Query psy2304
Match_columns 85
No_of_seqs 105 out of 408
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:17:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_E Activator 1 40 kDa subu 98.7 2.3E-08 7.8E-13 72.5 4.9 73 8-80 77-154 (354)
2 2gno_A DNA polymerase III, gam 98.1 3.6E-06 1.2E-10 62.6 4.8 54 21-80 49-102 (305)
3 1sxj_C Activator 1 40 kDa subu 98.0 6.2E-06 2.1E-10 60.3 4.8 68 8-80 55-130 (340)
4 3u61_B DNA polymerase accessor 97.8 2.7E-05 9.1E-10 56.0 5.0 66 8-80 57-126 (324)
5 2chq_A Replication factor C sm 97.6 6.6E-05 2.3E-09 52.7 4.4 53 23-80 70-122 (319)
6 1a5t_A Delta prime, HOLB; zinc 97.5 0.0001 3.5E-09 54.3 4.8 52 24-80 76-128 (334)
7 1iqp_A RFCS; clamp loader, ext 97.4 6.4E-05 2.2E-09 53.0 2.3 53 23-80 78-130 (327)
8 1sxj_B Activator 1 37 kDa subu 97.2 0.00048 1.6E-08 48.4 5.4 54 23-80 74-127 (323)
9 1sxj_D Activator 1 41 kDa subu 97.2 0.00032 1.1E-08 50.1 4.4 57 22-80 90-153 (353)
10 2chg_A Replication factor C sm 95.8 0.016 5.6E-07 37.5 5.0 53 22-79 69-121 (226)
11 1jr3_A DNA polymerase III subu 95.3 0.015 5.3E-07 41.6 3.9 50 24-80 90-139 (373)
12 1sxj_A Activator 1 95 kDa subu 95.1 0.012 4.2E-07 45.8 3.0 68 8-77 86-165 (516)
13 1jr3_D DNA polymerase III, del 94.3 0.02 6.7E-07 41.6 2.3 36 40-80 61-97 (343)
14 3pvs_A Replication-associated 93.7 0.014 4.8E-07 45.3 0.4 64 8-79 59-125 (447)
15 2c9o_A RUVB-like 1; hexameric 91.3 0.059 2E-06 41.2 1.1 20 61-80 296-315 (456)
16 2vl7_A XPD; helicase, unknown 89.2 0.087 3E-06 41.3 0.5 24 59-83 174-197 (540)
17 3b6e_A Interferon-induced heli 88.6 0.14 4.9E-06 33.5 1.2 16 60-75 162-177 (216)
18 3crv_A XPD/RAD3 related DNA he 88.1 0.12 4E-06 40.5 0.5 25 59-84 172-196 (551)
19 1njg_A DNA polymerase III subu 87.9 0.38 1.3E-05 31.0 2.8 20 60-79 126-145 (250)
20 1fnn_A CDC6P, cell division co 85.3 0.9 3.1E-05 32.3 3.9 72 8-80 53-145 (389)
21 3llm_A ATP-dependent RNA helic 84.1 0.54 1.9E-05 32.2 2.2 17 60-76 176-192 (235)
22 1rif_A DAR protein, DNA helica 83.9 0.4 1.4E-05 33.6 1.5 16 60-75 225-240 (282)
23 4fcw_A Chaperone protein CLPB; 81.2 0.61 2.1E-05 32.5 1.6 21 60-80 119-139 (311)
24 3uk6_A RUVB-like 2; hexameric 80.2 0.5 1.7E-05 33.9 0.9 19 62-80 191-209 (368)
25 2gxq_A Heat resistant RNA depe 80.2 0.2 6.9E-06 32.8 -1.1 15 60-74 144-158 (207)
26 2fz4_A DNA repair protein RAD2 80.2 0.69 2.3E-05 32.2 1.6 17 60-76 192-208 (237)
27 1t6n_A Probable ATP-dependent 79.4 0.52 1.8E-05 31.4 0.7 16 59-74 157-172 (220)
28 3co5_A Putative two-component 78.9 0.94 3.2E-05 28.9 1.8 19 62-80 77-95 (143)
29 3iuy_A Probable ATP-dependent 78.2 0.6 2.1E-05 31.3 0.7 15 60-74 167-181 (228)
30 1vec_A ATP-dependent RNA helic 77.9 0.26 8.7E-06 32.4 -1.2 15 60-74 146-160 (206)
31 1wp9_A ATP-dependent RNA helic 77.0 0.64 2.2E-05 33.1 0.6 17 59-75 124-140 (494)
32 1g8p_A Magnesium-chelatase 38 76.8 0.92 3.1E-05 32.0 1.4 20 61-80 145-164 (350)
33 3euj_A Chromosome partition pr 76.6 0.83 2.8E-05 36.3 1.2 21 59-79 413-433 (483)
34 3n70_A Transport activator; si 75.8 0.73 2.5E-05 29.4 0.6 18 62-79 78-95 (145)
35 1wrb_A DJVLGB; RNA helicase, D 75.3 0.35 1.2E-05 33.1 -1.1 15 60-74 174-188 (253)
36 3dkp_A Probable ATP-dependent 74.7 0.39 1.3E-05 32.6 -1.0 15 60-74 175-189 (245)
37 2pl3_A Probable ATP-dependent 74.6 0.39 1.3E-05 32.5 -1.1 15 60-74 171-185 (236)
38 1qde_A EIF4A, translation init 74.0 0.4 1.4E-05 32.0 -1.1 15 60-74 155-169 (224)
39 3fe2_A Probable ATP-dependent 73.8 0.42 1.4E-05 32.7 -1.1 16 59-74 175-190 (242)
40 2jlq_A Serine protease subunit 73.7 1.7 5.9E-05 32.9 2.3 16 60-75 110-125 (451)
41 2oxc_A Probable ATP-dependent 73.4 0.4 1.4E-05 32.5 -1.2 14 60-73 166-179 (230)
42 4a2p_A RIG-I, retinoic acid in 73.3 0.89 3.1E-05 33.9 0.6 16 60-75 130-145 (556)
43 1q0u_A Bstdead; DEAD protein, 73.3 0.4 1.4E-05 32.1 -1.2 15 60-74 150-164 (219)
44 3bor_A Human initiation factor 73.1 0.44 1.5E-05 32.6 -1.1 15 60-74 173-187 (237)
45 3tbk_A RIG-I helicase domain; 72.9 0.88 3E-05 33.7 0.5 16 60-75 127-142 (555)
46 3ly5_A ATP-dependent RNA helic 71.9 0.5 1.7E-05 33.1 -1.0 15 60-74 201-215 (262)
47 1hqc_A RUVB; extended AAA-ATPa 71.7 2.1 7.1E-05 29.9 2.2 19 61-79 91-109 (324)
48 2whx_A Serine protease/ntpase/ 71.6 1.9 6.5E-05 34.7 2.2 16 60-75 277-292 (618)
49 2bjv_A PSP operon transcriptio 71.1 1.4 4.9E-05 30.3 1.2 20 61-80 101-120 (265)
50 3ber_A Probable ATP-dependent 70.9 0.54 1.9E-05 32.7 -1.0 15 60-74 186-200 (249)
51 3pfi_A Holliday junction ATP-d 69.2 1.6 5.5E-05 30.9 1.2 21 60-80 106-126 (338)
52 1yks_A Genome polyprotein [con 68.1 2.2 7.6E-05 32.3 1.8 16 59-74 98-113 (440)
53 2v6i_A RNA helicase; membrane, 68.1 2.6 8.9E-05 31.8 2.2 15 60-74 93-107 (431)
54 3fmo_B ATP-dependent RNA helic 68.0 0.61 2.1E-05 33.6 -1.3 15 60-74 235-249 (300)
55 1xti_A Probable ATP-dependent 67.6 1.4 4.9E-05 31.2 0.6 16 59-74 151-166 (391)
56 3pey_A ATP-dependent RNA helic 67.0 0.59 2E-05 33.0 -1.5 15 60-74 145-159 (395)
57 2z83_A Helicase/nucleoside tri 66.7 3.1 0.00011 31.6 2.4 15 60-74 112-126 (459)
58 2j0s_A ATP-dependent RNA helic 66.5 0.71 2.4E-05 33.3 -1.2 15 60-74 179-193 (410)
59 3h1t_A Type I site-specific re 66.4 2.2 7.7E-05 32.9 1.5 16 60-75 302-317 (590)
60 2z0m_A 337AA long hypothetical 65.4 0.66 2.3E-05 32.1 -1.5 15 60-74 129-143 (337)
61 2i4i_A ATP-dependent RNA helic 65.4 1.8 6E-05 31.1 0.7 15 60-74 175-189 (417)
62 1ojl_A Transcriptional regulat 65.3 3.3 0.00011 29.8 2.2 18 62-79 98-115 (304)
63 1hv8_A Putative ATP-dependent 65.1 0.82 2.8E-05 31.9 -1.1 16 59-74 146-161 (367)
64 2fwr_A DNA repair protein RAD2 65.0 1.5 5.2E-05 32.6 0.3 16 60-75 192-207 (472)
65 2oca_A DAR protein, ATP-depend 64.7 2.2 7.5E-05 32.0 1.1 16 60-75 225-240 (510)
66 2ykg_A Probable ATP-dependent 64.7 1.6 5.5E-05 34.0 0.4 16 60-75 136-151 (696)
67 2db3_A ATP-dependent RNA helic 63.9 0.91 3.1E-05 34.0 -1.1 15 60-74 203-217 (434)
68 3te6_A Regulatory protein SIR3 63.7 9.1 0.00031 28.5 4.4 50 23-73 82-145 (318)
69 4a15_A XPD helicase, ATP-depen 63.4 1.1 3.9E-05 35.9 -0.7 23 60-82 204-226 (620)
70 1z63_A Helicase of the SNF2/RA 63.1 2 6.7E-05 32.2 0.6 16 60-75 149-164 (500)
71 3eiq_A Eukaryotic initiation f 62.2 1 3.5E-05 32.2 -1.0 15 60-74 183-197 (414)
72 2r44_A Uncharacterized protein 62.0 2.7 9.2E-05 29.8 1.2 19 62-80 111-129 (331)
73 1s2m_A Putative ATP-dependent 61.9 1 3.6E-05 32.2 -1.1 16 60-75 163-178 (400)
74 3fht_A ATP-dependent RNA helic 61.1 1 3.4E-05 32.2 -1.3 15 60-74 168-182 (412)
75 2orw_A Thymidine kinase; TMTK, 61.1 3.1 0.00011 27.9 1.3 19 60-78 76-94 (184)
76 1jbk_A CLPB protein; beta barr 60.7 4.8 0.00016 24.9 2.1 14 61-74 116-129 (195)
77 3i5x_A ATP-dependent RNA helic 60.3 1.2 4.2E-05 33.8 -1.0 15 60-74 226-240 (563)
78 3vfd_A Spastin; ATPase, microt 59.5 4.6 0.00016 29.7 2.1 59 8-75 157-222 (389)
79 2wv9_A Flavivirin protease NS2 58.6 4.1 0.00014 33.2 1.8 16 59-74 331-346 (673)
80 3pxi_A Negative regulator of g 58.4 3.3 0.00011 33.4 1.2 20 60-79 579-598 (758)
81 1oyw_A RECQ helicase, ATP-depe 58.3 3.1 0.00011 32.3 1.0 16 59-74 138-153 (523)
82 3syl_A Protein CBBX; photosynt 58.0 3.5 0.00012 28.6 1.1 11 62-72 132-142 (309)
83 1r6b_X CLPA protein; AAA+, N-t 57.5 4 0.00014 32.7 1.6 21 60-80 557-577 (758)
84 3b9p_A CG5977-PA, isoform A; A 57.3 4.9 0.00017 27.8 1.8 60 8-76 63-129 (297)
85 1fuu_A Yeast initiation factor 57.3 1.4 4.7E-05 31.2 -1.1 15 60-74 162-176 (394)
86 3sqw_A ATP-dependent RNA helic 57.2 1.5 5.1E-05 34.0 -1.0 15 60-74 175-189 (579)
87 3o8b_A HCV NS3 protease/helica 57.1 5.2 0.00018 33.0 2.2 17 60-76 318-334 (666)
88 2v1x_A ATP-dependent DNA helic 55.8 3.5 0.00012 32.8 0.9 15 60-74 165-179 (591)
89 4a2q_A RIG-I, retinoic acid in 54.9 3 0.0001 33.7 0.5 16 60-75 371-386 (797)
90 1um8_A ATP-dependent CLP prote 54.6 3.3 0.00011 30.1 0.5 16 60-75 137-152 (376)
91 3fmp_B ATP-dependent RNA helic 54.5 1.4 5E-05 32.8 -1.4 15 60-74 235-249 (479)
92 1ofh_A ATP-dependent HSL prote 54.3 2 6.8E-05 29.6 -0.6 17 60-76 116-132 (310)
93 2r2a_A Uncharacterized protein 53.7 3.7 0.00013 28.3 0.7 13 61-73 88-100 (199)
94 2kjq_A DNAA-related protein; s 53.5 6.2 0.00021 25.5 1.7 20 60-79 83-102 (149)
95 2p65_A Hypothetical protein PF 52.9 2.7 9.3E-05 26.2 -0.1 13 61-73 116-128 (187)
96 4gl2_A Interferon-induced heli 52.7 3.7 0.00013 32.0 0.6 15 60-74 136-150 (699)
97 3bos_A Putative DNA replicatio 51.4 3.1 0.00011 27.1 -0.0 17 60-76 104-120 (242)
98 1n0w_B Breast cancer type 2 su 50.9 2.5 8.6E-05 23.0 -0.4 13 5-17 7-19 (35)
99 3fho_A ATP-dependent RNA helic 50.3 2.2 7.6E-05 32.7 -1.0 15 60-74 259-273 (508)
100 1qvr_A CLPB protein; coiled co 48.8 7.4 0.00025 32.0 1.8 20 60-79 660-679 (854)
101 3oiy_A Reverse gyrase helicase 48.0 2.3 7.7E-05 31.0 -1.2 14 60-73 139-152 (414)
102 4a2w_A RIG-I, retinoic acid in 47.6 4.6 0.00016 33.8 0.4 16 60-75 371-386 (936)
