+|.-|-|-. ++ ..|.-++|||.-+.+
T Consensus 15 ~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~---l~--~dpdcr~iilsg~GK 77 (292)
T KOG1681|consen 15 DHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDS---LD--RDPDCRAIILSGAGK 77 (292)
T ss_pred ccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHh---hc--cCCCceEEEEecCCc
Confidence 455677888755 577999999 665543334455555544432 22 235789999987653
No 166
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=39.72 E-value=38 Score=25.05 Aligned_cols=28 Identities=14% Similarity=-0.017 Sum_probs=20.9
Q ss_pred HHHHhhcCcCCCCCCCceeEEEEcCCCCCCHH
Q psy2304 44 IKNVAQTNQLDPNGQRDFKGKFVARGPLVGNP 75 (85)
Q Consensus 44 IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~ 75 (85)
+.+.+++.++.+ +-|+||+++++.+...
T Consensus 64 l~~~~~t~~lF~----~~klvii~~~~~l~~~ 91 (340)
T PRK05574 64 VLEACQSLPLFS----DRKLVELRLPEFLTGA 91 (340)
T ss_pred HHHHhhccCccc----cCeEEEEECCCCCCch
Confidence 445666667653 5899999999998764
No 167
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=39.35 E-value=13 Score=30.01 Aligned_cols=16 Identities=0% Similarity=-0.108 Sum_probs=13.7
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
...||+|||+|.|+..
T Consensus 173 ~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 173 QRGIVYIDEIDKIARK 188 (412)
T ss_pred CCcEEEEechhhhccc
Confidence 4689999999999864
No 168
>PF00634 BRCA2: BRCA2 repeat; InterPro: IPR002093 The breast cancer type 2 susceptibility protein has a number of 39 amino acid repeats [] that are critical for binding to RAD51 (a key protein in DNA recombinational repair) and resistance to methyl methanesulphonate treatment [, , ]. BRCA2 is a breast tumour suppressor with a potential function in the cellular response to DNA damage. At the cellular level, expression is regulated in a cell-cycle dependent manner and peak expression of BRCA2 mRNA is found in S phase, suggesting BRCA2 may participate in regulating cell proliferation. There are eight repeats in BRCA2 designated as BRC1 to BRC8. BRC1, BRC2, BRC3, BRC4, BRC7, and BRC8 are highly conserved and bind to Rad51, whereas BRC5 and BRC6 are less well conserved and do not bind to Rad51 []. It has been suggested that BRCA2 plays a role in positioning Rad51 at the site of DNA repair or in removing Rad51 from DNA once repair has been completed. ; GO: 0005515 protein binding, 0006302 double-strand break repair; PDB: 1N0W_B.
Probab=39.26 E-value=12 Score=20.69 Aligned_cols=14 Identities=29% Similarity=0.109 Sum_probs=6.5
Q ss_pred ceeeCCCCCeEEEE
Q psy2304 4 DIKNTPSKKKIDIM 17 (85)
Q Consensus 4 ~~~~t~s~k~~eI~ 17 (85)
..|.|.+||++.|.
T Consensus 6 ~~F~TasGk~v~VS 19 (35)
T PF00634_consen 6 LGFQTASGKKVSVS 19 (35)
T ss_dssp GS-EETTS-B----
T ss_pred CceEcCCCCEEEEc
Confidence 45889999988764
No 169
>KOG0347|consensus
Probab=38.88 E-value=11 Score=33.11 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=17.3
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
..|.+||||||+|-..-++|
T Consensus 340 ~vkcLVlDEaDRmvekghF~ 359 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFE 359 (731)
T ss_pred hceEEEEccHHHHhhhccHH
Confidence 57999999999998887765
No 170
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=38.87 E-value=19 Score=26.57 Aligned_cols=15 Identities=7% Similarity=-0.239 Sum_probs=10.4
Q ss_pred eEEEEcCCCCCCHHH
Q psy2304 62 KGKFVARGPLVGNPW 76 (85)
Q Consensus 62 KvvvLdEAD~LT~~A 76 (85)
.+||+|||-++|+..
T Consensus 121 ~~iIvDEaQN~t~~~ 135 (205)
T PF02562_consen 121 AFIIVDEAQNLTPEE 135 (205)
T ss_dssp EEEEE-SGGG--HHH
T ss_pred eEEEEecccCCCHHH
Confidence 899999999999753
No 171
>PRK13767 ATP-dependent helicase; Provisional
Probab=38.32 E-value=12 Score=32.88 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=13.1
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++.||+||||.|..
T Consensus 172 ~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 172 TVKWVIVDEIHSLAE 186 (876)
T ss_pred cCCEEEEechhhhcc
Confidence 578999999999874
No 172
>KOG0332|consensus
Probab=38.22 E-value=14 Score=30.88 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
..|++||||||.|-+
T Consensus 232 kikvfVlDEAD~Mi~ 246 (477)
T KOG0332|consen 232 KIKVFVLDEADVMID 246 (477)
T ss_pred hceEEEecchhhhhh
Confidence 589999999999865
No 173
>KOG0342|consensus
Probab=37.69 E-value=14 Score=31.60 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=12.6
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
..|.+||||||.|..
T Consensus 230 ~~k~lvlDEADrlLd 244 (543)
T KOG0342|consen 230 NLKCLVLDEADRLLD 244 (543)
T ss_pred ccceeEeecchhhhh
Confidence 468999999999864
No 174
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=37.58 E-value=13 Score=32.69 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=18.0
Q ss_pred CCceeEEEEcCCCCCCHHHHhc
Q psy2304 58 QRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
.++++.+||||||+|-=|.|+.
T Consensus 174 ~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 174 QRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred ccccceeEeecHHHHhHHhhhh
Confidence 3579999999999998866653
No 175
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=36.09 E-value=17 Score=23.46 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=7.7
Q ss_pred ccccceeEeCCCCC
Q psy2304 19 TASNYHIEVNPNDA 32 (85)
Q Consensus 19 ~~Sn~hlElnpSD~ 32 (85)
-.++||||+...+.
