Query psy2305
Match_columns 334
No_of_seqs 596 out of 1430
Neff 11.5
Searched_HMMs 29240
Date Fri Aug 16 21:18:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 4.7E-50 1.6E-54 344.9 38.1 277 2-333 109-406 (410)
2 3ow8_A WD repeat-containing pr 100.0 4.9E-50 1.7E-54 333.6 36.3 279 2-333 33-316 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 4.7E-49 1.6E-53 330.6 39.1 278 2-333 56-338 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 1.5E-48 5E-53 322.6 39.6 280 2-333 14-298 (304)
5 2pbi_B Guanine nucleotide-bind 100.0 4.4E-48 1.5E-52 326.3 38.4 279 2-333 65-352 (354)
6 4gqb_B Methylosome protein 50; 100.0 1.4E-47 4.8E-52 321.2 34.8 288 3-333 32-326 (344)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.1E-47 3.1E-51 317.3 36.4 293 3-333 18-330 (345)
8 4ery_A WD repeat-containing pr 100.0 5.9E-46 2E-50 308.3 38.9 279 2-333 24-307 (312)
9 4g56_B MGC81050 protein; prote 100.0 8.3E-47 2.8E-51 318.8 33.0 282 2-333 43-338 (357)
10 1erj_A Transcriptional repress 100.0 2.1E-45 7.2E-50 314.4 39.1 291 2-333 65-384 (393)
11 3iz6_a 40S ribosomal protein R 100.0 8.3E-47 2.8E-51 321.7 28.8 283 2-333 67-370 (380)
12 2xzm_R RACK1; ribosome, transl 100.0 1.2E-44 4.1E-49 304.3 39.2 295 2-333 22-335 (343)
13 1nr0_A Actin interacting prote 100.0 4.5E-45 1.5E-49 329.3 39.1 298 2-333 60-517 (611)
14 2hes_X YDR267CP; beta-propelle 100.0 2.7E-45 9.2E-50 306.5 34.2 283 2-333 15-323 (330)
15 3frx_A Guanine nucleotide-bind 100.0 6.9E-45 2.3E-49 302.6 36.5 279 2-333 18-312 (319)
16 1nr0_A Actin interacting prote 100.0 2.5E-44 8.5E-49 324.5 38.0 294 2-333 191-606 (611)
17 2ymu_A WD-40 repeat protein; u 100.0 1E-43 3.5E-48 318.9 37.9 271 2-333 304-575 (577)
18 4gqb_B Methylosome protein 50; 100.0 5.7E-43 1.9E-47 293.2 35.6 246 2-279 83-332 (344)
19 3ow8_A WD repeat-containing pr 100.0 4.2E-43 1.4E-47 291.8 33.3 239 2-277 81-320 (321)
20 3zwl_B Eukaryotic translation 100.0 3.3E-42 1.1E-46 291.8 38.5 280 2-333 33-341 (369)
21 3ei3_B DNA damage-binding prot 100.0 2.5E-42 8.4E-47 294.6 36.8 278 2-333 74-377 (383)
22 1gxr_A ESG1, transducin-like e 100.0 6.9E-42 2.4E-46 286.4 38.2 277 2-333 52-332 (337)
23 3dm0_A Maltose-binding peripla 100.0 4E-42 1.4E-46 314.8 38.8 284 2-333 383-688 (694)
24 1vyh_C Platelet-activating fac 100.0 1.3E-42 4.5E-47 298.6 33.1 239 2-277 151-410 (410)
25 4aow_A Guanine nucleotide-bind 100.0 1.4E-41 4.6E-46 285.1 38.0 291 2-333 39-332 (340)
26 2ynn_A Coatomer subunit beta'; 100.0 3E-42 1E-46 284.7 32.9 243 51-333 7-254 (304)
27 1k8k_C P40, ARP2/3 complex 41 100.0 5.2E-42 1.8E-46 291.2 34.8 296 2-333 9-356 (372)
28 4e54_B DNA damage-binding prot 100.0 1.1E-42 3.7E-47 301.6 31.0 282 2-333 120-425 (435)
29 1r5m_A SIR4-interacting protei 100.0 1E-41 3.5E-46 294.2 36.2 301 2-333 46-420 (425)
30 2ymu_A WD-40 repeat protein; u 100.0 2E-41 6.9E-46 304.0 39.0 271 2-333 263-534 (577)
31 2pm9_A Protein WEB1, protein t 100.0 1.5E-42 5E-47 299.0 29.0 286 2-333 13-332 (416)
32 3i2n_A WD repeat-containing pr 100.0 8.7E-42 3E-46 288.1 32.7 295 2-333 19-348 (357)
33 2pm7_B Protein transport prote 100.0 1.9E-41 6.5E-46 279.0 33.6 249 2-278 10-285 (297)
34 2j04_B YDR362CP, TAU91; beta p 100.0 1E-42 3.6E-47 305.6 27.6 301 3-333 135-512 (524)
35 3dw8_B Serine/threonine-protei 100.0 1.1E-41 3.8E-46 296.3 33.2 306 2-332 29-441 (447)
36 3vl1_A 26S proteasome regulato 100.0 1.8E-42 6.3E-47 298.9 27.6 276 3-333 58-360 (420)
37 3gre_A Serine/threonine-protei 100.0 2.8E-42 9.6E-47 299.3 28.3 297 2-333 64-435 (437)
38 3k26_A Polycomb protein EED; W 100.0 1.2E-41 4E-46 288.3 30.5 288 2-333 19-361 (366)
39 4g56_B MGC81050 protein; prote 100.0 2E-41 6.8E-46 285.9 31.5 246 2-279 95-344 (357)
40 1sq9_A Antiviral protein SKI8; 100.0 2.9E-41 9.8E-46 289.2 32.8 296 2-333 17-390 (397)
41 2pm9_A Protein WEB1, protein t 100.0 5E-42 1.7E-46 295.7 27.2 292 2-333 68-409 (416)
42 3dwl_C Actin-related protein 2 100.0 1.6E-42 5.4E-47 295.1 23.4 292 2-333 12-374 (377)
43 1got_B GT-beta; complex (GTP-b 100.0 2.4E-40 8.2E-45 277.7 35.9 240 2-275 98-340 (340)
44 4aez_A CDC20, WD repeat-contai 100.0 8.6E-41 2.9E-45 286.8 33.1 275 4-333 96-375 (401)
45 1gxr_A ESG1, transducin-like e 100.0 7.4E-41 2.5E-45 280.1 29.6 278 2-333 10-291 (337)
46 3bg1_A Protein SEC13 homolog; 100.0 6.6E-41 2.2E-45 278.2 28.1 247 2-278 14-293 (316)
47 4gga_A P55CDC, cell division c 100.0 1.6E-39 5.5E-44 280.5 37.6 272 4-333 108-390 (420)
48 4h5i_A Guanine nucleotide-exch 100.0 6.2E-41 2.1E-45 283.6 28.0 297 3-333 16-338 (365)
49 1erj_A Transcriptional repress 100.0 7.9E-40 2.7E-44 279.9 34.3 243 3-279 125-390 (393)
50 3mkq_A Coatomer beta'-subunit; 100.0 9.8E-40 3.4E-44 304.3 37.2 277 2-332 14-297 (814)
51 3vl1_A 26S proteasome regulato 100.0 2.4E-39 8.1E-44 279.4 36.1 288 4-333 100-414 (420)
52 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-39 8.8E-44 268.1 34.9 267 2-333 19-291 (313)
53 2pbi_B Guanine nucleotide-bind 100.0 3.2E-39 1.1E-43 272.1 35.7 242 3-275 108-354 (354)
54 3frx_A Guanine nucleotide-bind 100.0 3.5E-39 1.2E-43 268.2 34.3 240 2-279 66-318 (319)
55 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-39 5.6E-44 273.1 31.5 259 51-333 9-278 (345)
56 4ggc_A P55CDC, cell division c 100.0 1.3E-38 4.3E-43 264.6 36.3 272 4-333 28-310 (318)
57 2pm7_B Protein transport prote 100.0 4.3E-39 1.5E-43 265.0 32.8 244 56-333 7-280 (297)
58 4a11_B DNA excision repair pro 100.0 9.6E-39 3.3E-43 274.3 36.1 291 2-333 44-360 (408)
59 2hes_X YDR267CP; beta-propelle 100.0 4.5E-39 1.5E-43 268.8 31.8 248 2-278 59-328 (330)
60 1yfq_A Cell cycle arrest prote 100.0 6.1E-39 2.1E-43 269.3 32.0 275 2-330 12-315 (342)
61 2xzm_R RACK1; ribosome, transl 100.0 1.5E-38 5.2E-43 267.1 33.4 242 2-279 77-341 (343)
62 4ery_A WD repeat-containing pr 100.0 2.9E-38 9.9E-43 262.0 33.2 240 56-333 21-263 (312)
63 3sfz_A APAF-1, apoptotic pepti 100.0 2.6E-38 8.9E-43 306.9 38.1 289 2-333 616-1029(1249)
64 3iz6_a 40S ribosomal protein R 100.0 4E-39 1.4E-43 274.3 27.0 249 51-333 60-324 (380)
65 3f3f_A Nucleoporin SEH1; struc 100.0 7.4E-38 2.5E-42 262.8 32.7 254 2-281 12-340 (351)
66 1p22_A F-BOX/WD-repeat protein 100.0 7.1E-38 2.4E-42 271.4 33.0 274 3-333 135-409 (435)
67 3bg1_A Protein SEC13 homolog; 100.0 6.9E-39 2.4E-43 266.0 24.9 248 53-333 8-288 (316)
68 4aez_A CDC20, WD repeat-contai 100.0 1.7E-37 5.9E-42 266.2 33.7 242 2-280 135-382 (401)
69 3mmy_A MRNA export factor; mRN 100.0 5.4E-37 1.8E-41 259.7 36.2 275 2-331 40-339 (368)
70 3v7d_B Cell division control p 100.0 3.5E-37 1.2E-41 269.3 36.0 271 4-333 125-416 (464)
71 3jrp_A Fusion protein of prote 100.0 6.7E-38 2.3E-42 266.4 30.6 249 2-278 12-287 (379)
72 3v7d_B Cell division control p 100.0 3.6E-37 1.2E-41 269.2 36.0 271 2-333 163-458 (464)
73 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-37 4.1E-42 267.4 30.2 275 5-327 38-333 (402)
74 3k26_A Polycomb protein EED; W 100.0 6.3E-38 2.2E-42 265.3 28.0 244 2-278 70-366 (366)
75 1pgu_A Actin interacting prote 100.0 3.6E-37 1.2E-41 278.2 34.2 279 3-333 208-609 (615)
76 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.7E-37 1.3E-41 268.1 32.7 294 2-327 5-374 (450)
77 1pgu_A Actin interacting prote 100.0 3E-37 1E-41 278.7 32.8 275 2-333 19-323 (615)
78 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-36 7.7E-41 262.8 36.2 264 2-330 160-430 (445)
79 2oaj_A Protein SNI1; WD40 repe 100.0 4.9E-37 1.7E-41 286.7 34.0 203 2-238 18-246 (902)
80 2j04_A TAU60, YPL007P, hypothe 100.0 2.8E-37 9.6E-42 265.8 29.1 293 2-327 16-350 (588)
81 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-38 1.4E-42 305.5 26.7 275 3-333 963-1244(1249)
82 3i2n_A WD repeat-containing pr 100.0 5.2E-37 1.8E-41 258.9 30.0 251 2-279 66-354 (357)
83 3dwl_C Actin-related protein 2 100.0 1.9E-38 6.5E-43 270.0 20.4 242 57-333 10-277 (377)
84 4h5i_A Guanine nucleotide-exch 100.0 7.3E-38 2.5E-42 264.8 23.7 249 2-279 74-344 (365)
85 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-36 4.5E-41 255.4 31.0 263 10-333 45-328 (343)
86 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.1E-36 1.4E-40 261.2 35.1 258 9-333 125-386 (445)
87 2xyi_A Probable histone-bindin 100.0 1.7E-36 5.7E-41 262.4 32.4 310 3-333 47-405 (430)
88 4gga_A P55CDC, cell division c 100.0 4.5E-36 1.6E-40 258.9 34.5 244 2-279 148-396 (420)
89 3dm0_A Maltose-binding peripla 100.0 2.2E-36 7.4E-41 276.8 34.3 243 2-278 431-693 (694)
90 2oaj_A Protein SNI1; WD40 repe 100.0 9.7E-37 3.3E-41 284.8 31.3 305 2-333 152-656 (902)
91 1sq9_A Antiviral protein SKI8; 100.0 5.8E-37 2E-41 262.5 27.4 254 2-279 63-396 (397)
92 1r5m_A SIR4-interacting protei 100.0 4.9E-36 1.7E-40 258.7 33.3 243 3-277 110-424 (425)
93 3vu4_A KMHSV2; beta-propeller 100.0 9.4E-36 3.2E-40 251.1 34.2 281 2-333 20-331 (355)
94 4gq1_A NUP37; propeller, trans 100.0 6.4E-37 2.2E-41 261.7 26.9 299 4-333 18-385 (393)
95 3ei3_B DNA damage-binding prot 100.0 4.7E-36 1.6E-40 255.8 30.4 239 2-278 119-382 (383)
96 3jro_A Fusion protein of prote 100.0 2E-36 7E-41 278.7 29.8 250 2-279 10-286 (753)
97 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-37 7.4E-42 271.9 22.2 233 74-333 170-423 (524)
98 3jrp_A Fusion protein of prote 100.0 1.1E-35 3.9E-40 252.6 31.8 245 56-333 9-282 (379)
99 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-35 5.3E-40 276.0 35.0 288 2-332 56-380 (814)
100 1k8k_C P40, ARP2/3 complex 41 100.0 7.5E-36 2.6E-40 253.3 28.8 239 57-333 7-269 (372)
101 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-35 4.4E-40 249.1 29.9 252 55-333 8-332 (351)
102 3zwl_B Eukaryotic translation 100.0 4.9E-35 1.7E-39 247.7 33.6 242 2-279 75-347 (369)
103 4aow_A Guanine nucleotide-bind 100.0 1.9E-34 6.5E-39 241.6 34.8 242 2-279 87-338 (340)
104 2xyi_A Probable histone-bindin 100.0 4.7E-35 1.6E-39 253.2 31.2 254 2-279 129-411 (430)
105 3gre_A Serine/threonine-protei 100.0 2.4E-36 8.1E-41 262.1 21.0 278 8-333 34-354 (437)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 5.3E-35 1.8E-39 250.9 28.8 251 2-280 82-344 (402)
107 3dw8_B Serine/threonine-protei 100.0 5.9E-35 2E-39 253.9 28.6 246 57-333 27-368 (447)
108 4e54_B DNA damage-binding prot 100.0 6.6E-35 2.3E-39 252.7 27.5 237 56-326 117-363 (435)
109 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-33 3.6E-38 234.3 32.8 236 2-280 60-298 (313)
110 4ggc_A P55CDC, cell division c 100.0 4.7E-33 1.6E-37 231.0 33.9 244 2-279 68-316 (318)
111 3jro_A Fusion protein of prote 100.0 2.4E-34 8.2E-39 264.9 27.8 245 56-333 7-280 (753)
112 4a11_B DNA excision repair pro 100.0 2.2E-33 7.6E-38 240.8 31.9 249 2-280 100-367 (408)
113 3bws_A Protein LP49; two-domai 100.0 5E-33 1.7E-37 240.8 32.9 277 3-333 124-427 (433)
114 1yfq_A Cell cycle arrest prote 100.0 9.3E-34 3.2E-38 237.7 26.0 241 56-333 9-277 (342)
115 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-33 1.2E-37 242.0 28.6 229 2-279 174-415 (435)
116 2w18_A PALB2, fancn, partner a 100.0 1E-32 3.5E-37 223.6 29.1 261 4-333 42-352 (356)
117 1l0q_A Surface layer protein; 100.0 1.2E-31 4.3E-36 229.0 34.7 259 14-333 3-270 (391)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-32 1.2E-36 236.8 31.2 240 3-278 104-391 (450)
119 3lrv_A PRE-mRNA-splicing facto 100.0 4.9E-33 1.7E-37 233.6 24.5 230 71-333 42-287 (343)
120 4gq1_A NUP37; propeller, trans 100.0 3.3E-33 1.1E-37 238.8 21.0 247 9-277 97-388 (393)
121 3mmy_A MRNA export factor; mRN 100.0 9.3E-32 3.2E-36 227.5 28.3 242 2-279 87-347 (368)
122 1l0q_A Surface layer protein; 100.0 1.9E-30 6.4E-35 221.7 34.0 236 3-279 33-276 (391)
123 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-31 5.4E-36 230.2 23.7 226 58-330 15-290 (588)
124 2w18_A PALB2, fancn, partner a 100.0 4.8E-31 1.6E-35 213.9 23.9 185 76-276 144-355 (356)
125 3bws_A Protein LP49; two-domai 100.0 2.1E-29 7.2E-34 218.1 32.8 237 2-278 170-432 (433)
126 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-29 4.1E-34 213.8 28.1 227 56-333 17-266 (355)
127 1nir_A Nitrite reductase; hemo 100.0 1.4E-28 4.9E-33 217.6 30.6 275 8-326 144-439 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.5E-29 8.7E-34 216.0 24.4 275 4-329 65-375 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-27 3.8E-32 205.8 33.9 246 13-315 143-409 (415)
130 1nir_A Nitrite reductase; hemo 100.0 1.3E-27 4.6E-32 211.4 34.3 281 4-333 181-509 (543)
131 2ecf_A Dipeptidyl peptidase IV 100.0 1.1E-28 3.6E-33 227.8 26.5 292 3-329 38-402 (741)
132 2ojh_A Uncharacterized protein 100.0 9.2E-28 3.2E-32 196.7 28.6 260 18-329 17-293 (297)
133 3vgz_A Uncharacterized protein 100.0 5.1E-27 1.7E-31 197.5 32.5 273 3-328 42-334 (353)
134 3u4y_A Uncharacterized protein 100.0 9.6E-26 3.3E-30 188.1 32.9 273 7-333 3-299 (331)
135 3u4y_A Uncharacterized protein 100.0 8.7E-26 3E-30 188.4 31.9 245 3-279 42-305 (331)
136 1xfd_A DIP, dipeptidyl aminope 100.0 9.1E-28 3.1E-32 221.0 21.6 275 4-328 19-380 (723)
137 1ri6_A Putative isomerase YBHE 100.0 7.4E-26 2.5E-30 189.5 29.6 274 14-333 5-303 (343)
138 1ri6_A Putative isomerase YBHE 100.0 7.3E-26 2.5E-30 189.5 29.1 268 3-315 39-334 (343)
139 3o4h_A Acylamino-acid-releasin 100.0 1.3E-26 4.5E-31 208.0 22.6 259 3-330 23-304 (582)
140 2ojh_A Uncharacterized protein 100.0 3.6E-26 1.2E-30 187.2 22.7 232 2-269 42-293 (297)
141 2ecf_A Dipeptidyl peptidase IV 100.0 8.1E-26 2.8E-30 208.5 27.5 274 3-327 110-444 (741)
142 1pby_B Quinohemoprotein amine 99.9 5.1E-25 1.7E-29 184.0 25.7 266 14-333 2-305 (337)
143 2z3z_A Dipeptidyl aminopeptida 99.9 4.4E-25 1.5E-29 202.5 27.4 273 3-328 83-421 (706)
144 1xfd_A DIP, dipeptidyl aminope 99.9 7.4E-25 2.5E-29 201.6 27.4 280 3-325 62-427 (723)
145 3hfq_A Uncharacterized protein 99.9 1E-23 3.4E-28 177.1 32.0 243 68-332 42-311 (347)
146 2z3z_A Dipeptidyl aminopeptida 99.9 3.6E-25 1.2E-29 203.2 25.0 280 4-328 28-376 (706)
147 1k32_A Tricorn protease; prote 99.9 4.9E-25 1.7E-29 210.1 25.8 269 3-330 205-494 (1045)
148 3hfq_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 176.4 29.3 252 3-279 41-320 (347)
149 1z68_A Fibroblast activation p 99.9 1.9E-25 6.4E-30 205.4 19.5 266 6-328 20-376 (719)
150 3scy_A Hypothetical bacterial 99.9 2.5E-23 8.6E-28 175.7 31.1 252 3-279 51-340 (361)
151 1k32_A Tricorn protease; prote 99.9 6.2E-24 2.1E-28 202.5 28.7 268 3-330 297-630 (1045)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-24 5.1E-29 187.0 22.1 211 3-233 38-278 (434)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 2.3E-24 7.8E-29 185.8 21.5 203 71-279 42-279 (434)
154 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-23 4.1E-28 176.5 25.1 239 6-279 4-326 (349)
155 1pby_B Quinohemoprotein amine 99.9 1.8E-23 6E-28 174.6 25.4 238 4-279 36-311 (337)
156 3vgz_A Uncharacterized protein 99.9 1.3E-22 4.6E-27 170.5 30.5 240 4-269 91-335 (353)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.7E-22 6E-27 170.7 28.4 253 3-279 41-342 (365)
158 3scy_A Hypothetical bacterial 99.9 1.2E-21 4.1E-26 165.4 32.8 276 10-333 10-332 (361)
159 3pe7_A Oligogalacturonate lyas 99.9 2.5E-23 8.5E-28 177.3 20.9 268 7-329 41-373 (388)
160 4a5s_A Dipeptidyl peptidase 4 99.9 3E-22 1E-26 184.4 27.7 245 4-279 19-354 (740)
161 3o4h_A Acylamino-acid-releasin 99.9 1.1E-22 3.7E-27 182.6 22.6 231 57-333 20-271 (582)
162 1jmx_B Amine dehydrogenase; ox 99.9 7.5E-22 2.6E-26 165.6 25.2 228 70-333 4-320 (349)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.7E-21 9.1E-26 163.5 27.8 241 69-333 43-336 (365)
164 1z68_A Fibroblast activation p 99.9 6.3E-22 2.2E-26 182.0 21.5 274 4-324 62-426 (719)
165 1q7f_A NHL, brain tumor CG1071 99.9 4.7E-19 1.6E-23 144.5 32.4 247 2-279 30-281 (286)
166 3c5m_A Oligogalacturonate lyas 99.9 1.2E-21 4.1E-26 167.2 17.7 263 4-327 38-370 (396)
167 3fvz_A Peptidyl-glycine alpha- 99.9 2E-19 6.9E-24 149.7 28.4 253 1-279 23-323 (329)
168 4a5s_A Dipeptidyl peptidase 4 99.9 6.7E-20 2.3E-24 168.8 26.4 234 72-327 23-339 (740)
169 3fvz_A Peptidyl-glycine alpha- 99.9 4E-19 1.4E-23 147.9 27.5 242 59-333 24-317 (329)
170 3azo_A Aminopeptidase; POP fam 99.9 1.4E-19 4.8E-24 164.8 26.2 280 2-329 24-358 (662)
171 2oiz_A Aromatic amine dehydrog 99.9 4.8E-19 1.6E-23 149.1 26.9 266 6-315 54-359 (361)
172 2dg1_A DRP35, lactonase; beta 99.9 8E-19 2.7E-23 146.3 27.8 272 3-328 7-300 (333)
173 1q7f_A NHL, brain tumor CG1071 99.9 3E-18 1E-22 139.7 28.8 233 70-333 34-275 (286)
174 3azo_A Aminopeptidase; POP fam 99.8 2.7E-18 9.3E-23 156.4 26.7 238 6-279 81-370 (662)
175 3e5z_A Putative gluconolactona 99.8 8.8E-18 3E-22 137.7 26.3 226 72-333 34-282 (296)
176 2oiz_A Aromatic amine dehydrog 99.8 6.3E-18 2.2E-22 142.3 25.7 269 11-332 13-328 (361)
177 3pe7_A Oligogalacturonate lyas 99.8 2.1E-18 7.1E-23 146.9 22.4 224 71-325 41-307 (388)
178 2gop_A Trilobed protease; beta 99.8 2.1E-17 7.3E-22 138.5 27.5 240 2-315 15-312 (347)
179 2xdw_A Prolyl endopeptidase; a 99.8 5.6E-17 1.9E-21 148.8 31.1 231 60-324 126-396 (710)
180 2dg1_A DRP35, lactonase; beta 99.8 3.9E-16 1.3E-20 130.0 33.6 239 3-277 46-315 (333)
181 2z2n_A Virginiamycin B lyase; 99.8 1.2E-15 4.2E-20 124.8 35.7 274 2-333 15-291 (299)
182 2xdw_A Prolyl endopeptidase; a 99.8 4.6E-17 1.6E-21 149.3 29.5 242 3-280 126-416 (710)
183 2gop_A Trilobed protease; beta 99.8 6.3E-17 2.2E-21 135.6 27.1 221 3-277 60-330 (347)
184 1rwi_B Serine/threonine-protei 99.8 9.6E-17 3.3E-21 129.6 27.1 239 3-279 25-265 (270)
185 1qks_A Cytochrome CD1 nitrite 99.8 9.6E-16 3.3E-20 135.5 34.0 272 11-326 165-458 (567)
186 3e5z_A Putative gluconolactona 99.8 2E-16 6.9E-21 129.5 27.5 237 3-279 29-287 (296)
187 1rwi_B Serine/threonine-protei 99.8 1E-16 3.5E-21 129.4 24.8 233 68-333 26-259 (270)
188 1qks_A Cytochrome CD1 nitrite 99.8 2.8E-15 9.7E-20 132.5 35.6 281 3-325 198-520 (567)
189 2bkl_A Prolyl endopeptidase; m 99.8 6.1E-17 2.1E-21 148.1 25.7 242 3-280 122-399 (695)
190 3no2_A Uncharacterized protein 99.8 8.2E-16 2.8E-20 124.2 28.2 220 12-266 4-231 (276)
191 3dsm_A Uncharacterized protein 99.8 6.4E-16 2.2E-20 128.4 27.5 266 21-333 15-297 (328)
192 3dsm_A Uncharacterized protein 99.8 1.1E-15 3.8E-20 126.9 28.8 255 4-309 46-319 (328)
193 2bkl_A Prolyl endopeptidase; m 99.8 1.9E-16 6.4E-21 144.9 26.3 228 59-323 121-378 (695)
194 2qc5_A Streptogramin B lactona 99.8 1.7E-14 5.7E-19 118.1 35.4 273 2-332 20-295 (300)
195 3no2_A Uncharacterized protein 99.8 5.5E-16 1.9E-20 125.2 24.9 213 76-325 4-230 (276)
196 3c5m_A Oligogalacturonate lyas 99.8 2.2E-17 7.5E-22 140.8 16.9 222 69-326 39-301 (396)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.8 6.2E-15 2.1E-19 121.6 29.9 242 2-279 18-300 (314)
198 1yr2_A Prolyl oligopeptidase; 99.7 3E-15 1E-19 137.9 26.9 242 3-280 164-443 (741)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 9.1E-15 3.1E-19 120.6 27.1 235 71-331 23-292 (314)
200 3sjl_D Methylamine dehydrogena 99.7 2.1E-14 7.3E-19 119.6 26.6 265 6-314 82-384 (386)
201 1yr2_A Prolyl oligopeptidase; 99.7 9.9E-15 3.4E-19 134.4 26.8 221 72-323 169-422 (741)
202 2mad_H Methylamine dehydrogena 99.7 1.6E-13 5.5E-18 115.6 31.7 269 9-332 28-344 (373)
203 3g4e_A Regucalcin; six bladed 99.7 2.8E-13 9.5E-18 110.9 31.0 228 4-267 15-261 (297)
204 2mad_H Methylamine dehydrogena 99.7 1.7E-13 5.8E-18 115.4 30.2 240 6-279 70-351 (373)
205 3g4e_A Regucalcin; six bladed 99.7 8.1E-14 2.8E-18 114.0 26.6 223 74-326 21-260 (297)
206 3hrp_A Uncharacterized protein 99.7 1E-13 3.5E-18 118.4 27.4 233 68-332 133-404 (409)
207 3iuj_A Prolyl endopeptidase; h 99.7 8.4E-14 2.9E-18 127.2 27.3 241 3-280 130-407 (693)
208 2z2n_A Virginiamycin B lyase; 99.7 4.2E-13 1.4E-17 109.6 28.9 227 71-331 20-248 (299)
209 3hrp_A Uncharacterized protein 99.7 3.9E-13 1.3E-17 114.8 29.3 244 2-276 131-408 (409)
210 3dr2_A Exported gluconolactona 99.7 1.2E-13 4.1E-18 113.5 24.9 222 74-333 53-302 (305)
211 2ghs_A AGR_C_1268P; regucalcin 99.6 1.3E-12 4.3E-17 108.4 28.2 219 73-326 56-290 (326)
212 2ghs_A AGR_C_1268P; regucalcin 99.6 3.2E-12 1.1E-16 106.0 30.1 225 4-267 51-291 (326)
213 3sjl_D Methylamine dehydrogena 99.6 2.7E-13 9.4E-18 112.9 23.4 272 7-332 38-357 (386)
214 2qc5_A Streptogramin B lactona 99.6 2.6E-12 8.9E-17 105.0 28.7 227 71-331 25-253 (300)
215 1xip_A Nucleoporin NUP159; bet 99.6 4.3E-14 1.5E-18 118.2 17.3 176 114-324 39-230 (388)
216 3c75_H MADH, methylamine dehyd 99.6 3.8E-13 1.3E-17 114.1 22.7 269 11-332 82-396 (426)
217 3c75_H MADH, methylamine dehyd 99.6 5.6E-13 1.9E-17 113.0 22.2 244 6-279 122-403 (426)
218 1xip_A Nucleoporin NUP159; bet 99.6 8E-14 2.7E-18 116.6 16.6 182 3-220 39-232 (388)
219 3dr2_A Exported gluconolactona 99.6 4.1E-12 1.4E-16 104.3 24.5 230 3-275 46-303 (305)
220 2qe8_A Uncharacterized protein 99.5 1.3E-12 4.5E-17 109.1 20.2 242 68-330 19-313 (343)
221 3iuj_A Prolyl endopeptidase; h 99.5 4.1E-12 1.4E-16 116.1 24.2 221 73-326 136-389 (693)
222 2ece_A 462AA long hypothetical 99.5 3.7E-11 1.3E-15 100.9 27.7 235 11-266 93-399 (462)
223 2qe8_A Uncharacterized protein 99.5 7.9E-12 2.7E-16 104.4 20.4 252 3-275 18-318 (343)
224 1mda_H Methylamine dehydrogena 99.5 3.7E-12 1.3E-16 106.2 18.0 253 6-309 69-364 (368)
225 2ece_A 462AA long hypothetical 99.5 2E-10 7E-15 96.5 28.0 231 75-326 93-399 (462)
226 1npe_A Nidogen, entactin; glyc 99.4 3.9E-09 1.3E-13 84.7 33.3 254 13-315 1-262 (267)
227 2hz6_A Endoplasmic reticulum t 99.4 1.2E-14 4E-19 122.6 -0.4 222 12-279 8-237 (369)
228 2hz6_A Endoplasmic reticulum t 99.4 1.1E-13 3.8E-18 116.6 5.4 181 76-279 8-193 (369)
229 1kb0_A Quinohemoprotein alcoho 99.4 4.7E-11 1.6E-15 108.4 22.5 263 12-315 127-531 (677)
230 1yiq_A Quinohemoprotein alcoho 99.4 9.3E-11 3.2E-15 106.6 23.5 275 12-327 120-538 (689)
231 1fwx_A Nitrous oxide reductase 99.4 2.3E-11 8E-16 105.7 18.4 256 11-327 99-407 (595)
232 1mda_H Methylamine dehydrogena 99.4 1.9E-11 6.6E-16 101.9 16.9 248 24-332 47-340 (368)
233 2iwa_A Glutamine cyclotransfer 99.4 1.5E-09 5.2E-14 85.8 25.3 198 4-233 23-237 (266)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.3 4.8E-09 1.6E-13 88.6 26.8 236 12-280 52-298 (376)
235 1kb0_A Quinohemoprotein alcoho 99.3 1E-09 3.4E-14 99.7 23.2 284 13-333 77-502 (677)
236 1yiq_A Quinohemoprotein alcoho 99.3 1.9E-09 6.4E-14 98.1 24.6 206 13-238 70-342 (689)
237 3hxj_A Pyrrolo-quinoline quino 99.3 4.7E-10 1.6E-14 92.9 19.0 213 77-333 107-319 (330)
238 2iwa_A Glutamine cyclotransfer 99.3 1.9E-09 6.4E-14 85.2 20.9 193 70-279 25-238 (266)
239 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2E-08 6.8E-13 84.8 28.9 262 12-332 102-372 (376)
240 3nol_A Glutamine cyclotransfer 99.3 6.3E-09 2.1E-13 81.3 23.1 192 4-232 45-253 (262)
241 2fp8_A Strictosidine synthase; 99.2 1.7E-08 6E-13 83.2 26.7 255 3-279 20-314 (322)
242 2p4o_A Hypothetical protein; p 99.2 2.7E-08 9.3E-13 81.5 26.0 225 69-327 35-277 (306)
243 1fwx_A Nitrous oxide reductase 99.2 1.2E-09 4.2E-14 95.0 16.8 196 4-233 136-431 (595)
244 2fp8_A Strictosidine synthase; 99.2 5.4E-08 1.9E-12 80.3 26.0 202 68-277 21-268 (322)
245 3v64_C Agrin; beta propeller, 99.1 1.3E-06 4.6E-11 72.7 33.4 199 60-280 74-277 (349)
246 3v65_B Low-density lipoprotein 99.1 8.3E-07 2.8E-11 75.0 31.9 228 15-280 89-320 (386)
247 1npe_A Nidogen, entactin; glyc 99.1 3E-07 1E-11 73.6 27.7 220 4-260 38-263 (267)
248 3nok_A Glutaminyl cyclase; bet 99.1 4.2E-08 1.4E-12 76.7 21.4 182 4-220 57-253 (268)
249 1k3i_A Galactose oxidase precu 99.1 1.6E-08 5.5E-13 91.8 21.8 277 6-327 190-530 (656)
250 3mbr_X Glutamine cyclotransfer 99.1 2E-07 6.8E-12 72.2 24.6 193 4-232 23-232 (243)
251 3nol_A Glutamine cyclotransfer 99.1 2.1E-08 7.2E-13 78.3 19.2 179 71-268 48-245 (262)
252 1kv9_A Type II quinohemoprotei 99.1 3.4E-08 1.1E-12 89.6 23.3 271 13-326 117-520 (668)
253 4a2l_A BT_4663, two-component 99.1 1.9E-06 6.7E-11 80.0 34.2 275 4-331 175-474 (795)
254 4a2l_A BT_4663, two-component 99.1 3.3E-06 1.1E-10 78.5 35.5 280 2-333 357-655 (795)
255 3hxj_A Pyrrolo-quinoline quino 99.1 5E-09 1.7E-13 86.7 15.0 250 7-329 25-275 (330)
256 2p4o_A Hypothetical protein; p 99.0 1.1E-06 3.8E-11 71.8 28.7 230 4-268 34-278 (306)
257 2ad6_A Methanol dehydrogenase 99.0 8.4E-08 2.9E-12 85.3 23.1 262 13-315 115-518 (571)
258 2xe4_A Oligopeptidase B; hydro 99.0 3.9E-07 1.3E-11 84.0 27.5 194 3-230 175-395 (751)
259 3nok_A Glutaminyl cyclase; bet 99.0 1.1E-07 3.8E-12 74.3 19.2 181 114-326 56-253 (268)
260 1ijq_A LDL receptor, low-densi 99.0 7.1E-06 2.4E-10 67.3 33.7 228 15-280 3-240 (316)
261 1w6s_A Methanol dehydrogenase 99.0 6.5E-07 2.2E-11 79.7 26.2 277 7-327 111-536 (599)
262 3tc9_A Hypothetical hydrolase; 99.0 9E-07 3.1E-11 75.9 26.3 155 67-233 138-301 (430)
263 1kv9_A Type II quinohemoprotei 99.0 2.8E-07 9.6E-12 83.6 24.3 206 13-238 66-337 (668)
264 3mbr_X Glutamine cyclotransfer 99.0 2.7E-07 9.2E-12 71.5 20.3 176 73-267 28-223 (243)
265 3p5b_L Low density lipoprotein 99.0 1.2E-05 4.2E-10 68.1 33.8 228 15-280 85-322 (400)
266 4hw6_A Hypothetical protein, I 98.9 1.8E-06 6.2E-11 74.0 26.4 198 67-276 140-372 (433)
267 1flg_A Protein (quinoprotein e 98.9 5.7E-07 1.9E-11 80.1 23.7 276 13-327 117-549 (582)
268 3qqz_A Putative uncharacterize 98.9 4.4E-06 1.5E-10 65.6 25.1 205 2-231 27-251 (255)
269 3v9f_A Two-component system se 98.9 1.9E-05 6.5E-10 73.3 33.5 286 3-332 212-519 (781)
270 3qqz_A Putative uncharacterize 98.9 1.2E-05 4E-10 63.2 26.8 203 59-277 27-252 (255)
271 3v9f_A Two-component system se 98.9 1.5E-05 5E-10 74.0 32.1 286 2-332 313-606 (781)
272 1ijq_A LDL receptor, low-densi 98.9 2E-05 6.7E-10 64.7 29.6 187 80-279 4-196 (316)
273 3v64_C Agrin; beta propeller, 98.9 2E-05 6.7E-10 65.6 29.5 186 79-279 46-235 (349)
274 3v65_B Low-density lipoprotein 98.9 7.9E-06 2.7E-10 69.0 27.3 186 79-279 89-278 (386)
275 3sov_A LRP-6, low-density lipo 98.8 3E-05 1E-09 63.5 32.3 229 15-281 6-241 (318)
276 3m0c_C LDL receptor, low-densi 98.8 6.3E-05 2.1E-09 69.2 33.4 193 74-280 432-634 (791)
277 2ad6_A Methanol dehydrogenase 98.8 7.1E-06 2.4E-10 73.0 26.5 209 13-241 62-342 (571)
278 2xbg_A YCF48-like protein; pho 98.8 3.9E-05 1.3E-09 63.2 32.8 274 3-332 37-316 (327)
279 3tc9_A Hypothetical hydrolase; 98.8 1.1E-05 3.8E-10 69.1 25.8 237 3-277 138-429 (430)
280 4hw6_A Hypothetical protein, I 98.7 2.2E-05 7.5E-10 67.3 26.2 239 3-277 140-432 (433)
281 3kya_A Putative phosphatase; s 98.7 3.3E-05 1.1E-09 66.6 26.9 204 68-276 141-408 (496)
282 1w6s_A Methanol dehydrogenase 98.7 9.1E-06 3.1E-10 72.4 23.8 211 13-241 62-349 (599)
283 2xe4_A Oligopeptidase B; hydro 98.7 2.2E-06 7.4E-11 79.0 20.2 191 72-276 180-398 (751)
284 1flg_A Protein (quinoprotein e 98.7 6.1E-05 2.1E-09 67.1 28.7 207 14-241 69-362 (582)
285 3amr_A 3-phytase; beta-propell 98.6 2.5E-05 8.6E-10 63.7 22.2 194 74-277 37-262 (355)
286 3p5b_L Low density lipoprotein 98.6 0.00021 7.1E-09 60.6 28.7 188 79-279 85-278 (400)
287 1n7d_A LDL receptor, low-densi 98.6 9E-07 3.1E-11 80.6 13.8 198 69-279 409-615 (699)
288 2p9w_A MAL S 1 allergenic prot 98.6 7.2E-05 2.5E-09 60.5 23.1 162 67-233 14-215 (334)
289 3kya_A Putative phosphatase; s 98.5 7.1E-05 2.4E-09 64.6 24.1 249 3-279 140-476 (496)
290 4a0p_A LRP6, LRP-6, low-densit 98.5 0.00044 1.5E-08 62.2 33.5 228 14-280 7-239 (628)
291 3sov_A LRP-6, low-density lipo 98.5 0.00026 8.9E-09 58.0 27.5 205 4-242 37-246 (318)
292 1k3i_A Galactose oxidase precu 98.5 7.9E-06 2.7E-10 74.2 17.8 232 70-328 190-476 (656)
293 3m0c_C LDL receptor, low-densi 98.5 0.00022 7.4E-09 65.7 26.3 201 3-233 425-632 (791)
294 3s94_A LRP-6, low-density lipo 98.4 0.00057 2E-08 61.3 28.1 225 21-281 16-246 (619)
295 2xzh_A Clathrin heavy chain 1; 98.4 0.00036 1.2E-08 56.0 30.4 197 73-279 74-291 (365)
296 2ism_A Putative oxidoreductase 98.4 0.00054 1.8E-08 57.0 26.4 232 2-266 31-333 (352)
297 3sre_A PON1, serum paraoxonase 98.4 0.0003 1E-08 58.2 22.3 197 71-275 55-295 (355)
298 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0015 5.1E-08 58.7 28.8 187 79-279 8-198 (628)
299 2p9w_A MAL S 1 allergenic prot 98.3 0.00027 9.2E-09 57.2 21.1 213 5-232 16-264 (334)
300 2ism_A Putative oxidoreductase 98.3 0.00039 1.3E-08 57.8 22.8 239 68-329 33-337 (352)
301 3a9g_A Putative uncharacterize 98.3 0.0012 4E-08 55.0 25.7 234 68-326 31-330 (354)
302 3s94_A LRP-6, low-density lipo 98.3 0.0021 7.1E-08 57.7 31.9 159 2-194 84-247 (619)
303 3a9g_A Putative uncharacterize 98.3 0.0012 4.2E-08 54.8 26.5 234 2-266 29-330 (354)
304 1bpo_A Protein (clathrin); cla 98.2 0.0015 5.1E-08 54.7 31.9 197 73-279 73-290 (494)
305 1n7d_A LDL receptor, low-densi 98.2 1.3E-05 4.6E-10 73.0 13.0 182 86-279 385-572 (699)
306 3sre_A PON1, serum paraoxonase 98.2 0.00012 4.2E-09 60.4 16.8 189 5-220 53-285 (355)
307 2g8s_A Glucose/sorbosone dehyd 98.2 0.0012 4.1E-08 54.9 22.4 244 68-332 20-348 (353)
308 2xbg_A YCF48-like protein; pho 98.1 0.0024 8.4E-08 52.4 27.7 151 114-276 164-320 (327)
309 3amr_A 3-phytase; beta-propell 98.1 0.0025 8.6E-08 52.1 25.3 206 13-241 40-271 (355)
310 3pbp_A Nucleoporin NUP82; beta 98.0 0.0016 5.6E-08 54.4 19.3 149 119-274 27-208 (452)
311 2vpj_A Kelch-like protein 12; 98.0 0.0037 1.3E-07 50.5 21.1 186 76-279 62-279 (301)
312 2g8s_A Glucose/sorbosone dehyd 97.9 0.0058 2E-07 50.8 25.0 67 202-271 271-347 (353)
313 3ei3_A DNA damage-binding prot 97.9 0.017 5.7E-07 55.7 29.8 177 88-278 808-999 (1158)
314 3s25_A Hypothetical 7-bladed b 97.9 0.0039 1.3E-07 50.5 20.1 175 74-279 61-256 (302)
315 3pbp_A Nucleoporin NUP82; beta 97.9 0.0024 8E-08 53.5 18.7 151 75-229 30-208 (452)
316 2xn4_A Kelch-like protein 2; s 97.8 0.01 3.4E-07 48.0 21.7 187 76-279 61-277 (302)
317 1xi4_A Clathrin heavy chain; a 97.7 0.0052 1.8E-07 59.2 20.6 195 73-281 73-292 (1630)
318 2vpj_A Kelch-like protein 12; 97.7 0.011 3.9E-07 47.6 22.5 189 76-279 14-232 (301)
319 3ii7_A Kelch-like protein 7; p 97.7 0.013 4.6E-07 47.3 22.0 186 76-279 55-273 (306)
320 1zgk_A Kelch-like ECH-associat 97.7 0.015 5E-07 47.2 20.5 188 75-279 23-241 (308)
321 3ii7_A Kelch-like protein 7; p 97.6 0.016 5.5E-07 46.8 21.8 187 77-279 12-226 (306)
322 3das_A Putative oxidoreductase 97.6 0.019 6.5E-07 47.2 26.1 237 68-325 34-325 (347)
323 3ei3_A DNA damage-binding prot 97.6 0.062 2.1E-06 51.9 27.4 205 53-275 823-1059(1158)
324 1cru_A Protein (soluble quinop 97.6 0.032 1.1E-06 48.0 26.5 108 69-177 30-161 (454)
325 1zgk_A Kelch-like ECH-associat 97.4 0.038 1.3E-06 44.7 20.8 187 76-279 70-288 (308)
326 2xn4_A Kelch-like protein 2; s 97.4 0.039 1.3E-06 44.5 22.1 188 76-279 15-230 (302)
327 2xzh_A Clathrin heavy chain 1; 97.4 0.041 1.4E-06 44.4 30.5 237 6-279 71-333 (365)
328 1tl2_A L10, protein (tachylect 97.3 0.008 2.7E-07 45.5 13.0 150 159-332 41-204 (236)
329 1tl2_A L10, protein (tachylect 97.2 0.045 1.6E-06 41.5 16.5 141 114-271 42-203 (236)
330 1cru_A Protein (soluble quinop 97.2 0.097 3.3E-06 45.0 29.1 34 2-35 27-60 (454)
331 4asc_A Kelch repeat and BTB do 97.1 0.076 2.6E-06 43.1 21.8 183 79-279 7-222 (315)
332 1bpo_A Protein (clathrin); cla 97.1 0.11 3.7E-06 43.9 30.6 237 6-279 70-332 (494)
333 3das_A Putative oxidoreductase 97.0 0.099 3.4E-06 43.0 28.0 240 1-265 31-325 (347)
334 2be1_A Serine/threonine-protei 97.0 0.0045 1.5E-07 50.7 9.9 192 78-280 11-233 (339)
335 2wg3_C Hedgehog-interacting pr 97.0 0.14 4.7E-06 44.1 26.4 30 2-31 14-44 (463)
336 2uvk_A YJHT; unknown function, 96.8 0.13 4.6E-06 42.4 17.5 21 76-96 19-40 (357)
337 2woz_A Kelch repeat and BTB do 96.8 0.16 5.5E-06 41.2 21.1 185 78-279 17-232 (318)
338 4asc_A Kelch repeat and BTB do 96.7 0.17 5.7E-06 41.0 21.2 188 75-279 44-278 (315)
339 3s25_A Hypothetical 7-bladed b 96.5 0.23 7.9E-06 40.0 21.7 210 7-276 58-291 (302)
340 2zwa_A Leucine carboxyl methyl 96.5 0.22 7.6E-06 45.4 17.9 151 76-233 451-635 (695)
341 3sbq_A Nitrous-oxide reductase 96.4 0.45 1.5E-05 41.5 23.2 248 16-278 73-408 (638)
342 2zwa_A Leucine carboxyl methyl 96.4 0.58 2E-05 42.7 21.6 199 75-279 396-636 (695)
343 2woz_A Kelch repeat and BTB do 96.3 0.32 1.1E-05 39.4 20.2 189 75-279 55-288 (318)
344 2uvk_A YJHT; unknown function, 96.2 0.41 1.4E-05 39.4 18.0 138 87-233 168-342 (357)
345 1xi4_A Clathrin heavy chain; a 96.2 0.75 2.6E-05 45.0 19.4 234 9-279 73-332 (1630)
346 3sbq_A Nitrous-oxide reductase 95.6 0.14 4.7E-06 44.6 10.9 105 114-220 324-453 (638)
347 3ott_A Two-component system se 95.5 1.5 5.2E-05 40.4 33.7 247 3-279 325-587 (758)
348 2be1_A Serine/threonine-protei 95.3 0.96 3.3E-05 37.0 17.3 155 14-192 11-185 (339)
349 3ott_A Two-component system se 95.1 2.1 7.1E-05 39.4 33.3 239 3-279 147-402 (758)
350 2wg3_C Hedgehog-interacting pr 93.7 3.1 0.0001 35.8 26.1 56 68-123 16-79 (463)
351 3q6k_A 43.2 kDa salivary prote 91.3 5.6 0.00019 33.1 23.5 175 88-265 124-341 (381)
352 4gq2_M Nucleoporin NUP120; bet 91.2 7.7 0.00026 36.8 15.4 32 74-105 244-275 (950)
353 3qhy_B Beta-lactamase inhibito 90.5 5.5 0.00019 31.6 22.0 168 86-279 80-247 (282)
354 3b7f_A Glycosyl hydrolase, BNR 87.3 12 0.0004 31.2 28.5 156 114-273 178-367 (394)
355 3q6k_A 43.2 kDa salivary prote 85.6 14 0.0005 30.6 20.5 162 114-278 88-306 (381)
356 4gq2_M Nucleoporin NUP120; bet 85.4 21 0.00072 33.9 14.1 36 203-240 237-272 (950)
357 3b7f_A Glycosyl hydrolase, BNR 85.4 15 0.0005 30.5 30.7 110 114-229 116-258 (394)
358 3zwu_A Alkaline phosphatase PH 82.2 5.2 0.00018 35.5 8.0 59 68-130 478-548 (592)
359 4a9v_A PHOX; hydrolase, beta-p 80.0 11 0.00037 33.2 9.1 61 159-220 476-549 (592)
360 4a9v_A PHOX; hydrolase, beta-p 79.9 7.2 0.00025 34.3 8.0 59 68-130 478-548 (592)
361 3f7f_A Nucleoporin NUP120; nuc 75.5 14 0.00048 33.5 8.7 30 76-105 230-259 (729)
362 4hvt_A Ritya.17583.B, post-pro 75.3 49 0.0017 30.2 21.6 201 73-279 137-382 (711)
363 1zi0_A DNA gyrase subunit A; b 70.7 39 0.0013 27.0 24.4 192 76-278 2-226 (307)
364 4hvt_A Ritya.17583.B, post-pro 69.9 66 0.0023 29.4 20.8 237 6-277 133-429 (711)
365 4fhn_B Nucleoporin NUP120; pro 69.6 11 0.00037 36.7 7.2 34 72-105 244-277 (1139)
366 3zwu_A Alkaline phosphatase PH 67.9 34 0.0012 30.4 9.4 59 4-83 478-548 (592)
367 4fhn_B Nucleoporin NUP120; pro 64.6 27 0.00092 34.0 8.8 37 160-197 239-275 (1139)
368 3uc1_A DNA gyrase subunit A; D 64.6 55 0.0019 26.5 23.4 149 76-233 108-279 (327)
369 1wp5_A Topoisomerase IV; broke 59.3 69 0.0024 25.8 22.1 192 75-278 3-225 (323)
370 3f7f_A Nucleoporin NUP120; nuc 55.8 16 0.00054 33.2 5.1 34 4-39 224-257 (729)
371 1sqj_A OXG-RCBH, oligoxylogluc 54.3 1.4E+02 0.0046 27.7 16.5 62 158-220 14-83 (789)
372 3no0_A DNA gyrase subunit A; D 53.0 81 0.0028 24.7 19.8 148 76-233 79-246 (276)
373 2cn3_A Xyloglucanase, beta-1,4 43.7 1.9E+02 0.0066 26.4 25.8 197 60-265 24-261 (737)
374 1wp5_A Topoisomerase IV; broke 40.6 1.4E+02 0.0049 24.0 25.1 149 124-278 106-277 (323)
375 1q47_A Semaphorin 3A; beta pro 38.4 1.1E+02 0.0037 26.5 7.5 68 160-228 405-487 (495)
376 3l6v_A GYRA, DNA gyrase subuni 38.1 1.7E+02 0.0058 24.1 24.7 149 74-233 4-180 (370)
377 1suu_A DNA gyrase subunit A; t 36.7 1.6E+02 0.0055 23.5 26.5 194 75-278 6-231 (312)
378 3qhy_B Beta-lactamase inhibito 33.3 1.7E+02 0.0059 22.8 22.9 168 86-279 41-208 (282)
379 2zux_A YESW protein; beta-prop 30.8 2.8E+02 0.0097 24.5 18.7 91 160-258 327-424 (591)
380 3mez_B Mannose-specific lectin 30.8 1.1E+02 0.0038 19.9 10.2 26 116-142 59-84 (113)
381 1q47_A Semaphorin 3A; beta pro 30.4 2.1E+02 0.007 24.8 7.9 55 79-136 423-485 (495)
382 1suu_A DNA gyrase subunit A; t 30.0 2.1E+02 0.0072 22.8 25.6 203 10-233 5-231 (312)
383 3al9_A Plexin-A2; beta-propell 29.7 1.2E+02 0.0041 26.6 6.5 67 160-227 401-475 (539)
384 3nvq_A Semaphorin-7A; beta-pro 29.4 1.6E+02 0.0055 26.1 7.1 55 173-228 382-444 (590)
385 3kci_A Probable E3 ubiquitin-p 29.0 2.4E+02 0.0082 23.1 29.5 157 115-278 107-293 (389)
386 1sqj_A OXG-RCBH, oligoxylogluc 26.5 3.9E+02 0.013 24.7 25.4 155 58-220 14-188 (789)
387 2cn3_A Xyloglucanase, beta-1,4 26.2 3.8E+02 0.013 24.5 15.8 105 160-266 24-151 (737)
388 4gz8_A Semaphorin-3A; multi-do 25.7 1.7E+02 0.0059 26.4 6.8 55 173-228 431-495 (667)
389 1olz_A Semaphorin 4D; developm 22.3 2.6E+02 0.0088 25.3 7.3 58 215-273 417-477 (663)
390 3nvq_A Semaphorin-7A; beta-pro 22.1 3.8E+02 0.013 23.8 8.1 60 78-140 381-446 (590)
391 4gz8_A Semaphorin-3A; multi-do 20.3 3.2E+02 0.011 24.7 7.4 58 215-273 431-495 (667)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-50 Score=344.91 Aligned_cols=277 Identities=19% Similarity=0.211 Sum_probs=251.9
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|++++|+|++++|++|+.||+|+|||+.+++.. ..+.+ |...|.+++| +|++++|+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--------------~~l~~-h~~~V~~v~~-------~~~~~~l~ 166 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------------RTLKG-HTDSVQDISF-------DHSGKLLA 166 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--------------EEECC-CSSCEEEEEE-------CTTSSEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--------------EEEec-cCCcEEEEEE-------cCCCCEEE
Confidence 57999999999999999999999999999988765 35544 5678988888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+|+.|++|++||+.+++.+..+..|.. .|.+++|+|++++|++++ |+.|++||+++ +.... .+.+|...
T Consensus 167 sgs~D~~i~iwd~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-~~~~~----~~~~h~~~ 236 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIRTMHGHDH-----NVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVK----TFTGHREW 236 (410)
T ss_dssp EEETTSCCCEEETTSSCEEECCCCCSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEE----EEECCSSC
T ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEE----EEeCCCcc
Confidence 999999999999999998888877665 899999999999999988 99999999997 55555 57889999
Q ss_pred eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccC--------------------CcEEEeee
Q psy2305 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN--------------------GILLFSGA 220 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~ 220 (334)
|.++.++|++. +|++|+.|+.|++||+++++....+.+|...|.+++|+|+ |.+|++++
T Consensus 237 v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 237 VRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred EEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 99999999999 9999999999999999999999999999999999999996 67899999
Q ss_pred cCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH 300 (334)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (334)
.|+.|++||+++ +.++..+.+| ...+.+++|+|+|++|++++.||.|++||+.++ +.+..+.+|
T Consensus 316 -~D~~i~iwd~~~-~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~------------~~~~~~~~h 379 (410)
T 1vyh_C 316 -RDKTIKMWDVST-GMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK------------RCMKTLNAH 379 (410)
T ss_dssp -TTSEEEEEETTT-TEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS------------CCCEEEECC
T ss_pred -CCCeEEEEECCC-CceEEEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------ceEEEEcCC
Confidence 899999999998 7777888776 667889999999999999999999999999887 677889999
Q ss_pred ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
...|++++| +|++ ++|++|+.||+|++
T Consensus 380 ~~~v~~l~~--~~~~----~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 380 EHFVTSLDF--HKTA----PYVVTGSVDQTVKV 406 (410)
T ss_dssp SSCEEEEEE--CSSS----SCEEEEETTSEEEE
T ss_pred CCcEEEEEE--cCCC----CEEEEEeCCCcEEE
Confidence 999999999 9999 99999999999985
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-50 Score=333.59 Aligned_cols=279 Identities=22% Similarity=0.278 Sum_probs=245.8
Q ss_pred CceeEEEEcCC----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 2 DIEEDVDEAPD----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 2 d~V~~~~~sp~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
++|++++|+|+ +.+|++|+.|++|+||++...+.. +...+. .|...|.+++| ++++
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~------------~~~~l~-gh~~~v~~~~~-------~~~~ 92 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD------------LQWSLE-GHQLGVVSVDI-------SHTL 92 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE------------EEEEEC-CCSSCEEEEEE-------CSSS
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee------------eeeeec-cCCCCEEEEEE-------CCCC
Confidence 68999999985 668999999999999999876543 112233 46678888877 6789
Q ss_pred cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
.++++++.|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++ ++.|++|+++. ++... .+..
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~g~~dg~v~i~~~~~-~~~~~----~~~~ 162 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPV-----DAWTLAFSPDSQYLATGTHVGKVNIFGVES-GKKEY----SLDT 162 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTT-----CCCCEEECTTSSEEEEECTTSEEEEEETTT-CSEEE----EEEC
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCCCcEEEEEcCC-CceeE----EecC
Confidence 9999999999999999999999888876544 788999999999999998 99999999997 44444 4667
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
|...+.+++|+|+++ +|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++ .|+.|++||++. +.
T Consensus 163 ~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~-~~ 239 (321)
T 3ow8_A 163 RGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQH-AN 239 (321)
T ss_dssp SSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTT-CC
T ss_pred CCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCC-cc
Confidence 888999999999999 999999999999999999999999999999999999999999999999 899999999997 66
Q ss_pred cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER 316 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~ 316 (334)
....+.+| ...+.+++|+|++++|++++.|++|++||+.++ +.+..+.+|.+.|.+++| +|++
T Consensus 240 ~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~------------~~~~~~~~h~~~v~~v~~--s~~g- 302 (321)
T 3ow8_A 240 LAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR------------TCVHTFFDHQDQVWGVKY--NGNG- 302 (321)
T ss_dssp EEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEE--CTTS-
T ss_pred eeEEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------EEEEEEcCCCCcEEEEEE--CCCC-
Confidence 67777766 667899999999999999999999999999997 788889999999999999 9999
Q ss_pred cceeeEEeeecceeeee
Q psy2305 317 DLLVADATCSGQITNVK 333 (334)
Q Consensus 317 ~~~~~l~t~~~d~~i~~ 333 (334)
++|++++.||+|++
T Consensus 303 ---~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 303 ---SKIVSVGDDQEIHI 316 (321)
T ss_dssp ---SEEEEEETTCCEEE
T ss_pred ---CEEEEEeCCCeEEE
Confidence 99999999999875
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.7e-49 Score=330.63 Aligned_cols=278 Identities=15% Similarity=0.158 Sum_probs=242.1
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|++++|++|+.||+|++||..+++.. ..+. .+...|.+++| +|++++|+
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--------------~~~~-~~~~~v~~~~~-------s~~~~~l~ 113 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--------------HAIP-LRSSWVMTCAY-------APSGNYVA 113 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--------------EEEE-CSSSCEEEEEE-------CTTSSEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--------------eEee-cCCccEEEEEE-------CCCCCEEE
Confidence 57999999999999999999999999999988765 2333 35577888777 67999999
Q ss_pred EeeCCCcEEEEeCCCCe----eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 82 CSSMYAPIHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+++.|+.|++|++.+++ ....+..|.. .|.++.|++++. +++++ |+.|++||+.+ +.... .+.+
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~-~~~~~----~~~~ 182 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTG-----YLSCCRFLDDNQ-IVTSSGDTTCALWDIET-GQQTT----TFTG 182 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEEEEECCSS-----CEEEEEEEETTE-EEEEETTSCEEEEETTT-TEEEE----EECC
T ss_pred EEeCCCeEEEEECccCCCcceeEEEecCCCc-----cEEEEEECCCCc-EEEEECCCcEEEEECCC-CcEEE----EEcC
Confidence 99999999999997653 3445555443 899999999886 55555 99999999986 55444 5788
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
|...|.+++|+|+++ ++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++ .|++|++||++. ..
T Consensus 183 h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~-~~ 259 (340)
T 1got_B 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRA-DQ 259 (340)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-TE
T ss_pred CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCC-Cc
Confidence 999999999999999 999999999999999999999999999999999999999999999999 899999999997 55
Q ss_pred cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER 316 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~ 316 (334)
.+..+........+.+++|+|+|++|++|+.||.|++||+.++ +.+..+.+|.+.|.+++| +|++
T Consensus 260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~--s~dg- 324 (340)
T 1got_B 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------------DRAGVLAGHDNRVSCLGV--TDDG- 324 (340)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEE--CTTS-
T ss_pred EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC------------cEeeEeecCCCcEEEEEE--cCCC-
Confidence 5555554333456889999999999999999999999999987 677889999999999999 9999
Q ss_pred cceeeEEeeecceeeee
Q psy2305 317 DLLVADATCSGQITNVK 333 (334)
Q Consensus 317 ~~~~~l~t~~~d~~i~~ 333 (334)
.+|++|+.|++|++
T Consensus 325 ---~~l~s~s~D~~i~i 338 (340)
T 1got_B 325 ---MAVATGSWDSFLKI 338 (340)
T ss_dssp ---SCEEEEETTSCEEE
T ss_pred ---CEEEEEcCCccEEe
Confidence 99999999999986
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-48 Score=322.59 Aligned_cols=280 Identities=15% Similarity=0.202 Sum_probs=242.3
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|++++|++++.||+|++||+.++... ..+. .+...|.+++| +|++++|+
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--------------~~~~-~~~~~v~~~~~-------~~~~~~l~ 71 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--------------RSIQ-VTETPVRAGKF-------IARKNWII 71 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------------EEEE-CCSSCEEEEEE-------EGGGTEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--------------EEee-ccCCcEEEEEE-------eCCCCEEE
Confidence 67999999999999999999999999999988765 3444 35577888777 66999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+ |++|++||++. +..+.. .+.+|...
T Consensus 72 s~s~d~~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~-~~~~~~---~~~~h~~~ 142 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQ---TFEGHEHF 142 (304)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEGGG-TTEEEE---EECCCCSC
T ss_pred EECCCCEEEEEECCCCcEEEEEeCCCC-----cEEEEEEcCCCCEEEEECCCCeEEEEECCC-Ccchhh---hhcccCCc
Confidence 999999999999999999988887655 899999999999999998 99999999986 433333 57889999
Q ss_pred eEEEEEcCC-CCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCc
Q psy2305 161 VSAIAINPV-HPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSS--NGILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 161 v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
|.+++|+|+ +. +|++|+.|++|++||++++.....+. +|...+..+.|+| ++++|++++ .|++|++||+++ +.
T Consensus 143 v~~v~~~p~~~~-~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~-~~ 219 (304)
T 2ynn_A 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQT-KS 219 (304)
T ss_dssp EEEEEECTTCTT-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTT-TE
T ss_pred EEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCC-Cc
Confidence 999999995 56 99999999999999998887766654 5667899999987 778999999 899999999998 77
Q ss_pred cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER 316 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~ 316 (334)
++..+.+| ...+.+++|+|++++|++++.||+|++||+.++ +.+..+..|...+.+++| +|++.
T Consensus 220 ~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~------------~~~~~~~~~~~~~~~~~~--~~~~~ 283 (304)
T 2ynn_A 220 CVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY------------KVEKTLNVGLERSWCIAT--HPTGR 283 (304)
T ss_dssp EEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------------CEEEEECCSSSSEEEEEE--CTTCG
T ss_pred cceeeCCC--CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC------------ceeeeccCCCccEEEEEE--CCCCC
Confidence 78888877 667888999999999999999999999999998 778888889899999999 98871
Q ss_pred cceeeEEeeecceeeee
Q psy2305 317 DLLVADATCSGQITNVK 333 (334)
Q Consensus 317 ~~~~~l~t~~~d~~i~~ 333 (334)
..++++|+.||.+..
T Consensus 284 --~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 284 --KNYIASGFDNGFTVL 298 (304)
T ss_dssp --GGCEEEEETTEEEEE
T ss_pred --ceEEEEecCCceEEE
Confidence 026999999987653
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.4e-48 Score=326.30 Aligned_cols=279 Identities=12% Similarity=0.116 Sum_probs=240.7
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|++++||+|+.||+|++||..+++.. ..+. .+...|.+++| +|++.+|+
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~--------------~~~~-~~~~~v~~~~~-------sp~g~~la 122 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE--------------HAVT-MPCTWVMACAY-------APSGCAIA 122 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------EEEE-CSSSCCCEEEE-------CTTSSEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc--------------eEEe-cCCCCEEEEEE-------CCCCCEEE
Confidence 57999999999999999999999999999887765 2333 24456777666 77999999
Q ss_pred EeeCCCcEEEEeCCCC------eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305 82 CSSMYAPIHLWDSVGG------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP 154 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 154 (334)
+++.|+.+++|++... .....+..|.. .|.+++|+|++..|++++ |++|++||+++ ++.+. .+
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-~~~~~----~~ 192 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN-----YLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQ----SF 192 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSGGGCEEEEECSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEE----EE
T ss_pred EeeCCCCEEEEEEeccccccccccceeeeccCC-----cEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CeEEE----EE
Confidence 9999999999998643 22344444433 899999999999999887 99999999987 55555 57
Q ss_pred cccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305 155 WFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR 232 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~ 232 (334)
.+|...|.+++|+|+ +. +|++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++ .|++|++||++
T Consensus 193 ~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~ 270 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLR 270 (354)
T ss_dssp ECCSSCEEEEEECCCSSCC-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT
T ss_pred cCCCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECC
Confidence 889999999999884 56 999999999999999999999999999999999999999999999999 89999999998
Q ss_pred CCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccC
Q psy2305 233 NPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH 312 (334)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s 312 (334)
. ...+..+..+.....+.+++|+|++++|++++.|+.|++||+.++ +.+..+.+|.+.|.+++| +
T Consensus 271 ~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------------~~~~~l~~h~~~v~~l~~--s 335 (354)
T 2pbi_B 271 A-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG------------SRVSILFGHENRVSTLRV--S 335 (354)
T ss_dssp T-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------SEEEEECCCSSCEEEEEE--C
T ss_pred C-CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC------------ceEEEEECCCCcEEEEEE--C
Confidence 7 555555554434456788999999999999999999999999887 677888999999999999 9
Q ss_pred CCcccceeeEEeeecceeeee
Q psy2305 313 KFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 313 ~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|++ ++|++|+.|++|++
T Consensus 336 pdg----~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 336 PDG----TAFCSGSWDHTLRV 352 (354)
T ss_dssp TTS----SCEEEEETTSEEEE
T ss_pred CCC----CEEEEEcCCCCEEe
Confidence 999 99999999999975
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=321.19 Aligned_cols=288 Identities=16% Similarity=0.151 Sum_probs=225.2
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.+++|+|||++|++++ |+++++||....... ................+...|.+++| +|++ .|++
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~-~l~~ 98 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK----DPCAAPNEGFCSAGVQTEAGVADLTW-------VGER-GILV 98 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES----SGGGTTCGGGCSEEEEESSCEEEEEE-------ETTT-EEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeec----cccccCCcceeeeeeccCCCEEEEEE-------eCCC-eEEE
Confidence 589999999999998887 677888863211000 00000000011222234567888888 5575 5789
Q ss_pred eeCCCcEEEEeCCCCeeeEEEc--CccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYR--PYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++.||+|+|||+.+++....+. ...|.. .|++++|+|++++|++|+ |+.|++||+.+ ++.+. .+.+|..
T Consensus 99 ~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~---~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~----~~~~h~~ 170 (344)
T 4gqb_B 99 ASDSGAVELWELDENETLIVSKFCKYEHDD---IVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLS----SYRAHAA 170 (344)
T ss_dssp EETTSEEEEEEECTTSSCEEEEEEEECCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE----EECCCSS
T ss_pred EECCCEEEEEeccCCCceeEeeccccCCCC---CEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEE----EEcCcCC
Confidence 9999999999999887654433 112333 899999999999999998 99999999996 55555 5789999
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEEEccC-CcEEEeeecCCCeEEEEEccCCCc
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLEFSSN-GILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
.|.+++|+|++..+|++++.|++|++||+++++....+. .+...+.+++|+|+ +++|++++ .|+.|++||+++ ++
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~-~~ 248 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKS-TS 248 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC---
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCC-Cc
Confidence 999999999987689999999999999999999888774 45567999999995 56888999 899999999998 77
Q ss_pred cceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE 315 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~ 315 (334)
++..+.+| ...+.+++|+|++ ++|++++.|++|+|||+.++ + +..+.+|.+.|++++| +|++
T Consensus 249 ~~~~~~~h--~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~------------~-~~~~~~H~~~V~~v~~--sp~~ 311 (344)
T 4gqb_B 249 CVLSSAVH--SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS------------E-LFRSQAHRDFVRDATW--SPLN 311 (344)
T ss_dssp CCEEEECC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC------------E-EEEECCCSSCEEEEEE--CSSS
T ss_pred EEEEEcCC--CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------------c-EEEEcCCCCCEEEEEE--eCCC
Confidence 78888876 6678999999998 58999999999999999986 3 4467899999999999 9998
Q ss_pred ccceeeEEeeecceeeee
Q psy2305 316 RDLLVADATCSGQITNVK 333 (334)
Q Consensus 316 ~~~~~~l~t~~~d~~i~~ 333 (334)
. .+|+++|.|++|++
T Consensus 312 ~---~llas~s~D~~v~~ 326 (344)
T 4gqb_B 312 H---SLLTTVGWDHQVVH 326 (344)
T ss_dssp T---TEEEEEETTSCEEE
T ss_pred C---eEEEEEcCCCeEEE
Confidence 2 35779999999975
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.1e-47 Score=317.29 Aligned_cols=293 Identities=18% Similarity=0.230 Sum_probs=234.1
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|++++|+|+|++||+|+.|++|+||++.++... ....+...|...|.+++| +|++++|++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------~~~~~~~~h~~~v~~~~~-------sp~g~~l~s 78 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------CKSVLSEGHQRTVRKVAW-------SPCGNYLAS 78 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------EEEEECSSCSSCEEEEEE-------CTTSSEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------eeeeeccccCCcEEEEEE-------CCCCCEEEE
Confidence 6899999999999999999999999999877532 112233457788999888 679999999
Q ss_pred eeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCe-eeeecccccccc
Q psy2305 83 SSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRE-CVSRNLKPWFRK 158 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~ 158 (334)
++.|+.+++|++..+. .+..+..|.. .|.+++|+|++++|++++ |+.|++||++..... ... .+.+|.
T Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~h~ 150 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS---VLNSHT 150 (345)
T ss_dssp EETTSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE---EECCCC
T ss_pred EECCCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE---EecCcC
Confidence 9999999999987764 4566766554 899999999999999998 999999999863221 122 467899
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
..|.+++|+|+++ +|++++.|+.|++||.++++ +...+.+|...|.+++|+|+|++|++++ .|++|++||....+.
T Consensus 151 ~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 151 QDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGN 228 (345)
T ss_dssp SCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTC
T ss_pred CCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCC
Confidence 9999999999999 99999999999999998774 4567889999999999999999999999 899999999864222
Q ss_pred c--------------ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305 237 I--------------LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302 (334)
Q Consensus 237 ~--------------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (334)
. +..+.+ .+...+.+++|+|++..|++++.|+.|++|+.........|. .........+|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~---~~~~~~~~~~h~~ 304 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT---FSLTAHLHQAHSQ 304 (345)
T ss_dssp TTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC---EEEEEEETTSSSS
T ss_pred CccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee---EEEEeeecccccC
Confidence 1 112222 135678899999999999999999999999987653211000 0001122357899
Q ss_pred ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 303 CTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 303 ~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.|++++| +|+++ .+||+||.||+|++
T Consensus 305 ~V~~v~~--~p~~~---~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 305 DVNCVAW--NPKEP---GLLASCSDDGEVAF 330 (345)
T ss_dssp CEEEEEE--CSSST---TEEEEEETTSCEEE
T ss_pred cEeEeEE--eCCCc---eEEEEcCCCCcEEE
Confidence 9999999 99872 38999999999975
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.9e-46 Score=308.28 Aligned_cols=279 Identities=20% Similarity=0.308 Sum_probs=241.9
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|++++|++++.||.|++|+..+++.. ..+. .|...|.+++| +|++++|+
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~~~l~ 81 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------------KTIS-GHKLGISDVAW-------SSDSNLLV 81 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------------EEEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--------------hhhc-cCCCceEEEEE-------cCCCCEEE
Confidence 57999999999999999999999999999888765 3443 45678888888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.|+.|++||+.+++.+..+..+.. .|.+++|+|++++|++++ |+.|++||+++ ++... .+..|..+
T Consensus 82 s~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~----~~~~~~~~ 151 (312)
T 4ery_A 82 SASDDKTLKIWDVSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLK----TLPAHSDP 151 (312)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEE----EECCCSSC
T ss_pred EECCCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEE----EecCCCCc
Confidence 999999999999999999888887655 899999999999999988 99999999986 55544 56788999
Q ss_pred eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH 239 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~ 239 (334)
|.+++|+|+++ +|++++.||.|++||+++++.+..+. .+...+..++|+|++++|++++ .|+.|++||+++ ++.+.