103 2zj8_A DNA helicase, putative 47.3 4.9 0.00017 32.0 0.5 15 60-74 138-152 (720)
104 2va8_A SSO2462, SKI2-type heli 46.7 5.2 0.00018 31.7 0.6 14 60-73 145-158 (715)
105 3rc3_A ATP-dependent RNA helic 46.2 6.1 0.00021 32.4 0.9 14 60-73 239-252 (677)
106 1xwi_A SKD1 protein; VPS4B, AA 45.5 15 0.0005 26.5 2.8 58 8-74 54-119 (322)
107 2qz4_A Paraplegin; AAA+, SPG7, 44.6 6.6 0.00022 26.4 0.8 13 61-73 99-111 (262)
108 3k1j_A LON protease, ATP-depen 44.2 7.3 0.00025 30.8 1.1 19 62-80 203-221 (604)
109 2v1u_A Cell division control p 44.1 4.2 0.00014 28.6 -0.3 16 60-75 130-145 (387)
110 3mwy_W Chromo domain-containin 43.5 8.4 0.00029 31.4 1.4 15 60-74 367-381 (800)
111 3f9v_A Minichromosome maintena 43.2 7.2 0.00025 31.1 0.9 19 62-80 393-411 (595)
112 4a4z_A Antiviral helicase SKI2 42.9 11 0.00036 32.1 1.9 15 60-74 147-161 (997)
113 3dmq_A RNA polymerase-associat 42.2 9.6 0.00033 32.1 1.5 15 60-74 273-287 (968)
114 1sf8_A Chaperone protein HTPG; 41.5 18 0.00062 23.8 2.6 19 20-44 65-83 (126)
115 2p6r_A Afuhel308 helicase; pro 41.0 6.1 0.00021 31.4 0.1 15 60-74 138-152 (702)
116 1z3i_X Similar to RAD54-like; 40.6 7.5 0.00026 30.9 0.6 16 59-74 191-206 (644)
117 1w36_D RECD, exodeoxyribonucle 40.1 8.6 0.00029 30.6 0.9 16 60-75 262-277 (608)
118 2r62_A Cell division protease 39.4 7.8 0.00027 26.4 0.5 16 61-76 104-119 (268)
119 3h4m_A Proteasome-activating n 39.3 5.8 0.0002 27.2 -0.2 13 61-73 111-123 (285)
120 1l8q_A Chromosomal replication 38.9 8 0.00027 27.3 0.5 19 61-79 99-119 (324)
121 3upu_A ATP-dependent DNA helic 38.0 12 0.0004 28.3 1.3 21 59-79 127-147 (459)
122 1tf5_A Preprotein translocase 38.0 4.8 0.00016 34.4 -0.9 16 58-73 201-216 (844)
123 1d2n_A N-ethylmaleimide-sensit 37.3 6.5 0.00022 27.1 -0.2 13 60-72 124-136 (272)
124 1gm5_A RECG; helicase, replica 36.7 15 0.00051 30.6 1.8 15 60-74 490-504 (780)
125 3l9o_A ATP-dependent RNA helic 35.7 12 0.0004 32.3 1.1 15 60-74 290-304 (1108)
126 3d8b_A Fidgetin-like protein 1 35.4 8.7 0.0003 28.1 0.2 58 8-74 126-190 (357)
127 1xx6_A Thymidine kinase; NESG, 35.1 12 0.0004 25.6 0.9 16 60-75 81-96 (191)
128 3hws_A ATP-dependent CLP prote 34.9 4.1 0.00014 29.6 -1.6 15 61-75 117-131 (363)
129 2fsf_A Preprotein translocase 34.6 6 0.0002 34.0 -0.9 16 58-73 192-207 (853)
130 2i3b_A HCR-ntpase, human cance 34.6 14 0.00048 25.0 1.2 14 59-72 104-117 (189)
131 2w00_A HSDR, R.ECOR124I; ATP-b 33.5 18 0.00063 31.1 1.9 15 60-74 401-415 (1038)
132 1nkt_A Preprotein translocase 33.5 6.4 0.00022 34.1 -0.9 16 58-73 229-244 (922)
133 3ec2_A DNA replication protein 32.8 27 0.00094 22.2 2.3 19 60-78 100-120 (180)
134 1tue_A Replication protein E1; 32.0 8.7 0.0003 27.7 -0.3 11 60-70 103-113 (212)
135 2xgj_A ATP-dependent RNA helic 31.8 12 0.00041 31.9 0.5 14 60-73 192-205 (1010)
136 3dzd_A Transcriptional regulat 31.2 18 0.00061 26.8 1.4 17 63-79 225-241 (368)
137 2b8t_A Thymidine kinase; deoxy 31.2 17 0.00059 25.5 1.2 16 60-75 89-104 (223)
138 1gku_B Reverse gyrase, TOP-RG; 30.2 6.8 0.00023 33.4 -1.2 15 60-74 175-189 (1054)
139 1ny5_A Transcriptional regulat 29.8 20 0.00069 26.6 1.4 17 63-79 234-250 (387)
140 3nbx_X ATPase RAVA; AAA+ ATPas 28.7 20 0.00067 28.3 1.2 20 61-80 110-129 (500)
141 2z4s_A Chromosomal replication 27.1 16 0.00053 27.8 0.4 20 60-79 194-215 (440)
142 3eie_A Vacuolar protein sortin 26.7 18 0.0006 25.8 0.6 14 61-74 111-124 (322)
143 2eyq_A TRCF, transcription-rep 26.7 25 0.00086 30.3 1.6 17 59-75 724-740 (1151)
144 2zan_A Vacuolar protein sortin 26.7 27 0.00094 26.4 1.7 58 8-74 176-241 (444)
145 2qp9_X Vacuolar protein sortin 26.6 18 0.00061 26.5 0.6 15 61-75 144-158 (355)
146 3m6a_A ATP-dependent protease 26.6 23 0.00078 27.7 1.3 15 63-77 178-192 (543)
147 3cf0_A Transitional endoplasmi 25.2 15 0.00052 25.9 0.0 17 61-77 109-125 (301)
148 2xau_A PRE-mRNA-splicing facto 24.1 27 0.00093 28.7 1.3 12 60-71 208-219 (773)
149 2ipc_A Preprotein translocase 24.1 11 0.00039 32.9 -0.9 14 60-73 202-215 (997)
150 3p6j_A De novo designed beta-t 23.9 48 0.0016 22.1 2.3 23 8-30 26-49 (142)
151 3t15_A Ribulose bisphosphate c 23.4 24 0.00082 25.0 0.8 14 61-74 100-113 (293)
152 4ddu_A Reverse gyrase; topoiso 23.1 12 0.00041 32.2 -1.0 15 60-74 196-210 (1104)
153 2jys_A Protease/reverse transc 22.8 66 0.0023 21.1 2.8 24 9-32 66-90 (107)
154 1in4_A RUVB, holliday junction 22.7 29 0.001 24.9 1.2 20 60-79 102-121 (334)
155 3o1f_A ATP-dependent CLP prote 22.1 44 0.0015 20.5 1.7 11 59-69 1-11 (81)
156 2j9r_A Thymidine kinase; TK1, 21.7 25 0.00086 25.0 0.6 16 60-75 101-116 (214)
157 3plu_A Ubiquitin-like modifier 21.5 65 0.0022 20.2 2.5 17 7-32 27-43 (93)
158 3f8t_A Predicted ATPase involv 21.4 47 0.0016 26.9 2.2 19 62-80 302-320 (506)
159 1uh6_A Ubiquitin-like 5; beta- 21.0 64 0.0022 20.3 2.4 9 23-31 41-49 (100)
160 3e1s_A Exodeoxyribonuclease V, 20.4 35 0.0012 27.1 1.2 18 60-77 279-296 (574)
161 3goe_A DNA repair protein RAD6 20.0 49 0.0017 20.8 1.6 49 20-79 19-67 (82)
No 1
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=2.3e-08 Score=72.49 Aligned_cols=73 Identities=33% Similarity=0.544 Sum_probs=46.9
Q ss_pred CCCCCeEEEEEccccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCC----CC-CCceeEEEEcCCCCCCHHHHhcc
Q psy2304 8 TPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDP----NG-QRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~----~~-~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.|.+....+..+.+++|+|+++++.|..++..+++.++++++..+++. ++ ..++|++||||+|.|+.++|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L 154 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAAL 154 (354)
T ss_dssp ---------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHH
T ss_pred ccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHH
Confidence 344445566667788899999999988777789999999998876631 11 23689999999999999999864
No 2
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=3.6e-06 Score=62.61 Aligned_cols=54 Identities=9% Similarity=-0.088 Sum_probs=40.1
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...++|+||++. ......||++++.+ +..|.. + ++|||||||||.||.+||.|.
T Consensus 49 ~~d~~~l~~~~~-~~~id~ir~li~~~-~~~p~~--~--~~kvviIdead~lt~~a~naL 102 (305)
T 2gno_A 49 ASDVLEIDPEGE-NIGIDDIRTIKDFL-NYSPEL--Y--TRKYVIVHDCERMTQQAANAF 102 (305)
T ss_dssp TTTEEEECCSSS-CBCHHHHHHHHHHH-TSCCSS--S--SSEEEEETTGGGBCHHHHHHT
T ss_pred CCCEEEEcCCcC-CCCHHHHHHHHHHH-hhcccc--C--CceEEEeccHHHhCHHHHHHH
Confidence 446799999852 23446799977665 444542 1 599999999999999999874
No 3
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=6.2e-06 Score=60.31 Aligned_cols=68 Identities=28% Similarity=0.246 Sum_probs=50.1
Q ss_pred CCCCCeEEEEEcc--------ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTTA--------SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~~--------Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
.++|||.-+..+. ...++|+|++|..+ ...+|+.|++++++..... ..+|++||||+|.|+.++|.|
T Consensus 55 ~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~--~~~ir~~i~~~~~~~~~~~---~~~~viiiDe~~~l~~~~~~~ 129 (340)
T 1sxj_C 55 PGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG--IDVVRNQIKDFASTRQIFS---KGFKLIILDEADAMTNAAQNA 129 (340)
T ss_dssp SSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS--HHHHHTHHHHHHHBCCSSS---CSCEEEEETTGGGSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc--HHHHHHHHHHHHhhcccCC---CCceEEEEeCCCCCCHHHHHH
Confidence 4566664444432 34689999999743 4789999999998654321 148999999999999999986
Q ss_pred c
Q psy2304 80 S 80 (85)
Q Consensus 80 ~ 80 (85)
.
T Consensus 130 L 130 (340)
T 1sxj_C 130 L 130 (340)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.79 E-value=2.7e-05 Score=56.04 Aligned_cols=66 Identities=17% Similarity=0.028 Sum_probs=50.4
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCC-HHHHhcc
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVG-NPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT-~~AQ~a~ 80 (85)
+++|||.-+..+. ...++|+|+++.| ...+++.+++++++.+... ..+++||||+|.|+ .++|.+.
T Consensus 57 ~G~GKT~la~~la~~l~~~~~~i~~~~~~---~~~i~~~~~~~~~~~~~~~----~~~vliiDEi~~l~~~~~~~~L 126 (324)
T 3u61_B 57 PGTGKTTVAKALCHDVNADMMFVNGSDCK---IDFVRGPLTNFASAASFDG----RQKVIVIDEFDRSGLAESQRHL 126 (324)
T ss_dssp TTSSHHHHHHHHHHHTTEEEEEEETTTCC---HHHHHTHHHHHHHBCCCSS----CEEEEEEESCCCGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEcccccC---HHHHHHHHHHHHhhcccCC----CCeEEEEECCcccCcHHHHHHH
Confidence 4567765444442 3457999999976 4789999999999866532 68999999999999 8888753
No 5
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.59 E-value=6.6e-05 Score=52.73 Aligned_cols=53 Identities=26% Similarity=0.204 Sum_probs=42.6
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++++|+++..+ ...+++.++++++..+... .+.+++||||+|.|+.++|.+.