T Consensus 18 P~~~YhLEi~~~~~ 31 (93)
T PF14527_consen 18 PKKSYHLEIRFNDE 31 (93)
T ss_dssp TTT---EEEEES-H
T ss_pred CCCceEEEEecCCH
Confidence 34679999999875
No 176
>TIGR00647 MG103 conserved hypothetical protein.
Probab=35.71 E-value=18 Score=28.25 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=17.2
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHH
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNV 47 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~ 47 (85)
++||+|+...+...- ..++++++.|
T Consensus 119 ~~YHLEi~~~~~~~a--~~l~~ll~~f 143 (279)
T TIGR00647 119 SNFHLQISSNNEEQI--DQLCKLFNEF 143 (279)
T ss_pred CceeEEEEeCCHHHH--HHHHHHHHHc
Confidence 599999999886322 3566666655
No 177
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.66 E-value=60 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=34.6
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.-.+.++||-..|.. =+|+++++--+.... + .==|++|||.|++.+.-|-|.
T Consensus 73 ~~~f~~~sAv~~gvk---dlr~i~e~a~~~~~~---g--r~tiLflDEIHRfnK~QQD~l 124 (436)
T COG2256 73 NAAFEALSAVTSGVK---DLREIIEEARKNRLL---G--RRTILFLDEIHRFNKAQQDAL 124 (436)
T ss_pred CCceEEeccccccHH---HHHHHHHHHHHHHhc---C--CceEEEEehhhhcChhhhhhh
Confidence 344688999887764 456666554333222 1 234899999999999888663
No 178
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=35.61 E-value=23 Score=31.09 Aligned_cols=13 Identities=0% Similarity=-0.386 Sum_probs=11.6
Q ss_pred ceeEEEEcCCCCC
Q psy2304 60 DFKGKFVARGPLV 72 (85)
Q Consensus 60 ~fKvvvLdEAD~L 72 (85)
.|++|||||+|..
T Consensus 116 ~v~~IIlDEaHER 128 (812)
T PRK11664 116 GVGLVILDEFHER 128 (812)
T ss_pred cCcEEEEcCCCcc
Confidence 6999999999974
No 179
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=35.09 E-value=17 Score=32.83 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.7
Q ss_pred CCceeEEEEcCCCCCCHH
Q psy2304 58 QRDFKGKFVARGPLVGNP 75 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT~~ 75 (85)
+++|+..|+||||+|--|
T Consensus 200 qr~~~~aIvDEvDsiLiD 217 (908)
T PRK13107 200 QRPLHYALIDEVDSILID 217 (908)
T ss_pred ccccceeeecchhhhccc
Confidence 478999999999987543
No 180
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=34.99 E-value=18 Score=32.57 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
.|.+||+||||+|.
T Consensus 272 ~wdlvIvDEAH~lk 285 (956)
T PRK04914 272 EWDLLVVDEAHHLV 285 (956)
T ss_pred CCCEEEEechhhhc
Confidence 69999999999995
No 181
>PRK09401 reverse gyrase; Reviewed
Probab=33.70 E-value=17 Score=33.27 Aligned_cols=15 Identities=27% Similarity=0.124 Sum_probs=13.5
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.|+.+|+||||+|..
T Consensus 201 ~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 201 KFDFVFVDDVDAVLK 215 (1176)
T ss_pred ccCEEEEEChHHhhh
Confidence 499999999999875
No 182
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=33.31 E-value=22 Score=27.53 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=13.5
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+||+||+|.++.
T Consensus 145 ~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 145 KFSTVIFDEFHLYDA 159 (357)
T ss_pred CCCEEEEecccccCc
Confidence 689999999999985
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=32.89 E-value=20 Score=28.32 Aligned_cols=13 Identities=8% Similarity=-0.248 Sum_probs=10.8
Q ss_pred EEEEcCCCCCCHH
Q psy2304 63 GKFVARGPLVGNP 75 (85)
Q Consensus 63 vvvLdEAD~LT~~ 75 (85)
+||+||||++-+.
T Consensus 175 vivfDEcH~akn~ 187 (303)
T PF13872_consen 175 VIVFDECHKAKNL 187 (303)
T ss_pred eEEeccchhcCCC
Confidence 8999999987553
No 184
>PRK00254 ski2-like helicase; Provisional
Probab=32.76 E-value=24 Score=29.87 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.2
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||+|.|..
T Consensus 138 ~l~lvViDE~H~l~~ 152 (720)
T PRK00254 138 DVKLVVADEIHLIGS 152 (720)
T ss_pred cCCEEEEcCcCccCC
Confidence 589999999999864
No 185
>PRK14701 reverse gyrase; Provisional
Probab=32.05 E-value=23 Score=33.73 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=13.5
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.|+++|+||||+|..
T Consensus 200 ~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 200 KFDFIFVDDVDAFLK 214 (1638)
T ss_pred CCCEEEEECceeccc
Confidence 589999999999975
No 186
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=31.97 E-value=27 Score=27.48 Aligned_cols=19 Identities=5% Similarity=-0.041 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
-+++|||++.|+...|.+.
T Consensus 133 GvL~lDEi~~L~~~~Q~~L 151 (337)
T TIGR02030 133 GILYIDEVNLLEDHLVDVL 151 (337)
T ss_pred CEEEecChHhCCHHHHHHH
Confidence 4899999999999999864
No 187
>KOG0343|consensus
Probab=31.96 E-value=26 Score=30.87 Aligned_cols=16 Identities=0% Similarity=-0.020 Sum_probs=13.3
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
...-++||||||+|..
