BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2305
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215
R ++ S I + G K+I ++ + + L L GH+GG+ L+++ GIL
Sbjct: 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN--YLLSGNTNGDLSI 273
+ SG+ D + WD++ GC H F ST + D+ N Y+++G+ + L +
Sbjct: 177 V-SGS-TDRTVRVWDIK-KGCCTHVFEGHNSTVR--CLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 274 WNV 276
W +
Sbjct: 232 WKL 234
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 170 HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW 229
H +I G+Y + ++ + + L+ L GH I + S A D I W
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIW 337
Query: 230 DLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN 277
DL N G +++T + + L +L+S +G + W+ N
Sbjct: 338 DLEN-GELMYTLQGHTA----LVGLLRLSDKFLVSAAADGSIRGWDAN 380
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215
R + S I + G K I ++ + + L L GH+GG+ L+++ GIL
Sbjct: 117 LRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN--YLLSGNTNGDLSI 273
+ SG+ D + WD++ GC H F ST + D+ N Y+++G+ + L +
Sbjct: 177 V-SGS-TDRTVRVWDIK-KGCCTHVFEGHNSTVR--CLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 274 WNV 276
W +
Sbjct: 232 WKL 234
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKI 137
+ + SS + LWD G TY+ + V + YS+AFS D +I AG E+K+
Sbjct: 90 FAISSSWDKTLRLWDLRTG---TTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREIKL 144
Query: 138 FST--DRPGRECVSRNLKPW-----FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD 190
++ + N W + + SA + P P ++G ++ ++
Sbjct: 145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ 204
Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
R F K H + HL S NG + +G KD +++ WD+ N F + NQ
Sbjct: 205 IRYTF--KAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILNLTYPQREFDAGSTINQI 261
Query: 251 VY 252
+
Sbjct: 262 AF 263
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
G Y ++ ++ L L+GH + L+F +GI + SG+ D I WD+ C
Sbjct: 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVETGNC 311
Query: 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
I HT + +Q + + N L+SGN + + IW++ T
Sbjct: 312 I-HTL----TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 350
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR 221
S + +H G+ + ++ G+ L L GH + +++ +G + SGA
Sbjct: 200 STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257
Query: 222 KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL 281
D + WD C LHT + + FD +++SG+ + + +W+V T N
Sbjct: 258 -DFMVKVWDPETETC-LHTLQGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETGNC 311
Query: 282 PSSPYEESVQEPLYKFSAHQDCTNGVRWK 310
++ + HQ T+G+ K
Sbjct: 312 ------------IHTLTGHQSLTSGMELK 328
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
G+ + ++S G+ L L GH GG+ + N ++ SG+ D + W+ C
Sbjct: 135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGS-TDRTLKVWNAETGEC 191
Query: 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
I HT ST + ++ ++SG+ + L +W++ T
Sbjct: 192 I-HTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQ 230
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 94/244 (38%), Gaps = 41/244 (16%)
Query: 4 EEDV---DEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGI 60
E+D+ D P G L++ S D +R +DL + + + TL I++G
Sbjct: 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDL--------------RTGQCSLTLSIEDG-- 208
Query: 61 IYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQ--VDEVTHAYSL 118
V S DG Y S+ + +WDS G + N+ YS+
Sbjct: 209 ----VTTVAVSPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262
Query: 119 AFSLDGNKIYAGFLSE-VKIFSTDRPGRECVSR-------NLKPWFRKNIVSAIAINPVH 170
F+ DG + +G L VK+++ + S+ + K+ V ++A
Sbjct: 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 322
Query: 171 PDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL-----LFSGARKDCE 225
I + G+ + + + G PL L+GH + + ++ L +F+ DC+
Sbjct: 323 EYILS-GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381
Query: 226 IICW 229
W
Sbjct: 382 ARIW 385
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 175 ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP 234
A G ++I ++ + + + L+GH I L++ +G L SG+ D + WDLR
Sbjct: 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTG 197
Query: 235 GCIL 238
C L
Sbjct: 198 QCSL 201
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 48 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 105
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 106 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 92
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSS 118
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 50 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 107
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 108 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 94
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSS 120
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 29 VSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 86