T Consensus 70 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~vliiDe~~~l~~~~~~~L 122 (319)
T 2chq_A 70 NFIEMNASDERG--IDVVRHKIKEFARTAPIGG---APFKIIFLDEADALTADAQAAL 122 (319)
T ss_dssp HCEEEETTSTTC--TTTSSHHHHHHHHSCCSSS---CCCEEEEEETGGGSCHHHHHTT
T ss_pred CeEEEeCccccC--hHHHHHHHHHHHhcCCCCC---CCceEEEEeCCCcCCHHHHHHH
Confidence 478999998744 3678999999996665431 2589999999999999999875
No 6
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.52 E-value=0.0001 Score=54.30 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=37.3
Q ss_pred eeEeCCCCCC-cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAG-IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g-~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++++|.+.+ ......||++++.+... +.. .++||+||||||.|+.+||.|.
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~l~~~~~~~-~~~----~~~kvviIdead~l~~~a~naL 128 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVREVTEKLNEH-ARL----GGAKVVWVTDAALLTDAAANAL 128 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHHHHHHTTSC-CTT----SSCEEEEESCGGGBCHHHHHHH
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHhhc-ccc----CCcEEEEECchhhcCHHHHHHH
Confidence 5788886321 23346789888776654 321 2699999999999999999874
No 7
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.40 E-value=6.4e-05 Score=52.97 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=42.0
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++++||+|... ...+++.++++++..++.. .+.+++||||+|.|+.++|.+.
T Consensus 78 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~vliiDe~~~l~~~~~~~L 130 (327)
T 1iqp_A 78 NFLELNASDERG--INVIREKVKEFARTKPIGG---ASFKIIFLDEADALTQDAQQAL 130 (327)
T ss_dssp HEEEEETTCHHH--HHTTHHHHHHHHHSCCGGG---CSCEEEEEETGGGSCHHHHHHH
T ss_pred ceEEeeccccCc--hHHHHHHHHHHHhhCCcCC---CCCeEEEEeCCCcCCHHHHHHH
Confidence 479999998633 3678899999997766531 2589999999999999998764
No 8
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=0.00048 Score=48.36 Aligned_cols=54 Identities=22% Similarity=0.092 Sum_probs=40.8
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+++|++|... ...+++.++++++...... ..+.++|||||+|.|+.++|.+.
T Consensus 74 ~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~viiiDe~~~l~~~~~~~L 127 (323)
T 1sxj_B 74 GVLELNASDDRG--IDVVRNQIKHFAQKKLHLP--PGKHKIVILDEADSMTAGAQQAL 127 (323)
T ss_dssp HEEEECTTSCCS--HHHHHTHHHHHHHBCCCCC--TTCCEEEEEESGGGSCHHHHHTT
T ss_pred CEEEecCccccC--hHHHHHHHHHHHhccccCC--CCCceEEEEECcccCCHHHHHHH
Confidence 479999998743 4788999999885433211 12489999999999999998764
No 9
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=0.00032 Score=50.14 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=42.4
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCC-------CCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDP-------NGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~-------~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+++||+|... ...+++.++.++....... ...+.+++++|||+|.|+..+|.+.
T Consensus 90 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~L 153 (353)
T 1sxj_D 90 SRILELNASDERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSAL 153 (353)
T ss_dssp TSEEEECSSSCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHH
T ss_pred cceEEEccccccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHH
Confidence 3689999999633 3688999999887643211 1224689999999999999998763
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.81 E-value=0.016 Score=37.47 Aligned_cols=53 Identities=26% Similarity=0.235 Sum_probs=39.7
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
...+++++++... ...+++.++.+....... ....+++||||+|.|+.+.|.+
T Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~vliiDe~~~l~~~~~~~ 121 (226)
T 2chg_A 69 DNFIEMNASDERG--IDVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAA 121 (226)
T ss_dssp GGEEEEETTCTTC--HHHHHHHHHHHHTSCCST---TCSCEEEEEETGGGSCHHHHHH
T ss_pred cceEEeccccccC--hHHHHHHHHHHhcccCCC---ccCceEEEEeChhhcCHHHHHH
Confidence 3578999987643 367788888888765432 1257899999999999987764
No 11
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.34 E-value=0.015 Score=41.62 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=33.8
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+++++++... ..-+++++..+... +. ....++|||||+|.|+.++|.+.
T Consensus 90 ~~~~~~~~~~~--~~~~~~l~~~~~~~-~~----~~~~~vliiDe~~~l~~~~~~~L 139 (373)
T 1jr3_A 90 LIEIDAASRTK--VEDTRDLLDNVQYA-PA----RGRFKVYLIDEVHMLSRHSFNAL 139 (373)
T ss_dssp CEEEETTCSCC--SSCHHHHHHHTTSC-CS----SSSSEEEEEECGGGSCHHHHHHH
T ss_pred eEEecccccCC--HHHHHHHHHHHhhc-cc----cCCeEEEEEECcchhcHHHHHHH
Confidence 36777765322 24577777765433 22 12589999999999999988764
No 12
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.012 Score=45.80 Aligned_cols=68 Identities=10% Similarity=-0.097 Sum_probs=45.8
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCC---------CCCceeEEEEcCCCCCCHH
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPN---------GQRDFKGKFVARGPLVGNP 75 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~---------~~~~fKvvvLdEAD~LT~~ 75 (85)
+++|||.-+..+. .-.++|+|+++.+.. .++++.++++.....+... .....+|+||||+|.|+.+
T Consensus 86 pGtGKTtla~~la~~l~~~~i~in~s~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~ 163 (516)
T 1sxj_A 86 PGIGKTTAAHLVAQELGYDILEQNASDVRSK--TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG 163 (516)
T ss_dssp TTSSHHHHHHHHHHHTTCEEEEECTTSCCCH--HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCcchH--HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh
Confidence 4667765444442 234789999998543 6778888877665544210 1235789999999999987
Q ss_pred HH
Q psy2304 76 WH 77 (85)
Q Consensus 76 AQ 77 (85)
+|
T Consensus 164 ~~ 165 (516)
T 1sxj_A 164 DR 165 (516)
T ss_dssp ST
T ss_pred hH
Confidence 66
No 13
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.34 E-value=0.02 Score=41.55 Aligned_cols=36 Identities=6% Similarity=-0.087 Sum_probs=27.4
Q ss_pred hHHHHHHHhhcCcCCCCCCCceeEEEEcCCCC-CCHHHHhcc
Q psy2304 40 VMELIKNVAQTNQLDPNGQRDFKGKFVARGPL-VGNPWHRAS 80 (85)
Q Consensus 40 Vq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~-LT~~AQ~a~ 80 (85)
+++++ +.+++.|+.+ ++|||||||+|. |+.++|.|.
T Consensus 61 ~~~l~-~~~~~~plf~----~~kvvii~~~~~kl~~~~~~aL 97 (343)
T 1jr3_D 61 WNAIF-SLCQAMSLFA----SRQTLLLLLPENGPNAAINEQL 97 (343)
T ss_dssp HHHHH-HHHHHHHHCC----SCEEEEEECCSSCCCTTHHHHH
T ss_pred HHHHH-HHhcCcCCcc----CCeEEEEECCCCCCChHHHHHH
Confidence 35544 4467767653 599999999999 999998874
No 14
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.65 E-value=0.014 Score=45.31 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=37.3
Q ss_pred CCCCCeEEEEEc---cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTT---ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~---~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
+++|||.-...+ ....++++|++..|. .-+++.++........ + ..+++||||+|.|+...|.+
T Consensus 59 pGtGKTtlAr~ia~~~~~~f~~l~a~~~~~---~~ir~~~~~a~~~~~~---~--~~~iLfIDEI~~l~~~~q~~ 125 (447)
T 3pvs_A 59 PGTGKTTLAEVIARYANADVERISAVTSGV---KEIREAIERARQNRNA---G--RRTILFVDEVHRFNKSQQDA 125 (447)
T ss_dssp TTSSHHHHHHHHHHHTTCEEEEEETTTCCH---HHHHHHHHHHHHHHHT---T--CCEEEEEETTTCC------C
T ss_pred CCCcHHHHHHHHHHHhCCCeEEEEeccCCH---HHHHHHHHHHHHhhhc---C--CCcEEEEeChhhhCHHHHHH
Confidence 566776433333 234568899988765 3466666664433221 1 47899999999999988876
No 15
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.27 E-value=0.059 Score=41.20 Aligned_cols=20 Identities=10% Similarity=-0.137 Sum_probs=18.2
Q ss_pred eeEEEEcCCCCCCHHHHhcc
Q psy2304 61 FKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.||+||||||.|+.+||.|.
T Consensus 296 ~~VliIDEa~~l~~~a~~aL 315 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIECFTYL 315 (456)
T ss_dssp ECEEEEESGGGCBHHHHHHH
T ss_pred ceEEEEechhhcCHHHHHHH
Confidence 48999999999999999875
No 16
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=89.19 E-value=0.087 Score=41.27 Aligned_cols=24 Identities=0% Similarity=-0.284 Sum_probs=18.9
Q ss_pred CceeEEEEcCCCCCCHHHHhccccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSLQ 83 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~~ 83 (85)
+.+.++|+||||+| .+|..+.|..
T Consensus 174 ~~~~~vIiDEAHnl-~~a~~~~s~~ 197 (540)
T 2vl7_A 174 LEDYLIVIDEAHNL-LEADKWFTRK 197 (540)
T ss_dssp GGGEEEEETTGGGG-GGGGGGGCEE
T ss_pred cCCCEEEEEccccH-HHHHHHhccc
Confidence 46899999999999 6676665543
No 17
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=88.64 E-value=0.14 Score=33.49 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=9.4
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|++||+||||.|...
T Consensus 162 ~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 162 DFSLIIIDECHHTNKE 177 (216)
T ss_dssp GCSEEEETTC------
T ss_pred cccEEEEECchhhccC
Confidence 6899999999999654
No 18
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=88.12 E-value=0.12 Score=40.50 Aligned_cols=25 Identities=0% Similarity=-0.166 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
+...++||||||+|-. |..+.|..+
T Consensus 172 ~~~~~vIiDEAHnl~d-~~~~~s~~l 196 (551)
T 3crv_A 172 LREYMIVIDEAHNLDK-VNELEERSL 196 (551)
T ss_dssp STTEEEEETTGGGGGG-GGGGGCEEE
T ss_pred cCCeEEEEecccchHH-HHHhhceec
Confidence 3678999999999999 988877643
No 19
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.88 E-value=0.38 Score=31.01 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=17.2
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
..+++||||+|.|+.+++.+
T Consensus 126 ~~~vlviDe~~~l~~~~~~~ 145 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNA 145 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHH
T ss_pred CceEEEEECcccccHHHHHH
Confidence 46899999999999887764
No 20
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.31 E-value=0.9 Score=32.29 Aligned_cols=72 Identities=4% Similarity=-0.123 Sum_probs=41.8
Q ss_pred CCCCCeEEEEEcc-------ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCC--------------CCCceeEEEE
Q psy2304 8 TPSKKKIDIMTTA-------SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPN--------------GQRDFKGKFV 66 (85)
Q Consensus 8 t~s~k~~eI~~~~-------Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~--------------~~~~fKvvvL 66 (85)
+++|||.-+..+. .-..+++|+++... ...+++.+++.+....+.... .....+++||
T Consensus 53 ~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlil 131 (389)
T 1fnn_A 53 PGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVL 131 (389)
T ss_dssp TTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 4667765443332 23578899876532 235666666655332111000 0124679999
Q ss_pred cCCCCCCHHHHhcc
Q psy2304 67 ARGPLVGNPWHRAS 80 (85)
Q Consensus 67 dEAD~LT~~AQ~a~ 80 (85)
||+|.|..+.|.+.
T Consensus 132 DE~~~l~~~~~~~L 145 (389)
T 1fnn_A 132 DDAFNLAPDILSTF 145 (389)
T ss_dssp ETGGGSCHHHHHHH
T ss_pred ECccccchHHHHHH
Confidence 99999988887653
No 21
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=84.10 E-value=0.54 Score=32.20 Aligned_cols=17 Identities=6% Similarity=-0.288 Sum_probs=13.9
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.+++|||||||.++-+.
T Consensus 176 ~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 176 GISHVIVDEIHERDINT 192 (235)
T ss_dssp TCCEEEECCTTSCCHHH
T ss_pred CCcEEEEECCccCCcch
Confidence 58999999999975443
No 22
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=83.87 E-value=0.4 Score=33.59 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=14.6
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|++||+||||.|...
T Consensus 225 ~~~~vIiDEaH~~~~~ 240 (282)
T 1rif_A 225 QFGMMMNDECHLATGK 240 (282)
T ss_dssp GEEEEEEETGGGCCHH
T ss_pred hCCEEEEECCccCCcc
Confidence 6899999999999876
No 23
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.16 E-value=0.61 Score=32.51 Aligned_cols=21 Identities=0% Similarity=-0.235 Sum_probs=18.2
Q ss_pred ceeEEEEcCCCCCCHHHHhcc
Q psy2304 60 DFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+..+++|||+|.|+.++|.+.