T Consensus 214 ~~lQmLvLDEADR~LD 229 (758)
T KOG0343|consen 214 SNLQMLVLDEADRMLD 229 (758)
T ss_pred CcceEEEeccHHHHHH
Confidence 3699999999998753
No 188
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=30.97 E-value=61 Score=25.46 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=24.5
Q ss_pred eEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCC
Q psy2304 25 IEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARG 69 (85)
Q Consensus 25 lElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEA 69 (85)
+=-||.+.-+. .+=++.|+.++...+ .-.+||||||
T Consensus 150 ~i~nPNNPTG~--~~~~~~l~~l~~~~~-------~~~~vVvDEA 185 (356)
T COG0079 150 FLCNPNNPTGT--LLPREELRALLEALP-------EGGLVVIDEA 185 (356)
T ss_pred EEeCCCCCCCC--CCCHHHHHHHHHhCC-------CCcEEEEeCc
Confidence 33467777443 777777777777532 2568999998
No 189
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=30.97 E-value=23 Score=30.06 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=13.4
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
+.+++||+||+|.+..
T Consensus 382 ~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 382 HNLGLVIIDEQHRFGV 397 (681)
T ss_pred cccceEEEechhhhhH
Confidence 3689999999999853
No 190
>KOG0345|consensus
Probab=30.59 E-value=20 Score=30.74 Aligned_cols=15 Identities=0% Similarity=-0.079 Sum_probs=12.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
..-++||||||.|-.
T Consensus 157 sLe~LVLDEADrLld 171 (567)
T KOG0345|consen 157 SLEILVLDEADRLLD 171 (567)
T ss_pred ccceEEecchHhHhc
Confidence 567999999998753
No 191
>KOG0327|consensus
Probab=30.55 E-value=25 Score=29.06 Aligned_cols=17 Identities=6% Similarity=-0.109 Sum_probs=13.9
Q ss_pred CCceeEEEEcCCCCCCH
Q psy2304 58 QRDFKGKFVARGPLVGN 74 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT~ 74 (85)
..+.|++||||||.|-+
T Consensus 167 ~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 167 TDGIKMFVLDEADEMLS 183 (397)
T ss_pred ccceeEEeecchHhhhc
Confidence 34799999999997754
No 192
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=29.87 E-value=29 Score=29.11 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+||+||+|.+..
T Consensus 357 ~l~lvVIDEaH~fg~ 371 (630)
T TIGR00643 357 RLALVIIDEQHRFGV 371 (630)
T ss_pred ccceEEEechhhccH
Confidence 589999999999754
No 193
>KOG2028|consensus
Probab=29.26 E-value=61 Score=27.55 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=33.6
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHH
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWH 77 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ 77 (85)
.|-+++|+.+-.++.. =+|++++.--.-.++. +.=-|++|||.|+....-|
T Consensus 189 ~SyrfvelSAt~a~t~---dvR~ife~aq~~~~l~----krkTilFiDEiHRFNksQQ 239 (554)
T KOG2028|consen 189 HSYRFVELSATNAKTN---DVRDIFEQAQNEKSLT----KRKTILFIDEIHRFNKSQQ 239 (554)
T ss_pred CceEEEEEeccccchH---HHHHHHHHHHHHHhhh----cceeEEEeHHhhhhhhhhh
Confidence 4566899999998764 4666665543333332 1345889999999866544
No 194
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=29.17 E-value=24 Score=31.54 Aligned_cols=13 Identities=0% Similarity=-0.302 Sum_probs=10.9
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
..+++|||||| |.
T Consensus 171 ~v~~LVLDEAD-Ld 183 (844)
T TIGR02621 171 QDALIVHDEAH-LE 183 (844)
T ss_pred cceEEEEehhh-hc
Confidence 47899999999 54
No 195
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=28.98 E-value=28 Score=30.69 Aligned_cols=12 Identities=0% Similarity=-0.285 Sum_probs=11.0
Q ss_pred ceeEEEEcCCCC
Q psy2304 60 DFKGKFVARGPL 71 (85)
Q Consensus 60 ~fKvvvLdEAD~ 71 (85)
.|++|||||||.
T Consensus 113 ~v~~VIiDEaHE 124 (819)
T TIGR01970 113 GVGALIFDEFHE 124 (819)
T ss_pred cCCEEEEeccch
Confidence 699999999995
No 196
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=28.96 E-value=36 Score=30.16 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=18.1
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
.|-++|+|||..++.+|-.+
T Consensus 352 tfDLLIVDEAqFIk~~al~~ 371 (738)
T PHA03368 352 DFNLLFVDEANFIRPDAVQT 371 (738)
T ss_pred cccEEEEechhhCCHHHHHH
Confidence 79999999999999988765
No 197
>KOG0745|consensus
Probab=28.80 E-value=21 Score=30.56 Aligned_cols=15 Identities=7% Similarity=-0.128 Sum_probs=12.5
Q ss_pred eEEEEcCCCCCCHHH
Q psy2304 62 KGKFVARGPLVGNPW 76 (85)
Q Consensus 62 KvvvLdEAD~LT~~A 76 (85)
=+|+|||+|+++..|
T Consensus 293 GIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKA 307 (564)
T ss_pred CeEEEehhhhhcccC
Confidence 489999999999543
No 198
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=28.76 E-value=30 Score=28.14 Aligned_cols=12 Identities=0% Similarity=-0.047 Sum_probs=11.3
Q ss_pred EEEEcCCCCCCH
Q psy2304 63 GKFVARGPLVGN 74 (85)
Q Consensus 63 vvvLdEAD~LT~ 74 (85)
+|+|||+|+++.
T Consensus 184 IV~lDEIdkl~~ 195 (413)
T TIGR00382 184 IIYIDEIDKISR 195 (413)
T ss_pred eEEecccchhch
Confidence 899999999987
No 199
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=28.74 E-value=47 Score=31.16 Aligned_cols=12 Identities=0% Similarity=0.116 Sum_probs=10.9
Q ss_pred ceeEEEEcCCCC
Q psy2304 60 DFKGKFVARGPL 71 (85)
Q Consensus 60 ~fKvvvLdEAD~ 71 (85)
.|++|||||||.