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 87 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L + + D I W G F + +S ++ D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWL-AASSADKLIKIW-----GAYDGKFEKTISGHKLGISD 73
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSS 99
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 29 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 86
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 87 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 194 LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF 253
+F L GH ++ ++FS NG L S + D I W G F + +S ++
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGIS 72
Query: 254 DL--TSCSNYLLSGNTNGDLSIWNVNT 278
D+ +S SN L+S + + L IW+V++
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSS 99
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 26 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 83
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 84 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 70
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSS 96
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 26 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 83
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 84 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 70
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSS 96
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 22 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 79
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 80 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 66
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSS 92
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 29 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 86
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 87 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 194 LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF 253
+F L GH ++ ++FS NG L S + D I W G F + +S ++
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGIS 72
Query: 254 DL--TSCSNYLLSGNTNGDLSIWNVNT 278
D+ +S SN L+S + + L IW+V++
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSS 99
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 27 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 84
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 85 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 71
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSS 97
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 32 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 89
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 90 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 76
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSS 102
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 32 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 89
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 90 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 76
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSS 102
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 43 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 100
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 101 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 87
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSS 113
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 31 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 88
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 89 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 75
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSS 101
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 32 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 89
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 90 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW-----GAYDGKFEKTISGHKLGISD 76
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSS 102
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 25 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 82
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 83 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLAS-SSADKLIKIW-----GAYDGKFEKTISGHKLGISD 69
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSS 95
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 29 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 86
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 87 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAS-SSADKLIKIW-----GAYDGKFEKTISGHKLGISD 73
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSS 99
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS++ +P + + A + K+I ++ DG+ + GH GI+ + +SS+ LL S A
Sbjct: 29 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS-A 86
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
D + WD+ + C L T +N + SN ++SG+ + + IW+V T