T Consensus 119 ~~~vl~lDEi~~l~~~~~~~L 139 (311)
T 4fcw_A 119 PYSVILFDAIEKAHPDVFNIL 139 (311)
T ss_dssp SSEEEEEETGGGSCHHHHHHH
T ss_pred CCeEEEEeChhhcCHHHHHHH
Confidence 457999999999999998763
No 24
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.24 E-value=0.5 Score=33.86 Aligned_cols=19 Identities=5% Similarity=-0.125 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
.|+||||+|.|+.++|.+.
T Consensus 191 ~vl~IDEi~~l~~~~~~~L 209 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFL 209 (368)
T ss_dssp CEEEEESGGGSBHHHHHHH
T ss_pred ceEEEhhccccChHHHHHH
Confidence 5999999999999998753
No 25
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.20 E-value=0.2 Score=32.84 Aligned_cols=15 Identities=0% Similarity=-0.121 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 144 ~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 144 RVEVAVLDEADEMLS 158 (207)
T ss_dssp TCSEEEEESHHHHHH
T ss_pred hceEEEEEChhHhhc
Confidence 689999999998743
No 26
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=80.17 E-value=0.69 Score=32.19 Aligned_cols=17 Identities=6% Similarity=-0.197 Sum_probs=14.4
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.|++|||||||.|....
T Consensus 192 ~~~llIiDEaH~l~~~~ 208 (237)
T 2fz4_A 192 RFMLLIFDEVHHLPAES 208 (237)
T ss_dssp TCSEEEEECSSCCCTTT
T ss_pred cCCEEEEECCccCCChH
Confidence 58999999999997643
No 27
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=79.42 E-value=0.52 Score=31.36 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=13.6
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
..++++|+||||.|..
T Consensus 157 ~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 157 KHIKHFILDECDKMLE 172 (220)
T ss_dssp TTCCEEEEESHHHHHS
T ss_pred ccCCEEEEcCHHHHhc
Confidence 3699999999998854
No 28
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.93 E-value=0.94 Score=28.87 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=16.6
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
.+++|||+|.|+.+.|.+.
T Consensus 77 ~~l~lDei~~l~~~~q~~L 95 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGI 95 (143)
T ss_dssp SEEEEEECTTCCHHHHHHH
T ss_pred CeEEEeChHHCCHHHHHHH
Confidence 4799999999999998763
No 29
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.15 E-value=0.6 Score=31.32 Aligned_cols=15 Identities=0% Similarity=-0.088 Sum_probs=13.1
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 167 ~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 167 SITYLVIDEADKMLD 181 (228)
T ss_dssp TCCEEEECCHHHHHH
T ss_pred cceEEEEECHHHHhc
Confidence 699999999998764
No 30
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=77.88 E-value=0.26 Score=32.41 Aligned_cols=15 Identities=0% Similarity=-0.122 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++++|+||||.|..
T Consensus 146 ~~~~lViDEah~~~~ 160 (206)
T 1vec_A 146 HVQMIVLDEADKLLS 160 (206)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCEEEEEChHHhHh
Confidence 689999999997754
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.00 E-value=0.64 Score=33.11 Aligned_cols=17 Identities=6% Similarity=-0.142 Sum_probs=14.4
Q ss_pred CceeEEEEcCCCCCCHH
Q psy2304 59 RDFKGKFVARGPLVGNP 75 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~ 75 (85)
..|.+||+||||.+.++
T Consensus 124 ~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 124 EDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp TSCSEEEEETGGGCSTT
T ss_pred hhceEEEEECCcccCCC
Confidence 36899999999999753
No 32
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.84 E-value=0.92 Score=32.03 Aligned_cols=20 Identities=5% Similarity=-0.102 Sum_probs=17.3
Q ss_pred eeEEEEcCCCCCCHHHHhcc
Q psy2304 61 FKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+++|||+|.|+.++|.+.
T Consensus 145 ~~vl~iDEi~~l~~~~~~~L 164 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLL 164 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHH
T ss_pred CCEEEEeChhhCCHHHHHHH
Confidence 46999999999999998753
No 33
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=76.60 E-value=0.83 Score=36.32 Aligned_cols=21 Identities=5% Similarity=-0.066 Sum_probs=18.2
Q ss_pred CceeEEEEcCCCCCCHHHHhc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a 79 (85)
++|++||||||++|..+..++
T Consensus 413 ~~~rlvvlDEA~kmD~~~~~~ 433 (483)
T 3euj_A 413 LPCRLLFLDQAARLDAMSINT 433 (483)
T ss_dssp CCCCEEEESSGGGSCHHHHHH
T ss_pred CceeEEEEeccccCCHHHHHH
Confidence 489999999999999887654
No 34
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.80 E-value=0.73 Score=29.39 Aligned_cols=18 Identities=0% Similarity=-0.151 Sum_probs=15.9
Q ss_pred eEEEEcCCCCCCHHHHhc
Q psy2304 62 KGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a 79 (85)
.+++|||+|.|+.+.|.+
T Consensus 78 g~l~ldei~~l~~~~q~~ 95 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYH 95 (145)
T ss_dssp SCEEEECGGGSCHHHHHH
T ss_pred cEEEEcChHHCCHHHHHH
Confidence 379999999999999875
No 35
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.31 E-value=0.35 Score=33.08 Aligned_cols=15 Identities=7% Similarity=-0.201 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++++|+||||.|..
T Consensus 174 ~~~~lViDEah~~~~ 188 (253)
T 1wrb_A 174 FCKYIVLDEADRMLD 188 (253)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred hCCEEEEeCHHHHHh
Confidence 589999999998753
No 36
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=74.72 E-value=0.39 Score=32.65 Aligned_cols=15 Identities=7% Similarity=-0.122 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 175 ~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 175 SVEWLVVDESDKLFE 189 (245)
T ss_dssp TCCEEEESSHHHHHH
T ss_pred cCcEEEEeChHHhcc
Confidence 589999999999865
No 37
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=74.55 E-value=0.39 Score=32.46 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 171 ~~~~lViDEah~~~~ 185 (236)
T 2pl3_A 171 DLQMLVLDEADRILD 185 (236)
T ss_dssp TCCEEEETTHHHHHH
T ss_pred cccEEEEeChHHHhc
Confidence 689999999998753
No 38
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.96 E-value=0.4 Score=31.96 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 155 ~~~~iViDEah~~~~ 169 (224)
T 1qde_A 155 KIKMFILDEADEMLS 169 (224)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred hCcEEEEcChhHHhh
Confidence 589999999998754
No 39
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=73.75 E-value=0.42 Score=32.68 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=13.5
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
..++++|+||||.|..
T Consensus 175 ~~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLD 190 (242)
T ss_dssp TTCCEEEETTHHHHHH
T ss_pred ccccEEEEeCHHHHhh
Confidence 3689999999998764
No 40
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=73.70 E-value=1.7 Score=32.88 Aligned_cols=16 Identities=0% Similarity=0.021 Sum_probs=13.5
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.+++|||||||.+...
T Consensus 110 ~~~~iViDEah~~~~~ 125 (451)
T 2jlq_A 110 NYNLIVMDEAHFTDPC 125 (451)
T ss_dssp CCSEEEEETTTCCSHH
T ss_pred CCCEEEEeCCccCCcc
Confidence 6899999999998543
No 41
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=73.37 E-value=0.4 Score=32.52 Aligned_cols=14 Identities=0% Similarity=-0.128 Sum_probs=12.3
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
.++++|+||||.|.
T Consensus 166 ~~~~lViDEah~~~ 179 (230)
T 2oxc_A 166 SIRLFILDEADKLL 179 (230)
T ss_dssp GCCEEEESSHHHHH
T ss_pred cCCEEEeCCchHhh
Confidence 58899999999874
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=73.33 E-value=0.89 Score=33.86 Aligned_cols=16 Identities=6% Similarity=-0.184 Sum_probs=13.8
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.+++||+||||.|...
T Consensus 130 ~~~~vViDEah~~~~~ 145 (556)
T 4a2p_A 130 IFTLMIFDECHNTTGN 145 (556)
T ss_dssp TCSEEEEETGGGCSTT
T ss_pred cCCEEEEECCcccCCc
Confidence 5899999999999754
No 43
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=73.27 E-value=0.4 Score=32.09 Aligned_cols=15 Identities=13% Similarity=-0.031 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++++|+||||.|..
T Consensus 150 ~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 150 TAHILVVDEADLMLD 164 (219)
T ss_dssp GCCEEEECSHHHHHH
T ss_pred cceEEEEcCchHHhh
Confidence 689999999998754
No 44
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=73.12 E-value=0.44 Score=32.56 Aligned_cols=15 Identities=7% Similarity=-0.234 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 173 ~~~~lViDEah~~~~ 187 (237)
T 3bor_A 173 WIKMFVLDEADEMLS 187 (237)
T ss_dssp TCCEEEEESHHHHHH
T ss_pred cCcEEEECCchHhhc
Confidence 589999999998753
No 45
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=72.90 E-value=0.88 Score=33.71 Aligned_cols=16 Identities=6% Similarity=-0.126 Sum_probs=14.0
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.+++||+||||.|...
T Consensus 127 ~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 127 VFTLMIFDECHNTSKN 142 (555)
T ss_dssp GCSEEEETTGGGCSTT
T ss_pred cCCEEEEECccccCCc
Confidence 5899999999999764
No 46
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.89 E-value=0.5 Score=33.07 Aligned_cols=15 Identities=0% Similarity=0.078 Sum_probs=13.1
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.|..
T Consensus 201 ~l~~lViDEah~l~~ 215 (262)
T 3ly5_A 201 NLQCLVIDEADRILD 215 (262)
T ss_dssp TCCEEEECSHHHHHH
T ss_pred cCCEEEEcChHHHhh
Confidence 689999999998765
No 47
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=71.66 E-value=2.1 Score=29.91 Aligned_cols=19 Identities=5% Similarity=-0.176 Sum_probs=16.6
Q ss_pred eeEEEEcCCCCCCHHHHhc
Q psy2304 61 FKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a 79 (85)
-.++||||+|.|..+.|.+
T Consensus 91 ~~~l~lDEi~~l~~~~~~~ 109 (324)
T 1hqc_A 91 GDILFIDEIHRLSRQAEEH 109 (324)
T ss_dssp TCEEEETTTTSCCHHHHHH
T ss_pred CCEEEEECCcccccchHHH
Confidence 4699999999999988864
No 48
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=71.56 E-value=1.9 Score=34.65 Aligned_cols=16 Identities=0% Similarity=0.021 Sum_probs=13.8
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.+++|||||||.|...
T Consensus 277 ~~~~iViDEah~~~~~ 292 (618)
T 2whx_A 277 NYNLIVMDEAHFTDPC 292 (618)
T ss_dssp CCSEEEEESTTCCSHH
T ss_pred CCeEEEEECCCCCCcc
Confidence 6899999999999544
No 49
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.06 E-value=1.4 Score=30.28 Aligned_cols=20 Identities=5% Similarity=-0.257 Sum_probs=17.2
Q ss_pred eeEEEEcCCCCCCHHHHhcc
Q psy2304 61 FKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+++|||+|.|+.+.|.+.
T Consensus 101 ~~~l~lDEi~~l~~~~q~~L 120 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKL 120 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHH
T ss_pred CcEEEEechHhcCHHHHHHH
Confidence 36999999999999998753
No 50
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=70.94 E-value=0.54 Score=32.65 Aligned_cols=15 Identities=13% Similarity=0.018 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 186 ~~~~lViDEah~l~~ 200 (249)
T 3ber_A 186 ALKYLVMDEADRILN 200 (249)
T ss_dssp TCCEEEECSHHHHHH
T ss_pred ccCEEEEcChhhhhc
Confidence 589999999997754
No 51
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=69.15 E-value=1.6 Score=30.92 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=17.7
Q ss_pred ceeEEEEcCCCCCCHHHHhcc
Q psy2304 60 DFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+++|||+|.|..++|.+.
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~L 126 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVL 126 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHH
T ss_pred CCCEEEEechhhcCHHHHHHH
Confidence 357999999999999988653
No 52
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=68.06 E-value=2.2 Score=32.30 Aligned_cols=16 Identities=0% Similarity=0.100 Sum_probs=13.4
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
..+++|||||||.|..
T Consensus 98 ~~l~~vViDEah~~~~ 113 (440)
T 1yks_A 98 VNWEVIIMDEAHFLDP 113 (440)
T ss_dssp CCCSEEEETTTTCCSH
T ss_pred cCccEEEEECccccCc
Confidence 3689999999999943
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=68.05 E-value=2.6 Score=31.77 Aligned_cols=15 Identities=0% Similarity=0.151 Sum_probs=13.4
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.+..
T Consensus 93 ~l~~vViDEaH~~~~ 107 (431)
T 2v6i_A 93 NYNLYIMDEAHFLDP 107 (431)
T ss_dssp CCSEEEEESTTCCSH
T ss_pred CCCEEEEeCCccCCc
Confidence 689999999999964
No 54
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.02 E-value=0.61 Score=33.58 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++++||||||.|..