T Consensus 186 ~~~~IIIDEAHE 197 (1294)
T PRK11131 186 QYDTIIIDEAHE 197 (1294)
T ss_pred cCcEEEecCccc
Confidence 589999999995
No 200
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=28.70 E-value=26 Score=24.85 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=13.1
Q ss_pred CceeEEEEcCCCCCCHH
Q psy2304 59 RDFKGKFVARGPLVGNP 75 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~ 75 (85)
+++.++|+|||-.++..
T Consensus 92 ~~~~vliVDEasmv~~~ 108 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSR 108 (196)
T ss_dssp TSTSEEEESSGGG-BHH
T ss_pred CcccEEEEecccccCHH
Confidence 35789999999988754
No 201
>KOG0329|consensus
Probab=28.54 E-value=21 Score=28.81 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=22.1
Q ss_pred HHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHH
Q psy2304 43 LIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPW 76 (85)
Q Consensus 43 ~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~A 76 (85)
.|.-+++.+.++.. ..|-+||||+|+|....
T Consensus 171 rilALvr~k~l~lk---~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 171 RILALVRNRSLNLK---NVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHhccCchh---hcceeehhhHHHHHHHH
Confidence 35566676666543 58999999999886643
No 202
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=28.29 E-value=41 Score=28.44 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
.+++|||+|.|....|...
T Consensus 267 GvL~LDEi~~Ld~~~Q~~L 285 (615)
T TIGR02903 267 GVLFIDEIGELDPLLQNKL 285 (615)
T ss_pred CeEEEeccccCCHHHHHHH
Confidence 4999999999999999753
No 203
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=28.26 E-value=33 Score=26.98 Aligned_cols=18 Identities=6% Similarity=-0.058 Sum_probs=16.5
Q ss_pred EEEEcCCCCCCHHHHhcc
Q psy2304 63 GKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 63 vvvLdEAD~LT~~AQ~a~ 80 (85)
+++|||++.|+...|.+.
T Consensus 131 iL~lDEInrl~~~~q~~L 148 (334)
T PRK13407 131 YLYIDEVNLLEDHIVDLL 148 (334)
T ss_pred eEEecChHhCCHHHHHHH
Confidence 899999999999999864
No 204
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=28.15 E-value=28 Score=23.78 Aligned_cols=10 Identities=50% Similarity=0.923 Sum_probs=8.3
Q ss_pred ccceeEeCCC
Q psy2304 21 SNYHIEVNPN 30 (85)
Q Consensus 21 Sn~hlElnpS 30 (85)
--|.||+||.
T Consensus 148 ~~~viEINPR 157 (161)
T PF02655_consen 148 GPYVIEINPR 157 (161)
T ss_dssp SEEEEEEESS
T ss_pred cEEEEEEcCC
Confidence 5699999995
No 205
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=27.79 E-value=36 Score=24.98 Aligned_cols=16 Identities=0% Similarity=-0.408 Sum_probs=12.6
Q ss_pred eeEEEEcCCCCCCHHH
Q psy2304 61 FKGKFVARGPLVGNPW 76 (85)
Q Consensus 61 fKvvvLdEAD~LT~~A 76 (85)
=-|||+||-|++.++-
T Consensus 173 ~iViiIDdLDR~~~~~ 188 (325)
T PF07693_consen 173 RIVIIIDDLDRCSPEE 188 (325)
T ss_pred eEEEEEcchhcCCcHH
Confidence 4567789999998773
No 206
>PF13173 AAA_14: AAA domain
Probab=27.73 E-value=35 Score=22.07 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=26.9
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHh
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHR 78 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~ 78 (85)
...+.+|..|....... ..+..+.+.+. .. +..++|||||++.+. +|+.
T Consensus 30 ~~~~yi~~~~~~~~~~~-~~~~~~~~~~~--~~----~~~~~i~iDEiq~~~-~~~~ 78 (128)
T PF13173_consen 30 ENILYINFDDPRDRRLA-DPDLLEYFLEL--IK----PGKKYIFIDEIQYLP-DWED 78 (128)
T ss_pred ccceeeccCCHHHHHHh-hhhhHHHHHHh--hc----cCCcEEEEehhhhhc-cHHH
Confidence 44688888876442111 11123333332 10 147899999999986 3443
No 207
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=27.72 E-value=37 Score=26.96 Aligned_cols=18 Identities=0% Similarity=-0.416 Sum_probs=16.2
Q ss_pred eEEEEcCCCCCCHHHHhc
Q psy2304 62 KGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a 79 (85)
-+++|||.|...++.|.+
T Consensus 136 ~illlDEin~a~p~~~~~ 153 (327)
T TIGR01650 136 VALCFDEYDAGRPDVMFV 153 (327)
T ss_pred eEEEechhhccCHHHHHH
Confidence 469999999999999977
No 208
>KOG0326|consensus
Probab=27.36 E-value=27 Score=28.99 Aligned_cols=16 Identities=6% Similarity=-0.172 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.-.++|+||||+|.+.
T Consensus 227 ~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 227 DCVILVMDEADKLLSV 242 (459)
T ss_pred hceEEEechhhhhhch
Confidence 4689999999987653
No 209
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=27.29 E-value=23 Score=30.56 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=13.1
Q ss_pred EEEEcCCCCCCHHHH
Q psy2304 63 GKFVARGPLVGNPWH 77 (85)
Q Consensus 63 vvvLdEAD~LT~~AQ 77 (85)
||+|||+|+|+++.|
T Consensus 417 villDEidk~~~~~~ 431 (775)
T TIGR00763 417 LFLLDEIDKIGSSFR 431 (775)
T ss_pred EEEEechhhcCCccC
Confidence 999999999987654
No 210
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=26.90 E-value=37 Score=22.63 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=27.1
Q ss_pred cceeeCCCCCeEEEEEccccceeEeCCCCCCc
Q psy2304 3 SDIKNTPSKKKIDIMTTASNYHIEVNPNDAGI 34 (85)
Q Consensus 3 ~~~~~t~s~k~~eI~~~~Sn~hlElnpSD~g~ 34 (85)
.++|.-||||.++..-...--..||-|...+.