T Consensus 152 v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~ 228 (312)
T 4ery_A 152 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK-GKCLK 228 (312)
T ss_dssp EEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTT-TEEEE
T ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCC-CcEEE
Confidence 99999999999 99999999999999999998877764 4567899999999999999999 899999999997 77777
Q ss_pred eecccccCCceEEEEe-cCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305 240 TFPRQVSTNQRVYFDL-TSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL 318 (334)
Q Consensus 240 ~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~ 318 (334)
.+..+..........+ .+++.+|++++.||.|++||+.++ +.+..+.+|.+.|.+++| +|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~--~p~~--- 291 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK------------EIVQKLQGHTDVVISTAC--HPTE--- 291 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC------------CEEEEECCCSSCEEEEEE--CSSS---
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc------------hhhhhhhccCCcEEEEee--cCcC---
Confidence 7776644433333334 467899999999999999999987 778889999999999999 9999
Q ss_pred eeeEEeee--cceeeee
Q psy2305 319 LVADATCS--GQITNVK 333 (334)
Q Consensus 319 ~~~l~t~~--~d~~i~~ 333 (334)
++|++++ .|++|++
T Consensus 292 -~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 292 -NIIASAALENDKTIKL 307 (312)
T ss_dssp -SEEEEEECTTTCCEEE
T ss_pred -CceEEEEccCCccEEE
Confidence 9999987 6998875
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.3e-47 Score=318.76 Aligned_cols=282 Identities=16% Similarity=0.148 Sum_probs=222.3
Q ss_pred CceeEEEEcCCCcEEEEeeC------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 2 DIEEDVDEAPDGTCLLTNSN------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
..|++++|||||++||+++. |+.|++|+..++.... ........|...|.+++| +|
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~V~~~~~-------s~ 104 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-----------SLCTAGVQTEAGVTDVAW-------VS 104 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----------GGCSEEEECSSCEEEEEE-------ET
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----------eEecccCCCCCCEEEEEE-------cC
Confidence 46899999999999999997 7889999987765431 001222345677999888 56
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCeeeEE--EcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305 76 FTSYFLCSSMYAPIHLWDSVGGEIKAT--YRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 152 (334)
+++ +++++.||+|++||+.+++.... +....|.. .|++++|+|++++|++++ |+.|++||+++ ++...
T Consensus 105 d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~l~sgs~dg~v~iwd~~~-~~~~~---- 175 (357)
T 4g56_B 105 EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDD---IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-KAVLK---- 175 (357)
T ss_dssp TTE-EEEEETTSCEEEC--------CCCCEEECCCSS---CEEEEEECSSSSEEEEEETTSCEEEEETTT-TEEEE----
T ss_pred CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCC---CEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEE----
Confidence 776 55677899999999988765422 22122322 899999999999999988 99999999996 55444
Q ss_pred cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCC-cEEEeeecCCCeEEEE
Q psy2305 153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNG-ILLFSGARKDCEIICW 229 (334)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iw 229 (334)
.+.+|...|++++|+|++..++++++.|+.|++||++++++...+ ..+...+.+++|+|++ .+|++++ .|+.|++|
T Consensus 176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~w 254 (357)
T 4g56_B 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSLV 254 (357)
T ss_dssp EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEEE
T ss_pred EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeEE
Confidence 578899999999999998658999999999999999998876655 4567789999999974 6788899 89999999
Q ss_pred EccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305 230 DLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308 (334)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 308 (334)
|+++ ++.+..+..+ ...+.+++|+|++ ++|++++.|++|+|||++++ +.+. ..+|.+.|++++
T Consensus 255 d~~~-~~~~~~~~~~--~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~------------~~~~-~~~H~~~V~~va 318 (357)
T 4g56_B 255 NIKN-PDSAQTSAVH--SQNITGLAYSYHSSPFLASISEDCTVAVLDADFS------------EVFR-DLSHRDFVTGVA 318 (357)
T ss_dssp ESSC-GGGCEEECCC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC------------EEEE-ECCCSSCEEEEE
T ss_pred ECCC-CcEeEEEecc--ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC------------cEeE-ECCCCCCEEEEE
Confidence 9998 7777777766 6678999999987 68999999999999999987 4443 457999999999
Q ss_pred eccCC-CcccceeeEEeeecceeeee
Q psy2305 309 WKHHK-FERDLLVADATCSGQITNVK 333 (334)
Q Consensus 309 ~~~s~-~~~~~~~~l~t~~~d~~i~~ 333 (334)
| +| ++ .+|+++|.||+|++
T Consensus 319 f--sP~d~----~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 319 W--SPLDH----SKFTTVGWDHKVLH 338 (357)
T ss_dssp E--CSSST----TEEEEEETTSCEEE
T ss_pred E--eCCCC----CEEEEEcCCCeEEE
Confidence 9 98 78 89999999999976
No 10
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-45 Score=314.42 Aligned_cols=291 Identities=19% Similarity=0.266 Sum_probs=233.6
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCc---ceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKL---NYTLKIKEGGIIYDYVWYPKTSSIDGFTS 78 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~s~~~~ 78 (334)
+.|.+++|+|||++||+|+ ++.+++|++.+++....+.......... .......+...|.+++| +|+++
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-------s~dg~ 136 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-------SPDGK 136 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-------CTTSS
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE-------CCCCC
Confidence 4689999999999999986 6789999999988764333221110000 00000011224767666 77999
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
+|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++++ |+.|++||+++ ++... ...+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~-----~~~~ 205 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSL-----TLSI 205 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE-----EEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCC-----CEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEE-----EEEc
Confidence 999999999999999999999888887665 899999999999999987 99999999986 44333 2335
Q ss_pred ccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEee-------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305 158 KNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFL-------KGHNGGITHLEFSSNGILLFSGARKDCEIICW 229 (334)
Q Consensus 158 ~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw 229 (334)
...+.+++|+| +++ +|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|+|++|++++ .|+.|++|
T Consensus 206 ~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~w 283 (393)
T 1erj_A 206 EDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLW 283 (393)
T ss_dssp SSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEE
T ss_pred CCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEE
Confidence 67899999999 777 9999999999999999999887776 57899999999999999999999 89999999
Q ss_pred EccCCC-----------ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec
Q psy2305 230 DLRNPG-----------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS 298 (334)
Q Consensus 230 d~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 298 (334)
|++... .....+.+| ...+.+++|+|++.+|++++.|+.|++||+.++ +++..+.
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~------------~~~~~l~ 349 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------------NPLLMLQ 349 (393)
T ss_dssp EC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC------------CEEEEEE
T ss_pred ECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------eEEEEEC
Confidence 997521 122334444 567889999999999999999999999999998 6788899
Q ss_pred ccccccceeeeccCC------CcccceeeEEeeecceeeee
Q psy2305 299 AHQDCTNGVRWKHHK------FERDLLVADATCSGQITNVK 333 (334)
Q Consensus 299 ~~~~~i~~~~~~~s~------~~~~~~~~l~t~~~d~~i~~ 333 (334)
+|...|.+++| ++ ++ ++||+|+.||+|++
T Consensus 350 ~h~~~v~~v~~--~~~~~~~p~~----~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 350 GHRNSVISVAV--ANGSSLGPEY----NVFATGSGDCKARI 384 (393)
T ss_dssp CCSSCEEEEEE--CSSCTTCTTC----EEEEEEETTSEEEE
T ss_pred CCCCCEEEEEe--cCCcCcCCCC----CEEEEECCCCcEEE
Confidence 99999999998 65 68 89999999999986
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.3e-47 Score=321.68 Aligned_cols=283 Identities=15% Similarity=0.215 Sum_probs=231.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|++++|++|+.|++|+|||+.+++.. ..+.. |...|.+++| +|++++|+
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--------------~~~~~-h~~~v~~~~~-------s~~g~~la 124 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--------------HAIKL-HCPWVMECAF-------APNGQSVA 124 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--------------EEEEC-CCTTCCCCEE-------CTTSSEEE
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--------------eEEec-CCCCEEEEEE-------CCCCCEEE
Confidence 57999999999999999999999999999988765 34443 4456666555 78999999
Q ss_pred EeeCCCcEEEEeCCCCe-------eeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305 82 CSSMYAPIHLWDSVGGE-------IKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 152 (334)
+++.|+.+++||+.+.. ....+..|.. .|.++.|+|++ ..|++++ |++|++||+.+ ++.......
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~-----~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~ 198 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG-----YASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGS 198 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSS-----CCCCCBCCSSSSSCEEEECTTSCEEEECTTT-CCEEEEECC
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCc-----ceEEEEEecCCCCEEEEECCCCcEEEEEcCC-CcEEEEeec
Confidence 99999999999986532 1223344333 78899999975 5688887 99999999997 554432110
Q ss_pred -cccccccceEEEEEcC-CCCcEEEEeecCCeEEEEECC-CCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305 153 -KPWFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDS-DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW 229 (334)
Q Consensus 153 -~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw 229 (334)
...+|...|.+++|++ ++. +|++|+.|+.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++ .|++|++|
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~-~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~lw 276 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNAN-MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCRLF 276 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCC-EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEEEE
T ss_pred ccCCCCccCeEEEEeecCCCC-EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEEEE
Confidence 1267899999999987 566 99999999999999998 4578888999999999999999999999999 89999999
Q ss_pred EccCCCccceeeccccc-----CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee----ccc
Q psy2305 230 DLRNPGCILHTFPRQVS-----TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF----SAH 300 (334)
Q Consensus 230 d~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~ 300 (334)
|+++ +..+..+..+.. ...+.+++|+|+|++|++|+.||.|++||+..+ +....+ .+|
T Consensus 277 d~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~------------~~~~~~~~~~~~h 343 (380)
T 3iz6_a 277 DMRT-GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA------------EMVLNLGTLQNSH 343 (380)
T ss_dssp ETTT-TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC------------CEEEEECCSCSSC
T ss_pred ECCC-CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC------------ceEEEEecccCCC
Confidence 9998 666666554321 123678999999999999999999999999887 444444 679
Q ss_pred ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+.|.+++| +|++ ++|++||.|++|++
T Consensus 344 ~~~v~~l~~--s~dg----~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 344 EGRISCLGL--SSDG----SALCTGSWDKNLKI 370 (380)
T ss_dssp CCCCCEEEE--CSSS----SEEEEECTTSCEEE
T ss_pred CCceEEEEE--CCCC----CEEEEeeCCCCEEE
Confidence 999999999 9999 99999999999976
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-44 Score=304.28 Aligned_cols=295 Identities=17% Similarity=0.215 Sum_probs=230.8
Q ss_pred CceeEEEE-----cC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 2 DIEEDVDE-----AP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 2 d~V~~~~~-----sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
+.|++++| ++ ++++|++|+.|++|++||+...+... ........+. .|...|.+++| +|
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-------~~~~~~~~l~-~h~~~V~~~~~-------~~ 86 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-------YFGIPHKALT-GHNHFVSDLAL-------SQ 86 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-------BSEEEEEEEC-CCSSCEEEEEE-------CS
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-------ccccccchhc-cCCCceEEEEE-------CC
Confidence 67999999 77 99999999999999999987653210 0000112333 46678988887 67
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305 76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP 154 (334)
Q Consensus 76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 154 (334)
++.++++++.|++|++||+.+++.+..+..|.. .|.+++|+|++++|++++ |+.|++||+.. ....... ..
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~-~~ 158 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSSA-EK 158 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEECC-TT
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCCCEEEEEeccC--Cceeeee-cc
Confidence 999999999999999999999999888887655 899999999999999987 99999999973 3322211 23
Q ss_pred cccccceEEEEEcCCC----------CcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305 155 WFRKNIVSAIAINPVH----------PDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC 224 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 224 (334)
..|...|.+++|+|++ . +|++++.|+.|++|| .+.+....+.+|...|.+++|+|+|++|++++ .|+
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs-~dg 235 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDK 235 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTC
T ss_pred cCCCceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEc-CCC
Confidence 4788999999999987 5 899999999999999 45667778899999999999999999999999 899
Q ss_pred eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC--CCCccccccccceeccccc
Q psy2305 225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS--SPYEESVQEPLYKFSAHQD 302 (334)
Q Consensus 225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 302 (334)
.|++||+.........+. ....+.+++|+|++.+++++ .|+.|++||+.++.... .... ..........+|..
T Consensus 236 ~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 310 (343)
T 2xzm_R 236 KLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA-EPITKAEGQKGKNP 310 (343)
T ss_dssp EEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC-CSGGGBTTBCCSCC
T ss_pred eEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec-CcchhhhhhcCCCC
Confidence 999999965344444443 24468899999999888755 57889999998764320 0000 00000112236778
Q ss_pred ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 303 CTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 303 ~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.|.+++| +|++ ++|++|+.||+|++
T Consensus 311 ~v~~~~~--sp~g----~~l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 311 QCTSLAW--NALG----KKLFAGFTDGVIRT 335 (343)
T ss_dssp CEEEEEE--CSSS----CCEEEEETTSEEEE
T ss_pred ceEEEEE--CCCC----CeEEEecCCceEEE
Confidence 8999999 9999 99999999999875
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.5e-45 Score=329.27 Aligned_cols=298 Identities=14% Similarity=0.177 Sum_probs=227.3
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCce--eeeeCCC----------CC--------------------CCCc
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHC--KSVWRPS----------NQ--------------------RPKL 49 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~----------~~--------------------~~~~ 49 (334)
+.|++++|+|+|++||+|+.|++|+|||+.+++.. ..+.... .. ....
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~ 139 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 139 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence 56999999999999999999999999998754321 1111000 00 0000
Q ss_pred ceeeeeeeceeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE
Q psy2305 50 NYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128 (334)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 128 (334)
...+. .|...|.+++| +|++. .|++++.|++|++||..+++....+..|.. .|.+++|+|++++|+
T Consensus 140 ~~~l~-gh~~~v~~v~f-------~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-----~V~~v~fspdg~~la 206 (611)
T 1nr0_A 140 NGNLT-GQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-----FVHSVRYNPDGSLFA 206 (611)
T ss_dssp CBCCC-CCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-----CEEEEEECTTSSEEE
T ss_pred cceec-CCCCCceEEEE-------CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC-----ceEEEEECCCCCEEE
Confidence 01111 23445555555 67876 599999999999999999988888887655 899999999999999
Q ss_pred Eee-CCcEEEEEcCCCCCeeeeec---ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE---------
Q psy2305 129 AGF-LSEVKIFSTDRPGRECVSRN---LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--------- 195 (334)
Q Consensus 129 ~~~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------- 195 (334)
+++ |++|++||+.+ ++...... +...+|...|.+++|+|+++ +|++++.|++|++||+++++.+.
T Consensus 207 s~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 207 STGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp EEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred EEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 988 99999999986 54444210 01127999999999999999 99999999999999998765443
Q ss_pred ----------------------------------eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305 196 ----------------------------------FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241 (334)
Q Consensus 196 ----------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~ 241 (334)
.+.+|...|.+++|+|+|++|++++ .|+.|++||+.+ +.....+
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~-~~~~~~~ 362 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDIST-GISNRVF 362 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-CCEEECS
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCC-Cceeeec
Confidence 3457889999999999999999999 899999999875 2221111
Q ss_pred c-cc----------------------------------------------------------------------------
Q psy2305 242 P-RQ---------------------------------------------------------------------------- 244 (334)
Q Consensus 242 ~-~~---------------------------------------------------------------------------- 244 (334)
. .|
T Consensus 363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~ 442 (611)
T 1nr0_A 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 442 (611)
T ss_dssp SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence 0 00
Q ss_pred ---ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceee
Q psy2305 245 ---VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVA 321 (334)
Q Consensus 245 ---~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~ 321 (334)
.....+.+++|+|+|++|++|+.|++|++||+..+.. ..... .+|...|++++| +|++ ++
T Consensus 443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~----------~~~~~-~~h~~~v~~v~f--spdg----~~ 505 (611)
T 1nr0_A 443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV----------SEVKT-IVHPAEITSVAF--SNNG----AF 505 (611)
T ss_dssp EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE----------EEEEE-EECSSCEEEEEE--CTTS----SE
T ss_pred eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce----------eeeec-cCCCCceEEEEE--CCCC----CE
Confidence 0012356789999999999999999999999987521 12233 678899999999 9999 99
Q ss_pred EEeeecceeeee
Q psy2305 322 DATCSGQITNVK 333 (334)
Q Consensus 322 l~t~~~d~~i~~ 333 (334)
|++++.|+++++
T Consensus 506 las~s~d~~v~~ 517 (611)
T 1nr0_A 506 LVATDQSRKVIP 517 (611)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEcCCCCEEE
Confidence 999999999874
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-45 Score=306.47 Aligned_cols=283 Identities=19% Similarity=0.235 Sum_probs=222.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceee-eeeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTL-KIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
++|++++|+|+ +||+|+.|++|++|++..+... ....+ ...|...|.+++| +|++++|
T Consensus 15 ~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~------------~~~~~~~~~h~~~v~~v~~-------sp~~~~l 73 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT------------LIDVLDETAHKKAIRSVAW-------RPHTSLL 73 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE------------EEEEECTTCCCSCEEEEEE-------CTTSSEE
T ss_pred CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE------------EEEEEecCCccCCEEEEEE-------CCCCCEE
Confidence 57999999998 9999999999999999875422 11233 2237788999888 6699999
Q ss_pred EEeeCCCcEEEEeCCC-------CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCe--eeee
Q psy2305 81 LCSSMYAPIHLWDSVG-------GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRE--CVSR 150 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~--~~~~ 150 (334)
++++.|++|++||+.. .+.+..+..|.. .|.+++|+|++++|++++ |+.|++||++..+.. ...
T Consensus 74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~- 147 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-----EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS- 147 (330)
T ss_dssp EEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE-
T ss_pred EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE-
Confidence 9999999999999853 345566666544 899999999999999998 999999999542322 222
Q ss_pred cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC--CceEeeccCCCCeEEEEEccC--CcEEEeeecCCCeE
Q psy2305 151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG--RPLFFLKGHNGGITHLEFSSN--GILLFSGARKDCEI 226 (334)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~d~~i 226 (334)
.+.+|...|.+++|+|++. +|++++.|++|++||.+++ +++..+.+|.+.|.+++|+|+ +.+|++++ .|++|
T Consensus 148 --~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~D~~v 223 (330)
T 2hes_X 148 --VLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-DDSTV 223 (330)
T ss_dssp --EECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-TTSCE
T ss_pred --EeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-CCCeE
Confidence 4678999999999999999 9999999999999998776 678889999999999999998 67899999 89999
Q ss_pred EEEEccCCC-------ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc-ceec
Q psy2305 227 ICWDLRNPG-------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL-YKFS 298 (334)
Q Consensus 227 ~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 298 (334)
++||++... .....+.. .+...+.+++|++++ +|++++.||.|++||..+++. +.. ..+.
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~----------~~~~~~~~ 291 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW----------KVFAKRAL 291 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE----------EEEEEESC
T ss_pred EEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce----------EEEecccc
Confidence 999997521 12222222 136678999999765 899999999999999877521 122 2335
Q ss_pred cccc-ccceeeeccCC--CcccceeeEEeeecceeeee
Q psy2305 299 AHQD-CTNGVRWKHHK--FERDLLVADATCSGQITNVK 333 (334)
Q Consensus 299 ~~~~-~i~~~~~~~s~--~~~~~~~~l~t~~~d~~i~~ 333 (334)
+|.. .|..++| +| ++ ++||+++.||+|++
T Consensus 292 ~h~~~~v~~v~~--~~~~~~----~~las~s~Dg~v~~ 323 (330)
T 2hes_X 292 CHGVYEINVVKW--LELNGK----TILATGGDDGIVNF 323 (330)
T ss_dssp TTTTSCEEEEEE--C---------CCEEEEETTSEEEE
T ss_pred ccccceEEEEEE--ecCCCc----eEEEEecCCCcEEE
Confidence 6776 8999999 99 68 89999999999975
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.9e-45 Score=302.57 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=234.3
Q ss_pred CceeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
+.|.+++|+|++ ++|++|+.|++|++|++....... ......+. .|...|.+++| +|++++|
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------~~~~~~~~-~h~~~v~~~~~-------s~dg~~l 80 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------GVPVRSFK-GHSHIVQDCTL-------TADGAYA 80 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------EEEEEEEE-CCSSCEEEEEE-------CTTSSEE
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------cccceEEe-CCcccEEEEEE-------CCCCCEE
Confidence 579999999965 899999999999999986543210 00112333 46678888877 7799999
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++++.|++|++||+.+++.+..+..|.. .|.+++|+|++.+|++++ |+.|++||++ +..+. .+.+|..
T Consensus 81 ~s~s~D~~v~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~----~~~~h~~ 149 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLA----TLLGHND 149 (319)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEE----EECCCSS
T ss_pred EEEeCCCEEEEEECCCCCeeEEEccCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEE----EEeccCC
Confidence 9999999999999999999998887665 899999999999999998 9999999997 44444 5778999
Q ss_pred ceEEEEEcCC------CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305 160 IVSAIAINPV------HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233 (334)
Q Consensus 160 ~v~~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~ 233 (334)
.|.++.|+|. +. .+++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++++ .|+.|++||++.
T Consensus 150 ~v~~~~~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd~~~ 227 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSV-TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAA 227 (319)
T ss_dssp CEEEEEECCC------CC-EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT
T ss_pred cEEEEEEccCCCCCCCcc-EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Confidence 9999999985 44 799999999999999999999999999999999999999999999999 899999999997
Q ss_pred CCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee--------cccccccc
Q psy2305 234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF--------SAHQDCTN 305 (334)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~ 305 (334)
++.+..+.. ...+.+++|+|++.+|++++.+ .+++|++.... .+..+ ..|...+.
T Consensus 228 -~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~ 290 (319)
T 3frx_A 228 -KKAMYTLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQY------------LVDDLRPEFAGYSKAAEPHAV 290 (319)
T ss_dssp -TEEEEEEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEE------------EEEEECCCCTTCCGGGCCCEE
T ss_pred -CcEEEEecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCe------------eeeccCccccccccCcCccee
Confidence 666666654 3568899999999999988755 59999998752 22222 23556789
Q ss_pred eeeeccCCCcccceeeEEeeecceeeee
Q psy2305 306 GVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 306 ~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+++| +|++ ++|++|+.||.|++
T Consensus 291 ~~~~--spdg----~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 291 SLAW--SADG----QTLFAGYTDNVIRV 312 (319)
T ss_dssp EEEE--CTTS----SEEEEEETTSCEEE
T ss_pred EEEE--CCCC----CEEEEeecCceEEE
Confidence 9999 9999 99999999999875
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-44 Score=324.45 Aligned_cols=294 Identities=16% Similarity=0.193 Sum_probs=229.4
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|||++||+++.|++|++||+.+++....+.... .....|...|.+++| +|++++|+
T Consensus 191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--------~~~~~h~~~V~~v~~-------spdg~~l~ 255 (611)
T 1nr0_A 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--------LKNVAHSGSVFGLTW-------SPDGTKIA 255 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--------SSSCSSSSCEEEEEE-------CTTSSEEE
T ss_pred CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc--------ccccccCCCEEEEEE-------CCCCCEEE
Confidence 469999999999999999999999999998887652110000 000146788999888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCcc--------------------------------------ccccccceeEEEEcCC
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYN--------------------------------------QVDEVTHAYSLAFSLD 123 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------~~~~~~~v~~~~~~~~ 123 (334)
+++.|++|++||+.+++.+..+.... ...+...|++++|+|+
T Consensus 256 s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd 335 (611)
T 1nr0_A 256 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD 335 (611)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence 99999999999999887766553210 0112237999999999
Q ss_pred CCEEEEee-CCcEEEEEcCCCCCeeeeec---------------------------------------------------
Q psy2305 124 GNKIYAGF-LSEVKIFSTDRPGRECVSRN--------------------------------------------------- 151 (334)
Q Consensus 124 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~--------------------------------------------------- 151 (334)
+++|++++ |+.|++||+.+ +.......
T Consensus 336 g~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 414 (611)
T 1nr0_A 336 GKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 414 (611)
T ss_dssp SSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred CCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence 99999998 99999999875 22111000
Q ss_pred ---------------------------ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEeeccCCC
Q psy2305 152 ---------------------------LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNG 202 (334)
Q Consensus 152 ---------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~ 202 (334)
+....|...+.+++|+|+|+ +|++|+.|++|++||+.+++. ... .+|..
T Consensus 415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~ 492 (611)
T 1nr0_A 415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPA 492 (611)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEE-EECSS
T ss_pred cEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC-EEEEeCCCCeEEEEEccCCceeeeec-cCCCC
Confidence 00001234578999999999 999999999999999977643 233 67999
Q ss_pred CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee-ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305 203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT-FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL 281 (334)
Q Consensus 203 ~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 281 (334)
.|.+++|+|+|++|++++ .|++|++||+.+.++.... ... .+...+.+++|+|+|++|++++.|++|++||+..+.
T Consensus 493 ~v~~v~fspdg~~las~s-~d~~v~~w~~~~~~~~~~~~~~~-~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~- 569 (611)
T 1nr0_A 493 EITSVAFSNNGAFLVATD-QSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS- 569 (611)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT-
T ss_pred ceEEEEECCCCCEEEEEc-CCCCEEEEEcCCCCceeeeeeee-ecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc-
Confidence 999999999999999999 8999999999863333332 111 136789999999999999999999999999998863
Q ss_pred CCCCCcccccccc-ceeccc-ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 282 PSSPYEESVQEPL-YKFSAH-QDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 282 ~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.. ..+.+| ...|.+++| +|++ + |++++.|++|++
T Consensus 570 ----------~~~~~~~~~h~~~~v~~v~f--s~d~----~-l~s~~~D~~i~l 606 (611)
T 1nr0_A 570 ----------DHPIIIKGAHAMSSVNSVIW--LNET----T-IVSAGQDSNIKF 606 (611)
T ss_dssp ----------SCCEEETTSSTTSCEEEEEE--EETT----E-EEEEETTSCEEE
T ss_pred ----------cccchhhccCcccCeeEEEE--cCCC----E-EEEecCCCCEEE
Confidence 223 566788 789999999 9999 8 999999999975
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-43 Score=318.92 Aligned_cols=271 Identities=20% Similarity=0.287 Sum_probs=239.1
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|++++|++++.|+.|++||....... .+. .+...+.+++| +|++++|+
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~---------------~~~-~~~~~v~~~~~-------s~~g~~l~ 360 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ---------------TLT-GHSSSVWGVAF-------SPDGQTIA 360 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE---------------EEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE---------------EEe-CCCCCEEEEEE-------CCCCCEEE
Confidence 46899999999999999999999999998765542 333 35577887777 77999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.|+.|++||. +++.+..+..+.. .|.+++|+|++++|++++ |+.|++||.. ++.+. .+.+|...
T Consensus 361 ~~~~dg~v~~~~~-~~~~~~~~~~~~~-----~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~----~~~~~~~~ 428 (577)
T 2ymu_A 361 SASDDKTVKLWNR-NGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQ----TLTGHSSS 428 (577)
T ss_dssp EEETTSEEEEEET-TCCEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEE----EEECCSSC
T ss_pred EEeCCCEEEEEcC-CCCEEEEecCCCC-----CeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEE----EecCCCCC
Confidence 9999999999995 6677777776554 899999999999999987 9999999965 55555 57889999
Q ss_pred eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~ 240 (334)
|++++|+|+++ +|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||.. ++.+..
T Consensus 429 v~~~~~s~d~~-~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~-~d~~i~iw~~~--~~~~~~ 503 (577)
T 2ymu_A 429 VWGVAFSPDDQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRN--GQLLQT 503 (577)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEE-TTSEEEEEETT--SCEEEE
T ss_pred eEEEEECCCCC-EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCEEEEEcCC--CCEEEE
Confidence 99999999999 9999999999999996 6788889999999999999999999999999 89999999964 677788
Q ss_pred ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305 241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV 320 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~ 320 (334)
+.+| ...+.+++|+|+|++|++++.||.|++||.. + +.+..+.+|.+.|++++| +||+ +
T Consensus 504 ~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~------------~~~~~~~~h~~~v~~~~f--s~dg----~ 562 (577)
T 2ymu_A 504 LTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G------------QLLQTLTGHSSSVWGVAF--SPDG----Q 562 (577)
T ss_dssp EECC--SSCEEEEEECTTSSCEEEEETTSEEEEECTT-S------------CEEEEEECCSSCEEEEEE--CTTS----S
T ss_pred EeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C------------CEEEEEcCCCCCEEEEEE--cCCC----C
Confidence 8776 6678999999999999999999999999964 3 678889999999999999 9999 9
Q ss_pred eEEeeecceeeee
Q psy2305 321 ADATCSGQITNVK 333 (334)
Q Consensus 321 ~l~t~~~d~~i~~ 333 (334)
+|+|++.|++|++
T Consensus 563 ~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 563 TIASASSDKTVKL 575 (577)
T ss_dssp CEEEEETTSCEEE
T ss_pred EEEEEeCCCEEEE
Confidence 9999999999875
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.7e-43 Score=293.21 Aligned_cols=246 Identities=13% Similarity=0.104 Sum_probs=202.1
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
..|.+++|+|++ +|++|+.||+|+|||+.+++... .......+|...|++++| +|++++|+
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~-----------~~~~~~~~H~~~V~~v~~-------spdg~~l~ 143 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDSGAVELWELDENETLI-----------VSKFCKYEHDDIVSTVSV-------LSSGTQAV 143 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------EEEEEEECCSSCEEEEEE-------CTTSSEEE
T ss_pred CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------EeeccccCCCCCEEEEEE-------CCCCCEEE
Confidence 358999999986 68899999999999999887541 011222356788999888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++.|++|++||+.+++.+..+..|.. .|.+++|+|++. +|++++ |+.|++||+++ ++..... ....+..
T Consensus 144 sgs~d~~i~iwd~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~--~~~~~~~ 215 (344)
T 4gqb_B 144 SGSKDICIKVWDLAQQVVLSSYRAHAA-----QVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQI--GCSAPGY 215 (344)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEEC--C----CC
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCcCC-----ceEEEEecCCCCCceeeeccccccccccccc-cceeeee--ecceeec
Confidence 999999999999999999999987665 899999999985 677777 99999999997 4444421 2345667
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCccc
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
.+.+++|+|++..+|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++ .|++|++||+++ ++ +
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~-~~-~ 292 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSL-SE-L 292 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTC-CE-E
T ss_pred cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCC-Cc-E
Confidence 899999999765589999999999999999999999999999999999999998 5789999 899999999986 54 3
Q ss_pred eeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCC
Q psy2305 239 HTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 279 (334)
..+.+| ...+.+++|+|+++ +|++++.|++|++|++.+.
T Consensus 293 ~~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 293 FRSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 445555 67899999999986 5678999999999999885
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.2e-43 Score=291.81 Aligned_cols=239 Identities=15% Similarity=0.204 Sum_probs=212.5
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
..|.+++|+|++.++++++.|++|++||+.+++.. ..+.. +...+.+++| +|++++|+
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~--------------~~~~~-~~~~~~~~~~-------spdg~~l~ 138 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI--------------KSIDA-GPVDAWTLAF-------SPDSQYLA 138 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------------EEEEC-CTTCCCCEEE-------CTTSSEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE--------------EEEeC-CCccEEEEEE-------CCCCCEEE
Confidence 46899999999999999999999999999988765 23332 3345555555 78999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.|+.|++|++.+++....+..+.. .|.+++|+|++++|++++ |+.|++||+++ ++.+. .+.+|..+
T Consensus 139 ~g~~dg~v~i~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~----~~~~h~~~ 208 (321)
T 3ow8_A 139 TGTHVGKVNIFGVESGKKEYSLDTRGK-----FILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLH----TLEGHAMP 208 (321)
T ss_dssp EECTTSEEEEEETTTCSEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE----EECCCSSC
T ss_pred EEcCCCcEEEEEcCCCceeEEecCCCc-----eEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEE----EEcccCCc
Confidence 999999999999999988887776554 799999999999999998 99999999986 55554 57889999
Q ss_pred eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~ 240 (334)
|.+++|+|+++ +|++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++ .|++|++||+++ +.++..
T Consensus 209 v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~-~~~~~~ 285 (321)
T 3ow8_A 209 IRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGT-RTCVHT 285 (321)
T ss_dssp CCEEEECTTSC-EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-TEEEEE
T ss_pred eeEEEEcCCCC-EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCC-CEEEEE
Confidence 99999999999 999999999999999999999999999999999999999999999999 899999999998 777888
Q ss_pred ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305 241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN 277 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 277 (334)
+..| ...+.+++|+|++++|++++.||.|++||..
T Consensus 286 ~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 286 FFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECCC--SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 8776 6678999999999999999999999999964
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-42 Score=291.83 Aligned_cols=280 Identities=16% Similarity=0.155 Sum_probs=241.2
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|++++|+|++++|++++.||.|++||+.+++.. ..+. .|...|.+++| +|++++|+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~~~l~ 90 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--------------GTLD-GHTGTIWSIDV-------DCFTKYCV 90 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--------------EEEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--------------hhhh-hcCCcEEEEEE-------cCCCCEEE
Confidence 57999999999999999999999999999988765 3443 35678988888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCCCCeeeee-----
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRPGRECVSR----- 150 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~----- 150 (334)
+++.|+.|++||+.+++.+..+.. .. .+.+++|+|++++|+++. + +.|++||+..........
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~~~~-~~-----~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVATWKS-PV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEEEEC-SS-----CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred EEeCCCeEEEEECCCCcEEEEeec-CC-----CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 999999999999999998888772 32 899999999999999886 7 999999998632211000
Q ss_pred -ccccccccc--ceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305 151 -NLKPWFRKN--IVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEI 226 (334)
Q Consensus 151 -~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 226 (334)
......|.. .+.+++|+|+++ +|++++.||.|++||+++ .+.+..+..|...|.+++|+|++++|++++ .|+.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i 242 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-RDTNS 242 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEE
T ss_pred eeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-CCceE
Confidence 002334444 899999999999 999999999999999998 688888999999999999999999999999 89999
Q ss_pred EEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC--------------cEEEEeCCCCCCCCCCCcccccc
Q psy2305 227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG--------------DLSIWNVNTSNLPSSPYEESVQE 292 (334)
Q Consensus 227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~ 292 (334)
++||+++ +..+..+. ....+..++|+|+++++++++.++ .+++||+.++ +
T Consensus 243 ~v~d~~~-~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------------~ 306 (369)
T 3zwl_B 243 FLVDVST-LQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE------------E 306 (369)
T ss_dssp EEEETTT-CCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC------------C
T ss_pred EEEECCC-Cceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC------------c
Confidence 9999997 66666665 356788899999999999999888 8999999998 7
Q ss_pred ccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 293 PLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 293 ~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+..+.+|...|.+++| +|++ ++|++++.||.|++
T Consensus 307 ~~~~~~~~~~~v~~~~~--s~~~----~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 307 EIGRVQGHFGPLNTVAI--SPQG----TSYASGGEDGFIRL 341 (369)
T ss_dssp EEEEEECCSSCEEEEEE--CTTS----SEEEEEETTSEEEE
T ss_pred chhheecccCcEEEEEE--CCCC----CEEEEEcCCCeEEE
Confidence 78889999999999999 9999 99999999999875
No 21
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-42 Score=294.63 Aligned_cols=278 Identities=12% Similarity=0.099 Sum_probs=227.9
Q ss_pred CceeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecC-CCc
Q psy2305 2 DIEEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDG-FTS 78 (334)
Q Consensus 2 d~V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~-~~~ 78 (334)
+.|.+++|+|++ ++|++|+.||.|+|||+.+++.. ..+. ..|...|.+++| +| +++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~~~~h~~~v~~~~~-------~~~~~~ 132 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT--------------SFIQGMGPGDAITGMKF-------NQFNTN 132 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--------------EEECCCSTTCBEEEEEE-------ETTEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--------------eeeecCCcCCceeEEEe-------CCCCCC
Confidence 579999999999 89999999999999999987765 2333 247788999888 56 678
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
+|++++.|+.|++||+.+ .....+..+. .....|.+++|+|++++|++++ |+.|++||++ ++... .+..|
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~----~~~~h 203 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIF----KEKLH 203 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEE----EEECS
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEeccC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEE----EeccC
Confidence 999999999999999986 4444554422 1112799999999999999988 9999999995 55555 57789
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCC----CCceEeeccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEcc
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSD----GRPLFFLKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLR 232 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~ 232 (334)
...|.+++|+|+++.++++++.|+.|++||+++ +..+..+ +|...|.+++|+| ++++|++++ .|+.|++||++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~ 281 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSY 281 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEETT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEECC
Confidence 999999999999987899999999999999987 5566666 6999999999999 999999999 89999999999
Q ss_pred CCCccceeeccccc---------------CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305 233 NPGCILHTFPRQVS---------------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF 297 (334)
Q Consensus 233 ~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 297 (334)
+ +.....+..+.. ......++|+|++++ +++.|+.|++||+.++ +.+..+
T Consensus 282 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~------------~~~~~l 346 (383)
T 3ei3_B 282 D-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG------------GLVHQL 346 (383)
T ss_dssp B-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC------------CEEEEE
T ss_pred C-CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC------------ceeeee
Confidence 7 555455543321 134455778888887 8889999999999998 677777
Q ss_pred cc--cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 298 SA--HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 298 ~~--~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+ |...+..++| +|++ ++|++++ |+.|++
T Consensus 347 ~~~~~~~~~~~~~~--s~~g----~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 347 RDPNAAGIISLNKF--SPTG----DVLASGM-GFNILI 377 (383)
T ss_dssp CBTTBCSCCCEEEE--CTTS----SEEEEEE-TTEEEE
T ss_pred cCCCCCceEEEEEE--ecCc----cEEEEec-CCcEEE
Confidence 76 4567777899 9999 9999997 898875
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.9e-42 Score=286.39 Aligned_cols=277 Identities=13% Similarity=0.125 Sum_probs=232.1
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
+.|.+++|+|++++|++++ ||.|++|++.++.... ....+. ..+...|.+++| +|++++|
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~-------~~~~~~l 112 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------PVSQLDCLNRDNYIRSCKL-------LPDGCTL 112 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------CSEEEECSCTTSBEEEEEE-------CTTSSEE
T ss_pred CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee-----------eeecccccCCCCcEEEEEE-------cCCCCEE
Confidence 4689999999999999998 9999999998765431 001111 146678888888 6799999
Q ss_pred EEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305 81 LCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
++++.|+.|++||+.+++ ....+..+.. .|.+++|+|++++|++++ |+.|++||+++ ++... .+..|
T Consensus 113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~----~~~~~ 182 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVR----QFQGH 182 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE----EECCC
T ss_pred EEEcCCCcEEEEECCCCCcceeeecccCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceee----eeecc
Confidence 999999999999998877 4444554433 799999999999999887 99999999986 44444 46779
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~ 237 (334)
...+.+++|+|+++ +|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++ .++.|++||++. ..
T Consensus 183 ~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~-~~- 257 (337)
T 1gxr_A 183 TDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNK-PD- 257 (337)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTS-SC-
T ss_pred cCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCC-CC-
Confidence 99999999999999 99999999999999999998887775 778899999999999999999 899999999987 43
Q ss_pred ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccc
Q psy2305 238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERD 317 (334)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~ 317 (334)
...+..+ ...+.+++|+|++++|++++.||.|++||+.++ +.+ ....|...|.+++| +|++
T Consensus 258 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~------------~~~-~~~~~~~~v~~~~~--s~~~-- 318 (337)
T 1gxr_A 258 KYQLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG------------ASI-FQSKESSSVLSCDI--SVDD-- 318 (337)
T ss_dssp EEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------------CEE-EEEECSSCEEEEEE--CTTS--
T ss_pred eEEEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEECCCC------------eEE-EEecCCCcEEEEEE--CCCC--
Confidence 3344444 667899999999999999999999999999987 444 33457788999999 9999
Q ss_pred ceeeEEeeecceeeee
Q psy2305 318 LLVADATCSGQITNVK 333 (334)
Q Consensus 318 ~~~~l~t~~~d~~i~~ 333 (334)
++|++++.||.+++
T Consensus 319 --~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 319 --KYIVTGSGDKKATV 332 (337)
T ss_dssp --CEEEEEETTSCEEE
T ss_pred --CEEEEecCCCeEEE
Confidence 99999999999875
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4e-42 Score=314.76 Aligned_cols=284 Identities=17% Similarity=0.229 Sum_probs=231.7
Q ss_pred CceeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
+.|++++|+|++ ++|++|+.|++|++|++.+..... ......+. .|...|.+++| +|++++|
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~---------~~~~~~~~-~h~~~v~~v~~-------s~~g~~l 445 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY---------GVAQRRLT-GHSHFVEDVVL-------SSDGQFA 445 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS---------CEEEEEEE-CCSSCEEEEEE-------CTTSSEE
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc---------ccccceec-CCCCcEEEEEE-------CCCCCEE
Confidence 679999999975 799999999999999998654210 00112333 46678988887 6799999
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++|+.|+.|++||+.+++....+..|.. .|.+++|+|++++|++++ |++|++||+.. ...........+|..
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVGHTK-----DVLSVAFSLDNRQIVSASRDRTIKLWNTLG--ECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECSSTTSCSS
T ss_pred EEEeCCCcEEEEECCCCcceeEEeCCCC-----CEEEEEEeCCCCEEEEEeCCCEEEEEECCC--CcceeeccCCCCCCC
Confidence 9999999999999999999888887655 899999999999999998 99999999874 322221113457889
Q ss_pred ceEEEEEcCCCC-cEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 160 IVSAIAINPVHP-DICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 160 ~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
.|.+++|+|++. ..+++++.|+.|++||+++++....+.+|.+.|.+++|+|++++|++++ .|+.|++||+++ ++.+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd~~~-~~~~ 596 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLAE-GKKL 596 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEETTT-TEEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCC-CceE
Confidence 999999999872 2899999999999999999999999999999999999999999999999 899999999997 6655
Q ss_pred eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc-------------------
Q psy2305 239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA------------------- 299 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------------- 299 (334)
..+.. ...+.+++|+|++.+|++++ ++.|++||++++. .+..+..
T Consensus 597 ~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (694)
T 3dm0_A 597 YSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS------------IVEDLKVDLKAEAEKADNSGPAATKR 660 (694)
T ss_dssp ECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE------------EEEEECCCCC----------------
T ss_pred EEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC------------ChhhhccccccccccccccccccCCc
Confidence 55543 45688899999998888765 5669999999873 3322221
Q ss_pred cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 300 HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 300 ~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+...+++++| +|++ ++|++|+.||+|++
T Consensus 661 ~~~~~~~l~~--spdg----~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 661 KVIYCTSLNW--SADG----STLFSGYTDGVIRV 688 (694)
T ss_dssp CCCCEEEEEE--CTTS----SEEEEEETTSEEEE
T ss_pred eeEEeeeEEE--cCCC----CEEEEEcCCCeEEE
Confidence 1123688999 9999 99999999999975
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-42 Score=298.55 Aligned_cols=239 Identities=18% Similarity=0.272 Sum_probs=213.4
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|+|++|++|+.|++|++||+.+.+.. ..+. .|...|.+++| +|++++|+
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--------------~~~~-~h~~~V~~v~~-------~p~~~~l~ 208 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--------------RTMH-GHDHNVSSVSI-------MPNGDHIV 208 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--------------ECCC-CCSSCEEEEEE-------CSSSSEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--------------EEEc-CCCCCEEEEEE-------eCCCCEEE
Confidence 57999999999999999999999999999887765 2343 35678988888 66999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.|+.|++||+.++..+..+..|.. .|.++.|+|++++|++++ |+.|++||+.+ +.... .+.+|...
T Consensus 209 s~s~D~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~----~~~~h~~~ 278 (410)
T 1vyh_C 209 SASRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKA----ELREHRHV 278 (410)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEE----EECCCSSC
T ss_pred EEeCCCeEEEEECCCCcEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCCCeEEEEECCC-Cceee----EecCCCce
Confidence 999999999999999999988887654 899999999999999988 99999999986 44444 57789999
Q ss_pred eEEEEEcCC--------------------CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305 161 VSAIAINPV--------------------HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220 (334)
Q Consensus 161 v~~~~~~~~--------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 220 (334)
|.+++|+|+ +. +|++|+.|+.|++||+++++++..+.+|...|.+++|+|+|++|++++
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence 999999996 55 899999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN 277 (334)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 277 (334)
.|+.|++||+++ ++.+..+..| ...+.+++|+|++.+|++|+.||.|++|+++
T Consensus 358 -~D~~i~vwd~~~-~~~~~~~~~h--~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 358 -DDKTLRVWDYKN-KRCMKTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp -TTTEEEEECCTT-SCCCEEEECC--SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred -CCCeEEEEECCC-CceEEEEcCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 899999999987 7777888776 6679999999999999999999999999864
No 25
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.4e-41 Score=285.14 Aligned_cols=291 Identities=17% Similarity=0.213 Sum_probs=232.0
Q ss_pred CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
++|++|+|+|+ +++||||+.|++|+|||+.+.+... ......+. .|...|.+++| +|++++|
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---------~~~~~~l~-~h~~~V~~~~~-------s~dg~~l 101 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---------GIPQRALR-GHSHFVSDVVI-------SSDGQFA 101 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------EEEEEEEC-CCSSCEEEEEE-------CTTSSEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------ceeeEEEe-CCCCCEEEEEE-------CCCCCEE
Confidence 57999999997 6899999999999999998765321 00112333 35678988888 6799999
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++++.|+.|++|+............+.. .+..+.+++++++|++++ |+.+++||+.. ...... ...+|..
T Consensus 102 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~-~~~~~~---~~~~~~~ 172 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTK-----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTV---QDESHSE 172 (340)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEE---CSSSCSS
T ss_pred EEEcccccceEEeecccceeeeecCCCC-----ceeEEEEeecCccceeecCCCeEEEEEeCC-CceEEE---EeccccC
Confidence 9999999999999998888777665544 788999999999999987 99999999985 222222 5678899
Q ss_pred ceEEEEEcCCCC-cEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 160 IVSAIAINPVHP-DICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 160 ~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
.+..++|++++. .++++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++|++++ .|+.|++||++. ...+
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~~-~~~~ 250 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNE-GKHL 250 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT-TEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEecc-Ccee
Confidence 999999998764 2678899999999999999999999999999999999999999999999 899999999997 6666
Q ss_pred eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305 239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL 318 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~ 318 (334)
..+.. ...+.++.|+|++.++ +++.|+.|++||++++...... ..........+|...|++++| +|++
T Consensus 251 ~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~--s~dg--- 318 (340)
T 4aow_A 251 YTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDEL---KQEVISTSSKAEPPQCTSLAW--SADG--- 318 (340)
T ss_dssp EEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEE---CCC-------CCCCCEEEEEE--CTTS---
T ss_pred eeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEec---cccceeeeccCCCCCEEEEEE--CCCC---
Confidence 66654 3567889999987655 5567999999999876221000 000112234568889999999 9999
Q ss_pred eeeEEeeecceeeee
Q psy2305 319 LVADATCSGQITNVK 333 (334)
Q Consensus 319 ~~~l~t~~~d~~i~~ 333 (334)
++|++|+.||.|++
T Consensus 319 -~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 319 -QTLFAGYTDNLVRV 332 (340)
T ss_dssp -SEEEEEETTSCEEE
T ss_pred -CEEEEEeCCCEEEE
Confidence 99999999999975
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3e-42 Score=284.73 Aligned_cols=243 Identities=15% Similarity=0.180 Sum_probs=211.4
Q ss_pred eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305 51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130 (334)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (334)
..+.+ |.+.|.+++| +|++++|++++.||.|++||+.+++.+..+..+.. +|.+++|+|++++|++|
T Consensus 7 ~~~~~-h~~~V~~~~f-------sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 7 KTFSN-RSDRVKGIDF-------HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVG 73 (304)
T ss_dssp EEEEE-ECSCEEEEEE-------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEE
T ss_pred EeecC-CCCceEEEEE-------CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-----cEEEEEEeCCCCEEEEE
Confidence 45554 5678998888 77999999999999999999999999888887655 89999999999999999
Q ss_pred e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEE
Q psy2305 131 F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLE 208 (334)
Q Consensus 131 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~ 208 (334)
+ |+.|++||+.+ ++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||++++ .....+.+|...|.+++
T Consensus 74 s~d~~i~vwd~~~-~~~~~----~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 74 SDDFRIRVFNYNT-GEKVV----DFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp ETTSEEEEEETTT-CCEEE----EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred CCCCEEEEEECCC-CcEEE----EEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 8 99999999997 55555 5788999999999999999 9999999999999999887 45567889999999999
Q ss_pred Ecc-CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecC--CCceEEeeecCCcEEEEeCCCCCCCCCC
Q psy2305 209 FSS-NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS--CSNYLLSGNTNGDLSIWNVNTSNLPSSP 285 (334)
Q Consensus 209 ~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 285 (334)
|+| ++.+|++++ .|++|++||++. ......+..+ +...+..+.|+| ++.+|++++.|+.|++||++++
T Consensus 148 ~~p~~~~~l~sgs-~D~~v~iwd~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------ 218 (304)
T 2ynn_A 148 FNPKDPSTFASGC-LDRTVKVWSLGQ-STPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------ 218 (304)
T ss_dssp ECTTCTTEEEEEE-TTSEEEEEETTC-SSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT------
T ss_pred ECCCCCCEEEEEe-CCCeEEEEECCC-CCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------
Confidence 999 678999999 899999999987 4444444332 234566677765 7889999999999999999997
Q ss_pred CccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.+..+.+|...|..++| +|++ ++|++++.||+|++
T Consensus 219 ------~~~~~~~~h~~~v~~~~~--~p~~----~~l~s~s~Dg~i~i 254 (304)
T 2ynn_A 219 ------SCVATLEGHMSNVSFAVF--HPTL----PIIISGSEDGTLKI 254 (304)
T ss_dssp ------EEEEEEECCSSCEEEEEE--CSSS----SEEEEEETTSCEEE
T ss_pred ------ccceeeCCCCCCEEEEEE--CCCC----CEEEEEcCCCeEEE
Confidence 788899999999999999 9999 99999999999975
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.2e-42 Score=291.18 Aligned_cols=296 Identities=13% Similarity=0.095 Sum_probs=234.9
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCC--ceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSEL--HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY 79 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~ 79 (334)
++|.+++|+|++++|++++.|+.|++|++.+++ .. ..+. .|...|.+++| +|++++
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~~~ 66 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV--------------HELK-EHNGQVTGVDW-------APDSNR 66 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE--------------EEEE-CCSSCEEEEEE-------ETTTTE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee--------------eeec-CCCCcccEEEE-------eCCCCE
Confidence 579999999999999999999999999998875 32 2343 46678988888 669999
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCe--eeeecccccc
Q psy2305 80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRE--CVSRNLKPWF 156 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~ 156 (334)
|++++.|+.|++||+.+++....+....+.. .|.+++|+|++++|++++ |+.|++||++..... ... ....
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~ 140 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINR---AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH---IKKP 140 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEECCCCSS---CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE---ECTT
T ss_pred EEEEcCCCeEEEEECCCCeeeeeEEeecCCC---ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee---eecc
Confidence 9999999999999998887665554333333 899999999999999987 999999999973321 221 3467
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEEC------------------CCCCceEeeccCCCCeEEEEEccCCcEEEe
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSD------------------SDGRPLFFLKGHNGGITHLEFSSNGILLFS 218 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 218 (334)
|...|.+++|+|+++ +|++++.||.|++||+ ..++.+..+.+|...|.+++|+|++++|++
T Consensus 141 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp CCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred cCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence 889999999999999 9999999999999995 367788888899999999999999999999
Q ss_pred eecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC--CCCC--CCCCc-------
Q psy2305 219 GARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT--SNLP--SSPYE------- 287 (334)
Q Consensus 219 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~--~~~~~------- 287 (334)
++ .|+.|++||+++ ++.+..+..+ ...+.+++|+|++++|+++ .|+.|++|++.. +... ...+.
T Consensus 220 ~~-~d~~i~i~d~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
T 1k8k_C 220 VS-HDSTVCLADADK-KMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 294 (372)
T ss_dssp EE-TTTEEEEEEGGG-TTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred Ee-CCCEEEEEECCC-CceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence 99 899999999998 6777777765 5678899999999999888 899999999987 3100 00000
Q ss_pred -----------ccccccc------cee-cccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 288 -----------ESVQEPL------YKF-SAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 288 -----------~~~~~~~------~~~-~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+...+.. ..+ .+|...|++++| .+....+..+|++++.||.|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~g~~~~~l~s~~~Dg~i~~ 356 (372)
T 1k8k_C 295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV--LSGGKAKCSQFCTTGMDGGMSI 356 (372)
T ss_dssp --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEE--EESTTTSCSEEEEEETTSEEEE
T ss_pred hcchhhhhhhcccccccccCccccccccccccCCcceeEE--ecCCCcceeeEEEecCCCceEE
Confidence 0000111 233 489999999997 6432011158999999999975
No 28
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-42 Score=301.61 Aligned_cols=282 Identities=15% Similarity=0.144 Sum_probs=218.0
Q ss_pred CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcE
Q psy2305 2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSY 79 (334)
Q Consensus 2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~ 79 (334)
+.|+||+|+| ++++||+|+.||.|+|||+.+++.. ..+. .+|.+.|.+++|+|. ++++
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~--------------~~~~~~gH~~~V~~l~f~p~------~~~~ 179 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP--------------TFIKGIGAGGSITGLKFNPL------NTNQ 179 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC--------------EEECCCSSSCCCCEEEECSS------CTTE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce--------------eEEEccCCCCCEEEEEEeCC------CCCE
Confidence 3599999999 5679999999999999999877653 1222 246788999888442 6889
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
|++++.||+|++||++++........+.... .+.+++|+|++++|++|+ ||.|++||++ ++.+. .+.+|.
T Consensus 180 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~----~~~~h~ 250 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNILRVFASSDTINI---WFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELW----NLRMHK 250 (435)
T ss_dssp EEEECSSSCEEEEETTSCEEEEEECCSSCSC---CCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCC----CSBCCS
T ss_pred EEEEeCCCEEEEeeccCCceeEEeccCCCCc---cEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeE----EEeccc
Confidence 9999999999999998765544433322222 678999999999999998 9999999997 44444 578899
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe---eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF---LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~ 235 (334)
..|++++|+|+++.++++++.|+.|++||+++.+.... ..+|...|.+++|+|+|++|++++ .|+.|++||++. +
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~-~ 328 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQ-W 328 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSS-S
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCC-C
Confidence 99999999999886888999999999999988765443 357999999999999999999999 899999999987 5
Q ss_pred ccceeeccccc----CCceEEEEecCCCceEEeee------------cCCcEEEEeCCCCCCCCCCCcccccccccee-c
Q psy2305 236 CILHTFPRQVS----TNQRVYFDLTSCSNYLLSGN------------TNGDLSIWNVNTSNLPSSPYEESVQEPLYKF-S 298 (334)
Q Consensus 236 ~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~ 298 (334)
.....+..+.. ........|+|++.+++++. .++.|++||..++ +.+..+ .
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g------------~~~~~l~~ 396 (435)
T 4e54_B 329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG------------KMMCQLYD 396 (435)
T ss_dssp SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC------------CEEEEECC
T ss_pred ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC------------cEEEEEeC
Confidence 54444443321 11223344566665555443 3457999999998 555554 4
Q ss_pred cccccccee-eeccCCCcccceeeEEeeecceeeee
Q psy2305 299 AHQDCTNGV-RWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 299 ~~~~~i~~~-~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+|...|.++ +| +|++ ++||+|+ |++|++
T Consensus 397 ~~~~~v~s~~~f--spdg----~~lasg~-d~~i~i 425 (435)
T 4e54_B 397 PESSGISSLNEF--NPMG----DTLASAM-GYHILI 425 (435)
T ss_dssp SSCCCCCCEEEE--CTTS----SCEEEEC-SSEEEE
T ss_pred CCCCcEEEEEEE--CCCC----CEEEEEc-CCcEEE
Confidence 677788887 69 9999 9999876 667764
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-41 Score=294.24 Aligned_cols=301 Identities=11% Similarity=0.098 Sum_probs=236.5
Q ss_pred CceeEEEEcCCCc-EEEEeeCCCeEEEEEC----CCCCc------eeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc
Q psy2305 2 DIEEDVDEAPDGT-CLLTNSNDNHLRTFDL----PSELH------CKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70 (334)
Q Consensus 2 d~V~~~~~sp~~~-~l~~~~~d~~v~iw~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (334)
+.|.+++|+|+|+ +||+++.||.|++|++ .+++. ...+...... .....+|...|.+++|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~---- 116 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL-----SASSGKTTNQVTCLAW---- 116 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC-----C------CBCEEEEEE----
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc-----cccccCCCCceEEEEE----
Confidence 5799999999999 9999999999999999 77762 2111110000 0001125668988888
Q ss_pred ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS 149 (334)
Q Consensus 71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 149 (334)
+|++++|++++.||.|++|| .+++....+..+.. .|.+++|+|++++|++++ |+.|++||+.+ ++....
T Consensus 117 ---s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~ 186 (425)
T 1r5m_A 117 ---SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRA-----PIVSVKWNKDGTHIISMDVENVTILWNVIS-GTVMQH 186 (425)
T ss_dssp ---CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCS-----CEEEEEECTTSSEEEEEETTCCEEEEETTT-TEEEEE
T ss_pred ---cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCc-----cEEEEEECCCCCEEEEEecCCeEEEEECCC-CcEEEE
Confidence 67999999999999999999 67778888876554 899999999999999887 99999999975 332221
Q ss_pred ec----------------------------------------------------ccccccccceEEEEEcCCCCcEEEEe
Q psy2305 150 RN----------------------------------------------------LKPWFRKNIVSAIAINPVHPDICALG 177 (334)
Q Consensus 150 ~~----------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~ 177 (334)
.. ..+..|...|.+++|+|+++ +|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 265 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSA 265 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEE
Confidence 10 02346788999999999999 99999
Q ss_pred ecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecC
Q psy2305 178 TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS 257 (334)
Q Consensus 178 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (334)
+.|+.|++||+++++.+..+.+|...|.+++|+|++ +|++++ .|+.|++||+++ +..+..+..+ ...+.+++|+|
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~i~d~~~-~~~~~~~~~~--~~~i~~~~~s~ 340 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVRLWSLKQ-NTLLALSIVD--GVPIFAGRISQ 340 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEEEEETTT-TEEEEEEECT--TCCEEEEEECT
T ss_pred cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEEEEECCC-CcEeEecccC--CccEEEEEEcC
Confidence 999999999999999999999999999999999999 999999 899999999987 6667777655 56788999999
Q ss_pred CCceEEeeecCCcEEEEeCCCCCCCCCCC--------ccccccccceeccccc--ccceeeeccCCCcccceeeEEeeec
Q psy2305 258 CSNYLLSGNTNGDLSIWNVNTSNLPSSPY--------EESVQEPLYKFSAHQD--CTNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 258 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
++++|++++.||.|++||+.++....... .....+.+..+..|.. .|.+++| +|++ ++|++++.
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~----~~l~~~~~ 414 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW--NCAG----NKISVAYS 414 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE--CTTS----SEEEEEES
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc--cCCC----ceEEEEec
Confidence 99999999999999999998763100000 0000126778888866 9999999 9999 99999999
Q ss_pred ceeeee
Q psy2305 328 QITNVK 333 (334)
Q Consensus 328 d~~i~~ 333 (334)
||.+++
T Consensus 415 dg~i~i 420 (425)
T 1r5m_A 415 LQEGSV 420 (425)
T ss_dssp SSCCEE
T ss_pred CceEEE
Confidence 998875
No 30
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-41 Score=303.98 Aligned_cols=271 Identities=20% Similarity=0.290 Sum_probs=235.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
..|.+++|+|++++|++++.|+.|++|+..... . ..+. .|...|.+++| +|++++|+
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~-~--------------~~~~-~h~~~v~~~~~-------~~~~~~l~ 319 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-L--------------QTLT-GHSSSVWGVAF-------SPDGQTIA 319 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-E--------------EEEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE-E--------------EEEe-cCCCCeEEEEE-------CCCCCEEE
Confidence 468999999999999999999999999975433 2 2333 35678888777 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.|+.|++||... +.+..+..+.. .+.+++|+|++++|++++ |+.+++||.. ++... .+.+|...
T Consensus 320 t~~~d~~i~~w~~~~-~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~~~----~~~~~~~~ 387 (577)
T 2ymu_A 320 SASDDKTVKLWNRNG-QHLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQ----TLTGHSSS 387 (577)
T ss_dssp EEETTSCEEEEETTS-CEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETT--CCEEE----EEECCSSC
T ss_pred EEeCCCeEEEEeCCC-CeeEEEeCCCC-----CEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCEEE----EecCCCCC
Confidence 999999999999754 45556665544 899999999999999987 9999999965 55555 57789999
Q ss_pred eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~ 240 (334)
|++++|+|+++ +|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||.. ++.+..
T Consensus 388 v~~~~~s~dg~-~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~--~~~~~~ 462 (577)
T 2ymu_A 388 VRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRN--GQLLQT 462 (577)
T ss_dssp EEEEEECTTSS-CEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT--SCEEEE
T ss_pred eEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECC--CCEEEE
Confidence 99999999999 9999999999999995 6788889999999999999999999999999 89999999975 566677
Q ss_pred ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305 241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV 320 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~ 320 (334)
+..| ...+.+++|+|++++|++++.|+.|++||... +.+..+.+|...|++++| +|++ +
T Consensus 463 ~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-------------~~~~~~~~h~~~v~~l~~--s~dg----~ 521 (577)
T 2ymu_A 463 LTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVRGVAF--SPDG----Q 521 (577)
T ss_dssp EECC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTS-------------CEEEEEECCSSCEEEEEE--CTTS----S
T ss_pred EcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-------------CEEEEEeCCCCCEEEEEE--cCCC----C
Confidence 7766 66788999999999999999999999999643 678889999999999999 9999 9
Q ss_pred eEEeeecceeeee
Q psy2305 321 ADATCSGQITNVK 333 (334)
Q Consensus 321 ~l~t~~~d~~i~~ 333 (334)
+||+++.||.|++
T Consensus 522 ~l~s~~~dg~v~l 534 (577)
T 2ymu_A 522 TIASASDDKTVKL 534 (577)
T ss_dssp CEEEEETTSEEEE
T ss_pred EEEEEECcCEEEE
Confidence 9999999999875
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-42 Score=299.01 Aligned_cols=286 Identities=15% Similarity=0.165 Sum_probs=237.7
Q ss_pred CceeEEEEcCCCc-EEEEe----------eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc
Q psy2305 2 DIEEDVDEAPDGT-CLLTN----------SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70 (334)
Q Consensus 2 d~V~~~~~sp~~~-~l~~~----------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (334)
+.|.+++|+|+|+ +|+++ +.|+.|+||++.++.... ......+...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-------------~~~~~~~~~~v~~~~~---- 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-------------PIASLQVDSKFNDLDW---- 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-------------CSCCCCCSSCEEEEEE----
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-------------EEEEEecCCceEEEEE----
Confidence 3688999999987 99999 889999999998775320 1112235678988888
Q ss_pred ceecCCCcEEEEeeCCCcEEEEeCCC----CeeeEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCC
Q psy2305 71 SSIDGFTSYFLCSSMYAPIHLWDSVG----GEIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPG 144 (334)
Q Consensus 71 ~~~s~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~ 144 (334)
+|++++|++++.|+.|++||+.+ .+....+..|.. .|.+++|+|+ +++|++++ |+.|++||+....
T Consensus 76 ---s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 76 ---SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS-----SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT 147 (416)
T ss_dssp ---CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-----CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred ---CCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc-----ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence 67999999999999999999987 346666766544 8999999998 88999887 9999999998733
Q ss_pred C-----eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------CCCeEEEEEccCC
Q psy2305 145 R-----ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------NGGITHLEFSSNG 213 (334)
Q Consensus 145 ~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~ 213 (334)
. ..... .....|...|.+++|+|++..+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|++
T Consensus 148 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 148 ESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp SCTTTCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred ccccccccccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 1 11110 0346788999999999994339999999999999999999988888766 7899999999997
Q ss_pred -cEEEeeecCCC---eEEEEEccCCCccceeec-ccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCCCCCCCCCc
Q psy2305 214 -ILLFSGARKDC---EIICWDLRNPGCILHTFP-RQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYE 287 (334)
Q Consensus 214 -~~l~~~~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 287 (334)
.+|++++ .|+ .|++||++....+...+. .| ...+.+++|+| ++++|++++.||.|++||+.++
T Consensus 227 ~~~l~~~~-~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-------- 295 (416)
T 2pm9_A 227 STRVATAT-GSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-------- 295 (416)
T ss_dssp TTEEEEEE-CCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--------
T ss_pred CCEEEEEE-CCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--------
Confidence 6889998 898 999999997445666665 55 66789999999 9999999999999999999997
Q ss_pred cccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 288 ESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 288 ~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.+..+.+|...|.+++| +|+++ .+|++++.|+.|++
T Consensus 296 ----~~~~~~~~~~~~v~~~~~--s~~~~---~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 296 ----EQLSQFPARGNWCFKTKF--APEAP---DLFACASFDNKIEV 332 (416)
T ss_dssp ----CEEEEEECSSSCCCCEEE--CTTCT---TEEEECCSSSEEEE
T ss_pred ----ccceeecCCCCceEEEEE--CCCCC---CEEEEEecCCcEEE
Confidence 778889999999999999 99973 58999999999875
No 32
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.7e-42 Score=288.15 Aligned_cols=295 Identities=13% Similarity=0.092 Sum_probs=231.7
Q ss_pred CceeEEEEcCCCcEE-EEeeC---CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 2 DIEEDVDEAPDGTCL-LTNSN---DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 2 d~V~~~~~sp~~~~l-~~~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
+.|.+++|+|++..+ ++++. |+.|++|++.+++.. ......|...|.+++|+|. ++++
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~----~~~~ 80 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------LLREIEKAKPIKCGTFGAT----SLQQ 80 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------EEEEEEESSCEEEEECTTC----CTTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------ceeeecccCcEEEEEEcCC----CCCC
Confidence 479999999999655 55655 899999999988765 3444467789999888442 1227
Q ss_pred cEEEEeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEE------EcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305 78 SYFLCSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLA------FSLDGNKIYAGF-LSEVKIFSTDRPGRECVS 149 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 149 (334)
++|++++.||.|++||+.+++ .+..+..+.. .|.+++ |+|++++|++++ |+.|++||+.........
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE-----IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCCSS-----CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEeccc-----ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 999999999999999999887 7777876554 889995 578999999988 999999999974334442
Q ss_pred eccccccc----ccceEEEE----EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEcc---CCcEEEe
Q psy2305 150 RNLKPWFR----KNIVSAIA----INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS---NGILLFS 218 (334)
Q Consensus 150 ~~~~~~~~----~~~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~ 218 (334)
+..| ...+.+++ |+|+++ ++++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++
T Consensus 156 ----~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 156 ----MEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp ----ECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEE
T ss_pred ----ccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEE
Confidence 3333 34888988 788999 999999999999999998877544 56889999999999 9999999
Q ss_pred eecCCCeEEEEEccCCCccceeec---ccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCCCCCCCCCcc------
Q psy2305 219 GARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTSNLPSSPYEE------ 288 (334)
Q Consensus 219 ~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------ 288 (334)
++ .|+.|++||++. +.....+. ...+...+.+++|+|+++ +|++++.||.|++||+..+......+.+
T Consensus 230 ~~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 230 TS-LEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp EE-STTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred EC-CCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 99 899999999987 55544443 112367889999999998 8999999999999999876433111110
Q ss_pred -ccccccceecccccccceeeeccCCCcccceeeEE-eeecceeeee
Q psy2305 289 -SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADA-TCSGQITNVK 333 (334)
Q Consensus 289 -~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~-t~~~d~~i~~ 333 (334)
...+.+..+.+|...|.+++| +|++ ++|+ +++.||.+++
T Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~--s~~~----~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 308 AGSVSLLQNVTLSTQPISSLDW--SPDK----RGLCVCSSFDQTVRV 348 (357)
T ss_dssp CCEEEEEEEEECCSSCEEEEEE--CSSS----TTEEEEEETTSEEEE
T ss_pred ccccceeeccccCCCCeeEEEE--cCCC----CeEEEEecCCCcEEE
Confidence 122456778889999999999 9999 8888 8999999875
No 33
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-41 Score=279.03 Aligned_cols=249 Identities=15% Similarity=0.183 Sum_probs=200.9
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|+|++||+|+.|++|+||++...... +...+. .|...|.+++|+| ..++++|+
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------------~~~~l~-gH~~~V~~v~~s~-----~~~g~~l~ 71 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------------LIDTLT-GHEGPVWRVDWAH-----PKFGTILA 71 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------------CCEEEC-CCSSCEEEEEECC-----GGGCSEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------------EEEEEc-cccCCeEEEEecC-----CCcCCEEE
Confidence 57999999999999999999999999999754221 113444 4668899999843 12488999
Q ss_pred EeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 82 CSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+++.|++|++||+.+++ .+..+..|.. .|.+++|+|+ +.+|++++ |+.|++||++........ .+.+
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~---~~~~ 143 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI---IIDA 143 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE---EEEC
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCCC-----ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee---eeec
Confidence 99999999999998774 4455555444 8999999998 88999887 999999999863222111 4678
Q ss_pred cccceEEEEEcCC-------------CCcEEEEeecCCeEEEEECCCCC----ceEeeccCCCCeEEEEEccCC---cEE
Q psy2305 157 RKNIVSAIAINPV-------------HPDICALGTYSKIIGLFSDSDGR----PLFFLKGHNGGITHLEFSSNG---ILL 216 (334)
Q Consensus 157 ~~~~v~~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~---~~l 216 (334)
|...|.+++|+|+ ++ +|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ ++|
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp CSSCEEEEEECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 9999999999997 45 89999999999999998776 566788999999999999985 899
Q ss_pred EeeecCCCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 217 FSGARKDCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 217 ~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
++++ .|++|++||++..... ...+..+.+...+.+++|+|+|++|++++.|+.|++|+...
T Consensus 223 as~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 223 ASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999 8999999999863211 12222223466788999999999999999999999999864
No 34
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-42 Score=305.64 Aligned_cols=301 Identities=11% Similarity=0.088 Sum_probs=220.4
Q ss_pred ceeEEEEcCCC---------cEEEE-------------------eeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee
Q psy2305 3 IEEDVDEAPDG---------TCLLT-------------------NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK 54 (334)
Q Consensus 3 ~V~~~~~sp~~---------~~l~~-------------------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (334)
+|++|+|+|++ ++||+ ++.|++|+||++.+++... ......
T Consensus 135 ~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~-----------~~~~~l 203 (524)
T 2j04_B 135 LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC-----------VKVQTI 203 (524)
T ss_dssp --CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE-----------EEEEEE
T ss_pred ceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc-----------eEEEEE
Confidence 56777777765 56655 5578899999998765420 000112
Q ss_pred eeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee-----------EEEcCccccccccceeEEEEcCC
Q psy2305 55 IKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK-----------ATYRPYNQVDEVTHAYSLAFSLD 123 (334)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~ 123 (334)
.++.+.|.+++|+|.. ..++++.+||+++.||+|++||+.++... ..+..+.. .|++++|+++
T Consensus 204 ~~~~~~V~~v~wsp~~-~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~-----~v~sv~~s~~ 277 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGC-HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS-----LITTFDFLSP 277 (524)
T ss_dssp EECCCSEEEEEECSSC-CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT-----CEEEEEESSS
T ss_pred EecCCcEEEEEECCCC-CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC-----CEEEEEecCC
Confidence 3456789999997731 22355789999999999999999866421 23444332 8999999987
Q ss_pred CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEE--EEcCCC-CcEEEEeecCCeEEEEECCCCCceEeecc
Q psy2305 124 GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAI--AINPVH-PDICALGTYSKIIGLFSDSDGRPLFFLKG 199 (334)
Q Consensus 124 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 199 (334)
+ .|++|+ ||+|++||+++...... .+.+|...|+++ .|+|++ . +|++++.|++|++||++++++...+.+
T Consensus 278 ~-~lasgs~DgtV~lWD~~~~~~~~~----~~~~H~~~V~sv~~~~s~~g~~-~laS~S~D~tvklWD~~~~~~~~~~~~ 351 (524)
T 2j04_B 278 T-TVVCGFKNGFVAEFDLTDPEVPSF----YDQVHDSYILSVSTAYSDFEDT-VVSTVAVDGYFYIFNPKDIATTKTTVS 351 (524)
T ss_dssp S-EEEEEETTSEEEEEETTBCSSCSE----EEECSSSCEEEEEEECCTTSCC-EEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred C-eEEEEeCCCEEEEEECCCCCCceE----EeecccccEEEEEEEcCCCCCe-EEEEeccCCeEEEEECCCCCccccccc
Confidence 5 788887 99999999986323222 467899999999 578887 6 999999999999999999888777777
Q ss_pred CCC--CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305 200 HNG--GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN 277 (334)
Q Consensus 200 ~~~--~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 277 (334)
|.. .|.+++|+|+++.|++++ .|++|++||++. +..+..+.+| ...+.+++|+|+|++|++|+.||+|++||+.