T Consensus 235 ~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 235 KIKVFVLDEADVMIA 249 (300)
T ss_dssp GCSEEEETTHHHHHH
T ss_pred hceEEEEeCHHHHhh
Confidence 589999999998764
No 55
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=67.61 E-value=1.4 Score=31.18 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=13.8
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
..+++||+||||.|..
T Consensus 151 ~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 151 KHIKHFILDECDKMLE 166 (391)
T ss_dssp TTCSEEEECSHHHHTS
T ss_pred cccCEEEEeCHHHHhh
Confidence 3699999999998865
No 56
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=66.95 E-value=0.59 Score=32.96 Aligned_cols=15 Identities=7% Similarity=-0.106 Sum_probs=13.2
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 145 ~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 145 KIKIFVLDEADNMLD 159 (395)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred cCCEEEEEChhhhcC
Confidence 589999999998765
No 57
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=66.68 E-value=3.1 Score=31.60 Aligned_cols=15 Identities=0% Similarity=0.065 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.+..
T Consensus 112 ~~~~iViDEaH~~~~ 126 (459)
T 2z83_A 112 NYNLFVMDEAHFTDP 126 (459)
T ss_dssp CCSEEEESSTTCCSH
T ss_pred CCcEEEEECCccCCc
Confidence 689999999998643
No 58
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=66.53 E-value=0.71 Score=33.27 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 179 ~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 179 AIKMLVLDEADEMLN 193 (410)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred heeEEEEccHHHHHh
Confidence 589999999998754
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=66.39 E-value=2.2 Score=32.89 Aligned_cols=16 Identities=6% Similarity=-0.178 Sum_probs=10.2
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|.+||+||||.+...
T Consensus 302 ~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 302 FFDLIIIDECHRGSAR 317 (590)
T ss_dssp SCSEEEESCCC-----
T ss_pred ccCEEEEECCcccccc
Confidence 5899999999999753
No 60
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=65.37 E-value=0.66 Score=32.05 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.|++||+||||.|..
T Consensus 129 ~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 129 SFEIVIIDEADLMFE 143 (337)
T ss_dssp GCSEEEEESHHHHHH
T ss_pred hCcEEEEEChHHhhc
Confidence 689999999998754
No 61
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=65.36 E-value=1.8 Score=31.08 Aligned_cols=15 Identities=7% Similarity=-0.201 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 175 ~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 175 FCKYLVLDEADRMLD 189 (417)
T ss_dssp TCCEEEESSHHHHHH
T ss_pred hCcEEEEEChhHhhc
Confidence 689999999998754
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=65.26 E-value=3.3 Score=29.82 Aligned_cols=18 Identities=6% Similarity=-0.138 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCCHHHHhc
Q psy2304 62 KGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a 79 (85)
.+++|||+|.|+.+.|..
T Consensus 98 g~L~LDEi~~l~~~~q~~ 115 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVR 115 (304)
T ss_dssp SEEEEESCTTCCHHHHHH
T ss_pred CEEEEeccccCCHHHHHH
Confidence 489999999999998864
No 63
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=65.13 E-value=0.82 Score=31.87 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=13.2
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
..+++||+||||.+.+
T Consensus 146 ~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 146 KNVKYFILDEADEMLN 161 (367)
T ss_dssp TSCCEEEEETHHHHHT
T ss_pred ccCCEEEEeCchHhhh
Confidence 3689999999998753
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=65.04 E-value=1.5 Score=32.56 Aligned_cols=16 Identities=6% Similarity=-0.141 Sum_probs=13.8
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|.+||+||||.+.+.
T Consensus 192 ~~~liIvDEaH~~~~~ 207 (472)
T 2fwr_A 192 RFMLLIFDEVHHLPAE 207 (472)
T ss_dssp TCSEEEEETGGGTTST
T ss_pred CCCEEEEECCcCCCCh
Confidence 5899999999998754
No 65
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=64.68 E-value=2.2 Score=32.01 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=14.3
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|.+||+||||.+...
T Consensus 225 ~~~liIiDE~H~~~~~ 240 (510)
T 2oca_A 225 QFGMMMNDECHLATGK 240 (510)
T ss_dssp GEEEEEEETGGGCCHH
T ss_pred cCCEEEEECCcCCCcc
Confidence 5899999999999864
No 66
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=64.66 E-value=1.6 Score=34.02 Aligned_cols=16 Identities=6% Similarity=-0.130 Sum_probs=13.6
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|++|||||||.++..
T Consensus 136 ~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 136 IFTLMIFDECHNTSKQ 151 (696)
T ss_dssp GCSEEEEETGGGCSTT
T ss_pred cccEEEEeCCCcccCc
Confidence 5899999999998643
No 67
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=63.86 E-value=0.91 Score=33.96 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.++++||||||.|..
T Consensus 203 ~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 203 DTRFVVLDEADRMLD 217 (434)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCeEEEccHhhhhc
Confidence 689999999998753
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=63.71 E-value=9.1 Score=28.52 Aligned_cols=50 Identities=6% Similarity=-0.031 Sum_probs=27.6
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcC-CC-------------CCCCceeEEEEcCCCCCC
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQL-DP-------------NGQRDFKGKFVARGPLVG 73 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~-~~-------------~~~~~fKvvvLdEAD~LT 73 (85)
.+++||+..... ++.+.+.+..++...... +. ......-||+|||+|.|.
T Consensus 82 ~~v~INc~~~~t-~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 82 DYIHIDALELAG-MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp EEEEEETTCCC---HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred EEEEEeccccCC-HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 468999876432 335555555555221100 00 011246799999999998
No 69
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=63.37 E-value=1.1 Score=35.91 Aligned_cols=23 Identities=4% Similarity=-0.122 Sum_probs=17.5
Q ss_pred ceeEEEEcCCCCCCHHHHhcccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSL 82 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~ 82 (85)
.--+||+||||+|-.-|-.+.|.
T Consensus 204 ~~~ivI~DEAHNL~d~a~~~~S~ 226 (620)
T 4a15_A 204 NQIVIILDEAHNLPDIGRSIGSF 226 (620)
T ss_dssp GGEEEEETTGGGHHHHHHHHHCE
T ss_pred CCeEEEEECCCchHHHHHHhhcc
Confidence 45699999999998776655443
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=63.14 E-value=2 Score=32.20 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.7
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|.+||+||||.+.+.
T Consensus 149 ~~~~vIvDEaH~~kn~ 164 (500)
T 1z63_A 149 EWKYIVIDEAQNIKNP 164 (500)
T ss_dssp CEEEEEEETGGGGSCT
T ss_pred CcCEEEEeCccccCCH
Confidence 6899999999998653
No 71
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.20 E-value=1 Score=32.17 Aligned_cols=15 Identities=7% Similarity=-0.181 Sum_probs=12.7
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 183 ~~~~vViDEah~~~~ 197 (414)
T 3eiq_A 183 YIKMFVLDEADEMLS 197 (414)
T ss_dssp TCCEEEECSHHHHHH
T ss_pred cCcEEEEECHHHhhc
Confidence 589999999998753
No 72
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.02 E-value=2.7 Score=29.82 Aligned_cols=19 Identities=5% Similarity=-0.269 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
.+++|||+|.|+...|.+.
T Consensus 111 ~vl~iDEi~~~~~~~~~~L 129 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSAL 129 (331)
T ss_dssp SEEEEETGGGSCHHHHHHH
T ss_pred cEEEEEccccCCHHHHHHH
Confidence 5999999999999998763
No 73
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=61.86 E-value=1 Score=32.18 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=13.2
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.+++||+||||.+...
T Consensus 163 ~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 163 DCSLFIMDEADKMLSR 178 (400)
T ss_dssp TCCEEEEESHHHHSSH
T ss_pred cCCEEEEeCchHhhhh
Confidence 5899999999976543
No 74
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=61.07 E-value=1 Score=32.15 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=12.7
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 168 ~~~~iViDEah~~~~ 182 (412)
T 3fht_A 168 KIKVFVLDEADVMIA 182 (412)
T ss_dssp GCCEEEEETHHHHHS
T ss_pred hCcEEEEeCHHHHhh
Confidence 589999999997743
No 75
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=61.05 E-value=3.1 Score=27.93 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.1
Q ss_pred ceeEEEEcCCCCCCHHHHh
Q psy2304 60 DFKGKFVARGPLVGNPWHR 78 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~ 78 (85)
++.+|+||||+.++++++.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~ 94 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFE 94 (184)
T ss_dssp TEEEEEECCGGGSCTTHHH
T ss_pred CCCEEEEECcccCCHHHHH
Confidence 5889999999999877654
No 76
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=60.72 E-value=4.8 Score=24.86 Aligned_cols=14 Identities=7% Similarity=-0.218 Sum_probs=12.2
Q ss_pred eeEEEEcCCCCCCH
Q psy2304 61 FKGKFVARGPLVGN 74 (85)
Q Consensus 61 fKvvvLdEAD~LT~ 74 (85)
..++||||+|.|..
T Consensus 116 ~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 116 NVILFIDELHTMVG 129 (195)
T ss_dssp TEEEEEETGGGGTT
T ss_pred CeEEEEeCHHHHhc
Confidence 57999999999964
No 77
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=60.26 E-value=1.2 Score=33.85 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.|..
T Consensus 226 ~~~~lViDEah~l~~ 240 (563)
T 3i5x_A 226 FVDYKVLDEADRLLE 240 (563)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cceEEEEeCHHHHhc
Confidence 589999999998763
No 78
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=59.50 E-value=4.6 Score=29.69 Aligned_cols=59 Identities=7% Similarity=-0.062 Sum_probs=30.4
Q ss_pred CCCCCeEEEEEc---cccceeEeCCCCCCcccc----hhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHH
Q psy2304 8 TPSKKKIDIMTT---ASNYHIEVNPNDAGIYDR----VVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNP 75 (85)
Q Consensus 8 t~s~k~~eI~~~---~Sn~hlElnpSD~g~~Dr----~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~ 75 (85)
+++|||.-...+ ....++++|+++....-. ..++.+++..... ...+++|||+|.|...
T Consensus 157 pGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~~~il~iDEid~l~~~ 222 (389)
T 3vfd_A 157 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL---------QPSIIFIDQVDSLLCE 222 (389)
T ss_dssp TTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHS---------SSEEEEEETGGGGC--
T ss_pred CCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhc---------CCeEEEEECchhhccc
Confidence 456776433333 234568999988643211 2233333332221 2369999999999443
No 79
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=58.55 E-value=4.1 Score=33.23 Aligned_cols=16 Identities=0% Similarity=0.042 Sum_probs=13.6
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
..+++|||||||.|..
T Consensus 331 ~~l~lvViDEaH~~~~ 346 (673)
T 2wv9_A 331 PNYNLFVMDEAHFTDP 346 (673)
T ss_dssp CCCSEEEEESTTCCCH
T ss_pred ccceEEEEeCCcccCc
Confidence 3689999999999954
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=58.42 E-value=3.3 Score=33.36 Aligned_cols=20 Identities=0% Similarity=-0.177 Sum_probs=18.1
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
++.|++|||+|.|.++.|.+
T Consensus 579 ~~~vl~lDEi~~~~~~~~~~ 598 (758)
T 3pxi_A 579 PYSVVLLDAIEKAHPDVFNI 598 (758)
T ss_dssp SSSEEEEECGGGSCHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHH
Confidence 57899999999999999875
No 81
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=58.33 E-value=3.1 Score=32.28 Aligned_cols=16 Identities=6% Similarity=-0.166 Sum_probs=13.7
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
..+.+||+||||.++.
T Consensus 138 ~~~~~vViDEaH~i~~ 153 (523)
T 1oyw_A 138 WNPVLLAVDEAHCISQ 153 (523)
T ss_dssp SCEEEEEESSGGGGCT
T ss_pred CCCCEEEEeCccccCc
Confidence 3689999999999864
No 82
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=57.98 E-value=3.5 Score=28.62 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=10.1
Q ss_pred eEEEEcCCCCC
Q psy2304 62 KGKFVARGPLV 72 (85)
Q Consensus 62 KvvvLdEAD~L 72 (85)
.+++|||+|.|
T Consensus 132 ~vl~iDEid~l 142 (309)
T 3syl_A 132 GVLFIDEAYYL 142 (309)
T ss_dssp SEEEEETGGGS
T ss_pred CEEEEEChhhh
Confidence 59999999988
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=57.54 E-value=4 Score=32.69 Aligned_cols=21 Identities=0% Similarity=-0.282 Sum_probs=18.5
Q ss_pred ceeEEEEcCCCCCCHHHHhcc
Q psy2304 60 DFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
++.|++|||+|++.++.|.+.
T Consensus 557 ~~~vl~lDEi~~~~~~~~~~L 577 (758)
T 1r6b_X 557 PHAVLLLDEIEKAHPDVFNIL 577 (758)
T ss_dssp SSEEEEEETGGGSCHHHHHHH
T ss_pred CCcEEEEeCccccCHHHHHHH
Confidence 578999999999999988753
No 84
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=57.28 E-value=4.9 Score=27.82 Aligned_cols=60 Identities=12% Similarity=-0.028 Sum_probs=32.4
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCcccc----hhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHH
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGIYDR----VVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPW 76 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~~Dr----~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~A 76 (85)
+++|||.-...+. ....+++|+++....-. ..++.++.. |... .-.+++|||+|.|....