T Consensus 28 ~kEf~lpsGkR~D~id~~~k~IyELKPnNPr~ 59 (89)
T PF15650_consen 28 EKEFRLPSGKRPDFIDFETKIIYELKPNNPRA 59 (89)
T ss_pred eeeeecCCCCcCccccCCcceEEEecCCCHHH
Confidence 47898899999998887887789999998744
No 211
>KOG0922|consensus
Probab=26.89 E-value=48 Score=29.12 Aligned_cols=12 Identities=0% Similarity=-0.003 Sum_probs=10.8
Q ss_pred ceeEEEEcCCCC
Q psy2304 60 DFKGKFVARGPL 71 (85)
Q Consensus 60 ~fKvvvLdEAD~ 71 (85)
.|-+|||||||.
T Consensus 163 kYsvIIlDEAHE 174 (674)
T KOG0922|consen 163 KYSVIILDEAHE 174 (674)
T ss_pred cccEEEEechhh
Confidence 589999999995
No 212
>PRK15115 response regulator GlrR; Provisional
Probab=26.84 E-value=48 Score=25.69 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=16.2
Q ss_pred eEEEEcCCCCCCHHHHhc
Q psy2304 62 KGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a 79 (85)
.+++|||+|.|+.+.|..
T Consensus 230 gtl~l~~i~~l~~~~q~~ 247 (444)
T PRK15115 230 GTLFLDEIGDMPAPLQVK 247 (444)
T ss_pred CEEEEEccccCCHHHHHH
Confidence 589999999999999864
No 213
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=26.61 E-value=59 Score=21.10 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=16.1
Q ss_pred eEEEEcCCC-CCCHHHHhc
Q psy2304 62 KGKFVARGP-LVGNPWHRA 79 (85)
Q Consensus 62 KvvvLdEAD-~LT~~AQ~a 79 (85)
.+++|||-| .|-+.+|+.
T Consensus 259 ~illiDEpE~~LHp~~q~~ 277 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRK 277 (303)
T ss_dssp SEEEEESSSTTSSHHHHHH
T ss_pred eEEEecCCcCCCCHHHHHH
Confidence 899999999 899999864
No 214
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=26.59 E-value=22 Score=30.06 Aligned_cols=19 Identities=5% Similarity=-0.272 Sum_probs=15.4
Q ss_pred ceeEEEEcCCCCCCH--HHHh
Q psy2304 60 DFKGKFVARGPLVGN--PWHR 78 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~--~AQ~ 78 (85)
..|++|+|||+.|.. ..+.
T Consensus 637 ~~~~~viDEaw~ll~~~~~~~ 657 (797)
T TIGR02746 637 RRKICIIDEAWSLLDGANPQA 657 (797)
T ss_pred CceEEEEecHHHHhhcccHHH
Confidence 479999999999987 4443
No 215
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=26.33 E-value=41 Score=25.96 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCCHHHHhc
Q psy2304 62 KGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a 79 (85)
-+++|||+|.|+.+.|..
T Consensus 95 GtL~Ldei~~L~~~~Q~~ 112 (329)
T TIGR02974 95 GTLFLDELATASLLVQEK 112 (329)
T ss_pred CEEEeCChHhCCHHHHHH
Confidence 579999999999999974
No 216
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=26.26 E-value=30 Score=24.27 Aligned_cols=17 Identities=0% Similarity=-0.357 Sum_probs=10.6
Q ss_pred eeEEEEcCCCCCCHHHH
Q psy2304 61 FKGKFVARGPLVGNPWH 77 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ 77 (85)
--++|||||+..-+.-.
T Consensus 80 ~~liviDEa~~~~~~r~ 96 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRS 96 (193)
T ss_dssp T-EEEETTGGGTSB---
T ss_pred CcEEEEECChhhcCCCc
Confidence 46999999997655433
No 217
>PHA02244 ATPase-like protein
Probab=26.04 E-value=50 Score=27.01 Aligned_cols=19 Identities=5% Similarity=-0.449 Sum_probs=16.8
Q ss_pred eeEEEEcCCCCCCHHHHhc
Q psy2304 61 FKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a 79 (85)
-.+++|||.|.+.+++|..
T Consensus 181 GgvLiLDEId~a~p~vq~~ 199 (383)
T PHA02244 181 GGLFFIDEIDASIPEALII 199 (383)
T ss_pred CCEEEEeCcCcCCHHHHHH
Confidence 4699999999999999864
No 218
>PF13479 AAA_24: AAA domain
Probab=25.87 E-value=36 Score=24.27 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=32.6
Q ss_pred CCCCCeEEEEEccccceeEeCCCCCCcc-----cc------hhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCH
Q psy2304 8 TPSKKKIDIMTTASNYHIEVNPNDAGIY-----DR------VVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 8 t~s~k~~eI~~~~Sn~hlElnpSD~g~~-----Dr------~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~ 74 (85)
+.+|||.-...+-...+|-+..+..+.. +. .-+.+.++++... ..+|++||||-++.|-.