Sbjct: 87 SDDKTLKIWDVSSGKC-LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254
F L GH ++ ++FS NG L S + D I W G F + +S ++ D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAS-SSADKLIKIW-----GAYDGKFEKTISGHKLGISD 73
Query: 255 L--TSCSNYLLSGNTNGDLSIWNVNT 278
+ +S SN L+S + + L IW+V++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSS 99
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 187 SDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
S++ +P + H + L F+ + + D + WDLRN LHTF
Sbjct: 261 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKD 320
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN 277
+V++ + L S T+ L++W+++
Sbjct: 321 EIFQVHWSPHN-ETILASSGTDRRLNVWDLS 350
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 187 SDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
S++ +P + H + L F+ + + D + WDLRN LHTF
Sbjct: 261 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKD 320
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN 277
+V++ + L S T+ L++W+++
Sbjct: 321 EIFQVHWSPHN-ETILASSGTDRRLNVWDLS 350
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
L+GHNG +T L S+ L A +D +I W L R + + D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNT 278
LT+ Y LS + + L +W+V T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVAT 96
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
+PDGT + + D + ++L ++ K YTL ++ ++ + P
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAK--------------KAMYTLSAQDE--VFSLAFSPN 248
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ T+ + P +L D +++ + Y++ E HA SLA+S DG ++A
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVD----DLRPEFAGYSKAAE-PHAVSLAWSADGQTLFA 303
Query: 130 GFLSEV 135
G+ V
Sbjct: 304 GYTDNV 309
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
L+GHNG +T L S+ L A +D +I W L R + + D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNT 278
LT+ Y LS + + L +W+V T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVAT 96
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
+PDGT + + D + ++L ++ K YTL ++ ++ + P
Sbjct: 205 SPDGTLIASAGKDGEIXLWNLAAK--------------KAXYTLSAQDE--VFSLAFSPN 248
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ T+ + P +L D +++ + Y++ E HA SLA+S DG ++A
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVD----DLRPEFAGYSKAAE-PHAVSLAWSADGQTLFA 303
Query: 130 GFLSEV 135
G+ V
Sbjct: 304 GYTDNV 309
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS ++P H + A G I + + R GH + H++F+++G L S +
Sbjct: 971 VSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1029
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
+D I W+ + + ++ + R+ D + LLS + +G + +WNV T
Sbjct: 1030 -EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD-----SRLLSWSFDGTVKVWNVITGR 1083
Query: 281 L 281
+
Sbjct: 1084 I 1084
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240
PL LKGHNG + FS +GILL +G + EI W++ + G +LH+
Sbjct: 1126 PLHELKGHNGCVRCSAFSLDGILLATG-DDNGEIRIWNVSD-GQLLHS 1171
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 181 KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240
K + +F G L +K H + FSS+ + + D ++ WD G ++HT
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWD-SATGKLVHT 701
Query: 241 FPRQVSTNQRVYFDLTSCSNYLL--SGNTNGDLSIWNVN 277
+ +F T+ SN+LL +G+ + L +W++N
Sbjct: 702 YDEHSEQVNCCHF--TNKSNHLLLATGSNDFFLKLWDLN 738
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 200 HNGGITHLEFSSNGILLFS-GARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC 258
H G + SS+ S A K +I +DL +P LH + F L
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP---LHELKGHNGCVRCSAFSLDGI 1147
Query: 259 SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE 292
L +G+ NG++ IWNV+ L S SV+E
Sbjct: 1148 --LLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1179
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
L+GHNG +T L S+ L A +D +I W L R + + D
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNT 278
LT+ Y LS + + L +W+V T
Sbjct: 67 LTADGAYALSASWDKTLRLWDVAT 90
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
+PDGT + + D + ++L ++ K YTL ++ ++ + P
Sbjct: 199 SPDGTLIASAGKDGEIMLWNLAAK--------------KAMYTLSAQDE--VFSLAFSPN 242
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ T+ + P +L D +++ + Y++ E HA SLA+S DG ++A
Sbjct: 243 RYWLAAATATGIKVFSLDPQYLVD----DLRPEFAGYSKAAE-PHAVSLAWSADGQTLFA 297
Query: 130 GFLSEV 135
G+ V
Sbjct: 298 GYTDNV 303
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
L+GHNG +T L S+ L A +D +I W L R + + D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNT 278
LT+ Y LS + + L +W+V T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVAT 96
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
+PDGT + + D + ++L ++ K YTL ++ ++ + P
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAK--------------KAMYTLSAQDE--VFSLAFSPN 248
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ T+ + P +L D +++ + Y++ E HA SLA+S DG ++A
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVD----DLRPEFAGYSKAAE-PHAVSLAWSADGQTLFA 303