T Consensus 352 ~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~-~~~~~~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 352 RFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRA-AFAVHPLVSR--ETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp ECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTC-TTCCEEEEEC--SSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred ccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcc-cccceeeecC--CCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 653 578999999999999999 899999999998 6666677765 6789999999999999999999999999975
Q ss_pred CCCCC------------------CCCCcc--------------ccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305 278 TSNLP------------------SSPYEE--------------SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC 325 (334)
Q Consensus 278 ~~~~~------------------~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~ 325 (334)
..... ++|+.. .....+..+.+|...|.+++| +|+++ ....||+|
T Consensus 428 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vaf--sp~~~-~~~~lAsg 504 (524)
T 2j04_B 428 RRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKW--NETSA-GGKCYAFS 504 (524)
T ss_dssp SSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEE--CCSTT-TTTEEEEE
T ss_pred HhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEEC--CCCCC-ccHHHHhh
Confidence 43111 233321 012345567789999999999 99960 00489999
Q ss_pred ecceeeee
Q psy2305 326 SGQITNVK 333 (334)
Q Consensus 326 ~~d~~i~~ 333 (334)
+.||.|++
T Consensus 505 ~~~g~vrl 512 (524)
T 2j04_B 505 NSAGLLTL 512 (524)
T ss_dssp CTTSEEEE
T ss_pred ccCceEEE
Confidence 99999986
No 35
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=296.29 Aligned_cols=306 Identities=14% Similarity=0.148 Sum_probs=223.5
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeec------------eeEEEEEEecc
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG------------GIIYDYVWYPK 69 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~ 69 (334)
++|.+++|+|+|++||+|+.||.|+||++.+++... ........+...+.+ |. ..|.+++|
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~--- 101 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ---SHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRW--- 101 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC--------CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEE---
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC---cccccceeEeccccc-ccccccccccccccCceEEEEE---
Confidence 579999999999999999999999999998776210 000000001134443 43 66888888
Q ss_pred cceecCCC--cEEEEeeCCCcEEEEeCCCCeeeE---------------------------------------EE-cCcc
Q psy2305 70 TSSIDGFT--SYFLCSSMYAPIHLWDSVGGEIKA---------------------------------------TY-RPYN 107 (334)
Q Consensus 70 ~~~~s~~~--~~l~~~~~d~~i~iwd~~~~~~~~---------------------------------------~~-~~~~ 107 (334)
+|++ .+|++++.|+.|++||+.+++... .+ ..
T Consensus 102 ----~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (447)
T 3dw8_B 102 ----LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA-- 175 (447)
T ss_dssp ----CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC--
T ss_pred ----cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC--
Confidence 5576 789999999999999987644321 11 22
Q ss_pred ccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee---cccccccccceEEEEEcCCC-CcEEEEeecCCeE
Q psy2305 108 QVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR---NLKPWFRKNIVSAIAINPVH-PDICALGTYSKII 183 (334)
Q Consensus 108 ~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i 183 (334)
|. ..|.+++|+|++++|+++.|+.|++||++..+...... +..+.+|...|.+++|+|++ . +|++|+.||.|
T Consensus 176 h~---~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HT---YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSKGTI 251 (447)
T ss_dssp CS---SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETTSCE
T ss_pred CC---cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCCCeE
Confidence 22 28999999999999998889999999998523333211 11356899999999999998 6 99999999999
Q ss_pred EEEECCCCCc----eEeeccCCC------------CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccC
Q psy2305 184 GLFSDSDGRP----LFFLKGHNG------------GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247 (334)
Q Consensus 184 ~i~d~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 247 (334)
++||+++++. +..+..|.. .|.+++|+|+|++|++++ . +.|++||++..+.++..+..|...
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCccccceeeccccc
Confidence 9999999886 788888876 899999999999999999 7 999999998756777777766321
Q ss_pred Cc-------------eEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC-----CCCcc---cc------------cccc
Q psy2305 248 NQ-------------RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS-----SPYEE---SV------------QEPL 294 (334)
Q Consensus 248 ~~-------------~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~---~~------------~~~~ 294 (334)
.. +..++|+|++++|++++.||.|++||+.+++... .|... .. ....
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence 11 2348899999999999999999999999874320 00000 00 0000
Q ss_pred ceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305 295 YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV 332 (334)
Q Consensus 295 ~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~ 332 (334)
.....+...|..++| +|++ .+||+++.++.+.
T Consensus 410 ~~~~~~~~~i~~~~~--~p~~----~~la~~~~~~~~~ 441 (447)
T 3dw8_B 410 VDSLDFNKKILHTAW--HPKE----NIIAVATTNNLYI 441 (447)
T ss_dssp GGGCCTTSCCCEEEE--CSSS----SEEEEECSSCEEE
T ss_pred ccccccCCceeEEEE--CCCC----CEEEEEecceeee
Confidence 001123457899999 9999 9999999987543
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-42 Score=298.87 Aligned_cols=276 Identities=16% Similarity=0.122 Sum_probs=225.3
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.+++++|+|+|++|++++.|+.|++||+.+.+.. ..+..+ .+..+. .+++++++|++
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--------------~~~~~~---~~~~~~------~~~~~~~~l~~ 114 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS--------------KMLKRA---DYTAVD------TAKLQMRRFIL 114 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT--------------TTSCSC---CEEEEE------EECSSSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee--------------eEEecC---CceEEE------EEecCCCEEEE
Confidence 4568999999999999999999999999877653 122221 233332 23779999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV 161 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 161 (334)
++.|+.|++||+.+++....+..|.. .|++++|+|++++|++++ |+.|++||+.+ ++... .+.+|...|
T Consensus 115 ~~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~----~~~~h~~~v 184 (420)
T 3vl1_A 115 GTTEGDIKVLDSNFNLQREIDQAHVS-----EITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPR----TLIGHRATV 184 (420)
T ss_dssp EETTSCEEEECTTSCEEEEETTSSSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTT-CCCCE----EEECCSSCE
T ss_pred EECCCCEEEEeCCCcceeeecccccC-----ccEEEEECCCCCEEEEEeCCCeEEEEeCCC-CcCce----EEcCCCCcE
Confidence 99999999999999888877766554 899999999999999988 99999999987 44444 467899999
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc---CCCCeEE---------------------EEEccCCcEEE
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG---HNGGITH---------------------LEFSSNGILLF 217 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~---------------------~~~~~~~~~l~ 217 (334)
.+++|+|+++ +|++++.|+.|++||+++++.+..+.. +...+.+ ++|+|++++|+
T Consensus 185 ~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (420)
T 3vl1_A 185 TDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263 (420)
T ss_dssp EEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred EEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence 9999999999 999999999999999999998888864 3344444 45578999999
Q ss_pred eeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCCCCCCCCCccccccccce
Q psy2305 218 SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK 296 (334)
Q Consensus 218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 296 (334)
+++ .||.|++||+++ +.....+.. .+...+.+++|+|+++ +|++++.||.|++||+++++ .++..
T Consensus 264 ~~~-~dg~i~i~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-----------~~~~~ 329 (420)
T 3vl1_A 264 AGH-VSGVITVHNVFS-KEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-----------CPVGE 329 (420)
T ss_dssp EEE-TTSCEEEEETTT-CCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----------SCSEE
T ss_pred EEc-CCCeEEEEECCC-CceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-----------Cchhh
Confidence 999 899999999997 554554433 2356789999999998 99999999999999999873 34666
Q ss_pred ecc-cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 297 FSA-HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 297 ~~~-~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.. |...|..+.| |++ ++|++++.|+.+++
T Consensus 330 ~~~~~~~~v~~~~~---~~~----~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 330 FLINEGTPINNVYF---AAG----ALFVSSGFDTSIKL 360 (420)
T ss_dssp EEESTTSCEEEEEE---ETT----EEEEEETTTEEEEE
T ss_pred hhccCCCCceEEEe---CCC----CEEEEecCCccEEE
Confidence 666 5557777754 578 89999999999875
No 37
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-42 Score=299.33 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=224.1
Q ss_pred CceeEEEEcC-CCcEEEEeeCCCeEEEEECCC---CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPS---ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
++|++++|+| ++++||+|+.||+|+|||+.+ +... ...+...|...|.+++| +|++
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~-------~~~~ 123 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY-------------SSSLTYDCSSTVTQITM-------IPNF 123 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC-------------SCSEEEECSSCEEEEEE-------CTTS
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc-------------ceeeeccCCCCEEEEEE-------eCCC
Confidence 5799999999 999999999999999999876 3311 11333357789999888 6699
Q ss_pred cEEEEeeCCCcEEEEeCC---CCeeeEEEcCcc-----ccc--cccceeEEE--EcCCCCEEEEee-CCcEEEEEcCCCC
Q psy2305 78 SYFLCSSMYAPIHLWDSV---GGEIKATYRPYN-----QVD--EVTHAYSLA--FSLDGNKIYAGF-LSEVKIFSTDRPG 144 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~-----~~~--~~~~v~~~~--~~~~~~~l~~~~-d~~i~i~d~~~~~ 144 (334)
++|++++.||.|++||+. +++....+..+. ... ....+.++. +++++.+|++++ |+.|++||+++ +
T Consensus 124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~ 202 (437)
T 3gre_A 124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT-L 202 (437)
T ss_dssp SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT-C
T ss_pred CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-C
Confidence 999999999999999984 444443332210 000 112566666 668899999988 99999999987 5
Q ss_pred Ceeeeecccccc--cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEc----cCCcEEE
Q psy2305 145 RECVSRNLKPWF--RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFS----SNGILLF 217 (334)
Q Consensus 145 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~ 217 (334)
+... .+.. |...|++++|+|+++ +|++|+.||.|++||+++++++..+. .|...|.+++|+ |++++|+
T Consensus 203 ~~~~----~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 203 ERLQ----IIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp CEEE----EEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred eeeE----EEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 5554 3444 889999999999999 99999999999999999999988875 788899999665 5688999
Q ss_pred eeecCCCeEEEEEccCCCccceeecccc------------------------cCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305 218 SGARKDCEIICWDLRNPGCILHTFPRQV------------------------STNQRVYFDLTSCSNYLLSGNTNGDLSI 273 (334)
Q Consensus 218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------~~~~~~~~~~s~~~~~l~~~~~dg~i~i 273 (334)
+++ .|+.|++||+++ ++.+..+..+. +...+.+++|+ ++++|++++.|+.|++
T Consensus 278 s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 278 GGS-SKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM 354 (437)
T ss_dssp EES-TTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred EEc-CCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence 999 899999999987 55555555331 34457788898 7799999999999999
Q ss_pred EeCCCCCCCCCCCc-------------------------cccccccceecccccccceeeeccCCC--cccceeeEEeee
Q psy2305 274 WNVNTSNLPSSPYE-------------------------ESVQEPLYKFSAHQDCTNGVRWKHHKF--ERDLLVADATCS 326 (334)
Q Consensus 274 wd~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~i~~~~~~~s~~--~~~~~~~l~t~~ 326 (334)
||+.+++....... ............|.+.|++++| +++ + .+|++|+
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~--~~~~~~----~~l~s~~ 428 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIST--CEVDET----PLLVACD 428 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEE--EESSSS----EEEEEEE
T ss_pred EECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEee--eccCCc----eEEEEEc
Confidence 99998743310000 0000011112238889999999 777 7 8999999
Q ss_pred cceeeee
Q psy2305 327 GQITNVK 333 (334)
Q Consensus 327 ~d~~i~~ 333 (334)
.||.|++
T Consensus 429 ~dG~I~i 435 (437)
T 3gre_A 429 NSGLIGI 435 (437)
T ss_dssp TTSCEEE
T ss_pred CCceEEE
Confidence 9999986
No 38
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-41 Score=288.26 Aligned_cols=288 Identities=12% Similarity=0.133 Sum_probs=229.4
Q ss_pred CceeEEEEcCC----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee----eceeEEEEEEeccccee
Q psy2305 2 DIEEDVDEAPD----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK----EGGIIYDYVWYPKTSSI 73 (334)
Q Consensus 2 d~V~~~~~sp~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~ 73 (334)
++|.+++|+|+ ...+++++.++.|++|++.+++.. ..+..+ +...|.+++|+|..
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~--- 81 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------RLLQSYVDADADENFYTCAWTYDS--- 81 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------EEEEEEECSCTTCCEEEEEEEECT---
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------EeeeeccccCCCCcEEEEEeccCC---
Confidence 57999999984 446666667779999999977654 233322 44679999996521
Q ss_pred cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305 74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRN 151 (334)
Q Consensus 74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~ 151 (334)
.+++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+| ++++|++++ |+.|++||+++ ++......
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~ 155 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-----AINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFG 155 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEEEC
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-----cEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEEec
Confidence 11278999999999999999999999888886554 899999999 899999988 99999999986 44444211
Q ss_pred ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc----------------------------CCCC
Q psy2305 152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG----------------------------HNGG 203 (334)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~ 203 (334)
....|...|.+++|+|+++ +|++++.||.|++||+++++....+.. |...
T Consensus 156 -~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 156 -GVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp -STTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred -ccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 1268999999999999999 999999999999999988765544443 8999
Q ss_pred eEEEEEccCCcEEEeeecCCCeEEEEEccCCCc-------------cceeecccccCCceEEEEecCC--CceEEeeecC
Q psy2305 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGC-------------ILHTFPRQVSTNQRVYFDLTSC--SNYLLSGNTN 268 (334)
Q Consensus 204 i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~d 268 (334)
|.+++|+ +++|++++ .|+.|++||++.... .+..+..+ ...+.+++|+|+ +++|++++.|
T Consensus 234 v~~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 234 VDCVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp CCEEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecC
Confidence 9999998 77999999 899999999987322 13334433 445667888999 9999999999
Q ss_pred CcEEEEeCCCCCCCCCCCccccccccceeccc--ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH--QDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|.|++||+.+++.. ......+..| ...|.+++| +|++ ++|++++.||.|++
T Consensus 309 g~i~vwd~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~--s~~~----~~l~s~~~dg~i~i 361 (366)
T 3k26_A 309 GKLYVWDLEVEDPH--------KAKCTTLTHHKCGAAIRQTSF--SRDS----SILIAVCDDASIWR 361 (366)
T ss_dssp SCEEEEECCSSSGG--------GCEEEEECCTTCCSCEEEEEE--CTTS----SEEEEEETTSEEEE
T ss_pred CcEEEEECCCCCCc--------cccceEEcccccCCceEEEEe--CCCC----CeEEEEeCCCEEEE
Confidence 99999999987321 0133366777 689999999 9999 99999999999875
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-41 Score=285.88 Aligned_cols=246 Identities=11% Similarity=0.101 Sum_probs=198.3
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|++. +++++.||+|+|||+.+++... ........|...|.+++| +|++++|+
T Consensus 95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~-----------~~~~~~~~h~~~V~~v~~-------spdg~~l~ 155 (357)
T 4g56_B 95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL-----------VNKFAKYEHDDIVKTLSV-------FSDGTQAV 155 (357)
T ss_dssp SCEEEEEEETTTE-EEEEETTSCEEEC--------C-----------CCCEEECCCSSCEEEEEE-------CSSSSEEE
T ss_pred CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE-----------EEeeccCCCCCCEEEEEE-------CCCCCEEE
Confidence 4689999999986 4567789999999998876431 111222346788998888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++.|+.|++||+.+++.+..+..|.. .|++++|+|++. ++++++ |+.|++||+++ ++..... ....+..
T Consensus 156 sgs~dg~v~iwd~~~~~~~~~~~~h~~-----~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~--~~~~~~~ 227 (357)
T 4g56_B 156 SGGKDFSVKVWDLSQKAVLKSYNAHSS-----EVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRI--DFCASDT 227 (357)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBC--CCTTCCS
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCC-----CEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeee--eeccccc
Confidence 999999999999999999999987655 899999999985 667776 99999999987 4433321 3456778
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCccc
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
.+.+++|+|++..+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++ .|++|+|||+++ ++.+
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~-~~~~ 305 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADF-SEVF 305 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTS-CEEE
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCC-CcEe
Confidence 899999999876589999999999999999999999999999999999999987 5789999 899999999987 6555
Q ss_pred eeecccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCC
Q psy2305 239 HTFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
..+ +| ...+.+++|+| ++++|++++.||+|++|++.+.
T Consensus 306 ~~~-~H--~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 306 RDL-SH--RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEC-CC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEC-CC--CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 443 44 67899999998 7999999999999999999775
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.9e-41 Score=289.24 Aligned_cols=296 Identities=13% Similarity=0.076 Sum_probs=234.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC---c
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT---S 78 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~---~ 78 (334)
++|++++|+| ++|++++.||.|++|++.+++... .......+. .|...|.+++|+|.. .+++ +
T Consensus 17 ~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~-~h~~~v~~~~~~~~~---~~~g~~~~ 82 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN--------PKDKSYSHF-VHKSGLHHVDVLQAI---ERDAFELC 82 (397)
T ss_dssp SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC--------GGGGEEEEE-CCTTCEEEEEEEEEE---ETTTEEEE
T ss_pred cCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc--------CCCcceEEe-cCCCcEEEEEEeccc---ccCCcccc
Confidence 5799999999 799999999999999999877110 000113444 466789998884410 1128 9
Q ss_pred EEEEeeCCCcEEEEeCCCCee-----eEEEcCccccccccceeEEEEc----CCCCE-EEEee-CCcEEEEEcCC-----
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEI-----KATYRPYNQVDEVTHAYSLAFS----LDGNK-IYAGF-LSEVKIFSTDR----- 142 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~----~~~~~-l~~~~-d~~i~i~d~~~----- 142 (334)
+|++++.|+.|++||+.+++. ...+..+........|.+++|+ |++++ |++++ |+.|++||+..
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 999999999999999988776 7777765211001289999999 99999 99887 99999999985
Q ss_pred -CCCeeeeecccc-------cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc---C---CCCeEEEE
Q psy2305 143 -PGRECVSRNLKP-------WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG---H---NGGITHLE 208 (334)
Q Consensus 143 -~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~i~~~~ 208 (334)
...........+ ..|...+.+++|+|++ ++++++.||.|++||+++++.+..+.. | ...|.+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 222110000012 4578899999999998 899999999999999999999999998 8 99999999
Q ss_pred EccCCcEEEeeecCC---CeEEEEEccCCCccceeecccc-----------cCCceEEEEecCCCceEEeeecCCcEEEE
Q psy2305 209 FSSNGILLFSGARKD---CEIICWDLRNPGCILHTFPRQV-----------STNQRVYFDLTSCSNYLLSGNTNGDLSIW 274 (334)
Q Consensus 209 ~~~~~~~l~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 274 (334)
|+|++++|++++ .| +.|++||+++ ++.+..+.... +...+.+++|+|++++|++++.||.|++|
T Consensus 241 ~~~~~~~l~~~~-~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 241 FSPQGSLLAIAH-DSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp ECSSTTEEEEEE-EETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred ECCCCCEEEEEe-cCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999999999 79 9999999997 67777776511 36788999999999999999999999999
Q ss_pred eCCCCCCCCCCCccccccccceec------cc---------------ccccceeeeccCCCccccee----------eEE
Q psy2305 275 NVNTSNLPSSPYEESVQEPLYKFS------AH---------------QDCTNGVRWKHHKFERDLLV----------ADA 323 (334)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~~~s~~~~~~~~----------~l~ 323 (334)
|+.++ +.+..+. +| ...|.+++| +|++ + +|+
T Consensus 319 d~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~--~~~g----~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 319 DVKTK------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF--LKKG----WRSGMGADLNESLC 380 (397)
T ss_dssp ETTTT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE--ECTT----TSBSTTCTTSCEEE
T ss_pred EcCCC------------ceeEEEecccCcccchhhhhccccccccccCCceeEEEe--cccc----ccccccccccceEE
Confidence 99987 6677777 67 889999999 9986 4 899
Q ss_pred eeecceeeee
Q psy2305 324 TCSGQITNVK 333 (334)
Q Consensus 324 t~~~d~~i~~ 333 (334)
+++.||.|++
T Consensus 381 s~~~dg~i~i 390 (397)
T 1sq9_A 381 CVCLDRSIRW 390 (397)
T ss_dssp EEETTTEEEE
T ss_pred EecCCCcEEE
Confidence 9999999875
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-42 Score=295.67 Aligned_cols=292 Identities=14% Similarity=0.166 Sum_probs=230.6
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCC----CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC-
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE----LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF- 76 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~- 76 (334)
+.|.+++|+|++++|++++.||.|++|++.+. +.. ..+. .|...|.+++| +|+
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~ 125 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSM--------------ARFS-NHSSSVKTVKF-------NAKQ 125 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEE--------------EECC-CSSSCCCEEEE-------CSSS
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccccccch--------------hhcc-CCccceEEEEE-------cCCC
Confidence 46899999999999999999999999999872 222 2333 36678888888 567
Q ss_pred CcEEEEeeCCCcEEEEeCCCCe------eeEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCCCeee
Q psy2305 77 TSYFLCSSMYAPIHLWDSVGGE------IKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPGRECV 148 (334)
Q Consensus 77 ~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~ 148 (334)
+++|++++.|+.|++||+.+++ ....+.. ...+...|.+++|+|+ +.+|++++ |+.|++||++. ++...
T Consensus 126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~ 202 (416)
T 2pm9_A 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ--SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-KKEVI 202 (416)
T ss_dssp TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC--SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-TEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcccccccccccccc--ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-CCcce
Confidence 8899999999999999998876 3222211 1111228999999999 68888887 99999999986 44444
Q ss_pred eeccccccc------ccceEEEEEcCCCCcEEEEeecCC---eEEEEECCCC-CceEeec-cCCCCeEEEEEcc-CCcEE
Q psy2305 149 SRNLKPWFR------KNIVSAIAINPVHPDICALGTYSK---IIGLFSDSDG-RPLFFLK-GHNGGITHLEFSS-NGILL 216 (334)
Q Consensus 149 ~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l 216 (334)
. +..+ ...+.+++|+|++..++++++.|+ .|++||++++ +++..+. +|...|.+++|+| ++++|
T Consensus 203 ~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 203 H----LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp E----ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred E----EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence 2 3333 789999999999855899999998 9999999986 6777788 8999999999999 99999
Q ss_pred EeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCc-----c--
Q psy2305 217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYE-----E-- 288 (334)
Q Consensus 217 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~-- 288 (334)
++++ .|+.|++||+++ ++.+..+..| ...+.+++|+|++ .+|++++.|+.|++||+........... .
T Consensus 279 ~s~~-~dg~v~~wd~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 279 LSSG-RDNTVLLWNPES-AEQLSQFPAR--GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp EEEE-SSSEEEEECSSS-CCEEEEEECS--SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred EEEe-CCCCEEEeeCCC-CccceeecCC--CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 9999 899999999998 7777777766 5677889999999 8999999999999999988754321100 0
Q ss_pred -----------------ccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 289 -----------------SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 289 -----------------~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
..... .....|...+..++| +|+| ++|++++.|++|++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--s~dg----~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHW--AFGG----KLVQITPDGKGVSI 409 (416)
T ss_dssp ------------CCSCCCSSCC-CCCSTTCCCSCCCEE--ETTT----EEECBCTTSSCBCC
T ss_pred cccccccccccccccccccccc-cCCccccCCccceEE--eeCC----eEEEEeCCCCeEEE
Confidence 00001 112226678889999 9999 99999999999875
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-42 Score=295.12 Aligned_cols=292 Identities=12% Similarity=0.035 Sum_probs=215.4
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCC--CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE--LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY 79 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~ 79 (334)
++|++++|+|+|++||+++.|+.|++|++.++ +.. ..+. .|...|.+++| +|++++
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~--------------~~~~-~h~~~v~~~~~-------s~~~~~ 69 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA--------------RTFS-DHDKIVTCVDW-------APKSNR 69 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC--------------CCBC-CCSSCEEEEEE-------CTTTCC
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE--------------EEEe-cCCceEEEEEE-------eCCCCE
Confidence 46999999999999999999999999999877 332 2333 36678999888 669999
Q ss_pred EEEeeCCCcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCC--eeeeeccc
Q psy2305 80 FLCSSMYAPIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGR--ECVSRNLK 153 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~--~~~~~~~~ 153 (334)
|++++.|+.|++||+.+++ ....+..+.. .|.+++|+|++++|++++ |+.|++||++.... ... .
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~ 140 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR-----AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK----H 140 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSS-----CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE----E
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCC-----ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee----E
Confidence 9999999999999998877 4455554443 899999999999999887 99999999986321 122 3
Q ss_pred ccc-cccceEEEEEcCCCCcEEEEeecCCeEEEEECCC------------------CCceEeeccCCCCeEEEEEccCCc
Q psy2305 154 PWF-RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD------------------GRPLFFLKGHNGGITHLEFSSNGI 214 (334)
Q Consensus 154 ~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~ 214 (334)
+.. |...|.+++|+|+++ +|++++.|+.|++||++. ++++..+ +|...|.+++|+|+++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp ECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred eecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 455 999999999999999 999999999999999852 4455666 8999999999999999
Q ss_pred EEEeeecCCCeEEEEEccCCCcc----ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC-C----C
Q psy2305 215 LLFSGARKDCEIICWDLRNPGCI----LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS-S----P 285 (334)
Q Consensus 215 ~l~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~----~ 285 (334)
+|++++ .|+.|++||+++ +.. +..+..| ...+.+++|+|++++|++++.++.+ +|+........ . +
T Consensus 219 ~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 219 ALAYAG-HDSSVTIAYPSA-PEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp CEEEEE-TTTEEC-CEECS-TTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEEEEe-CCCcEEEEECCC-CCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 999999 899999999998 544 5566655 6678899999999999999866655 77665322110 0 0
Q ss_pred Ccccc-------------c----------------------cccceecccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305 286 YEESV-------------Q----------------------EPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQIT 330 (334)
Q Consensus 286 ~~~~~-------------~----------------------~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~ 330 (334)
..... . ........|.+.|+++++ .+....+...|+|||.||.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~--~~~~~~~~~~~~s~g~Dg~ 371 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRP--YAGTPGNITAFTSSGTDGR 371 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEE--EEEETTEEEEEEEEETTSE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEec--cCCCCCceEEEEeecCCCc
Confidence 00000 0 001112238899999997 6544111126999999999
Q ss_pred eee
Q psy2305 331 NVK 333 (334)
Q Consensus 331 i~~ 333 (334)
|++
T Consensus 372 i~i 374 (377)
T 3dwl_C 372 VVL 374 (377)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 43
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-40 Score=277.70 Aligned_cols=240 Identities=20% Similarity=0.224 Sum_probs=205.2
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
..|.+++|+|+|++|++|+.|+.|++|++.+..... .....+. .|...|.++.| ++++. ++
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~----------~~~~~~~-~h~~~v~~~~~-------~~~~~-l~ 158 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV----------RVSRELA-GHTGYLSCCRF-------LDDNQ-IV 158 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC----------EEEEEEE-CCSSCEEEEEE-------EETTE-EE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc----------eeEEEec-CCCccEEEEEE-------CCCCc-EE
Confidence 358899999999999999999999999998764210 0112233 46678888887 44654 88
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+ |+.|++||+++ +.... .+.+|...
T Consensus 159 s~s~d~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~----~~~~h~~~ 228 (340)
T 1got_B 159 TSSGDTTCALWDIETGQQTTTFTGHTG-----DVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ----TFTGHESD 228 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEE----EECCCSSC
T ss_pred EEECCCcEEEEECCCCcEEEEEcCCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEE----EEcCCcCC
Confidence 999999999999999999988887655 899999999999999988 99999999986 55544 57889999
Q ss_pred eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
|.+++|+|+++ +|++|+.||.|++||+++++.+..+.. +...|.+++|+|+|++|++++ .|+.|++||+.. +..+
T Consensus 229 v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~-~~~~ 305 (340)
T 1got_B 229 INAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK-ADRA 305 (340)
T ss_dssp EEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT-CCEE
T ss_pred EEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEccc-CcEe
Confidence 99999999999 999999999999999999887776642 335799999999999999999 899999999987 6677
Q ss_pred eeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305 239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 275 (334)
..+.+| ...+.+++|+|+|.+|++|+.|+.|++||
T Consensus 306 ~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 777776 66899999999999999999999999997
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-41 Score=286.77 Aligned_cols=275 Identities=13% Similarity=0.120 Sum_probs=232.2
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
+.+++|++ ..+++++.|+.|++|++.+++.. ..+...+...|.+++| +|++++|+++
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~--------------~~~~~~~~~~v~~v~~-------s~~~~~l~~~ 152 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVS--------------ALAETDESTYVASVKW-------SHDGSFLSVG 152 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEE--------------EEEECCTTCCEEEEEE-------CTTSSEEEEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEe--------------EeeecCCCCCEEEEEE-------CCCCCEEEEE
Confidence 34566765 45788889999999999998875 3555557788999888 6699999999
Q ss_pred eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305 84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS 162 (334)
Q Consensus 84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~ 162 (334)
+.||.|++||+.+++.+..+..+.. .|.+++|+ +++|++++ |+.|++||++....... .+.+|...|.
T Consensus 153 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~v~ 221 (401)
T 4aez_A 153 LGNGLVDIYDVESQTKLRTMAGHQA-----RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIG----TLQGHSSEVC 221 (401)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE----EEECCSSCEE
T ss_pred CCCCeEEEEECcCCeEEEEecCCCC-----ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceee----EEcCCCCCee
Confidence 9999999999999999988886554 89999994 56888887 99999999986444444 5778999999
Q ss_pred EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee--cCCCeEEEEEccCCCcccee
Q psy2305 163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA--RKDCEIICWDLRNPGCILHT 240 (334)
Q Consensus 163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~d~~i~iwd~~~~~~~~~~ 240 (334)
+++|+|+++ +|++++.|+.|++||+++++.+..+..|...|.+++|+|++..+++.+ ..|+.|++||+++ +..+..
T Consensus 222 ~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~ 299 (401)
T 4aez_A 222 GLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNT 299 (401)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEE
T ss_pred EEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEE
Confidence 999999999 999999999999999999999999999999999999999876555532 1599999999997 666666
Q ss_pred ecccccCCceEEEEecCCCceEEe--eecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305 241 FPRQVSTNQRVYFDLTSCSNYLLS--GNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL 318 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~ 318 (334)
+. ....+.+++|+|+++++++ |+.||.|++||+.++.. .....+.+|...|.+++| +|++
T Consensus 300 ~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~----------~~~~~~~~h~~~v~~~~~--s~dg--- 361 (401)
T 4aez_A 300 VD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL----------TKQVDIPAHDTRVLYSAL--SPDG--- 361 (401)
T ss_dssp EE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE----------EEEEEEECCSSCCCEEEE--CTTS---
T ss_pred Ee---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc----------eeEEEecCCCCCEEEEEE--CCCC---
Confidence 65 2557899999999999998 55899999999988632 344457789999999999 9999
Q ss_pred eeeEEeeecceeeee
Q psy2305 319 LVADATCSGQITNVK 333 (334)
Q Consensus 319 ~~~l~t~~~d~~i~~ 333 (334)
++|++++.||.+++
T Consensus 362 -~~l~s~~~dg~i~i 375 (401)
T 4aez_A 362 -RILSTAASDENLKF 375 (401)
T ss_dssp -SEEEEECTTSEEEE
T ss_pred -CEEEEEeCCCcEEE
Confidence 99999999999875
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.4e-41 Score=280.12 Aligned_cols=278 Identities=16% Similarity=0.214 Sum_probs=230.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|.+++|+|||++++++..++.+.+|........ .....|...|.+++| +|++++|+
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~h~~~v~~~~~-------~~~~~~l~ 67 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---------------INTLNHGEVVCAVTI-------SNPTRHVY 67 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE---------------EEEECCSSCCCEEEE-------CSSSSEEE
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCcccc---------------ceeccCCCceEEEEE-------ecCCcEEE
Confidence 36889999999999999887776666644433221 223357788888887 67999999
Q ss_pred EeeCCCcEEEEeCCCCee---eEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEI---KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
+++ ||.|++||+.+++. ...+....+.. .|.+++|+|++++|++++ |+.|++||+......... .+..|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~ 140 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN---YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA---ELTSS 140 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTS---BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE---EEECS
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCC---cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee---ecccC
Confidence 998 99999999987653 33333222222 899999999999999887 999999999873322222 46778
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~ 237 (334)
...+.+++|+|+++ ++++++.||.|++||+++++.+..+..|...+.+++|+|++++|++++ .|+.|++||++. ++.
T Consensus 141 ~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~~ 217 (337)
T 1gxr_A 141 APACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLRE-GRQ 217 (337)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT-TEE
T ss_pred CCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCC-Cce
Confidence 89999999999999 999999999999999999999999999999999999999999999999 899999999997 555
Q ss_pred ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccc
Q psy2305 238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERD 317 (334)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~ 317 (334)
+..+. ....+.+++|+|++++|++++.++.|++||+.++ ....+..|...|.+++| +|++
T Consensus 218 ~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~v~~~~~--~~~~-- 277 (337)
T 1gxr_A 218 LQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-------------DKYQLHLHESCVLSLKF--AYCG-- 277 (337)
T ss_dssp EEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-------------CEEEECCCSSCEEEEEE--CTTS--
T ss_pred Eeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------CeEEEcCCccceeEEEE--CCCC--
Confidence 55543 3567889999999999999999999999999986 23467788999999999 9999
Q ss_pred ceeeEEeeecceeeee
Q psy2305 318 LLVADATCSGQITNVK 333 (334)
Q Consensus 318 ~~~~l~t~~~d~~i~~ 333 (334)
++|++++.||.+++
T Consensus 278 --~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 278 --KWFVSTGKDNLLNA 291 (337)
T ss_dssp --SEEEEEETTSEEEE
T ss_pred --CEEEEecCCCcEEE
Confidence 99999999999875
No 46
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.6e-41 Score=278.21 Aligned_cols=247 Identities=14% Similarity=0.213 Sum_probs=200.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|++++|+|+|++||+|+.|++|+|||+.++... ....+. .|...|.+++|+| ..++++|+
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~------------~~~~l~-gH~~~V~~v~~~~-----~~~~~~l~ 75 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI------------LIADLR-GHEGPVWQVAWAH-----PMYGNILA 75 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE------------EEEEEE-CCSSCEEEEEECC-----GGGSSCEE
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE------------EEEEEc-CCCccEEEEEeCC-----CCCCCEEE
Confidence 57999999999999999999999999999876432 112344 4668899999843 12488999
Q ss_pred EeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCe-eeeeccccc
Q psy2305 82 CSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRE-CVSRNLKPW 155 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~ 155 (334)
+++.|++|++||+++++ ....+..|.. .|.+++|+|+ +.+|++++ |+.|++||++..... ... ...
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~---~~~ 147 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDS-----SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK---INN 147 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSS-----CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC---BTT
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCC-----ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee---eec
Confidence 99999999999998874 4455555443 8999999998 78899987 999999999863222 111 467
Q ss_pred ccccceEEEEEcCC-----------------CCcEEEEeecCCeEEEEECCCC---CceEeeccCCCCeEEEEEccCC--
Q psy2305 156 FRKNIVSAIAINPV-----------------HPDICALGTYSKIIGLFSDSDG---RPLFFLKGHNGGITHLEFSSNG-- 213 (334)
Q Consensus 156 ~~~~~v~~~~~~~~-----------------~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-- 213 (334)
+|...+.+++|+|+ ++ +|++|+.|+.|++||++.. +++..+.+|...|.+++|+|++
T Consensus 148 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~ 226 (316)
T 3bg1_A 148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL 226 (316)
T ss_dssp SSSSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC
T ss_pred cccCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC
Confidence 89999999999998 35 8999999999999999755 4667789999999999999986
Q ss_pred --cEEEeeecCCCeEEEEEccCCC---ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 214 --ILLFSGARKDCEIICWDLRNPG---CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 214 --~~l~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
++|++++ .|++|++||++... .....+..+ ...+.+++|+|++++|++++.|+.|++|+...
T Consensus 227 ~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 227 PTSTIASCS-QDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SCCEEEEEE-TTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCceEEEEc-CCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 7899999 89999999997521 112233333 66789999999999999999999999999764
No 47
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-39 Score=280.49 Aligned_cols=272 Identities=17% Similarity=0.211 Sum_probs=229.1
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee-eeceeEEEEEEecccceecCCCcEEEE
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI-KEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
++.|+||+++ +||+|. |++|+|||..+++.. ..+.. .|...|++++| +|+|++|++
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~--------------~~~~~~~~~~~V~sv~f-------spdg~~las 164 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL--------------QLLQMEQPGEYISSVAW-------IKEGNYLAV 164 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE--------------EEEECCSTTCCEEEEEE-------CTTSSEEEE
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEE--------------EEEEecCCCCcEEEEEE-------CCCCCEEEE
Confidence 5679999864 777775 899999999999875 34443 35678999888 679999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV 161 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 161 (334)
|+.||.|++||+.+++.+..+..|.. .+.+++++ +..|++|+ |+.+++||......... .+.+|...+
T Consensus 165 gs~Dg~v~iWd~~~~~~~~~~~~h~~-----~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~----~~~~h~~~~ 233 (420)
T 4gga_A 165 GTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVA----TLSGHSQEV 233 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE----EEECCSSCE
T ss_pred EECCCeEEEEEcCCCcEEEEEeCCCC-----ceEEEeeC--CCEEEEEeCCCceeEeeecccceeeE----Eecccccce
Confidence 99999999999999999999887654 67777664 67899888 99999999987444444 578899999
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCC----ceEeeccCCCCeEEEEEccCCc-EEEe--eecCCCeEEEEEccCC
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGR----PLFFLKGHNGGITHLEFSSNGI-LLFS--GARKDCEIICWDLRNP 234 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~~d~~i~iwd~~~~ 234 (334)
..+.++|++. ++++++.|+.+++|+..+++ .+.....|...|.+++|+|++. .+++ |+ .|++|++||+++
T Consensus 234 ~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs-~D~~I~iwd~~t- 310 (420)
T 4gga_A 234 CGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-SDRHIRIWNVCS- 310 (420)
T ss_dssp EEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT-TTCEEEEEETTT-
T ss_pred eeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec-CCCEEEEEeCCc-
Confidence 9999999999 99999999999999998764 3556678999999999999765 4443 45 699999999998
Q ss_pred CccceeecccccCCceEEEEecCCCceEEeee--cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccC
Q psy2305 235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN--TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH 312 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s 312 (334)
+.....+.. ...+.++.|+|+++.+++++ .|+.|+|||+.++ +++..+.+|.+.|++++| +
T Consensus 311 ~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~------------~~v~~l~gH~~~V~~l~~--s 373 (420)
T 4gga_A 311 GACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------AKVAELKGHTSRVLSLTM--S 373 (420)
T ss_dssp TEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------CEEEEECCCSSCEEEEEE--C
T ss_pred cccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC------------cEEEEEcCCCCCEEEEEE--c
Confidence 666666654 45678889999999888765 6899999999998 788999999999999999 9
Q ss_pred CCcccceeeEEeeecceeeee
Q psy2305 313 KFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 313 ~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|++ ++|||||.|++|++
T Consensus 374 pdg----~~l~S~s~D~tvri 390 (420)
T 4gga_A 374 PDG----ATVASAAADETLRL 390 (420)
T ss_dssp TTS----SCEEEEETTTEEEE
T ss_pred CCC----CEEEEEecCCeEEE
Confidence 999 99999999999975
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.2e-41 Score=283.61 Aligned_cols=297 Identities=8% Similarity=-0.036 Sum_probs=208.6
Q ss_pred ceeEEEEcCCCcEEEEeeCC-------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce--e
Q psy2305 3 IEEDVDEAPDGTCLLTNSND-------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS--I 73 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~ 73 (334)
||++++|+|||++|++|+.+ +.|++|++............ ......+. .+...+.++++....+. .
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~----~~~~~~l~-~~~~~v~s~~~~~~~~~~g~ 90 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH----ILSEFALE-DNDDSPTAIDASKGIILVGC 90 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE----EEEEEECC-TTSCCCCEEEEETTEEEEEC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee----eeeEEEcc-CCCCceEEEEeCCCEEEEEE
Confidence 69999999999999998753 36999998766432000000 00000111 12334545544221111 1
Q ss_pred cCCCcEEEEeeCCCcEEEEeCCCCee----eEEEcCccccccccceeEEEEcCCCCEEEEe--e-CCcEEEEEcCCCCCe
Q psy2305 74 DGFTSYFLCSSMYAPIHLWDSVGGEI----KATYRPYNQVDEVTHAYSLAFSLDGNKIYAG--F-LSEVKIFSTDRPGRE 146 (334)
Q Consensus 74 s~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-d~~i~i~d~~~~~~~ 146 (334)
++++..|++++.|+.+++|++.+... ...............+.+++|+|||++++++ + |++|++||+.+ +..
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~-~~~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD-LTE 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT-TEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC-CcE
Confidence 11222333445678899998765432 2222222222222268899999999998743 4 89999999986 444
Q ss_pred eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGARKDC 224 (334)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 224 (334)
.. . ..|...|.+++|+|+|+ ++++++. +.+.+|+..+++.+. ....|...|.+++|+|+++++++++ .|+
T Consensus 170 ~~----~-~~~~~~V~~v~fspdg~-~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s-~d~ 241 (365)
T 4h5i_A 170 KF----E-IETRGEVKDLHFSTDGK-VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS-LKK 241 (365)
T ss_dssp EE----E-EECSSCCCEEEECTTSS-EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE-ESS
T ss_pred EE----E-eCCCCceEEEEEccCCc-eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe-cCC
Confidence 43 2 34778899999999999 9998874 556777777776554 3456888999999999999999998 676
Q ss_pred ----eEEEEEccCCCcc---ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce-
Q psy2305 225 ----EIICWDLRNPGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK- 296 (334)
Q Consensus 225 ----~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~- 296 (334)
.+++|++...... ...+.. +...+.+++|+|+|++||+|+.|++|+|||++++ +++..
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~------------~~~~~~ 307 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTN--RFKGITSMDVDMKGELAVLASNDNSIALVKLKDL------------SMSKIF 307 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEES--SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT------------EEEEEE
T ss_pred cceeEEeecccccceecceeeeeecC--CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC------------cEEEEe
Confidence 6888998762221 122333 3667899999999999999999999999999998 66766
Q ss_pred ecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 297 FSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.+|...|++++| +||+ ++||+||.|++|++
T Consensus 308 ~~gH~~~V~~v~f--Spdg----~~laS~S~D~tvrv 338 (365)
T 4h5i_A 308 KQAHSFAITEVTI--SPDS----TYVASVSAANTIHI 338 (365)
T ss_dssp TTSSSSCEEEEEE--CTTS----CEEEEEETTSEEEE
T ss_pred cCcccCCEEEEEE--CCCC----CEEEEEeCCCeEEE
Confidence 4789999999999 9999 99999999999986
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.9e-40 Score=279.89 Aligned_cols=243 Identities=19% Similarity=0.258 Sum_probs=204.8
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|++++|+|+|++||+|+.|+.|++||+.+++.. ..+. .|...|.+++| +|++++|++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--------------~~~~-~h~~~v~~~~~-------~p~~~~l~s 182 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--------------MILQ-GHEQDIYSLDY-------FPSGDKLVS 182 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEE-------CTTSSEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--------------EEEc-cCCCCEEEEEE-------cCCCCEEEE
Confidence 3899999999999999999999999999988765 3444 46678988888 669999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecc---ccccc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNL---KPWFR 157 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~~~ 157 (334)
++.|++|++||+.+++....+.... .+.+++|+| ++++|++++ |+.|++||+++ +........ ...+|
T Consensus 183 ~s~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h 255 (393)
T 1erj_A 183 GSGDRTVRIWDLRTGQCSLTLSIED------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGH 255 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCC
T ss_pred ecCCCcEEEEECCCCeeEEEEEcCC------CcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCC
Confidence 9999999999999998877776432 789999999 899999988 99999999986 444432110 12578
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC------------CceEeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG------------RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE 225 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 225 (334)
...|.+++|+|+++ +|++|+.|+.|++||+++. .+...+.+|...|.+++|+|++++|++++ .|+.
T Consensus 256 ~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~ 333 (393)
T 1erj_A 256 KDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRG 333 (393)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSE
T ss_pred CCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCe
Confidence 99999999999999 9999999999999999753 34566788999999999999999999999 8999
Q ss_pred EEEEEccCCCccceeecccccCCceEEEEecC------CCceEEeeecCCcEEEEeCCCC
Q psy2305 226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLTS------CSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
|++||+++ +.++..+.+| ...+.+++|++ ++++|++|+.||+|++|++...
T Consensus 334 v~iwd~~~-~~~~~~l~~h--~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 334 VLFWDKKS-GNPLLMLQGH--RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEETTT-CCEEEEEECC--SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEECCC-CeEEEEECCC--CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99999998 7777788776 56788888775 7899999999999999998653
No 50
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.8e-40 Score=304.26 Aligned_cols=277 Identities=15% Similarity=0.191 Sum_probs=241.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|+|++||+++.||.|+|||+.+++.. ..+. .|...|.+++| +|++++|+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~--------------~~~~-~~~~~v~~~~~-------s~~~~~l~ 71 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--------------RSIQ-VTETPVRAGKF-------IARKNWII 71 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------------EEEE-CCSSCEEEEEE-------EGGGTEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE--------------EEEe-cCCCcEEEEEE-------eCCCCEEE
Confidence 57999999999999999999999999999988765 3444 46678998888 66999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.||.|++||+.+++.+..+..+.. .|++++|+|++++|++++ |+.|++||+.. +..... .+.+|...
T Consensus 72 ~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~---~~~~~~~~ 142 (814)
T 3mkq_A 72 VGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQ---TFEGHEHF 142 (814)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGG-TSEEEE---EEECCSSC
T ss_pred EEeCCCeEEEEECCCCcEEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCC-CceEEE---EEcCCCCc
Confidence 999999999999999999888877554 899999999999999888 99999999986 333333 57789999
Q ss_pred eEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeeccCC-CCeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCc
Q psy2305 161 VSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-GGITHLEFSS--NGILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 161 v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
|.+++|+| ++. .+++++.||.|++||+++++....+..+. ..+.+++|+| ++.+|++++ .|+.|++||+++ +.
T Consensus 143 v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~ 219 (814)
T 3mkq_A 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQT-KS 219 (814)
T ss_dssp EEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTT-TE
T ss_pred EEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCC-Cc
Confidence 99999999 777 99999999999999999888877776555 8899999999 999999999 899999999987 67
Q ss_pred cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER 316 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~ 316 (334)
.+..+..| ...+.+++|+|++++|++++.||.|++||+.++ +.+..+..|...+.+++| +|++
T Consensus 220 ~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~------------~~~~~~~~~~~~v~~~~~--~~~~- 282 (814)
T 3mkq_A 220 CVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY------------KVEKTLNVGLERSWCIAT--HPTG- 282 (814)
T ss_dssp EEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------------SEEEEECCSSSSEEEEEE--CTTC-
T ss_pred EEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------cEEEEeecCCCcEEEEEE--ccCC-
Confidence 67777665 567889999999999999999999999999987 677888888899999999 9998
Q ss_pred ccee--eEEeeecceeee
Q psy2305 317 DLLV--ADATCSGQITNV 332 (334)
Q Consensus 317 ~~~~--~l~t~~~d~~i~ 332 (334)
. ++++++.++.+.
T Consensus 283 ---~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 283 ---RKNYIASGFDNGFTV 297 (814)
T ss_dssp ---GGGEEEEEETTEEEE
T ss_pred ---CceEEEEEeCCCEEE
Confidence 6 467776666543
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-39 Score=279.41 Aligned_cols=288 Identities=10% Similarity=0.087 Sum_probs=226.8
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
+....|+|++++|++++.||.|++||+.+++.. ..+ ..|...|.+++| +|++++|+++
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------------~~~-~~h~~~v~~~~~-------~~~~~~l~s~ 157 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--------------EID-QAHVSEITKLKF-------FPSGEALISS 157 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--------------EET-TSSSSCEEEEEE-------CTTSSEEEEE
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCCCccee--------------eec-ccccCccEEEEE-------CCCCCEEEEE
Confidence 445578999999999999999999999877654 222 246788999888 6699999999
Q ss_pred eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc---
Q psy2305 84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN--- 159 (334)
Q Consensus 84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~--- 159 (334)
+.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++++ |+.|++||+++ ++...... ....+..
T Consensus 158 s~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~-~~~~~~~~v~ 230 (420)
T 3vl1_A 158 SQDMQLKIWSVKDGSNPRTLIGHRA-----TVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFN-RKENPHDGVN 230 (420)
T ss_dssp ETTSEEEEEETTTCCCCEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEEC-BTTBTTCCEE
T ss_pred eCCCeEEEEeCCCCcCceEEcCCCC-----cEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEee-cCCCCCCCcc
Confidence 9999999999999998888877555 899999999999999987 99999999986 44444321 1122333
Q ss_pred ------------------ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCc-EEEee
Q psy2305 160 ------------------IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGI-LLFSG 219 (334)
Q Consensus 160 ------------------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~ 219 (334)
.+.+++|+|+++ +|++++.||.|++||+++++....+. .|...|.+++|+|+++ +|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 444455678898 99999999999999999988777764 5788999999999999 99999
Q ss_pred ecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc
Q psy2305 220 ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA 299 (334)
Q Consensus 220 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 299 (334)
+ .||.|++||+++...++..+..+ +...+..+ +.+++++|++++.|+.|++|++...... ..-........+..
T Consensus 310 ~-~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~ 383 (420)
T 3vl1_A 310 Y-ENGMLAQWDLRSPECPVGEFLIN-EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESE---RPAIEFETPTFLVS 383 (420)
T ss_dssp E-TTSEEEEEETTCTTSCSEEEEES-TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCC---SCEECTTSCEEECC
T ss_pred e-CCCeEEEEEcCCCcCchhhhhcc-CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCC---ccceeccCccEEcc
Confidence 9 89999999999844556677654 24566666 4568899999999999999999875322 00000122234567
Q ss_pred cccccceeeeccCCCccccee---eEEeeecceeeee
Q psy2305 300 HQDCTNGVRWKHHKFERDLLV---ADATCSGQITNVK 333 (334)
Q Consensus 300 ~~~~i~~~~~~~s~~~~~~~~---~l~t~~~d~~i~~ 333 (334)
|.+.|.+++| +|++ + .|++++.+|.+.+
T Consensus 384 ~~~~v~~~~~--s~~~----~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 384 NDDAVSQFCY--VSDD----ESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp SSCCCCEEEE--ECCS----SSSCEEEEEETTTEEEE
T ss_pred CCcceEEEEE--ccCC----CCcceEEEEcCCceEEE
Confidence 8889999999 9999 8 6777777887764
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-39 Score=268.06 Aligned_cols=267 Identities=15% Similarity=0.118 Sum_probs=226.3
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++| |++++|++++.||.|++||+.+++.. ..+. .+...|.+++| +|++++|+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--------------~~~~-~~~~~v~~~~~-------~~~~~~l~ 75 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--------------TVVY-TGQGFLNSVCY-------DSEKELLL 75 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--------------EEEE-ECSSCEEEEEE-------ETTTTEEE
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--------------EEee-cCCccEEEEEE-------CCCCCEEE
Confidence 57999999 99999999999999999999877654 2333 45688988888 66999999
Q ss_pred EeeCCCcEEEEeCCCC---eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305 82 CSSMYAPIHLWDSVGG---EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
+++.|+.|++|++... +....+..+.. .|.+++| ++++|++++ |+.|++||. +.... .+..|
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~----~~~~~ 141 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGEDPLYTLIGHQG-----NVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVY----NLQAH 141 (313)
T ss_dssp EEETTSCEEEEETTCCTTSCC-CEECCCSS-----CEEEEEE--ETTEEEEEETTSEEEEEET---TEEEE----EEECC
T ss_pred EecCCCeEEEEEeeecCCCCcccchhhccc-----CEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEE----ecccC
Confidence 9999999999998654 44555655444 8999999 567888887 999999992 44444 56789
Q ss_pred ccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeecc-CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305 158 KNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235 (334)
Q Consensus 158 ~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~ 235 (334)
...+.++.|.| ++. ++++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++ .|+.|++||+++ +
T Consensus 142 ~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~-~ 215 (313)
T 3odt_A 142 NASVWDAKVVSFSEN-KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHT-G 215 (313)
T ss_dssp SSCEEEEEEEETTTT-EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTT-C
T ss_pred CCceeEEEEccCCCC-EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCc-h
Confidence 99999999998 777 999999999999999 4556667766 899999999999998 88898 899999999998 7
Q ss_pred ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE 315 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~ 315 (334)
+.+..+..| ...+.+++|+|++ .|++++.||.|++||+.++ +.+..+..|...|.+++| +|++
T Consensus 216 ~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~--~~~~ 278 (313)
T 3odt_A 216 DVLRTYEGH--ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG------------SLKQVITLPAISIWSVDC--MSNG 278 (313)
T ss_dssp CEEEEEECC--SSCEEEEEECTTS-CEEEEETTSEEEEECTTTC------------CEEEEEECSSSCEEEEEE--CTTS
T ss_pred hhhhhhhcC--CceEEEEEEecCC-CEEEEecCCEEEEEECCCC------------ceeEEEeccCceEEEEEE--ccCC
Confidence 777777765 6678999999999 6889999999999999998 678888889999999999 9999
Q ss_pred ccceeeEEeeecceeeee
Q psy2305 316 RDLLVADATCSGQITNVK 333 (334)
Q Consensus 316 ~~~~~~l~t~~~d~~i~~ 333 (334)
+ +++++.||.|++
T Consensus 279 ----~-~~~~~~dg~i~i 291 (313)
T 3odt_A 279 ----D-IIVGSSDNLVRI 291 (313)
T ss_dssp ----C-EEEEETTSCEEE
T ss_pred ----C-EEEEeCCCcEEE
Confidence 7 667999999875
No 53
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-39 Score=272.14 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=205.8
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.+++|+|+|.+|++++.|+.+++|++...... ........+. .|...|.+++| +|+++.|++
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~--------~~~~~~~~~~-~h~~~v~~~~~-------~~~~~~l~t 171 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE--------NMAAKKKSVA-MHTNYLSACSF-------TNSDMQILT 171 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC--------CSGGGCEEEE-ECSSCEEEEEE-------CSSSSEEEE
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc--------cccccceeee-ccCCcEEEEEE-------eCCCCEEEE
Confidence 5889999999999999999999999998754321 0011112333 46678888887 668999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC--CCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL--DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++.|++|++||+++++.+..+..|.. .|.+++|+| ++++|++|+ |+.|++||+++ ++... .+..|..
T Consensus 172 ~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~----~~~~h~~ 241 (354)
T 2pbi_B 172 ASGDGTCALWDVESGQLLQSFHGHGA-----DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQ----AFETHES 241 (354)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEE----EECCCSS
T ss_pred EeCCCcEEEEeCCCCeEEEEEcCCCC-----CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEE----EecCCCC
Confidence 99999999999999999998887665 899999988 468999888 99999999997 55554 5788999
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC--CCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH--NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~ 237 (334)
.|.+++|+|++. +|++++.|++|++||+++++.+..+..+ ...+.+++|+|++++|++++ .|+.|++||+.+ +..
T Consensus 242 ~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~-~~~ 318 (354)
T 2pbi_B 242 DVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK-GSR 318 (354)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-CSE
T ss_pred CeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC-Cce
Confidence 999999999999 9999999999999999988777666533 34789999999999999999 899999999987 666
Q ss_pred ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305 238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275 (334)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 275 (334)
+..+.+| ...+.+++|+|+|++|++|+.|++|++|+
T Consensus 319 ~~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 319 VSILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 7777766 67899999999999999999999999996
No 54
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-39 Score=268.17 Aligned_cols=240 Identities=17% Similarity=0.201 Sum_probs=200.6
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|+|++|++|+.|++|++||+.+++.. ..+. .|...|.+++| +|++++|+
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~~~l~ 123 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETY--------------QRFV-GHKSDVMSVDI-------DKKASMII 123 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------------EEEE-CCSSCEEEEEE-------CTTSCEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee--------------EEEc-cCCCcEEEEEE-------cCCCCEEE
Confidence 46899999999999999999999999999998765 3444 35678988887 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC------CEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG------NKIYAGF-LSEVKIFSTDRPGRECVSRNLKP 154 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 154 (334)
+++.|+.|++||+. ++.+..+..+.. .|.+++|+|.. ..|++++ |+.|++||++. .+... .+
T Consensus 124 s~s~D~~i~vwd~~-~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~----~~ 192 (319)
T 3frx_A 124 SGSRDKTIKVWTIK-GQCLATLLGHND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEA----DF 192 (319)
T ss_dssp EEETTSCEEEEETT-SCEEEEECCCSS-----CEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEE----EE
T ss_pred EEeCCCeEEEEECC-CCeEEEEeccCC-----cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhe----ee
Confidence 99999999999985 556666766544 89999999854 4788887 99999999985 44333 57
Q ss_pred cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305 155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP 234 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~ 234 (334)
.+|...|.+++|+|+++ +|++++.||.|++||+++++.+..+.. ...|.+++|+|++.+|++++ +..+++|++..
T Consensus 193 ~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~- 267 (319)
T 3frx_A 193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDP- 267 (319)
T ss_dssp CCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETT-
T ss_pred cCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCc-
Confidence 88999999999999999 999999999999999999999888875 46899999999999999887 55699999986
Q ss_pred Cccceeeccc------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 235 GCILHTFPRQ------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 235 ~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
...+..+..+ .....+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 4444443321 12456788999999999999999999999998764
No 55
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=273.09 Aligned_cols=259 Identities=14% Similarity=0.161 Sum_probs=204.5
Q ss_pred eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEE-cCccccccccceeEEEEcCCCCEEEE
Q psy2305 51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATY-RPYNQVDEVTHAYSLAFSLDGNKIYA 129 (334)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~ 129 (334)
..+.+|....|+.++| +|++++|++++.|+.|+|||+.++...... ....|.. .|.+++|+|++++|++
T Consensus 9 ~~~~~h~~~~v~~l~~-------sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~g~~l~s 78 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAW-------NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR---TVRKVAWSPCGNYLAS 78 (345)
T ss_dssp EEECCSTTSCEEEEEE-------CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS---CEEEEEECTTSSEEEE
T ss_pred eeecCCCCCcEEEEEE-------CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC---cEEEEEECCCCCEEEE
Confidence 4555555558888888 779999999999999999999887643222 1112322 8999999999999999
Q ss_pred ee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeeccCCCCeE
Q psy2305 130 GF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKGHNGGIT 205 (334)
Q Consensus 130 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~ 205 (334)
++ |+.+++||+......... .+.+|...|.+++|+|+++ +|++++.|+.|++||++++. .+..+.+|...|.
T Consensus 79 ~s~D~~v~iw~~~~~~~~~~~---~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFECVT---TLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp EETTSCEEEEEECCC-EEEEE---EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred EECCCcEEEEEccCCCeEEEE---EccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 98 999999999863222222 5788999999999999999 99999999999999998764 4566788999999
Q ss_pred EEEEccCCcEEEeeecCCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC
Q psy2305 206 HLEFSSNGILLFSGARKDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS 283 (334)
Q Consensus 206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 283 (334)
+++|+|++++|++++ .|+.|++||.+. +. ....+.+| ...+.+++|+|+|++|++++.|++|++|+........
T Consensus 155 ~~~~~p~~~~l~s~s-~d~~i~~w~~~~-~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 155 HVVWHPSQELLASAS-YDDTVKLYREEE-DDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp EEEECSSSSCEEEEE-TTSCEEEEEEET-TEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred EEEECCCCCEEEEEe-CCCcEEEEEecC-CCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence 999999999999999 899999999986 43 33455555 6789999999999999999999999999975432110
Q ss_pred C---CCccccccccceecc-cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 284 S---PYEESVQEPLYKFSA-HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 284 ~---~~~~~~~~~~~~~~~-~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
. ......++.+..+.+ |...|.+++| +|++ ..|++++.|+.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~----~~l~s~~~d~~i~v 278 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAW--CQLT----GALATACGDDAIRV 278 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEE--CTTT----CCEEEEETTSCEEE
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEE--ecCC----CEEEEEeCCCeEEE
Confidence 0 001111233344444 7789999999 9999 99999999998875
No 56
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=264.57 Aligned_cols=272 Identities=16% Similarity=0.182 Sum_probs=223.6
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee-eeceeEEEEEEecccceecCCCcEEEE
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI-KEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.++|+||+++ +||+| .|++|+|||+.+++.. ..+.. .|...|.+++| +|++++|++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~--------------~~~~~~~~~~~V~~v~~-------~~~~~~l~s 84 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL--------------QLLQMEQPGEYISSVAW-------IKEGNYLAV 84 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE--------------EEEECCSTTCCEEEEEE-------CTTSSEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE--------------EEEEecCCCCeEEEEEE-------CCCCCEEEE
Confidence 4679999986 77776 5899999999999876 34443 35677998888 679999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV 161 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 161 (334)
|+.|+.|++||+++++.+..+..|.. .+.+ +++++..+++++ ++.+++|+......... .+.+|...+
T Consensus 85 gs~Dg~v~iw~~~~~~~~~~~~~h~~-----~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 153 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVA----TLSGHSQEV 153 (318)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSS-----CEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEE----EEECCSSCE
T ss_pred EECCCcEEEeecCCceeEEEecCccc-----eEEE--eecCCCEEEEEecCCceEeeecCCCceeEE----EEcCccCce
Confidence 99999999999999999998887543 4444 555677899887 99999999987444444 578899999
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCCc----eEeeccCCCCeEEEEEccCCcEE---EeeecCCCeEEEEEccCC
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRP----LFFLKGHNGGITHLEFSSNGILL---FSGARKDCEIICWDLRNP 234 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l---~~~~~~d~~i~iwd~~~~ 234 (334)
..+.++++++ ++++++.|+.|++||+++++. ......+.+.|.+++++|++..+ ++++ .++.|++||.+.
T Consensus 154 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~i~lwd~~~- 230 (318)
T 4ggc_A 154 CGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-SDRHIRIWNVCS- 230 (318)
T ss_dssp EEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT-TTCEEEEEETTT-
T ss_pred EEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC-CCCEEEEEeccc-
Confidence 9999999999 999999999999999987653 34456688899999999977643 3566 789999999987
Q ss_pred CccceeecccccCCceEEEEecCCCceEEeee--cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccC
Q psy2305 235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN--TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH 312 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s 312 (334)
........ ....+..+.|+|++..+++++ .|+.|++||+.++ +++..+.+|.+.|++++| +
T Consensus 231 ~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~------------~~~~~l~gH~~~V~~l~~--s 293 (318)
T 4ggc_A 231 GACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------AKVAELKGHTSRVLSLTM--S 293 (318)
T ss_dssp CCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------CEEEEECCCSSCEEEEEE--C
T ss_pred cccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC------------cEEEEEcCCCCCEEEEEE--c
Confidence 44333332 355677888999998887654 7999999999998 788999999999999999 9
Q ss_pred CCcccceeeEEeeecceeeee
Q psy2305 313 KFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 313 ~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|++ ++|||||.||+|++
T Consensus 294 pdg----~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 294 PDG----ATVASAAADETLRL 310 (318)
T ss_dssp TTS----SCEEEEETTTEEEE
T ss_pred CCC----CEEEEEecCCeEEE
Confidence 999 99999999999985
No 57
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.3e-39 Score=265.00 Aligned_cols=244 Identities=12% Similarity=0.161 Sum_probs=198.7
Q ss_pred eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC--CeeeEEEcCccccccccceeEEEEcCC--CCEEEEee
Q psy2305 56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG--GEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF 131 (334)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~ 131 (334)
.|...|.+++| +|+|++|++++.|++|++||+.. .+.+..+..|.. .|++++|+|+ +++|++++
T Consensus 7 ~h~~~V~~~~~-------s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~s 74 (297)
T 2pm7_B 7 AHNEMIHDAVM-------DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS 74 (297)
T ss_dssp SCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEE
T ss_pred CCcCceEEEEE-------CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEEc
Confidence 46788988887 77999999999999999999874 356777877655 8999999864 88999988
Q ss_pred -CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCC--ceEeeccCCCCeEE
Q psy2305 132 -LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNGGITH 206 (334)
Q Consensus 132 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~ 206 (334)
|++|++||++........ .+..|...|.+++|+|+ +. +|++++.|+.|++||++++. ....+.+|...|.+
T Consensus 75 ~D~~v~iWd~~~~~~~~~~---~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 75 YDGKVMIWKEENGRWSQIA---VHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (297)
T ss_dssp TTTEEEEEEBSSSCBCCCE---EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred CCCEEEEEEcCCCceEEEE---EeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence 999999999862211111 45779999999999998 77 99999999999999998763 24567889999999
Q ss_pred EEEccC-------------CcEEEeeecCCCeEEEEEccCCCc---cceeecccccCCceEEEEecCCC---ceEEeeec
Q psy2305 207 LEFSSN-------------GILLFSGARKDCEIICWDLRNPGC---ILHTFPRQVSTNQRVYFDLTSCS---NYLLSGNT 267 (334)
Q Consensus 207 ~~~~~~-------------~~~l~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~ 267 (334)
++|+|+ +++|++++ .|+.|++||++.... ....+.+| ...+.+++|+|++ .+|++++.
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEECCCC------------CCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEET
T ss_pred EeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEEC
Confidence 999997 57999999 899999999987322 34455555 6789999999984 89999999
Q ss_pred CCcEEEEeCCCCCCCCCCCcccccccccee--cccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 268 NGDLSIWNVNTSNLPSSPYEESVQEPLYKF--SAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 268 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|++|++||++..... .....+ ..|...|.+++| +|++ ++||+++.|++|++
T Consensus 228 D~~v~iWd~~~~~~~---------~~~~~~~~~~~~~~v~~~~~--s~~g----~~las~~~D~~v~l 280 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGP---------WKKTLLKEEKFPDVLWRASW--SLSG----NVLALSGGDNKVTL 280 (297)
T ss_dssp TSCEEEEEESSTTSC---------CEEEESSSSCCSSCEEEEEE--CSSS----CCEEEEETTSCEEE
T ss_pred CCcEEEEEeCCCCCc---------cceeeeecccCCCcEEEEEE--CCCC----CEEEEEcCCCcEEE
Confidence 999999999874211 111122 467788999999 9999 99999999999875
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.6e-39 Score=274.25 Aligned_cols=291 Identities=16% Similarity=0.165 Sum_probs=226.2
Q ss_pred CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcE
Q psy2305 2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSY 79 (334)
Q Consensus 2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~ 79 (334)
+.|.+++|+| ++++||+++.||.|++|++.++.....+....... ........|...|.+++| +| ++++
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~-------~~~~~~~ 114 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS--IGRDHPDVHRYSVETVQW-------YPHDTGM 114 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE--ECTTCTTCCSSCEEEEEE-------CTTCTTC
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc--ccccccccCCCcEEEEEE-------ccCCCcE
Confidence 5799999999 99999999999999999999877542110000000 000000136788999888 55 6779
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC---CEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305 80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG---NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW 155 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~ 155 (334)
|++++.|+.|++||+.+++....+.... .+.++.|+|.+ .++++++ ++.|++||+++ +.... .+.
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~----~~~ 183 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNFEE------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS-GSCSH----ILQ 183 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSS-SCCCE----EEC
T ss_pred EEEEeCCCeEEEeeCCCCccceeccCCC------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC-cceee----eec
Confidence 9999999999999999999888776322 78899999854 4888887 99999999986 44444 467
Q ss_pred ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC-ceEee---------------ccCCCCeEEEEEccCCcEEEee
Q psy2305 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR-PLFFL---------------KGHNGGITHLEFSSNGILLFSG 219 (334)
Q Consensus 156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~~~~~~~~~~~l~~~ 219 (334)
.|...|.+++|+|+++.++++++.||.|++||++++. .+..+ ..|...|.+++|+|++++|+++
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 8999999999999998568999999999999998765 33333 5688999999999999999999
Q ss_pred ecCCCeEEEEEccCCCccceeeccccc----CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc
Q psy2305 220 ARKDCEIICWDLRNPGCILHTFPRQVS----TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295 (334)
Q Consensus 220 ~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 295 (334)
+ .|+.|++||+++ +.....+..+.. ......+ ....+..+++++.++.|++||+.++ +.+.
T Consensus 264 ~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~d~~~~------------~~~~ 328 (408)
T 4a11_B 264 G-TDNRMRLWNSSN-GENTLVNYGKVCNNSKKGLKFTV-SCGCSSEFVFVPYGSTIAVYTVYSG------------EQIT 328 (408)
T ss_dssp E-TTSCEEEEETTT-CCBCCCCCCCCCCCCSSCCCCEE-CCSSSSCEEEEEETTEEEEEETTTC------------CEEE
T ss_pred c-CCCeEEEEECCC-CccceeccccccccccccceeEE-ecCCCceEEEEecCCEEEEEECcCC------------ccee
Confidence 9 899999999997 443333322111 1111122 2334566777788999999999998 7888
Q ss_pred eecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 296 KFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 296 ~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+.+|...|.+++| +|++ ++|++++.||.|++
T Consensus 329 ~~~~~~~~v~~~~~--s~~~----~~l~s~~~dg~i~i 360 (408)
T 4a11_B 329 MLKGHYKTVDCCVF--QSNF----QELYSGSRDCNILA 360 (408)
T ss_dssp EECCCSSCEEEEEE--ETTT----TEEEEEETTSCEEE
T ss_pred eeccCCCeEEEEEE--cCCC----CEEEEECCCCeEEE
Confidence 89999999999999 9999 99999999999875
No 59
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-39 Score=268.79 Aligned_cols=248 Identities=13% Similarity=0.145 Sum_probs=186.4
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|++++|+|++++||+|+.|++|+||++....... ........+. .|...|.+++| +|++++|+
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~-------~~~~~~~~~~-~h~~~V~~v~~-------sp~g~~la 123 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT-------FEMDLLAIIE-GHENEVKGVAW-------SNDGYYLA 123 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC--------------CCCEEEEEEC-----CEEEEEE-------CTTSCEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc-------ccceeEEEEc-CCCCcEEEEEE-------CCCCCEEE
Confidence 469999999999999999999999999986432100 0000112333 46678988888 67999999
Q ss_pred EeeCCCcEEEEeCCCC----eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 82 CSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+++.|++|++||+... +.+..+..|.. .|.+++|+|++++|++++ |+.|++||+......... .+.+
T Consensus 124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~---~~~~ 195 (330)
T 2hes_X 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQ-----DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA---VLNG 195 (330)
T ss_dssp EEETTSCEEEEECCTTCCCCEEEEEECCCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE---EECC
T ss_pred EEeCCCEEEEEeccCCCCCeEEEEEeccCCC-----ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEE---EccC
Confidence 9999999999999432 45566766554 899999999999999998 999999998752212222 5788
Q ss_pred cccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCC--------CceEeecc-CCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305 157 RKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDG--------RPLFFLKG-HNGGITHLEFSSNGILLFSGARKDCE 225 (334)
Q Consensus 157 ~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~ 225 (334)
|...|.+++|+|+ +. .|++++.|++|++||++.+ .....+.+ |...|.+++|++++ +|++++ .|+.
T Consensus 196 h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~-~dg~ 272 (330)
T 2hes_X 196 HEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG-ADGV 272 (330)
T ss_dssp CSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE-TTSC
T ss_pred CCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe-CCCE
Confidence 9999999999998 66 8999999999999998754 23444554 88999999999765 789999 8999
Q ss_pred EEEEEccCCCc--cceee-cccccCC-ceEEEEecC--CCceEEeeecCCcEEEEeCCC
Q psy2305 226 IICWDLRNPGC--ILHTF-PRQVSTN-QRVYFDLTS--CSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 226 i~iwd~~~~~~--~~~~~-~~~~~~~-~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~ 278 (334)
|++||... +. ..... ..| .. .+.+++|+| ++++|++++.||.|++||++.