T Consensus 12 ~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~-------~~~y~tiVIDsis~~~~ 82 (213)
T PF13479_consen 12 PGSGKTTLAASLPKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED-------EADYDTIVIDSISWLED 82 (213)
T ss_pred CCCCHHHHHHhCCCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc-------cCCCCEEEEECHHHHHH
Confidence 5667775555555555666655522111 11 1223444444333 22799999999887643
No 219
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=25.69 E-value=36 Score=29.51 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=13.9
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
+++|-..|+||||++-
T Consensus 240 ~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 240 LRGLHFAIVDEADSVL 255 (656)
T ss_pred ccccceeEeeccccee
Confidence 5689999999999864
No 220
>KOG1000|consensus
Probab=25.20 E-value=35 Score=29.78 Aligned_cols=16 Identities=0% Similarity=0.194 Sum_probs=13.4
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
.+.|++||+||.|.|-
T Consensus 306 ~~~~~vvI~DEsH~Lk 321 (689)
T KOG1000|consen 306 KEKYRVVIFDESHMLK 321 (689)
T ss_pred cccceEEEEechhhhh
Confidence 3469999999999874
No 221
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=25.09 E-value=39 Score=28.20 Aligned_cols=16 Identities=0% Similarity=-0.251 Sum_probs=13.4
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
+=..||||||-+||+-
T Consensus 351 ~~~FiIIDEaQNLTph 366 (436)
T COG1875 351 PDSFIIIDEAQNLTPH 366 (436)
T ss_pred ccceEEEehhhccCHH
Confidence 3578999999999974
No 222
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=24.86 E-value=38 Score=30.91 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=14.6
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.+..||+||||.|-+..
T Consensus 291 ~W~~VIvDEAHrIKN~~ 307 (1033)
T PLN03142 291 SWRYIIIDEAHRIKNEN 307 (1033)
T ss_pred CCCEEEEcCccccCCHH
Confidence 68999999999998753
No 223
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=24.81 E-value=1.2e+02 Score=20.90 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=22.8
Q ss_pred ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCC
Q psy2304 35 YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARG 69 (85)
Q Consensus 35 ~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEA 69 (85)
.+...|.+++ +.|+..|... +..|++++|+..-
T Consensus 18 V~~e~i~~il-eaA~~APS~~-N~Qpw~fvVv~~~ 50 (196)
T cd02145 18 VPEEVLERLL-AAAHHAPSVG-LSQPWRFIRVRDP 50 (196)
T ss_pred CCHHHHHHHH-HHHHhCCCcC-CCCCeEEEEEcCH
Confidence 3557788888 6666666543 3458999999653
No 224
>KOG2355|consensus
Probab=24.64 E-value=39 Score=26.60 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=9.8
Q ss_pred CceeEEEEcCC
Q psy2304 59 RDFKGKFVARG 69 (85)
Q Consensus 59 ~~fKvvvLdEA 69 (85)
+||||++|||+
T Consensus 164 ~PfkVLLLDEV 174 (291)
T KOG2355|consen 164 KPFKVLLLDEV 174 (291)
T ss_pred cceeEEEeeee
Confidence 48999999996
No 225
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=24.34 E-value=57 Score=25.09 Aligned_cols=17 Identities=6% Similarity=-0.127 Sum_probs=15.2
Q ss_pred EEEEcCCCCCCHHHHhc
Q psy2304 63 GKFVARGPLVGNPWHRA 79 (85)
Q Consensus 63 vvvLdEAD~LT~~AQ~a 79 (85)
+++|||+|.|..+.|..
T Consensus 236 tl~ldei~~l~~~~q~~ 252 (441)
T PRK10365 236 TLFLDEIGDISPMMQVR 252 (441)
T ss_pred EEEEeccccCCHHHHHH
Confidence 59999999999998864
No 226
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.06 E-value=48 Score=28.58 Aligned_cols=18 Identities=22% Similarity=-0.202 Sum_probs=14.6
Q ss_pred CceeEEEEcCCCCCCHHH
Q psy2304 59 RDFKGKFVARGPLVGNPW 76 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~A 76 (85)
...+||+|||+|++....
T Consensus 194 ~~~~IILIDEiPn~~~r~ 211 (637)
T TIGR00602 194 TDKKIILVEDLPNQFYRD 211 (637)
T ss_pred CceeEEEeecchhhchhh
Confidence 468999999998887543
No 227
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=24.03 E-value=43 Score=29.99 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=13.5
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
+.++++||||+|++..
T Consensus 572 ~~L~llVIDEahrfgv 587 (926)
T TIGR00580 572 KDLGLLIIDEEQRFGV 587 (926)
T ss_pred ccCCEEEeecccccch
Confidence 3689999999999854
No 228
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=24.00 E-value=45 Score=26.54 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=16.4
Q ss_pred eEEEEcCCCCCCHHHHhc
Q psy2304 62 KGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a 79 (85)
=+++|||++.|++..|.+
T Consensus 146 GiL~lDEInrL~~~~Q~~ 163 (350)
T CHL00081 146 GILYVDEVNLLDDHLVDI 163 (350)
T ss_pred CEEEecChHhCCHHHHHH
Confidence 389999999999999986
No 229
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.66 E-value=50 Score=29.03 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=14.6
Q ss_pred CceeEEEEcCCCCCCHHH
Q psy2304 59 RDFKGKFVARGPLVGNPW 76 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~A 76 (85)
+.|-+||+||||.+.+..
T Consensus 374 ~~~gLII~DEvH~lpA~~ 391 (732)
T TIGR00603 374 REWGLILLDEVHVVPAAM 391 (732)
T ss_pred ccCCEEEEEccccccHHH
Confidence 368899999999996544
No 230
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=23.63 E-value=52 Score=25.48 Aligned_cols=19 Identities=0% Similarity=-0.289 Sum_probs=16.5
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
-+++|||+|.|..+.|...
T Consensus 239 gtl~ld~i~~l~~~~q~~L 257 (457)
T PRK11361 239 GTLLLDEIGEMPLVLQAKL 257 (457)
T ss_pred CEEEEechhhCCHHHHHHH
Confidence 3899999999999998753
No 231
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=23.32 E-value=56 Score=25.36 Aligned_cols=18 Identities=6% Similarity=-0.176 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCCHHHHhc
Q psy2304 62 KGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a 79 (85)
-+++|||+|.|+.+.|..