Query: 130 GFLSEV 135
G+ V
Sbjct: 304 GYTDNV 309
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS ++P H + A G I + + R GH + H++F+++G L S +
Sbjct: 964 VSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
+D I W+ + + ++ + R+ D + LLS + +G + +WNV T
Sbjct: 1023 -EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD-----SRLLSWSFDGTVKVWNVITGR 1076
Query: 281 L 281
+
Sbjct: 1077 I 1077
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240
PL LKGHNG + FS +GILL +G + EI W++ + G +LH+
Sbjct: 1119 PLHELKGHNGCVRCSAFSLDGILLATG-DDNGEIRIWNVSD-GQLLHS 1164
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 181 KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240
K + +F G L +K H + FSS+ + + D ++ WD G ++HT
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWD-SATGKLVHT 694
Query: 241 FPRQVSTNQRVYFDLTSCSNYLL--SGNTNGDLSIWNVN 277
+ +F T+ SN+LL +G+ + L +W++N
Sbjct: 695 YDEHSEQVNCCHF--TNKSNHLLLATGSNDFFLKLWDLN 731
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 200 HNGGITHLEFSSNGILLFS-GARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC 258
H G + SS+ S A K +I +DL +P LH + F L
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP---LHELKGHNGCVRCSAFSLDGI 1140
Query: 259 SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE 292
L +G+ NG++ IWNV+ L S SV+E
Sbjct: 1141 --LLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSS--NGI 214
++ V +A NP P A G + + ++S P F L G G+ ++++ +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
+ + A D I WD + C+ T +S F T ++SG+ +G L IW
Sbjct: 200 YMIT-ASDDLTIKIWDYQTKSCVA-TLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIW 255
Query: 275 NVNT 278
N +T
Sbjct: 256 NSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSS--NGI 214
++ V +A NP P A G + + ++S P F L G G+ ++++ +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
+ + A D I WD + C+ T +S F T ++SG+ +G L IW
Sbjct: 200 YMIT-ASDDLTIKIWDYQTKSCVA-TLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIW 255
Query: 275 NVNT 278
N +T
Sbjct: 256 NSST 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
L+GHNG +T L S+ L A +D +I W L R + + D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNT 278
LT+ Y LS + + L +W+V T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVAT 96
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
+PDGT + + D + ++L ++ K YTL ++ ++ + P
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAK--------------KAMYTLSAQDE--VFSLAFSPN 248
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ T+ + P +L D +++ + Y++ E HA SLA+S DG ++A
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVD----DLRPEFAGYSKAAE-PHAVSLAWSADGQTLFA 303
Query: 130 GFLSEV 135
G+ V
Sbjct: 304 GYTDNV 309
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
L+GHNG +T L S+ L A +D +I W L R + + D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNT 278
LT+ Y LS + + L +W+V T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVAT 96
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
+PDGT + + D + ++L ++ K YTL ++ ++ + P
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAK--------------KAMYTLSAQDE--VFSLAFSPN 248
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ T+ + P +L D +++ + Y+ E HA SLA+S DG ++A
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVD----DLRPEFAGYSAAAE-PHAVSLAWSADGQTLFA 303
Query: 130 GFLSEV 135
G+ V
Sbjct: 304 GYTDNV 309
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSS--NGI 214
++ V +A NP P A G + + ++S P F L G G+ ++++ +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
+ + A D I WD + C+ T +S F T ++SG+ +G L IW
Sbjct: 200 YMIT-ASDDLTIKIWDYQTKSCVA-TLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIW 255
Query: 275 NVNT 278
N +T
Sbjct: 256 NSST 259
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 179 YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW 229
Y I +++ G + LKGH + F SN L+SG+R DC I+ W
Sbjct: 312 YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR-DCNILAW 361
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 166 INPVHPDIC--ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD 223
++PV C A+GT + L G L+GH I + +S + + A D
Sbjct: 149 MSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASAD 208
Query: 224 CEIICWDLRNP-GCILHTFPRQVSTNQRVY------------FDLTSCSNYLLSGNTNGD 270
+ WD+R GC++ +Q V TS +LL+ T+
Sbjct: 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268
Query: 271 LSIWN 275
+ +WN
Sbjct: 269 MRLWN 273
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSS--NGI 214
++ V +A NP P A G + + ++S P F L G G+ ++++ +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
+ + A D I WD + C+ T +S F T ++SG+ +G L IW
Sbjct: 200 YMIT-ASDDLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIW 255
Query: 275 NVNT 278
N +T
Sbjct: 256 NSST 259
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 187 SDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
S++ +P + H + L F+ + + D + WDLRN LH+F
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD 318