T Consensus 63 ~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~-~~~~--------~~~vl~iDEid~l~~~~ 129 (297)
T 3b9p_A 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAV-ARHM--------QPSIIFIDEVDSLLSER 129 (297)
T ss_dssp SSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHH-HHHT--------CSEEEEEETGGGTSBCC
T ss_pred CCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHH-HHHc--------CCcEEEeccHHHhcccc
Confidence 4667764333332 23357888887643211 123333322 2211 24799999999996543
No 85
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=57.26 E-value=1.4 Score=31.22 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=12.8
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+||+||||.|..
T Consensus 162 ~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 162 KIKMFILDEADEMLS 176 (394)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred hCcEEEEEChHHhhC
Confidence 689999999998743
No 86
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=57.22 E-value=1.5 Score=33.96 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.|..
T Consensus 175 ~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 175 FVDYKVLDEADRLLE 189 (579)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCEEEEEChHHhhc
Confidence 589999999998763
No 87
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=57.07 E-value=5.2 Score=33.04 Aligned_cols=17 Identities=0% Similarity=-0.150 Sum_probs=14.5
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
.+++|||||||.+..+.
T Consensus 318 ~l~~lVlDEAH~l~~~~ 334 (666)
T 3o8b_A 318 AYDIIICDECHSTDSTT 334 (666)
T ss_dssp SCSEEEETTTTCCSHHH
T ss_pred cccEEEEccchhcCccH
Confidence 59999999999887654
No 88
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=55.84 E-value=3.5 Score=32.82 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+|||||||.|+.
T Consensus 165 ~i~~iViDEAH~is~ 179 (591)
T 2v1x_A 165 RFTRIAVDEVHCCSQ 179 (591)
T ss_dssp CEEEEEEETGGGGST
T ss_pred CCcEEEEECcccccc
Confidence 689999999999874
No 89
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=54.95 E-value=3 Score=33.74 Aligned_cols=16 Identities=6% Similarity=-0.184 Sum_probs=13.9
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.+++|||||||.+...
T Consensus 371 ~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 371 IFTLMIFDECHNTTGN 386 (797)
T ss_dssp GCSEEEETTGGGCSTT
T ss_pred cCCEEEEECccccCCC
Confidence 4799999999998864
No 90
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=54.59 E-value=3.3 Score=30.14 Aligned_cols=16 Identities=6% Similarity=-0.108 Sum_probs=11.6
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
...+++|||+|.|...
T Consensus 137 ~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 137 QKGIVFIDEIDKISRL 152 (376)
T ss_dssp TTSEEEEETGGGC---
T ss_pred CCeEEEEcCHHHHhhh
Confidence 3579999999999987
No 91
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=54.45 E-value=1.4 Score=32.82 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=12.7
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.|..
T Consensus 235 ~~~~iViDEah~~~~ 249 (479)
T 3fmp_B 235 KIKVFVLDEADVMIA 249 (479)
T ss_dssp GCCEEEECCHHHHHT
T ss_pred cCCEEEEECHHHHhh
Confidence 689999999997753
No 92
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=54.28 E-value=2 Score=29.55 Aligned_cols=17 Identities=6% Similarity=-0.179 Sum_probs=14.5
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
+..+++|||+|.|..+.
T Consensus 116 ~~~vl~iDEi~~l~~~~ 132 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKG 132 (310)
T ss_dssp HHCEEEEECGGGGSCCS
T ss_pred CCCEEEEEChhhcCccc
Confidence 36799999999998765
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=53.70 E-value=3.7 Score=28.34 Aligned_cols=13 Identities=15% Similarity=-0.281 Sum_probs=11.0
Q ss_pred eeEEEEcCCCCCC
Q psy2304 61 FKGKFVARGPLVG 73 (85)
Q Consensus 61 fKvvvLdEAD~LT 73 (85)
--|+|||||+.+-
T Consensus 88 ~~vliIDEAq~l~ 100 (199)
T 2r2a_A 88 GSIVIVDEAQDVW 100 (199)
T ss_dssp TCEEEETTGGGTS
T ss_pred ceEEEEEChhhhc
Confidence 4599999999983
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=53.52 E-value=6.2 Score=25.54 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=16.0
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
..+++||||.+.+....|.+
T Consensus 83 ~~~lLilDE~~~~~~~~~~~ 102 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQAL 102 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHH
T ss_pred CCCEEEEeCccccChHHHHH
Confidence 36899999999998766543
No 95
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=52.89 E-value=2.7 Score=26.22 Aligned_cols=13 Identities=15% Similarity=-0.141 Sum_probs=11.7
Q ss_pred eeEEEEcCCCCCC
Q psy2304 61 FKGKFVARGPLVG 73 (85)
Q Consensus 61 fKvvvLdEAD~LT 73 (85)
..++||||+|.|.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 5799999999997
No 96
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=52.71 E-value=3.7 Score=32.01 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+||+||||.+..
T Consensus 136 ~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 136 DFSLIIIDECHHTNK 150 (699)
T ss_dssp GCSEEEEESGGGCBT
T ss_pred cCcEEEEECccccCc
Confidence 689999999998844
No 97
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=51.37 E-value=3.1 Score=27.15 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=14.2
Q ss_pred ceeEEEEcCCCCCCHHH
Q psy2304 60 DFKGKFVARGPLVGNPW 76 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~A 76 (85)
..+++||||+|.+..+.
T Consensus 104 ~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHP 120 (242)
T ss_dssp GSSEEEEETGGGGTTCH
T ss_pred CCCEEEEeccccccCCH
Confidence 35899999999998755
No 98
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=50.87 E-value=2.5 Score=22.96 Aligned_cols=13 Identities=38% Similarity=0.273 Sum_probs=10.5
Q ss_pred eeeCCCCCeEEEE
Q psy2304 5 IKNTPSKKKIDIM 17 (85)
Q Consensus 5 ~~~t~s~k~~eI~ 17 (85)
-|.|.|||+++|.
T Consensus 7 gFhTASGKkv~Ia 19 (35)
T 1n0w_B 7 GFHTASGKKVKIA 19 (35)
T ss_dssp SCEETTSCBCCCC
T ss_pred eeeecCCcEEEeh
Confidence 3779999998874
No 99
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=50.34 E-value=2.2 Score=32.65 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.|++||+||||.+..
T Consensus 259 ~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 259 DIKVFVLDEADNMLD 273 (508)
T ss_dssp TCCEEEECCHHHHTT
T ss_pred CCCEEEEechhhhcc
Confidence 699999999998875
No 100
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=48.77 E-value=7.4 Score=31.98 Aligned_cols=20 Identities=0% Similarity=-0.195 Sum_probs=17.9
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
++.+++|||+|.|..+.|..
T Consensus 660 ~~~vl~lDEi~~l~~~~~~~ 679 (854)
T 1qvr_A 660 PYSVILFDEIEKAHPDVFNI 679 (854)
T ss_dssp SSEEEEESSGGGSCHHHHHH
T ss_pred CCeEEEEecccccCHHHHHH
Confidence 57899999999999998865
No 101
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=47.96 E-value=2.3 Score=30.96 Aligned_cols=14 Identities=29% Similarity=0.095 Sum_probs=12.0
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
.+++||+||||.+.
T Consensus 139 ~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 139 RFDFVFVDDVDAVL 152 (414)
T ss_dssp CCSEEEESCHHHHH
T ss_pred cccEEEEeChHhhh
Confidence 69999999998654
No 102
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=47.60 E-value=4.6 Score=33.78 Aligned_cols=16 Identities=6% Similarity=-0.184 Sum_probs=13.9
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|++||+||||.+...
T Consensus 371 ~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 371 IFTLMIFDECHNTTGN 386 (936)
T ss_dssp GCSEEEEETGGGCSTT
T ss_pred CCCEEEEECccccCCC
Confidence 4799999999998865
No 103
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=47.25 E-value=4.9 Score=31.99 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 138 ~~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 138 DVKILVADEIHLIGS 152 (720)
T ss_dssp GEEEEEEETGGGGGC
T ss_pred cCCEEEEECCcccCC
Confidence 689999999998753
No 104
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=46.75 E-value=5.2 Score=31.68 Aligned_cols=14 Identities=0% Similarity=-0.116 Sum_probs=12.7
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
.+++||+||||.|.
T Consensus 145 ~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 145 EVNYFVLDELHYLN 158 (715)
T ss_dssp GEEEEEECSGGGGG
T ss_pred ccCEEEEechhhcC
Confidence 68999999999976
No 105
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=46.23 E-value=6.1 Score=32.35 Aligned_cols=14 Identities=0% Similarity=0.131 Sum_probs=12.4
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
.|.+|||||||.|.
T Consensus 239 ~v~lvVIDEaH~l~ 252 (677)
T 3rc3_A 239 PYEVAVIDEIQMIR 252 (677)
T ss_dssp CEEEEEECSGGGGG
T ss_pred cCCEEEEecceecC
Confidence 57999999999884
No 106
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=45.54 E-value=15 Score=26.55 Aligned_cols=58 Identities=10% Similarity=-0.011 Sum_probs=31.6
Q ss_pred CCCCCeEEEEEcc----ccceeEeCCCCCCccc----chhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCH
Q psy2304 8 TPSKKKIDIMTTA----SNYHIEVNPNDAGIYD----RVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 8 t~s~k~~eI~~~~----Sn~hlElnpSD~g~~D----r~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~ 74 (85)
+++|||.-...+. ...++.+++++....- ...++.+....... .-.+|+|||+|.|..
T Consensus 54 pGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~---------~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 54 PGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN---------KPSIIFIDEIDSLCG 119 (322)
T ss_dssp SSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHT---------SSEEEEEETTTGGGC
T ss_pred CCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhc---------CCcEEEeecHHHhcc
Confidence 4567764333332 2346788888753221 12344443332221 246999999999954
No 107
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=44.61 E-value=6.6 Score=26.35 Aligned_cols=13 Identities=15% Similarity=-0.020 Sum_probs=8.0
Q ss_pred eeEEEEcCCCCCC
Q psy2304 61 FKGKFVARGPLVG 73 (85)
Q Consensus 61 fKvvvLdEAD~LT 73 (85)
-.+++|||+|.|.
T Consensus 99 ~~vl~iDeid~l~ 111 (262)
T 2qz4_A 99 PCIVYIDEIDAVG 111 (262)
T ss_dssp SEEEEEECC----
T ss_pred CeEEEEeCcchhh
Confidence 4699999999994
No 108
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=44.25 E-value=7.3 Score=30.76 Aligned_cols=19 Identities=5% Similarity=-0.041 Sum_probs=16.7
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
.+++|||+|.|++.+|.+.
T Consensus 203 gvL~LDEi~~l~~~~q~~L 221 (604)
T 3k1j_A 203 GVLFIDEIATLSLKMQQSL 221 (604)
T ss_dssp SEEEETTGGGSCHHHHHHH
T ss_pred CEEEEechhhCCHHHHHHH
Confidence 4999999999999998753
No 109
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=44.10 E-value=4.2 Score=28.57 Aligned_cols=16 Identities=0% Similarity=-0.178 Sum_probs=13.6
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
...++||||+|.|...
T Consensus 130 ~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKR 145 (387)
T ss_dssp SEEEEEEETTTHHHHS
T ss_pred CeEEEEEccHhhhccc
Confidence 3669999999999775
No 110
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=43.46 E-value=8.4 Score=31.42 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=13.1
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.|.+||+||||.+-+
T Consensus 367 ~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 367 KWQFMAVDEAHRLKN 381 (800)
T ss_dssp EEEEEEETTGGGGCC
T ss_pred CcceeehhhhhhhcC
Confidence 689999999999843
No 111
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=43.16 E-value=7.2 Score=31.12 Aligned_cols=19 Identities=5% Similarity=-0.237 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
-+++|||+|.|.++.|.+.
T Consensus 393 gil~IDEid~l~~~~q~~L 411 (595)
T 3f9v_A 393 GIAVIDEIDKMRDEDRVAI 411 (595)
T ss_dssp SEECCTTTTCCCSHHHHHH
T ss_pred CcEEeehhhhCCHhHhhhh
Confidence 5899999999999998764
No 112
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=42.92 E-value=11 Score=32.12 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=13.2
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+||+||||.+..
T Consensus 147 ~l~lvViDEaH~l~d 161 (997)
T 4a4z_A 147 DVEFVIFDEVHYVND 161 (997)
T ss_dssp GEEEEEECCTTCCCT
T ss_pred CCCEEEEECcccccc
Confidence 689999999998864
No 113
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=42.17 E-value=9.6 Score=32.08 Aligned_cols=15 Identities=7% Similarity=-0.079 Sum_probs=13.5
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.|.+||+||||.+.+
T Consensus 273 ~~dlVIvDEAH~~kn 287 (968)
T 3dmq_A 273 EWDLLVVDEAHHLVW 287 (968)
T ss_dssp CCCEEEECCSSCCCC
T ss_pred CCCEEEehhhHhhcC
Confidence 599999999999965
No 114
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=41.51 E-value=18 Score=23.78 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=14.1
Q ss_pred cccceeEeCCCCCCcccchhhHHHH
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELI 44 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~I 44 (85)
.+.++|||||.. .+|+.+.