T Consensus 273 v~iw~~~~-~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 273 LAVYEEVD-GEWKVFAKRALCH--GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEET-TEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEcCC-CceEEEecccccc--ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999986 42 22222 233 43 788899999 789999999999999999875
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.1e-39 Score=269.26 Aligned_cols=275 Identities=12% Similarity=0.083 Sum_probs=225.5
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l 80 (334)
+.|.+++|+|++++|++++.|+.|++|++.++... ........+...|.+++| +|+++ +|
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~------------~~~~~~~~~~~~v~~~~~-------~~~~~~~l 72 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------VDLLQSLRYKHPLLCCNF-------IDNTDLQI 72 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------EEEEEEEECSSCEEEEEE-------EESSSEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc------------ccceeeeecCCceEEEEE-------CCCCCcEE
Confidence 57999999999999999999999999999887621 001222356788999888 56899 99
Q ss_pred EEeeCCCcEEEEeC-CCCeeeEEEcC--ccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC-------Ceeee
Q psy2305 81 LCSSMYAPIHLWDS-VGGEIKATYRP--YNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG-------RECVS 149 (334)
Q Consensus 81 ~~~~~d~~i~iwd~-~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~-------~~~~~ 149 (334)
++++.||.|++||+ .+++. ..+.. +.. .|.+++|+| +++|++++ |+.|++||++... ....
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~-----~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~- 144 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF-QALTNNEANL-----GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS- 144 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE-EECBSCCCCS-----CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-
T ss_pred EEEcCCCeEEEEEeccCCce-EeccccCCCC-----ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee-
Confidence 99999999999999 77755 45554 443 899999999 99999887 9999999987410 1111
Q ss_pred ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CC--ceEeeccCCCCeEEEEEcc-CCcEEEeeecCCCe
Q psy2305 150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GR--PLFFLKGHNGGITHLEFSS-NGILLFSGARKDCE 225 (334)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~ 225 (334)
....|...+.+++|+|++ +++++.++.|++||+++ +. .......|...+.+++|+| ++++|++++ .||.
T Consensus 145 ---~~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~ 217 (342)
T 1yfq_A 145 ---NNTKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGR 217 (342)
T ss_dssp ---SSSSSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSE
T ss_pred ---eEEeeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-cCCc
Confidence 122388899999999884 88899999999999988 54 3334456888999999999 999999999 8999
Q ss_pred EEEEEccCC-----Cccceeeccccc-------CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccc
Q psy2305 226 IICWDLRNP-----GCILHTFPRQVS-------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP 293 (334)
Q Consensus 226 i~iwd~~~~-----~~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 293 (334)
+++|+++.. ......+..+.. ...+.+++|+|++++|++++.||.|++||+.++ +.
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------~~ 285 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR------------KK 285 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT------------EE
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH------------hH
Confidence 999999874 266667766533 347899999999999999999999999999988 67
Q ss_pred cceeccc-ccccceeeeccCCCcccceeeEEeeeccee
Q psy2305 294 LYKFSAH-QDCTNGVRWKHHKFERDLLVADATCSGQIT 330 (334)
Q Consensus 294 ~~~~~~~-~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~ 330 (334)
+..+.+| ...|.+++ |++ ++|++++.||.
T Consensus 286 ~~~~~~~h~~~v~~~~----~~~----~~l~s~s~Dg~ 315 (342)
T 1yfq_A 286 IKNFAKFNEDSVVKIA----CSD----NILCLATSDDT 315 (342)
T ss_dssp EEECCCCSSSEEEEEE----ECS----SEEEEEEECTH
T ss_pred hhhhhcccCCCceEec----CCC----CeEEEEecCCc
Confidence 8888888 88888877 789 99999999997
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-38 Score=267.09 Aligned_cols=242 Identities=16% Similarity=0.153 Sum_probs=192.1
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|++.+|++++.|++|++||+.+++.. ..+. .|...|.+++| +|++++|+
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~--------------~~~~-~h~~~v~~v~~-------sp~~~~l~ 134 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY--------------KRFV-GHQSEVYSVAF-------SPDNRQIL 134 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE--------------EEEE-CCCSCEEEEEE-------CSSTTEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE--------------EEEc-CCCCcEEEEEE-------CCCCCEEE
Confidence 46899999999999999999999999999988765 3444 36678988888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC----------CEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG----------NKIYAGF-LSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~-d~~i~i~d~~~~~~~~~~~ 150 (334)
+++.|+.|++||+.............+.. .|.+++|+|++ .+|++++ |+.|++||.. .....
T Consensus 135 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~-- 207 (343)
T 2xzm_R 135 SAGAEREIKLWNILGECKFSSAEKENHSD---WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRY-- 207 (343)
T ss_dssp EEETTSCEEEEESSSCEEEECCTTTSCSS---CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEE--
T ss_pred EEcCCCEEEEEeccCCceeeeecccCCCc---eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeE--
Confidence 99999999999997433322221112322 79999999987 6888887 9999999954 33333
Q ss_pred cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305 151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW 229 (334)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw 229 (334)
.+.+|...|.+++|+|+++ +|++|+.||.|++||+++. .....+. +...|.+++|+|++++++++. |+.|++|
T Consensus 208 --~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~--d~~v~iw 281 (343)
T 2xzm_R 208 --TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGT--DQGVKIF 281 (343)
T ss_dssp --EEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEE--SSCEEEE
T ss_pred --EEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEEC--CCCEEEE
Confidence 5778999999999999999 9999999999999999544 4444443 556799999999998887655 8889999
Q ss_pred EccCCCccce--eeccc---------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 230 DLRNPGCILH--TFPRQ---------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 230 d~~~~~~~~~--~~~~~---------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
|+.+ +.... .+... .+...+.+++|+|+|++|++|+.||.|++|+++++
T Consensus 282 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 282 NLMT-QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ESSS-CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EeCC-CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9986 33322 22211 23456889999999999999999999999998765
No 62
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-38 Score=261.98 Aligned_cols=240 Identities=16% Similarity=0.245 Sum_probs=207.4
Q ss_pred eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCc
Q psy2305 56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSE 134 (334)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 134 (334)
+|...|.+++| +|++++|++++.|+.|++|++.+++....+..+.. .|.+++|+|++++|++++ |+.
T Consensus 21 gh~~~v~~~~~-------s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 21 GHTKAVSSVKF-------SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSE
T ss_pred ccCCcEEEEEE-------CCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCC-----ceEEEEEcCCCCEEEEECCCCE
Confidence 46678999888 67999999999999999999999998888877655 899999999999999987 999
Q ss_pred EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc
Q psy2305 135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI 214 (334)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 214 (334)
|++||+++ ++... .+.+|...|.+++|+|+++ +|++++.|+.|++||+++++.+..+..|..+|.+++|+|+++
T Consensus 89 i~vwd~~~-~~~~~----~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (312)
T 4ery_A 89 LKIWDVSS-GKCLK----TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162 (312)
T ss_dssp EEEEETTT-CCEEE----EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEECCC-CcEEE----EEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence 99999986 55544 5788999999999999999 999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc
Q psy2305 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL 294 (334)
Q Consensus 215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 294 (334)
+|++++ .|+.|++||+++ ++.+..+... ....+..++|+|++++|++++.|+.|++||+.++ +.+
T Consensus 163 ~l~~~~-~d~~i~~wd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------~~~ 227 (312)
T 4ery_A 163 LIVSSS-YDGLCRIWDTAS-GQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------------KCL 227 (312)
T ss_dssp EEEEEE-TTSCEEEEETTT-CCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------------EEE
T ss_pred EEEEEe-CCCcEEEEECCC-CceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------------cEE
Confidence 999999 899999999997 5555555432 3456778999999999999999999999999987 677
Q ss_pred ceecccccccce--eeeccCCCcccceeeEEeeecceeeee
Q psy2305 295 YKFSAHQDCTNG--VRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 295 ~~~~~~~~~i~~--~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
..+.+|...+.. ..+. .+++ .+|++++.||.|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~----~~l~sg~~dg~i~v 263 (312)
T 4ery_A 228 KTYTGHKNEKYCIFANFS-VTGG----KWIVSGSEDNLVYI 263 (312)
T ss_dssp EEECSSCCSSSCCCEEEE-CSSS----CEEEECCTTSCEEE
T ss_pred EEEEecCCceEEEEEEEE-eCCC----cEEEEECCCCEEEE
Confidence 778777764433 2340 3677 89999999999875
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.6e-38 Score=306.91 Aligned_cols=289 Identities=13% Similarity=0.140 Sum_probs=239.7
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|+|++||+|+.||+|++||+.+++.. ..+. .|...|.+++| +|++++|+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--------------~~~~-~h~~~v~~~~~-------s~~~~~l~ 673 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--------------LDIK-AHEDEVLCCAF-------SSDDSYIA 673 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------------EEEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--------------EEec-cCCCCEEEEEE-------ecCCCEEE
Confidence 57999999999999999999999999999998865 3444 46678988888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
+++.|+.|++||+.+++.+..+..+.. .|.+++|+|+ +.++++++ |+.|++||+.+ +.... .+.+|.
T Consensus 674 s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~----~~~~h~ 743 (1249)
T 3sfz_A 674 TCSADKKVKIWDSATGKLVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRN----TMFGHT 743 (1249)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEEE----EECCCS
T ss_pred EEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchhh----eecCCC
Confidence 999999999999999999999887655 8999999995 45777887 99999999997 55554 577899
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-----------------------------------------
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL----------------------------------------- 197 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------------------- 197 (334)
..|.+++|+|+++ ++++++.||.|++||+++++....+
T Consensus 744 ~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~ 822 (1249)
T 3sfz_A 744 NSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822 (1249)
T ss_dssp SCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEE
T ss_pred CCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEE
Confidence 9999999999999 9999999999999998766433222
Q ss_pred --------------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEE
Q psy2305 198 --------------KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLL 263 (334)
Q Consensus 198 --------------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 263 (334)
.+|...|.+++|+|+++++++++ .|+.|++||+.+ +.....+.+| ...+.+++|+|+|++|+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~-~~~~~~~~~h--~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDS-RLKVADCRGH--LSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTT-TEEEEEECCC--SSCEEEEEECTTSSEEE
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-CceeeecCCC--ccceEEEEECCCCCEEE
Confidence 26778899999999999999999 899999999997 6667777765 66788899999999999
Q ss_pred eeecCCcEEEEeCCCCCCC---------------------------------------------------CCCCcc----
Q psy2305 264 SGNTNGDLSIWNVNTSNLP---------------------------------------------------SSPYEE---- 288 (334)
Q Consensus 264 ~~~~dg~i~iwd~~~~~~~---------------------------------------------------~~~~~~---- 288 (334)
+++.||.|++|++...... ++|+..
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence 9999999999986431000 111111
Q ss_pred ------------ccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 289 ------------SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 289 ------------~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
...+....+.+|...|.+++| +|++ ++|++++.||.+++
T Consensus 979 g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~--s~dg----~~l~s~~~dg~i~v 1029 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF--TADG----KTLISSSEDSVIQV 1029 (1249)
T ss_dssp EETTSCCEEEETTTTSCEEECCCCSSCCCCEEE--CSSS----SCEEEECSSSBEEE
T ss_pred EcCCCCEEEEEcCCCceeeecccCCCceEEEEE--CCCC----CEEEEEcCCCEEEE
Confidence 112445566789999999999 9999 99999999999875
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4e-39 Score=274.30 Aligned_cols=249 Identities=15% Similarity=0.206 Sum_probs=209.3
Q ss_pred eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305 51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130 (334)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (334)
..+. +|.+.|++++| +|++++|++|+.|++|++||+.+++....+..+.. .|.+++|+|++++|+++
T Consensus 60 ~~l~-gH~~~V~~~~~-------sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-----~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 60 RTLQ-GHSGKVYSLDW-------TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-----WVMECAFAPNGQSVACG 126 (380)
T ss_dssp EEEC-CCSSCEEEEEE-------CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT-----TCCCCEECTTSSEEEEC
T ss_pred eccc-ccccEEEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC-----CEEEEEECCCCCEEEEe
Confidence 3444 46688999888 67999999999999999999999999988887655 89999999999999999
Q ss_pred e-CCcEEEEEcCCCCCeeee--ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-----ccCCC
Q psy2305 131 F-LSEVKIFSTDRPGRECVS--RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-----KGHNG 202 (334)
Q Consensus 131 ~-d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~ 202 (334)
+ |+.+++|++......... ....+.+|...+.++.|.|++...|++|+.|++|++||+++++.+..+ .+|..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 8 999999999752111000 000467899999999999986657999999999999999999988777 67899
Q ss_pred CeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305 203 GITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL 281 (334)
Q Consensus 203 ~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 281 (334)
.|.+++|+| ++++|++++ .|+.|++||++.....+..+.+| ...+.+++|+|++++|++++.||+|++||++++
T Consensus 207 ~v~~~~~~~~~~~~l~sgs-~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-- 281 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGS-CDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-- 281 (380)
T ss_dssp CEEEEEECSSSCCEEEEEE-TTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--
T ss_pred CeEEEEeecCCCCEEEEEE-CCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--
Confidence 999999987 889999999 89999999998646677777776 667889999999999999999999999999987
Q ss_pred CCCCCccccccccceeccc-------ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 282 PSSPYEESVQEPLYKFSAH-------QDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.+..+..+ ...|.+++| +|++ ++|++|+.||.|++
T Consensus 282 ----------~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g----~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 282 ----------HQLQVYNREPDRNDNELPIVTSVAF--SISG----RLLFAGYSNGDCYV 324 (380)
T ss_dssp ----------EEEEEECCCCSSSCCSSCSCSEEEE--CSSS----SEEEEECTTSCEEE
T ss_pred ----------cEEEEecccccccccccCceEEEEE--CCCC----CEEEEEECCCCEEE
Confidence 444444332 234899999 9999 99999999999875
No 65
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.4e-38 Score=262.81 Aligned_cols=254 Identities=18% Similarity=0.221 Sum_probs=203.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|++++||+++.||.|++|++.++.... .....+. .|...|.+++|+| ..++++|+
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----------~~~~~~~-~~~~~v~~~~~~~-----~~d~~~l~ 75 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW----------ELSDSWR-AHDSSIVAIDWAS-----PEYGRIIA 75 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE----------EEEEEEE-CCSSCEEEEEECC-----GGGCSEEE
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc----------eecceec-cCCCcEEEEEEcC-----CCCCCEEE
Confidence 579999999999999999999999999998764320 0112233 4668899998843 12689999
Q ss_pred EeeCCCcEEEEeCCCC---------eeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305 82 CSSMYAPIHLWDSVGG---------EIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVS 149 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~ 149 (334)
+++.|+.|++||+.++ +....+..+.. .|.+++|+|+ +++|++++ |+.|++||+++ ++....
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~ 149 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHLGLKLACLGNDGILRLYDALE-PSDLRS 149 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTCEEEEEECSS-TTCTTC
T ss_pred EEcCCCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCCCcEEEEecCCCcEEEecCCC-hHHhcc
Confidence 9999999999999876 45666665444 8999999999 99999887 99999999986 332211
Q ss_pred e---------cccccccccceEEEEEcCC---CCcEEEEeecCCeEEEEECCCCCc--eEeeccCCCCeEEEEEccCC--
Q psy2305 150 R---------NLKPWFRKNIVSAIAINPV---HPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNG-- 213 (334)
Q Consensus 150 ~---------~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-- 213 (334)
. ......|...+.+++|+|+ +. ++++++.++.+.+|+...++. +..+.+|...|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 0 0012367889999999997 77 999999999998888877765 67788899999999999998
Q ss_pred --cEEEeeecCCCeEEEEEccCCC---------------------------------------------ccceeeccccc
Q psy2305 214 --ILLFSGARKDCEIICWDLRNPG---------------------------------------------CILHTFPRQVS 246 (334)
Q Consensus 214 --~~l~~~~~~d~~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~ 246 (334)
++|++++ .|+.|++||++... ..+..+..|
T Consensus 229 ~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-- 305 (351)
T 3f3f_A 229 WYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH-- 305 (351)
T ss_dssp SSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--
T ss_pred cceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--
Confidence 8999999 89999999998621 233344444
Q ss_pred CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL 281 (334)
Q Consensus 247 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 281 (334)
...+.+++|+|++++|++++.||.|++|++.+++.
T Consensus 306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 56799999999999999999999999999998743
No 66
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.1e-38 Score=271.44 Aligned_cols=274 Identities=16% Similarity=0.211 Sum_probs=226.5
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.+++| ++++|++|+.||.|++||+.+++.. ..+. .|...|.+++| ++++|++
T Consensus 135 ~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--------------~~~~-~h~~~v~~l~~---------~~~~l~s 188 (435)
T 1p22_A 135 GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--------------RILT-GHTGSVLCLQY---------DERVIIT 188 (435)
T ss_dssp CEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--------------EEEC-CCSSCEEEEEC---------CSSEEEE
T ss_pred cEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--------------EEEc-CCCCcEEEEEE---------CCCEEEE
Confidence 4666665 8899999999999999999988765 3444 35678888776 7889999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV 161 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 161 (334)
|+.||.|++||+.+++.+..+..+.. .|.+++|++ ..+++++ |+.|++||+.. +....... ...+|...|
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~-~~~~~~~~-~~~~~~~~v 259 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTLIHHCE-----AVLHLRFNN--GMMVTCSKDRSIAVWDMAS-PTDITLRR-VLVGHRAAV 259 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEECCCCS-----CEEEEECCT--TEEEEEETTSCEEEEECSS-SSCCEEEE-EECCCSSCE
T ss_pred EcCCCeEEEEECCCCcEEEEEcCCCC-----cEEEEEEcC--CEEEEeeCCCcEEEEeCCC-CCCceeee-EecCCCCcE
Confidence 99999999999999999988887554 899999974 4788887 99999999987 33321100 467899999
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~ 241 (334)
.+++| +++ ++++|+.||.|++||+++++.+..+.+|...|.++.|+ +++|++++ .|+.|++||+++ +..+..+
T Consensus 260 ~~~~~--~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~-~~~~~~~ 332 (435)
T 1p22_A 260 NVVDF--DDK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIEC-GACLRVL 332 (435)
T ss_dssp EEEEE--ETT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTT-CCEEEEE
T ss_pred EEEEe--CCC-EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCC-CCEEEEE
Confidence 99999 566 99999999999999999999999999999999999994 67999999 899999999998 7777888
Q ss_pred cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceee
Q psy2305 242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVA 321 (334)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~ 321 (334)
..| ...+.+++| ++.+|++|+.||.|++||+.++.....+ .....+..+.+|.+.|.+++| ++ .+
T Consensus 333 ~~h--~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~----~~----~~ 397 (435)
T 1p22_A 333 EGH--EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEHSGRVFRLQF----DE----FQ 397 (435)
T ss_dssp CCC--SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSC---TTTTEEEEECCCSSCCCCEEE----CS----SC
T ss_pred eCC--cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccc---ccchheeeccCCCCCeEEEEe----CC----CE
Confidence 776 567888877 7899999999999999999776321100 001256778899999999999 67 78
Q ss_pred EEeeecceeeee
Q psy2305 322 DATCSGQITNVK 333 (334)
Q Consensus 322 l~t~~~d~~i~~ 333 (334)
|++++.||.|++
T Consensus 398 l~s~s~Dg~i~i 409 (435)
T 1p22_A 398 IVSSSHDDTILI 409 (435)
T ss_dssp EEECCSSSEEEE
T ss_pred EEEEeCCCEEEE
Confidence 999999999875
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.9e-39 Score=266.02 Aligned_cols=248 Identities=15% Similarity=0.145 Sum_probs=197.1
Q ss_pred eeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcC--CCCEEE
Q psy2305 53 LKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSL--DGNKIY 128 (334)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 128 (334)
+...|...|++++| +|++++|++|+.|++|++||+.+++ .+..+..|.. .|++++|+| ++++|+
T Consensus 8 ~~~~H~~~V~~v~~-------s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 8 VDTSHEDMIHDAQM-------DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ------CCEEEEEE-------CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEE
T ss_pred ecccccCeEEEeeE-------cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEE
Confidence 33457789999888 6699999999999999999998775 3556666554 899999986 488999
Q ss_pred Eee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCCc---eEeeccCCC
Q psy2305 129 AGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGRP---LFFLKGHNG 202 (334)
Q Consensus 129 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~ 202 (334)
+++ |++|++||+++....... .+.+|...|.+++|+|+ +. +|++|+.|+.|++||++.+.. ...+.+|..
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~---~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~ 151 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSH---EHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEE---EECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred EEECCCEEEEEECCCCcceEEE---EccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence 888 999999999862212222 46789999999999998 66 899999999999999987632 345678999
Q ss_pred CeEEEEEccC-----------------CcEEEeeecCCCeEEEEEccCCC--ccceeecccccCCceEEEEecCCC----
Q psy2305 203 GITHLEFSSN-----------------GILLFSGARKDCEIICWDLRNPG--CILHTFPRQVSTNQRVYFDLTSCS---- 259 (334)
Q Consensus 203 ~i~~~~~~~~-----------------~~~l~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~---- 259 (334)
.+.+++|+|+ +++|++++ .|+.|++||++..+ .+...+.+| ...+.+++|+|++
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSC
T ss_pred CcceEEEccccCCccccccccccCccccceEEEec-CCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCC
Confidence 9999999997 47899999 89999999997522 244556655 6789999999987
Q ss_pred ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 260 NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 260 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
++|++++.|++|++|++.+.... ......+..|.+.|.+++| +|++ ++||+++.|+++++
T Consensus 229 ~~las~s~D~~v~iw~~~~~~~~--------~~~~~~~~~~~~~v~~v~~--sp~g----~~las~~~D~~v~l 288 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDDASSN--------TWSPKLLHKFNDVVWHVSW--SITA----NILAVSGGDNKVTL 288 (316)
T ss_dssp CEEEEEETTCEEEEEECSSTTCC--------CCBCCEEEECSSCEEEEEE--CTTT----CCEEEEESSSCEEE
T ss_pred ceEEEEcCCCeEEEEEccCcccc--------chhhhhhhcCCCcEEEEEE--cCCC----CEEEEEcCCCeEEE
Confidence 88999999999999999873110 0122345668889999999 9999 99999999999875
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-37 Score=266.22 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=204.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|++++|++|+.||.|++||+.+++.. ..+. .|...|.+++| ++++|+
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--------------~~~~-~~~~~v~~~~~---------~~~~l~ 190 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--------------RTMA-GHQARVGCLSW---------NRHVLS 190 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------------EEEC-CCSSCEEEEEE---------ETTEEE
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--------------EEec-CCCCceEEEEE---------CCCEEE
Confidence 46999999999999999999999999999988765 3444 46678999888 457999
Q ss_pred EeeCCCcEEEEeCC-CCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 82 CSSMYAPIHLWDSV-GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 82 ~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++.||.|++||+. .+.....+..+.. .|.+++|+|++++|++++ |+.|++||+++ +.... .+..|..
T Consensus 191 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~----~~~~~~~ 260 (401)
T 4aez_A 191 SGSRSGAIHHHDVRIANHQIGTLQGHSS-----EVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKF----TKTNHNA 260 (401)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTC-SSEEE----EECCCSS
T ss_pred EEcCCCCEEEEecccCcceeeEEcCCCC-----CeeEEEEcCCCCEEEEEeCCCeEEEccCCC-CCccE----EecCCcc
Confidence 99999999999998 4556677766554 899999999999999988 99999999996 55544 4678999
Q ss_pred ceEEEEEcCCCCcEEEEee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEe--eecCCCeEEEEEccCCC
Q psy2305 160 IVSAIAINPVHPDICALGT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS--GARKDCEIICWDLRNPG 235 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~d~~i~iwd~~~~~ 235 (334)
.|.+++|+|++..++++++ .|+.|++||+++++.+..+. +...|.+++|+|++++|++ |+ .|+.|++||+.. +
T Consensus 261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~-~dg~i~v~~~~~-~ 337 (401)
T 4aez_A 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGF-PDNNLSIWSYSS-S 337 (401)
T ss_dssp CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECT-TTCEEEEEEEET-T
T ss_pred eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeec-CCCcEEEEecCC-c
Confidence 9999999998875777765 79999999999999988886 6678999999999999998 65 699999999987 4
Q ss_pred ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
..........+...+.+++|+|++++|++++.||.|++|++.+++
T Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred cceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 444433322336778899999999999999999999999999884
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.4e-37 Score=259.69 Aligned_cols=275 Identities=11% Similarity=0.092 Sum_probs=218.2
Q ss_pred CceeEEEEcCC---CcEEEEeeCCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 2 DIEEDVDEAPD---GTCLLTNSNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 2 d~V~~~~~sp~---~~~l~~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
+.|++++|+|+ |++|++|+.||.|++|++.+ +... ......|...|.+++| +|++
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--------------~~~~~~h~~~v~~~~~-------~~~~ 98 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--------------PKAQQMHTGPVLDVCW-------SDDG 98 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--------------EEEEEECSSCEEEEEE-------CTTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--------------EEEeccccCCEEEEEE-------CcCC
Confidence 57999999999 69999999999999999987 3332 1233346788999888 6699
Q ss_pred cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE--cCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305 78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF--SLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP 154 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 154 (334)
++|++++.||.|++||+.+++...... +.. .|.+++| +|++++|++++ |+.|++||+++ ++... .+
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~----~~ 167 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIAQ-HDA-----PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS-SNPMM----VL 167 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE-CSS-----CEEEEEEEECSSCEEEEEEETTSEEEEECSSC-SSCSE----EE
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeecc-ccC-----ceEEEEEEeCCCCCEEEEccCCCcEEEEECCC-CcEEE----EE
Confidence 999999999999999999988776433 333 8999999 89999999887 99999999987 44444 23
Q ss_pred cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCCcE----EEeeecCCCeEEE
Q psy2305 155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNGIL----LFSGARKDCEIIC 228 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~----l~~~~~~d~~i~i 228 (334)
..+ ..+.++.+.++ .+++++.++.+++|+++........ ..+...+.++.+.++... +++++ .|+.|++
T Consensus 168 ~~~-~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i 242 (368)
T 3mmy_A 168 QLP-ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAI 242 (368)
T ss_dssp ECS-SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEE
T ss_pred ecC-CCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEE
Confidence 333 45666666654 7888899999999999876443322 223455667777665554 99999 8999999
Q ss_pred EEccCCC--ccceeecccccC----------CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce
Q psy2305 229 WDLRNPG--CILHTFPRQVST----------NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK 296 (334)
Q Consensus 229 wd~~~~~--~~~~~~~~~~~~----------~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 296 (334)
||++... .....+..+... ..+.+++|+|++++|++++.||.|++||+.++ +.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~------------~~~~~ 310 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR------------TKLKT 310 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT------------EEEEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC------------cEEEE
Confidence 9998732 345555554321 15889999999999999999999999999987 77888
Q ss_pred ecccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305 297 FSAHQDCTNGVRWKHHKFERDLLVADATCSGQITN 331 (334)
Q Consensus 297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i 331 (334)
+.+|...|.+++| +|++ ++|++++.|+..
T Consensus 311 ~~~~~~~v~~~~~--s~~g----~~l~~~s~d~~~ 339 (368)
T 3mmy_A 311 SEQLDQPISACCF--NHNG----NIFAYASSYDWS 339 (368)
T ss_dssp CCCCSSCEEEEEE--CTTS----SCEEEEECCCST
T ss_pred ecCCCCCceEEEE--CCCC----CeEEEEeccccc
Confidence 8999999999999 9999 999999998743
No 70
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.5e-37 Score=269.32 Aligned_cols=271 Identities=15% Similarity=0.205 Sum_probs=223.6
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
+.++.+ ++++|++|+.||+|++||+.+++.. ..+. .|...|.+++| +|++ +|+++
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~--------------~~~~-~h~~~V~~l~~-------~~~~-~l~s~ 179 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFL--------------LQLS-GHDGGVWALKY-------AHGG-ILVSG 179 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEE-------CSTT-EEEEE
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE--------------EEEe-CCCcCEEEEEE-------cCCC-EEEEE
Confidence 455555 5679999999999999999988765 3444 46788999888 5566 89999
Q ss_pred eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc--CCCCEEEEee-CCcEEEEEcCCCCCeeee-----------
Q psy2305 84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS--LDGNKIYAGF-LSEVKIFSTDRPGRECVS----------- 149 (334)
Q Consensus 84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~----------- 149 (334)
+.||+|++||+.+++.+..+..+.. .|.+++|+ +++++|++++ |+.|++||+.........
T Consensus 180 s~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 180 STDRTVRVWDIKKGCCTHVFEGHNS-----TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred eCCCCEEEEECCCCcEEEEECCCCC-----ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 9999999999999999998887655 89999998 5778899888 999999999863221100
Q ss_pred -------ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC
Q psy2305 150 -------RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK 222 (334)
Q Consensus 150 -------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 222 (334)
......+|...+.++ +++++ ++++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++ .
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~ 330 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-M 330 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-T
T ss_pred ccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-C
Confidence 000356788888877 56677 999999999999999999999999999999999999999999999999 8
Q ss_pred CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305 223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302 (334)
Q Consensus 223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (334)
|+.|++||+++ ++.+..+..| ...+.++.|+ +++|++++.||.|++||+.++ ...... .+..
T Consensus 331 dg~i~vwd~~~-~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~------------~~~~~~-~~~~ 392 (464)
T 3v7d_B 331 DTTIRIWDLEN-GELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDY------------SRKFSY-HHTN 392 (464)
T ss_dssp TSCEEEEETTT-TEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTC------------CEEEEE-ECTT
T ss_pred CCcEEEEECCC-CcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC------------ceeeee-cCCC
Confidence 99999999998 7778888776 5678888886 589999999999999999986 333333 2556
Q ss_pred ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 303 CTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 303 ~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+..++| +|++ ++|++++ ||.+++
T Consensus 393 ~~~~~~~--~~~~----~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 393 LSAITTF--YVSD----NILVSGS-ENQFNI 416 (464)
T ss_dssp CCCEEEE--EECS----SEEEEEE-TTEEEE
T ss_pred CccEEEE--EeCC----CEEEEec-CCeEEE
Confidence 7888899 9999 9999988 888765
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-38 Score=266.40 Aligned_cols=249 Identities=16% Similarity=0.184 Sum_probs=202.7
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|.+++|+|++++||+++.||.|+||++...... ....+. .|...|.+++|+| ..++++|+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~------------~~~~~~-~h~~~v~~~~~~~-----~~~~~~l~ 73 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------LIDTLT-GHEGPVWRVDWAH-----PKFGTILA 73 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE------------EEEEEC-CCSSCEEEEEECC-----GGGCSEEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce------------eeeEec-CCCCcEEEEEeCC-----CCCCCEEE
Confidence 57999999999999999999999999999844322 112333 3668899999843 22389999
Q ss_pred EeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 82 CSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+++.||.|++||+.+++ ....+..+.. .|.+++|+|+ +.+|++++ |+.|++||+......... .+..
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~ 145 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDA 145 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE---EEEC
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCc-----ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE---EecC
Confidence 99999999999999887 5555555443 8999999999 89999887 999999999873222222 4678
Q ss_pred cccceEEEEEcC-------------CCCcEEEEeecCCeEEEEECCCCC----ceEeeccCCCCeEEEEEccC---CcEE
Q psy2305 157 RKNIVSAIAINP-------------VHPDICALGTYSKIIGLFSDSDGR----PLFFLKGHNGGITHLEFSSN---GILL 216 (334)
Q Consensus 157 ~~~~v~~~~~~~-------------~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~---~~~l 216 (334)
|...|.+++|+| ++. ++++++.||.|++||+++++ ....+.+|...|.+++|+|+ +++|
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 899999999999 577 99999999999999998765 34567889999999999999 8999
Q ss_pred EeeecCCCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 217 FSGARKDCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 217 ~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
++++ .|+.|++||++..... ...+....+...+.+++|+|++++|++++.||.|++|++..
T Consensus 225 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 225 ASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999 8999999999873221 12222223466789999999999999999999999999873
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-37 Score=269.25 Aligned_cols=271 Identities=15% Similarity=0.179 Sum_probs=221.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|.+++|+|++ +|++|+.||+|++||+.+++.. ..+. .|...|.+++|.+ .+++++|+
T Consensus 163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~l~~~~-----~~~~~~l~ 221 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--------------HVFE-GHNSTVRCLDIVE-----YKNIKYIV 221 (464)
T ss_dssp SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEEEE-----SSSCEEEE
T ss_pred cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--------------EEEC-CCCCccEEEEEec-----CCCCCEEE
Confidence 579999999988 8999999999999999988765 3443 4668899999865 56889999
Q ss_pred EeeCCCcEEEEeCCCCeee-----------------------EEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEE
Q psy2305 82 CSSMYAPIHLWDSVGGEIK-----------------------ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKI 137 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i 137 (334)
+++.|+.|++||+.++... ..+..+.. .+.++ +++++++++++ |+.|++
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~--~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-----SVRTV--SGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS-----CEEEE--EEETTEEEEEETTSCEEE
T ss_pred EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc-----eEEEE--cCCCCEEEEEeCCCeEEE
Confidence 9999999999999876533 22333222 55554 67889999987 999999
Q ss_pred EEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEE
Q psy2305 138 FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF 217 (334)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 217 (334)
||+.+ ++... .+.+|...|.+++|+|+++ ++++|+.||.|++||+++++++..+.+|...|.+++|+ +++|+
T Consensus 295 wd~~~-~~~~~----~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~ 366 (464)
T 3v7d_B 295 WDVAQ-MKCLY----ILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLV 366 (464)
T ss_dssp EETTT-TEEEE----EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEE
T ss_pred EECCC-CcEEE----EecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEE
Confidence 99986 55554 5778999999999999999 99999999999999999999999999999999999997 57999
Q ss_pred eeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce-
Q psy2305 218 SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK- 296 (334)
Q Consensus 218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~- 296 (334)
+++ .|+.|++||+++ ........ ....+..++|+|+++++++++ ||.|++||+.++ +.+..
T Consensus 367 s~s-~dg~v~vwd~~~-~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g------------~~~~~~ 428 (464)
T 3v7d_B 367 SAA-ADGSIRGWDAND-YSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG------------KLVHAN 428 (464)
T ss_dssp EEE-TTSEEEEEETTT-CCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC------------CEEESC
T ss_pred EEe-CCCcEEEEECCC-Cceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC------------cEEehh
Confidence 999 899999999987 44333332 234455577899999999998 899999999998 55554
Q ss_pred ecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 297 FSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+..|...|.+++| + .. .++++++.||.+.+
T Consensus 429 ~~~~~~~v~~v~~--~-~~----~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 429 ILKDADQIWSVNF--K-GK----TLVAAVEKDGQSFL 458 (464)
T ss_dssp TTTTCSEEEEEEE--E-TT----EEEEEEEETTEEEE
T ss_pred hccCCCcEEEEEe--c-CC----EEEEEEEeCCeEEE
Confidence 6678889999999 7 34 56777778887654
No 73
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-37 Score=267.36 Aligned_cols=275 Identities=12% Similarity=0.129 Sum_probs=217.3
Q ss_pred eEEEEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcEEEE
Q psy2305 5 EDVDEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSYFLC 82 (334)
Q Consensus 5 ~~~~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~~ 82 (334)
..++++|+...+ ++++.||.|+||++...... ......+. .|...|.+++| +| ++++|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----------~~~~~~~~-~h~~~V~~~~~-------~p~~~~~l~s 99 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRV----------DKNVPLVC-GHTAPVLDIAW-------CPHNDNVIAS 99 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC----------CTTCCCBC-CCSSCEEEEEE-------CTTCTTEEEE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCC----------CCCCceEe-cCCCCEEEEEe-------CCCCCCEEEE
Confidence 457888887544 45789999999999654321 00112233 46788999888 66 8899999
Q ss_pred eeCCCcEEEEeCCCC-------eeeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeeccc
Q psy2305 83 SSMYAPIHLWDSVGG-------EIKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNLK 153 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~ 153 (334)
++.||.|++||+.++ +.+..+..|.. .|.+++|+|++ ++|++++ |+.|++||+++ ++... .
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~----~ 169 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK-----RVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVL----T 169 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSS-----CEEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEE----E
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCC-----eEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccE----E
Confidence 999999999999887 45667776554 89999999998 6888887 99999999996 55444 3
Q ss_pred c--cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCC-eEEEEEccCCcEEEee---ecCCCeE
Q psy2305 154 P--WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGG-ITHLEFSSNGILLFSG---ARKDCEI 226 (334)
Q Consensus 154 ~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~~d~~i 226 (334)
+ ..|...|.+++|+|+++ +|++++.|+.|++||+++++.+..+ .+|.+. +.++.|+|++++|+++ + .|+.|
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-~d~~i 247 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM-SERQV 247 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT-CCEEE
T ss_pred EecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC-CCceE
Confidence 4 67999999999999999 9999999999999999999998888 678776 8999999999999998 7 79999
Q ss_pred EEEEccCCCccceeecccccCCceEEEEecCCCceEEe-eecCCcEEEEeCCCCCCCCCCCccccccccceecc--cccc
Q psy2305 227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLS-GNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA--HQDC 303 (334)
Q Consensus 227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 303 (334)
++||++....++..... .....+.+++|+|++++|++ ++.||.|++||+.+++ ..+..+.. |...
T Consensus 248 ~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~-----------~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 248 ALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA-----------PFLHYLSMFSSKES 315 (402)
T ss_dssp EEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST-----------TCEEEEEEECCSSC
T ss_pred EEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC-----------cceEeecccccCCc
Confidence 99999974443433332 23556888999999999975 5579999999999873 11344443 4588
Q ss_pred cceeeeccCCCcccceeeEEeeec
Q psy2305 304 TNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 304 i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
|.+++| +|++ .++++++.
T Consensus 316 v~~~~~--sp~~----~~~~s~~~ 333 (402)
T 2aq5_A 316 QRGMGY--MPKR----GLEVNKCE 333 (402)
T ss_dssp CSEEEE--CCGG----GSCGGGTE
T ss_pred ccceEE--eccc----ccceecce
Confidence 999999 9999 88776443
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.3e-38 Score=265.31 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=202.7
Q ss_pred CceeEEEEcCC----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-C
Q psy2305 2 DIEEDVDEAPD----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-F 76 (334)
Q Consensus 2 d~V~~~~~sp~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~ 76 (334)
+.|.+++|+|+ |++|++|+.||.|++||+.+++.. ..+. .|...|.+++| +| +
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--------------~~~~-~~~~~i~~~~~-------~~~~ 127 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--------------KHYV-GHGNAINELKF-------HPRD 127 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE--------------EEEE-SCCSCEEEEEE-------CSSC
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe--------------eeec-CCCCcEEEEEE-------CCCC
Confidence 45899999998 779999999999999999988765 3444 36688999888 66 8
Q ss_pred CcEEEEeeCCCcEEEEeCCCCeeeEEE---cCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec-
Q psy2305 77 TSYFLCSSMYAPIHLWDSVGGEIKATY---RPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN- 151 (334)
Q Consensus 77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~- 151 (334)
+++|++++.||.|++||+.+++....+ ..+.. .|.+++|+|++++|++++ |+.|++||++. ++......
T Consensus 128 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 201 (366)
T 3k26_A 128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-----EVLSADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKE 201 (366)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHH
T ss_pred CCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-----ceeEEEECCCCCEEEEecCCCCEEEEECCC-Cccccccce
Confidence 899999999999999999999988887 33333 899999999999999987 99999999985 32221000
Q ss_pred -----------------------ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--------------e
Q psy2305 152 -----------------------LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--------------L 194 (334)
Q Consensus 152 -----------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~ 194 (334)
.....|...|.+++|+ ++ ++++++.|+.|++||+++++. +
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 0122388999999999 55 999999999999999987654 6
Q ss_pred EeeccCCCCeEEEEEccC--CcEEEeeecCCCeEEEEEccCCCccc----eeecccccCCceEEEEecCCCceEEeeecC
Q psy2305 195 FFLKGHNGGITHLEFSSN--GILLFSGARKDCEIICWDLRNPGCIL----HTFPRQVSTNQRVYFDLTSCSNYLLSGNTN 268 (334)
Q Consensus 195 ~~~~~~~~~i~~~~~~~~--~~~l~~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 268 (334)
..+..|...|.+++|+|+ +++|++++ .||.|++||++. +++. ..+..+.+...+.+++|+|++++|++++.|
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCS-SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCC-CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 777889999999999999 99999999 899999999997 4433 356665556789999999999999999999
Q ss_pred CcEEEEeCCC
Q psy2305 269 GDLSIWNVNT 278 (334)
Q Consensus 269 g~i~iwd~~~ 278 (334)
|.|++||+.+
T Consensus 357 g~i~iwd~~~ 366 (366)
T 3k26_A 357 ASIWRWDRLR 366 (366)
T ss_dssp SEEEEEEC--
T ss_pred CEEEEEEecC
Confidence 9999999853
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.6e-37 Score=278.24 Aligned_cols=279 Identities=15% Similarity=0.173 Sum_probs=220.5
Q ss_pred ceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee---eeceeEEEEEEecccceecCCCc
Q psy2305 3 IEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI---KEGGIIYDYVWYPKTSSIDGFTS 78 (334)
Q Consensus 3 ~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~s~~~~ 78 (334)
.|.+++|+|+ +++|++++.|+.|++||+.+++.. ..+.. .|...|.+++| + +++
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------------~~~~~~~~~~~~~v~~~~~-------~-~~~ 265 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL--------------KYIEDDQEPVQGGIFALSW-------L-DSQ 265 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE--------------EECCBTTBCCCSCEEEEEE-------S-SSS
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe--------------EEecccccccCCceEEEEE-------c-CCC
Confidence 7999999999 999999999999999999988865 34422 56688988887 7 899
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF- 156 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~- 156 (334)
+|++++.|+.|++||+.+++.+..+..+... ....+.++.|+ ++.++++++ ++.|++||+.. ++... .+.+
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~-~~~~~----~~~~~ 338 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQ-LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH-DEVLK----TISGH 338 (615)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCTTC-GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE-EEEEE----EECCC
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCc-ccCceeEEEeC-CCCeEEEEECCCCEEEEECCC-CcEEE----EEeCC
Confidence 9999999999999999999998888765211 11267888886 888888887 99999999875 33222 1222
Q ss_pred --------------------------------cccceEEEEEcCC-----------------------------------
Q psy2305 157 --------------------------------RKNIVSAIAINPV----------------------------------- 169 (334)
Q Consensus 157 --------------------------------~~~~v~~~~~~~~----------------------------------- 169 (334)
|...|.+++|.+.
T Consensus 339 ~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~ 418 (615)
T 1pgu_A 339 NKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG 418 (615)
T ss_dssp SSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSS
T ss_pred CCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCC
Confidence 2233333333111
Q ss_pred -------------------------------------CCcEEEEeec-CCeEEEEECCCCCce-EeeccCCCCeEEEEEc
Q psy2305 170 -------------------------------------HPDICALGTY-SKIIGLFSDSDGRPL-FFLKGHNGGITHLEFS 210 (334)
Q Consensus 170 -------------------------------------~~~~l~~~~~-dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~ 210 (334)
++ ++++++. |+.|++||+.+++.. ..+.+|...|.+++|+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (615)
T 1pgu_A 419 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 497 (615)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC
T ss_pred CEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCC-EEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC
Confidence 33 4555555 666666666655443 5667799999999999
Q ss_pred cCCcEEEeeecCCCeEEEEEccCCCccceeecc-cccCCceEEEEecC----------CCceEEeeecCCcEEEEeCCCC
Q psy2305 211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPR-QVSTNQRVYFDLTS----------CSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
|++++|++++ .|+.|++||+.+ ++.+..+.. | ...+.+++|+| ++++|++++.||.|++||+.++
T Consensus 498 ~~g~~l~~~~-~dg~i~iw~~~~-~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 498 PSETYIAAGD-VMGKILLYDLQS-REVKTSRWAFR--TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp TTSSEEEEEE-TTSCEEEEETTT-TEEEECCSCCC--SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCCCEEEEcC-CCCeEEEeeCCC-CcceeEeecCC--CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999999 899999999987 666666655 4 67899999999 9999999999999999999986
Q ss_pred CCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 280 NLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
. +.+..+.+|...|++++| +|++ + |++++.||.|++
T Consensus 574 ~-----------~~~~~~~~h~~~v~~l~~--s~~~----~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 574 M-----------KIIKALNAHKDGVNNLLW--ETPS----T-LVSSGADACIKR 609 (615)
T ss_dssp T-----------CCEEETTSSTTCEEEEEE--EETT----E-EEEEETTSCEEE
T ss_pred c-----------eechhhhcCccceEEEEE--cCCC----C-eEEecCCceEEE
Confidence 3 466778899999999999 9999 9 999999999875
No 76
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=268.09 Aligned_cols=294 Identities=11% Similarity=0.022 Sum_probs=221.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCC---ceeeeeCCCCCC--C------Cccee------------------
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSEL---HCKSVWRPSNQR--P------KLNYT------------------ 52 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~---~~~~~~~~~~~~--~------~~~~~------------------ 52 (334)
.++.+++|+|+|++|+++ .++.|++||+.+++ ............ + .-...
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 368899999999966665 57899999999888 443332211100 0 00000
Q ss_pred -------------eeeeeceeEEEEEEecccceecCCCcEE-EEeeCCCcEEEEeCC--CCeeeEEEcCcccccccccee
Q psy2305 53 -------------LKIKEGGIIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHLWDSV--GGEIKATYRPYNQVDEVTHAY 116 (334)
Q Consensus 53 -------------~~~~~~~~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~ 116 (334)
-...+...|.+++| +|++++| ++++.||.|++||+. +++.+..+..+.+.. .|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~v~ 153 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRL-------TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSK---RPN 153 (450)
T ss_dssp ----------------CCCCCEEEEEE-------CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSS---CEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEE-------cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCC---Cce
Confidence 00012335777776 7799996 889999999999998 888887776433322 799
Q ss_pred EEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC---CCcEEEEeecCCeEEEEECCCCC
Q psy2305 117 SLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV---HPDICALGTYSKIIGLFSDSDGR 192 (334)
Q Consensus 117 ~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~ 192 (334)
+++|+|++++|++++ ++.+++|++.. +.........+.+|...|++++|+|+ ++ +|++++.|+.|++||+++++
T Consensus 154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~ 231 (450)
T 2vdu_B 154 AISIAEDDTTVIIADKFGDVYSIDINS-IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCF 231 (450)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTS-CCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTT
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCC-cccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCc
Confidence 999999999999987 89999999986 33221000046789999999999999 88 99999999999999999998
Q ss_pred ceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccc-----------------------ccCC
Q psy2305 193 PLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ-----------------------VSTN 248 (334)
Q Consensus 193 ~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------~~~~ 248 (334)
.+.. +.+|...|.+++|+ ++++|++++ .|+.|++||+++ ++.+..+..+ ....
T Consensus 232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred eeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 8877 56899999999999 999999999 899999999998 6666655422 1234
Q ss_pred ceEEEEecCCCceEEeee-cCCcEEEEeC--CCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305 249 QRVYFDLTSCSNYLLSGN-TNGDLSIWNV--NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC 325 (334)
Q Consensus 249 ~~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~ 325 (334)
.+..+.|+|++++|++++ .++.|++|++ ..+... +.+..+..| +.|.+++| +|++ .+++++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l---------~~~~~~~~~-~~v~~~~~--~~~~----~~v~~~ 372 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDL---------ALKQIITFP-YNVISLSA--HNDE----FQVTLD 372 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCE---------EEEEEEECS-SCEEEEEE--ETTE----EEEEEC
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCce---------eeccEeccC-CceEEEEe--cCCc----EEEEEe
Confidence 578899999999999998 8999999999 443221 455667777 78999999 9966 555555
Q ss_pred ec
Q psy2305 326 SG 327 (334)
Q Consensus 326 ~~ 327 (334)
+.
T Consensus 373 ~~ 374 (450)
T 2vdu_B 373 NK 374 (450)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3e-37 Score=278.70 Aligned_cols=275 Identities=11% Similarity=0.101 Sum_probs=230.9
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCC----CceeeeeCCCCCCCCcceeeeeeecee-EEEEEEecccceecC-
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE----LHCKSVWRPSNQRPKLNYTLKIKEGGI-IYDYVWYPKTSSIDG- 75 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~s~- 75 (334)
+.|.+++|+|+|++||+++ ++.|++|++.++ +.. ..+.. |... |.+++| +|
T Consensus 19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~--------------~~~~~-h~~~~v~~~~~-------sp~ 75 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV--------------VQFTG-HGSSVVTTVKF-------SPI 75 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE--------------EEECT-TTTSCEEEEEE-------CSS
T ss_pred CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc--------------eEEec-CCCceEEEEEE-------CcC
Confidence 4688999999999999998 789999999977 443 34443 5567 988888 78
Q ss_pred -CCcEEEEeeCCCcEEEEeCCCC--------eeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcC
Q psy2305 76 -FTSYFLCSSMYAPIHLWDSVGG--------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTD 141 (334)
Q Consensus 76 -~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~ 141 (334)
++++|++++.||.|++||+.++ +....+..+.. .|.+++|+|++++|++++ + +.|.+||.
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~- 149 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG-----PISDISWDFEGRRLCVVGEGRDNFGVFISWDS- 149 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEECCSSCSEEEEETTT-
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc-----cEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-
Confidence 9999999999999999999755 55566665444 899999999999999886 4 58888883
Q ss_pred CCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCC---CeEEEEEccC-CcEEE
Q psy2305 142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNG---GITHLEFSSN-GILLF 217 (334)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~ 217 (334)
++... .+.+|...|.+++|+|+++.++++++.|+.|++||+++++.+..+.+|.. .|.+++|+|+ +++|+
T Consensus 150 --~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 150 --GNSLG----EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp --CCEEE----ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred --CCcce----eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence 44444 57789999999999999976799999999999999999999999999999 9999999999 99999
Q ss_pred eeecCCCeEEEEEccCCCccceeeccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc
Q psy2305 218 SGARKDCEIICWDLRNPGCILHTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295 (334)
Q Consensus 218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 295 (334)
+++ .|+.|++||+++ ++.+..+... .+...+.+++|+ ++++|++++.|+.|++||+.++ +.+.
T Consensus 224 ~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~------------~~~~ 288 (615)
T 1pgu_A 224 TVG-SDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS------------KCVQ 288 (615)
T ss_dssp EEE-TTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT------------EEEE
T ss_pred EEe-CCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC------------cEEE
Confidence 999 899999999987 6666666210 236788999999 9999999999999999999987 5666
Q ss_pred eeccc----ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 296 KFSAH----QDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 296 ~~~~~----~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+..+ ...+..+.| . ++ .+|++++.||.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~--~-~~----~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 289 KWTLDKQQLGNQQVGVVA--T-GN----GRIISLSLDGTLNF 323 (615)
T ss_dssp EEECCTTCGGGCEEEEEE--E-ET----TEEEEEETTSCEEE
T ss_pred EEcCCCCcccCceeEEEe--C-CC----CeEEEEECCCCEEE
Confidence 66655 356778888 6 77 89999999998865
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-36 Score=262.83 Aligned_cols=264 Identities=16% Similarity=0.228 Sum_probs=215.7
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|.+++|+ +++|++|+.||+|++||+.+++.. ..+. .|...|.++.| +++.++
T Consensus 160 ~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~~~~---------~~~~l~ 213 (445)
T 2ovr_B 160 GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI--------------HTLY-GHTSTVRCMHL---------HEKRVV 213 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEE---------ETTEEE
T ss_pred CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE--------------EEEC-CCCCcEEEEEe---------cCCEEE
Confidence 356667765 446777777777777777666544 2333 35567877777 456799
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.||.|++||+.+++.+..+..+.. .|.+++| +++++++++ |+.|++||+++ +.... .+.+|...
T Consensus 214 s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~----~~~~~~~~ 281 (445)
T 2ovr_B 214 SGSRDATLRVWDIETGQCLHVLMGHVA-----AVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLH----TLQGHTNR 281 (445)
T ss_dssp EEETTSEEEEEESSSCCEEEEEECCSS-----CEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEE----EECCCSSC
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCcc-----cEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeE----EecCCCCc
Confidence 999999999999999988888876554 8899998 678888887 99999999986 44444 56789999
Q ss_pred eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~ 240 (334)
|.++.| ++. ++++++.|+.|++||+++++.+..+.+|...+.++.++ +++|++++ .||.|++||+++ ++.+..
T Consensus 282 v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~-~~~~~~ 354 (445)
T 2ovr_B 282 VYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKT-GQCLQT 354 (445)
T ss_dssp EEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTT-CCEEEE
T ss_pred eEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCC-CcEEEE
Confidence 999999 666 99999999999999999999999999999999888874 66999999 899999999987 677777
Q ss_pred ecccc-cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee-----cccccccceeeeccCCC
Q psy2305 241 FPRQV-STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF-----SAHQDCTNGVRWKHHKF 314 (334)
Q Consensus 241 ~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~s~~ 314 (334)
+..+. +...+.+++|+ +++|++++.||.|++||+.++ +.+..+ ..|.+.|++++| +|+
T Consensus 355 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~------------~~~~~~~~~~~~~~~~~v~~~~~--s~~ 418 (445)
T 2ovr_B 355 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG------------EFIRNLVTLESGGSGGVVWRIRA--SNT 418 (445)
T ss_dssp ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC------------CEEEEEEECTTGGGTCEEEEEEE--CSS
T ss_pred EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC------------ceeeeeeccccCCCCceEEEEEe--cCC
Confidence 76532 46678888885 689999999999999999998 555555 467889999999 999
Q ss_pred cccceeeEEeeeccee
Q psy2305 315 ERDLLVADATCSGQIT 330 (334)
Q Consensus 315 ~~~~~~~l~t~~~d~~ 330 (334)
+ .+||+++.||+
T Consensus 419 ~----~~la~~~~dg~ 430 (445)
T 2ovr_B 419 K----LVCAVGSRNGT 430 (445)
T ss_dssp E----EEEEEECSSSS
T ss_pred E----EEEEEcccCCC
Confidence 9 99999999997
No 79
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-37 Score=286.72 Aligned_cols=203 Identities=10% Similarity=0.105 Sum_probs=169.2
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|++++||+|+.||+|+||+..+.+.. ....+...|.+++| +| +++|+
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~----------------~~~~~~~~V~~l~f-------sp-g~~L~ 73 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV----------------IKLEDRSAIKEMRF-------VK-GIYLV 73 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE----------------EECSSCCCEEEEEE-------ET-TTEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE----------------EEcCCCCCEEEEEE-------cC-CCEEE
Confidence 57999999999999999999999999998766543 22235678988887 67 77999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeee-eec------cc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECV-SRN------LK 153 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~-~~~------~~ 153 (334)
+++.|++|++||+.+++.+..+.. .. .|++++|+|++++|++|+ ||.|++||++. +.... ..+ ..
T Consensus 74 S~s~D~~v~lWd~~~~~~~~~~~~-~~-----~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~-~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 74 VINAKDTVYVLSLYSQKVLTTVFV-PG-----KITSIDTDASLDWMLIGLQNGSMIVYDIDR-DQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp EEETTCEEEEEETTTCSEEEEEEC-SS-----CEEEEECCTTCSEEEEEETTSCEEEEETTT-TEEEEEEECCHHHHHTC
T ss_pred EEECcCeEEEEECCCCcEEEEEcC-CC-----CEEEEEECCCCCEEEEEcCCCcEEEEECCC-Cccccceeccccccccc
Confidence 999999999999999988887752 22 799999999999999998 99999999986 33221 000 13
Q ss_pred ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------------------CCCeEEEEEccCCcE
Q psy2305 154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------------------NGGITHLEFSSNGIL 215 (334)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~ 215 (334)
..+|...|.+++|+|++...+++|+.||.| +||+++++.+..+..| ...|.+++|+|+|++
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 467889999999999753389999999999 9999999888887655 477999999999999
Q ss_pred EEeeecCCCeEEEEEccCCCccc
Q psy2305 216 LFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 216 l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
|++++ .|+.|++||+++ ++++
T Consensus 226 lasgs-~Dg~i~lWd~~~-g~~~ 246 (902)
T 2oaj_A 226 IITIH-EDNSLVFWDANS-GHMI 246 (902)
T ss_dssp EEEEE-TTCCEEEEETTT-CCEE
T ss_pred EEEEE-CCCeEEEEECCC-CcEE
Confidence 99999 899999999987 5544
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=265.77 Aligned_cols=293 Identities=13% Similarity=0.017 Sum_probs=210.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCcee-------eeeC---CCCCC-----CCcceeeeeeeceeEEEEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCK-------SVWR---PSNQR-----PKLNYTLKIKEGGIIYDYVW 66 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~-------~~~~---~~~~~-----~~~~~~~~~~~~~~v~~~~~ 66 (334)
+.|.+++|||||+++|+++.|++|+ |....+... .+.+ ..... ......+...+...|.+++|
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vaw 93 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKP 93 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEE
Confidence 5689999999999999999999998 655444221 0000 00000 01111222223566777777
Q ss_pred ecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCC
Q psy2305 67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGR 145 (334)
Q Consensus 67 ~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 145 (334)
||+|++||+++.||.|++||.+. ++..+. +...-....+.+++|||||++|++|+ ||+|++||+.. +.
T Consensus 94 -------SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~ 162 (588)
T 2j04_A 94 -------SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NS 162 (588)
T ss_dssp -------CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CT
T ss_pred -------CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cc
Confidence 77999999999999999999644 555555 33211112599999999999999998 99999999986 33
Q ss_pred e-------eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc---eEee-ccCCCCeEEEEEccCCc
Q psy2305 146 E-------CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP---LFFL-KGHNGGITHLEFSSNGI 214 (334)
Q Consensus 146 ~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~i~~~~~~~~~~ 214 (334)
. +........+|...|.+++|+|+| +++++.|+.|++||+..++. .+++ .+|...|.+++|+ |+
T Consensus 163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp TTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred cccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence 1 222111236788999999999998 77788899999999987763 3556 4788899999999 68
Q ss_pred EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEe--cCCCceEEeeecCCcEEEEeCCCCCCCCCCCcc----
Q psy2305 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL--TSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEE---- 288 (334)
Q Consensus 215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---- 288 (334)
.|++++ +++|++||+.. +.......+| ...+..++| +|++..|+++++||+ ++|....- .++|+..
T Consensus 238 ~LASa~--~~tIkLWd~~~-~~~~~~~~gh--~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~--~~spd~~l~a~ 309 (588)
T 2j04_A 238 KVVLTC--PGYVHKIDLKN-YSISSLKTGS--LENFHIIPLNHEKESTILLMSNKTSY-KVLLEDEL--HVTADNIIAPY 309 (588)
T ss_dssp EEEEEC--SSEEEEEETTT-TEEEEEECSC--CSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSE--EEECCCSSHHH
T ss_pred EEEEEe--CCeEEEEECCC-CeEEEEEcCC--CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccE--EECCCceEEEE
Confidence 898887 69999999986 4432222244 667788999 999999999999999 99997632 1334332
Q ss_pred -----ccc----cccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305 289 -----SVQ----EPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 289 -----~~~----~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
..| ..+..+.+ ...|.+++| +||| +.+|+++.
T Consensus 310 ~d~~v~lW~~~g~~l~~~~~-~~~I~~va~--SPdG----~~lA~~~~ 350 (588)
T 2j04_A 310 LEKKFKKWSTIWNEFNNYET-TLVIHGISL--SPDG----YSIAIVYD 350 (588)
T ss_dssp HHHHHHHTTTTTTSSSSSCC-EEEEEEEEE--CTTS----SEEEEEEE
T ss_pred cCCEEEEEECCCCceeeecc-ceEEEEEEE--CCCC----CEEEEEEe
Confidence 011 22333333 557999999 9999 99999876
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-38 Score=305.53 Aligned_cols=275 Identities=19% Similarity=0.189 Sum_probs=235.1
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.+++|+|+++++++|+.+|.|++|++.+++.. ..+. .|...|.+++| +|++++|++
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~--------------~~~~-~h~~~v~~l~~-------s~dg~~l~s 1020 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF--------------SSGV-GHKKAVRHIQF-------TADGKTLIS 1020 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE--------------EECC-CCSSCCCCEEE-------CSSSSCEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee--------------eecc-cCCCceEEEEE-------CCCCCEEEE
Confidence 5889999999999999999999999999988765 2333 45677877776 779999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVS 162 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~ 162 (334)
++.||.|++||+.+++... +..+.. .|.+++|+|++.+++.+.|+.|++||+.+ ++... .+.+|...|.
T Consensus 1021 ~~~dg~i~vwd~~~~~~~~-~~~~~~-----~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~----~~~~~~~~v~ 1089 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYVF-LQAHQE-----TVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRIER----DFTCHQGTVL 1089 (1249)
T ss_dssp ECSSSBEEEEETTTTEEEC-CBCCSS-----CEEEEEECSSSEEEEEESSSEEEEEETTT-TCCCE----EEECCSSCCC
T ss_pred EcCCCEEEEEECCCCceEE-EecCCC-----cEEEEEEcCCCcEEEEECCCcEEEEECCC-CceeE----EEcccCCcEE
Confidence 9999999999999987663 223222 89999999987655555599999999987 55544 5778999999
Q ss_pred EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec
Q psy2305 163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242 (334)
Q Consensus 163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~ 242 (334)
+++|+|+++ ++++++.|+.|++||+.+++++..+.+|.+.|.+++|+|+|++|++++ .||.|++||+.+ ++.+..+.
T Consensus 1090 ~~~~s~d~~-~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~-~dg~i~vwd~~~-~~~~~~~~ 1166 (1249)
T 3sfz_A 1090 SCAISSDAT-KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD-DNGEIRIWNVSD-GQLLHSCA 1166 (1249)
T ss_dssp CEEECSSSS-SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEE-TTSCCCEEESSS-SCCCCCCC
T ss_pred EEEECCCCC-EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEe-CCCEEEEEECCC-CceEEEec
Confidence 999999999 999999999999999999999999999999999999999999999999 899999999997 55554431
Q ss_pred -------ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305 243 -------RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE 315 (334)
Q Consensus 243 -------~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~ 315 (334)
...+...+.+++|+|+|++|++++ |.|++||+.++ +.+..+..|...|.+++| +|++
T Consensus 1167 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g------------~~~~~~~~~~~~i~~~~~--s~dg 1230 (1249)
T 3sfz_A 1167 PISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG------------DSSQTFYTNGTNLKKIHV--SPDF 1230 (1249)
T ss_dssp CCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC------------BCCCCCCCSSCCCCCCEE--CSSS
T ss_pred cccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC------------ceeeeeeccCCcccEEEE--CCCC
Confidence 012356788999999999999885 89999999998 667788888999999999 9999
Q ss_pred ccceeeEEeeecceeeee
Q psy2305 316 RDLLVADATCSGQITNVK 333 (334)
Q Consensus 316 ~~~~~~l~t~~~d~~i~~ 333 (334)
++|++++.||.+++
T Consensus 1231 ----~~l~~~~~dg~v~v 1244 (1249)
T 3sfz_A 1231 ----RTYVTVDNLGILYI 1244 (1249)
T ss_dssp ----CCEEEECTTCCEEE
T ss_pred ----CEEEEecCCcEEEE
Confidence 99999999999875
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.2e-37 Score=258.87 Aligned_cols=251 Identities=13% Similarity=0.134 Sum_probs=206.1
Q ss_pred CceeEEEEcCC---CcEEEEeeCCCeEEEEECCCCC-ceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 2 DIEEDVDEAPD---GTCLLTNSNDNHLRTFDLPSEL-HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 2 d~V~~~~~sp~---~~~l~~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
++|.+++|+|+ |++|++++.||.|++||+.+++ .. ..+. .|...|.+++|.+ .++|+|++
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~~~~-~~~~~v~~~~~~~-~~~~s~~~ 129 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV--------------YSVK-GHKEIINAIDGIG-GLGIGEGA 129 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS--------------EEEC-CCSSCEEEEEEES-GGGCC-CC
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE--------------EEEE-ecccceEEEeecc-ccccCCCc
Confidence 47999999998 6999999999999999999877 33 2343 4668899999975 36789999
Q ss_pred cEEEEeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEE----EcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305 78 SYFLCSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLA----FSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN 151 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~ 151 (334)
++|++++.|+.|++||+.+++ ....+..+.... ...+.+++ |+|++++|++++ |+.|++||++. ++. .
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~--- 203 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL-R--- 203 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE-E---
T ss_pred cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce-e---
Confidence 999999999999999999886 667776533211 12688888 788999999988 89999999996 333 2
Q ss_pred ccccccccceEEEEEcC---CCCcEEEEeecCCeEEEEECCCCCceEeec-----cCCCCeEEEEEccCCc-EEEeeecC
Q psy2305 152 LKPWFRKNIVSAIAINP---VHPDICALGTYSKIIGLFSDSDGRPLFFLK-----GHNGGITHLEFSSNGI-LLFSGARK 222 (334)
Q Consensus 152 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~l~~~~~~ 222 (334)
....|...|.+++|+| ++. ++++++.||.|++||+++++....+. +|...|.+++|+|+++ +|++++ .
T Consensus 204 -~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~ 280 (357)
T 3i2n_A 204 -WETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG-G 280 (357)
T ss_dssp -EEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE-T
T ss_pred -eecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe-C
Confidence 3467889999999999 888 99999999999999998876665554 8999999999999998 899999 8
Q ss_pred CCeEEEEEccCCCc------------------cceeecccccCCceEEEEecCCCceEE-eeecCCcEEEEeCCCC
Q psy2305 223 DCEIICWDLRNPGC------------------ILHTFPRQVSTNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTS 279 (334)
Q Consensus 223 d~~i~iwd~~~~~~------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~ 279 (334)
|+.|++||++.... .+..+..| ...+.+++|+|++++|+ +++.||.|++||+.+.
T Consensus 281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCcEEEeecCCCcccccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 99999999986322 23444444 66789999999999998 7999999999999875
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-38 Score=269.97 Aligned_cols=242 Identities=12% Similarity=0.143 Sum_probs=194.2
Q ss_pred eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCC--eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305 57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG--EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS 133 (334)
Q Consensus 57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 133 (334)
+.+.|++++| +|++++|++++.|+.|++||+.++ +....+..|.. .|.+++|+|++++|++++ |+
T Consensus 10 ~~~~v~~~~~-------s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~d~ 77 (377)
T 3dwl_C 10 LPKPSYEHAF-------NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-----IVTCVDWAPKSNRIVTCSQDR 77 (377)
T ss_dssp CSSCCSCCEE-------CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-----CEEEEEECTTTCCEEEEETTS
T ss_pred CCCcEEEEEE-------CCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-----eEEEEEEeCCCCEEEEEeCCC
Confidence 4456766666 779999999999999999999888 56666665544 899999999999999988 99
Q ss_pred cEEEEEcCCCC--CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeecc-CCCCeEEE
Q psy2305 134 EVKIFSTDRPG--RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKG-HNGGITHL 207 (334)
Q Consensus 134 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~i~~~ 207 (334)
.|++||+.... .... .+..|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+ |...|.++
T Consensus 78 ~v~vwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTL----VLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp SEEEC------CCCCEE----ECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred eEEEEEcCCCCceeeee----EecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 99999998632 0222 4678999999999999999 99999999999999998876 4777777 99999999
Q ss_pred EEccCCcEEEeeecCCCeEEEEEccCC-----------------CccceeecccccCCceEEEEecCCCceEEeeecCCc
Q psy2305 208 EFSSNGILLFSGARKDCEIICWDLRNP-----------------GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD 270 (334)
Q Consensus 208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 270 (334)
+|+|++++|++++ .|+.|++||++.. +.++..+ . +...+.+++|+|++++|++++.||.
T Consensus 153 ~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 153 DWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P--SGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C--CSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c--CCceEEEEEECCCCCEEEEEeCCCc
Confidence 9999999999999 8999999999631 2233333 3 4677899999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|++||+.+++.. ...+..+.+|...|.+++| +|++ ++|++++.|+.+..
T Consensus 229 i~iwd~~~~~~~--------~~~~~~~~~~~~~v~~~~~--s~~~----~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 229 VTIAYPSAPEQP--------PRALITVKLSQLPLRSLLW--ANES----AIVAAGYNYSPILL 277 (377)
T ss_dssp EC-CEECSTTSC--------EEECCCEECSSSCEEEEEE--EETT----EEEEEESSSSEEEE
T ss_pred EEEEECCCCCCc--------ceeeEeecCCCCceEEEEE--cCCC----CEEEEEcCCcEEEE
Confidence 999999997321 0127788899999999999 9999 99999998887753
No 84
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.3e-38 Score=264.80 Aligned_cols=249 Identities=15% Similarity=0.131 Sum_probs=187.5
Q ss_pred CceeEEEEcCCCcEEEEe-----------eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc
Q psy2305 2 DIEEDVDEAPDGTCLLTN-----------SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~-----------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (334)
+.|.+++++ ++.+++| +.|+.+++|++............... .....+...+..++
T Consensus 74 ~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~----- 140 (365)
T 4h5i_A 74 DSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF------DASTNADDYTKLVY----- 140 (365)
T ss_dssp CCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECS------SCCCCTTCCEEEEE-----
T ss_pred CceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeece------eecCCcccCEEEEE-----
Confidence 345666554 4455554 45788999998765432100000000 00001122344444
Q ss_pred ceecCCCcEEEEe--eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeee
Q psy2305 71 SSIDGFTSYFLCS--SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148 (334)
Q Consensus 71 ~~~s~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~ 148 (334)
|||||++++++ +.|++|+|||+++++.+..+.. .. .|.+++|+|||++|++++++.+.+|+..+ +....
T Consensus 141 --fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-~~-----~V~~v~fspdg~~l~s~s~~~~~~~~~~~-~~~~~ 211 (365)
T 4h5i_A 141 --ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-RG-----EVKDLHFSTDGKVVAYITGSSLEVISTVT-GSCIA 211 (365)
T ss_dssp --ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-SS-----CCCEEEECTTSSEEEEECSSCEEEEETTT-CCEEE
T ss_pred --EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC-CC-----ceEEEEEccCCceEEeccceeEEEEEecc-Cccee
Confidence 48899997654 4789999999999999888753 22 79999999999999999977888888876 44333
Q ss_pred eecccccccccceEEEEEcCCCCcEEEEeecCC----eEEEEECCCCCc----eEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSK----IIGLFSDSDGRP----LFFLKGHNGGITHLEFSSNGILLFSGA 220 (334)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~ 220 (334)
.. ....|...|.+++|+|+++ .+++++.++ .+++|++..... ...+.+|...|++++|+|+|++|++|+
T Consensus 212 ~~--~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 212 RK--TDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp EE--CCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred ee--ecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 21 4567888999999999999 999998887 688999876543 345678999999999999999999999
Q ss_pred cCCCeEEEEEccCCCccceee-cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 221 RKDCEIICWDLRNPGCILHTF-PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
.|++|+|||+++ ++++..+ .+| ...|.+++|+|||++|++++.|++|+|||+...
T Consensus 289 -~D~~V~iwd~~~-~~~~~~~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 289 -NDNSIALVKLKD-LSMSKIFKQAH--SFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -TTSCEEEEETTT-TEEEEEETTSS--SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -CCCEEEEEECCC-CcEEEEecCcc--cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 899999999998 7777665 455 678999999999999999999999999999754
No 85
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=255.35 Aligned_cols=263 Identities=11% Similarity=0.076 Sum_probs=196.7
Q ss_pred cCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcE
Q psy2305 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPI 89 (334)
Q Consensus 10 sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i 89 (334)
.+++.+|++|+.||+|++||+.+++.. ..+. ...|. .+.++|+ +++++.|++|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~--------------~~~~---~~~v~-------~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTI--------------TTIT---TPNPR-------TGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCE--------------EEEE---EECCC-------TTCCCCS---EEEECSTTEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEE--------------EEEe---cCCce-------eeeeCCc---eEEecCCCeE
Confidence 357889999999999999999988765 2232 23343 3455666 8999999999
Q ss_pred EEEeCC---------CCeeeEEEcCccccccccceeEEEEcC--CCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305 90 HLWDSV---------GGEIKATYRPYNQVDEVTHAYSLAFSL--DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 90 ~iwd~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
++|+.. +++.+..+.. .+. ..|.+++|+| +++++++++ |+.|++||+++ ++.... ....+
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~---~~~~~ 169 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLREIEV-DSA---NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIV---HSAKS 169 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEEC-CCS---SCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEE---ECCCS
T ss_pred EEEEccCceEEeecCCcceeEEeec-CCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEE---EecCC
Confidence 999765 4443433331 121 2799999999 999999888 99999999997 444332 22445
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce-Eeecc-CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-FFLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~ 235 (334)
...+.+++|+|++. +|++|+.||.|++||+++++.+ ..+.. |.++|.+++|+|++.+|++++ .+ .|++||++. .