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP--YEESVQEPLYKFSAHQDCT 304
+V + L S T+ L++W+++ SP E+ E L+ H
Sbjct: 319 EIFQVQWS-PHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 305 NGVRW 309
+ W
Sbjct: 378 SDFSW 382
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
LKGHNG +T + + + A +D II W L R + + D
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNT 278
++S + LSG+ +G L +W++ T
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTT 117
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSD-----GRPLFFLKGHNGGITHLEFSSNGIL 215
V+ IA P PD+ + K I ++ + G P L+GH+ ++ + SS+G
Sbjct: 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF 100
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275
SG+ D + WDL G F V F +S + ++SG+ + + +WN
Sbjct: 101 ALSGSW-DGTLRLWDL-TTGTTTRRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWN 156
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 28/129 (21%)
Query: 7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVW 66
V +PDG+ + D +DL H YTL +GG I + +
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHL--------------YTL---DGGDIINALC 263
Query: 67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSL 122
+ Y+LC++ I +WD G E+K + E SLA+S
Sbjct: 264 FSPNR-------YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316
Query: 123 DGNKIYAGF 131
DG ++AG+
Sbjct: 317 DGQTLFAGY 325
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
LKGHNG +T + + + A +D II W L R + + D
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNT 278
++S + LSG+ +G L +W++ T
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTT 94
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSD-----GRPLFFLKGHNGGITHLEFSSNGIL 215
V+ IA P PD+ + K I ++ + G P L+GH+ ++ + SS+G
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF 77
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275
SG+ D + WDL G F V F +S + ++SG+ + + +WN
Sbjct: 78 ALSGSW-DGTLRLWDL-TTGTTTRRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWN 133
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 28/129 (21%)
Query: 7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVW 66
V +PDG+ + D +DL H YTL +GG I + +
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDLNEGKHL--------------YTL---DGGDIINALC 240
Query: 67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSL 122
+ Y+LC++ I +WD G E+K + E SLA+S
Sbjct: 241 FSPNR-------YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 293
Query: 123 DGNKIYAGF 131
DG ++AG+
Sbjct: 294 DGQTLFAGY 302
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
VS ++P H A G + I + + R H + H++F+++ L S +
Sbjct: 970 VSCCCLSP-HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSS 1028
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTS 279
D EI W+ + CI + +Q D N LLS + +G + +WN+ T
Sbjct: 1029 -DDAEIQVWNWQLDKCIF------LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITG 1081
Query: 280 N 280
N
Sbjct: 1082 N 1082
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 18/184 (9%)
Query: 100 KATYRPYNQVDEVTHAYSLAFSLDGNKIYA-GFLSEVKIFSTDRPGRECVSRNLKPWFRK 158
+ RP+ D V HA FS DG +I + G +++F + G + + +K +
Sbjct: 614 RLVVRPHT--DAVYHA---CFSEDGQRIASCGADKTLQVFKAE-TGEKLL--EIKAHEDE 665
Query: 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT--HLEFSSNGILL 216
+ A + + C++ K + +++ G + H+ + H SS+ +LL
Sbjct: 666 VLCCAFSTDDRFIATCSV---DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276
+G+ DC + WDL C F S N + + L S + +G L +W+
Sbjct: 723 ATGS-SDCFLKLWDLNQKECRNTMFGHTNSVN---HCRFSPDDKLLASCSADGTLKLWDA 778
Query: 277 NTSN 280
++N
Sbjct: 779 TSAN 782
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH 239
PL L+GHNG + FS + LL +G + EI W++ N G +LH
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATG-DDNGEIRIWNVSN-GELLH 1169
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 194 LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN---PGCILHTFPRQVSTNQR 250
+F K H +TH EF+ L + + D + WDLRN + P + N
Sbjct: 196 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA- 254
Query: 251 VYFDLTSCSNYLLSGNTN 268
YF+ T + L + N
Sbjct: 255 AYFNPTDSTKLLTTDQRN 272
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 194 LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN---PGCILHTFPRQVSTNQR 250
+F K H +TH EF+ L + + D + WDLRN + P + N
Sbjct: 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA- 255
Query: 251 VYFDLTSCSNYLLSGNTN 268
YF+ T + L + N
Sbjct: 256 AYFNPTDSTKLLTTDQRN 273
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 94/255 (36%), Gaps = 41/255 (16%)
Query: 37 KSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG 96
+ V P+ +R + GII DY + +D + ++ +++W++
Sbjct: 67 RPVVTPAKRRFNTTPERVLDAPGIIDDYY----LNLLDWSNLNVVAVALERNVYVWNADS 122
Query: 97 GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLK 153
G + A + DE T+ S+ +S DG+ + G L ++ + R +
Sbjct: 123 GSVSA----LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR 178
Query: 154 ----PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEF 209
W R + S +H + + IG L+GH+ + L +