T Consensus 235 gtl~l~~i~~l~~~~q~~ 252 (445)
T TIGR02915 235 GTLFLDEIGDLPLNLQAK 252 (445)
T ss_pred CEEEEechhhCCHHHHHH
Confidence 479999999999999965
No 232
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.10 E-value=28 Score=29.55 Aligned_cols=20 Identities=20% Similarity=-0.031 Sum_probs=14.9
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
|==|+++||||-|-++|=.|
T Consensus 255 PklVfFfDEAHLLF~da~ka 274 (502)
T PF05872_consen 255 PKLVFFFDEAHLLFNDAPKA 274 (502)
T ss_pred ceEEEEEechhhhhcCCCHH
Confidence 44457799999998887544
No 233
>smart00350 MCM minichromosome maintenance proteins.
Probab=22.92 E-value=50 Score=27.04 Aligned_cols=19 Identities=5% Similarity=-0.219 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
.+++|||.|.|....|.+.
T Consensus 302 Gil~iDEi~~l~~~~q~~L 320 (509)
T smart00350 302 GVCCIDEFDKMDDSDRTAI 320 (509)
T ss_pred CEEEEechhhCCHHHHHHH
Confidence 4899999999999998864
No 234
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=22.67 E-value=31 Score=27.24 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=11.7
Q ss_pred ceeEEEEcCCCCC
Q psy2304 60 DFKGKFVARGPLV 72 (85)
Q Consensus 60 ~fKvvvLdEAD~L 72 (85)
..|++||||.|++
T Consensus 145 ~vrmLIIDE~H~l 157 (302)
T PF05621_consen 145 GVRMLIIDEFHNL 157 (302)
T ss_pred CCcEEEeechHHH
Confidence 4799999999986
No 235
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=22.57 E-value=12 Score=30.58 Aligned_cols=57 Identities=19% Similarity=0.113 Sum_probs=31.4
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCc----ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCC
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGI----YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVG 73 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~----~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT 73 (85)
+++|||.-...++ +..++++..++... .....++++.+. |... .--+++|||+|.+.
T Consensus 226 PGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~-A~~~--------~P~ILfIDEID~l~ 289 (438)
T PTZ00361 226 PGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRV-AEEN--------APSIVFIDEIDAIG 289 (438)
T ss_pred CCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHH-HHhC--------CCcEEeHHHHHHHh
Confidence 5667765444442 34567887776411 112335555543 2221 13489999999874
No 236
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=22.26 E-value=34 Score=23.08 Aligned_cols=12 Identities=0% Similarity=-0.222 Sum_probs=11.0
Q ss_pred eEEEEcCCCCCC
Q psy2304 62 KGKFVARGPLVG 73 (85)
Q Consensus 62 KvvvLdEAD~LT 73 (85)
-+|||||+|.+.
T Consensus 120 ~iiviDe~~~~~ 131 (234)
T PF01637_consen 120 VIIVIDEFQYLA 131 (234)
T ss_dssp EEEEEETGGGGG
T ss_pred EEEEEecHHHHh
Confidence 789999999887
No 237
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=22.16 E-value=71 Score=22.10 Aligned_cols=16 Identities=6% Similarity=0.191 Sum_probs=13.9
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
+++.++|||+-.+.+.
T Consensus 62 ~~~~liiDE~~~~~~g 77 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG 77 (234)
T ss_pred cCCEEEEeccccCChH
Confidence 5999999999998863
No 238
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=21.96 E-value=46 Score=25.09 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=10.4
Q ss_pred eEEEEcCCCCCC
Q psy2304 62 KGKFVARGPLVG 73 (85)
Q Consensus 62 KvvvLdEAD~LT 73 (85)
-+++|||+|.|.
T Consensus 123 gvL~iDEi~~L~ 134 (284)
T TIGR02880 123 GVLFIDEAYYLY 134 (284)
T ss_pred cEEEEechhhhc
Confidence 499999999884
No 239
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=21.86 E-value=61 Score=20.91 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=16.7
Q ss_pred cccchhhHHHHHHHhhcCcC
Q psy2304 34 IYDRVVVMELIKNVAQTNQL 53 (85)
Q Consensus 34 ~~Dr~VVq~~IK~~A~t~~~ 53 (85)
..|+.-||.+||.+|+-...
T Consensus 27 lqdE~~vR~lIk~vs~~an~ 46 (79)
T PF14069_consen 27 LQDEKKVRQLIKQVSQIANK 46 (79)
T ss_pred cccHHHHHHHHHHHHHHhCC
Confidence 47889999999999987543
No 240
>PF14516 AAA_35: AAA-like domain
Probab=21.49 E-value=42 Score=25.81 Aligned_cols=15 Identities=7% Similarity=-0.263 Sum_probs=12.2
Q ss_pred EEEEcCCCCCCHHHH
Q psy2304 63 GKFVARGPLVGNPWH 77 (85)
Q Consensus 63 vvvLdEAD~LT~~AQ 77 (85)
|++|||+|++.+.-+
T Consensus 130 VL~iDEiD~l~~~~~ 144 (331)
T PF14516_consen 130 VLFIDEIDRLFEYPQ 144 (331)
T ss_pred EEEEechhhhccCcc
Confidence 889999999987433
No 241
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=21.31 E-value=57 Score=26.48 Aligned_cols=18 Identities=0% Similarity=-0.298 Sum_probs=14.6
Q ss_pred ceeEEEEcCCCCCCHHHHh
Q psy2304 60 DFKGKFVARGPLVGNPWHR 78 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~ 78 (85)
+--+||||||++ |-.+|.
T Consensus 243 ~dAfVIlDEaQN-tT~~Qm 260 (348)
T COG1702 243 NDAFVILDEAQN-TTVGQM 260 (348)
T ss_pred CCeEEEEecccc-cchhhh
Confidence 356899999999 777775
No 242
>KOG0336|consensus
Probab=21.28 E-value=34 Score=29.32 Aligned_cols=14 Identities=0% Similarity=-0.180 Sum_probs=11.2
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
..--+||||||+|.