T Consensus 170 ~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~-~ 245 (343)
T 3lrv_A 170 DVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRK-D 245 (343)
T ss_dssp SCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEEEEETTS-S
T ss_pred CCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCC-C
Confidence 66899999999999 9999999999999999999887 78888 999999999999999999999 55 999999997 4
Q ss_pred ccceeecc---cccCCceEEEEecCCCceEEeeec-CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeecc
Q psy2305 236 CILHTFPR---QVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKH 311 (334)
Q Consensus 236 ~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (334)
.....+.. +.......+++|+|+|++|++++. |+.+++|++.... ..... ..+..++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~------------~~~~~----~~~~~~~~-- 307 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT------------KNWTK----DEESALCL-- 307 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT------------CSEEE----EEEEECCC--
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc------------cceEe----cCceeEec--
Confidence 44444332 211111146899999999999988 9999999997752 11111 45677778
Q ss_pred CC---CcccceeeEEeeecceeeee
Q psy2305 312 HK---FERDLLVADATCSGQITNVK 333 (334)
Q Consensus 312 s~---~~~~~~~~l~t~~~d~~i~~ 333 (334)
.| +. +.|++++.||.+.+
T Consensus 308 ~~~~~~~----~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 308 QSDTADF----TDMDVVCGDGGIAA 328 (343)
T ss_dssp ----CCC----CEEEEEEETTEEEE
T ss_pred Ccccccc----ceeEEEecCCceEE
Confidence 77 66 77888888877653
No 86
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.1e-36 Score=261.16 Aligned_cols=258 Identities=19% Similarity=0.307 Sum_probs=220.2
Q ss_pred EcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCc
Q psy2305 9 EAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAP 88 (334)
Q Consensus 9 ~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~ 88 (334)
++++|++|++|+.||+|++||+.+++.. ..+. .|...|.+++| ++++|++++.||.
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~~~~---------~~~~l~s~~~dg~ 180 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCL--------------RTLV-GHTGGVWSSQM---------RDNIIISGSTDRT 180 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEE--------------EECC-CCSSCEEEEEE---------ETTEEEEEETTSC
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEE--------------EEEc-CCCCCEEEEEe---------cCCEEEEEeCCCe
Confidence 5557899999999999999999988865 3444 46678988888 3568999999999
Q ss_pred EEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN 167 (334)
Q Consensus 89 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (334)
|++||+.+++.+..+..+.. .|.+++|+ ++.+++++ |+.|++||+.+ ++... .+.+|...+.++++
T Consensus 181 i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~~~~~----~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 181 LKVWNAETGECIHTLYGHTS-----TVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLH----VLMGHVAAVRCVQY- 247 (445)
T ss_dssp EEEEETTTTEEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEE----EEECCSSCEEEEEE-
T ss_pred EEEEECCcCcEEEEECCCCC-----cEEEEEec--CCEEEEEeCCCEEEEEECCC-CcEEE----EEcCCcccEEEEEE-
Confidence 99999999999998887655 89999996 56788887 99999999996 55554 56789999999999
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccC
Q psy2305 168 PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247 (334)
Q Consensus 168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 247 (334)
++. ++++++.||.|++||+++++.+..+.+|...|.+++| ++.++++++ .|+.|++||+++ ++.+..+..+ .
T Consensus 248 -~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~-~~~~~~~~~~--~ 319 (445)
T 2ovr_B 248 -DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVET-GNCIHTLTGH--Q 319 (445)
T ss_dssp -CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTT-CCEEEEECCC--C
T ss_pred -CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCC-CCEEEEEcCC--c
Confidence 566 8999999999999999999999999999999999999 788999999 899999999998 7777777765 4
Q ss_pred CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc---cccccceeeeccCCCcccceeeEEe
Q psy2305 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA---HQDCTNGVRWKHHKFERDLLVADAT 324 (334)
Q Consensus 248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~s~~~~~~~~~l~t 324 (334)
..+.++.+ +++++++++.||.|++||+.++ +.+..+.. |...|.+++| + + ++|++
T Consensus 320 ~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~~--~--~----~~l~s 377 (445)
T 2ovr_B 320 SLTSGMEL--KDNILVSGNADSTVKIWDIKTG------------QCLQTLQGPNKHQSAVTCLQF--N--K----NFVIT 377 (445)
T ss_dssp SCEEEEEE--ETTEEEEEETTSCEEEEETTTC------------CEEEEECSTTSCSSCEEEEEE--C--S----SEEEE
T ss_pred ccEEEEEE--eCCEEEEEeCCCeEEEEECCCC------------cEEEEEccCCCCCCCEEEEEE--C--C----CEEEE
Confidence 45666654 5779999999999999999987 56666665 7788999999 4 6 78999
Q ss_pred eecceeeee
Q psy2305 325 CSGQITNVK 333 (334)
Q Consensus 325 ~~~d~~i~~ 333 (334)
++.||.|++
T Consensus 378 ~~~dg~v~i 386 (445)
T 2ovr_B 378 SSDDGTVKL 386 (445)
T ss_dssp EETTSEEEE
T ss_pred EeCCCeEEE
Confidence 999999875
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.7e-36 Score=262.36 Aligned_cols=310 Identities=15% Similarity=0.203 Sum_probs=229.6
Q ss_pred ceeEEEEcCCC----------cEEEEeeC----CCeEEEEECCCCCceee------------eeCCCCCCCCcceeeeee
Q psy2305 3 IEEDVDEAPDG----------TCLLTNSN----DNHLRTFDLPSELHCKS------------VWRPSNQRPKLNYTLKIK 56 (334)
Q Consensus 3 ~V~~~~~sp~~----------~~l~~~~~----d~~v~iw~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 56 (334)
+..++.|.|+. .++++|+. .+.|.++++.-...... +.......+.+.......
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 45788899865 46777764 45788876541100000 000001112233344455
Q ss_pred eceeEEEEEEecccceecCC-CcEEEEeeCCCcEEEEeCCC----------CeeeEEEcCccccccccceeEEEEcCCCC
Q psy2305 57 EGGIIYDYVWYPKTSSIDGF-TSYFLCSSMYAPIHLWDSVG----------GEIKATYRPYNQVDEVTHAYSLAFSLDGN 125 (334)
Q Consensus 57 ~~~~v~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 125 (334)
|.+.|++++| +|+ +++|++++.||.|++|++.+ .+....+..|.. .|++++|+|++.
T Consensus 127 h~~~v~~l~~-------~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~ 194 (430)
T 2xyi_A 127 HEGEVNRARY-------MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-----EGYGLSWNPNLN 194 (430)
T ss_dssp ESSCCSEEEE-------ETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-----CCCCEEECTTST
T ss_pred CCCcEEEEEE-------CCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-----CeEEEEeCCCCC
Confidence 6778888777 555 67899999999999999976 456666766554 899999999998
Q ss_pred -EEEEee-CCcEEEEEcCCCCCe--eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC---CceEeec
Q psy2305 126 -KIYAGF-LSEVKIFSTDRPGRE--CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG---RPLFFLK 198 (334)
Q Consensus 126 -~l~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~ 198 (334)
+|++++ ||.|++|++...... .......+..|...|.+++|+|++..+|++++.||.|++||++++ +.+..+.
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 888887 999999999862221 111011456899999999999954449999999999999999987 5777888
Q ss_pred cCCCCeEEEEEccCCc-EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeC
Q psy2305 199 GHNGGITHLEFSSNGI-LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNV 276 (334)
Q Consensus 199 ~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~ 276 (334)
.|...|++++|+|+++ +|++++ .|+.|++||++....++..+..| ...+.+++|+|+++ +|++++.||.|++||+
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred cCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 8999999999999987 688999 89999999999756667777766 67899999999995 6889999999999999
Q ss_pred CCCCCCCCCC--ccccccccceecccccccceeeeccCCCccccee-eEEeeecceeeee
Q psy2305 277 NTSNLPSSPY--EESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATCSGQITNVK 333 (334)
Q Consensus 277 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~~~d~~i~~ 333 (334)
........+. .+...+.+..+.+|...|.+++| +|++ + +|++++.||.|++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~----~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW--NPNE----PWIICSVSEDNIMQV 405 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE--CSSS----TTEEEEEETTSEEEE
T ss_pred CCCccccCccccccCCcceEEEcCCCCCCceEEEE--CCCC----CCEEEEEECCCCEEE
Confidence 8743211100 00112566777889999999999 9999 8 8999999999875
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.5e-36 Score=258.91 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=203.2
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++|+|+|+|++||+|+.||.|+|||+.+++.. ..+. .|...+.++.| ++.+|+
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--------------~~~~-~h~~~v~~~s~---------~~~~l~ 203 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--------------RNMT-SHSARVGSLSW---------NSYILS 203 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEE---------ETTEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--------------EEEe-CCCCceEEEee---------CCCEEE
Confidence 46999999999999999999999999999998865 3444 35677877766 677999
Q ss_pred EeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++.|+.+++||..... .+..+..+.. .+..+.|+|+++++++++ |+.+++|+......... .......|..
T Consensus 204 sgs~d~~i~~~d~~~~~~~~~~~~~h~~-----~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~~ 277 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQG 277 (420)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCSS
T ss_pred EEeCCCceeEeeecccceeeEEeccccc-----ceeeeeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccCC
Confidence 99999999999987643 4566666554 899999999999999987 99999999986322111 1114567889
Q ss_pred ceEEEEEcCCCCcEEEE--eecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec-CCCeEEEEEccCCCc
Q psy2305 160 IVSAIAINPVHPDICAL--GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KDCEIICWDLRNPGC 236 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~iwd~~~~~~ 236 (334)
.|.+++|+|.+..++++ |+.|++|++||++++++...+..| ..+.++.|+|+++.+++++. .|+.|++||+.+ ++
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~ 355 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MA 355 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CC
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC-Cc
Confidence 99999999988767766 457999999999999998888754 57889999999998877541 589999999998 78
Q ss_pred cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
++..+.+| ...|.+++|+|+|++|++|+.|++|+|||+...
T Consensus 356 ~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 356 KVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 88888887 678999999999999999999999999999876
No 89
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-36 Score=276.84 Aligned_cols=243 Identities=21% Similarity=0.299 Sum_probs=196.9
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|+|++|++|+.|++|+|||+.++... ..+. .|...|.+++| +|++++|+
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~--------------~~~~-~h~~~v~~~~~-------s~~~~~l~ 488 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------------RRFV-GHTKDVLSVAF-------SLDNRQIV 488 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------------EEEE-CCSSCEEEEEE-------CTTSSCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce--------------eEEe-CCCCCEEEEEE-------eCCCCEEE
Confidence 46899999999999999999999999999988765 3444 46678988888 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC--CEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG--NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
+++.|++|++||............ ...+...|.+++|+|++ ..|++++ |+.|++||++. .+... .+.+|.
T Consensus 489 s~s~D~~i~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~----~~~~h~ 561 (694)
T 3dm0_A 489 SASRDRTIKLWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRS----TLAGHT 561 (694)
T ss_dssp EEETTSCEEEECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEE----EECCCS
T ss_pred EEeCCCEEEEEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEE----EEcCCC
Confidence 999999999999865443332221 11122279999999987 5788887 99999999986 44444 578899
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
..|++++|+|+++ +|++|+.||.|++||+++++.+..+. +...|.+++|+|++.+|++++ ++.|++||+++ +..+
T Consensus 562 ~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~-~~~~ 636 (694)
T 3dm0_A 562 GYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLES-KSIV 636 (694)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTT-TEEE
T ss_pred CCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCC-CCCh
Confidence 9999999999999 99999999999999999999888876 456799999999998888776 67799999987 5555
Q ss_pred eeecccc-----------------cCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 239 HTFPRQV-----------------STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 239 ~~~~~~~-----------------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
..+..+. ....+.+++|+|+|++|++|+.||.|++|++..
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred hhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 5443221 112367899999999999999999999999863
No 90
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-37 Score=284.77 Aligned_cols=305 Identities=7% Similarity=0.048 Sum_probs=208.0
Q ss_pred CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCC---cceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPK---LNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
.+|.+++|+|+ +..|++|+.||.| +||+.+++....+......... .......+|...|.+++| +|+|
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f-------spdg 223 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY-------HPNS 223 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE-------CTTS
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE-------cCCC
Confidence 46899999996 5789999999999 9999988765433221000000 000011234567888888 6799
Q ss_pred cEEEEeeCCCcEEEEeCCCCeeeEE--Ec---Cccc-----c---ccccceeEEEEc----CCC-CEEEEee-C-----C
Q psy2305 78 SYFLCSSMYAPIHLWDSVGGEIKAT--YR---PYNQ-----V---DEVTHAYSLAFS----LDG-NKIYAGF-L-----S 133 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~~~~~~~~--~~---~~~~-----~---~~~~~v~~~~~~----~~~-~~l~~~~-d-----~ 133 (334)
++|++++.|+.|++||+.+++.+.. +. .+.. . .+...|++++|+ |++ .+|++|+ + .
T Consensus 224 ~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~ 303 (902)
T 2oaj_A 224 LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ 303 (902)
T ss_dssp SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence 9999999999999999999887653 21 1110 0 012268888885 443 3455553 3 2
Q ss_pred cEEEEEc-----------------------------------------------------------------------CC
Q psy2305 134 EVKIFST-----------------------------------------------------------------------DR 142 (334)
Q Consensus 134 ~i~i~d~-----------------------------------------------------------------------~~ 142 (334)
.+.+|++ .+
T Consensus 304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence 5555552 11
Q ss_pred CCCeeeee---cccccccccceE----------------------------------EEEEcCCCCcEEEEeecCCeEEE
Q psy2305 143 PGRECVSR---NLKPWFRKNIVS----------------------------------AIAINPVHPDICALGTYSKIIGL 185 (334)
Q Consensus 143 ~~~~~~~~---~~~~~~~~~~v~----------------------------------~~~~~~~~~~~l~~~~~dg~i~i 185 (334)
+...... ...+..|...|+ .++|+|+++ +|++|+.|++|++
T Consensus 384 -g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrl 461 (902)
T 2oaj_A 384 -GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRI 461 (902)
T ss_dssp -CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEE
T ss_pred -CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEE
Confidence 1110000 000112223344 445578888 9999999999999
Q ss_pred EECCCCCce--Eee----c-----cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC-------------------
Q psy2305 186 FSDSDGRPL--FFL----K-----GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG------------------- 235 (334)
Q Consensus 186 ~d~~~~~~~--~~~----~-----~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~------------------- 235 (334)
||+.++... ..+ . +|...|.+++|+|+|++|++|+ .|++|++||+....
T Consensus 462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs-~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 540 (902)
T 2oaj_A 462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI-ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRR 540 (902)
T ss_dssp EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE-TTSCEEEEEEEECCC---------------CCS
T ss_pred EECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe-cCcEEEEEEecCccccCccccCCCcccceeeee
Confidence 999887432 111 1 7889999999999999999999 89999999998631
Q ss_pred -------------------------ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccc
Q psy2305 236 -------------------------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV 290 (334)
Q Consensus 236 -------------------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 290 (334)
+++..+.+| ...+.+++|||+| +||+|+.|++|++||+++......
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h--~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~------ 611 (902)
T 2oaj_A 541 FSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN--KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM------ 611 (902)
T ss_dssp CCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC--SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE------
T ss_pred ccccCCccccccccccCCCCCCCccceeEEEEcC--CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE------
Confidence 123444444 6789999999999 999999999999999987521000
Q ss_pred ccccceec-ccccccceeeeccC-----CC---cccceeeEEeeecceeeee
Q psy2305 291 QEPLYKFS-AHQDCTNGVRWKHH-----KF---ERDLLVADATCSGQITNVK 333 (334)
Q Consensus 291 ~~~~~~~~-~~~~~i~~~~~~~s-----~~---~~~~~~~l~t~~~d~~i~~ 333 (334)
..+..+. +|.+.|++++| + || + ++|++++.|++|++
T Consensus 612 -~~~~~~~~gh~~~V~sv~F--s~~~~~~Dg~~~----~~l~sgs~D~tv~~ 656 (902)
T 2oaj_A 612 -ENIREISGAQSACVTCIEF--VIMEYGDDGYSS----ILMVCGTDMGEVIT 656 (902)
T ss_dssp -EEGGGTCSSCCCCEEEEEE--EEEECTTSSSEE----EEEEEEETTSEEEE
T ss_pred -eehhHhccccccceEEEEE--EEEecCCCCCcc----eEEEEEecCCcEEE
Confidence 0113454 89999999999 9 76 6 79999999999875
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.8e-37 Score=262.51 Aligned_cols=254 Identities=16% Similarity=0.163 Sum_probs=204.2
Q ss_pred CceeEEEEcCC----C---cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeee----ceeEEEEEEeccc
Q psy2305 2 DIEEDVDEAPD----G---TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKE----GGIIYDYVWYPKT 70 (334)
Q Consensus 2 d~V~~~~~sp~----~---~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~ 70 (334)
.+|.+++|+|+ + ++|++++.||.|++|++.+++... ......+..+. ...|.+++|++..
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK---------KVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC---------CEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc---------cccceeecccccccCCCcEEEEEEeecc
Confidence 46899999999 9 999999999999999998877400 00012444332 5789998884100
Q ss_pred ceecCCCcE-EEEeeCCCcEEEEeCCC------CeeeE-----EEcC-----ccccccccceeEEEEcCCCCEEEEee-C
Q psy2305 71 SSIDGFTSY-FLCSSMYAPIHLWDSVG------GEIKA-----TYRP-----YNQVDEVTHAYSLAFSLDGNKIYAGF-L 132 (334)
Q Consensus 71 ~~~s~~~~~-l~~~~~d~~i~iwd~~~------~~~~~-----~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~-d 132 (334)
.|++++ |++++.||.|++||+.+ ++.+. .+.. ..+.. .|.+++|+|++ +|++++ |
T Consensus 134 ---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~-~l~~~~~d 206 (397)
T 1sq9_A 134 ---DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ---FATSVDISERG-LIATGFNN 206 (397)
T ss_dssp -------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC---CCCEEEECTTS-EEEEECTT
T ss_pred ---CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC---CceEEEECCCc-eEEEEeCC
Confidence 068999 99999999999999987 65554 5532 12222 79999999999 888887 9
Q ss_pred CcEEEEEcCCCCCeeeeecccccc---c---ccceEEEEEcCCCCcEEEEeecC---CeEEEEECCCCCceEeecc----
Q psy2305 133 SEVKIFSTDRPGRECVSRNLKPWF---R---KNIVSAIAINPVHPDICALGTYS---KIIGLFSDSDGRPLFFLKG---- 199 (334)
Q Consensus 133 ~~i~i~d~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~---- 199 (334)
+.|++||+++ ++... .+.. | ...|.+++|+|+++ +|++++.| +.|++||+++++.+..+.+
T Consensus 207 g~i~i~d~~~-~~~~~----~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 207 GTVQISELST-LRPLY----NFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280 (397)
T ss_dssp SEEEEEETTT-TEEEE----EEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred CcEEEEECCC-CceeE----EEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence 9999999986 44444 4556 8 89999999999999 99999999 9999999999999999988
Q ss_pred ---------CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec------cc-------------ccCCceE
Q psy2305 200 ---------HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP------RQ-------------VSTNQRV 251 (334)
Q Consensus 200 ---------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~------~~-------------~~~~~~~ 251 (334)
|...|.+++|+|++++|++++ .|+.|++||+++ ++.+..+. .+ .+...+.
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~ 358 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF 358 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCCcee
Confidence 999999999999999999999 899999999998 67677776 33 0156789
Q ss_pred EEEecCCC----------ceEEeeecCCcEEEEeCCCC
Q psy2305 252 YFDLTSCS----------NYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 252 ~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~ 279 (334)
+++|+|++ ++|++++.||.|++|++.++
T Consensus 359 ~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 359 DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999998 79999999999999999875
No 92
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-36 Score=258.65 Aligned_cols=243 Identities=11% Similarity=0.091 Sum_probs=204.5
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.+++|+|++++|++++.||.|++|+ .+++.. ..+. .|...|.+++| +|++++|++
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~--------------~~~~-~~~~~v~~~~~-------~~~~~~l~~ 166 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL--------------NVLN-FHRAPIVSVKW-------NKDGTHIIS 166 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEE--------------EEEC-CCCSCEEEEEE-------CTTSSEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCee--------------eecc-CCCccEEEEEE-------CCCCCEEEE
Confidence 799999999999999999999999999 444433 2333 35678988888 669999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCcccc---------------------------------------------------cc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQV---------------------------------------------------DE 111 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------------------------------------------~~ 111 (334)
++.|+.|++||+.+++.+..+..+... .+
T Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 246 (425)
T 1r5m_A 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH 246 (425)
T ss_dssp EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCC
T ss_pred EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC
Confidence 999999999999888776655433221 12
Q ss_pred ccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC
Q psy2305 112 VTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD 190 (334)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 190 (334)
...|.+++|+|++++|++++ |+.|++||++. ++... .+..|...+.+++|+|++ ++++++.|+.|++||+++
T Consensus 247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~----~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQN----CFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSE----EECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCC-Cccce----EecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC
Confidence 33789999999999999888 99999999986 44444 467789999999999998 788999999999999999
Q ss_pred CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc--------------------cceeecccccCCce
Q psy2305 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC--------------------ILHTFPRQVSTNQR 250 (334)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~--------------------~~~~~~~~~~~~~~ 250 (334)
++.+..+..|...|.+++|+|++++|++++ .|+.|++||++. .. .+..+..+.....+
T Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 320 NTLLALSIVDGVPIFAGRISQDGQKYAVAF-MDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp TEEEEEEECTTCCEEEEEECTTSSEEEEEE-TTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCE
T ss_pred CcEeEecccCCccEEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 999999999999999999999999999999 899999999987 44 56666655222289
Q ss_pred EEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305 251 VYFDLTSCSNYLLSGNTNGDLSIWNVN 277 (334)
Q Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~iwd~~ 277 (334)
.+++|+|++++|++++.||.|++|+++
T Consensus 398 ~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEccCCCceEEEEecCceEEEEeec
Confidence 999999999999999999999999986
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=9.4e-36 Score=251.06 Aligned_cols=281 Identities=11% Similarity=0.125 Sum_probs=205.5
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE-
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF- 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l- 80 (334)
+.|++++|+|||++||+|+.++ ++||++.+.+.. ..... ..+..+++ .++++.+
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~----------------~~~~~-~~~~~~~~-------~~~~~~~~ 74 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI----------------MSQEM-RHLSKVRM-------LHRTNYVA 74 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE----------------EEEEC-SCCCEEEE-------CTTSSEEE
T ss_pred CceEEEEECCCCCEEEEEcCCE-EEEEecCCccee----------------eeeec-CCeEEEEE-------cCCCCEEE
Confidence 5799999999999999998775 789998876543 11111 23444444 5566666
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++.|+.|++||+.+++.+..+.... .|.+++|+++ .++++.++.|++||+....+.+. .+.. +
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~----~~~~---~ 139 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIKVDA------PVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT----DDIR---F 139 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEECSS------CEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS----CCEE---E
T ss_pred EEECCccEEEEEECCCCcEEEEEECCC------ceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE----Eecc---C
Confidence 567788999999999999988876322 7999999986 45666789999999997323333 2222 4
Q ss_pred eEEEEEcCCCCcEEEE--eecCCeEEEEECCCCC----------------ceEeeccCCCCeEEEEEccCCcEEEeeecC
Q psy2305 161 VSAIAINPVHPDICAL--GTYSKIIGLFSDSDGR----------------PLFFLKGHNGGITHLEFSSNGILLFSGARK 222 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 222 (334)
...+++++ . ++++ |+.+|.|++||+++++ .+..+.+|.+.|.+++|+|+|++|++++ .
T Consensus 140 ~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~ 215 (355)
T 3vu4_A 140 GGVCEFSN--G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-Q 215 (355)
T ss_dssp EEEEEEET--T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred CceEEEEc--c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-C
Confidence 44566777 3 5665 6899999999998765 2778899999999999999999999999 8
Q ss_pred CCe-EEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCC---------cccccc
Q psy2305 223 DCE-IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPY---------EESVQE 292 (334)
Q Consensus 223 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~ 292 (334)
|++ |++||+++ ++.+..+....+...+.+++|+|++++|++++.|++|++||+.......... ....+.
T Consensus 216 d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 3vu4_A 216 DGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS 294 (355)
T ss_dssp TCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred CCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence 998 99999998 7777777632136789999999999999999999999999998753210000 000000
Q ss_pred c-ccee-cccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 293 P-LYKF-SAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 293 ~-~~~~-~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
. ...+ ..+......++| +|++ ++|++++.||.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~a~--~~d~----~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 295 LCNFKLSVDKHVRGCKIAW--ISES----SLVVVWPHTRMIET 331 (355)
T ss_dssp SEEEECCCCTTCCCCEEEE--SSSS----EEEEEETTTTEEEE
T ss_pred eeEEEeccCCCCCceEEEE--eCCC----CEEEEEeCCCeEEE
Confidence 0 0001 111223467899 9999 99999999998764
No 94
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=6.4e-37 Score=261.74 Aligned_cols=299 Identities=10% Similarity=0.044 Sum_probs=202.2
Q ss_pred eeEEEEc---CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc----------
Q psy2305 4 EEDVDEA---PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT---------- 70 (334)
Q Consensus 4 V~~~~~s---p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 70 (334)
..++.|. |++..|++++.++.|++|+........ .............+...+..+.|.+..
T Consensus 18 p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (393)
T 4gq1_A 18 PYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPG------STGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGD 91 (393)
T ss_dssp EEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSS------CCSEEEEEEEEEECSSCEEEEEECTTCEEECC-----
T ss_pred CeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCccc------ccccceeeeEEEecCCCeeeEeecCCccccccccCCC
Confidence 4566774 444445555568889999864332110 000001122223344556666665422
Q ss_pred ---ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC--------CCCEEEEee-CCcEEEE
Q psy2305 71 ---SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL--------DGNKIYAGF-LSEVKIF 138 (334)
Q Consensus 71 ---~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~-d~~i~i~ 138 (334)
..+++++++|++++.|++|++||+.+++............+...|++++|+| |+++|++++ |++|++|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 2345677789999999999999998887643221111111222899999998 789999998 9999999
Q ss_pred EcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee---------------------
Q psy2305 139 STDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--------------------- 197 (334)
Q Consensus 139 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------------- 197 (334)
|+.+ +.... ....|...+.+++|+|++.++|++++.|++|++||+++++.....
T Consensus 172 d~~~-~~~~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 172 RLTD-EGPIL----AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEET-TEEEE----EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred ECCC-Cceee----eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 9986 44444 467888999999999998658999999999999999877543221
Q ss_pred ----ccCCCCeEEEEEc-cCCcEEEeeecCCCeEEEEEccCCCccceeeccccc----------------CCceEEEEec
Q psy2305 198 ----KGHNGGITHLEFS-SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS----------------TNQRVYFDLT 256 (334)
Q Consensus 198 ----~~~~~~i~~~~~~-~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------~~~~~~~~~s 256 (334)
.+|...+.++.|+ |+++.|++++ .|+++++||+.. +.....+..+.. ........++
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s-~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMC-KSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEEC-TTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeecccccccceeeeeecCCCCEEEEEe-CCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 3567778889986 7999999999 899999999986 433333322211 0111112233
Q ss_pred C--CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 257 S--CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 257 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
| ++.++++|+.||.|++||+.++ +....+..|...|.+++| +||| ++||++++||.+.+
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~------------~~~~~~~~~~~~V~svaf--spdG----~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEK------------DSNSIPIQLGMPIVDFCW--HQDG----SHLAIATEGSVLLT 385 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCT------------TCCEEEEECSSCEEEEEE--CTTS----SEEEEEESSEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCC------------cEEEEecCCCCcEEEEEE--cCCC----CEEEEEeCCCeEEE
Confidence 3 4557788889999999999998 566677788889999999 9999 99999999998754
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.7e-36 Score=255.77 Aligned_cols=239 Identities=12% Similarity=0.021 Sum_probs=195.1
Q ss_pred CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee--eceeEEEEEEecccceecCCCc
Q psy2305 2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK--EGGIIYDYVWYPKTSSIDGFTS 78 (334)
Q Consensus 2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~s~~~~ 78 (334)
+.|.+++|+| ++++|++++.|+.|++||+.+.... .+..+ +...|.+++| +|+++
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---------------~~~~~~~~~~~v~~~~~-------~~~~~ 176 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ---------------VFAKTDSWDYWYCCVDV-------SVSRQ 176 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE---------------EEECCCCSSCCEEEEEE-------ETTTT
T ss_pred CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE---------------EEeccCCCCCCeEEEEE-------CCCCC
Confidence 4799999999 7899999999999999999864332 33322 2366888887 66999
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCC--Ceeeeecccc
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPG--RECVSRNLKP 154 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~--~~~~~~~~~~ 154 (334)
+|++++.|+.|++||+ +++.+..+..+.. .|.+++|+|+++ +|++++ |+.|++||+++.. .... ..
T Consensus 177 ~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~ 246 (383)
T 3ei3_B 177 MLATGDSTGRLLLLGL-DGHEIFKEKLHKA-----KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI----AE 246 (383)
T ss_dssp EEEEEETTSEEEEEET-TSCEEEEEECSSS-----CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE----EE
T ss_pred EEEEECCCCCEEEEEC-CCCEEEEeccCCC-----cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE----EE
Confidence 9999999999999998 5777777776554 899999999998 888887 9999999998622 1222 23
Q ss_pred cccccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----------------CCeEEEEEccCCcEE
Q psy2305 155 WFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----------------GGITHLEFSSNGILL 216 (334)
Q Consensus 155 ~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~l 216 (334)
.+|...|.+++|+| ++. +|++++.|+.|++||+++++....+.+|. +.+..++|+|++++
T Consensus 247 ~~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 247 MPHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp EECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred ecCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence 37899999999999 998 99999999999999999988777766443 34555777788877
Q ss_pred EeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 217 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
+++ .|+.|++||+.+ ++.+..+..+.+...+..++|+|++++|++++ |+.|++||+++
T Consensus 325 -s~s-~d~~i~iwd~~~-~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 -LLN-DKRTIDIYDANS-GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -CTT-CCCCEEEEETTT-CCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred -ccC-CCCeEEEEecCC-CceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 777 899999999998 77788887755456666779999999999997 99999999875
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=278.70 Aligned_cols=250 Identities=16% Similarity=0.184 Sum_probs=202.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
++|++++|+|+|++|++|+.||.|+||++.++... ....+. .|...|.+++|+| ..++++|+
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------------~~~~l~-~h~~~V~~l~~s~-----~~~~~~l~ 71 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------LIDTLT-GHEGPVWRVDWAH-----PKFGTILA 71 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE------------EEEEEC-CCSSCEEEEEECC-----TTSCSEEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc------------cceecc-CCcCceEEEEecC-----CCCCCEEE
Confidence 57999999999999999999999999999854322 112333 3668899999844 22389999
Q ss_pred EeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 82 CSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+++.||.|++||+.+++ ....+..+.. .|.+++|+|+ ++.+++++ ||.|++||++........ ...+
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~-----~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~---~~~~ 143 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDA 143 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE---EEEC
T ss_pred EEeCCCeEEEEECCCCcccccccccCCCC-----CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee---Eeec
Confidence 99999999999999887 4555555444 8999999999 99999988 999999999873222222 4678
Q ss_pred cccceEEEEEcC-------------CCCcEEEEeecCCeEEEEECCCC----CceEeeccCCCCeEEEEEccC---CcEE
Q psy2305 157 RKNIVSAIAINP-------------VHPDICALGTYSKIIGLFSDSDG----RPLFFLKGHNGGITHLEFSSN---GILL 216 (334)
Q Consensus 157 ~~~~v~~~~~~~-------------~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l 216 (334)
|...|.+++|+| ++. ++++|+.||.|++||++++ .....+.+|...|.+++|+|+ +++|
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l 222 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 222 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred CCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE
Confidence 999999999999 477 9999999999999999877 455677889999999999999 8999
Q ss_pred EeeecCCCeEEEEEccCCCccc--eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 217 FSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 217 ~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
++++ .||.|++||++...... .......+...+.+++|+|+|++|++++.||.|++|++..+
T Consensus 223 ~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 223 ASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999 89999999998732111 11122223567888999999999999999999999999854
No 97
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=271.94 Aligned_cols=233 Identities=9% Similarity=0.050 Sum_probs=180.0
Q ss_pred cCCCcEEEEeeCCCcEEEEeCCCCeee----EEEcCccccccccceeEEEEcCC------CCEEEEee-CCcEEEEEcCC
Q psy2305 74 DGFTSYFLCSSMYAPIHLWDSVGGEIK----ATYRPYNQVDEVTHAYSLAFSLD------GNKIYAGF-LSEVKIFSTDR 142 (334)
Q Consensus 74 s~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~-d~~i~i~d~~~ 142 (334)
+|+++.|++++.|++|+|||+.+++.. ..+..+.. .|.+++|+|+ +.+|++++ ||+|++||+..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~-----~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~ 244 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG-----EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID 244 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCC-----SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC-----cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence 344556666778999999999776642 22332222 7999999997 57899887 99999999986
Q ss_pred CCCe------eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEE--EEccCC
Q psy2305 143 PGRE------CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHL--EFSSNG 213 (334)
Q Consensus 143 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~--~~~~~~ 213 (334)
.... .......+.+|...|++++|+|++ .|++|+.||+|++||++++ .+...+.+|...|.++ .|+|++
T Consensus 245 ~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 245 NATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp CSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred CccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence 3211 000001456789999999999864 8999999999999999876 4556788999999999 578888
Q ss_pred -cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccc
Q psy2305 214 -ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE 292 (334)
Q Consensus 214 -~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 292 (334)
++|++++ .|++|+|||+++ .+....+.++.....+.+++|+|+++.+++++.|++|++||++++ .
T Consensus 323 ~~~laS~S-~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~------------~ 388 (524)
T 2j04_B 323 DTVVSTVA-VDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA------------F 388 (524)
T ss_dssp CCEEEEEE-TTSEEEEECGGG-HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT------------T
T ss_pred CeEEEEec-cCCeEEEEECCC-CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc------------c
Confidence 8999999 899999999997 666666666543345678899999999999999999999999987 5
Q ss_pred ccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 293 PLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 293 ~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+..+.+|.+.|++++| +|++ ++|++|+.||+|++
T Consensus 389 ~~~~l~gH~~~V~sva~--Sp~g----~~l~Sgs~Dgtv~l 423 (524)
T 2j04_B 389 AVHPLVSRETTITAIGV--SRLH----PMVLAGSADGSLII 423 (524)
T ss_dssp CCEEEEECSSCEEEEEC--CSSC----CBCEEEETTTEEEC
T ss_pred cceeeecCCCceEEEEe--CCCC----CeEEEEECCCEEEE
Confidence 66778899999999999 9999 99999999999975
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=252.62 Aligned_cols=245 Identities=13% Similarity=0.193 Sum_probs=201.4
Q ss_pred eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCC--CCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee
Q psy2305 56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV--GGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF 131 (334)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~ 131 (334)
.|...|.+++| +|++++|++++.||.|++||+. +++....+..|.. .|++++|+++ +++|++++
T Consensus 9 ~h~~~v~~~~~-------s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 9 AHNELIHDAVL-------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp ECCCCEEEEEE-------CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEE
T ss_pred CCcccEEEEEE-------cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEEEec
Confidence 46688999888 6799999999999999999997 4556667776554 8999999987 89999988
Q ss_pred -CCcEEEEEcCCCCC-eeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCC--ceEeeccCCCCeE
Q psy2305 132 -LSEVKIFSTDRPGR-ECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNGGIT 205 (334)
Q Consensus 132 -d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~ 205 (334)
|+.|++||+.. ++ .... ....|...|.+++|+|+ +. +|++++.|+.|++||++++. ....+..|...|.
T Consensus 77 ~dg~v~iwd~~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 151 (379)
T 3jrp_A 77 YDGKVLIWKEEN-GRWSQIA---VHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 151 (379)
T ss_dssp TTSCEEEEEEET-TEEEEEE---EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred cCCEEEEEEcCC-CceeEee---eecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceE
Confidence 99999999996 33 1222 46779999999999999 88 99999999999999998873 4456678999999
Q ss_pred EEEEcc-------------CCcEEEeeecCCCeEEEEEccCCCc---cceeecccccCCceEEEEecCC---CceEEeee
Q psy2305 206 HLEFSS-------------NGILLFSGARKDCEIICWDLRNPGC---ILHTFPRQVSTNQRVYFDLTSC---SNYLLSGN 266 (334)
Q Consensus 206 ~~~~~~-------------~~~~l~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~ 266 (334)
+++|+| ++.+|++++ .|+.|++||++.... ....+..| ...+.+++|+|+ +++|++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEE
T ss_pred EEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEe
Confidence 999999 699999999 899999999987332 22344444 677899999999 89999999
Q ss_pred cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 267 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.||.|++||+..+... ....+.....|...|.+++| +|++ ++|++++.||.+++
T Consensus 229 ~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~~~~--s~~g----~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGP-------WKKTLLKEEKFPDVLWRASW--SLSG----NVLALSGGDNKVTL 282 (379)
T ss_dssp TTSCEEEEEESSTTSC-------CEEEESSSSCCSSCEEEEEE--CSSS----CCEEEEESSSSEEE
T ss_pred CCCEEEEEeCCCCCcc-------ceeeeeccccCCCcEEEEEE--cCCC----CEEEEecCCCcEEE
Confidence 9999999999986321 00122333447789999999 9999 99999999999875
No 99
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-35 Score=275.99 Aligned_cols=288 Identities=11% Similarity=0.143 Sum_probs=228.6
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
.+|.+++|+|++++|++++.||.|++|++.+++.. ..+. .|...|.+++| +|++++|+
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--------------~~~~-~~~~~v~~~~~-------s~~~~~l~ 113 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--------------VDFE-AHPDYIRSIAV-------HPTKPYVL 113 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--------------EEEE-CCSSCEEEEEE-------CSSSSEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--------------EEEe-cCCCCEEEEEE-------eCCCCEEE
Confidence 46999999999999999999999999999988865 3443 36678988888 67999999
Q ss_pred EeeCCCcEEEEeCCCC-eeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 82 CSSMYAPIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
+++.||.|++||+.++ .....+..+.. .|.+++|+| ++..|++++ |+.|++||+.. +..... ....+.
T Consensus 114 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~---~~~~~~ 184 (814)
T 3mkq_A 114 SGSDDLTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFT---LTTGQE 184 (814)
T ss_dssp EEETTSEEEEEEGGGTSEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTC-SSCSEE---EECCCT
T ss_pred EEcCCCEEEEEECCCCceEEEEEcCCCC-----cEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcceeE---EecCCC
Confidence 9999999999999886 66667766555 899999999 888899887 99999999986 333332 233455
Q ss_pred cceEEEEEcC--CCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305 159 NIVSAIAINP--VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 159 ~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
..+.+++|+| ++. ++++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++ .||.|++||+.+ +.
T Consensus 185 ~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~-~~ 261 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSST-YK 261 (814)
T ss_dssp TCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTT-CS
T ss_pred CCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-Cc
Confidence 8899999999 888 999999999999999999999999999999999999999999999999 899999999997 67
Q ss_pred cceeecccccCCceEEEEecCCCce-EEeeecCCcEEEEeCCCCCCCC--CCCcc-------------------------
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNY-LLSGNTNGDLSIWNVNTSNLPS--SPYEE------------------------- 288 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~------------------------- 288 (334)
....+..+ ...+.+++|+|++.. +++++.++.+.+|++....... +|+..
T Consensus 262 ~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 262 VEKTLNVG--LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp EEEEECCS--SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred EEEEeecC--CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 67777655 567889999999873 2444557779999887643221 11110
Q ss_pred ----ccccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305 289 ----SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV 332 (334)
Q Consensus 289 ----~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~ 332 (334)
........+..+...+.+++| +|++ ++|++++ |+.+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~--spdg----~~la~~~-~~~~~ 380 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAH--SPNG----RFVTVVG-DGEYV 380 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEE--CTTS----SEEEEEE-TTEEE
T ss_pred ccCccceeeeecCCCCccCCceeEE--CCCC----CEEEEec-CCEEE
Confidence 000111222344556788999 9999 8888887 66654
No 100
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.5e-36 Score=253.27 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=202.7
Q ss_pred eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305 57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS 133 (334)
Q Consensus 57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 133 (334)
|...|.+++| +|++++|++++.|+.|++||+.+++ ....+..+.. .|.+++|+|++++|++++ |+
T Consensus 7 ~~~~i~~~~~-------s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~dg 74 (372)
T 1k8k_C 7 LVEPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTDR 74 (372)
T ss_dssp CSSCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETTS
T ss_pred cCCCeEEEEE-------CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCCC
Confidence 5678888887 6799999999999999999999887 7777776554 899999999999999987 99
Q ss_pred cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc----eEeeccCCCCeEEEEE
Q psy2305 134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP----LFFLKGHNGGITHLEF 209 (334)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~ 209 (334)
.|++||+.. ++..... ....|...|.+++|+|+++ +|++++.|+.|++||++.++. .....+|...|.+++|
T Consensus 75 ~i~vwd~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 75 NAYVWTLKG-RTWKPTL--VILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp CEEEEEEET-TEEEEEE--ECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred eEEEEECCC-CeeeeeE--EeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 999999986 3322211 3567889999999999999 999999999999999988763 2333678899999999
Q ss_pred ccCCcEEEeeecCCCeEEEEEccC-----------------CCccceeecccccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305 210 SSNGILLFSGARKDCEIICWDLRN-----------------PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLS 272 (334)
Q Consensus 210 ~~~~~~l~~~~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 272 (334)
+|++++|++++ .|+.|++||++. .+..+..+..+ ...+.+++|+|++++|++++.|+.|+
T Consensus 151 ~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 151 HPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp CTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred cCCCCEEEEEc-CCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 99999999999 899999999641 14455555544 66788999999999999999999999
Q ss_pred EEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 273 IWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 273 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+||+.++ +.+..+..|...|.+++| +|++ ++|+++ .|+.+++
T Consensus 228 i~d~~~~------------~~~~~~~~~~~~v~~~~~--~~~~----~~l~~~-~d~~i~i 269 (372)
T 1k8k_C 228 LADADKK------------MAVATLASETLPLLAVTF--ITES----SLVAAG-HDCFPVL 269 (372)
T ss_dssp EEEGGGT------------TEEEEEECSSCCEEEEEE--EETT----EEEEEE-TTSSCEE
T ss_pred EEECCCC------------ceeEEEccCCCCeEEEEE--ecCC----CEEEEE-eCCeEEE
Confidence 9999987 778888899999999999 9999 888877 8887764
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-35 Score=249.13 Aligned_cols=252 Identities=14% Similarity=0.129 Sum_probs=202.9
Q ss_pred eeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCC----eeeEEEcCccccccccceeEEEEcC--CCCEEE
Q psy2305 55 IKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSL--DGNKIY 128 (334)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 128 (334)
.+|.+.|.+++| +|++++|++++.||.|++||+.++ +....+..+.. .|.+++|+| ++++|+
T Consensus 8 ~gH~~~v~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 8 SGHDDLVHDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIA 75 (351)
T ss_dssp CCCSSCEEEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEE
T ss_pred cccccceeEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEE
Confidence 356788999888 669999999999999999999876 35555665444 899999999 689999
Q ss_pred Eee-CCcEEEEEcCCCC--------CeeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCCceEee
Q psy2305 129 AGF-LSEVKIFSTDRPG--------RECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGRPLFFL 197 (334)
Q Consensus 129 ~~~-d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 197 (334)
+++ |+.|++||++... +... .+..|...|.+++|+|+ +. +|++++.||.|++||+++++.+..+
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLC----TLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEE----EECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEcCCCeEEEEecCCCcccccccCcceee----eecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccc
Confidence 988 9999999998632 1122 56789999999999999 88 9999999999999999888765544
Q ss_pred c-------------cCCCCeEEEEEccC---CcEEEeeecCCCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCC
Q psy2305 198 K-------------GHNGGITHLEFSSN---GILLFSGARKDCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCS 259 (334)
Q Consensus 198 ~-------------~~~~~i~~~~~~~~---~~~l~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 259 (334)
. .|...+.+++|+|+ +.+|++++ .++.+.+|+... +.. +..+..| ...+.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~h--~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKD-GKLHVAAKLPGH--KSLIRSISWAPSI 226 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTT-SCEEEEEECCCC--CSCEEEEEECCCS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCC-CceeeeeecCCC--CcceeEEEECCCC
Confidence 3 57889999999997 89999999 899997777765 443 4444444 6789999999998
Q ss_pred ----ceEEeeecCCcEEEEeCCCCCCCCCCC----------------------------------ccccccccceecccc
Q psy2305 260 ----NYLLSGNTNGDLSIWNVNTSNLPSSPY----------------------------------EESVQEPLYKFSAHQ 301 (334)
Q Consensus 260 ----~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 301 (334)
++|++++.||.|++||+..+....... .....+.+..+.+|.
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 899999999999999998753221000 001224566778899
Q ss_pred cccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 302 DCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 302 ~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
..|++++| +|++ ++|++++.||.|++
T Consensus 307 ~~v~~~~~--s~~~----~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 307 GEVWSVSW--NLTG----TILSSAGDDGKVRL 332 (351)
T ss_dssp SCEEEEEE--CSSS----CCEEEEETTSCEEE
T ss_pred ccEEEEEE--cCCC----CEEEEecCCCcEEE
Confidence 99999999 9999 99999999999875
No 102
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=247.71 Aligned_cols=242 Identities=12% Similarity=0.056 Sum_probs=206.1
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|++++|++++.||.|++||+.+++.. ..+. +...+.+++| +|++++|+
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~--~~~~v~~~~~-------~~~~~~l~ 131 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV--------------ATWK--SPVPVKRVEF-------SPCGNYFL 131 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--------------EEEE--CSSCEEEEEE-------CTTSSEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--------------EEee--cCCCeEEEEE-------ccCCCEEE
Confidence 46899999999999999999999999999988865 2333 5677888887 67999999
Q ss_pred EeeCC-----CcEEEEeCCCCee-----------eEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC
Q psy2305 82 CSSMY-----APIHLWDSVGGEI-----------KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG 144 (334)
Q Consensus 82 ~~~~d-----~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~ 144 (334)
+++.+ +.|.+||+..+.. ...+..+.... .+.+++|+|++++|++++ |+.|++||+....
T Consensus 132 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 208 (369)
T 3zwl_B 132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD---AATVAGWSTKGKYIIAGHKDGKISKYDVSNNY 208 (369)
T ss_dssp EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC---CEEEEEECGGGCEEEEEETTSEEEEEETTTTT
T ss_pred EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc---ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 99998 9999999875532 22222222111 789999999999999987 9999999998633
Q ss_pred CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC 224 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 224 (334)
.... .+..|...|.+++|+|+++ +|++++.|+.|++||+++++.+..+. +...+..++|+|+++++++++ .++
T Consensus 209 ~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~ 281 (369)
T 3zwl_B 209 EYVD----SIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-GQE 281 (369)
T ss_dssp EEEE----EEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-CCC
T ss_pred EeEE----EEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-cCC
Confidence 4443 5678899999999999999 99999999999999999999988887 778899999999999999999 787
Q ss_pred --------------eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 225 --------------EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 225 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
.+++||... ++.+..+..| ...+.+++|+|++++|++++.||.|++|+++.+
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGH--FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -------------CEEEEEETTT-CCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred CceEEEEecCCCcceeEEEecCC-Ccchhheecc--cCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 899999988 7777777766 667899999999999999999999999999876
No 103
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-34 Score=241.64 Aligned_cols=242 Identities=20% Similarity=0.274 Sum_probs=194.2
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++|+|+|++|++++.|+.|++|+....... .....+...+....+ ++++++|+
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-------~~~~~~l~ 144 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT---------------RRFVGHTKDVLSVAF-------SSDNRQIV 144 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE---------------EEEECCSSCEEEEEE-------CTTSSCEE
T ss_pred CCEEEEEECCCCCEEEEEcccccceEEeeccccee---------------eeecCCCCceeEEEE-------eecCccce
Confidence 47999999999999999999999999999887664 222234455555555 67899999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC--CEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG--NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
+++.|+.+++||+....... .....+.. .+..++|++++ .++++++ |+.|++||++. ++... .+.+|.
T Consensus 145 s~s~d~~~~~~d~~~~~~~~-~~~~~~~~---~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~----~~~~h~ 215 (340)
T 4aow_A 145 SGSRDKTIKLWNTLGVCKYT-VQDESHSE---WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKT----NHIGHT 215 (340)
T ss_dssp EEETTSCEEEECTTSCEEEE-ECSSSCSS---CEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEE----EECCCS
T ss_pred eecCCCeEEEEEeCCCceEE-EEeccccC---cccceEEccCCCCcEEEEEcCCCEEEEEECCC-Cceee----EecCCC
Confidence 99999999999987654433 22222333 78999999875 4566776 99999999996 44444 578899
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
..|++++|+|+++ +|++|+.|+.|++||+++.+.+..+.. ...+.++.|+|++.+++ ++ .|+.|++||++. +..+
T Consensus 216 ~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~-~d~~i~iwd~~~-~~~~ 290 (340)
T 4aow_A 216 GYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLC-AA-TGPSIKIWDLEG-KIIV 290 (340)
T ss_dssp SCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEE-EE-ETTEEEEEETTT-TEEE
T ss_pred CcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceee-cc-CCCEEEEEECCC-CeEE
Confidence 9999999999999 999999999999999999999888874 46799999999886654 55 599999999986 4444
Q ss_pred eeecc-------cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 239 HTFPR-------QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 239 ~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
..+.. ..+...+.+++|+|+|++|++|+.||.|+|||+++|
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 44332 223667899999999999999999999999999987
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.7e-35 Score=253.23 Aligned_cols=254 Identities=17% Similarity=0.234 Sum_probs=198.2
Q ss_pred CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-E
Q psy2305 2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-Y 79 (334)
Q Consensus 2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~ 79 (334)
+.|++++|+|+ +.+||+++.||.|++|++........ ..........+. .|...|++++| +|++. +
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----~~~~~~~~~~~~-~h~~~v~~l~~-------~~~~~~~ 196 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----PSGECQPDLRLR-GHQKEGYGLSW-------NPNLNGY 196 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC----TTCCCCCSEEEE-CCSSCCCCEEE-------CTTSTTE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC----ccccCCCcEEec-CCCCCeEEEEe-------CCCCCCe
Confidence 46899999997 67999999999999999976311100 000001123344 45677888777 66777 9
Q ss_pred EEEeeCCCcEEEEeCCCCee-------eEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCC--Ceee
Q psy2305 80 FLCSSMYAPIHLWDSVGGEI-------KATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPG--RECV 148 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~--~~~~ 148 (334)
|++++.||.|++|++.++.. ...+..+.. .|.+++|+| ++.+|++++ |+.|++||++... ....
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-----VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-----CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC-----CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee
Confidence 99999999999999987322 334444333 899999999 567888887 9999999999732 2333
Q ss_pred eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceEeeccCCCCeEEEEEccCCc-EEEeeecCCCeE
Q psy2305 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLFFLKGHNGGITHLEFSSNGI-LLFSGARKDCEI 226 (334)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i 226 (334)
.+..|...|++++|+|+++.++++|+.||.|++||+++ .+++..+..|...|.+++|+|+++ +|++++ .|+.|
T Consensus 272 ----~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~-~d~~i 346 (430)
T 2xyi_A 272 ----TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRL 346 (430)
T ss_dssp ----EEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSCC
T ss_pred ----EeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe-CCCcE
Confidence 45688999999999999986799999999999999998 567888999999999999999995 688888 89999
Q ss_pred EEEEccCCC-------------ccceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCC
Q psy2305 227 ICWDLRNPG-------------CILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 227 ~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 279 (334)
++||++..+ ..+..+.+| ...+.+++|+|+++ +|++++.||.|++|++...
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999998632 223333333 66789999999999 8999999999999998764
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=262.08 Aligned_cols=278 Identities=14% Similarity=0.150 Sum_probs=207.0
Q ss_pred EEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcEEEEeeCC
Q psy2305 8 DEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSYFLCSSMY 86 (334)
Q Consensus 8 ~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~~~~~d 86 (334)
.|+|+++.+++++ .|+.. ++.. ..+..+|...|.+++| +| ++++|++|+.|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~--------------~~~~~~h~~~V~~~~~-------s~~~~~~l~s~s~d 85 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLI--------------ATLMENEPNSITSSAV-------SPGETPYLITGSDQ 85 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEE--------------EEECTTTTSCEEEEEE-------ECSSSCEEEEEETT
T ss_pred hcCCccccccccc------ccccc-ceEE--------------eeeccCCCCceEEEEE-------CCCCCCEEEEecCC
Confidence 3567777777664 37643 3333 3554567789999888 77 89999999999
Q ss_pred CcEEEEeCCC---Ce---eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCC--CCCeeeeec------
Q psy2305 87 APIHLWDSVG---GE---IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDR--PGRECVSRN------ 151 (334)
Q Consensus 87 ~~i~iwd~~~---~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~--~~~~~~~~~------ 151 (334)
|.|++||+.+ +. ....+. |.. .|.+++|+|++++|++++ |+.|++||+.. .++......
T Consensus 86 g~v~vwd~~~~~~~~~~~~~~~~~-h~~-----~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 86 GVIKIWNLKEIIVGEVYSSSLTYD-CSS-----TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp SEEEEEEHHHHHTTCCCSCSEEEE-CSS-----CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ceEEEeECcccccCcccceeeecc-CCC-----CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 9999999876 33 122222 222 899999999999999988 99999999951 133322100
Q ss_pred ccccc--cccceEEEE--EcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305 152 LKPWF--RKNIVSAIA--INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSSNGILLFSGARKDCE 225 (334)
Q Consensus 152 ~~~~~--~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~ 225 (334)
+.+.. +...+.++. +++++. +|++++.|+.|++||+++++.+..+.+ |...|.+++|+|++++|++++ .|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~ 237 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGI 237 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSC
T ss_pred EEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCe
Confidence 01112 556677777 568888 999999999999999999999999988 889999999999999999999 8999
Q ss_pred EEEEEccCCCccceeec-ccccCCceEEE----EecCCCceEEeeecCCcEEEEeCCCCCCCC--------------CCC
Q psy2305 226 IICWDLRNPGCILHTFP-RQVSTNQRVYF----DLTSCSNYLLSGNTNGDLSIWNVNTSNLPS--------------SPY 286 (334)
Q Consensus 226 i~iwd~~~~~~~~~~~~-~~~~~~~~~~~----~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~~~ 286 (334)
|++||++. +.++..+. .+ ...+.++ .|+|++.+|++++.||.|++||+.+++... .|+
T Consensus 238 i~iwd~~~-~~~~~~~~~~~--~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 238 IDIWDIRF-NVLIRSWSFGD--HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp EEEEETTT-TEEEEEEBCTT--CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred EEEEEcCC-ccEEEEEecCC--CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 99999998 77666664 33 4578888 455678899999999999999999874220 000
Q ss_pred ccccccccceecc--cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 287 EESVQEPLYKFSA--HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 287 ~~~~~~~~~~~~~--~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.... ....+.+ |...|++++| + ++ ++|++++.|+.|++
T Consensus 315 ~~~l--~~~~~~~~~~~~~v~~l~~--~-~~----~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 315 EKGL--EELNFCGIRSLNALSTISV--S-ND----KILLTDEATSSIVM 354 (437)
T ss_dssp CSSG--GGCCCCCCCSGGGGCCEEE--E-TT----EEEEEEGGGTEEEE
T ss_pred cccc--ccceecccccCCceEEEEE--C-Cc----eEEEecCCCCeEEE
Confidence 0000 0001223 6778999999 8 78 89999999999875
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.3e-35 Score=250.89 Aligned_cols=251 Identities=13% Similarity=0.167 Sum_probs=199.6
Q ss_pred CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC-cE
Q psy2305 2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT-SY 79 (334)
Q Consensus 2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~ 79 (334)
++|.+++|+| ++++|++|+.||.|++|++.++.... ........+. .|...|.+++| +|++ ++
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-------~~~~~~~~~~-~h~~~v~~~~~-------~p~~~~~ 146 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-------PLREPVITLE-GHTKRVGIVAW-------HPTAQNV 146 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-------CBCSCSEEEE-CCSSCEEEEEE-------CSSBTTE
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-------ccCCceEEec-CCCCeEEEEEE-------CcCCCCE
Confidence 4799999999 99999999999999999998874320 0001123444 46688999888 5687 69
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEE--cCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc-c
Q psy2305 80 FLCSSMYAPIHLWDSVGGEIKATY--RPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP-W 155 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~ 155 (334)
|++++.|+.|++||+.+++.+..+ ..+.. .|.+++|+|++++|++++ |+.|++||+++ ++... .+ .
T Consensus 147 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~----~~~~ 216 (402)
T 2aq5_A 147 LLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRDGALICTSCRDKRVRVIEPRK-GTVVA----EKDR 216 (402)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEE----EEEC
T ss_pred EEEEcCCCEEEEEECCCCCccEEEecCCCCC-----ceEEEEECCCCCEEEEEecCCcEEEEeCCC-Cceee----eecc
Confidence 999999999999999999998888 44443 899999999999999987 99999999996 55444 34 5
Q ss_pred ccccc-eEEEEEcCCCCcEEEEe---ecCCeEEEEECCCCCc-eEeec-cCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305 156 FRKNI-VSAIAINPVHPDICALG---TYSKIIGLFSDSDGRP-LFFLK-GHNGGITHLEFSSNGILLFSGARKDCEIICW 229 (334)
Q Consensus 156 ~~~~~-v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw 229 (334)
.|... +.++.|+|++. +|++| +.|+.|++||+++++. +.... .|...+.+++|+|++++|++++..|+.|++|
T Consensus 217 ~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 217 PHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp SSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred CCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 67665 89999999998 89988 7899999999988754 33332 4677899999999999987544269999999
Q ss_pred EccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 230 DLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
|+......+..+..+.+...+.+++|+|++.++++ .++.+++|++.++.
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred EecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 99973323556665555678889999999999875 45689999998753
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.9e-35 Score=253.90 Aligned_cols=246 Identities=12% Similarity=0.134 Sum_probs=193.1
Q ss_pred eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe-----------eeEEEcCcccc-------ccccceeEE
Q psy2305 57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE-----------IKATYRPYNQV-------DEVTHAYSL 118 (334)
Q Consensus 57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~-------~~~~~v~~~ 118 (334)
+.+.|.+++| +|++++|++|+.||.|++||+.+++ ....+..|... .....|.++
T Consensus 27 ~~~~V~~v~~-------s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEF-------NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEE-------CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEE-------CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 5678999888 6799999999999999999998776 46667665410 000179999
Q ss_pred EEcCCC--CEEEEee-CCcEEEEEcCCCCCeee------------------------------------eeccccccccc
Q psy2305 119 AFSLDG--NKIYAGF-LSEVKIFSTDRPGRECV------------------------------------SRNLKPWFRKN 159 (334)
Q Consensus 119 ~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~------------------------------------~~~~~~~~~~~ 159 (334)
+|+|++ .+|++++ |+.|++||+.. +.... .......+|..
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEE-EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEcCCCCcceEEEeCCCCeEEEEeccc-ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 999998 7888877 99999999874 11100 00001367999
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceE-------eeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEE
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLF-------FLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWD 230 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd 230 (334)
.|.+++|+|+++ +|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++ ++|++++ .|+.|++||
T Consensus 179 ~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd 255 (447)
T 3dw8_B 179 HINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SKGTIRLCD 255 (447)
T ss_dssp CCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TTSCEEEEE
T ss_pred ceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CCCeEEEEE
Confidence 999999999999 99998 799999999984 34443 356899999999999998 9999999 899999999
Q ss_pred ccCCCcc----ceeeccccc----------CCceEEEEecCCCceEEeeecCCcEEEEeCCC-CCCCCCCCccccccccc
Q psy2305 231 LRNPGCI----LHTFPRQVS----------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT-SNLPSSPYEESVQEPLY 295 (334)
Q Consensus 231 ~~~~~~~----~~~~~~~~~----------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~ 295 (334)
++. +.. ...+..+.. ...+.+++|+|+|++|++++. +.|++||+.. + +++.
T Consensus 256 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------~~~~ 321 (447)
T 3dw8_B 256 MRA-SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------RPVE 321 (447)
T ss_dssp TTT-CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------------SCSC
T ss_pred CcC-CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------------cccc
Confidence 997 443 456665421 127899999999999999998 9999999987 5 5677
Q ss_pred eeccccccc---------------ceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 296 KFSAHQDCT---------------NGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 296 ~~~~~~~~i---------------~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+.+|...+ ..++| +|++ ++|++++.||.|++
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--s~~~----~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCW--NGSD----SVVMTGSYNNFFRM 368 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEE--CTTS----SEEEEECSTTEEEE
T ss_pred eeeccccccccccccccccccccceEEEE--CCCC----CEEEEeccCCEEEE
Confidence 777775422 23899 9999 99999999999875
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.6e-35 Score=252.74 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=182.0
Q ss_pred eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CC
Q psy2305 56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LS 133 (334)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~ 133 (334)
.+...|++++|+|. ++++||+|+.||.|+|||+.+++....+....|.. .|++++|+| ++++|++++ |+
T Consensus 117 ~~~~~V~~l~~~P~------~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~---~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 117 PFDRRATSLAWHPT------HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG---SITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp ECSSCEEEEEECSS------CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC---CCCEEEECSSCTTEEEEECSSS
T ss_pred CCCCCEEEEEEeCC------CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC---CEEEEEEeCCCCCEEEEEeCCC
Confidence 35677999999552 56789999999999999998877665555444444 899999998 688999887 99
Q ss_pred cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305 134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG 213 (334)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 213 (334)
+|++||++. ....... ....+...+.+++|+|++. +|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++
T Consensus 188 ~v~iwd~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 188 TTRLQDFKG--NILRVFA-SSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp CEEEEETTS--CEEEEEE-CCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTC
T ss_pred EEEEeeccC--CceeEEe-ccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCC
Confidence 999999984 3333210 2233455688999999999 99999999999999986 56677889999999999999988
Q ss_pred c-EEEeeecCCCeEEEEEccCCCccceee-cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccc
Q psy2305 214 I-LLFSGARKDCEIICWDLRNPGCILHTF-PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ 291 (334)
Q Consensus 214 ~-~l~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 291 (334)
. +|++++ .|+.|++||++. ......+ ....+...+.+++|+|+|++|++++.||.|++||+.++
T Consensus 263 ~~~~~s~s-~d~~v~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~------------ 328 (435)
T 4e54_B 263 DWFLATAS-VDQTVKIWDLRQ-VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW------------ 328 (435)
T ss_dssp SSEEEEEE-TTSBCCEEETTT-CCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS------------
T ss_pred ceEEEEec-CcceeeEEeccc-ccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC------------
Confidence 6 677888 899999999987 3322222 22234678899999999999999999999999999987
Q ss_pred cccceeccccc------ccceeeeccCCCcccceeeEEeee
Q psy2305 292 EPLYKFSAHQD------CTNGVRWKHHKFERDLLVADATCS 326 (334)
Q Consensus 292 ~~~~~~~~~~~------~i~~~~~~~s~~~~~~~~~l~t~~ 326 (334)
.....+..|.. .+....| +|++ .++++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~ 363 (435)
T 4e54_B 329 DCPLGLIPHPHRHFQHLTPIKAAW--HPRY----NLIVVGR 363 (435)
T ss_dssp SSEEEECCCCCCCCSSSCCCBCEE--CSSS----SCEEEEC
T ss_pred ccceEEecccccccccceeEEEEE--cCCC----CEEEEEE
Confidence 33344433322 2345567 7777 6666553
No 109
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=234.28 Aligned_cols=236 Identities=16% Similarity=0.192 Sum_probs=198.2
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
..|.+++|+|++++|++++.||.|++|++....... ....+. .|...|.++.| ++++|+
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------~~~~~~-~~~~~i~~~~~---------~~~~l~ 118 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-----------PLYTLI-GHQGNVCSLSF---------QDGVVI 118 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-----------C-CEEC-CCSSCEEEEEE---------ETTEEE
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-----------cccchh-hcccCEEEEEe---------cCCEEE
Confidence 468999999999999999999999999987654220 112333 35678888877 567999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-cc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-RK 158 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-~~ 158 (334)
+++.|+.|++|| .++....+..+.. .+.+++|+| +++++++++ |+.|++||.. .... .+.. |.
T Consensus 119 ~~~~d~~i~~~d--~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~----~~~~~~~ 184 (313)
T 3odt_A 119 SGSWDKTAKVWK--EGSLVYNLQAHNA-----SVWDAKVVSFSENKFLTASADKTIKLWQND---KVIK----TFSGIHN 184 (313)
T ss_dssp EEETTSEEEEEE--TTEEEEEEECCSS-----CEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEE----EECSSCS
T ss_pred EEeCCCCEEEEc--CCcEEEecccCCC-----ceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEE----EEeccCc
Confidence 999999999999 6677777776554 899999998 889999887 9999999943 3333 2344 88
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
..+.+++|+|++. +++++.||.|++||+++++.+..+.+|...|.+++|+|++ .|++++ .|+.|++||+++ ++..
T Consensus 185 ~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~-~~~~ 259 (313)
T 3odt_A 185 DVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKEN-GSLK 259 (313)
T ss_dssp SCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTT-CCEE
T ss_pred ccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCC-Ccee
Confidence 9999999999985 8889999999999999999999999999999999999999 588898 899999999998 7777
Q ss_pred eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
..+..+ ...+.+++|+|+++ +++++.||.|++||+++++
T Consensus 260 ~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 260 QVITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred EEEecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 777765 56788999999998 5568899999999999874
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=230.98 Aligned_cols=244 Identities=15% Similarity=0.195 Sum_probs=197.5
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|++++|+|++++||+|+.||+|++|++.+++.. ..+.. |...+.++.+ ++..++
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~--------------~~~~~-h~~~~~~~~~---------~~~~l~ 123 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--------------RNMTS-HSARVGSLSW---------NSYILS 123 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------------EEEEC-CSSCEEEEEE---------ETTEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE--------------EEecC-ccceEEEeec---------CCCEEE
Confidence 46999999999999999999999999999998876 34443 4455555443 677999
Q ss_pred EeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++.++.+++|+...+. .+..+..+.. .+..+.+++++++|++++ |+.|++||+.+ ++...........+..
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLASGGNDNLVNVWPSAP-GEGGWVPLQTFTQHQG 197 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESSC-BTTBSCCSEEECCCCS
T ss_pred EEecCCceEeeecCCCceeEEEEcCccC-----ceEEEEEcCCCCEEEEEecCcceeEEECCC-CcccccceeeecccCC
Confidence 99999999999987654 4455555444 889999999999999987 99999999986 3322111114566788
Q ss_pred ceEEEEEcCCCCcEE--EEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee-cCCCeEEEEEccCCCc
Q psy2305 160 IVSAIAINPVHPDIC--ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA-RKDCEIICWDLRNPGC 236 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~iwd~~~~~~ 236 (334)
.|.+++++|++...+ ++++.++.|++||.+......... +...+..+.|+|++..+++++ ..|+.|++||+++ ++
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-~~ 275 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MA 275 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CC
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC-Cc
Confidence 999999999887454 356788999999998887766554 677899999999998877643 1589999999998 78
Q ss_pred cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
++..+.+| ...+.+++|+|+|++|++++.||+|+|||+...
T Consensus 276 ~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 276 KVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 88888887 678999999999999999999999999999764
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=264.94 Aligned_cols=245 Identities=13% Similarity=0.197 Sum_probs=202.5
Q ss_pred eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCC--CCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee
Q psy2305 56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV--GGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF 131 (334)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~ 131 (334)
+|.+.|++++| +|++++|++|+.||.|++||+. +++....+..|.. .|++++|+|+ +++|++++
T Consensus 7 gH~~~V~~l~~-------s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~~~l~s~s 74 (753)
T 3jro_A 7 AHNELIHDAVL-------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS 74 (753)
T ss_dssp -CCCCEEEECC-------CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCTTSCSEEEEEE
T ss_pred cCcceeEEEEE-------CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcC-----ceEEEEecCCCCCCEEEEEe
Confidence 46688988877 6799999999999999999987 4456667776544 8999999998 89999988
Q ss_pred -CCcEEEEEcCCCCC-eeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCC--CceEeeccCCCCeE
Q psy2305 132 -LSEVKIFSTDRPGR-ECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDG--RPLFFLKGHNGGIT 205 (334)
Q Consensus 132 -d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~ 205 (334)
||.|++||+.+ +. .... ....|...|.+++|+|+ +. ++++|+.||.|++||++++ .....+.+|...|.
T Consensus 75 ~Dg~I~vwd~~~-~~~~~~~---~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~ 149 (753)
T 3jro_A 75 YDGKVLIWKEEN-GRWSQIA---VHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (753)
T ss_dssp TTSCEEEEEEET-TEEEEEE---EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred CCCeEEEEECCC-Ccccccc---cccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence 99999999996 33 1222 56789999999999999 88 9999999999999999877 34556678999999
Q ss_pred EEEEcc-------------CCcEEEeeecCCCeEEEEEccCCC---ccceeecccccCCceEEEEecCC---CceEEeee
Q psy2305 206 HLEFSS-------------NGILLFSGARKDCEIICWDLRNPG---CILHTFPRQVSTNQRVYFDLTSC---SNYLLSGN 266 (334)
Q Consensus 206 ~~~~~~-------------~~~~l~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~ 266 (334)
+++|+| ++++|++++ .||.|++||++... .....+..| ...+.+++|+|+ +++|++++
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEE
T ss_pred EEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEe
Confidence 999999 589999999 89999999998732 233444544 678999999999 99999999
Q ss_pred cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 267 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.||.|++||+.++... ..........|...|++++| +|++ ++|++++.||.|++
T Consensus 227 ~Dg~I~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~l~~--spdg----~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGP-------WKKTLLKEEKFPDVLWRASW--SLSG----NVLALSGGDNKVTL 280 (753)
T ss_dssp SSSCEEEEEESSSSSC-------CBCCBSSSSCCSSCCCCEEE--CTTT----CCEEEECSSSCEEC
T ss_pred cCCEEEEecCCCCCCc-------ceeEEeccCCCCCceEEEEE--cCCC----CEEEEEcCCCEEEE
Confidence 9999999999986321 00133444568889999999 9999 99999999999875
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=240.82 Aligned_cols=249 Identities=13% Similarity=0.090 Sum_probs=196.9
Q ss_pred CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
..|.+++|+| ++.+|++++.||.|++||+.+++.. ..+ .+...+.++.|.|. ++++.++
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------------~~~--~~~~~~~~~~~~~~----~~~~~~~ 159 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--------------DVF--NFEETVYSHHMSPV----STKHCLV 159 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--------------EEE--ECSSCEEEEEECSS----CSSCCEE
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--------------eec--cCCCceeeeEeecC----CCCCcEE
Confidence 4699999999 7789999999999999999988764 222 24567888888653 5577799
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCE-EEEee-CCcEEEEEcCCCCCeeeee--------
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYAGF-LSEVKIFSTDRPGRECVSR-------- 150 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~~~~~~~~~~-------- 150 (334)
++++.|+.|++||+.+++....+..+.. .|.+++|+|++++ |++++ |+.|++||++.........
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 9999999999999999998888887554 8999999999984 77777 9999999998643232211
Q ss_pred ---cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----CCeEEEEEccCCcEEEeeecC
Q psy2305 151 ---NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----GGITHLEFSSNGILLFSGARK 222 (334)
Q Consensus 151 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~ 222 (334)
......|...|.+++|+|+++ +|++++.||.|++||+++++....+..+. ..+........+..+++++ .
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP-Y 312 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE-E
T ss_pred eeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe-c
Confidence 002257889999999999999 99999999999999999887665543321 1122222223344566666 6
Q ss_pred CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
++.|++||+.+ +..+..+..| ...+.+++|+|++++|++++.||.|++||+.+++
T Consensus 313 ~~~i~v~d~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 313 GSTIAVYTVYS-GEQITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp TTEEEEEETTT-CCEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CCEEEEEECcC-CcceeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 99999999998 7778888776 6678999999999999999999999999999973
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5e-33 Score=240.83 Aligned_cols=277 Identities=11% Similarity=0.080 Sum_probs=217.7
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.+.+++|+|++.++++++.++.|++||+.+++....... ..+ ..|...|.+++| +++++++++
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------~~~-~~~~~~v~~~~~-------~~~~~~~~s 186 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP---------EKY-KKKLGFVETISI-------PEHNELWVS 186 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC---------HHH-HTTCCEEEEEEE-------GGGTEEEEE
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc---------ccc-cccCCceeEEEE-------cCCCEEEEE
Confidence 356899999888888888899999999998876410000 011 134567888777 668999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++.|+.|++||+.+++.+..+..+.. .+.+++|+|+++.++ ++. ++.|++||+++ ++... .+.. ...