Sbjct: 179 VGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ--IGT-----------LQGHSSEVCGLAW 225
Query: 210 SSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC----SNYLLSG 265
S+G+ L SG D + WD R+ + P+ TN + SN L +G
Sbjct: 226 RSDGLQLASGG-NDNVVQIWDARS------SIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
Query: 266 NTNGDLSI--WNVNT 278
D I WN T
Sbjct: 279 GGTMDKQIHFWNAAT 293
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 261 YLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH 300
Y+LSG+ GDL I N NT ++ ++ + ++P+Y A
Sbjct: 37 YILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQ 76
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI-- 273
+ + DC +I W L + G IL +P S V F S N L+ G NG++ I
Sbjct: 158 VIASVGDDCTLIIWRLTDEGPILAGYPLS-SPGISVQFR-PSNPNQLIVGERNGNIRIFD 215
Query: 274 WNVNTSNLPSSPYEESVQEPLYK 296
W +N S EE+ Q L K
Sbjct: 216 WTLNLS------AEENSQTELVK 232
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI-- 273
+ + DC +I W L + G IL +P S V F S N L+ G NG++ I
Sbjct: 159 VIASVGDDCTLIIWRLTDEGPILAGYPLS-SPGISVQFR-PSNPNQLIVGERNGNIRIFD 216
Query: 274 WNVNTSNLPSSPYEESVQEPLYK 296
W +N S EE+ Q L K
Sbjct: 217 WTLNLS------AEENSQTELVK 233
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV 251
+P + H + L F+ + + D + WDLRN LH+F +V
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
Query: 252 YFDLTSCSNYLLSGNTNGDLSIWNVN 277
+ + L S T+ L +W+++
Sbjct: 328 QWSPHN-ETILASSGTDRRLHVWDLS 352
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV 251
+P + H + L F+ + + D + WDLRN LH+F +V
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
Query: 252 YFDLTSCSNYLLSGNTNGDLSIWNVN 277
+ + L S T+ L +W+++
Sbjct: 330 QWSPHN-ETILASSGTDRRLHVWDLS 354
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-- 254
++ H +T + + + A +D II W L R+++ + D
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 255 LTSCSNYLLSGNTNGDLSIWNV 276
L+S + LSG+ +G+L +W++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDL 459
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV 251
+P + H + L F+ + + D + WDLRN LH+F +V
Sbjct: 272 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
Query: 252 YFDLTSCSNYLLSGNTNGDLSIWNVN 277
+ + L S T+ L +W+++
Sbjct: 332 QWSPHN-ETILASSGTDRRLHVWDLS 356
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDE--VTHAYSLAFSLDGNKIYAGFLSEV 135
Y++C++ I ++D +I P +Q + V S+A+S DG+ +Y+G+ V
Sbjct: 250 YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNV 308
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 36/181 (19%)
Query: 78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA---YSLAFSLDGNKIYAGF--- 131
S F + I L++ V G + + + V H+ + L +S DG KI +
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFED-DSLKNVAHSGSVFGLTWSPDGTKIASASADK 261
Query: 132 ------LSEVKIFSTDRPGRECVSRNLKP-WFRKNIVSAIA---INPVHPDICALGTYSK 181
++ +K+ T G + L W ++ +VS A IN V+P+ LG+ +
Sbjct: 262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE---LGSIDQ 318
Query: 182 IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
+ GHN IT L S++G LFS A + I WD+ G F
Sbjct: 319 V--------------RYGHNKAITALSSSADGKTLFS-ADAEGHINSWDIST-GISNRVF 362
Query: 242 P 242
P
Sbjct: 363 P 363
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 16/58 (27%)
Query: 284 SPYEESVQEPLYKFSAHQD----------------CTNGVRWKHHKFERDLLVADATC 325
P EE+ ++K A+ D T G+R KHH+ +D+ VA+AT
Sbjct: 307 EPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATI 364
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC---SNYLLSGNT 267
S + +G+ D I+ WDLRN L T + +Q+ L C + LLS
Sbjct: 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQ---GHQKGILSLDWCHQDEHLLLSSGR 283
Query: 268 NGDLSIWN 275
+ + +WN
Sbjct: 284 DNTVLLWN 291
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 28/218 (12%)
Query: 78 SYFLCSSMYAPIHLWDSVGGEIKATYRPY-NQVDEVTHAYSLAFSLDGNKIYAGFLSEVK 136
S + +S A I +WD G+ + T + + + V +++ +S K+ A +++
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-------GKLLASCSADMT 173
Query: 137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF 196
I D G EC+ R + + VS+++I P + D + K I ++ G +
Sbjct: 174 IKLWDFQGFECI-RTMHG--HDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKT 229
Query: 197 LKGHNGGITHLEFSSNGILLFSG-----------ARKDCEIICWDLRNP-GCILHTFPRQ 244
GH + + + +G L+ S A K+C+ + R+ CI
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289
Query: 245 VSTNQRVYFDLTSCSN----YLLSGNTNGDLSIWNVNT 278
S+ T S +LLSG+ + + +W+V+T
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT 256
L GH +T ++++ G LLFS KD W N G L T T + D+
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFS-CSKDSSASVWYSLN-GERLGTLDGHTGTIWSI--DVD 83
Query: 257 SCSNYLLSGNTNGDLSIWNVN 277
+ Y ++G+ + + +W+V+
Sbjct: 84 CFTKYCVTGSADYSIKLWDVS 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,256,009
Number of Sequences: 62578
Number of extensions: 494644
Number of successful extensions: 1257
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 145
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)