T Consensus 367 siTYlVlDEADrML 380 (629)
T KOG0336|consen 367 SITYLVLDEADRML 380 (629)
T ss_pred eeEEEEecchhhhh
Confidence 35678999999875
No 243
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=21.17 E-value=1e+02 Score=23.24 Aligned_cols=29 Identities=3% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHH
Q psy2304 42 ELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNP 75 (85)
Q Consensus 42 ~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~ 75 (85)
++.+.++.... .++..+|++|||..|+++
T Consensus 69 ~i~~~i~~~~~-----~~~~~~v~IDEaQF~~~~ 97 (201)
T COG1435 69 DIFDEIAALHE-----KPPVDCVLIDEAQFFDEE 97 (201)
T ss_pred HHHHHHHhccc-----CCCcCEEEEehhHhCCHH
Confidence 45555655432 124789999999999875
No 244
>KOG0348|consensus
Probab=21.07 E-value=56 Score=28.74 Aligned_cols=14 Identities=0% Similarity=-0.109 Sum_probs=12.1
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
..+-+||||||+|-
T Consensus 287 ~LRwlVlDEaDrll 300 (708)
T KOG0348|consen 287 RLRWLVLDEADRLL 300 (708)
T ss_pred eeeEEEecchhHHH
Confidence 47899999999874
No 245
>PRK05580 primosome assembly protein PriA; Validated
Probab=21.01 E-value=59 Score=27.76 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||+|..+-
T Consensus 258 ~l~liVvDEeh~~s~ 272 (679)
T PRK05580 258 NLGLIIVDEEHDSSY 272 (679)
T ss_pred CCCEEEEECCCcccc
Confidence 589999999997764
No 246
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=20.84 E-value=75 Score=29.81 Aligned_cols=12 Identities=0% Similarity=0.083 Sum_probs=10.9
Q ss_pred ceeEEEEcCCCC
Q psy2304 60 DFKGKFVARGPL 71 (85)
Q Consensus 60 ~fKvvvLdEAD~ 71 (85)
.|.+|||||||.
T Consensus 179 ~~~~IIIDEaHE 190 (1283)
T TIGR01967 179 RYDTIIIDEAHE 190 (1283)
T ss_pred cCcEEEEcCcch
Confidence 599999999994
No 247
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=20.62 E-value=40 Score=29.50 Aligned_cols=16 Identities=0% Similarity=-0.203 Sum_probs=13.7
Q ss_pred eEEEEcCCCCCCHHHH
Q psy2304 62 KGKFVARGPLVGNPWH 77 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ 77 (85)
.|++|||+|+++.+.|
T Consensus 418 ~villDEidk~~~~~~ 433 (784)
T PRK10787 418 PLFLLDEIDKMSSDMR 433 (784)
T ss_pred CEEEEEChhhcccccC
Confidence 4899999999998754
No 248
>KOG0385|consensus
Probab=20.57 E-value=46 Score=30.29 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=14.2
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
++|.+|+||||++-+.
T Consensus 289 ~W~ylvIDEaHRiKN~ 304 (971)
T KOG0385|consen 289 NWRYLVIDEAHRIKNE 304 (971)
T ss_pred CceEEEechhhhhcch
Confidence 7999999999998764
No 249
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=20.35 E-value=53 Score=26.56 Aligned_cols=17 Identities=6% Similarity=-0.115 Sum_probs=14.5
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
+--|++|||.|+|++.+
T Consensus 103 ~~DVLFIDEIHrl~~~v 119 (332)
T COG2255 103 EGDVLFIDEIHRLSPAV 119 (332)
T ss_pred cCCeEEEehhhhcChhH
Confidence 46799999999999865
No 250
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=20.30 E-value=69 Score=24.92 Aligned_cols=19 Identities=5% Similarity=-0.251 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
-+++|||+|.|+.+.|...
T Consensus 230 gtl~l~ei~~l~~~~q~~l 248 (463)
T TIGR01818 230 GTLFLDEIGDMPLDAQTRL 248 (463)
T ss_pred CeEEEEchhhCCHHHHHHH
Confidence 3599999999999998643
No 251
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=20.27 E-value=55 Score=27.64 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=17.0
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
-+++|||++.|+...|.+.
T Consensus 128 GiL~lDEi~~l~~~~q~~L 146 (633)
T TIGR02442 128 GILYIDEVNLLDDHLVDVL 146 (633)
T ss_pred CeEEeChhhhCCHHHHHHH
Confidence 4999999999999999864
No 252
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=20.18 E-value=45 Score=31.00 Aligned_cols=72 Identities=10% Similarity=0.019 Sum_probs=39.3
Q ss_pred eCCCCCeEEEEEcc-------------ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCC---------------CCC
Q psy2304 7 NTPSKKKIDIMTTA-------------SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDP---------------NGQ 58 (85)
Q Consensus 7 ~t~s~k~~eI~~~~-------------Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~---------------~~~ 58 (85)
.+++|||..+..+. .-.+++|||...... ..+.+.+.+.+....+... ...
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp-~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~ 867 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP-NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDN 867 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH-HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhccc
Confidence 37888886665551 023579999654221 2344444444422211100 011
Q ss_pred CceeEEEEcCCCCCCHHHHhc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a 79 (85)
+..-||||||+|.|....|.+
T Consensus 868 r~v~IIILDEID~L~kK~QDV 888 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKTQKV 888 (1164)
T ss_pred ccceEEEeehHhhhCccHHHH
Confidence 235699999999998765543
No 253
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=20.03 E-value=39 Score=31.52 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+..|||||||.|+.
T Consensus 581 ~LslIVIDEAHcVSq 595 (1195)
T PLN03137 581 LLARFVIDEAHCVSQ 595 (1195)
T ss_pred ccceeccCcchhhhh
Confidence 478899999999875
Done!