T Consensus 187 ~~~d~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~----~~~~-~~~ 255 (433)
T 3bws_A 187 QMQANAVHVFDLKTLAYKATVDLTGK-----WSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIR----KTDK-IGL 255 (433)
T ss_dssp EGGGTEEEEEETTTCCEEEEEECSSS-----SEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEE----ECCC-CSE
T ss_pred ECCCCEEEEEECCCceEEEEEcCCCC-----CeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEE----EecC-CCC
Confidence 99999999999999988888875444 789999999999886 554 89999999986 44443 2333 355
Q ss_pred eEEEEEcCCCCcEEEEee--------cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEE-eeecCCCeEEEEEc
Q psy2305 161 VSAIAINPVHPDICALGT--------YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF-SGARKDCEIICWDL 231 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~d~~i~iwd~ 231 (334)
+.+++|+|+++ .+++++ .|+.|++||+++++.+..+. |...+.+++|+|+++.++ +++ .++.|++||+
T Consensus 256 ~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~-~~~~v~v~d~ 332 (433)
T 3bws_A 256 PRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDM-CCSKIEVYDL 332 (433)
T ss_dssp EEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEET-TTTEEEEEET
T ss_pred ceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEec-CCCEEEEEEC
Confidence 89999999999 888777 48899999999887776653 566889999999997664 456 8999999999
Q ss_pred cCCCccceeecccccCCceEEEEecCCCceEEeeec---------------CCcEEEEeCCCCCCCCCCCccccccccce
Q psy2305 232 RNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT---------------NGDLSIWNVNTSNLPSSPYEESVQEPLYK 296 (334)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 296 (334)
.+ ++....+. ....+.+++|+|+|++|++++. ||.|++||+.++ +.+..
T Consensus 333 ~~-~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~------------~~~~~ 396 (433)
T 3bws_A 333 KE-KKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD------------TVKEF 396 (433)
T ss_dssp TT-TEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT------------EEEEE
T ss_pred CC-CcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC------------cEEEE
Confidence 87 66555554 2456788999999998888776 579999999987 56666
Q ss_pred ecccccccceeeeccCCCcccceeeEEeeec-ceeeee
Q psy2305 297 FSAHQDCTNGVRWKHHKFERDLLVADATCSG-QITNVK 333 (334)
Q Consensus 297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~-d~~i~~ 333 (334)
+.. ...+.+++| +|++ ++|++++. |+.+++
T Consensus 397 ~~~-~~~~~~~~~--s~dg----~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 397 WEA-GNQPTGLDV--SPDN----RYLVISDFLDHQIRV 427 (433)
T ss_dssp EEC-SSSEEEEEE--CTTS----CEEEEEETTTTEEEE
T ss_pred ecC-CCCCceEEE--cCCC----CEEEEEECCCCeEEE
Confidence 655 456899999 9999 99888775 998875
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.3e-34 Score=237.69 Aligned_cols=241 Identities=11% Similarity=-0.013 Sum_probs=195.1
Q ss_pred eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcCCCC-EEEEee
Q psy2305 56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF 131 (334)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 131 (334)
.|.+.|.+++| +|++++|++++.|+.|++|++.+++ ....+..+.. .|.+++|+|+++ +|++++
T Consensus 9 ~h~~~v~~~~~-------s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 9 APKDYISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp CCSSCEEEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEE
T ss_pred CCCCcEEEEEE-------cCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEc
Confidence 57788999888 5689999999999999999998776 2333333333 899999999999 999887
Q ss_pred -CCcEEEEEc-CCCCCeeeeecccccc--cccceEEEEEcCCCCcEEEEeecCCeEEEEECCC---------CCceEeec
Q psy2305 132 -LSEVKIFST-DRPGRECVSRNLKPWF--RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD---------GRPLFFLK 198 (334)
Q Consensus 132 -d~~i~i~d~-~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~ 198 (334)
|+.|++||+ .. +.. . .+.. |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+.
T Consensus 77 ~dg~i~~wd~~~~-~~~-~----~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 77 VQGEILKVDLIGS-PSF-Q----ALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp TTSCEEEECSSSS-SSE-E----ECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred CCCeEEEEEeccC-Cce-E----eccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 999999999 75 333 3 4667 999999999999 77 999999999999999988 77777777
Q ss_pred cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC-CCccceeecccccCCceEEEEecC-CCceEEeeecCCcEEEEeC
Q psy2305 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN-PGCILHTFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNV 276 (334)
Q Consensus 199 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~ 276 (334)
|...|.+++|+|++ +++++ .|+.|++||++. ......... ......+.+++|+| +++++++++.||.|++|++
T Consensus 149 -~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp -SCCCEEEEEECSSE--EEEEE-STTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred -eCCceEEEEecCCc--EEEEe-CCCeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 88999999999987 88888 899999999986 333222222 22356788999999 9999999999999999999
Q ss_pred CCCCCCCCCCccccccccceeccccc---------ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 277 NTSNLPSSPYEESVQEPLYKFSAHQD---------CTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
...... ...+....+..|.. .|.+++| +|++ ++|++++.||.|++
T Consensus 224 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~----~~l~~~~~dg~i~v 277 (342)
T 1yfq_A 224 DDQGDD------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEF--SPRH----KFLYTAGSDGIISC 277 (342)
T ss_dssp CTTCCS------TTCTTCEEEECCCCCTTCCSSCCCEEEEEE--CTTT----CCEEEEETTSCEEE
T ss_pred cCCCcc------cccccceeeecccccccccccceeEEEEEE--cCCC----CEEEEecCCceEEE
Confidence 875000 00034556666644 8999999 9999 99999999999875
No 115
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-33 Score=242.04 Aligned_cols=229 Identities=17% Similarity=0.229 Sum_probs=189.3
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.+++| ++++|++|+.||.|++||+.+++.. ..+. .|...|.+++| ++.+++
T Consensus 174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~l~~---------~~~~l~ 227 (435)
T 1p22_A 174 GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML--------------NTLI-HHCEAVLHLRF---------NNGMMV 227 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE--------------EEEC-CCCSCEEEEEC---------CTTEEE
T ss_pred CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE--------------EEEc-CCCCcEEEEEE---------cCCEEE
Confidence 46888888 7889999999999999999998865 3444 35678888877 345899
Q ss_pred EeeCCCcEEEEeCCCCeee---EEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIK---ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
+++.||.|++||+.+++.. ..+..+.. .|.+++| ++++|++++ |+.|++||+++ ++... .+.+|
T Consensus 228 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-~~~~~----~~~~~ 295 (435)
T 1p22_A 228 TCSKDRSIAVWDMASPTDITLRRVLVGHRA-----AVNVVDF--DDKYIVSASGDRTIKVWNTST-CEFVR----TLNGH 295 (435)
T ss_dssp EEETTSCEEEEECSSSSCCEEEEEECCCSS-----CEEEEEE--ETTEEEEEETTSEEEEEETTT-CCEEE----EEECC
T ss_pred EeeCCCcEEEEeCCCCCCceeeeEecCCCC-----cEEEEEe--CCCEEEEEeCCCeEEEEECCc-CcEEE----EEcCC
Confidence 9999999999999887655 44554443 8899998 678999887 99999999997 55555 57789
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc-
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC- 236 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~- 236 (334)
...|.++.++ +. ++++|+.||.|++||+++++++..+.+|...|.+++| ++++|++++ .||.|++||++. +.
T Consensus 296 ~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~-~~~ 368 (435)
T 1p22_A 296 KRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVA-ALD 368 (435)
T ss_dssp SSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHH-HTS
T ss_pred CCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCC-CCC
Confidence 9999999995 45 9999999999999999999999999999999999999 788999999 899999999976 32
Q ss_pred --------cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 237 --------ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 237 --------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
.+..+..| ...+.+++| ++++|++++.||.|++||+.+.
T Consensus 369 ~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 369 PRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp TTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred ccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 45566655 556777877 7889999999999999999886
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1e-32 Score=223.65 Aligned_cols=261 Identities=11% Similarity=0.069 Sum_probs=179.3
Q ss_pred eeEEEEcCCCc---EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEec------------
Q psy2305 4 EEDVDEAPDGT---CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYP------------ 68 (334)
Q Consensus 4 V~~~~~sp~~~---~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------ 68 (334)
|.++-|-.-|- .+++++. ..|++|+..+...- +...++.. +..+|..+.+.|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ 108 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQW-----------EKLYTWHF-AEVPVLQIVPVPDVYNLVCVALGN 108 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBE-----------EEEEEEEC-CSSCEEEECCCTTCCSCEEEEECS
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccc-----------eeeEEEec-cCceeEEEEEcCcccceeeeeecc
Confidence 44555644332 5677765 58999999987311 01133333 345677776655
Q ss_pred ------ccceecCC----CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcE
Q psy2305 69 ------KTSSIDGF----TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEV 135 (334)
Q Consensus 69 ------~~~~~s~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i 135 (334)
+.++++|+ ++++++++.+ +.+|++ ++++++.++. |+.|
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l---------------------------~~g~lv~ss~~g~d~~V 159 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL---------------------------TKRRLVSSSGTLSDQQV 159 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------TTTEEEEEESSSTTCEE
T ss_pred ccccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------CCCcEEEecccCCCCcE
Confidence 23455666 6666665532 445543 3444455432 7888
Q ss_pred EEEEcCCCCCeeeeecccccccccceEEEEEcC---CCCcEEEEeecCCeEEEEECCCCCceEeeccCC---CCeEEEEE
Q psy2305 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP---VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN---GGITHLEF 209 (334)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~ 209 (334)
++|++...++.+. ....|...++.++|+| ++. +|++++.|++|+|||++++++++++.+|. ..+.+++|
T Consensus 160 ~~~~~s~dG~~~~----s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 160 EVMTFAEDGGGKE----NQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp EEEEECTTSCEEE----EEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred EEEEECCCCceee----eeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 8888865455554 4678888899999999 667 99999999999999999999999998654 36778899
Q ss_pred ccCCcEE------------EeeecCCCeEEEEEccCCCccceeec---ccccCCceEEEEecCCCceEEeeecCCcEEEE
Q psy2305 210 SSNGILL------------FSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274 (334)
Q Consensus 210 ~~~~~~l------------~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 274 (334)
+|+|+++ ++|+ .|++|++||..+ ++.+..+. ...+.....+..+ ++.++++++.|++|+||
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs-~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIW 310 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRS-PVFQLIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIW 310 (356)
T ss_dssp EETTEEEEEEC-------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred CCCCCEEEEeccCCCcceeeccC-CCcEEEEEECCC-CEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEE
Confidence 9999976 5577 799999999987 66554432 1111222333333 37889999999999999
Q ss_pred eCCCCCCCCCCCccccccccceecccccccc-eeeeccCCCcccceeeEEeeecceeeee
Q psy2305 275 NVNTSNLPSSPYEESVQEPLYKFSAHQDCTN-GVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|+.++ +.+.++.+|...+. .++| +||+ ++|++|+.|++|++
T Consensus 311 Dl~tG------------k~l~tL~gH~~~vvs~vaf--SPDG----~~LaSGS~D~TIkl 352 (356)
T 2w18_A 311 DLLLG------------QCTALLPPVSDQHWSFVKW--SGTD----SHLLAGQKDGNIFV 352 (356)
T ss_dssp ETTTC------------SEEEEECCC--CCCCEEEE--CSSS----SEEEEECTTSCEEE
T ss_pred ECCCC------------cEEEEecCCCCCeEEEEEE--CCCC----CEEEEEECCCcEEE
Confidence 99998 78889999987665 5899 9999 99999999999986
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.2e-31 Score=228.99 Aligned_cols=259 Identities=11% Similarity=0.071 Sum_probs=205.9
Q ss_pred cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE-EEeeCCCcEEEE
Q psy2305 14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHLW 92 (334)
Q Consensus 14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~iw 92 (334)
..+++++.|+.|++||+.+++.. ..+.. + ..+.+++| +|++++| ++++.|+.|++|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~--------------~~~~~-~-~~~~~~~~-------s~dg~~l~~~~~~d~~i~v~ 59 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVT--------------ATIPV-G-SNPMGAVI-------SPDGTKVYVANAHSNDVSII 59 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE--------------EEEEC-S-SSEEEEEE-------CTTSSEEEEEEGGGTEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEE--------------EEeec-C-CCcceEEE-------CCCCCEEEEECCCCCeEEEE
Confidence 46788889999999999988765 23332 2 34666666 7799876 667789999999
Q ss_pred eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEE-ee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305 93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA-GF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH 170 (334)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (334)
|+.+++.+..+..+. .+.+++|+|++++|++ +. ++.|++||+.+ ++... .+. +...+.+++|+|++
T Consensus 60 d~~~~~~~~~~~~~~------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~~~----~~~-~~~~~~~~~~s~dg 127 (391)
T 1l0q_A 60 DTATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAG----TVK-TGKSPLGLALSPDG 127 (391)
T ss_dssp ETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEE----EEE-CSSSEEEEEECTTS
T ss_pred ECCCCeEEEEEECCC------CccceEECCCCCEEEEEECCCCEEEEEECCC-CeEEE----EEe-CCCCcceEEECCCC
Confidence 999999988876543 7899999999998864 44 79999999986 44433 223 34578999999999
Q ss_pred CcEE-EEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEE-eeecCCCeEEEEEccCCCccceeecccccCC
Q psy2305 171 PDIC-ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF-SGARKDCEIICWDLRNPGCILHTFPRQVSTN 248 (334)
Q Consensus 171 ~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 248 (334)
+ .+ ++++.++.|++||+++++.+..+..+ ..+.+++|+|++++|+ +++ .++.|++||+++ ++....+.. ..
T Consensus 128 ~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~-~~~~v~~~d~~~-~~~~~~~~~---~~ 200 (391)
T 1l0q_A 128 K-KLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF-DSMSISVIDTVT-NSVIDTVKV---EA 200 (391)
T ss_dssp S-EEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET-TTTEEEEEETTT-TEEEEEEEC---SS
T ss_pred C-EEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC-CCCEEEEEECCC-CeEEEEEec---CC
Confidence 9 55 78888999999999999888888755 4579999999999884 556 789999999987 555555542 44
Q ss_pred ceEEEEecCCCceEEeee---cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeE-Ee
Q psy2305 249 QRVYFDLTSCSNYLLSGN---TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVAD-AT 324 (334)
Q Consensus 249 ~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l-~t 324 (334)
.+.+++|+|++++|++++ .++.|++||+.++ +.+..+..|. .+..++| +|++ ++| ++
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~-~~~~~~~--s~dg----~~l~~s 261 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------------KITARIPVGP-DPAGIAV--TPDG----KKVYVA 261 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------------EEEEEEECCS-SEEEEEE--CTTS----SEEEEE
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCC------------eEEEEEecCC-CccEEEE--ccCC----CEEEEE
Confidence 677899999999999887 6899999999987 5666666654 4789999 9999 876 67
Q ss_pred eecceeeee
Q psy2305 325 CSGQITNVK 333 (334)
Q Consensus 325 ~~~d~~i~~ 333 (334)
++.|+.+++
T Consensus 262 ~~~d~~v~v 270 (391)
T 1l0q_A 262 LSFXNTVSV 270 (391)
T ss_dssp ETTTTEEEE
T ss_pred cCCCCEEEE
Confidence 788988864
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=236.78 Aligned_cols=240 Identities=11% Similarity=-0.054 Sum_probs=191.2
Q ss_pred ceeEEEEcCCCcEE-EEeeCCCeEEEEECC--CCCceeeeeCCCCCCCCcceeeee-eeceeEEEEEEecccceecCCCc
Q psy2305 3 IEEDVDEAPDGTCL-LTNSNDNHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKI-KEGGIIYDYVWYPKTSSIDGFTS 78 (334)
Q Consensus 3 ~V~~~~~sp~~~~l-~~~~~d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~ 78 (334)
.|++++|+|+|++| ++++.||.|++|++. +++.. ..+.. .+...|.+++| +|+++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~--------------~~~~~~~~~~~v~~~~~-------sp~~~ 162 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL--------------KLRKRFCFSKRPNAISI-------AEDDT 162 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE--------------EEEEEEECSSCEEEEEE-------CTTSS
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee--------------eeeecccCCCCceEEEE-------cCCCC
Confidence 69999999999996 899999999999998 66654 34432 34567888877 77999
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeE----EEcCccccccccceeEEEEcCC---CCEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKA----TYRPYNQVDEVTHAYSLAFSLD---GNKIYAGF-LSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 150 (334)
+|++++.++.|++|++.+++... .+..+.. .|++++|+|+ +++|++++ |+.|++||+.+ +..+..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~- 235 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS-----MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDK- 235 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS-----CEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEE-
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccC-----ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeee-
Confidence 99999999999999998776543 3333332 8999999999 99999988 99999999987 554442
Q ss_pred cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-------------------------CCCCeE
Q psy2305 151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-------------------------HNGGIT 205 (334)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------------~~~~i~ 205 (334)
...+|...|.+++|+ +++ +|++++.|+.|++||+++++.+..+.. ....|.
T Consensus 236 --~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 236 --WLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp --ECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred --eecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 356899999999999 998 999999999999999999998887752 235789
Q ss_pred EEEEccCCcEEEeeecCCCeEEEEEc--cCCC---ccceeecccccCCceEEEEecCCCceEEeeec------CCcEEEE
Q psy2305 206 HLEFSSNGILLFSGARKDCEIICWDL--RNPG---CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT------NGDLSIW 274 (334)
Q Consensus 206 ~~~~~~~~~~l~~~~~~d~~i~iwd~--~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~iw 274 (334)
+++|+|++++|+++++.++.|++|++ .. + ..+..+..+ ..+.+++|+|++.++++++. +..|.+|
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 99999999999988756999999999 43 3 334444443 67889999996555555443 4558888
Q ss_pred eCCC
Q psy2305 275 NVNT 278 (334)
Q Consensus 275 d~~~ 278 (334)
.+..
T Consensus 388 ~~~~ 391 (450)
T 2vdu_B 388 EYNL 391 (450)
T ss_dssp EEET
T ss_pred EEEc
Confidence 7654
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=233.57 Aligned_cols=230 Identities=8% Similarity=-0.030 Sum_probs=179.7
Q ss_pred ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC------
Q psy2305 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP------ 143 (334)
Q Consensus 71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~------ 143 (334)
..+.+++++|++|+.||.|++||+.+++.+..+.. . .|.++.|+|+ +++++ |+.|++|+....
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~--~-----~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITT--P-----NPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE--E-----CCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEET
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEec--C-----CceeeeeCCc---eEEecCCCeEEEEEccCceEEeec
Confidence 34456889999999999999999999988877761 2 6788889998 77776 999999987621
Q ss_pred --CCeeeeecccccccccceEEEEEcC--CCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCcEEEe
Q psy2305 144 --GRECVSRNLKPWFRKNIVSAIAINP--VHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLFS 218 (334)
Q Consensus 144 --~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~ 218 (334)
+..+.. ...+|...|.+++|+| +++ ++++++.||.|++||+++++...... .+...+.+++|+|++++|++
T Consensus 112 ~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 112 KTNKVLRE---IEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp TTCCEEEE---EECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred CCcceeEE---eecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 221221 2335668899999999 999 99999999999999999998876663 35568999999999999999
Q ss_pred eecCCCeEEEEEccCCCccc-eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305 219 GARKDCEIICWDLRNPGCIL-HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF 297 (334)
Q Consensus 219 ~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 297 (334)
|+ .|+.|++||+++ +... ..+.. .+...+.+++|+|++.+|++++ ++.|++||+++.+.. ..+..+
T Consensus 188 g~-~dg~i~iwd~~~-~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~---------~~~~~~ 254 (343)
T 3lrv_A 188 YS-PDGILDVYNLSS-PDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT---------LAYPTY 254 (343)
T ss_dssp EC-TTSCEEEEESSC-TTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC---------BSSCCC
T ss_pred Ec-CCCEEEEEECCC-CCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc---------eeeccc
Confidence 99 899999999998 5544 66665 1367899999999999999999 559999999987432 223333
Q ss_pred cccccccc--eeeeccCCCcccceeeEEeeec-ceeeee
Q psy2305 298 SAHQDCTN--GVRWKHHKFERDLLVADATCSG-QITNVK 333 (334)
Q Consensus 298 ~~~~~~i~--~~~~~~s~~~~~~~~~l~t~~~-d~~i~~ 333 (334)
..|...+. +++| +|++ ++|++++. |+.+++
T Consensus 255 ~~~~~~~~~~~~~~--~~~g----~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 255 TIPEFKTGTVTYDI--DDSG----KNMIAYSNESNSLTI 287 (343)
T ss_dssp BC-----CCEEEEE--CTTS----SEEEEEETTTTEEEE
T ss_pred ccccccccceEEEE--CCCC----CEEEEecCCCCcEEE
Confidence 33444555 5999 9999 99999888 887765
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.3e-33 Score=238.78 Aligned_cols=247 Identities=8% Similarity=-0.097 Sum_probs=169.1
Q ss_pred EcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce-ecCCCcEEEEeeCCC
Q psy2305 9 EAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS-IDGFTSYFLCSSMYA 87 (334)
Q Consensus 9 ~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~s~~~~~l~~~~~d~ 87 (334)
+++++.+||+++.|++|+|||..+++..... ....+ .+|.+.|++++|+|.... ...++++|++++.|+
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~---------~~~~~-~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQH---------VLGGK-SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEE---------EECTT-TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceee---------eeccc-CCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 3446678999999999999999887653100 00112 246789999999773222 123789999999999
Q ss_pred cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeec--------------
Q psy2305 88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRN-------------- 151 (334)
Q Consensus 88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~-------------- 151 (334)
+|+|||+.++.....+..+.. .|.+++|+|++. +|++++ |+.|++||+.+. +......
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~-~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSS-----PGISVQFRPSNPNQLIVGERNGNIRIFDWTLN-LSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTCC-C----------CSCCCSEEEE
T ss_pred eEEEEECCCCceeeeecCCCC-----CcEEEEECCCCCceEEecCCCCEEEEEECCCC-cccccccccCCcccceEEecc
Confidence 999999988877666655444 899999999875 677887 999999999863 2211100
Q ss_pred -------ccccccccceEEEEEc-CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEcc------------
Q psy2305 152 -------LKPWFRKNIVSAIAIN-PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS------------ 211 (334)
Q Consensus 152 -------~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------------ 211 (334)
....+|...+.++.|+ |+++ .+++++.|+++++||+..++....+..|...+..+.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred cccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence 0234677889999987 7888 999999999999999988877766666655554443333
Q ss_pred --------CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305 212 --------NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN 277 (334)
Q Consensus 212 --------~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 277 (334)
++.++++++ .|+.|++||+.+ +.....+..+ ...+.+++|+|+|++||+++.+| +.+|.+.
T Consensus 320 ~~~~~~~~~~~~~~sgs-~Dg~V~lwd~~~-~~~~~~~~~~--~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHS-QHGLIQLINTYE-KDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEECSSCTTEEEEEET-TTTEEEEEETTC-TTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred eEEEccCCCCEEEEEEC-CCCEEEEEECCC-CcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 334667777 899999999997 5555555554 56799999999999999998766 6666654
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.3e-32 Score=227.48 Aligned_cols=242 Identities=14% Similarity=0.099 Sum_probs=194.7
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
..|.+++|+|++++|++++.||.|++||+.+++.. . ...|...|.+++|.| ++++++|+
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---------------~-~~~~~~~v~~~~~~~-----~~~~~~l~ 145 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI---------------Q-IAQHDAPVKTIHWIK-----APNYSCVM 145 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE---------------E-EEECSSCEEEEEEEE-----CSSCEEEE
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce---------------e-eccccCceEEEEEEe-----CCCCCEEE
Confidence 46999999999999999999999999999988764 2 234678899998865 67999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++.|+.|++||+.+++.+..+..+. .+.++.+.++ .++++. ++.+.+|+++........ ....+...
T Consensus 146 ~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~ 214 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPMMVLQLPE------RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRR---IESPLKHQ 214 (368)
T ss_dssp EEETTSEEEEECSSCSSCSEEEECSS------CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEE---CCCSCSSC
T ss_pred EccCCCcEEEEECCCCcEEEEEecCC------CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhh---ccccccCC
Confidence 99999999999999999888887644 5666666644 566555 999999999874333332 22334455
Q ss_pred eEEEEEcCCCC---cEEEEeecCCeEEEEECCCC---CceEeeccCCC------------CeEEEEEccCCcEEEeeecC
Q psy2305 161 VSAIAINPVHP---DICALGTYSKIIGLFSDSDG---RPLFFLKGHNG------------GITHLEFSSNGILLFSGARK 222 (334)
Q Consensus 161 v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~~ 222 (334)
+.++.+.++.. ..+++++.||.|++||++.. +.+..+.+|.. .|.+++|+|++++|++++ .
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~ 293 (368)
T 3mmy_A 215 HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-S 293 (368)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-T
T ss_pred CceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-c
Confidence 66666665554 13999999999999999887 55677777765 799999999999999999 8
Q ss_pred CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
||.|++||+++ +..+..+..| ...+.+++|+|+|++|++++.|+..+.|++...
T Consensus 294 dg~i~iwd~~~-~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 294 DGRFSFWDKDA-RTKLKTSEQL--DQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp TSCEEEEETTT-TEEEEECCCC--SSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred CCeEEEEECCC-CcEEEEecCC--CCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 99999999997 7777777765 678999999999999999999987666665543
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.9e-30 Score=221.69 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=188.6
Q ss_pred ceeEEEEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 3 IEEDVDEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 3 ~V~~~~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
.+.+++|+|+|++| ++++.|+.|++||+.+++.. ..+.. ...+.+++| +|++++|+
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--------------~~~~~--~~~v~~~~~-------spdg~~l~ 89 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--------------ATVPA--GSSPQGVAV-------SPDGKQVY 89 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------EEEEC--SSSEEEEEE-------CTTSSEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--------------EEEEC--CCCccceEE-------CCCCCEEE
Confidence 47899999999977 66778999999999988765 23332 236777777 77998775
Q ss_pred E-eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEE-EEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 82 C-SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI-YAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 82 ~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
+ ++.++.|++||+.+++.+..+..+. .+.+++|+|+++.| ++++ ++.|++||+.+ ++... .+..+
T Consensus 90 ~~~~~~~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~----~~~~~- 157 (391)
T 1l0q_A 90 VTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVIN----TVSVG- 157 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEE----EEECC-
T ss_pred EEECCCCEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEE----EEecC-
Confidence 5 4567999999999999888776533 68999999999988 4666 89999999986 44443 23333
Q ss_pred cceEEEEEcCCCCcEE-EEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec--CCCeEEEEEccCCC
Q psy2305 159 NIVSAIAINPVHPDIC-ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR--KDCEIICWDLRNPG 235 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~~ 235 (334)
..+.+++|+|+++ .+ ++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++. .++.|++||+++ +
T Consensus 158 ~~~~~~~~~~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~ 234 (391)
T 1l0q_A 158 RSPKGIAVTPDGT-KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-N 234 (391)
T ss_dssp SSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-T
T ss_pred CCcceEEECCCCC-EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC-C
Confidence 5579999999998 55 677889999999999988877776 5567899999999999998873 389999999987 6
Q ss_pred ccceeecccccCCceEEEEecCCCceE-EeeecCCcEEEEeCCCC
Q psy2305 236 CILHTFPRQVSTNQRVYFDLTSCSNYL-LSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~ 279 (334)
+.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+.++
T Consensus 235 ~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 235 KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 666666543 346789999999887 56678999999999987
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=230.19 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=174.9
Q ss_pred ceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee-----------------------------EEEcCccc
Q psy2305 58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK-----------------------------ATYRPYNQ 108 (334)
Q Consensus 58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-----------------------------~~~~~~~~ 108 (334)
...|.+++| +|||+++|+++.|++|+ |.+.++.+ ..+.. .+
T Consensus 15 ~~~v~sv~~-------SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~ 84 (588)
T 2j04_A 15 EDWKNNLTW-------ARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QP 84 (588)
T ss_dssp SSSSCCEEE-------CTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SC
T ss_pred hccEEEEEE-------CCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CC
Confidence 356666666 78999999999999996 44333311 11110 11
Q ss_pred cccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc-----ceEEEEEcCCCCcEEEEeecCCe
Q psy2305 109 VDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN-----IVSAIAINPVHPDICALGTYSKI 182 (334)
Q Consensus 109 ~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~ 182 (334)
...|.+++|+|+|+.|++++ ||.|++||.. + .+. .+. |.. .+.+++|+|+|+ +|++|+.||+
T Consensus 85 ---~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~--~-~l~----~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGt 152 (588)
T 2j04_A 85 ---VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN--K-MLT----NLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGE 152 (588)
T ss_dssp ---SCCEEEEEECSSSSCEEEEETTSCEEEEETT--E-EEE----ECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSE
T ss_pred ---CCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--c-eee----ecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCE
Confidence 23799999999999999988 9999999954 2 332 334 554 599999999999 9999999999
Q ss_pred EEEEECCCCCc-------eEee----ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc---ceeec-ccccC
Q psy2305 183 IGLFSDSDGRP-------LFFL----KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI---LHTFP-RQVST 247 (334)
Q Consensus 183 i~i~d~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~---~~~~~-~~~~~ 247 (334)
|++||+.+++. +.++ .+|...|.+++|+|+| +++++ .|+++++||+.. +.. ..++. .| .
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~D~tVrlWd~~~-~~~~~~~~tL~~~h--~ 226 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-SNNSVFSMTVSA-SSHQPVSRMIQNAS--R 226 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-TTCCEEEECCCS-SSSCCCEEEEECCC--S
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe-CCCeEEEEECCC-Cccccceeeecccc--c
Confidence 99999988753 5666 6778899999999999 77888 799999999986 332 23453 33 5
Q ss_pred CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
..+.+++|+ |+.||+++ ++.|++||+.++ +......+|.+.|.+++|-.+|++ ..|+++++
T Consensus 227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~------------~~~~~~~gh~~~V~~va~~~s~d~----~~La~a~e 287 (588)
T 2j04_A 227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNY------------SISSLKTGSLENFHIIPLNHEKES----TILLMSNK 287 (588)
T ss_dssp SCCCCEEEE--TTEEEEEC-SSEEEEEETTTT------------EEEEEECSCCSCCCEEEETTCSSC----EEEEECSS
T ss_pred CcEEEEEEE--CCEEEEEe-CCeEEEEECCCC------------eEEEEEcCCCceEEEEEeeeCCCC----CEEEEEcC
Confidence 678889998 68898887 699999999986 342333379999999998556888 89999999
Q ss_pred cee
Q psy2305 328 QIT 330 (334)
Q Consensus 328 d~~ 330 (334)
||+
T Consensus 288 dG~ 290 (588)
T 2j04_A 288 TSY 290 (588)
T ss_dssp CEE
T ss_pred CCC
Confidence 998
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=4.8e-31 Score=213.92 Aligned_cols=185 Identities=12% Similarity=0.125 Sum_probs=143.7
Q ss_pred CCcEEEEee--CCCcEEEEeC-CCCeeeEEEcCccccccccceeEEEEcC---CCCEEEEee-CCcEEEEEcCCCCCeee
Q psy2305 76 FTSYFLCSS--MYAPIHLWDS-VGGEIKATYRPYNQVDEVTHAYSLAFSL---DGNKIYAGF-LSEVKIFSTDRPGRECV 148 (334)
Q Consensus 76 ~~~~l~~~~--~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~-d~~i~i~d~~~~~~~~~ 148 (334)
+++++.+++ .|+.|++|++ .+|+.+..+..+.. .+..++|+| ++..|++++ |++|++||+.+ ++.+.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~-----~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~ 217 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP-----EETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLK 217 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC-----SSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC-----ceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEE
Confidence 566666643 6999999999 45887777776655 788999999 779999988 99999999998 66666
Q ss_pred eeccccccc---ccceEEEEEcCCCCcEE------------EEeecCCeEEEEECCCCCceEee-----ccCCCCeEEEE
Q psy2305 149 SRNLKPWFR---KNIVSAIAINPVHPDIC------------ALGTYSKIIGLFSDSDGRPLFFL-----KGHNGGITHLE 208 (334)
Q Consensus 149 ~~~~~~~~~---~~~v~~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~ 208 (334)
.+.+| ...+.+++|+|+|. ++ ++|+.|++|++||..+++.+..+ .+|...+.+..
T Consensus 218 ----tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~ 292 (356)
T 2w18_A 218 ----KMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD 292 (356)
T ss_dssp ----EEECCC---CCCEEEEEEETTE-EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred ----EEcCCCcceeeeEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence 34443 34677889999998 65 56888999999999999887665 36666655444
Q ss_pred EccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305 209 FSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276 (334)
Q Consensus 209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 276 (334)
++ +.++++++ .|++|+|||+.+ ++.+.++.+|.. ..+..++|+|+|++|++|+.|++|+|||+
T Consensus 293 ~s--g~~lASgS-~DgTIkIWDl~t-Gk~l~tL~gH~~-~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 293 VK--DHCAAAIL-TSGTIAIWDLLL-GQCTALLPPVSD-QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EE--TTEEEEEE-TTSCEEEEETTT-CSEEEEECCC---CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cC--CCEEEEEc-CCCcEEEEECCC-CcEEEEecCCCC-CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 44 78999999 899999999998 888888887632 22335789999999999999999999996
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=2.1e-29 Score=218.09 Aligned_cols=237 Identities=13% Similarity=0.128 Sum_probs=192.7
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
..|.+++|+|+++++++++.|+.|++||+.+++.. ..+. .+...+.+++| +|+++.++
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~--------------~~~~-~~~~~~~~~~~-------~~~~~~l~ 227 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK--------------ATVD-LTGKWSKILLY-------DPIRDLVY 227 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE--------------EEEE-CSSSSEEEEEE-------ETTTTEEE
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE--------------EEEc-CCCCCeeEEEE-------cCCCCEEE
Confidence 36889999999999999999999999999987765 2333 34567777777 67888775
Q ss_pred -EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---------CCcEEEEEcCCCCCeeeeec
Q psy2305 82 -CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---------LSEVKIFSTDRPGRECVSRN 151 (334)
Q Consensus 82 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------d~~i~i~d~~~~~~~~~~~~ 151 (334)
+++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ |+.|++||+.+ ++...
T Consensus 228 ~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~--- 297 (433)
T 3bws_A 228 CSNWISEDISVIDRKTKLEIRKTDKIG------LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-EKLID--- 297 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEECCCCS------EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEE---
T ss_pred EEecCCCcEEEEECCCCcEEEEecCCC------CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-CcEEe---
Confidence 45579999999999998887776533 689999999999888764 67999999986 44333
Q ss_pred ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC---------
Q psy2305 152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK--------- 222 (334)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------- 222 (334)
...+...+.+++|+|+++.++++++.++.|++||+++++.+..+. +...+.+++|+|+|++|++++ .
T Consensus 298 --~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~-~~~~~~~~~~ 373 (433)
T 3bws_A 298 --TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSC-RGPNHPTEGY 373 (433)
T ss_dssp --EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEE-CCCCCTTTCT
T ss_pred --eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEe-cCCCcccccc
Confidence 235566889999999998456777899999999999888887776 677899999999999998887 4
Q ss_pred ------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec-CCcEEEEeCCC
Q psy2305 223 ------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNT 278 (334)
Q Consensus 223 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~ 278 (334)
||.|++||+.+ ++.+..+.. ...+..++|+|+|++|++++. |+.|++|+++.
T Consensus 374 ~~~g~~dg~v~~~d~~~-~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTT-DTVKEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTT-TEEEEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCC-CcEEEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 46999999987 666666654 346788999999999988775 99999999864
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.2e-29 Score=213.76 Aligned_cols=227 Identities=13% Similarity=0.092 Sum_probs=177.8
Q ss_pred eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CC
Q psy2305 56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LS 133 (334)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~ 133 (334)
.|...|.+++| +|++++|++|+.++ +++|++.+++....... . .+..+++.++++.++ +++ |+
T Consensus 17 ~h~~~V~~v~f-------s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 17 HVSNPVTDYEF-------NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--R-----HLSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp --CCCCCEEEE-------CTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--S-----CCCEEEECTTSSEEEEECSSTT
T ss_pred cCCCceEEEEE-------CCCCCEEEEEcCCE-EEEEecCCcceeeeeec--C-----CeEEEEEcCCCCEEEEEECCcc
Confidence 46678888777 77999999998775 78999988766554332 1 467888999988885 455 89
Q ss_pred cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccC
Q psy2305 134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSN 212 (334)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~ 212 (334)
.|++||+.+ ++.+.. + .+...|.+++++++. ++++ .++.|++||+.++ +.+..+.. +...+++++
T Consensus 82 ~v~iWd~~~-~~~~~~----~-~~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 82 VVHIWDDVK-KQDVSR----I-KVDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp EEEEEETTT-TEEEEE----E-ECSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred EEEEEECCC-CcEEEE----E-ECCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence 999999986 555442 3 366789999999874 4433 4789999999988 77776664 444566777
Q ss_pred CcEEEe--eecCCCeEEEEEccCCC--------------cc-ceeecccccCCceEEEEecCCCceEEeeecCCc-EEEE
Q psy2305 213 GILLFS--GARKDCEIICWDLRNPG--------------CI-LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD-LSIW 274 (334)
Q Consensus 213 ~~~l~~--~~~~d~~i~iwd~~~~~--------------~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iw 274 (334)
.++++ ++ .||.|++||++... .+ +..+.+| ...+.+++|+|+|++|++++.|++ |++|
T Consensus 148 -~~la~~sg~-~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 148 -GLLVYSNEF-NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp -TEEEEEESS-CTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred -cEEEEeCCC-cCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 56665 56 89999999998622 01 5666666 678999999999999999999998 9999
Q ss_pred eCCCCCCCCCCCccccccccceec-c-cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 275 NVNTSNLPSSPYEESVQEPLYKFS-A-HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|+.++ +.+..+. + |...|.+++| +|++ ++|++++.|+++++
T Consensus 224 d~~~~------------~~~~~~~~g~h~~~v~~~~~--s~~~----~~l~s~s~d~~v~i 266 (355)
T 3vu4_A 224 KTEDG------------VLVREFRRGLDRADVVDMKW--STDG----SKLAVVSDKWTLHV 266 (355)
T ss_dssp ETTTC------------CEEEEEECTTCCSCEEEEEE--CTTS----CEEEEEETTCEEEE
T ss_pred ECCCC------------cEEEEEEcCCCCCcEEEEEE--CCCC----CEEEEEECCCEEEE
Confidence 99998 6777887 5 8999999999 9999 99999999999875
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.4e-28 Score=217.56 Aligned_cols=275 Identities=12% Similarity=0.022 Sum_probs=208.0
Q ss_pred EEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCC
Q psy2305 8 DEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYA 87 (334)
Q Consensus 8 ~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~ 87 (334)
+|+|++..+++++.|++|.+||..+++.. ..+..++. +..+++ +|++++|++++.|+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~--------------~~i~~g~~--~~~v~~-------spdg~~l~v~~~d~ 200 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV--------------KVIDTGYA--VHISRM-------SASGRYLLVIGRDA 200 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE--------------EEEECSTT--EEEEEE-------CTTSCEEEEEETTS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE--------------EEEecCcc--cceEEE-------CCCCCEEEEECCCC
Confidence 47899999999999999999999998876 34443332 555444 88999999999999
Q ss_pred cEEEEeC--CCCeeeEEEcCccccccccceeEEEEcC----CCCEEEEee--CCcEEEEEcCCCCCeeeeecccc-----
Q psy2305 88 PIHLWDS--VGGEIKATYRPYNQVDEVTHAYSLAFSL----DGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKP----- 154 (334)
Q Consensus 88 ~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~----- 154 (334)
.|.+||+ .+++.+..+.... .+..++|+| ||++|++++ +++|.+||..+ .+.+......-
T Consensus 201 ~V~v~D~~~~t~~~~~~i~~g~------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 201 RIDMIDLWAKEPTKVAEIKIGI------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EEEEEETTSSSCEEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSS
T ss_pred eEEEEECcCCCCcEEEEEecCC------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccceeecccCcccCc
Confidence 9999999 8888888776422 679999999 999999775 89999999986 55555322100
Q ss_pred -cccc-cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305 155 -WFRK-NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230 (334)
Q Consensus 155 -~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd 230 (334)
.-|. ..+..+.++|+++.++++...++.|.+||+.+.+.+. .+. +...+..+.|+|+|++|++++..+++|.+||
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 0022 3788999999888577788889999999998876544 343 5566788999999998877663689999999
Q ss_pred ccCCCccceeecccc--cCCceEEEEecCC-CceEEeee-cCCcEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305 231 LRNPGCILHTFPRQV--STNQRVYFDLTSC-SNYLLSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~--~~~~~~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 306 (334)
..+ ++++..+.... +......+ ++|+ +.+++++. .|++|.+||+.+... .+..++.++.+..|.+.+..
T Consensus 353 ~~t-g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~-----~~~~~~~v~~l~~~g~~~~~ 425 (543)
T 1nir_A 353 SKD-RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH-----PQYAWKKVAELQGQGGGSLF 425 (543)
T ss_dssp TTT-TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC-----TTTBTSEEEEEECSCSCCCC
T ss_pred CCC-CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC-----chhcCeEEEEEEcCCCCceE
Confidence 998 77666665321 12223334 4677 66667665 589999999988321 01113788899998888899
Q ss_pred eeeccCCCcccceeeEEeee
Q psy2305 307 VRWKHHKFERDLLVADATCS 326 (334)
Q Consensus 307 ~~~~~s~~~~~~~~~l~t~~ 326 (334)
+++ +|++ ++|++++
T Consensus 426 v~~--~pdg----~~l~v~~ 439 (543)
T 1nir_A 426 IKT--HPKS----SHLYVDT 439 (543)
T ss_dssp EEC--CTTC----CEEEECC
T ss_pred EEc--CCCC----CcEEEec
Confidence 999 9999 9999987
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=2.5e-29 Score=215.97 Aligned_cols=275 Identities=12% Similarity=0.010 Sum_probs=194.1
Q ss_pred eeEEEEcCCCc-EEEEee----CCC----eEEEEEC--CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce
Q psy2305 4 EEDVDEAPDGT-CLLTNS----NDN----HLRTFDL--PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS 72 (334)
Q Consensus 4 V~~~~~sp~~~-~l~~~~----~d~----~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 72 (334)
|...+|++.|. ++++|+ .+| .++|||+ .+++... ...+.. +...+..+++.+....
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~d~~ 131 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA------------QNSYKV-NKQWLRYAGHTASDEV 131 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE------------EEEEEE-CGGGHHHHHHHHHHHH
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe------------eeEEEc-ChhHHHHHHHHHHHHH
Confidence 45566777765 566776 467 8999999 8777541 112332 3333433333221000
Q ss_pred e-------cCCCcEEEEeeCC------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC---cE
Q psy2305 73 I-------DGFTSYFLCSSMY------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS---EV 135 (334)
Q Consensus 73 ~-------s~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~---~i 135 (334)
+ .+.+..++.++.+ +.|++||+.. .....+..+.. .+.+++|+|||+.|++++ ++ .|
T Consensus 132 ~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~~~~~~i 205 (415)
T 2hqs_A 132 FEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESGRSAL 205 (415)
T ss_dssp HHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESS-----CEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred HHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCC-----cceeeEEcCCCCEEEEEEecCCCcEE
Confidence 0 1125556665543 7999999974 44555554433 899999999999999876 54 99
Q ss_pred EEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEE-EeecCC--eEEEEECCCCCceEeeccCCCCeEEEEEccC
Q psy2305 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA-LGTYSK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSN 212 (334)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 212 (334)
++||+.+ ++.. .+..|...+.+++|+|+|+ .|+ +++.++ .|++||+++++. ..+..|...+.+++|+|+
T Consensus 206 ~~~d~~t-g~~~-----~l~~~~~~~~~~~~spdg~-~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 206 VIQTLAN-GAVR-----QVASFPRHNGAPAFSPDGS-KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp EEEETTT-CCEE-----EEECCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT
T ss_pred EEEECCC-CcEE-----EeecCCCcccCEEEcCCCC-EEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC
Confidence 9999986 4432 3456778899999999999 666 666555 499999988765 567778889999999999
Q ss_pred CcEEEeeecCCC--eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC---CcEEEEeCCCCCCCCCCCc
Q psy2305 213 GILLFSGARKDC--EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN---GDLSIWNVNTSNLPSSPYE 287 (334)
Q Consensus 213 ~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~ 287 (334)
|++|++++..++ .|++||+.. +. ...+..+ ...+..++|+|+|++|++++.+ ..|++||+.++
T Consensus 278 g~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~-------- 345 (415)
T 2hqs_A 278 SQNLAFTSDQAGRPQVYKVNING-GA-PQRITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-------- 345 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTS-SC-CEECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--------
T ss_pred CCEEEEEECCCCCcEEEEEECCC-CC-EEEEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC--------
Confidence 999998872245 677778875 33 3334333 4567789999999999988764 58999999986
Q ss_pred cccccccceecccccccceeeeccCCCcccceeeEEeeecce
Q psy2305 288 ESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI 329 (334)
Q Consensus 288 ~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~ 329 (334)
+. ..+..+. .+..++| +|++ ++|++++.|+
T Consensus 346 ----~~-~~l~~~~-~~~~~~~--spdg----~~l~~~s~~~ 375 (415)
T 2hqs_A 346 ----GV-QVLSSTF-LDETPSL--APNG----TMVIYSSSQG 375 (415)
T ss_dssp ----CE-EECCCSS-SCEEEEE--CTTS----SEEEEEEEET
T ss_pred ----CE-EEecCCC-CcCCeEE--cCCC----CEEEEEEcCC
Confidence 33 3455554 7899999 9999 9999988776
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.1e-27 Score=205.77 Aligned_cols=246 Identities=13% Similarity=0.108 Sum_probs=189.5
Q ss_pred CcEEEEeeCC------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC
Q psy2305 13 GTCLLTNSND------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY 86 (334)
Q Consensus 13 ~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d 86 (334)
+..++.++.+ +.|++||+...... .+.. +...+.+++| +|+|+.|++++.+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~---------------~l~~-~~~~v~~~~~-------Spdg~~la~~s~~ 199 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQF---------------VVHR-SPQPLMSPAW-------SPDGSKLAYVTFE 199 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCE---------------EEEE-ESSCEEEEEE-------CTTSSEEEEEECT
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCE---------------EEeC-CCCcceeeEE-------cCCCCEEEEEEec
Confidence 5666666554 79999999865432 4443 5577888877 7799999999887
Q ss_pred C---cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CC--cEEEEEcCCCCCeeeeeccccccccc
Q psy2305 87 A---PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LS--EVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 87 ~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
+ .|++||+.+++... +..+.. .+.+++|+|||+.|+ +++ ++ .|++||+.+ ++. . .+..|..
T Consensus 200 ~~~~~i~~~d~~tg~~~~-l~~~~~-----~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~~-~----~l~~~~~ 267 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVRQ-VASFPR-----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-R----QVTDGRS 267 (415)
T ss_dssp TSSCEEEEEETTTCCEEE-EECCSS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-E----ECCCCSS
T ss_pred CCCcEEEEEECCCCcEEE-eecCCC-----cccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CCE-E----eCcCCCC
Confidence 5 89999999887754 433332 789999999999888 554 44 499999985 333 3 4567788
Q ss_pred ceEEEEEcCCCCcEEEEeec-CC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC--CCeEEEEEccCC
Q psy2305 160 IVSAIAINPVHPDICALGTY-SK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK--DCEIICWDLRNP 234 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i~iwd~~~~ 234 (334)
.+.+++|+|+|+ .|++++. ++ .|++||+.+++. ..+..+...+.+++|+|+|++|++++.. +..|++||+.+
T Consensus 268 ~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~- 344 (415)
T 2hqs_A 268 NNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT- 344 (415)
T ss_dssp CEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-
T ss_pred cccceEECCCCC-EEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-
Confidence 999999999999 7877765 44 688889887764 4455577789999999999999988732 25899999986
Q ss_pred CccceeecccccCCceEEEEecCCCceEEeeecCC---cEEEEeCCCCCCCCCCCccccccccceecccccccceeeecc
Q psy2305 235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG---DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKH 311 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (334)
++. ..+..+ ..+..++|+|+|++|++++.++ .|++||+.. .....+..|.+.|.+++|
T Consensus 345 ~~~-~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-------------~~~~~l~~~~~~v~~~~~-- 405 (415)
T 2hqs_A 345 GGV-QVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-------------RFKARLPATDGQVKFPAW-- 405 (415)
T ss_dssp CCE-EECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-------------CCEEECCCSSSEEEEEEE--
T ss_pred CCE-EEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-------------CcEEEeeCCCCCCcCCcc--
Confidence 443 344433 2678899999999999888776 799999986 456778889999999999
Q ss_pred CCCc
Q psy2305 312 HKFE 315 (334)
Q Consensus 312 s~~~ 315 (334)
+|..
T Consensus 406 ~~~~ 409 (415)
T 2hqs_A 406 SPYL 409 (415)
T ss_dssp CCCC
T ss_pred cccc
Confidence 9865
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.3e-27 Score=211.38 Aligned_cols=281 Identities=10% Similarity=0.027 Sum_probs=204.8
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEEC--CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC----CC
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDL--PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG----FT 77 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~----~~ 77 (334)
+.+++|+|||++|++++.|++|++||+ .+++.. ..+. .+..... ++|+| +|
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~--------------~~i~--~g~~p~~-------va~sp~~~~dg 237 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--------------AEIK--IGIEARS-------VESSKFKGYED 237 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--------------EEEE--CCSEEEE-------EEECCSTTCTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE--------------EEEe--cCCCcce-------EEeCCCcCCCC
Confidence 678999999999999999999999999 665543 2333 2233444 45589 99
Q ss_pred cEEEEeeC-CCcEEEEeCCCCeeeEEEcCcccc------ccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeee
Q psy2305 78 SYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQV------DEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECV 148 (334)
Q Consensus 78 ~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~ 148 (334)
++|++++. +++|.+||..+++.+..+...... .....+..+.++|++..++++ . ++.|.+||+.+ .+.+.
T Consensus 238 ~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~-~~~l~ 316 (543)
T 1nir_A 238 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-IDNLT 316 (543)
T ss_dssp TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT-SSSCE
T ss_pred CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC-CCcce
Confidence 99998874 899999999999998887653210 001168899999988776654 4 89999999986 33322
Q ss_pred eecccccccccceEEEEEcCCCCcEEE-EeecCCeEEEEECCCCCceEeecc----CCCCeEEEEEccC-CcEEEeeecC
Q psy2305 149 SRNLKPWFRKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSDGRPLFFLKG----HNGGITHLEFSSN-GILLFSGARK 222 (334)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~~~ 222 (334)
. ....+...+.++.|+|+|+ +++ ++..+++|.+||+.+++++..+.. |.+....+ ++|+ +..++++...
T Consensus 317 ~---~~i~~~~~~~~~~~spdg~-~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 317 V---TSIGAAPFLHDGGWDSSHR-YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG 391 (543)
T ss_dssp E---EEEECCSSCCCEEECTTSC-EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred e---EEeccCcCccCceECCCCC-EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC
Confidence 1 1223556788999999999 655 455689999999999998888764 55444343 4777 5555655424
Q ss_pred CCeEEEEEccCC------CccceeecccccCCceEEEEecCCCceEEeee-------cCCcEEEEeCCCCCCCCCCCccc
Q psy2305 223 DCEIICWDLRNP------GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-------TNGDLSIWNVNTSNLPSSPYEES 289 (334)
Q Consensus 223 d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~ 289 (334)
|++|.+||+.+. .+.+.++..+ ...+..++++|+|++|++++ .+++|.+||+.+++
T Consensus 392 d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~--------- 460 (543)
T 1nir_A 392 DGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD--------- 460 (543)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT---------
T ss_pred CceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC---------
Confidence 799999999862 3556667655 34556688999999999987 36799999999984
Q ss_pred ccccc-cee--------cccccccceeeeccCCCcccceeeEEeee-----cceeeee
Q psy2305 290 VQEPL-YKF--------SAHQDCTNGVRWKHHKFERDLLVADATCS-----GQITNVK 333 (334)
Q Consensus 290 ~~~~~-~~~--------~~~~~~i~~~~~~~s~~~~~~~~~l~t~~-----~d~~i~~ 333 (334)
.. ..+ ..+...+..+.| +|+| +.|+++. .|+.|++
T Consensus 461 ---~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~g----~~~~~s~~~~~~~~~~i~v 509 (543)
T 1nir_A 461 ---AKYQVLPIAEWADLGEGAKRVVQPEY--NKRG----DEVWFSVWNGKNDSSALVV 509 (543)
T ss_dssp ---SCCEEECHHHHHCCCSSCCEEEEEEE--CSSS----SEEEEEEECCTTSCCEEEE
T ss_pred ---CCeEEeechhhcccCCCCCceEeccC--CCCC----CEEEEEeecCCCCCCeEEE
Confidence 22 222 345668999999 9999 8877653 3677764
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1.1e-28 Score=227.75 Aligned_cols=292 Identities=11% Similarity=-0.001 Sum_probs=198.2
Q ss_pred ceeEEEEcCCCcEEEEeeC-CC-----eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeecee--EEEEE--Eecccce
Q psy2305 3 IEEDVDEAPDGTCLLTNSN-DN-----HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGI--IYDYV--WYPKTSS 72 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~-d~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~ 72 (334)
.|.+++|||||++|++++. |+ .|++||+.+++........... +... .+....... ...+. .....++
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-PGTE-TLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------CCEESCCCE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-cccc-cccchhhhhhhhhhhccccCcceeE
Confidence 5889999999999999998 88 9999999988765322111000 0000 000000000 00000 1123456
Q ss_pred ecCCCcEEEEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee
Q psy2305 73 IDGFTSYFLCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 73 ~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 150 (334)
|||||++|++++. +.|.+||+.++. ....+..+.. .+..++|+|||++|+.++++.|++||+.+ +....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~SPDG~~la~~~~~~i~~~d~~~-g~~~~-- 186 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG-----FATDAKLSPKGGFVSFIRGRNLWVIDLAS-GRQMQ-- 186 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSS-----CEEEEEECTTSSEEEEEETTEEEEEETTT-TEEEE--
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCc-----ccccccCCCCCCEEEEEeCCcEEEEecCC-CCEEE--
Confidence 6899999999886 899999998872 2333443322 78999999999999998888999999985 43332
Q ss_pred ccccccccc----------------ceEEEEEcCCCCcEEEEeecCC---------------------------------
Q psy2305 151 NLKPWFRKN----------------IVSAIAINPVHPDICALGTYSK--------------------------------- 181 (334)
Q Consensus 151 ~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg--------------------------------- 181 (334)
....+.. .+..++|+|||+ .|++++.|+
T Consensus 187 --~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 187 --LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp --CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred --eccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 1222222 147899999999 888887665
Q ss_pred eEEEEECCC-CCceEeec--cCCCCeEEEEEccCCcEEEeeec----CCCeEEEEEccCCCccceeecccccCC---ceE
Q psy2305 182 IIGLFSDSD-GRPLFFLK--GHNGGITHLEFSSNGILLFSGAR----KDCEIICWDLRNPGCILHTFPRQVSTN---QRV 251 (334)
Q Consensus 182 ~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~ 251 (334)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|++||+.+ ++....+..+. .. .+.
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~-~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETS-PTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEEC-SSCCCCCS
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCC-CCcCCcCC
Confidence 899999988 77655443 36778999999 99999987651 256799999987 55544444332 11 234
Q ss_pred EEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccccccee-eeccCCCcccceeeEEe-eecce
Q psy2305 252 YFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV-RWKHHKFERDLLVADAT-CSGQI 329 (334)
Q Consensus 252 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~s~~~~~~~~~l~t-~~~d~ 329 (334)
.++|+|||+++++++.||.++||.+.... . ...+..|...+..+ .| +|++ +.|+. ++.|+
T Consensus 341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~-----------~-~~~l~~~~~~v~~~~~~--s~dg----~~l~~~~~~~~ 402 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQHLYRIDSKG-----------K-AAALTHGNWSVDELLAV--DEKA----GLAYFRAGIES 402 (741)
T ss_dssp CCEECTTSCEEEEECTTSSCEEEEECSSS-----------C-EEESCCSSSCEEEEEEE--ETTT----TEEEEEECSSC
T ss_pred ceEECCCCeEEEEecCCCccEEEEEcCCC-----------C-eeeeeecceEEEeEeEE--eCCC----CEEEEEEeCCC
Confidence 67899999999999999988888776321 4 55666677778777 59 9999 76654 44444
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=9.2e-28 Score=196.69 Aligned_cols=260 Identities=11% Similarity=0.090 Sum_probs=192.5
Q ss_pred EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC-
Q psy2305 18 TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG- 96 (334)
Q Consensus 18 ~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~- 96 (334)
.++.|+.|++||+.+++.. .+. .+...+.+++| +|++++|++++ ++.|.+||+.+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~---------------~~~-~~~~~v~~~~~-------spdg~~l~~~~-~~~i~~~d~~~~ 72 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR---------------VVW-QTPELFEAPNW-------SPDGKYLLLNS-EGLLYRLSLAGD 72 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE---------------EEE-EESSCCEEEEE-------CTTSSEEEEEE-TTEEEEEESSSC
T ss_pred CCCcceeEEEEeCCCCcee---------------eec-cCCcceEeeEE-------CCCCCEEEEEc-CCeEEEEeCCCC
Confidence 3467899999999988754 233 34677888777 77999999886 78999999988
Q ss_pred CeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcE
Q psy2305 97 GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDI 173 (334)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (334)
++.......+. . ..+.+++|+|++++|+++. ++...+|.++..+.... .+..+ ..+..++|+|+++ .
T Consensus 73 ~~~~~~~~~~~-~---~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~-~~~~~~~~spdg~-~ 142 (297)
T 2ojh_A 73 PSPEKVDTGFA-T---ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR----LMTKN-LPSYWHGWSPDGK-S 142 (297)
T ss_dssp CSCEECCCTTC-C---CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE----ECCSS-SSEEEEEECTTSS-E
T ss_pred CCceEeccccc-c---ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE----EeecC-CCccceEECCCCC-E
Confidence 77665544321 1 1688999999999999775 34666666653233333 22333 3488999999999 6
Q ss_pred EE-EeecCCeEEEEECCC-CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceE
Q psy2305 174 CA-LGTYSKIIGLFSDSD-GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV 251 (334)
Q Consensus 174 l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 251 (334)
|+ ++..++.+.+|+++. +.....+..+...+.+++|+|+|++|++++..++.+++|++...+.....+..+ ...+.
T Consensus 143 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~ 220 (297)
T 2ojh_A 143 FTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--AYGDW 220 (297)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC--SEEEE
T ss_pred EEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC--CcccC
Confidence 65 788899999998642 344566677888999999999999888766248999999997435555555544 45677
Q ss_pred EEEecCCCceEEeeecC-----------CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305 252 YFDLTSCSNYLLSGNTN-----------GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV 320 (334)
Q Consensus 252 ~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~ 320 (334)
.++|+|+|++|++++.+ +.|++||+.+++. ..+..+.+|...+..++| +|++ +
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~~~~~~~~~~~~~~~~~~--spdg----~ 284 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----------ETLFDLFGGQGTMNSPNW--SPDG----D 284 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----------EEEEEEEESTTTSCSCCB--CTTS----S
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----------eeeeccCCCCcccccceE--CCCC----C
Confidence 89999999999888765 5699999988732 234455577888999999 9999 9
Q ss_pred eEEeeecce
Q psy2305 321 ADATCSGQI 329 (334)
Q Consensus 321 ~l~t~~~d~ 329 (334)
+|++++.|.
T Consensus 285 ~l~~~~~~~ 293 (297)
T 2ojh_A 285 EFAYVRYFP 293 (297)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 888887764
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.97 E-value=5.1e-27 Score=197.50 Aligned_cols=273 Identities=12% Similarity=0.053 Sum_probs=203.3
Q ss_pred ceeEEEEcCCCcEEEEeeC-------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 3 IEEDVDEAPDGTCLLTNSN-------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
.+..++|+|+|+++++++. ++.|.+||..+++.. ..+.. ... |..++++|
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~--------------~~~~~--~~~-------~~~~~~s~ 98 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT--------------QAIHN--DLK-------PFGATINN 98 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE--------------EEEEE--SSC-------CCSEEEET
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE--------------EEEec--CCC-------cceEEECC
Confidence 4678999999998888773 568999999988765 22222 122 34455688
Q ss_pred CCcEEE-EeeCCCcEEEEeCCCCeeeEEEcCccccc----cccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCee
Q psy2305 76 FTSYFL-CSSMYAPIHLWDSVGGEIKATYRPYNQVD----EVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGREC 147 (334)
Q Consensus 76 ~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~ 147 (334)
++++++ +...++.|.+||..+++.+..+....... .+..+..++|+|++++++++. ++.|.+||+.+ ++..
T Consensus 99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-~~~~ 177 (353)
T 3vgz_A 99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-IKLK 177 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-TEEE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-CceE
Confidence 998655 45557899999999999887776533211 011368899999999887553 68899999986 4444
Q ss_pred eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc----CCCCeEEEEEccCCcEEEeeecCC
Q psy2305 148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG----HNGGITHLEFSSNGILLFSGARKD 223 (334)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~d 223 (334)
. .+..+...+.+++|+|+++ .+++++.++.|.+||+.+++....+.. +...+..++|+|+|++|++++..+
T Consensus 178 ~----~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 178 T----AIQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp E----EECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred E----EecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence 4 2333455578899999999 888888999999999999988777653 455688899999999888777345
Q ss_pred CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305 224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302 (334)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (334)
+.|.+||+.+ ++.+..+.... ...++|+|+|+++++++ .++.|.+||+.++ +.+..+... .
T Consensus 253 ~~v~~~d~~~-~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~-~ 314 (353)
T 3vgz_A 253 AEVLVVDTRN-GNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY------------KVVKTFDTP-T 314 (353)
T ss_dssp SEEEEEETTT-CCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT------------EEEEEEECC-S
T ss_pred CEEEEEECCC-CcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC------------eEEEEEecC-C
Confidence 9999999987 66666555321 24578999999766555 6899999999987 555555543 4
Q ss_pred ccceeeeccCCCcccceeeEEeeecc
Q psy2305 303 CTNGVRWKHHKFERDLLVADATCSGQ 328 (334)
Q Consensus 303 ~i~~~~~~~s~~~~~~~~~l~t~~~d 328 (334)
.+..++| +|++ ++|+++..+
T Consensus 315 ~~~~~~~--s~dg----~~l~v~~~~ 334 (353)
T 3vgz_A 315 HPNSLAL--SADG----KTLYVSVKQ 334 (353)
T ss_dssp EEEEEEE--CTTS----CEEEEEEEC
T ss_pred CCCeEEE--cCCC----CEEEEEEcc
Confidence 6789999 9999 877766655
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=9.6e-26 Score=188.13 Aligned_cols=273 Identities=11% Similarity=0.004 Sum_probs=183.4
Q ss_pred EEEcCCCcE-EEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305 7 VDEAPDGTC-LLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM 85 (334)
Q Consensus 7 ~~~sp~~~~-l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~ 85 (334)
..|.+++.+ +++++.++.|++||..+++.. ..+..+ .... .++| +|+++++++++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~-~~~~-~~~~-------s~dg~~l~~~~~ 59 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL--------------NQITLG-YDFV-DTAI-------TSDCSNVVVTSD 59 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE--------------EEEECC-CCEE-EEEE-------CSSSCEEEEEES
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee--------------eeEEcc-CCcc-eEEE-------cCCCCEEEEEeC
Confidence 346666554 677778999999999988865 233322 2333 5555 889987666655
Q ss_pred -CCcEEEEeCCCCee-eEEEcCccccccccceeEEEEcCCCCEEEEee-C-C--cEEEEEcCCCCCeeeeeccccccccc
Q psy2305 86 -YAPIHLWDSVGGEI-KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-S--EVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 86 -d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++.|.+||+.+++. ...+..... +..+++|+|++++|+++. + + .|.+||+.+ ++.... +. ...
T Consensus 60 ~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~-~~~~~~----~~-~~~ 128 (331)
T 3u4y_A 60 FCQTLVQIETQLEPPKVVAIQEGQS-----SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK-NKFIST----IP-IPY 128 (331)
T ss_dssp TTCEEEEEECSSSSCEEEEEEECSS-----CCCCEEECTTSSEEEECCCSSSSCEEEEEETTT-TEEEEE----EE-CCT
T ss_pred CCCeEEEEECCCCceeEEecccCCC-----CccceEECCCCCEEEEecCCCCcccEEEEECCC-CCeEEE----EE-CCC
Confidence 88999999999887 555554332 334499999999999665 3 3 899999986 444432 22 234
Q ss_pred ceEEEEEcCCCCcEEEEeecCCe-EEEEECCCCCceE----eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305 160 IVSAIAINPVHPDICALGTYSKI-IGLFSDSDGRPLF----FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP 234 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~ 234 (334)
...+++|+|+|+.++++...++. |.+|++.....+. ...........++|+|+|++|++++..++.|++||+.+
T Consensus 129 ~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~- 207 (331)
T 3u4y_A 129 DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN- 207 (331)
T ss_dssp TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-
T ss_pred CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-
Confidence 56899999999844455555577 9999987644331 11233456889999999997766653689999999987
Q ss_pred Ccc---ceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCCCCCCCCCccccccccceeccc----ccc---
Q psy2305 235 GCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH----QDC--- 303 (334)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--- 303 (334)
++. +..+.. ...+..++|+|+|++|++++ .++.|.+||+.+++. +.+..+..+ ...
T Consensus 208 ~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~~~~~ 274 (331)
T 3u4y_A 208 PENITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL----------SFVKSFGHGLLIDPRPLFG 274 (331)
T ss_dssp TTSCEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE----------EEEEEEECCCCCCCGGGTT
T ss_pred CcccceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce----------eeecccccccccCCCCccc
Confidence 555 444443 34556788999999776554 578899999998732 112222211 222
Q ss_pred cceeeeccCCCcccceeeEEeeec-ceeeee
Q psy2305 304 TNGVRWKHHKFERDLLVADATCSG-QITNVK 333 (334)
Q Consensus 304 i~~~~~~~s~~~~~~~~~l~t~~~-d~~i~~ 333 (334)
...++| +|++ ++|++++. ++.+.+
T Consensus 275 ~~~~~~--spdg----~~l~v~~~~~~~v~v 299 (331)
T 3u4y_A 275 ANQMAL--NKTE----TKLFISANISRELKV 299 (331)
T ss_dssp CCCEEE--CTTS----SEEEEEETTTTEEEE
T ss_pred ccceEE--CCCC----CEEEEecCCCCcEEE
Confidence 245899 9999 88766554 556643
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=8.7e-26 Score=188.40 Aligned_cols=245 Identities=12% Similarity=0.124 Sum_probs=173.1
Q ss_pred ceeEEEEcCCCcEEEEeeC-CCeEEEEECCCCCc-eeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSN-DNHLRTFDLPSELH-CKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
.+ +++|+|+|++|++++. ++.|++||..+++. . ..+.. +..+..+ ++++|++++|
T Consensus 42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~--------------~~~~~-~~~~~~~-------~~~s~dg~~l 98 (331)
T 3u4y_A 42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV--------------VAIQE-GQSSMAD-------VDITPDDQFA 98 (331)
T ss_dssp EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE--------------EEEEE-CSSCCCC-------EEECTTSSEE
T ss_pred cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE--------------Eeccc-CCCCccc-------eEECCCCCEE
Confidence 35 8999999997776665 88999999998875 3 22222 2222222 4558899999
Q ss_pred EEeeCCC---cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCc-EEEEEcCCCCCeeeeecccc
Q psy2305 81 LCSSMYA---PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSE-VKIFSTDRPGRECVSRNLKP 154 (334)
Q Consensus 81 ~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~-i~i~d~~~~~~~~~~~~~~~ 154 (334)
+++..++ .|.+||+.+++.+..+.... .+.+++|+|+|++|+++ . ++. +.+|++...+...... ...
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~ 171 (331)
T 3u4y_A 99 VTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEF 171 (331)
T ss_dssp EECCCSSSSCEEEEEETTTTEEEEEEECCT------TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEE
T ss_pred EEecCCCCcccEEEEECCCCCeEEEEECCC------CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Ccc
Confidence 8655553 89999999999887776433 56899999999877655 4 578 9999998644332211 012
Q ss_pred cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc---eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305 155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP---LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~ 231 (334)
.........++|+|+|+.+++++..++.|.+||+++++. +..+.. ...+..++|+|+|++|++++..++.|.+||+
T Consensus 172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 233456789999999983444555689999999999888 777764 3567889999999987766535788999999
Q ss_pred cCCCcc--ceeeccc--ccCC---ceEEEEecCCCceEEeeec-CCcEEEEeCCCC
Q psy2305 232 RNPGCI--LHTFPRQ--VSTN---QRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTS 279 (334)
Q Consensus 232 ~~~~~~--~~~~~~~--~~~~---~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~ 279 (334)
.+ ++. +..+... .... ....++|+|+|++|++++. ++.|.+||+...
T Consensus 251 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 251 LS-GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TT-TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CC-CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 86 544 2222211 0011 1234789999998866554 679999999874
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=9.1e-28 Score=220.96 Aligned_cols=275 Identities=8% Similarity=-0.020 Sum_probs=188.3
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeece---eEEEEEEecccceecCCCcEE
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGG---IIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~s~~~~~l 80 (334)
+.+++|+|||+++++ +.||+|++||+.+++.. ..+.. +.. .|.+++| ||||++|
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~--------------~~~~~-~~~~~~~v~~~~~-------SpDg~~l 75 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST--------------VLIEG-KKIESLRAIRYEI-------SPDREYA 75 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE--------------EEECT-TTTTTTTCSEEEE-------CTTSSEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE--------------EEecc-ccccccccceEEE-------CCCCCEE
Confidence 578899999997776 78999999999988765 22222 221 2555555 8899999
Q ss_pred EEeeCC---------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeec
Q psy2305 81 LCSSMY---------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRN 151 (334)
Q Consensus 81 ~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~ 151 (334)
++++.+ +.+.+||+.+++. ..+..... ....+..++|||||+.|+.++++.|++||+.+ +.....
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~--~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~-g~~~~~-- 149 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEV--SNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRV-- 149 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTC--CSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEE--
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCcc--ccccccccEECCCCCEEEEEECCeEEEEECCC-CceEEE--
Confidence 998764 6788999998876 33432211 11147889999999999999889999999986 433321
Q ss_pred cccccccc------------------ceEEEEEcCCCCcEEEEeecCC--------------------------------
Q psy2305 152 LKPWFRKN------------------IVSAIAINPVHPDICALGTYSK-------------------------------- 181 (334)
Q Consensus 152 ~~~~~~~~------------------~v~~~~~~~~~~~~l~~~~~dg-------------------------------- 181 (334)
...+.. .+.+++|+|||+ .|++++.++
T Consensus 150 --~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 226 (723)
T 1xfd_A 150 --VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP 226 (723)
T ss_dssp --ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred --ecCCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence 222222 237899999999 888876543
Q ss_pred --eEEEEECCCCCceEeeccC------CCCeEEEEEccCCcEEEeeec---CCCeEEEEEccCCCccceeecccccCCce
Q psy2305 182 --IIGLFSDSDGRPLFFLKGH------NGGITHLEFSSNGILLFSGAR---KDCEIICWDLRNPGCILHTFPRQVSTNQR 250 (334)
Q Consensus 182 --~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 250 (334)
.|++||+.+++....+..+ ...+..++|+|||++|++... .+..|++||+.+ ++....+..+ ....+
T Consensus 227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~-~~~~~ 304 (723)
T 1xfd_A 227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDE-SEAWL 304 (723)
T ss_dssp EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEE-CSSCC
T ss_pred eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEec-cCCEE
Confidence 7999999988766666554 567899999999998876641 235799999987 5544443322 11222
Q ss_pred ----EEEEecCCCceEEee--ecCC------cEEEEe-CCCCCCCCCCCccccccccceecccccccce-eeeccCCCcc
Q psy2305 251 ----VYFDLTSCSNYLLSG--NTNG------DLSIWN-VNTSNLPSSPYEESVQEPLYKFSAHQDCTNG-VRWKHHKFER 316 (334)
Q Consensus 251 ----~~~~~s~~~~~l~~~--~~dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~s~~~~ 316 (334)
..++|+|||+.|+.. ..++ .|.+|| ...+.. .....+..+...+.. ++| +||+
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------~~~~~l~~~~~~~~~~~~~--spdg- 371 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----------DNIQSITSGDWDVTKILAY--DEKG- 371 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----------CCCCBSCCSSSCEEEEEEE--ETTT-
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----------cceeEeecCCeEEEeeeEE--cCCC-
Confidence 257899999987754 4566 577777 344310 013334333333444 699 9999
Q ss_pred cceeeEEeeecc
Q psy2305 317 DLLVADATCSGQ 328 (334)
Q Consensus 317 ~~~~~l~t~~~d 328 (334)
+.|+..+.+
T Consensus 372 ---~~l~~~~~~ 380 (723)
T 1xfd_A 372 ---NKIYFLSTE 380 (723)
T ss_dssp ---TEEEEEESS
T ss_pred ---CEEEEEEcC
Confidence 888766554
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=7.4e-26 Score=189.50 Aligned_cols=274 Identities=13% Similarity=0.126 Sum_probs=180.8
Q ss_pred cEEEEe-eCCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC-CcEE
Q psy2305 14 TCLLTN-SNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY-APIH 90 (334)
Q Consensus 14 ~~l~~~-~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d-~~i~ 90 (334)
++++++ +.++.|++|++.. +... ......+...+. .++|+|++++|++++.+ +.|.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~spdg~~l~~~~~~~~~v~ 63 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALT--------------LTQVVDVPGQVQ-------PMVVSPDKRYLYVGVRPEFRVL 63 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEE--------------EEEEEECSSCCC-------CEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEE--------------EeeeEecCCCCc-------eEEECCCCCEEEEeecCCCeEE
Confidence 444444 7899999999964 3221 111122333444 45558899988888876 8999
Q ss_pred EEeCC--CCee--eEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEE
Q psy2305 91 LWDSV--GGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAI 164 (334)
Q Consensus 91 iwd~~--~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~ 164 (334)
+|++. +++. +..+.... .+..++|+|++++|+++. ++.|.+||+.. +...... ........+.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~--~~~~~~~~~~~~ 134 (343)
T 1ri6_A 64 AYRIAPDDGALTFAAESALPG------SLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGVV--DVVEGLDGCHSA 134 (343)
T ss_dssp EEEECTTTCCEEEEEEEECSS------CCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEEE--EEECCCTTBCCC
T ss_pred EEEecCCCCceeeccccccCC------CCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Ccccccc--ccccCCCCceEE
Confidence 99987 5543 33333211 578999999999887654 78999999952 3222111 112233458899
Q ss_pred EEcCCCCcEEEEee-cCCeEEEEECCC-CCceE----eecc-CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC-Cc
Q psy2305 165 AINPVHPDICALGT-YSKIIGLFSDSD-GRPLF----FLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP-GC 236 (334)
Q Consensus 165 ~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~-~~ 236 (334)
+|+|+++ .+++++ .++.|.+||+.+ ++... .+.. ....+..++|+|++++|++++..++.|.+||+... +.