T Consensus 65 ~~k~~LEINp~H------plIk~L~ 83 (126)
T 1sf8_A 65 EVKYIFELNPDH------VLVKRAA 83 (126)
T ss_dssp CCCCEEEECTTS------HHHHHHH
T ss_pred cCCeeeeECCCC------HHHHHHH
Confidence 467899999986 5666653
No 115
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=40.98 E-value=6.1 Score=31.36 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=12.9
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++||+||||.|..
T Consensus 138 ~~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 138 AVSCLVVDEIHLLDS 152 (702)
T ss_dssp GCCEEEETTGGGGGC
T ss_pred hcCEEEEeeeeecCC
Confidence 689999999998753
No 116
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=40.63 E-value=7.5 Score=30.92 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=13.7
Q ss_pred CceeEEEEcCCCCCCH
Q psy2304 59 RDFKGKFVARGPLVGN 74 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~ 74 (85)
..|.+||+||||.+-+
T Consensus 191 ~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKN 206 (644)
T ss_dssp SCCCEEEETTGGGCCT
T ss_pred CCccEEEEECceecCC
Confidence 3689999999999864
No 117
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=40.07 E-value=8.6 Score=30.60 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=13.6
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
+++++|+|||+.|+.+
T Consensus 262 ~~d~lIIDEAsml~~~ 277 (608)
T 1w36_D 262 HLDVLVVDEASMIDLP 277 (608)
T ss_dssp SCSEEEECSGGGCBHH
T ss_pred CCCEEEEechhhCCHH
Confidence 5889999999977754
No 118
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=39.37 E-value=7.8 Score=26.38 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=12.4
Q ss_pred eeEEEEcCCCCCCHHH
Q psy2304 61 FKGKFVARGPLVGNPW 76 (85)
Q Consensus 61 fKvvvLdEAD~LT~~A 76 (85)
..+++|||+|.|....
T Consensus 104 ~~vl~iDEid~l~~~~ 119 (268)
T 2r62_A 104 PSIIFIDEIDAIGKSR 119 (268)
T ss_dssp SCEEEESCGGGTTC--
T ss_pred CeEEEEeChhhhcccc
Confidence 4799999999997653
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=39.26 E-value=5.8 Score=27.22 Aligned_cols=13 Identities=8% Similarity=-0.072 Sum_probs=11.0
Q ss_pred eeEEEEcCCCCCC
Q psy2304 61 FKGKFVARGPLVG 73 (85)
Q Consensus 61 fKvvvLdEAD~LT 73 (85)
-.+++|||+|.|.
T Consensus 111 ~~vl~iDEid~l~ 123 (285)
T 3h4m_A 111 PSIIFIDEIDAIA 123 (285)
T ss_dssp SEEEEEETTHHHH
T ss_pred CeEEEEECHHHhc
Confidence 3699999999983
No 120
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=38.91 E-value=8 Score=27.31 Aligned_cols=19 Identities=0% Similarity=-0.123 Sum_probs=15.2
Q ss_pred eeEEEEcCCCCCCH--HHHhc
Q psy2304 61 FKGKFVARGPLVGN--PWHRA 79 (85)
Q Consensus 61 fKvvvLdEAD~LT~--~AQ~a 79 (85)
..+++|||+|.|.. .+|.+
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~ 119 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIE 119 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHH
Confidence 57999999999986 56643
No 121
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=37.98 E-value=12 Score=28.31 Aligned_cols=21 Identities=0% Similarity=-0.042 Sum_probs=17.4
Q ss_pred CceeEEEEcCCCCCCHHHHhc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a 79 (85)
..+++||+|||..++...+.+
T Consensus 127 ~~~~~iiiDE~~~~~~~~~~~ 147 (459)
T 3upu_A 127 AKCRVLICDEVSMYDRKLFKI 147 (459)
T ss_dssp SSCSEEEESCGGGCCHHHHHH
T ss_pred cCCCEEEEECchhCCHHHHHH
Confidence 368999999999998876654
No 122
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=37.96 E-value=4.8 Score=34.44 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=13.8
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
.++++.+||||||+|-
T Consensus 201 lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 201 QRPLHFAVIDEVDSIL 216 (844)
T ss_dssp CCCCCEEEEETHHHHH
T ss_pred ccCCCEEEECchhhhh
Confidence 4579999999999975
No 123
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=37.34 E-value=6.5 Score=27.06 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=11.6
Q ss_pred ceeEEEEcCCCCC
Q psy2304 60 DFKGKFVARGPLV 72 (85)
Q Consensus 60 ~fKvvvLdEAD~L 72 (85)
+..++||||+|.|
T Consensus 124 ~~~vl~iDEid~l 136 (272)
T 1d2n_A 124 QLSCVVVDDIERL 136 (272)
T ss_dssp SEEEEEECCHHHH
T ss_pred CCcEEEEEChhhh
Confidence 4789999999987
No 124
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=36.67 E-value=15 Score=30.60 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=12.2
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+||+||||.+..
T Consensus 490 ~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 490 NLGLVIIDEQHRFGV 504 (780)
T ss_dssp CCCEEEEESCCCC--
T ss_pred CCceEEecccchhhH
Confidence 689999999999854
No 125
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=35.73 E-value=12 Score=32.29 Aligned_cols=15 Identities=0% Similarity=-0.079 Sum_probs=13.3
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.|..
T Consensus 290 ~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 290 EVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HEEEEEEETGGGTTS
T ss_pred cCCEEEEhhhhhccc
Confidence 589999999999864
No 126
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=35.44 E-value=8.7 Score=28.06 Aligned_cols=58 Identities=7% Similarity=-0.109 Sum_probs=30.4
Q ss_pred CCCCCeEEEEEc---cccceeEeCCCCCCcccc----hhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCH
Q psy2304 8 TPSKKKIDIMTT---ASNYHIEVNPNDAGIYDR----VVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 8 t~s~k~~eI~~~---~Sn~hlElnpSD~g~~Dr----~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~ 74 (85)
+++|||.-...+ ....++++|+++....-. ..++.++...... ...+|+|||+|.|..
T Consensus 126 pGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 126 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ---------QPAVIFIDEIDSLLS 190 (357)
T ss_dssp TTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHT---------CSEEEEEETHHHHTB
T ss_pred CCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhc---------CCeEEEEeCchhhhc
Confidence 456676433333 223457888887632211 1233332222111 357999999999854
No 127
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=35.07 E-value=12 Score=25.61 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=13.7
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
++-+|+||||..|+++
T Consensus 81 ~~dvViIDEaqfl~~~ 96 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDE 96 (191)
T ss_dssp TCSEEEECSGGGSCTH
T ss_pred cCCEEEEECCCCCCHH
Confidence 4789999999999765
No 128
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=34.86 E-value=4.1 Score=29.56 Aligned_cols=15 Identities=0% Similarity=-0.113 Sum_probs=12.9
Q ss_pred eeEEEEcCCCCCCHH
Q psy2304 61 FKGKFVARGPLVGNP 75 (85)
Q Consensus 61 fKvvvLdEAD~LT~~ 75 (85)
..+++|||+|.|...
T Consensus 117 ~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 117 RGIVYIDQIDKISRK 131 (363)
T ss_dssp HCEEEEECHHHHCCC
T ss_pred CcEEEEeChhhhccc
Confidence 469999999998876
No 129
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=34.63 E-value=6 Score=33.96 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=13.8
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
.++++.+||||||+|-
T Consensus 192 ~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 192 QRKLHYALVDEVDSIL 207 (853)
T ss_dssp CCSCCEEEESCHHHHT
T ss_pred ccCCcEEEECchHHHH
Confidence 4579999999999876
No 130
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=34.55 E-value=14 Score=24.96 Aligned_cols=14 Identities=0% Similarity=-0.237 Sum_probs=11.9
Q ss_pred CceeEEEEcCCCCC
Q psy2304 59 RDFKGKFVARGPLV 72 (85)
Q Consensus 59 ~~fKvvvLdEAD~L 72 (85)
.++.++||||++.|
T Consensus 104 ~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 104 PGQRVCVIDEIGKM 117 (189)
T ss_dssp SCCCCEEECCCSTT
T ss_pred cCCCEEEEeCCCcc
Confidence 36889999999877
No 131
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=33.54 E-value=18 Score=31.15 Aligned_cols=15 Identities=0% Similarity=-0.422 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+.+||+||||++..
T Consensus 401 ~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 401 QQVVFIFDECHRSQF 415 (1038)
T ss_dssp SCEEEEEESCCTTHH
T ss_pred cccEEEEEccchhcc
Confidence 578999999999865
No 132
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=33.47 E-value=6.4 Score=34.13 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=13.9
Q ss_pred CCceeEEEEcCCCCCC
Q psy2304 58 QRDFKGKFVARGPLVG 73 (85)
Q Consensus 58 ~~~fKvvvLdEAD~LT 73 (85)
.++++.+||||||+|-
T Consensus 229 lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 229 QRGHHYAIVDEVDSIL 244 (922)
T ss_dssp CCCCCEEEETTHHHHH
T ss_pred cCCCCEEEEeChHHHH
Confidence 4579999999999876
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=32.79 E-value=27 Score=22.18 Aligned_cols=19 Identities=0% Similarity=-0.274 Sum_probs=13.9
Q ss_pred ceeEEEEcCCC--CCCHHHHh
Q psy2304 60 DFKGKFVARGP--LVGNPWHR 78 (85)
Q Consensus 60 ~fKvvvLdEAD--~LT~~AQ~ 78 (85)
..+++||||.+ .+++..+.
T Consensus 100 ~~~llilDE~~~~~~~~~~~~ 120 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRE 120 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHH
Confidence 35899999999 56665543
No 134
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=32.01 E-value=8.7 Score=27.70 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=10.1
Q ss_pred ceeEEEEcCCC
Q psy2304 60 DFKGKFVARGP 70 (85)
Q Consensus 60 ~fKvvvLdEAD 70 (85)
..|+++|||||
T Consensus 103 ~~kIiiLDEad 113 (212)
T 1tue_A 103 DTKVAMLDDAT 113 (212)
T ss_dssp TCSSEEEEEEC
T ss_pred CCCEEEEECCC
Confidence 58999999998
No 135
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=31.75 E-value=12 Score=31.91 Aligned_cols=14 Identities=0% Similarity=-0.137 Sum_probs=12.7
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
.+++|||||||.|.
T Consensus 192 ~l~lVViDEaH~l~ 205 (1010)
T 2xgj_A 192 EVAWVIFDEVHYMR 205 (1010)
T ss_dssp GEEEEEEETGGGGG
T ss_pred cCCEEEEechhhhc
Confidence 69999999999884
No 136
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=31.21 E-value=18 Score=26.81 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=15.5
Q ss_pred EEEEcCCCCCCHHHHhc
Q psy2304 63 GKFVARGPLVGNPWHRA 79 (85)
Q Consensus 63 vvvLdEAD~LT~~AQ~a 79 (85)
+++|||.+.|+.+.|..
T Consensus 225 tlfldei~~l~~~~Q~~ 241 (368)
T 3dzd_A 225 TLFLDEVGELDQRVQAK 241 (368)
T ss_dssp EEEEETGGGSCHHHHHH
T ss_pred eEEecChhhCCHHHHHH
Confidence 79999999999999874
No 137
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=31.20 E-value=17 Score=25.53 Aligned_cols=16 Identities=6% Similarity=-0.074 Sum_probs=14.1
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
++.+|+||||..|+.+
T Consensus 89 ~~dvViIDEaQ~l~~~ 104 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDR 104 (223)
T ss_dssp TCCEEEECSGGGSCTH
T ss_pred CCCEEEEecCccCcHH
Confidence 5889999999999876
No 138
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=30.19 E-value=6.8 Score=33.36 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=12.7
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.|..
T Consensus 175 ~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 175 HFDFIFVDDVDAILK 189 (1054)
T ss_dssp CCSEEEESCHHHHHT
T ss_pred cCCEEEEeChhhhhh
Confidence 578999999998654
No 139
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=29.84 E-value=20 Score=26.61 Aligned_cols=17 Identities=6% Similarity=-0.152 Sum_probs=15.6
Q ss_pred EEEEcCCCCCCHHHHhc
Q psy2304 63 GKFVARGPLVGNPWHRA 79 (85)
Q Consensus 63 vvvLdEAD~LT~~AQ~a 79 (85)
+++|||++.|+.+.|..
T Consensus 234 tlfldei~~l~~~~q~~ 250 (387)
T 1ny5_A 234 TLFLDEIGELSLEAQAK 250 (387)
T ss_dssp EEEEESGGGCCHHHHHH
T ss_pred EEEEcChhhCCHHHHHH
Confidence 89999999999999864
No 140
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=28.66 E-value=20 Score=28.27 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=17.2
Q ss_pred eeEEEEcCCCCCCHHHHhcc
Q psy2304 61 FKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..|++|||.+.+++..|.+.