T Consensus 135 ~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 135 NISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp EECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EECCCCC-EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 9999999 777666 899999999987 54432 2222 34578899999999977655436899999999641 22
Q ss_pred c--ceeecc----cccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeee
Q psy2305 237 I--LHTFPR----QVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309 (334)
Q Consensus 237 ~--~~~~~~----~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 309 (334)
. ...+.. +.....+..++|+|+|++|+++ ..++.|.+|++..... ..+.+..+..+.. +..++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~--------~~~~~~~~~~~~~-~~~~~~ 284 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS--------VLSKEGFQPTETQ-PRGFNV 284 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--------CEEEEEEEECSSS-CCCEEE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC--------ceEEeeeecCCCc-cceEEE
Confidence 1 112211 1112345678999999888744 4789999999983110 0134444444444 899999
Q ss_pred ccCCCcccceeeEEeee-cceeeee
Q psy2305 310 KHHKFERDLLVADATCS-GQITNVK 333 (334)
Q Consensus 310 ~~s~~~~~~~~~l~t~~-~d~~i~~ 333 (334)
+|++ ++|++++ .|+.+.+
T Consensus 285 --s~dg----~~l~~~~~~~~~v~v 303 (343)
T 1ri6_A 285 --DHSG----KYLIAAGQKSHHISV 303 (343)
T ss_dssp --CTTS----SEEEEECTTTCEEEE
T ss_pred --CCCC----CEEEEecCCCCeEEE
Confidence 9999 8877777 5777654
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=7.3e-26 Score=189.55 Aligned_cols=268 Identities=11% Similarity=0.147 Sum_probs=176.9
Q ss_pred ceeEEEEcCCCcEEEEeeCC-CeEEEEECC--CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305 3 IEEDVDEAPDGTCLLTNSND-NHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY 79 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d-~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~ 79 (334)
.+.+++|+|+|++|++++.+ +.|++|++. +++.. ..........+.. ++|+|++++
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-------~~~s~dg~~ 97 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT--------------FAAESALPGSLTH-------ISTDHQGQF 97 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE--------------EEEEEECSSCCSE-------EEECTTSSE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee--------------eccccccCCCCcE-------EEEcCCCCE
Confidence 57789999999999988876 999999997 44432 1111111123444 455889998
Q ss_pred EEEeeC-CCcEEEEeCCC---CeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeee--c
Q psy2305 80 FLCSSM-YAPIHLWDSVG---GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSR--N 151 (334)
Q Consensus 80 l~~~~~-d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~--~ 151 (334)
|++++. ++.|.+||+.. .+....+.... .+.+++|+|++++|+++. ++.|.+||+...++..... .
T Consensus 98 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 171 (343)
T 1ri6_A 98 VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD------GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE 171 (343)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECCCT------TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEecCCCeEEEEECCCCccccccccccCCC------CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccc
Confidence 876654 78899999943 33444443322 578999999999888653 8999999998633332110 0
Q ss_pred ccccccccceEEEEEcCCCCcEEE-EeecCCeEEEEECCC--CCc--eEeec---cC---CCCeEEEEEccCCcEEEeee
Q psy2305 152 LKPWFRKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSD--GRP--LFFLK---GH---NGGITHLEFSSNGILLFSGA 220 (334)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~--~~~--~~~~~---~~---~~~i~~~~~~~~~~~l~~~~ 220 (334)
........+.+++|+|+++ +++ ++..++.|.+||+.. ++. ...+. .. ...+..++|+|+|++|+++.
T Consensus 172 -~~~~~~~~~~~~~~~pdg~-~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 172 -VTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp -EECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred -cccCCCCCcceEEECCCCC-EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence 1122335788999999999 555 445789999999954 432 22222 11 23567899999999887555
Q ss_pred cCCCeEEEEEccCCC---ccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCC--CCCCCCCCCcccccccc
Q psy2305 221 RKDCEIICWDLRNPG---CILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVN--TSNLPSSPYEESVQEPL 294 (334)
Q Consensus 221 ~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~ 294 (334)
..++.|.+||+.... ..+..+.. ...+..++|+|+|++|++++ .++.|.+|++. +++. +.+
T Consensus 250 ~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~----------~~~ 316 (343)
T 1ri6_A 250 RTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL----------HEK 316 (343)
T ss_dssp TTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE----------EEE
T ss_pred cCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee----------eEc
Confidence 368999999998311 22222322 22366789999999888877 57999999554 5421 233
Q ss_pred ceecccccccceeeeccCCCc
Q psy2305 295 YKFSAHQDCTNGVRWKHHKFE 315 (334)
Q Consensus 295 ~~~~~~~~~i~~~~~~~s~~~ 315 (334)
..+.. ......++| .|+.
T Consensus 317 ~~~~~-g~~p~~i~~--~~~~ 334 (343)
T 1ri6_A 317 GRYAV-GQGPMWVVV--NAHE 334 (343)
T ss_dssp EEEEC-SSSCCEEEE--EEEC
T ss_pred ccccc-CCCCeeEEE--Eccc
Confidence 34433 234677888 6654
No 139
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.95 E-value=1.3e-26 Score=207.98 Aligned_cols=259 Identities=11% Similarity=0.024 Sum_probs=185.0
Q ss_pred ceeEEEEcCCCcEEEEeeC-CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSN-DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+|++++|+|||++||+++. ||+++||++.+++.. .+..++...+..+.| +|| ++++
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~---------------~lt~~~~~~~~~~~~-------spd-~~l~ 79 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV---------------KLNREPINSVLDPHY-------GVG-RVIL 79 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE---------------ECCSSCCSEECEECT-------TCS-EEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcE---------------eeecccccccccccC-------CCC-eEEE
Confidence 6899999999999999886 999999998666543 333333345666555 778 7777
Q ss_pred EeeC---CCcEEEEeCCC---CeeeEEEcCccccccccceeEEEEcCCCCEE--EEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305 82 CSSM---YAPIHLWDSVG---GEIKATYRPYNQVDEVTHAYSLAFSLDGNKI--YAGFLSEVKIFSTDRPGRECVSRNLK 153 (334)
Q Consensus 82 ~~~~---d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~d~~i~i~d~~~~~~~~~~~~~~ 153 (334)
+++. +....+|.+.. +... .+.... .+...+|+|+++.+ +++.++.+.+||+.+ ++...
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~~~~----- 146 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK------PMRILSGVDTGEAVVFTGATEDRVALYALDG-GGLRE----- 146 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE-ECTTSC------SBEEEEEEECSSCEEEEEECSSCEEEEEEET-TEEEE-----
T ss_pred EeccCCCCcceEEEEEeccCCCccc-cccCCC------CceeeeeCCCCCeEEEEecCCCCceEEEccC-CcEEE-----
Confidence 7765 45556654432 3222 333222 34466888888643 344566666999985 43222
Q ss_pred ccccccceEEEEEcCCCCcEEEEeecC----CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--eEE
Q psy2305 154 PWFRKNIVSAIAINPVHPDICALGTYS----KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC--EII 227 (334)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~ 227 (334)
+..+.. .+++|+|||+ .|++++.+ +.|++||+.+++.. .+..|.+.+..++|+|||+.|+++. .++ .|+
T Consensus 147 l~~~~~--~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~ 221 (582)
T 3o4h_A 147 LARLPG--FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLV 221 (582)
T ss_dssp EEEESS--CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEE
T ss_pred eecCCC--ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEE
Confidence 222323 7899999999 88877776 78999999887754 6777888899999999999999777 788 899
Q ss_pred EEEccCCCccceeecccccCCceEEEE--------ecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc
Q psy2305 228 CWDLRNPGCILHTFPRQVSTNQRVYFD--------LTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA 299 (334)
Q Consensus 228 iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 299 (334)
+||+.+ ++.. .+..+ ...+..+. |+|||.++++++.++.+++|++ + +... .
T Consensus 222 ~~d~~~-~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g------------~~~~---~ 280 (582)
T 3o4h_A 222 TVDPRD-GSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G------------ERVE---A 280 (582)
T ss_dssp EECTTT-CCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T------------EEEC---C
T ss_pred EEcCCC-CcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C------------Ceec---c
Confidence 999987 5444 44433 22333344 9999988899999999999999 5 3333 2
Q ss_pred cccccceeeeccCCCcccceeeEEeeeccee
Q psy2305 300 HQDCTNGVRWKHHKFERDLLVADATCSGQIT 330 (334)
Q Consensus 300 ~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~ 330 (334)
..+.+.+++| + ++ +++++++.+.+
T Consensus 281 ~~~~v~~~~~--s-dg----~~l~~~s~~~~ 304 (582)
T 3o4h_A 281 PQGNHGRVVL--W-RG----KLVTSHTSLST 304 (582)
T ss_dssp CSSEEEEEEE--E-TT----EEEEEEEETTE
T ss_pred CCCceEEEEe--c-CC----EEEEEEcCCCC
Confidence 2356889999 9 99 89988887744
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=3.6e-26 Score=187.21 Aligned_cols=232 Identities=14% Similarity=0.054 Sum_probs=168.7
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
+.|.+++|+|+|++|++++ ++.|++||+.+ ++.. .....++...+.+++| +|++++|
T Consensus 42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~--------------~~~~~~~~~~~~~~~~-------spdg~~l 99 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE--------------KVDTGFATICNNDHGI-------SPDGALY 99 (297)
T ss_dssp SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE--------------ECCCTTCCCBCSCCEE-------CTTSSEE
T ss_pred cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce--------------EeccccccccccceEE-------CCCCCEE
Confidence 4689999999999999986 78999999998 7654 2222222344555454 8899999
Q ss_pred EEee--CCCcEEEE--eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305 81 LCSS--MYAPIHLW--DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRNLKP 154 (334)
Q Consensus 81 ~~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~~~ 154 (334)
++++ .++...|| +..+++ ...+.... .+..++|+|+++.|+ ++. ++.+++|+++..+.... .+
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~------~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~----~~ 168 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPSTGGT-PRLMTKNL------PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET----RL 168 (297)
T ss_dssp EEEECTTTSSCEEEEEETTCCC-CEECCSSS------SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE----EC
T ss_pred EEEEeCCCCcceEEEEECCCCc-eEEeecCC------CccceEECCCCCEEEEEECCCCceEEEEEECCCCcce----Ec
Confidence 9988 33445555 555544 33343322 578899999999887 555 89999999765344443 45
Q ss_pred cccccceEEEEEcCCCCcEEEEee-cCCeEEEEECC-CCCceEeeccCCCCeEEEEEccCCcEEEeeecCC---------
Q psy2305 155 WFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDS-DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD--------- 223 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--------- 223 (334)
..+...+.+++|+|+++ .++.++ .++.+.+|++. .+.....+..|...+..++|+|+|++|++++ .+
T Consensus 169 ~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~~~~~~ 246 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGR-WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS-YDADVFDHPRD 246 (297)
T ss_dssp CCSSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE-EETTCCSCCSS
T ss_pred ccCCCccccceECCCCC-EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE-cCCCCCccccc
Confidence 66778899999999999 666555 58899999986 5667777887888899999999999998887 45
Q ss_pred --CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC
Q psy2305 224 --CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG 269 (334)
Q Consensus 224 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 269 (334)
+.|++||+.. ++.........+...+..++|+|++++|++++.+.
T Consensus 247 ~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 247 LDVRVQLMDMDG-GNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEEETTS-CSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceEEEEEecCC-CCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999986 44322222112245566788999999998887653
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=8.1e-26 Score=208.53 Aligned_cols=274 Identities=10% Similarity=0.016 Sum_probs=193.6
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCC---CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE---LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY 79 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~ 79 (334)
.|.+++|||||++|++++. +.|++||+.++ ... .+. .+...+..++| ||||++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------------~l~-~~~~~~~~~~~-------SPDG~~ 165 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---------------QLT-HGEGFATDAKL-------SPKGGF 165 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---------------BCC-CSSSCEEEEEE-------CTTSSE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---------------Ecc-cCCcccccccC-------CCCCCE
Confidence 3789999999999999886 89999999987 432 222 23456777777 779999
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEcCccccc-----------cccceeEEEEcCCCCEEEEee-CC--------------
Q psy2305 80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVD-----------EVTHAYSLAFSLDGNKIYAGF-LS-------------- 133 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~-d~-------------- 133 (334)
|++++ ++.|++||+.+++...........- +...+..++|+|||++|++++ |+
T Consensus 166 la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 166 VSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp EEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCC
Confidence 99887 4689999999887655433221100 000147899999999998775 54
Q ss_pred -------------------cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-----CCeEEEEECC
Q psy2305 134 -------------------EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-----SKIIGLFSDS 189 (334)
Q Consensus 134 -------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~ 189 (334)
.|.+||+.+. ....... ....|...+..++| |||+ .|++++. +..|++||+.
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWID-LGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEEC-CCSCSSEEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETT
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCC-CceEEec-CCCCcceEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECC
Confidence 7888888741 2222210 11257788999999 9999 7776653 5689999999
Q ss_pred CCCceEeeccCCC----CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEE-EecCCCceEEe
Q psy2305 190 DGRPLFFLKGHNG----GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF-DLTSCSNYLLS 264 (334)
Q Consensus 190 ~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~ 264 (334)
+++....+..+.. .+..++|+|||+++++++ .++.++||.+...+. ...+..+ ...+..+ .|+|+|+.|+.
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~-~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~ 396 (741)
T 2ecf_A 321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE-RTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYF 396 (741)
T ss_dssp TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC-TTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEE
T ss_pred CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec-CCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEE
Confidence 9987777665543 346899999999888888 799888888764344 5555544 4445565 59999987754
Q ss_pred -eecCC--cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305 265 -GNTNG--DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 265 -~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
++.++ .++||++.... .....+.. ...+..++| +||+ ++|+....
T Consensus 397 ~~~~~~~~~~~l~~~~~~g-----------~~~~~l~~-~~~~~~~~~--spdg----~~l~~~~~ 444 (741)
T 2ecf_A 397 RAGIESARESQIYAVPLQG-----------GQPQRLSK-APGMHSASF--ARNA----SVYVDSWS 444 (741)
T ss_dssp EECSSCTTCBEEEEEETTC-----------CCCEECCC-SCSEEEEEE--CTTS----SEEEEEEE
T ss_pred EEeCCCCceEEEEEEEcCC-----------CCeeeccc-CCCceEEEE--CCCC----CEEEEEec
Confidence 44455 89999986521 23344444 456789999 9999 87776544
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=5.1e-25 Score=183.96 Aligned_cols=266 Identities=8% Similarity=-0.010 Sum_probs=188.5
Q ss_pred cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeece-eEEEEEEecccceecCCCcEE-EEeeCCCcEEE
Q psy2305 14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGG-IIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHL 91 (334)
Q Consensus 14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~i 91 (334)
++|++++.++.|++||..+++.. ..+...+.. .+ ..++++|+++.+ +++..++.|.+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~~~~-------~~~~~s~dg~~l~v~~~~~~~v~~ 60 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD--------------KVITIADAGPTP-------MVPMVAPGGRIAYATVNKSESLVK 60 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE--------------EEEECTTCTTCC-------CCEEECTTSSEEEEEETTTTEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEE--------------EEEEcCCCCCCc-------cceEEcCCCCEEEEEeCCCCeEEE
Confidence 57899999999999999988765 222211110 23 345558899765 45566789999
Q ss_pred EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-------------eCCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-------------FLSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
||+.+++.+..+...........+..++|+|+|++|+++ .++.|.+||+.+ ++.... +. ..
T Consensus 61 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~----~~-~~ 134 (337)
T 1pby_B 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKA----FE-AP 134 (337)
T ss_dssp EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEE----EE-CC
T ss_pred EECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEE----Ee-CC
Confidence 999999887766542210001146789999999988876 368999999985 444332 22 23
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--------------
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC-------------- 224 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-------------- 224 (334)
..+.+++|+|+++ +++++ ++.|.+||+.+++....+..+.. ...+.|+|+++.|+..+..++
T Consensus 135 ~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
T 1pby_B 135 RQITMLAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210 (337)
T ss_dssp SSCCCEEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred CCcceeEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence 4577899999999 77766 68999999999988777754431 112378999987766552233
Q ss_pred ---------eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc
Q psy2305 225 ---------EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295 (334)
Q Consensus 225 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 295 (334)
.|.+||+.+ ++.. .+........+..++|+|+|++++++ ++.|.+||+.++ +.+.
T Consensus 211 ~~~~~~~~~~v~~~d~~~-~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~------------~~~~ 274 (337)
T 1pby_B 211 PADPTAYRTGLLTMDLET-GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN------------ASIK 274 (337)
T ss_dssp TTSGGGEEEEEEEEETTT-CCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT------------EEEE
T ss_pred cccccccccceEEEeCCC-CCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC------------cCcc
Confidence 468999987 4433 33323334567789999999999888 689999999987 4555
Q ss_pred eecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 296 KFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 296 ~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+.. ...+.+++| +|++ ++|++++.++.+.+
T Consensus 275 ~~~~-~~~~~~~~~--s~dg----~~l~~~~~~~~i~v 305 (337)
T 1pby_B 275 RVPL-PHSYYSVNV--STDG----STVWLGGALGDLAA 305 (337)
T ss_dssp EEEC-SSCCCEEEE--CTTS----CEEEEESBSSEEEE
T ss_pred eecC-CCceeeEEE--CCCC----CEEEEEcCCCcEEE
Confidence 5543 346789999 9999 98888888888764
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=4.4e-25 Score=202.54 Aligned_cols=273 Identities=9% Similarity=0.011 Sum_probs=188.8
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.+++|||| ++++.+ .++.|++||+.+++.. .+.. +...+.+ ++|||||+.|++
T Consensus 83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~---------------~l~~-~~~~~~~-------~~~SpdG~~la~ 137 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT---------------YLFD-TNEETAS-------LDFSPVGDRVAY 137 (706)
T ss_dssp CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE---------------EEEC-CTTCCTT-------CEECTTSSEEEE
T ss_pred CceeEEECCC-CeEEEE-ECCEEEEEECCCCceE---------------EccC-CcccccC-------CcCCCCCCEEEE
Confidence 5899999999 555555 3599999999887653 1221 2233433 455889999998
Q ss_pred eeCCCcEEEEeCCC-----CeeeEEEcCcccc---------ccccceeEEEEcCCCCEEEEee-----------------
Q psy2305 83 SSMYAPIHLWDSVG-----GEIKATYRPYNQV---------DEVTHAYSLAFSLDGNKIYAGF----------------- 131 (334)
Q Consensus 83 ~~~d~~i~iwd~~~-----~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~----------------- 131 (334)
+ .++.|++||+.+ ++........... .+...+.+++|+|||++|++++
T Consensus 138 ~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~ 216 (706)
T 2z3z_A 138 V-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPL 216 (706)
T ss_dssp E-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSS
T ss_pred E-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence 5 689999999988 7665433322110 0011258999999999999764
Q ss_pred -----------------CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC-----eEEEEECC
Q psy2305 132 -----------------LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-----IIGLFSDS 189 (334)
Q Consensus 132 -----------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~ 189 (334)
+..|.+||+.+ +..... . ....|...+.+++|+|+|+ .|++++.++ .|++||+.
T Consensus 217 ~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~-~-~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~ 292 (706)
T 2z3z_A 217 EAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYL-Q-TGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAE 292 (706)
T ss_dssp SCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEEC-C-CCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETT
T ss_pred CCceEEeeCCCCCCCCCeeEEEEEECCC-CceEee-c-cCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECC
Confidence 25799999985 333221 0 1225667899999999999 888877765 89999999
Q ss_pred CCCceEeec--cCCC---CeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEE-EEecCCCce
Q psy2305 190 DGRPLFFLK--GHNG---GITHLEFSS--NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSNY 261 (334)
Q Consensus 190 ~~~~~~~~~--~~~~---~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~ 261 (334)
+++....+. .+.. .+..++|+| +|++|+++. .++.+++|++...+..+..+..+ ...+.. ++|+|+|+.
T Consensus 293 ~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~-~~g~~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 293 TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR-RDGWNHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDPKGTR 369 (706)
T ss_dssp TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC-TTSSCEEEEEETTSCEEEECCCS--SSCEEEEEEECTTSSE
T ss_pred CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc-cCCccEEEEEECCCCEEEecCCC--CeEEEeeeEEcCCCCE
Confidence 884444332 1222 246789999 999999888 79999999987435556666543 334554 789999988
Q ss_pred EEeeec-CC----cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305 262 LLSGNT-NG----DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ 328 (334)
Q Consensus 262 l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d 328 (334)
|+.++. ++ .|..||+.++. ...+. +...+..++| +|++ ++|+..+.+
T Consensus 370 l~~~~~~~~~~~~~l~~~d~~~~~-------------~~~l~-~~~~~~~~~~--spdg----~~l~~~~~~ 421 (706)
T 2z3z_A 370 LYFESTEASPLERHFYCIDIKGGK-------------TKDLT-PESGMHRTQL--SPDG----SAIIDIFQS 421 (706)
T ss_dssp EEEEESSSCTTCBEEEEEETTCCC-------------CEESC-CSSSEEEEEE--CTTS----SEEEEEEEC
T ss_pred EEEEecCCCCceEEEEEEEcCCCC-------------ceecc-CCCceEEEEE--CCCC----CEEEEEecC
Confidence 766544 44 67777777652 22232 5566889999 9999 887776443
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=7.4e-25 Score=201.57 Aligned_cols=280 Identities=10% Similarity=-0.013 Sum_probs=184.4
Q ss_pred ceeEEEEcCCCcEEEEeeCC---------CeEEEEECCCCCceeeeeCCCCCCCCcceeeee--eeceeEEEEEEecccc
Q psy2305 3 IEEDVDEAPDGTCLLTNSND---------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI--KEGGIIYDYVWYPKTS 71 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d---------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~ 71 (334)
.|.+++|||||++||+++.+ +.+++||+.+++.. .+.. .+...+. .+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------~l~~~~~~~~~~~-------~~ 119 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---------------SLDPPEVSNAKLQ-------YA 119 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---------------ECCCTTCCSCCCS-------BC
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---------------eccCCcccccccc-------cc
Confidence 38899999999999998764 78899999988753 1111 1122233 35
Q ss_pred eecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccc-------------cccceeEEEEcCCCCEEEEee-CC----
Q psy2305 72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVD-------------EVTHAYSLAFSLDGNKIYAGF-LS---- 133 (334)
Q Consensus 72 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~-d~---- 133 (334)
+|||||+.|++++. +.|++||+.+++............ ....+.+++|+|||+.|++++ ++
T Consensus 120 ~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 120 GWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp CBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred EECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 56899999999885 789999999887766554322100 001237899999999999765 32
Q ss_pred ------------------------------cEEEEEcCCCCCeeeeecc--cccccccceEEEEEcCCCCcEEEEeec--
Q psy2305 134 ------------------------------EVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTY-- 179 (334)
Q Consensus 134 ------------------------------~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 179 (334)
.|++||+.+ +........ ....+...+..++|+|||+ ++++...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~ 276 (723)
T 1xfd_A 199 IMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRA 276 (723)
T ss_dssp EEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETT
T ss_pred eEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCC
Confidence 788999886 332221100 1112366789999999998 7766543
Q ss_pred --CCeEEEEECCCCCceEeecc-CCCCe----EEEEEccCCcEEEee-ecCCC------eEEEEEccCCCcc--ceeecc
Q psy2305 180 --SKIIGLFSDSDGRPLFFLKG-HNGGI----THLEFSSNGILLFSG-ARKDC------EIICWDLRNPGCI--LHTFPR 243 (334)
Q Consensus 180 --dg~i~i~d~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~l~~~-~~~d~------~i~iwd~~~~~~~--~~~~~~ 243 (334)
+..|++||+.+++....+.. +...+ ..++|+|||+.|+.. +..++ .|++||+...+.. ...+..
T Consensus 277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 35799999999887666543 33333 378999999977754 32566 4666663221331 344432
Q ss_pred cccCCceEE-EEecCCCceEEeeecC---CcEEEEeCCCCCCCCCCCccccccccceecc---cccccceeeeccCCCcc
Q psy2305 244 QVSTNQRVY-FDLTSCSNYLLSGNTN---GDLSIWNVNTSNLPSSPYEESVQEPLYKFSA---HQDCTNGVRWKHHKFER 316 (334)
Q Consensus 244 ~~~~~~~~~-~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~s~~~~ 316 (334)
. ...+.. ++|+|+|+.|+..+.+ +.+++|++..... .....+.. |...+..++| +|++
T Consensus 357 ~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~--spdg- 421 (723)
T 1xfd_A 357 G--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN----------FNRQCLSCDLVENCTYFSASF--SHSM- 421 (723)
T ss_dssp S--SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT----------CCCBCSSTTSSSSCCCCEEEE--CTTS-
T ss_pred C--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC----------CCcceecccccCCCCeEEEEE--CCCC-
Confidence 2 222333 6899999999766554 7899999875421 12223332 5667889999 9999
Q ss_pred cceeeEEee
Q psy2305 317 DLLVADATC 325 (334)
Q Consensus 317 ~~~~~l~t~ 325 (334)
++|+..
T Consensus 422 ---~~l~~~ 427 (723)
T 1xfd_A 422 ---DFFLLK 427 (723)
T ss_dssp ---SEEEEE
T ss_pred ---CEEEEE
Confidence 776654
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=1e-23 Score=177.13 Aligned_cols=243 Identities=13% Similarity=0.140 Sum_probs=164.4
Q ss_pred cccceecCCCcEEEEeeC---CCcEEEEeCCCCeee--EEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEc
Q psy2305 68 PKTSSIDGFTSYFLCSSM---YAPIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFST 140 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~ 140 (334)
|..++|+|+|+ |++++. ++.|.+|++.+++.. ..+..+.. .+..++|+|+|++|++++ ++.+.+|++
T Consensus 42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-----~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT-----PPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp CCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC-----CCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCC-----CCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 45567799999 555543 689999999777632 22222222 678999999999888765 789999999
Q ss_pred CCCCCeeeeecccccc-------cccceEEEEEcCCCCcEEEEeecCCeEEEEECC-CCCceE--eecc-CCCCeEEEEE
Q psy2305 141 DRPGRECVSRNLKPWF-------RKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-DGRPLF--FLKG-HNGGITHLEF 209 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~i~~~~~ 209 (334)
...+...........+ ....+.+++|+|+|+ ++++...++.|.+|++. +++... .+.. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 7533322211001111 123488999999999 88888889999999998 444322 2222 2336788999
Q ss_pred ccCCcEEEeeecCCCeEEEEEccCC-Ccc--ceeeccccc----CCceEEEEecCCCceEE-eeecCCcEEEEeCCCCCC
Q psy2305 210 SSNGILLFSGARKDCEIICWDLRNP-GCI--LHTFPRQVS----TNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTSNL 281 (334)
Q Consensus 210 ~~~~~~l~~~~~~d~~i~iwd~~~~-~~~--~~~~~~~~~----~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~ 281 (334)
+|+|++|++++..++.+.+|++... +.. ...+..... ...+..++|+|+|++|+ +...++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 9999977775536899999999842 221 112221111 13477899999999875 455689999999974211
Q ss_pred CCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecc-eeee
Q psy2305 282 PSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ-ITNV 332 (334)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d-~~i~ 332 (334)
. +.+..+..+...+..++| +|++ ++|++++.+ +.+.
T Consensus 275 ~---------~~~~~~~~~~~~~~~~~~--spdg----~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 275 L---------TLIQQISTEGDFPRDFDL--DPTE----AFVVVVNQNTDNAT 311 (347)
T ss_dssp E---------EEEEEEECSSSCCCEEEE--CTTS----SEEEEEETTTTEEE
T ss_pred E---------EEeEEEecCCCCcCeEEE--CCCC----CEEEEEEcCCCcEE
Confidence 1 455556666667899999 9999 988887754 6554
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=3.6e-25 Score=203.17 Aligned_cols=280 Identities=11% Similarity=0.101 Sum_probs=182.5
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCc--eeeeeCCC--CCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELH--CKSVWRPS--NQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY 79 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~ 79 (334)
+..+.|. |..+++++.++ | +||+.+++. ...+.... ..+...... .......|.+++| ||| +.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~-------spd-~~ 94 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKF-QTTDAFPSFRTLD-------AGR-GL 94 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC------------CCCEEEEE-------TTT-TE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcc-ccccccCceeEEE-------CCC-Ce
Confidence 4557788 55667777777 8 999998876 31000000 000000000 0001134666665 778 55
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCC----CCeeeeeccccc
Q psy2305 80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRP----GRECVSRNLKPW 155 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~----~~~~~~~~~~~~ 155 (334)
++.+. ++.|++||+.+++....... .. .+.+++|+|||+.|+++.++.|++||+.+. ++... ...
T Consensus 95 ~~~~~-~~~i~~~d~~~~~~~~l~~~-~~-----~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~----~~~ 163 (706)
T 2z3z_A 95 VVLFT-QGGLVGFDMLARKVTYLFDT-NE-----ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA----VTI 163 (706)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEECC-TT-----CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE----SCS
T ss_pred EEEEE-CCEEEEEECCCCceEEccCC-cc-----cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE----ecc
Confidence 55553 59999999998876554432 22 678899999999999878999999999851 22222 122
Q ss_pred cccc--------------ceEEEEEcCCCCcEEEEee---------------------------------cCCeEEEEEC
Q psy2305 156 FRKN--------------IVSAIAINPVHPDICALGT---------------------------------YSKIIGLFSD 188 (334)
Q Consensus 156 ~~~~--------------~v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~ 188 (334)
.+.. .+.++.|+|||+ .|++++ .+..|++||+
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred CCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 2222 258899999999 888876 4468999999
Q ss_pred CCCCceEeec--cCCCCeEEEEEccCCcEEEeeecCCC-----eEEEEEccCCCccceeecccccCC---ceEEEEecC-
Q psy2305 189 SDGRPLFFLK--GHNGGITHLEFSSNGILLFSGARKDC-----EIICWDLRNPGCILHTFPRQVSTN---QRVYFDLTS- 257 (334)
Q Consensus 189 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~s~- 257 (334)
.+++...... .|...+.+++|+|||++|++++ .++ .|++||+.+ +.....+....... .+..+.|+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp~ 320 (706)
T 2z3z_A 243 ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVEPLHPLTFLPG 320 (706)
T ss_dssp TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCceEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCC-CceeeEEEEccCCCeECccCCceeecC
Confidence 8887554432 4667899999999999999877 565 899999987 52233332211121 124578999
Q ss_pred -CCceEEeeecCCcEEEEeCC-CCCCCCCCCccccccccceecccccccce-eeeccCCCcccceeeEEeeecc
Q psy2305 258 -CSNYLLSGNTNGDLSIWNVN-TSNLPSSPYEESVQEPLYKFSAHQDCTNG-VRWKHHKFERDLLVADATCSGQ 328 (334)
Q Consensus 258 -~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~s~~~~~~~~~l~t~~~d 328 (334)
+|+++++++.|+.++||.+. .+ ..+..+..+...+.. ++| +|++ +.|+.++.+
T Consensus 321 ~dg~~l~~~~~~g~~~l~~~~~~~------------~~~~~l~~~~~~v~~~~~~--spdg----~~l~~~~~~ 376 (706)
T 2z3z_A 321 SNNQFIWQSRRDGWNHLYLYDTTG------------RLIRQVTKGEWEVTNFAGF--DPKG----TRLYFESTE 376 (706)
T ss_dssp CSSEEEEEECTTSSCEEEEEETTS------------CEEEECCCSSSCEEEEEEE--CTTS----SEEEEEESS
T ss_pred CCCEEEEEEccCCccEEEEEECCC------------CEEEecCCCCeEEEeeeEE--cCCC----CEEEEEecC
Confidence 99999999999999999876 33 455666667667776 799 9999 777655443
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=4.9e-25 Score=210.12 Aligned_cols=269 Identities=10% Similarity=0.014 Sum_probs=201.9
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCC--CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPS--ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
.+.++.|+++ .++++++.++.++||.+.. +... .+..+. .+...+| +|+|+.|
T Consensus 205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~---------------~l~~~~--~~~~~~~-------SpDG~~l 259 (1045)
T 1k32_A 205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLR---------------KHTSFT--DYYPRHL-------NTDGRRI 259 (1045)
T ss_dssp CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCE---------------ECCCCC--SSCEEEE-------EESSSCE
T ss_pred cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcce---------------EecCCC--CcceeeE-------cCCCCEE
Confidence 5778899988 6777788889999997653 2221 222222 2333344 7799988
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCcccc------ccccceeEEEEc-CCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQV------DEVTHAYSLAFS-LDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK 153 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~ 153 (334)
+++. ++.|.+|++...+ +..+...... .+...+..++|+ |||+.|+++.++.+.+|++.. +. .. .
T Consensus 260 a~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~-~~-~~----~ 331 (1045)
T 1k32_A 260 LFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSG-TY-VL----K 331 (1045)
T ss_dssp EEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTS-SB-EE----E
T ss_pred EEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCC-Cc-eE----E
Confidence 8874 8899999985443 3344432100 011158899999 999999988899999999885 33 33 2
Q ss_pred cccccc-ceEEEEEcCCCCcEEEEeecCCeEE-EEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305 154 PWFRKN-IVSAIAINPVHPDICALGTYSKIIG-LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231 (334)
Q Consensus 154 ~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~ 231 (334)
+..|.. .+..++|+ +|+ .|++++.++.+. +||+.+++.. .+.+|...+..++|+|+|++|++++ .++.|++||+
T Consensus 332 ~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~ 407 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDL 407 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEE-EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEET
T ss_pred ccCCCcceEEeeeEc-CCC-eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEEC-CCCeEEEEEC
Confidence 455666 89999999 998 888888888899 9998876654 4447888999999999999999999 8999999999
Q ss_pred cCCCccceeecccccCCceEEEEecCCCceEEeeecCC----------cEEEEeCCCCCCCCCCCccccccccceecccc
Q psy2305 232 RNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG----------DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ 301 (334)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (334)
.+ ++....+..+ ...+..++|+|||++|++++.++ .|++||+.++ + ...+..|.
T Consensus 408 ~t-g~~~~~~~~~--~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g------------~-~~~l~~~~ 471 (1045)
T 1k32_A 408 ET-GKPTVIERSR--EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR------------K-IFAATTEN 471 (1045)
T ss_dssp TT-CCEEEEEECS--SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT------------E-EEECSCSS
T ss_pred CC-CceEEeccCC--CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC------------c-EEEeeCCC
Confidence 87 6555544443 45566789999999999887654 8999999986 4 55677777
Q ss_pred cccceeeeccCCCcccceeeEEeeeccee
Q psy2305 302 DCTNGVRWKHHKFERDLLVADATCSGQIT 330 (334)
Q Consensus 302 ~~i~~~~~~~s~~~~~~~~~l~t~~~d~~ 330 (334)
..+..++| +||| ++|++++.++.
T Consensus 472 ~~~~~~~~--spdG----~~l~~~s~~~~ 494 (1045)
T 1k32_A 472 SHDYAPAF--DADS----KNLYYLSYRSL 494 (1045)
T ss_dssp SBEEEEEE--CTTS----CEEEEEESCCC
T ss_pred cccCCceE--cCCC----CEEEEEecccC
Confidence 78889999 9999 99998887654
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=1.3e-23 Score=176.41 Aligned_cols=252 Identities=12% Similarity=0.179 Sum_probs=162.7
Q ss_pred ceeEEEEcCCCcEEEEeeC---CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305 3 IEEDVDEAPDGTCLLTNSN---DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY 79 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~ 79 (334)
.+..++|+|||+ |++++. ++.|++|++.++.... ...+. .+... |..++|+|++++
T Consensus 41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~------------~~~~~-~~~~~-------p~~~a~spdg~~ 99 (347)
T 3hfq_A 41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK------------LNTVV-APGTP-------PAYVAVDEARQL 99 (347)
T ss_dssp CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE------------EEEEE-EESCC-------CSEEEEETTTTE
T ss_pred CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE------------eeeee-cCCCC-------CEEEEECCCCCE
Confidence 356799999999 655544 6899999997665420 01111 12233 344556889998
Q ss_pred EEEee-CCCcEEEEeCCC-Ce--eeEEEcCcccc----ccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305 80 FLCSS-MYAPIHLWDSVG-GE--IKATYRPYNQV----DEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 80 l~~~~-~d~~i~iwd~~~-~~--~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 150 (334)
|++++ .++.|.+|++.. +. .+..+...... .....+.+++|+|+|+++++.. ++.|.+|++...+......
T Consensus 100 l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~ 179 (347)
T 3hfq_A 100 VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS 179 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee
Confidence 88887 678999999853 33 22333211110 0111478999999999544555 7899999998434332211
Q ss_pred cccccccccceEEEEEcCCCCcEEEE-eecCCeEEEEECCC--CCc--eEeeccCC------CCeEEEEEccCCcEEEee
Q psy2305 151 NLKPWFRKNIVSAIAINPVHPDICAL-GTYSKIIGLFSDSD--GRP--LFFLKGHN------GGITHLEFSSNGILLFSG 219 (334)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~------~~i~~~~~~~~~~~l~~~ 219 (334)
. ........+..++|+|+|+ ++++ ...++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+++
T Consensus 180 ~-~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 180 V-LTMEAGFGPRHLVFSPDGQ-YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp E-EECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred e-EEcCCCCCCceEEECCCCC-EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence 0 0111233577899999999 5554 56788999999874 432 22232222 348899999999988655
Q ss_pred ecCCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCceEEeeecC-CcEEEE--eCCCC
Q psy2305 220 ARKDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-GDLSIW--NVNTS 279 (334)
Q Consensus 220 ~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~iw--d~~~~ 279 (334)
...++.|.+|++...+. .+..+..+ ...+..++|+|+|++|++++.+ +.|.+| |..++
T Consensus 258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EETTTEEEEEEECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred eCCCCEEEEEEECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 43689999999974232 22223222 3456789999999998887764 899999 44555
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=205.41 Aligned_cols=266 Identities=10% Similarity=0.005 Sum_probs=180.1
Q ss_pred EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeece---eEEEEEEecccceecCCCcEEEE
Q psy2305 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGG---IIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
+++|+|||++++++ .|+.|++||+.+++.. .+..++.. .+.+++| ||||++|++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------~~~~~~~~~~~~~~~~~~-------SpDg~~la~ 76 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------TILSNRTMKSVNASNYGL-------SPDRQFVYL 76 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------EEECHHHHHTTTCSEEEE-------CTTSSEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------EEEccccccccceeeEEE-------CCCCCeEEE
Confidence 67999999766655 6999999999998865 22222222 2556555 889999998
Q ss_pred eeC---------CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305 83 SSM---------YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK 153 (334)
Q Consensus 83 ~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~ 153 (334)
++. ++.|++||+.+++.+..... .. .+..++|||||+.|+.+.++.|++|++.+ +..... .
T Consensus 77 ~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~-----~~~~~~~SPDG~~la~~~~~~i~~~~~~~-g~~~~l---~ 146 (719)
T 1z68_A 77 ESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PR-----PIQYLCWSPVGSKLAYVYQNNIYLKQRPG-DPPFQI---T 146 (719)
T ss_dssp EEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CS-----SBCCEEECSSTTCEEEEETTEEEEESSTT-SCCEEC---C
T ss_pred EecCceeEEeecceEEEEEECCCCccccceec-Cc-----ccccceECCCCCEEEEEECCeEEEEeCCC-CCcEEE---e
Confidence 876 68999999998876211111 11 67899999999999998999999999986 333221 1
Q ss_pred ccccccce-----------------EEEEEcCCCCcEEEEeecCC----------------------------------e
Q psy2305 154 PWFRKNIV-----------------SAIAINPVHPDICALGTYSK----------------------------------I 182 (334)
Q Consensus 154 ~~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg----------------------------------~ 182 (334)
..++...+ .+++|+|||+ .|++++.|. .
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~ 225 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR 225 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence 22322222 4899999999 888877552 7
Q ss_pred EEEEECCCCCce--------EeeccCCCCeEEEEEccCCcEEEeeec-CC--CeEEEEE----ccCCCccceee----cc
Q psy2305 183 IGLFSDSDGRPL--------FFLKGHNGGITHLEFSSNGILLFSGAR-KD--CEIICWD----LRNPGCILHTF----PR 243 (334)
Q Consensus 183 i~i~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d--~~i~iwd----~~~~~~~~~~~----~~ 243 (334)
|++||+.+++.. ..+.+|...+..++|+||++++++... .+ ..|.+|| ..+ ++....+ ..
T Consensus 226 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~ 304 (719)
T 1z68_A 226 IFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEES 304 (719)
T ss_dssp EEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEEC
T ss_pred EEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEeccccc
Confidence 899999887653 223467788999999999887776431 12 3488888 655 4433333 12
Q ss_pred cccCCceE-----EEEecCCCceEEe--eecCC--cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305 244 QVSTNQRV-----YFDLTSCSNYLLS--GNTNG--DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF 314 (334)
Q Consensus 244 ~~~~~~~~-----~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~ 314 (334)
+ ...+. .+.|+|||+.|+. ...+| .|.+||+.++ + ...+..+...+..+.+ + +
T Consensus 305 ~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~------------~-~~~lt~~~~~v~~~~~--~-d 366 (719)
T 1z68_A 305 R--TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE------------N-AIQITSGKWEAINIFR--V-T 366 (719)
T ss_dssp S--SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST------------T-CEECSCSSSCEEEEEE--E-C
T ss_pred C--CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC------------c-eEecccCceEEEEEEE--E-e
Confidence 2 22332 5679999996654 33444 5777787765 2 3344445556778888 7 7
Q ss_pred cccceeeEEeeecc
Q psy2305 315 ERDLLVADATCSGQ 328 (334)
Q Consensus 315 ~~~~~~~l~t~~~d 328 (334)
+ +.|+..+.+
T Consensus 367 ~----~~i~~~~~~ 376 (719)
T 1z68_A 367 Q----DSLFYSSNE 376 (719)
T ss_dssp S----SEEEEEESC
T ss_pred C----CEEEEEEec
Confidence 7 555555443
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.94 E-value=2.5e-23 Score=175.67 Aligned_cols=252 Identities=13% Similarity=0.111 Sum_probs=162.4
Q ss_pred ceeEEEEcCCCcEEEEeeCC----CeEEEEECCCC--CceeeeeCCCCCCCCcceeeeee-eceeEEEEEEecccceecC
Q psy2305 3 IEEDVDEAPDGTCLLTNSND----NHLRTFDLPSE--LHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d----~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~s~ 75 (334)
.+..++|+|||++|++++.+ +.|.+|++... +.. ...... +...... +++
T Consensus 51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~--------------~~~~~~~~~~~p~~-------~~~-- 107 (361)
T 3scy_A 51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH--------------LLNTQKTMGADPCY-------LTT-- 107 (361)
T ss_dssp CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE--------------EEEEEECSSSCEEE-------EEE--
T ss_pred CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE--------------EeeEeccCCCCcEE-------EEE--
Confidence 45678999999999998875 79999988763 322 111111 1222222 333
Q ss_pred CCcEEEEee-CCCcEEEEeCCCCeeeEEE----cCccc-----cccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCC
Q psy2305 76 FTSYFLCSS-MYAPIHLWDSVGGEIKATY----RPYNQ-----VDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRP 143 (334)
Q Consensus 76 ~~~~l~~~~-~d~~i~iwd~~~~~~~~~~----~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~ 143 (334)
++++|++++ .++.|.+|++.....+..+ ..... ......+.+++|+|+|++|+++. ++.|.+|++...
T Consensus 108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 777777665 5789999998754322111 11000 00111458899999999777554 789999999864
Q ss_pred CC----e-eeee---cccccccccceEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCc--eEee---ccCCCCeEEEEE
Q psy2305 144 GR----E-CVSR---NLKPWFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDSDGRP--LFFL---KGHNGGITHLEF 209 (334)
Q Consensus 144 ~~----~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~---~~~~~~i~~~~~ 209 (334)
.. . +... ..........+..++|+|+|+ ++++++ .++.|.+||+.+++. +..+ ..+......++|
T Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 266 (361)
T 3scy_A 188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK-FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL 266 (361)
T ss_dssp CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE
T ss_pred CCcccccceeecccccceecCCCCCCeEEEEcCCCC-EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE
Confidence 32 1 1110 001223345678999999999 776665 689999999987643 2222 233355789999
Q ss_pred ccCCcEEEeeecC-CCeEEEEEccCC-CccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeC--CCC
Q psy2305 210 SSNGILLFSGARK-DCEIICWDLRNP-GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNV--NTS 279 (334)
Q Consensus 210 ~~~~~~l~~~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~ 279 (334)
+|+|++|+++.+. ++.|.+|++... +. +..+........+..++|+|+|++|++++ .++.|.+|++ .++
T Consensus 267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~-~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g 340 (361)
T 3scy_A 267 SPDGKYLYASNRLKADGVAIFKVDETNGT-LTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG 340 (361)
T ss_dssp CTTSSEEEEEECSSSCEEEEEEECTTTCC-EEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCCCEEEEECCCCCCEEEEEEEcCCCCc-EEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence 9999999887734 589999999631 33 22221111134566799999999988887 5789999654 455
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=6.2e-24 Score=202.54 Aligned_cols=268 Identities=12% Similarity=0.049 Sum_probs=197.0
Q ss_pred ceeEEEEc-CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 3 IEEDVDEA-PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 3 ~V~~~~~s-p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
.|.+++|| |||++|++++ ++.|++|+..++... .+..+....+..+.| + +|+.|+
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-------s-dg~~l~ 352 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---------------KVPEPLRIRYVRRGG-------D-TKVAFI 352 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE---------------ECSCCSCEEEEEECS-------S-SEEEEE
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE---------------EccCCCcceEEeeeE-------c-CCCeEE
Confidence 58899999 9999999887 789999999877643 222222225555544 8 999999
Q ss_pred EeeCCCcEE-EEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 82 CSSMYAPIH-LWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 82 ~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++.++.+. +|++.+++... +..+.. .+..++|+|||++|++++ ++.|++||+.+ ++... ....|..
T Consensus 353 ~~s~~~~l~~~~d~~~~~~~~-l~~~~~-----~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~----~~~~~~~ 421 (1045)
T 1k32_A 353 HGTREGDFLGIYDYRTGKAEK-FEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTV----IERSREA 421 (1045)
T ss_dssp EEETTEEEEEEEETTTCCEEE-CCCCCC-----SEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEE----EEECSSS
T ss_pred EEECCCceEEEEECCCCCceE-ecCCcc-----ceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEE----eccCCCC
Confidence 988888888 89988765443 333222 789999999999999887 89999999986 44433 3457888
Q ss_pred ceEEEEEcCCCCcEEEEeecCC----------eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305 160 IVSAIAINPVHPDICALGTYSK----------IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW 229 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw 229 (334)
.+.+++|+|+|+ +|++++.++ .|++||+.+++ ...+..|...+..++|+|+|++|++++ .++...+|
T Consensus 422 ~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s-~~~~~~~~ 498 (1045)
T 1k32_A 422 MITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS-YRSLDPSP 498 (1045)
T ss_dssp CCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE-SCCCCCEE
T ss_pred CccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe-cccCCcCc
Confidence 899999999999 888776654 89999998876 677778888899999999999999998 77776666
Q ss_pred EccCCCc-------------------c--c-----------eeecc--------cccCCceEEEEecCCCceEEe-----
Q psy2305 230 DLRNPGC-------------------I--L-----------HTFPR--------QVSTNQRVYFDLTSCSNYLLS----- 264 (334)
Q Consensus 230 d~~~~~~-------------------~--~-----------~~~~~--------~~~~~~~~~~~~s~~~~~l~~----- 264 (334)
+...... + + ..+.+ ......+..+.++|+|+++++
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g 578 (1045)
T 1k32_A 499 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 578 (1045)
T ss_dssp CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred chhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccC
Confidence 5432000 0 0 00000 012345677889999987875
Q ss_pred --------eecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305 265 --------GNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQIT 330 (334)
Q Consensus 265 --------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~ 330 (334)
......|.+||+.+++ ...+. ..+..++| +||| ++|++++.|+.
T Consensus 579 ~~~~~~~~~~~~~~l~~~d~~~~~-------------~~~l~---~~v~~~~~--S~DG----~~l~~~~~~~i 630 (1045)
T 1k32_A 579 EFAAYYQGAPEKGVLLKYDVKTRK-------------VTEVK---NNLTDLRL--SADR----KTVMVRKDDGK 630 (1045)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCC-------------EEEEE---EEEEEEEE--CTTS----CEEEEEETTSC
T ss_pred cccccccccCCCceEEEEECCCCc-------------EEEee---cCcceEEE--CCCC----CEEEEEcCCcE
Confidence 1224578889998862 22232 55788999 9999 99999988743
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=1.5e-24 Score=186.96 Aligned_cols=211 Identities=8% Similarity=-0.026 Sum_probs=149.2
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL- 81 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~- 81 (334)
.+..+++++++.++++++.++ +++|+...........................+...|.+++| +|++++|+
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------spdg~~lav 109 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-------SCDNLTLSA 109 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-------CTTSCEEEE
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-------cCCCCEEEE
Confidence 477899999999999999887 899876422110000000000000011112234566888877 67999999
Q ss_pred ---EeeCCCcEEEEeCCCC--------ee---eEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCCC
Q psy2305 82 ---CSSMYAPIHLWDSVGG--------EI---KATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPGR 145 (334)
Q Consensus 82 ---~~~~d~~i~iwd~~~~--------~~---~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~ 145 (334)
+++.|+.|++||+.++ +. ...+..|.. .|.+++|+|+ +.+|++++ ||.|++||+++ +.
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~ 183 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG-----MVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TV 183 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGG-----SEEEEEECSSCTTEEEEEETTSCEEEEEESS-SE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCC-----ceEEEEECCCCCCEEEEEECCCeEEEEEcCC-Cc
Confidence 7888999999998654 22 222333332 8999999998 78888887 99999999996 33
Q ss_pred eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------CCCeEEEEEccCCcEEEe
Q psy2305 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------NGGITHLEFSSNGILLFS 218 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~ 218 (334)
... ...+|...|.+++|+|+|+ +|++|+.||.|++||++ ++....+..| ...+.+++|++++.++++
T Consensus 184 ~~~----~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 184 KVC----ATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp EEE----EEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred cee----eccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence 332 3456888999999999999 99999999999999998 5555555433 237899999999888765
Q ss_pred eecCCC------eEEEEEccC
Q psy2305 219 GARKDC------EIICWDLRN 233 (334)
Q Consensus 219 ~~~~d~------~i~iwd~~~ 233 (334)
.+..+| .+++|+++.
T Consensus 258 ~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 258 YAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEETTCCSSSCCEEEEEECCC
T ss_pred EccCCCccCCCCceEEEEecc
Confidence 442443 389999986
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=2.3e-24 Score=185.81 Aligned_cols=203 Identities=10% Similarity=0.019 Sum_probs=148.3
Q ss_pred ceecCCCcEEEEeeCCCcEEEEeCCCC----------eeeEEEcCccccccccceeEEEEcCCCCEEE----Eee-CCcE
Q psy2305 71 SSIDGFTSYFLCSSMYAPIHLWDSVGG----------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIY----AGF-LSEV 135 (334)
Q Consensus 71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~~~-d~~i 135 (334)
+++++++.++++++.++ +++|+.... .................|.+++|+|++++|+ +++ |+.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 44577899999999888 888864211 0111111100011122699999999999999 666 8999
Q ss_pred EEEEcCCC-----C--CeeeeecccccccccceEEEEEcCC-CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEE
Q psy2305 136 KIFSTDRP-----G--RECVSRNLKPWFRKNIVSAIAINPV-HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHL 207 (334)
Q Consensus 136 ~i~d~~~~-----~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 207 (334)
++||+.+. . +.+.... .+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+....+|...|.++
T Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~-~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v 198 (434)
T 2oit_A 121 AFFDVRTFSNEAKQQKRPFAYHK-LLKDAGGMVIDMKWNPTVPS-MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSV 198 (434)
T ss_dssp EEEEHHHHHCTTCSSCCCSEEEE-CCCSGGGSEEEEEECSSCTT-EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEE
T ss_pred EEEEccccccCCcCCcceeeeee-ccCCCCCceEEEEECCCCCC-EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEE
Confidence 99998752 0 1111111 45679999999999998 55 99999999999999999987776677788999999
Q ss_pred EEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc-----cCCceEEEEecCCCceEEee-ecCC------cEEEEe
Q psy2305 208 EFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV-----STNQRVYFDLTSCSNYLLSG-NTNG------DLSIWN 275 (334)
Q Consensus 208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~~-~~dg------~i~iwd 275 (334)
+|+|+|++|++++ .|+.|++||++ +.....+..+. +...+.++.|++++.++++. ..+| .+++|+
T Consensus 199 ~wspdg~~lasgs-~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 199 CWSPKGKQLAVGK-QNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp EECTTSSCEEEEE-TTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred EEcCCCCEEEEEc-CCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 9999999999999 89999999998 33334443332 12378899999998887653 3343 389999
Q ss_pred CCCC
Q psy2305 276 VNTS 279 (334)
Q Consensus 276 ~~~~ 279 (334)
+...
T Consensus 276 l~~~ 279 (434)
T 2oit_A 276 LPKK 279 (434)
T ss_dssp CCCT
T ss_pred eccC
Confidence 9875
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=1.2e-23 Score=176.51 Aligned_cols=239 Identities=15% Similarity=0.076 Sum_probs=171.5
Q ss_pred EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-Eee
Q psy2305 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL-CSS 84 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~-~~~ 84 (334)
.+++++++.++++++.++.|++||..+++.. ..+..+....+.. ++++|++++++ +..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~~~~~-------~~~s~dg~~~~v~~~ 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY--------------KSCVMPDKFGPGT-------AMMAPDNRTAYVLNN 62 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEE--------------EEEECSSCCSSCE-------EEECTTSSEEEEEET
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEE--------------EEEecCCCCCCce-------eEECCCCCEEEEEeC
Confidence 5678899999999999999999999988765 2332222112333 44588998654 555
Q ss_pred CCCcEEEEeCCCCeeeEEEcCcccc-ccccceeEEEEcCCCCEEEEee-C------------CcEEEEEcCCCCCeeeee
Q psy2305 85 MYAPIHLWDSVGGEIKATYRPYNQV-DEVTHAYSLAFSLDGNKIYAGF-L------------SEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 85 ~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d------------~~i~i~d~~~~~~~~~~~ 150 (334)
.++.|.+||+.+++....+...... .....+..++|+|+|++|+++. + +.|.+||+.+ ++.....
T Consensus 63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~ 141 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPV 141 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCS
T ss_pred CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC-cccccee
Confidence 6889999999999887776542210 0001478999999999999776 4 8999999985 3222210
Q ss_pred cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----------------------------
Q psy2305 151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN----------------------------- 201 (334)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------------- 201 (334)
....+...+.+++|+|+|+ +++ + ++.|.+||+.+++.+..+..+.
T Consensus 142 --~~~~~~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (349)
T 1jmx_B 142 --RTFPMPRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 215 (349)
T ss_dssp --EEEECCSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred --eeccCCCcccceeECCCCc-EEE-c--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeee
Confidence 1122344688999999998 666 3 3349999998887766654321
Q ss_pred ---------------------------------------CCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305 202 ---------------------------------------GGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILHTF 241 (334)
Q Consensus 202 ---------------------------------------~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~ 241 (334)
..+..++|+| ++++++++ ++.|.+||+.+ ++.+..+
T Consensus 216 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~-~~~~~~~ 291 (349)
T 1jmx_B 216 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQ-RKLIKAA 291 (349)
T ss_dssp EEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTT-TEEEEEE
T ss_pred eeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECcc-CeEEEEE
Confidence 1345677889 99988877 67999999987 6655555
Q ss_pred cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
.. ...+..++|+|+|++|++++.++.|.+||+.++
T Consensus 292 ~~---~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 292 NL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred cC---CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 42 234567899999999988888999999999987
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1.8e-23 Score=174.58 Aligned_cols=238 Identities=12% Similarity=0.059 Sum_probs=172.1
Q ss_pred eeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 4 EEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 4 V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
+.+++|+|+|++++ ++..++.|.+||+.+++... .+...+... ..-.|..++++|++++|++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~--------------~~~~~~~~~---~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG--------------RIDLSTPEE---RVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE--------------EEECCBTTE---EEECTTCEEECTTSSEEEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe--------------eEEcCCccc---ccccccceEECCCCCEEEE
Confidence 67899999998664 55567899999999887652 222111000 0112455667899998888
Q ss_pred ee------------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee
Q psy2305 83 SS------------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 83 ~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 150 (334)
+. .++.|.+||+.+++....+.... .+..++|+|++++|+++ ++.|.+||+.+ ++.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~ 170 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDK 170 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEE
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEeCCC------CcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeee
Confidence 85 57999999999988877776422 57789999999988877 78899999986 4444321
Q ss_pred cccccccccceEEEEEcCCCCcEEEEee-cCC-----------------------eEEEEECCCCCce-EeeccCCCCeE
Q psy2305 151 NLKPWFRKNIVSAIAINPVHPDICALGT-YSK-----------------------IIGLFSDSDGRPL-FFLKGHNGGIT 205 (334)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg-----------------------~i~i~d~~~~~~~-~~~~~~~~~i~ 205 (334)
. ......+ +.|+|++. .++..+ .++ .|.+||+.+++.. ..+..+...+.
T Consensus 171 ~--~~~~~~~---~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 244 (337)
T 1pby_B 171 P--IQSWEAE---TYAQPDVL-AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF 244 (337)
T ss_dssp C--STTTTTT---TBCCCBCC-CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred e--ccccCCC---ceeCCCcc-EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence 1 1111122 37899988 554433 233 4789999988764 22345666788
Q ss_pred EEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
+++|+|+|++|+++ ++.|++||+.+ ++.+..+.. ...+.+++|+|+|++|++++.++.|.+||+.++
T Consensus 245 ~~~~s~dg~~l~~~---~~~v~~~d~~~-~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 245 STAVNPAKTRAFGA---YNVLESFDLEK-NASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEEECTTSSEEEEE---ESEEEEEETTT-TEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred eEEECCCCCEEEEe---CCeEEEEECCC-CcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 99999999998877 58999999987 665555543 234567899999999998888999999999987
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.3e-22 Score=170.46 Aligned_cols=240 Identities=11% Similarity=0.072 Sum_probs=171.6
Q ss_pred eeEEEEcCCCcEEEEe-eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 4 EEDVDEAPDGTCLLTN-SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
+..++|+|+|++++++ ..++.|.+||..+++....+.......++. .....+.++. ++|+++++++
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-------~s~dg~~l~~ 157 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE------VRPLQPRELV-------ADDATNTVYI 157 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS------CCCCEEEEEE-------EETTTTEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc------cCCCCCceEE-------ECCCCCEEEE
Confidence 5678999999966554 567999999999988753221110000000 0001134444 4789988777
Q ss_pred ee--CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 83 SS--MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 83 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++ .++.|.+||..+++....+..... .+..++|+|++++|+++. ++.+.+||+.+ ++..........++..
T Consensus 158 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~ 231 (353)
T 3vgz_A 158 SGIGKESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKEH 231 (353)
T ss_dssp EEESSSCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCC
T ss_pred EecCCCceEEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCc
Confidence 65 478899999999998888764333 578899999999998876 89999999986 5544432111223556
Q ss_pred ceEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 160 IVSAIAINPVHPDICALGT-YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
.+.+++|+|+++ .+++++ .++.|.+||+.+++.+..+..... ..++|+|+|++++++...++.|.+||..+ ++.+
T Consensus 232 ~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~ 307 (353)
T 3vgz_A 232 FFINISLDTARQ-RAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKS-YKVV 307 (353)
T ss_dssp CEEEEEEETTTT-EEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTT-TEEE
T ss_pred ccceEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCC-CeEE
Confidence 788999999999 655554 459999999999988887765432 57999999997766663689999999987 6666
Q ss_pred eeecccccCCceEEEEecCCCceEEeeecCC
Q psy2305 239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG 269 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 269 (334)
..+.. ...+..++|+|+|++|+++..++
T Consensus 308 ~~~~~---~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 KTFDT---PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEC---CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEEec---CCCCCeEEEcCCCCEEEEEEccc
Confidence 55543 34677899999999887776654
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.92 E-value=1.7e-22 Score=170.71 Aligned_cols=253 Identities=12% Similarity=0.106 Sum_probs=166.4
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECC-CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE--
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLP-SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY-- 79 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~-- 79 (334)
.+..++|+|||++|++++.+ .|.+|++. +++.. ........+ .|..++++|+|++
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--------------~~~~~~~~g-------~~~~~~~spdg~~l~ 98 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--------------HEASHPIGG-------HPRANDADTNTRAIF 98 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--------------EEEEEECCS-------SGGGGCTTSCCEEEE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--------------EeeEeecCC-------CCccEEECCCCCEEE
Confidence 46789999999999998887 99999987 55432 111110001 2456888999994
Q ss_pred EEEee-------------CCCcEEEEeCC-CCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCC
Q psy2305 80 FLCSS-------------MYAPIHLWDSV-GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRP 143 (334)
Q Consensus 80 l~~~~-------------~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~ 143 (334)
++++. .++.+.+|++. +++....+....+. ....+.+++|+|||++|+++. ++.|.+|++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~ 177 (365)
T 1jof_A 99 LLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ-ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS 177 (365)
T ss_dssp EEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC-CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence 45553 68899999987 46554443321100 111688999999999888764 689999999821
Q ss_pred CCeeeeecccccccccceEEEEEcCCCCcEEEEeec-CCeEEEEECC--CCCce---Ee---ec----cCCC------Ce
Q psy2305 144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-SKIIGLFSDS--DGRPL---FF---LK----GHNG------GI 204 (334)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~---~~----~~~~------~i 204 (334)
++......+....+...+..++|+|+|+ ++++++. ++.|.+|++. +++.. .. +. +|.. .+
T Consensus 178 g~~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 256 (365)
T 1jof_A 178 GEVELVGSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred CCEEEeeeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence 4432211001112356689999999999 7776654 7899999865 45542 12 21 1222 48
Q ss_pred EEEE-EccCCcEEEeeecCCC-----eEEEEEccCCCccceeec-ccccCCceEEEEecC---CCceEEeeecC-CcEEE
Q psy2305 205 THLE-FSSNGILLFSGARKDC-----EIICWDLRNPGCILHTFP-RQVSTNQRVYFDLTS---CSNYLLSGNTN-GDLSI 273 (334)
Q Consensus 205 ~~~~-~~~~~~~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~s~---~~~~l~~~~~d-g~i~i 273 (334)
..++ |+|||++|+++.+.+. .|.+|++...++...... ..........++|+| +|++|++++.+ +.|.+
T Consensus 257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence 8999 9999999887763233 899999963244332111 111122334577899 89999988764 89999
Q ss_pred EeCCCC
Q psy2305 274 WNVNTS 279 (334)
Q Consensus 274 wd~~~~ 279 (334)
|++...
T Consensus 337 ~~~~~~ 342 (365)
T 1jof_A 337 YRWKDE 342 (365)
T ss_dssp EEEETT
T ss_pred EEEchh
Confidence 998764
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=1.2e-21 Score=165.37 Aligned_cols=276 Identities=13% Similarity=0.125 Sum_probs=176.2
Q ss_pred cCCCcEEEEee----CCCeEEEEECC--CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 10 APDGTCLLTNS----NDNHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 10 sp~~~~l~~~~----~d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
.+...++++|+ .++.|.+|+++ +++.. ..... +.. .|..++|+|++++|+++
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~--------------~~~~~-~~~-------~p~~l~~spdg~~l~~~ 67 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESL--------------PLSDA-EVA-------NPSYLIPSADGKFVYSV 67 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEE--------------EEEEE-ECS-------CCCSEEECTTSSEEEEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEE--------------Eeecc-cCC-------CCceEEECCCCCEEEEE
Confidence 34455677774 45689999774 44432 11111 222 34556779999999998
Q ss_pred eCC----CcEEEEeCCC--CeeeE--EEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecc-
Q psy2305 84 SMY----APIHLWDSVG--GEIKA--TYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNL- 152 (334)
Q Consensus 84 ~~d----~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~- 152 (334)
+.+ +.|.+|++.. ++... ....... .+..+++ ++++|+++. ++.+.+|++...+........
T Consensus 68 ~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~-----~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 140 (361)
T 3scy_A 68 NEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA-----DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVI 140 (361)
T ss_dssp ECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS-----CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE
T ss_pred EccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC-----CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeE
Confidence 875 7999998765 54322 2221111 5667777 888887664 789999999753322110000
Q ss_pred cc--------cccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCCc------e-------EeeccCCCCeEEEEEc
Q psy2305 153 KP--------WFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGRP------L-------FFLKGHNGGITHLEFS 210 (334)
Q Consensus 153 ~~--------~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~------~-------~~~~~~~~~i~~~~~~ 210 (334)
.. ..+...+.+++|+|+|+ +++++ ..++.|.+|++..... + .....+...+..++|+
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s 219 (361)
T 3scy_A 141 EFKGSGPDKERQTMPHLHCVRITPDGK-YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN 219 (361)
T ss_dssp ECCCCCSCTTTCSSCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC
T ss_pred EccCCCCCccccCCCcceEEEECCCCC-EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc
Confidence 00 11223468899999999 55554 4588999999875431 1 1122344567899999
Q ss_pred cCCcEEEeeecCCCeEEEEEccCCCcc--ceeeccc-ccCCceEEEEecCCCceEEeeecC--CcEEEEeCC--CCCCCC
Q psy2305 211 SNGILLFSGARKDCEIICWDLRNPGCI--LHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTN--GDLSIWNVN--TSNLPS 283 (334)
Q Consensus 211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~~~~ 283 (334)
|+|++|++++..++.|.+||+.. +.. +..+... ........++|+|+|++|+++..+ +.|.+|++. ++..
T Consensus 220 pdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-- 296 (361)
T 3scy_A 220 SDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-- 296 (361)
T ss_dssp TTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE--
T ss_pred CCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE--
Confidence 99998887773589999999985 432 2222211 112345689999999998776654 899999996 3311
Q ss_pred CCCccccccccceecccccccceeeeccCCCcccceeeEEeee-cceeeee
Q psy2305 284 SPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS-GQITNVK 333 (334)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~-~d~~i~~ 333 (334)
+.+..+.. ...+..++| +|++ ++|++++ .++.+.+
T Consensus 297 --------~~~~~~~~-g~~~~~~~~--spdg----~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 297 --------TKVGYQLT-GIHPRNFII--TPNG----KYLLVACRDTNVIQI 332 (361)
T ss_dssp --------EEEEEEEC-SSCCCEEEE--CTTS----CEEEEEETTTTEEEE
T ss_pred --------EEeeEecC-CCCCceEEE--CCCC----CEEEEEECCCCCEEE
Confidence 23444443 456889999 9999 9888887 5566654
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.92 E-value=2.5e-23 Score=177.33 Aligned_cols=268 Identities=12% Similarity=0.005 Sum_probs=177.3
Q ss_pred EEEcCCCcEEEEeeC-CC--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 7 VDEAPDGTCLLTNSN-DN--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 7 ~~~sp~~~~l~~~~~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
.+|||||++|+.++. ++ .|.+||+.+++.. .+...+...+.. ..|+||++.|+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---------------~lt~~~~~~~~~-------~~~spdg~~l~~~ 98 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---------------QLTEGRGDNTFG-------GFLSPDDDALFYV 98 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---------------ECCCSSCBCSSS-------CEECTTSSEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---------------EeeeCCCCCccc-------eEEcCCCCEEEEE
Confidence 789999999998886 66 4888899887754 222223222222 3458899999999
Q ss_pred eCCCcEEEEeCCCCeeeEEEcCccccccccceeE--EEEcCCCCEEEEe----------------------e-CCcEEEE
Q psy2305 84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYS--LAFSLDGNKIYAG----------------------F-LSEVKIF 138 (334)
Q Consensus 84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~----------------------~-d~~i~i~ 138 (334)
+.++.|++||+.+++....+..+.. .+.. ..++|++++++.. . +..|.+|
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAE-----WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred eCCCeEEEEECCCCcceeeeechhh-----cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 9999999999999887666654332 3333 3458999988732 1 4678999
Q ss_pred EcCCCCCeeeeecccccccccceEEEEEcC-CCCcEEEEeecC------CeEEEEECCCCCceEeeccCC--CCeEEEEE
Q psy2305 139 STDRPGRECVSRNLKPWFRKNIVSAIAINP-VHPDICALGTYS------KIIGLFSDSDGRPLFFLKGHN--GGITHLEF 209 (334)
Q Consensus 139 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~i~~~~~ 209 (334)
|+.+ ++. . .+..+...+..+.|+| +|+ .|+....+ ..|.++|...++. ..+..+. ..+..++|
T Consensus 174 d~~~-g~~-~----~l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 174 DLKT-GES-T----VILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFW 245 (388)
T ss_dssp ETTT-CCE-E----EEEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEE
T ss_pred ECCC-Cce-E----EeecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceE
Confidence 9886 433 2 2445667789999999 998 77766543 3788888765544 4444444 25778999
Q ss_pred ccCCcEEEeeecCCC----eEEEEEccCCCcc--ceeecccccC-CceEEEEecCCCceEEee---------ecCCcEEE
Q psy2305 210 SSNGILLFSGARKDC----EIICWDLRNPGCI--LHTFPRQVST-NQRVYFDLTSCSNYLLSG---------NTNGDLSI 273 (334)
Q Consensus 210 ~~~~~~l~~~~~~d~----~i~iwd~~~~~~~--~~~~~~~~~~-~~~~~~~~s~~~~~l~~~---------~~dg~i~i 273 (334)
+|||+.|+..+..++ .|++||+.+ ++. +..+...... .......|+|||+.|+.. ..+..|++
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 246 VPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp CTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred CCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 999998766541222 499999987 442 2222211000 000112589999988754 44668999
Q ss_pred EeCCCCCCCCCCCccccccccceeccccc-----------ccceeeeccCCCcccceeeEEeeec-ce
Q psy2305 274 WNVNTSNLPSSPYEESVQEPLYKFSAHQD-----------CTNGVRWKHHKFERDLLVADATCSG-QI 329 (334)
Q Consensus 274 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~~s~~~~~~~~~l~t~~~-d~ 329 (334)
||+.++ ....+..+.. .+..++| +||| +.|+.++. +|
T Consensus 325 ~d~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~--spDg----~~l~~~s~~~g 373 (388)
T 3pe7_A 325 FNMKNG-------------TQHRVARHDTSWKVFEGDRQVTHPHPSF--TPDD----KQILFTSDVHG 373 (388)
T ss_dssp EETTTT-------------EEEEEEECCCCCCCBTTBSSTTCCCCEE--CTTS----SEEEEEECTTS
T ss_pred EeccCC-------------ceEEeccccCcccccccccccCCCCccC--CCCC----CEEEEEecCCC
Confidence 999986 2334444444 5788999 9999 88777664 44
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.91 E-value=3e-22 Score=184.45 Aligned_cols=245 Identities=10% Similarity=0.040 Sum_probs=163.6
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
..+++|+|||++++++ |+.|++||+.+++... .+..+... ...+++ ..++|||||++|+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~--~~~~~Spdg~~l~~~ 79 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV--------------FLENSTFD-EFGHSI--NDYSISPDGQFILLE 79 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE--------------EECTTTTT-TCCSCC--CEEEECTTSSEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEE--------------EEechhhh-hhcccc--cceEECCCCCEEEEE
Confidence 5679999999999886 8999999999988652 22222111 100000 113458899999998
Q ss_pred eCC---------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccc
Q psy2305 84 SMY---------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKP 154 (334)
Q Consensus 84 ~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~ 154 (334)
+.+ +.+.+||+.+++... +..+.. .+...+|||||+.|+.+.++.|++|++.. +..... ..