T Consensus 110 ~~IL~IDEI~r~~~~~q~~L 129 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPAILNTL 129 (500)
T ss_dssp CSEEEEESGGGCCHHHHHHH
T ss_pred ceeeeHHhHhhhcHHHHHHH
Confidence 45899999999999999763
No 141
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=27.13 E-value=16 Score=27.77 Aligned_cols=20 Identities=0% Similarity=-0.130 Sum_probs=15.7
Q ss_pred ceeEEEEcCCCCCCH--HHHhc
Q psy2304 60 DFKGKFVARGPLVGN--PWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~--~AQ~a 79 (85)
...++||||+|.|.. .+|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~ 215 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTE 215 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHH
Confidence 367999999999986 56643
No 142
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=26.72 E-value=18 Score=25.80 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=12.2
Q ss_pred eeEEEEcCCCCCCH
Q psy2304 61 FKGKFVARGPLVGN 74 (85)
Q Consensus 61 fKvvvLdEAD~LT~ 74 (85)
-.||+|||+|.|..
T Consensus 111 ~~vl~iDEid~l~~ 124 (322)
T 3eie_A 111 PSIIFIDQVDALTG 124 (322)
T ss_dssp SEEEEEECGGGGSC
T ss_pred CeEEEechhhhhhc
Confidence 46999999999976
No 143
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=26.70 E-value=25 Score=30.32 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.3
Q ss_pred CceeEEEEcCCCCCCHH
Q psy2304 59 RDFKGKFVARGPLVGNP 75 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~ 75 (85)
..+++||+||||.+...
T Consensus 724 ~~l~lvIiDEaH~~g~~ 740 (1151)
T 2eyq_A 724 KDLGLLIVDEEHRFGVR 740 (1151)
T ss_dssp SSEEEEEEESGGGSCHH
T ss_pred cccceEEEechHhcChH
Confidence 36999999999998654
No 144
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=26.67 E-value=27 Score=26.38 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=28.9
Q ss_pred CCCCCeEEEEEcc----ccceeEeCCCCCCcc----cchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCH
Q psy2304 8 TPSKKKIDIMTTA----SNYHIEVNPNDAGIY----DRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 8 t~s~k~~eI~~~~----Sn~hlElnpSD~g~~----Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~ 74 (85)
+++|||.-...+. ...++.+++++.... ....++.+.+..... ...||||||+|.|..
T Consensus 176 pGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~---------~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 176 PGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN---------KPSIIFIDEIDSLCG 241 (444)
T ss_dssp TTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHS---------CSEEEEESCTTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHc---------CCeEEEEechHhhcc
Confidence 4556654333332 234677888775221 112344444332221 246999999999954
No 145
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=26.63 E-value=18 Score=26.45 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=12.3
Q ss_pred eeEEEEcCCCCCCHH
Q psy2304 61 FKGKFVARGPLVGNP 75 (85)
Q Consensus 61 fKvvvLdEAD~LT~~ 75 (85)
..||||||+|.|...
T Consensus 144 ~~vl~iDEid~l~~~ 158 (355)
T 2qp9_X 144 PSIIFIDQVDALTGT 158 (355)
T ss_dssp SEEEEEECGGGGTC-
T ss_pred CeEEEEechHhhccc
Confidence 479999999999753
No 146
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=26.58 E-value=23 Score=27.72 Aligned_cols=15 Identities=0% Similarity=-0.077 Sum_probs=10.8
Q ss_pred EEEEcCCCCCCHHHH
Q psy2304 63 GKFVARGPLVGNPWH 77 (85)
Q Consensus 63 vvvLdEAD~LT~~AQ 77 (85)
+++|||+|.|..+.|
T Consensus 178 vl~lDEid~l~~~~~ 192 (543)
T 3m6a_A 178 VFLLDEIDKMSSDFR 192 (543)
T ss_dssp EEEEEESSSCC----
T ss_pred EEEEhhhhhhhhhhc
Confidence 999999999999865
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=25.16 E-value=15 Score=25.94 Aligned_cols=17 Identities=6% Similarity=-0.199 Sum_probs=14.0
Q ss_pred eeEEEEcCCCCCCHHHH
Q psy2304 61 FKGKFVARGPLVGNPWH 77 (85)
Q Consensus 61 fKvvvLdEAD~LT~~AQ 77 (85)
..+++|||+|.|....+
T Consensus 109 p~il~iDEid~l~~~~~ 125 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARG 125 (301)
T ss_dssp SEEEEECSTTHHHHHHT
T ss_pred CeEEEEEChHHHhhccC
Confidence 46999999999887654
No 148
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=24.14 E-value=27 Score=28.71 Aligned_cols=12 Identities=0% Similarity=0.011 Sum_probs=11.1
Q ss_pred ceeEEEEcCCCC
Q psy2304 60 DFKGKFVARGPL 71 (85)
Q Consensus 60 ~fKvvvLdEAD~ 71 (85)
.+++|||||||.
T Consensus 208 ~~~~lIlDEah~ 219 (773)
T 2xau_A 208 RYSCIILDEAHE 219 (773)
T ss_dssp TEEEEEECSGGG
T ss_pred CCCEEEecCccc
Confidence 689999999996
No 149
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=24.14 E-value=11 Score=32.93 Aligned_cols=14 Identities=0% Similarity=-0.133 Sum_probs=12.6
Q ss_pred ceeEEEEcCCCCCC
Q psy2304 60 DFKGKFVARGPLVG 73 (85)
Q Consensus 60 ~fKvvvLdEAD~LT 73 (85)
+++++||||||+|-
T Consensus 202 ~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 202 PLHYAIIDEVDSIL 215 (997)
T ss_dssp SSCEEEETTHHHHT
T ss_pred CcceEEEechHHHH
Confidence 79999999999865
No 150
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=23.90 E-value=48 Score=22.09 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=14.1
Q ss_pred CCCCCeEEEEEcc-ccceeEeCCC
Q psy2304 8 TPSKKKIDIMTTA-SNYHIEVNPN 30 (85)
Q Consensus 8 t~s~k~~eI~~~~-Sn~hlElnpS 30 (85)
+|++.-.-=..+. +.|||+|+|.
T Consensus 26 ~~~~~~~~~LYcr~~g~~LqI~~d 49 (142)
T 3p6j_A 26 SPEGNGEVLLKSTETGQYLRINPD 49 (142)
T ss_dssp EECSTTCEEEEETTTCCEEEECTT
T ss_pred CcccCcEEEEEEeCCCEEEEECCC
Confidence 4555433333444 3799999994
No 151
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=23.38 E-value=24 Score=24.97 Aligned_cols=14 Identities=7% Similarity=-0.104 Sum_probs=8.9
Q ss_pred eeEEEEcCCCCCCH
Q psy2304 61 FKGKFVARGPLVGN 74 (85)
Q Consensus 61 fKvvvLdEAD~LT~ 74 (85)
.-|++|||+|.+..
T Consensus 100 ~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 100 MCCLFINDLDAGAG 113 (293)
T ss_dssp CCCEEEECCC----
T ss_pred CeEEEEechhhhcC
Confidence 46899999999876
No 152
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=23.11 E-value=12 Score=32.24 Aligned_cols=15 Identities=27% Similarity=0.107 Sum_probs=12.4
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
.+++|||||||.+..
T Consensus 196 ~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 196 RFDFVFVDDVDAVLK 210 (1104)
T ss_dssp CCSEEEESCHHHHTT
T ss_pred CcCEEEEeCCCcccc
Confidence 699999999986553
No 153
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=22.80 E-value=66 Score=21.07 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=19.5
Q ss_pred CCCCeEEEEEccccc-eeEeCCCCC
Q psy2304 9 PSKKKIDIMTTASNY-HIEVNPNDA 32 (85)
Q Consensus 9 ~s~k~~eI~~~~Sn~-hlElnpSD~ 32 (85)
-.|||+|-.++.|.| .+-|+|+|.
T Consensus 66 v~GRKveaEVi~sp~dYvli~P~Di 90 (107)
T 2jys_A 66 VQGRKVEAEVLASPYDYILLNPSDV 90 (107)
T ss_dssp ESSCEEEEEEEEESSSSEEECTTTC
T ss_pred EcCeEEEEEEecCcccEEEEcCcCc
Confidence 458899999998876 367899985
No 154
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=22.67 E-value=29 Score=24.86 Aligned_cols=20 Identities=5% Similarity=-0.125 Sum_probs=15.9
Q ss_pred ceeEEEEcCCCCCCHHHHhc
Q psy2304 60 DFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a 79 (85)
..+|++|||+|.|...+|.+
T Consensus 102 ~~~v~~iDE~~~l~~~~~e~ 121 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKAVEEL 121 (334)
T ss_dssp TTCEEEEETGGGCCHHHHHH
T ss_pred CCCEEEEcchhhcCHHHHHH
Confidence 35799999999999866543
No 155
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=22.13 E-value=44 Score=20.47 Aligned_cols=11 Identities=18% Similarity=0.141 Sum_probs=8.7
Q ss_pred CceeEEEEcCC
Q psy2304 59 RDFKGKFVARG 69 (85)
Q Consensus 59 ~~fKvvvLdEA 69 (85)
|.||||++|+=
T Consensus 1 ~~y~Vil~NDd 11 (81)
T 3o1f_A 1 SMYKVILVNDD 11 (81)
T ss_dssp CCEEEEEECCS
T ss_pred CceEEEEECCC
Confidence 47999999863
No 156
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=21.70 E-value=25 Score=24.96 Aligned_cols=16 Identities=0% Similarity=-0.024 Sum_probs=13.7
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
++-+|+||||-.|+++
T Consensus 101 ~~dvViIDEaQF~~~~ 116 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGD 116 (214)
T ss_dssp SCCEEEECCGGGSCTT
T ss_pred CCCEEEEECcccCCHH
Confidence 5889999999998754
No 157
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=21.54 E-value=65 Score=20.25 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=11.9
Q ss_pred eCCCCCeEEEEEccccceeEeCCCCC
Q psy2304 7 NTPSKKKIDIMTTASNYHIEVNPNDA 32 (85)
Q Consensus 7 ~t~s~k~~eI~~~~Sn~hlElnpSD~ 32 (85)
++++||++. ++++|+|-
T Consensus 27 k~~~Gkk~~---------v~v~p~DT 43 (93)
T 3plu_A 27 NDRLGKKVR---------VKCLGEDS 43 (93)
T ss_dssp ECTTSCEEE---------EEEETTSB
T ss_pred ECCCCCEEE---------EEECCcCH
Confidence 456677665 78889873
No 158
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=21.37 E-value=47 Score=26.92 Aligned_cols=19 Identities=16% Similarity=-0.174 Sum_probs=16.7
Q ss_pred eEEEEcCCCCCCHHHHhcc
Q psy2304 62 KGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 62 KvvvLdEAD~LT~~AQ~a~ 80 (85)
-+++|||.+.|+...|.|.
T Consensus 302 Gvl~lDEIn~~~~~~qsaL 320 (506)
T 3f8t_A 302 GILAVDHLEGAPEPHRWAL 320 (506)
T ss_dssp SEEEEECCTTCCHHHHHHH
T ss_pred CeeehHhhhhCCHHHHHHH
Confidence 5899999999999998774
No 159
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.95 E-value=64 Score=20.33 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=7.2
Q ss_pred ceeEeCCCC
Q psy2304 23 YHIEVNPND 31 (85)
Q Consensus 23 ~hlElnpSD 31 (85)
+-+|++|+|
T Consensus 41 i~lev~p~d 49 (100)
T 1uh6_A 41 VRVKCNTDD 49 (100)
T ss_dssp EEEEEETTS
T ss_pred EEEEeCCCC
Confidence 448999987
No 160
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=20.42 E-value=35 Score=27.06 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=15.5
Q ss_pred ceeEEEEcCCCCCCHHHH
Q psy2304 60 DFKGKFVARGPLVGNPWH 77 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ 77 (85)
++.+||+|||..++....
T Consensus 279 ~~dvlIIDEasml~~~~~ 296 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALM 296 (574)
T ss_dssp SCSEEEECCGGGCCHHHH
T ss_pred cCCEEEEcCccCCCHHHH
Confidence 689999999999987754
No 161
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=20.05 E-value=49 Score=20.82 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=36.5
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
+.+.+++|+|. .-|.++||.|+..+++..+ -.|=++-|.|.|-++++-+
T Consensus 19 ~~dl~f~I~~~-------t~v~kLi~ayc~~~~I~~~----~~IrllFDGdRLdp~~tp~ 67 (82)
T 3goe_A 19 SEDLRLSIPVD-------FTVKDLIKRYCTEVKISFH----ERIRLEFEGEWLDPNDQVQ 67 (82)
T ss_dssp SCCEEEEEETT-------SBHHHHHHHHHHHHTCCCC----TTCEEEETTEECCTTSBGG
T ss_pred CCCeEEEecCC-------CCHHHHHHHHHHHcCCCcC----ceEEEEEcCcccCccCChh
Confidence 56788999885 5689999999999988643 2344556888887776654
Done!