T Consensus 80 ~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~-----~~~~~~~SPdG~~la~~~~~~i~~~~~~~-~~~~~l---t~ 149 (740)
T 4a5s_A 80 YNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPN-----NTQWVTWSPVGHKLAYVWNNDIYVKIEPN-LPSYRI---TW 149 (740)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECC-SSCCCT-----TEEEEEECSSTTCEEEEETTEEEEESSTT-SCCEEC---CS
T ss_pred ECCeeeEEEccceEEEEEECCCCcEEE-cccCCC-----cceeeEECCCCCEEEEEECCeEEEEECCC-CceEEE---cC
Confidence 875 567799999987643 333222 78999999999999988999999999986 333221 22
Q ss_pred cccccce-----------------EEEEEcCCCCcEEEEeecCC------------------------------------
Q psy2305 155 WFRKNIV-----------------SAIAINPVHPDICALGTYSK------------------------------------ 181 (334)
Q Consensus 155 ~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg------------------------------------ 181 (334)
.++...+ ..+.|+|||+ .|+.++.|.
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~ 228 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV 228 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence 3332222 3589999999 888764321
Q ss_pred eEEEEECCC---CC--ceEeec------cCCCCeEEEEEccCCcEEEeeec---CCCeEEEEEccCCCc------cceee
Q psy2305 182 IIGLFSDSD---GR--PLFFLK------GHNGGITHLEFSSNGILLFSGAR---KDCEIICWDLRNPGC------ILHTF 241 (334)
Q Consensus 182 ~i~i~d~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~---~d~~i~iwd~~~~~~------~~~~~ 241 (334)
.|++||+.+ ++ ....+. +|...+..++|+|||+.++.... .+..|++||+.+ ++ ....+
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l 307 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQH 307 (740)
T ss_dssp EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCE
T ss_pred EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEe
Confidence 588899988 63 233343 37778999999999996665431 234799999987 44 12222
Q ss_pred cccccCCce-----EEEEecCCCceEE-eeec-C--CcEEEEeCCCC
Q psy2305 242 PRQVSTNQR-----VYFDLTSCSNYLL-SGNT-N--GDLSIWNVNTS 279 (334)
Q Consensus 242 ~~~~~~~~~-----~~~~~s~~~~~l~-~~~~-d--g~i~iwd~~~~ 279 (334)
....+...+ ....|+|||+.|+ ..+. + ..|++||+.++
T Consensus 308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 111112222 2567999999877 5553 3 46888898875
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.1e-22 Score=182.58 Aligned_cols=231 Identities=10% Similarity=0.015 Sum_probs=167.3
Q ss_pred eceeEEEEEEecccceecCCCcEEEEeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----
Q psy2305 57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---- 131 (334)
Q Consensus 57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---- 131 (334)
...+|++++| +|||+.|++++. ||+++||++.+++..+ +..+.. . .+..++|+|| +.+++++
T Consensus 20 ~~~~~~~~~~-------~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~-~---~~~~~~~spd-~~l~~~~~~~g 86 (582)
T 3o4h_A 20 IAVEKYSLQG-------VVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPI-N---SVLDPHYGVG-RVILVRDVSKG 86 (582)
T ss_dssp HHSCEEEEEE-------EETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCC-S---EECEECTTCS-EEEEEEECSTT
T ss_pred hccchheeec-------CCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccc-c---ccccccCCCC-eEEEEeccCCC
Confidence 3456888777 679999999876 9999999986665544 333220 1 6889999999 6666553
Q ss_pred CCcEEEEEcCC--CCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEE
Q psy2305 132 LSEVKIFSTDR--PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEF 209 (334)
Q Consensus 132 d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 209 (334)
+....+|.++. .+.... .... ..+...+|+|+++..+++...++.+.+||+.+++...... +.. .+++|
T Consensus 87 ~~~~~l~~~~~~~~g~~~~----l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~ 157 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQR----LEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVS 157 (582)
T ss_dssp SCCEEEEEEETTSTTCCEE----CTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEE
T ss_pred CcceEEEEEeccCCCcccc----ccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEE
Confidence 35566766654 343332 1111 1234668888886445555555666699998887655444 333 78999
Q ss_pred ccCCcEEEeeecCC----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC--cEEEEeCCCCCCCC
Q psy2305 210 SSNGILLFSGARKD----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG--DLSIWNVNTSNLPS 283 (334)
Q Consensus 210 ~~~~~~l~~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~ 283 (334)
+|||++|++++ .+ +.|++||+.+ ++ ...+..+ ...+..++|||||++|+++..++ .|++||+.++
T Consensus 158 spDG~~la~~~-~~~~~~~~i~~~d~~~-g~-~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---- 228 (582)
T 3o4h_A 158 DIRGDLIAGLG-FFGGGRVSLFTSNLSS-GG-LRVFDSG--EGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---- 228 (582)
T ss_dssp EEETTEEEEEE-EEETTEEEEEEEETTT-CC-CEEECCS--SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC----
T ss_pred CCCCCEEEEEE-EcCCCCeEEEEEcCCC-CC-ceEeecC--CCccccceECCCCCEEEEccCCCeeEEEEEcCCCC----
Confidence 99999999887 56 7899999986 44 3455544 45678899999999999888888 8999999987
Q ss_pred CCCccccccccceecccccccceee--------eccCCCcccceeeEEeeecceeeee
Q psy2305 284 SPYEESVQEPLYKFSAHQDCTNGVR--------WKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.. .+..|...+..++ | +||| .++++++.|+++++
T Consensus 229 --------~~~-~~~~~~~~~~~~~~~~~~~~~~--spdg----~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 229 --------SVE-DLELPSKDFSSYRPTAITWLGY--LPDG----RLAVVARREGRSAV 271 (582)
T ss_dssp --------CEE-ECCCSCSHHHHHCCSEEEEEEE--CTTS----CEEEEEEETTEEEE
T ss_pred --------cEE-EccCCCcChhhhhhccccceeE--cCCC----cEEEEEEcCCcEEE
Confidence 444 6677777788888 9 9999 99999999998764
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=7.5e-22 Score=165.56 Aligned_cols=228 Identities=11% Similarity=0.055 Sum_probs=165.7
Q ss_pred cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCee
Q psy2305 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGREC 147 (334)
Q Consensus 70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~ 147 (334)
.++++++++++++++.++.|.+||+.+++.+..+..... . .+..++|+|++++++++ . ++.|.+||+.+ ++..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~---~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~ 78 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-F---GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNT 78 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-C---SSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-C---CCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEE
Confidence 456688999999999999999999999998877764321 0 36789999999877644 4 79999999986 4444
Q ss_pred eeeccccccc-----ccceEEEEEcCCCCcEEEEeecC------------CeEEEEECCCCCc---eEeeccCCCCeEEE
Q psy2305 148 VSRNLKPWFR-----KNIVSAIAINPVHPDICALGTYS------------KIIGLFSDSDGRP---LFFLKGHNGGITHL 207 (334)
Q Consensus 148 ~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~i~~~ 207 (334)
... ...+ ...+.+++|+|+|+ ++++++.+ +.|.+||+.+++. +..+. +...+.++
T Consensus 79 ~~~---~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 153 (349)
T 1jmx_B 79 FHA---NLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLM 153 (349)
T ss_dssp EEE---ESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCE
T ss_pred EEE---EcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccce
Confidence 321 1111 23478899999999 88888765 8999999988543 33444 33468899
Q ss_pred EEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc------------------------------------------
Q psy2305 208 EFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV------------------------------------------ 245 (334)
Q Consensus 208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------------------------ 245 (334)
+|+|+|+ +++++ .+ |++||+.+ ++....+....
T Consensus 154 ~~s~dg~-l~~~~-~~--i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 154 RAADDGS-LYVAG-PD--IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EECTTSC-EEEES-SS--EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred eECCCCc-EEEcc-Cc--EEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 9999999 66554 33 99999986 54444433211
Q ss_pred ------------------------cCCceEEEEecC-CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305 246 ------------------------STNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH 300 (334)
Q Consensus 246 ------------------------~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (334)
.......++|+| ++++++++ ++.|.+||+.++ +.+..+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~------------~~~~~~~~- 293 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR------------KLIKAANL- 293 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT------------EEEEEEEC-
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC------------eEEEEEcC-
Confidence 001234567889 99999888 889999999987 45555543
Q ss_pred ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
...+..++| +|++ ++|++++.++.+.+
T Consensus 294 ~~~~~~~~~--s~dg----~~l~~~~~~~~v~v 320 (349)
T 1jmx_B 294 DHTYYCVAF--DKKG----DKLYLGGTFNDLAV 320 (349)
T ss_dssp SSCCCEEEE--CSSS----SCEEEESBSSEEEE
T ss_pred CCCccceEE--CCCC----CEEEEecCCCeEEE
Confidence 345789999 9999 88888888887764
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=2.7e-21 Score=163.46 Aligned_cols=241 Identities=10% Similarity=0.022 Sum_probs=161.6
Q ss_pred ccceecCCCcEEEEeeCCCcEEEEeCC-CCeeeEEEcCccccccccceeEEEEcCCCCE--EEEe--------------e
Q psy2305 69 KTSSIDGFTSYFLCSSMYAPIHLWDSV-GGEIKATYRPYNQVDEVTHAYSLAFSLDGNK--IYAG--------------F 131 (334)
Q Consensus 69 ~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~--------------~ 131 (334)
..++++|++++|++++.+ .|.+|++. +++.......... . .+..++|+|+|++ ++++ .
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-G---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-S---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-C---CCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 345668999999988887 89999987 7776543321101 1 2456899999994 4443 4
Q ss_pred CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-cCCeEEEEECC-CCCce--Eeec--cCCCCeE
Q psy2305 132 LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDS-DGRPL--FFLK--GHNGGIT 205 (334)
Q Consensus 132 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~--~~~~~i~ 205 (334)
++.+.+|++...+............+...+.+++|+|+|+ +++++. .++.|++||+. +++.. ..+. .|...+.
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 7889999997535443221100012456789999999999 777665 36799999998 66643 2333 2356789
Q ss_pred EEEEccCCcEEEeeecCCCeEEEEEccCC-Cccc---eeecc---cccC-C-------ceEEEE-ecCCCceEEeeecC-
Q psy2305 206 HLEFSSNGILLFSGARKDCEIICWDLRNP-GCIL---HTFPR---QVST-N-------QRVYFD-LTSCSNYLLSGNTN- 268 (334)
Q Consensus 206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~-~~~~---~~~~~---~~~~-~-------~~~~~~-~s~~~~~l~~~~~d- 268 (334)
.++|+|+|++|++++..++.+.+|++... ++.. ..+.. .... . .+..++ |+|||++|++++.+
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 99999999999888734789999987631 3321 11211 1001 1 467899 99999998876543
Q ss_pred C-----cEEEEeCC-CCCCCCCCCccccccccc---eecccccccceeeeccCC---CcccceeeEEeeecc-eeeee
Q psy2305 269 G-----DLSIWNVN-TSNLPSSPYEESVQEPLY---KFSAHQDCTNGVRWKHHK---FERDLLVADATCSGQ-ITNVK 333 (334)
Q Consensus 269 g-----~i~iwd~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~s~---~~~~~~~~l~t~~~d-~~i~~ 333 (334)
+ .|.+|++. ++ +... ....+...+..++| +| ++ ++|++++.+ +.|.+
T Consensus 277 ~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~~~~~~~~a~--sp~~~dg----~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCG------------SIEKQLFLSPTPTSGGHSNAV--SPCPWSD----EWMAITDDQEGWLEI 336 (365)
T ss_dssp STTSCCEEEEEEECTTS------------CEEEEEEEEECSSCCTTCCCE--EECTTCT----TEEEEECSSSCEEEE
T ss_pred CCCCCCeEEEEEECCCC------------CEEEeeeeeecCCCCccccee--cCCCcCC----CEEEEEEcCCCeEEE
Confidence 2 89999996 44 2221 13334456789999 99 89 899888764 66654
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=6.3e-22 Score=181.97 Aligned_cols=274 Identities=11% Similarity=0.033 Sum_probs=177.4
Q ss_pred eeEEEEcCCCcEEEEeeC---------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec
Q psy2305 4 EEDVDEAPDGTCLLTNSN---------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID 74 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~---------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s 74 (334)
|.+++|||||++||+++. ++.|++||+.+++... ...+ ...+..++| |
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~------------~~~l----~~~~~~~~~-------S 118 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR------------GNEL----PRPIQYLCW-------S 118 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------SSCC----CSSBCCEEE-------C
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc------------ceec----CcccccceE-------C
Confidence 789999999999998876 7899999999887520 0011 123444455 8
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccc-----cc---------cceeEEEEcCCCCEEEEee-C-C-----
Q psy2305 75 GFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVD-----EV---------THAYSLAFSLDGNKIYAGF-L-S----- 133 (334)
Q Consensus 75 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~---------~~v~~~~~~~~~~~l~~~~-d-~----- 133 (334)
|||+.|+++. ++.|++|++.+++....... .+.. .. ....+++|+|||++|++++ | +
T Consensus 119 PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~-~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~ 196 (719)
T 1z68_A 119 PVGSKLAYVY-QNNIYLKQRPGDPPFQITFN-GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVI 196 (719)
T ss_dssp SSTTCEEEEE-TTEEEEESSTTSCCEECCCC-CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEE
T ss_pred CCCCEEEEEE-CCeEEEEeCCCCCcEEEecC-CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceE
Confidence 8999999886 78999999988876543211 1111 00 0125899999999999765 4 2
Q ss_pred ----------------------------cEEEEEcCCCCCee---ee-ecccccccccceEEEEEcCCCCcEEEEeecC-
Q psy2305 134 ----------------------------EVKIFSTDRPGREC---VS-RNLKPWFRKNIVSAIAINPVHPDICALGTYS- 180 (334)
Q Consensus 134 ----------------------------~i~i~d~~~~~~~~---~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 180 (334)
.|++||+.+ +... .. .+..+.+|...+..++|+||++ ++++....
T Consensus 197 ~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~ 274 (719)
T 1z68_A 197 AYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRV 274 (719)
T ss_dssp EEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESS
T ss_pred EeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccc
Confidence 788999885 3321 10 0012346778899999999987 77664332
Q ss_pred ---CeEEEEE----CCCCCceEee----ccCCCCeE-----EEEEccCCcEEEe--eecCCC--eEEEEEccCCCcccee
Q psy2305 181 ---KIIGLFS----DSDGRPLFFL----KGHNGGIT-----HLEFSSNGILLFS--GARKDC--EIICWDLRNPGCILHT 240 (334)
Q Consensus 181 ---g~i~i~d----~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~~~d~--~i~iwd~~~~~~~~~~ 240 (334)
..|.+|| ..+++....+ .+|.+.+. .+.|+|||+.|+. .. .++ .|.+||+.. +. ...
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~g~~~l~~~~~~~-~~-~~~ 351 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD-KDGYKHIHYIKDTV-EN-AIQ 351 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC-TTSCEEEEEESSCS-TT-CEE
T ss_pred cCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc-cCCceEEEEEECCC-Cc-eEe
Confidence 3588999 8777665555 36666666 7899999996654 33 455 466666654 33 444
Q ss_pred ecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCC--CCCCCCCCcccccccc-ceecccccccceeeeccC
Q psy2305 241 FPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNT--SNLPSSPYEESVQEPL-YKFSAHQDCTNGVRWKHH 312 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~s 312 (334)
+..+ ...+..+.++ +++.|+..+.+ +..++|.+.. +... .+.+ ..+.+|...+..+.| +
T Consensus 352 lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~~~l~~~~~~~~~~~~~~~~--s 418 (719)
T 1z68_A 352 ITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS--------KKCVTCHLRKERCQYYTASF--S 418 (719)
T ss_dssp CSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC--------EEESSTTTTTTTBCBEEEEE--C
T ss_pred cccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC--------ceeccCccCCCCCceEEEEE--C
Confidence 4432 3335555566 77766655544 7888998764 2100 0111 112235566788999 9
Q ss_pred CCcccceeeEEe
Q psy2305 313 KFERDLLVADAT 324 (334)
Q Consensus 313 ~~~~~~~~~l~t 324 (334)
|++ ++++.
T Consensus 419 ~dg----~~l~~ 426 (719)
T 1z68_A 419 DYA----KYYAL 426 (719)
T ss_dssp GGG----SSEEE
T ss_pred CCC----CEEEE
Confidence 999 77664
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.88 E-value=4.7e-19 Score=144.53 Aligned_cols=247 Identities=12% Similarity=0.135 Sum_probs=172.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
..+.+++++|+|+++++...++.|++|+.. ++....+..... ...+...+..+++. .+++++++
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~---------~~~~~~~p~~i~~~------~~~g~l~v 93 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK---------RDSQLLYPNRVAVV------RNSGDIIV 93 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS---------STTCBSSEEEEEEE------TTTTEEEE
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC---------CcccccCceEEEEE------cCCCeEEE
Confidence 457899999999988888889999999987 333311110000 00011234444431 35777666
Q ss_pred EeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 82 CSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 82 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
+... ++.|.+|| .+++.+..+.... .. .+..++++|+|+++++.. ++.|.+||.. ++..... ....+..
T Consensus 94 ~~~~~~~~i~~~d-~~g~~~~~~~~~~-~~---~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~--~~~~~~~ 164 (286)
T 1q7f_A 94 TERSPTHQIQIYN-QYGQFVRKFGATI-LQ---HPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKF--GCSKHLE 164 (286)
T ss_dssp EECGGGCEEEEEC-TTSCEEEEECTTT-CS---CEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEE--ECTTTCS
T ss_pred EcCCCCCEEEEEC-CCCcEEEEecCcc-CC---CceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEe--CCCCccC
Confidence 6643 78999999 5677776664321 11 678999999998777765 7899999975 4444321 1123445
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC--CCCeEEEEEccCCcEEEeeecCCC-eEEEEEccCCCc
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH--NGGITHLEFSSNGILLFSGARKDC-EIICWDLRNPGC 236 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~d~-~i~iwd~~~~~~ 236 (334)
.+.+++++|+|+ ++++...++.|++||. +++.+..+..+ ...+..++++|+|+++++.. .++ .|.+||.. ++
T Consensus 165 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~--g~ 239 (286)
T 1q7f_A 165 FPNGVVVNDKQE-IFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQD--GQ 239 (286)
T ss_dssp SEEEEEECSSSE-EEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTT--SC
T ss_pred CcEEEEECCCCC-EEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCC--CC
Confidence 689999999998 8887778999999997 56666666433 36789999999998888777 675 99999964 55
Q ss_pred cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
.+..+..+.....+..++++|+|+++++ +.++.|++|++...
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 5666655433445678999999987777 57899999998764
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.88 E-value=1.2e-21 Score=167.24 Aligned_cols=263 Identities=10% Similarity=-0.050 Sum_probs=174.0
Q ss_pred eeEEEEcCCCcEEEEeeCC---CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 4 EEDVDEAPDGTCLLTNSND---NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
+..++|||||++|+..... ..|.+|++.+++.. .+..+..... ..+.|+|||+.|
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---------------~l~~~~~~~~-------~~~~~spdg~~l 95 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---------------QLTEGKGDNT-------FGGFISTDERAF 95 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---------------ECCCSSCBCT-------TTCEECTTSSEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---------------EeecCCCCcc-------ccceECCCCCEE
Confidence 5678999999998876543 47888898887653 1221111111 113458899999
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeE-------------------EEEcCCCCEEEEe------eCCcE
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYS-------------------LAFSLDGNKIYAG------FLSEV 135 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~------~d~~i 135 (334)
+.++.++.|.+||+.+++.......+.. .... +.|+|+++.++.. .+..|
T Consensus 96 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 96 FYVKNELNLMKVDLETLEEQVIYTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred EEEEcCCcEEEEECCCCCcEEEEecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 9999888999999988876655543221 1111 3568888877642 25689
Q ss_pred EEEEcCCCCCeeeeecccccccccceEEEEEcC-CCCcEEEEeecC------CeEEEEECCCCCceEeeccC--CCCeEE
Q psy2305 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP-VHPDICALGTYS------KIIGLFSDSDGRPLFFLKGH--NGGITH 206 (334)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~~i~~ 206 (334)
.+||+.+ ++... +..+...+..+.|+| ++. .|+..+.+ ..|.+||+..++.. .+..+ ...+..
T Consensus 171 ~~~d~~~-g~~~~-----~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 171 IKVDIET-GELEV-----IHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTH 242 (396)
T ss_dssp EEEETTT-CCEEE-----EEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEE
T ss_pred EEEECCC-CcEEe-----eccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccc
Confidence 9999985 43322 334667789999999 777 66655443 36889998765543 33333 235788
Q ss_pred EEEccCCcEEEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecC-CCceEEeee--------------
Q psy2305 207 LEFSSNGILLFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS-CSNYLLSGN-------------- 266 (334)
Q Consensus 207 ~~~~~~~~~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~-------------- 266 (334)
++|+|+|++|+..+ .+ +.|++||+.+ ++... +... .. .. +.|+| +|+++++++
T Consensus 243 ~~~spdg~~l~~~~-~~~~~~~~~l~~~d~~~-g~~~~-l~~~--~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 243 EFWIPDGSAMAYVS-YFKGQTDRVIYKANPET-LENEE-VMVM--PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEECTTSSCEEEEE-EETTTCCEEEEEECTTT-CCEEE-EEEC--CS-EE-EEEECSSSSEEEEEECCC----------C
T ss_pred eEECCCCCEEEEEe-cCCCCccceEEEEECCC-CCeEE-eeeC--CC-CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 99999999887775 33 4599999986 44322 2211 11 12 77999 999888754
Q ss_pred --cCCcEEEEeCCCCCCCCCCCccccccccceeccccc-----------ccceeeeccCCCcccceeeEEeeec
Q psy2305 267 --TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-----------CTNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 267 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
.++.|++||+.+++ ...+..+.. .+..++| +|++ +.|+.++.
T Consensus 316 ~~~~~~i~~~d~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~--s~dg----~~l~~~s~ 370 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKS-------------AQKLCKHSTSWDVLDGDRQITHPHPSF--TPND----DGVLFTSD 370 (396)
T ss_dssp CCCCCEEEEEETTTTB-------------CCEEEECCCCCCCBTTBSSTTCCCCEE--CTTS----SEEEEEEC
T ss_pred cCCCCcEEEEecccCc-------------eEEccCCCCccccccccccCCCCCceE--ccCC----CeEEEEec
Confidence 34789999998863 223433333 2567899 9999 88877765
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.87 E-value=2e-19 Score=149.66 Aligned_cols=253 Identities=11% Similarity=0.082 Sum_probs=176.6
Q ss_pred CCceeEEEEcCCCcEEEEeeCC------------------------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeee
Q psy2305 1 MDIEEDVDEAPDGTCLLTNSND------------------------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK 56 (334)
Q Consensus 1 ~d~V~~~~~sp~~~~l~~~~~d------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (334)
+..|.+++++|+|+++++...+ +.|.+||..+++... .+...
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~--------------~~~~~ 88 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ--------------SSGKN 88 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE--------------EECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe--------------ccCCC
Confidence 4578999999999988887776 478999988777541 11111
Q ss_pred eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe-eeEEEcCccc----cccccceeEEEEcC-CCCEEEEe
Q psy2305 57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE-IKATYRPYNQ----VDEVTHAYSLAFSL-DGNKIYAG 130 (334)
Q Consensus 57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~ 130 (334)
+-.... .++++++|+++++...++.|++||..... .+..+..... ......+..++++| ++.++++.
T Consensus 89 ~~~~p~-------gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d 161 (329)
T 3fvz_A 89 LFYLPH-------GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161 (329)
T ss_dssp TCSSEE-------EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred ccCCce-------EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence 112233 35558899988888888999999975442 4555532110 11122678999999 78888877
Q ss_pred e--CCcEEEEEcCCCCCeeeeecccc------cccccceEEEEEcCC-CCcEEEEeecCCeEEEEECCCCCceEeec--c
Q psy2305 131 F--LSEVKIFSTDRPGRECVSRNLKP------WFRKNIVSAIAINPV-HPDICALGTYSKIIGLFSDSDGRPLFFLK--G 199 (334)
Q Consensus 131 ~--d~~i~i~d~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~ 199 (334)
+ ++.|++|+.. +.........- .++-.....++++|+ +. ++++...++.|++||..+++.+..+. .
T Consensus 162 ~~~~~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~-l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 162 GYCNSRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ-LCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp CSSCCEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE-EEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred CCCCCeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE-EEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 3 7899999954 55544311000 122344889999999 55 77777888999999998888888773 4
Q ss_pred CCCCeEEEEEcc------CCcEEEeeecCCCeEEEEEccCCCccceeecc-cccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305 200 HNGGITHLEFSS------NGILLFSGARKDCEIICWDLRNPGCILHTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLS 272 (334)
Q Consensus 200 ~~~~i~~~~~~~------~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 272 (334)
+...+..++|+| +|+.+++.. .+..|++||..+ ++.+..+.. ......+..++++|+|.++++...+++|+
T Consensus 239 ~~~~~~~~~~~pg~~~~~~g~~~v~~~-~~~~v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIPGFLFAVNGKPYFGDQ-EPVQGFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEETTEEEEEECCCCTTCS-CCCCEEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecCCEEEEeCCCEEeccC-CCcEEEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 566788999999 333333333 456899999987 666666632 11244577899999998888888899999
Q ss_pred EEeCCCC
Q psy2305 273 IWNVNTS 279 (334)
Q Consensus 273 iwd~~~~ 279 (334)
+|++...
T Consensus 317 ~~~~~~~ 323 (329)
T 3fvz_A 317 KFTLTEK 323 (329)
T ss_dssp EEEEEEC
T ss_pred EEeCCcc
Confidence 9998753
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=6.7e-20 Score=168.82 Aligned_cols=234 Identities=11% Similarity=0.001 Sum_probs=156.8
Q ss_pred eecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C---------CcEEEEEcC
Q psy2305 72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L---------SEVKIFSTD 141 (334)
Q Consensus 72 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------~~i~i~d~~ 141 (334)
.|+||+++++++ |+.|++||+.+++....+..+...........++|||||++|+.++ + +.+.+||+.
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~ 100 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence 347899988886 8999999999999877777654322111234589999999999776 3 667899998
Q ss_pred CCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCCe----------------
Q psy2305 142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGI---------------- 204 (334)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i---------------- 204 (334)
+ ++ .. .+..+...+..++|||||+ .||.+ .++.|++||+.+++..+.. .++...+
T Consensus 101 ~-~~-~~----~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 101 K-RQ-LI----TEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp T-TE-EC----CSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred C-Cc-EE----EcccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 6 33 33 3566777899999999999 88877 5789999999887654422 2332222
Q ss_pred -EEEEEccCCcEEEeeecCCC-----------------------------------eEEEEEccC---CCc-cceeeccc
Q psy2305 205 -THLEFSSNGILLFSGARKDC-----------------------------------EIICWDLRN---PGC-ILHTFPRQ 244 (334)
Q Consensus 205 -~~~~~~~~~~~l~~~~~~d~-----------------------------------~i~iwd~~~---~~~-~~~~~~~~ 244 (334)
..+.|||||++|+..+..+. .|++||+.+ ... ....+...
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 34899999999988751111 477788765 311 12223211
Q ss_pred ----ccCCceEEEEecCCCceEEeeec----CCcEEEEeCCCCCCCCCCCcccccccccee--cccccccc-----eeee
Q psy2305 245 ----VSTNQRVYFDLTSCSNYLLSGNT----NGDLSIWNVNTSNLPSSPYEESVQEPLYKF--SAHQDCTN-----GVRW 309 (334)
Q Consensus 245 ----~~~~~~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~-----~~~~ 309 (334)
.+...+..++|+|||+.++.... +..|.+||+.+++.. ........+ ..|...|. .+.|
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~------~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR------WNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE------EEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc------cceeEEEEeeeccCCceEccCcCCCceE
Confidence 13456778999999997665533 347999999987300 000112222 34555554 7899
Q ss_pred ccCCCcccceeeEE-eeec
Q psy2305 310 KHHKFERDLLVADA-TCSG 327 (334)
Q Consensus 310 ~~s~~~~~~~~~l~-t~~~ 327 (334)
+||| +.|+ ..+.
T Consensus 327 --spDG----~~l~~~~s~ 339 (740)
T 4a5s_A 327 --TLDG----NSFYKIISN 339 (740)
T ss_dssp --CTTS----SEEEEEEEC
T ss_pred --cCCC----CEEEEEEEc
Confidence 9999 8776 5553
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.86 E-value=4e-19 Score=147.86 Aligned_cols=242 Identities=12% Similarity=0.052 Sum_probs=173.1
Q ss_pred eeEEEEEEecccceecCCCcEEEEeeCC------------------------CcEEEEeCCCCeeeEEEcCccccccccc
Q psy2305 59 GIIYDYVWYPKTSSIDGFTSYFLCSSMY------------------------APIHLWDSVGGEIKATYRPYNQVDEVTH 114 (334)
Q Consensus 59 ~~v~~~~~~~~~~~~s~~~~~l~~~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 114 (334)
+.+.++++ +|+|+++++...+ +.|.+||..+++....+.. .... .
T Consensus 24 ~~v~~va~-------d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~---~ 92 (329)
T 3fvz_A 24 GQVSGVAL-------DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLFY---L 92 (329)
T ss_dssp SCEEEEEE-------CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTCS---S
T ss_pred CCceEEEE-------CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-CccC---C
Confidence 44555555 8899988887766 4799999988888766542 1111 6
Q ss_pred eeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc-----cccccceEEEEEcC-CCCcEEEEee-cCCeEEEE
Q psy2305 115 AYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP-----WFRKNIVSAIAINP-VHPDICALGT-YSKIIGLF 186 (334)
Q Consensus 115 v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~l~~~~-~dg~i~i~ 186 (334)
+..++++|+|+++++.. ++.|++||.......+....... ..+......++++| ++. ++++.+ .++.|++|
T Consensus 93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQF 171 (329)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEE
T ss_pred ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEE
Confidence 78999999999777776 89999999873111233210000 23445688999999 777 777775 68999999
Q ss_pred ECCCCCceEeeccC----------CCCeEEEEEccC-CcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEe
Q psy2305 187 SDSDGRPLFFLKGH----------NGGITHLEFSSN-GILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL 255 (334)
Q Consensus 187 d~~~~~~~~~~~~~----------~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (334)
| .+++.+..+... -.....++++|+ +.++++.. .++.|++||..+ ++.+..+........+..+++
T Consensus 172 ~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~-~~~~I~~~~~~~-G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 172 S-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR-ENGRIQCFKTDT-KEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp C-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-TTTEEEEEETTT-CCEEEEECCTTTTTCEEEEEE
T ss_pred c-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-CCCEEEEEECCC-CcEEEEEeccccCCCcceeee
Confidence 9 567777766422 234789999998 66666665 799999999986 676777754444556778889
Q ss_pred cC------CCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee---cccccccceeeeccCCCcccceeeEEeee
Q psy2305 256 TS------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF---SAHQDCTNGVRWKHHKFERDLLVADATCS 326 (334)
Q Consensus 256 s~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~s~~~~~~~~~l~t~~ 326 (334)
+| +|+.+++...+..|++|++.++ +.+..+ .++...+.++++ +|+| .++++..
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g------------~~~~~~~~~~~~~~~p~~ia~--~~dG----~lyvad~ 310 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSG------------EIIDVFKPVRKHFDMPHDIVA--SEDG----TVYIGDA 310 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTC------------CEEEEECCSSSCCSSEEEEEE--CTTS----EEEEEES
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCC------------eEEEEEcCCCCccCCeeEEEE--CCCC----CEEEEEC
Confidence 99 3333333344568999999988 555555 355667899999 9999 9999998
Q ss_pred cceeeee
Q psy2305 327 GQITNVK 333 (334)
Q Consensus 327 ~d~~i~~ 333 (334)
.+++|.+
T Consensus 311 ~~~~I~~ 317 (329)
T 3fvz_A 311 HTNTVWK 317 (329)
T ss_dssp SSCCEEE
T ss_pred CCCEEEE
Confidence 8888764
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.86 E-value=1.4e-19 Score=164.84 Aligned_cols=280 Identities=8% Similarity=0.014 Sum_probs=176.5
Q ss_pred CceeEEEEcCCCcEEEEe--eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEE---------EEEEeccc
Q psy2305 2 DIEEDVDEAPDGTCLLTN--SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIY---------DYVWYPKT 70 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~--~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~ 70 (334)
..|..++|++++-+++.. +.++...||....+.... .+..+ ...+. ...|.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~l~~~-~~~~~~~~~~~~~~~~~~~--- 85 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE--------------SALPA-PWNVRNRVFEYSGFPWAGV--- 85 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE--------------ESSCT-TCCBCCCGGGTCCCCEEEE---
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc--------------eeCCC-CccccccccccCCccceee---
Confidence 357889999887677766 568899999864333221 12211 11222 22331
Q ss_pred ceecCCCcE-EEEeeC-CCcEEEEeCC--C-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----------Cc
Q psy2305 71 SSIDGFTSY-FLCSSM-YAPIHLWDSV--G-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----------SE 134 (334)
Q Consensus 71 ~~~s~~~~~-l~~~~~-d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----------~~ 134 (334)
.||||+. |+.++. +..|.++++. . ++ ...+.......+...+..++|+|||+.|++++ + ..
T Consensus 86 --~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 86 --PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp --CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred --eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 1489998 776653 5667777765 2 43 44444321000111678999999999999765 5 58
Q ss_pred EEEEEcCCCC----Ceeeeeccccc-ccccceEEEEEcCCCCcEEEEeecC--------CeEEEEECC-CC---CceEee
Q psy2305 135 VKIFSTDRPG----RECVSRNLKPW-FRKNIVSAIAINPVHPDICALGTYS--------KIIGLFSDS-DG---RPLFFL 197 (334)
Q Consensus 135 i~i~d~~~~~----~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~ 197 (334)
|.+||+.... .... .+. .+...+..++|+|||+ .|+.++.+ ..|++||+. ++ +.....
T Consensus 163 i~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAVR----ELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEETTSTTTTCGGGSE----ESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEECCCCccccCCcee----EEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 9999988410 3333 234 4556788899999999 88877654 379999998 56 344444
Q ss_pred ccCCCCeEEEEEccCCcEEEeeecCCC--eEEEEEccCCCccceeecccccC------CceEEEEecCCCceEEeeecCC
Q psy2305 198 KGHNGGITHLEFSSNGILLFSGARKDC--EIICWDLRNPGCILHTFPRQVST------NQRVYFDLTSCSNYLLSGNTNG 269 (334)
Q Consensus 198 ~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~l~~~~~dg 269 (334)
.++...+..+.|+|||++++++. .++ .|.+||+.. ++.......+... ..+..++|+|+++++++++. +
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATD-RTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEEC-TTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred CCCCceEcceEECCCCeEEEEEC-CCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 45578899999999999777777 688 555555544 3322222211111 00345788999999999988 9
Q ss_pred cEEEE--eCCCCCCCCCCCccccccccceeccccccccee-eeccCCCcccceeeEEeeecce
Q psy2305 270 DLSIW--NVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV-RWKHHKFERDLLVADATCSGQI 329 (334)
Q Consensus 270 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~s~~~~~~~~~l~t~~~d~ 329 (334)
.++|| |+.++ .+..+..+...+..+ ++ +++. -++++++.+.
T Consensus 315 ~~~l~~~d~~~~-------------~~~~l~~~~~~~~~~~s~--~~~~----~~~~~~~~~~ 358 (662)
T 3azo_A 315 AAVLGILDPESG-------------ELVDAAGPWTEWAATLTV--SGTR----AVGVAASPRT 358 (662)
T ss_dssp SCEEEEEETTTT-------------EEEECCSSCCEEEEEEEE--ETTE----EEEEEEETTE
T ss_pred ccEEEEEECCCC-------------cEEEecCCCCeEEEEEec--CCCE----EEEEEcCCCC
Confidence 99999 55554 345666666677776 66 5544 4455555553
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.86 E-value=4.8e-19 Score=149.11 Aligned_cols=266 Identities=11% Similarity=0.089 Sum_probs=178.3
Q ss_pred EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
.++|+|||++|+++. .++.|.+||..+.+... .+....... ..--.|..++++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~--------------~i~~~~~~~--~~g~~p~~i~~sp 117 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK--------------EISLPPKRV--QGLNYDGLFRQTT 117 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE--------------EEEECTTBC--CBCCCGGGEEECT
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE--------------EEEcCcccc--ccCCCcceEEECC
Confidence 789999999999886 36789999998877652 222110000 0001356678899
Q ss_pred CCcEEEEeeC--CCcEEEEeCCCCeeeEE-EcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305 76 FTSYFLCSSM--YAPIHLWDSVGGEIKAT-YRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 76 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~ 150 (334)
+|++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.+ ||.+.+|++...++.....
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~ 190 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS 190 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence 9999998864 57899999999988777 5431 23346678876 4455554 8999999987544433110
Q ss_pred c--ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce--Eeecc------C----CCCeEEEEEccCCcEE
Q psy2305 151 N--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL--FFLKG------H----NGGITHLEFSSNGILL 216 (334)
Q Consensus 151 ~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~------~----~~~i~~~~~~~~~~~l 216 (334)
. ..+.....++ .+.+++++. .++..+.++.|.++|+...... ..+.. + ......++|+|+++.+
T Consensus 191 ~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l 268 (361)
T 2oiz_A 191 RSKQMFSVKDDPI-FIAPALDKD-KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM 268 (361)
T ss_dssp ECCCCSCTTTSCB-CSCCEECSS-EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred cccceEcCCCCce-EEEecccCC-EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence 0 0111222222 333467777 6666778899999998655321 11110 0 0111237899999888
Q ss_pred EeeecC-----------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCC
Q psy2305 217 FSGARK-----------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285 (334)
Q Consensus 217 ~~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 285 (334)
+++. . .+.|.+||+.+ .+.+..+..+ . ...++|+|+|++|++++. +.|.+||..++.+
T Consensus 269 yv~~-~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l---- 337 (361)
T 2oiz_A 269 YVFM-HPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP---- 337 (361)
T ss_dssp EEEE-ESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC----
T ss_pred EEEE-ccCCCcccccCCCceEEEEECCC-CcEEEEEecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc----
Confidence 8765 3 35899999998 7777777654 2 778999999999998886 9999999998732
Q ss_pred CccccccccceecccccccceeeeccCCCc
Q psy2305 286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFE 315 (334)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~ 315 (334)
+.+..+..+......+++ +|+|
T Consensus 338 ------~~~~~i~~~G~~P~~~~~--~p~G 359 (361)
T 2oiz_A 338 ------KLLRTIEGAAEASLQVQF--HPVG 359 (361)
T ss_dssp ------EEEEEETTSCSSEEEEEE--CCCS
T ss_pred ------eeeEEeccCCCCcEEEEe--cCCC
Confidence 345555555667789999 9998
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.86 E-value=8e-19 Score=146.35 Aligned_cols=272 Identities=9% Similarity=0.017 Sum_probs=181.6
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.+++|+|++..++..+.++.++.|. .+.. ..+.. +...+.+++| +++++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~~~~-~~~~~~~~~~-------~~~g~l~~~ 61 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT---AEPW--------------LEISK-KGLQLEGLNF-------DRQGQLFLL 61 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE--------------EEEES-SCCCEEEEEE-------CTTSCEEEE
T ss_pred ccceeeecCCccceeEEeecccCcccc---ccee--------------EEEec-cCccccCcEE-------CCCCCEEEE
Confidence 477889999988887777888888882 2221 12222 2233455555 779998888
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcCCCCCeeeeeccccccc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
+..++.|.+||..+++.......... .+.+++++|+|+++++.. + +.|.+||... +...... ....+
T Consensus 62 ~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~--~~~~~ 133 (333)
T 2dg1_A 62 DVFEGNIFKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDII--EDLST 133 (333)
T ss_dssp ETTTCEEEEECTTTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEE--CSSSS
T ss_pred ECCCCEEEEEeCCCCcEEEEeeCCCC-----CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEE--ccCcc
Confidence 88889999999988776554422222 789999999999887765 4 5899999875 3322110 11123
Q ss_pred ccceEEEEEcCCCCcEEEEeec------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305 158 KNIVSAIAINPVHPDICALGTY------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~ 231 (334)
...+.+++++|+|+ ++++... .+.|..+|..+++... +..+...+..++|+|+|+.|+.+...++.|.+||+
T Consensus 134 ~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 134 AYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp CCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence 45789999999998 6665543 3567777765554433 33334457899999999876655425789999999
Q ss_pred cCCCccceeec-----ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc----
Q psy2305 232 RNPGCILHTFP-----RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD---- 302 (334)
Q Consensus 232 ~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 302 (334)
...+.....+. .......+..++++++|+++++...++.|.+||.. + +.+..+..+..
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g------------~~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G------------YPIGQILIPGRDEGH 278 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S------------CEEEEEECTTGGGTC
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-C------------CEEEEEEcCCCcccc
Confidence 64333322211 00011356678999999988887778899999985 3 34444433322
Q ss_pred --ccceeeeccCCCcccceeeEEeeecc
Q psy2305 303 --CTNGVRWKHHKFERDLLVADATCSGQ 328 (334)
Q Consensus 303 --~i~~~~~~~s~~~~~~~~~l~t~~~d 328 (334)
.+.+++| +|++ +.|+.++.+
T Consensus 279 ~~~~~~~~~--~~dg----~~L~v~~~~ 300 (333)
T 2dg1_A 279 MLRSTHPQF--IPGT----NQLIICSND 300 (333)
T ss_dssp SCBCCEEEE--CTTS----CEEEEEEEC
T ss_pred ccCcceEEE--CCCC----CEEEEEeCc
Confidence 6899999 9998 777665554
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=3e-18 Score=139.74 Aligned_cols=233 Identities=12% Similarity=0.116 Sum_probs=166.7
Q ss_pred cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccc-cccccceeEEEE-cCCCCEEEEee--CCcEEEEEcCCCCC
Q psy2305 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQ-VDEVTHAYSLAF-SLDGNKIYAGF--LSEVKIFSTDRPGR 145 (334)
Q Consensus 70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~l~~~~--d~~i~i~d~~~~~~ 145 (334)
.++++++++++++...++.|.+||.. ++....+..... ......+..+++ .++++++++.. ++.|.+||.. ++
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~ 110 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQ 110 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SC
T ss_pred eEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--Cc
Confidence 34558899988888888999999976 666666643110 111126789999 57777777663 7899999944 55
Q ss_pred eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEEEccCCcEEEeeecCC
Q psy2305 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLEFSSNGILLFSGARKD 223 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d 223 (334)
..... ...+...+.+++++|+|+ ++++...++.|.+||. +++.+..+. .+...+..++++|+|+++++.. .+
T Consensus 111 ~~~~~---~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~ 184 (286)
T 1q7f_A 111 FVRKF---GATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RA 184 (286)
T ss_dssp EEEEE---CTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GG
T ss_pred EEEEe---cCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-CC
Confidence 54431 123445788999999998 8887778899999995 466665553 3445689999999999777766 68
Q ss_pred CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC-cEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305 224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302 (334)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (334)
+.|++||.. +..+..+........+..++++++|+++++...++ .|.+|+... +.+..+..+..
T Consensus 185 ~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-------------~~~~~~~~~~~ 249 (286)
T 1q7f_A 185 HCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-------------QLISALESKVK 249 (286)
T ss_dssp TEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-------------CEEEEEEESSC
T ss_pred CEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-------------CEEEEEcccCC
Confidence 999999985 45555554332234577899999999888887775 999999654 34455544332
Q ss_pred --ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 303 --CTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 303 --~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.+.++++ +|++ +++++ +.|++|.+
T Consensus 250 ~~~~~~i~~--~~~g----~l~vs-~~~~~v~v 275 (286)
T 1q7f_A 250 HAQCFDVAL--MDDG----SVVLA-SKDYRLYI 275 (286)
T ss_dssp CSCEEEEEE--ETTT----EEEEE-ETTTEEEE
T ss_pred CCcceeEEE--CCCC----cEEEE-CCCCeEEE
Confidence 4678999 9999 87777 56887764
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=2.7e-18 Score=156.37 Aligned_cols=238 Identities=11% Similarity=0.018 Sum_probs=154.7
Q ss_pred EEEEc--CCCcE-EEEeeC-CCeEEEEECC--C-CCceeeeeCCCCCCCCcceeeeee----eceeEEEEEEecccceec
Q psy2305 6 DVDEA--PDGTC-LLTNSN-DNHLRTFDLP--S-ELHCKSVWRPSNQRPKLNYTLKIK----EGGIIYDYVWYPKTSSID 74 (334)
Q Consensus 6 ~~~~s--p~~~~-l~~~~~-d~~v~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~s 74 (334)
...|+ |||++ |+..+. +..|+++++. + +... .+... +...+..++| +
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~---------------~l~~~~~~~~~~~~~~~~~-------s 138 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR---------------PLTPVSAVGGGLRWADPVL-------L 138 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE---------------ECSCCCCSTTCEEEEEEEE-------E
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE---------------eccCCccCCCCccccCcEE-------C
Confidence 34455 99998 776653 5677777776 3 4332 22221 3345666666 7
Q ss_pred CCCcEEEEeeCC----------CcEEEEeCCC------CeeeEEEc-CccccccccceeEEEEcCCCCEEEEee-C----
Q psy2305 75 GFTSYFLCSSMY----------APIHLWDSVG------GEIKATYR-PYNQVDEVTHAYSLAFSLDGNKIYAGF-L---- 132 (334)
Q Consensus 75 ~~~~~l~~~~~d----------~~i~iwd~~~------~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---- 132 (334)
|||+.|++++.+ ..|.+||+.+ ++. ..+. .... .+..++|+|||++|+.++ +
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~-----~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHR-----FVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSS-----EECCCEECTTSSEEEEEEECTTCC
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCC-----cccCceECCCCCEEEEEECCCCCC
Confidence 799999988876 5899999987 544 3333 2222 678899999999998654 4
Q ss_pred ----CcEEEEEcCCCCC--eeeeecccccccccceEEEEEcCCCCcEEEEeecCC--eEEEEECCCCCceEeeccCCCC-
Q psy2305 133 ----SEVKIFSTDRPGR--ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK--IIGLFSDSDGRPLFFLKGHNGG- 203 (334)
Q Consensus 133 ----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~- 203 (334)
..|.+||+...+. .... ....+...+..+.|+|+|+ +++++..++ .|.+||+.+++.......+...
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~---l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRT---LLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEE---EEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred CCCCcEEEEEEECCCCcccccEE---eCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 3799999983241 2222 2344567899999999999 888888888 6777777666654433332221
Q ss_pred -------eEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEE-EecCCCceEEeeecCC--cEEE
Q psy2305 204 -------ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF-DLTSCSNYLLSGNTNG--DLSI 273 (334)
Q Consensus 204 -------i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~~~~dg--~i~i 273 (334)
+..++|+|++++++++. . +.++||.+...+..+..+..+ ...+..+ +++++.-++++++.+. .|.+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHG-K-GAAVLGILDPESGELVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEB-S-SSCEEEEEETTTTEEEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEE-c-CccEEEEEECCCCcEEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence 46789999999999998 7 999999655323345556544 3344444 4443333344445444 4566
Q ss_pred EeCCCC
Q psy2305 274 WNVNTS 279 (334)
Q Consensus 274 wd~~~~ 279 (334)
+|+.++
T Consensus 365 ~d~~~g 370 (662)
T 3azo_A 365 LDTVTG 370 (662)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 676665
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.83 E-value=8.8e-18 Score=137.66 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=159.3
Q ss_pred eecCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305 72 SIDGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS 149 (334)
Q Consensus 72 ~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 149 (334)
+|+|+++ +++++..++.|..|+..++ ...+..... .+.+++++|+|+++++.. ++.|.+||..+ ++....
T Consensus 34 ~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~-----~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~ 105 (296)
T 3e5z_A 34 VYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH-----HQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESI 105 (296)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS-----SEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEE
T ss_pred eEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC-----CcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEE
Confidence 3477888 7788888899999999877 444543332 688999999999887776 68999999865 443221
Q ss_pred ecccccccccceEEEEEcCCCCcEEEE----eec-------------CCeEEEEECCCCCceEeeccCCCCeEEEEEccC
Q psy2305 150 RNLKPWFRKNIVSAIAINPVHPDICAL----GTY-------------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN 212 (334)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 212 (334)
...........+..++++|+|+ ++++ |+. .+.|..++.. ++ ...+..+......++|+|+
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTT
T ss_pred eeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCC
Confidence 1000111123567899999998 7776 331 3467777755 43 4445556667889999999
Q ss_pred CcEEEeeecCCCeEEEEEccCCCcc---ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccc
Q psy2305 213 GILLFSGARKDCEIICWDLRNPGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEES 289 (334)
Q Consensus 213 ~~~l~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 289 (334)
|+.|++.+ .++.|++|++...+.. ...+ ......+..++++++|+++++. ++.|.+|+.. +
T Consensus 183 g~~lv~~~-~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g---------- 246 (296)
T 3e5z_A 183 GNLLVSDT-GDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G---------- 246 (296)
T ss_dssp SCEEEEET-TTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S----------
T ss_pred CCEEEEeC-CCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C----------
Confidence 99886666 7899999999732443 2233 1123344568899999877666 7889999987 4
Q ss_pred cccccceecccccccceeeeccC-CCcccceeeEEeeecceeeee
Q psy2305 290 VQEPLYKFSAHQDCTNGVRWKHH-KFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 290 ~~~~~~~~~~~~~~i~~~~~~~s-~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.+..+..+.. +.+++| . |++ +.|++++.++.+++
T Consensus 247 --~~~~~~~~~~~-~~~~~f--~~~d~----~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 247 --DELGRVLTPQT-TSNLCF--GGPEG----RTLYMTVSTEFWSI 282 (296)
T ss_dssp --CEEEEEECSSC-CCEEEE--ESTTS----CEEEEEETTEEEEE
T ss_pred --CEEEEEECCCC-ceeEEE--ECCCC----CEEEEEcCCeEEEE
Confidence 56666766666 899999 6 788 88888888887764
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=6.3e-18 Score=142.26 Aligned_cols=269 Identities=7% Similarity=0.010 Sum_probs=177.7
Q ss_pred CCCcEEEEee------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305 11 PDGTCLLTNS------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS 84 (334)
Q Consensus 11 p~~~~l~~~~------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~ 84 (334)
++++++++.. .|+.|.+||..+++.. ..+..+ ..| .++++||+++++++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~--------------~~i~~g---------~~p-~i~~spdg~~lyv~~ 68 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFL--------------GMVPTA---------FNG-HVQVSNDGKKIYTMT 68 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEE--------------EEEECC---------EEE-EEEECTTSSEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEE--------------EEecCC---------CCC-ceEECCCCCEEEEEE
Confidence 3677776653 4789999999888765 233221 123 356689999998876
Q ss_pred ----------CCCcEEEEeCCCCeeeEEEcCccc-cccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeee
Q psy2305 85 ----------MYAPIHLWDSVGGEIKATYRPYNQ-VDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 85 ----------~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~ 150 (334)
.++.|.+||..+++.+..+..... .........++++|||++|+++. ++.|.+||+.+ ++.+..
T Consensus 69 ~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~-~~~~~~- 146 (361)
T 2oiz_A 69 TYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK-GDYVED- 146 (361)
T ss_dssp EEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT-TEEEEE-
T ss_pred ecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC-CcEEEE-
Confidence 356799999999888877764211 00011467899999999999764 47899999996 444432
Q ss_pred cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceE------eeccCCCCeEEEEEccCCcEEEeeecCC
Q psy2305 151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLF------FLKGHNGGITHLEFSSNGILLFSGARKD 223 (334)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~~d 223 (334)
.+. .. ....+.+.|++...+++.+.||.+.+|+... ++... .+..+..++ .+.++|++..++..+ .+
T Consensus 147 --~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~ 220 (361)
T 2oiz_A 147 --VTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-YY 220 (361)
T ss_dssp --EGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-TT
T ss_pred --Eec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-CC
Confidence 011 11 1233567887744788888999999999865 44431 222222222 344567888888788 79
Q ss_pred CeEEEEEccCCCccc-eeecc------cc--cCCceEEEEecCCCceEEeeec-----------CCcEEEEeCCCCCCCC
Q psy2305 224 CEIICWDLRNPGCIL-HTFPR------QV--STNQRVYFDLTSCSNYLLSGNT-----------NGDLSIWNVNTSNLPS 283 (334)
Q Consensus 224 ~~i~iwd~~~~~~~~-~~~~~------~~--~~~~~~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~ 283 (334)
+.+.++|+......+ ..+.. .. .......++|+|+++.++++.. .+.|.+||+.++
T Consensus 221 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---- 296 (361)
T 2oiz_A 221 GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---- 296 (361)
T ss_dssp SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----
T ss_pred CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC----
Confidence 999999997522111 11110 00 0011112678999888776543 348999999998
Q ss_pred CCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305 284 SPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV 332 (334)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~ 332 (334)
+.+..+..+. +.+++| +||+ ++|++++. +.|.
T Consensus 297 --------~~v~~i~~~~--p~~ia~--spdg----~~l~v~n~-~~v~ 328 (361)
T 2oiz_A 297 --------QRVARIPGRD--ALSMTI--DQQR----NLMLTLDG-GNVN 328 (361)
T ss_dssp --------EEEEEEECTT--CCEEEE--ETTT----TEEEEECS-SCEE
T ss_pred --------cEEEEEecCC--eeEEEE--CCCC----CEEEEeCC-CeEE
Confidence 7778887766 899999 9999 98888876 6654
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=2.1e-18 Score=146.86 Aligned_cols=224 Identities=8% Similarity=-0.099 Sum_probs=148.6
Q ss_pred ceecCCCcEEEEeeC-CC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCe
Q psy2305 71 SSIDGFTSYFLCSSM-YA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRE 146 (334)
Q Consensus 71 ~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~ 146 (334)
.+|+|||++|+.++. ++ .|.+||+.+++.......+.. .+..+.|+|||+.|+.+. ++.+.+||+.+ ++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-g~~ 114 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD-----NTFGGFLSPDDDALFYVKDGRNLMRVDLAT-LEE 114 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB-----CSSSCEECTTSSEEEEEETTTEEEEEETTT-CCE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC-----CccceEEcCCCCEEEEEeCCCeEEEEECCC-Ccc
Confidence 457999999998887 66 488889988887665544332 344678999999999887 78999999997 443
Q ss_pred eeeecccccccccceEEE--EEcCCCCcEEEEe----------------------ecCCeEEEEECCCCCceEeeccCCC
Q psy2305 147 CVSRNLKPWFRKNIVSAI--AINPVHPDICALG----------------------TYSKIIGLFSDSDGRPLFFLKGHNG 202 (334)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~ 202 (334)
.. ....+...+... .++|++. +++.. ..+..|++||+.+++.. .+..+..
T Consensus 115 ~~----~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~ 188 (388)
T 3pe7_A 115 NV----VYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQ 188 (388)
T ss_dssp EE----EEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESS
T ss_pred ee----eeechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCc
Confidence 32 223333434333 3489998 66632 23468999999988654 4445677
Q ss_pred CeEEEEEcc-CCcEEEeeecCC------CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec-CC----c
Q psy2305 203 GITHLEFSS-NGILLFSGARKD------CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NG----D 270 (334)
Q Consensus 203 ~i~~~~~~~-~~~~l~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg----~ 270 (334)
.+..++|+| +|+.|+... .+ ..|.++|... .....+..+.....+..+.|+|||+.|+..+. ++ .
T Consensus 189 ~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCH-EGPHDLVDARMWLINEDG--TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF 265 (388)
T ss_dssp CEEEEEEETTEEEEEEEEE-CSCTTTSSCSEEEEETTS--CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred cccccEECCCCCCEEEEEE-ecCCCCCcceEEEEeCCC--CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence 889999999 999998877 43 2677777664 33344443322235667889999998866443 22 3
Q ss_pred EEEEeCCCCCCCCCCCccccccccceeccccc---ccceeeeccCCCcccceeeEEee
Q psy2305 271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD---CTNGVRWKHHKFERDLLVADATC 325 (334)
Q Consensus 271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~s~~~~~~~~~l~t~ 325 (334)
|++||+.+++. +.+..+.++.. ....+.| +||| +.|+..
T Consensus 266 l~~~d~~~g~~----------~~l~~~~~~~~~~~~~~~~~~--spdg----~~l~~~ 307 (388)
T 3pe7_A 266 IYSADPETLEN----------RQLTSMPACSHLMSNYDGSLM--VGDG----SDAPVD 307 (388)
T ss_dssp EEEECTTTCCE----------EEEEEECCEEEEEECTTSSEE--EEEE----CCC---
T ss_pred EEEEecCCCce----------EEEEcCCCceeeeecCCCCeE--ccCC----CcceeE
Confidence 99999998732 23333333111 1344589 9999 877754
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=2.1e-17 Score=138.45 Aligned_cols=240 Identities=10% Similarity=-0.034 Sum_probs=158.5
Q ss_pred CceeEEEEcCCCcEEEEee---------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce
Q psy2305 2 DIEEDVDEAPDGTCLLTNS---------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS 72 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 72 (334)
..+..+++ ||++++... .++.|.+|++.+++.. .+ ..+..+.|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---------------~l-----~~~~~~~~------ 66 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---------------FI-----ENATMPRI------ 66 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---------------EE-----ESCEEEEE------
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---------------Ec-----ccCCCeEE------
Confidence 34677788 898887642 2568999999887653 22 33555555
Q ss_pred ecCCCcEEEEeeCC---C--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--------------
Q psy2305 73 IDGFTSYFLCSSMY---A--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-------------- 132 (334)
Q Consensus 73 ~s~~~~~l~~~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-------------- 132 (334)
||||+.|+..+.+ + .|.+|++.+++....... . .+..++|+|||+.|+.+. +
T Consensus 67 -SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~-----~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 67 -SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--K-----NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp -CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--S-----EEEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred -CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--C-----CccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 8899999887653 2 488889988876554432 1 278999999999888664 3
Q ss_pred -------------CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------C-eEEEEECCCCC
Q psy2305 133 -------------SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------K-IIGLFSDSDGR 192 (334)
Q Consensus 133 -------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g-~i~i~d~~~~~ 192 (334)
..|.+||+.+ +..... +.. . .+..+.|+|+| +++++..+ . ...+|.+.+++
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~-~~~~~~----l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~ 209 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTES-EEVIEE----FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK 209 (347)
T ss_dssp CC---------CEEEEEEEETTT-TEEEEE----EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred eeecCcccccCccceEEEEECCC-CeEEee----ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc
Confidence 4688899875 433132 222 3 78899999999 56655443 2 33444433444
Q ss_pred ceEeeccCCCCeEEEEEccCCcEEEeeecCC--------CeEEEEEccCCCccceeecccccCCceEE-EEecCCCceEE
Q psy2305 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKD--------CEIICWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSNYLL 263 (334)
Q Consensus 193 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~ 263 (334)
...+..+ ..+..+ +|+|++|+.++ .+ ..|.+|| . ++.......+ ...+.. +.|+ ++ +++
T Consensus 210 -~~~l~~~-~~~~~~--spdg~~l~~~~-~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~--~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 210 -EEKMFEK-VSFYAV--DSDGERILLYG-KPEKKYMSEHNKLYIYD--G-KEVMGILDEV--DRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp -EEEEEEE-ESEEEE--EECSSCEEEEE-CCSSSCCCSSCEEEEEC--S-SCEEESSTTC--CSEEEEEEEET-TE-EEE
T ss_pred -eEEeccC-cceeeE--CCCCCEEEEEE-ccccCCccccceEEEEC--C-CceEeccccC--CcccCCccEEc-Cc-EEE
Confidence 4444444 555554 99999888776 44 3677777 3 4433222222 345554 7899 88 888
Q ss_pred eeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305 264 SGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE 315 (334)
Q Consensus 264 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~ 315 (334)
+++.++.++|| +.++ +. ..+..+.+.|.+++| +| .
T Consensus 278 ~~~~~~~~~l~-~~~g------------~~-~~~~~~~~~v~~~~~--s~-~ 312 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDG------------EI-KPIAKGRHWIMGFDV--DE-I 312 (347)
T ss_dssp EEEETTEEEEE-EESS------------SE-EEEECSSSEEEEEEE--SS-S
T ss_pred EEecCCcEEEE-EcCC------------ce-EEEecCCCeEEeeee--eC-c
Confidence 99999999999 8744 33 334445678899999 88 7
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.81 E-value=5.6e-17 Score=148.77 Aligned_cols=231 Identities=10% Similarity=0.055 Sum_probs=157.6
Q ss_pred eEEEEEEecccceecCCCcEEEEeeCCC-----cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305 60 IIYDYVWYPKTSSIDGFTSYFLCSSMYA-----PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS 133 (334)
Q Consensus 60 ~v~~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 133 (334)
.+..++| ||||++|+.+..++ .|++||+.+++....... .. .+..++|+|||+.|+.+. ++
T Consensus 126 ~~~~~~~-------SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~-----~~~~~~wspDg~~l~~~~~~~ 192 (710)
T 2xdw_A 126 ALRGYAF-------SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RV-----KFSCMAWTHDGKGMFYNAYPQ 192 (710)
T ss_dssp EEEEEEE-------CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EE-----CSCCEEECTTSSEEEEEECCC
T ss_pred EEEEEEE-------CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-Cc-----ccceEEEEeCCCEEEEEEECC
Confidence 4555555 88999998775433 899999999987653221 11 356899999999998765 54
Q ss_pred c----------------EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-----CCeEEEEECCC--
Q psy2305 134 E----------------VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-----SKIIGLFSDSD-- 190 (334)
Q Consensus 134 ~----------------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~-- 190 (334)
. |++|++.+........ .....+...+..+.|+|+|+ +|+..+. +..|++||+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v-~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC-AEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE-ECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred ccccccccccccCCCCEEEEEECCCCcccceEE-eccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccc
Confidence 4 9999998632111110 01233455678999999999 7776654 56899999976
Q ss_pred ----CC-ceEeeccCCCCeEEEEEccCCcEEEeeecC---CCeEEEEEccCCCc-cceeecccccCCceEEEEecCCCce
Q psy2305 191 ----GR-PLFFLKGHNGGITHLEFSSNGILLFSGARK---DCEIICWDLRNPGC-ILHTFPRQVSTNQRVYFDLTSCSNY 261 (334)
Q Consensus 191 ----~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 261 (334)
+. ....+..+...+.. .|+|+|+.|+..+.. ...|.+||+..... ....+..+.....+..+.|++++.+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 349 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL 349 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred cccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence 43 45666666666655 488999988776622 23699999986321 2344444433335667888888888
Q ss_pred EEeeecCCc--EEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEe
Q psy2305 262 LLSGNTNGD--LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADAT 324 (334)
Q Consensus 262 l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t 324 (334)
+++...++. |.+|++.++ +.+..+..+.+.+..+.+ +|++ ..|+.
T Consensus 350 v~~~~~~g~~~l~~~~~~~g------------~~~~~l~~~~~~v~~~~~--s~d~----~~l~~ 396 (710)
T 2xdw_A 350 VLCYLHDVKNTLQLHDLATG------------ALLKIFPLEVGSVVGYSG--QKKD----TEIFY 396 (710)
T ss_dssp EEEEEETTEEEEEEEETTTC------------CEEEEECCCSSEEEEEEC--CTTC----SEEEE
T ss_pred EEEEEECCEEEEEEEECCCC------------CEEEecCCCCceEEEEec--CCCC----CEEEE
Confidence 888888884 566777666 445566666778889999 9988 65553
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=3.9e-16 Score=130.03 Aligned_cols=239 Identities=13% Similarity=0.065 Sum_probs=158.9
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.+.+++|+|+|++++++..++.|.+||..+++.. .+...+...+.++++ +++++++++
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~i~~-------~~dg~l~v~ 103 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------RPFVSHKANPAAIKI-------HKDGRLFVC 103 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------EEEECSSSSEEEEEE-------CTTSCEEEE
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------EEeeCCCCCcceEEE-------CCCCcEEEE
Confidence 4678999999998788888999999999887754 122123355666666 779988877
Q ss_pred eeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeC-------CcEEEEEcCCCCCeeeeec
Q psy2305 83 SSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-------SEVKIFSTDRPGRECVSRN 151 (334)
Q Consensus 83 ~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~ 151 (334)
...+ +.|.+||..++.....+...... ..+..++++|+|+++++... +.|..++.. +.....
T Consensus 104 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~~~~~~-- 176 (333)
T 2dg1_A 104 YLGDFKSTGGIFAATENGDNLQDIIEDLSTA---YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTP-- 176 (333)
T ss_dssp ECTTSSSCCEEEEECTTSCSCEEEECSSSSC---CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEE--
T ss_pred eCCCCCCCceEEEEeCCCCEEEEEEccCccC---CcccceEECCCCCEEEEeccccccCCCceEEEEeCC--CCEEEE--
Confidence 7665 68999998877655344321111 26889999999988776542 345445544 323321
Q ss_pred ccccccccceEEEEEcCCCCcEEE-EeecCCeEEEEECCC-CCceEe--------eccCCCCeEEEEEccCCcEEEeeec
Q psy2305 152 LKPWFRKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSD-GRPLFF--------LKGHNGGITHLEFSSNGILLFSGAR 221 (334)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~ 221 (334)
+......+..++|+|+++ .++ +...++.|.+||+++ ++.... +.++ ..+..++++++|+++++..
T Consensus 177 --~~~~~~~~~~i~~~~dg~-~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~- 251 (333)
T 2dg1_A 177 --IIQNISVANGIALSTDEK-VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY- 251 (333)
T ss_dssp --EEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-
T ss_pred --eecCCCcccceEECCCCC-EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-
Confidence 222334578999999998 554 445678999999864 333321 1222 4678899999999877777
Q ss_pred CCCeEEEEEccCCCccceeeccccc----CCceEEEEecCCCceEEeeecCC------cEEEEeCC
Q psy2305 222 KDCEIICWDLRNPGCILHTFPRQVS----TNQRVYFDLTSCSNYLLSGNTNG------DLSIWNVN 277 (334)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~dg------~i~iwd~~ 277 (334)
.++.|.+||.. ++.+..+..... ...+.+++|+|+++.|+.++.++ .|..+++.
T Consensus 252 ~~~~v~~~d~~--g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 252 GQGRVLVFNKR--GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TTTEEEEECTT--SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCCEEEEECCC--CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 68999999984 555555543211 11467788999987776655543 45544544
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.81 E-value=1.2e-15 Score=124.77 Aligned_cols=274 Identities=11% Similarity=0.067 Sum_probs=183.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
..+.+++++++|+++++...++.|.+|+.. ++.. .+. ......+.++++ +++++++
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------~~~~~~~~~~~~~i~~-------~~~g~l~ 71 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------EYPLPTPDAKVMCLTI-------SSDGEVW 71 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------EEECSSTTCCEEEEEE-------CTTSCEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------EecCCcccCceeeEEE-------CCCCCEE
Confidence 358899999999977776667899999988 5443 111 111234545444 7799888
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++...++.|..||.. ++. ..+...... ..+..+++.++++++++.. ++.|..||.. +..... .......
T Consensus 72 v~~~~~~~i~~~~~~-g~~-~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~---~~~~~~~ 141 (299)
T 2z2n_A 72 FTENAANKIGRITKK-GII-KEYTLPNPD---SAPYGITEGPNGDIWFTEMNGNRIGRITDD--GKIREY---ELPNKGS 141 (299)
T ss_dssp EEETTTTEEEEECTT-SCE-EEEECSSTT---CCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEE---ECSSTTC
T ss_pred EeCCCCCeEEEECCC-CcE-EEEeCCCcC---CCceeeEECCCCCEEEEecCCceEEEECCC--CCEEEe---cCCCCCC
Confidence 877768889999976 443 223221111 1678999999998877765 7899999983 443321 2233445
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
.+.++++.+++. ++++...++.|..||. +++.... +......+.+++++++|+++++.. .++.|.+||. + +..
T Consensus 142 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~-g~~- 215 (299)
T 2z2n_A 142 YPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-S-GEI- 215 (299)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-T-CCE-
T ss_pred CCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-C-CcE-
Confidence 789999999998 7776666789999998 6655432 333455688999999998766665 6889999998 4 442
Q ss_pred eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305 239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL 318 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~ 318 (334)
..+........+..++++++|+++++...++.|..||.. +. .....+..+...+.++++ +++
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-----------~~~~~~~~~~~~~~~i~~---~~g--- 277 (299)
T 2z2n_A 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-----------IEEYPIQIKSAEPHGICF---DGE--- 277 (299)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-----------EEEEECSSSSCCEEEEEE---CSS---
T ss_pred EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-----------eEEEeCCCCCCccceEEe---cCC---
Confidence 223222223567789999999877766567899999983 31 111112333456777777 567
Q ss_pred eeeEEeeecceeeee
Q psy2305 319 LVADATCSGQITNVK 333 (334)
Q Consensus 319 ~~~l~t~~~d~~i~~ 333 (334)
.++++.+.++.+++
T Consensus 278 -~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 278 -TIWFAMECDKIGKL 291 (299)
T ss_dssp -CEEEEETTTEEEEE
T ss_pred -CEEEEecCCcEEEE
Confidence 66666556666543
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.81 E-value=4.6e-17 Score=149.35 Aligned_cols=242 Identities=9% Similarity=0.011 Sum_probs=163.2
Q ss_pred ceeEEEEcCCCcEEEEeeCCC-----eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDN-----HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
.+..++|||||++||.+..++ .|++||+.+++.. .. ...+ ..+..++| +|||
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~--------------~~-~~~~-~~~~~~~w-------spDg 182 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL--------------PD-VLER-VKFSCMAW-------THDG 182 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE--------------EE-EEEE-ECSCCEEE-------CTTS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC--------------cc-cccC-cccceEEE-------EeCC
Confidence 367899999999998776433 8999999998764 11 1111 12334444 8899
Q ss_pred cEEEEeeCCCc----------------EEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee------CC
Q psy2305 78 SYFLCSSMYAP----------------IHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF------LS 133 (334)
Q Consensus 78 ~~l~~~~~d~~----------------i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~ 133 (334)
+.|+.++.++. |++|++.+++. ...+....+.. .+..+.|+|||++|+.+. +.
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~---~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK---WMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT---CEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe---EEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 99999887765 99999987763 22333322211 567899999999988543 45
Q ss_pred cEEEEEcCC------CCCeeeeecccccccccceEEEEEcCCCCcEEEEeec----CCeEEEEECCCCC--ceEeeccCC
Q psy2305 134 EVKIFSTDR------PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY----SKIIGLFSDSDGR--PLFFLKGHN 201 (334)
Q Consensus 134 ~i~i~d~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~--~~~~~~~~~ 201 (334)
.|.+||+.. +..... .+..+...+.. .|+|+|+ .|+..+. .+.|.+||+.++. ....+..|.
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~----~l~~~~~~~~~-~~s~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWV----KLIDNFEGEYD-YVTNEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCE----EEECSSSSCEE-EEEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred EEEEEECcccccccCCccceE----EeeCCCCcEEE-EEeccCC-EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence 799999874 211222 23444444544 4889998 6655443 3469999998775 234555454
Q ss_pred C--CeEEEEEccCCcEEEeeecCCCe--EEEEEccCCCccceeecccccCCceEEEEecCCCceEEee----ecCCcEEE
Q psy2305 202 G--GITHLEFSSNGILLFSGARKDCE--IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG----NTNGDLSI 273 (334)
Q Consensus 202 ~--~i~~~~~~~~~~~l~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~i 273 (334)
. .+..++|++++.++++.. .++. |++||+.+ ++.+..+..+ ...+..+.++|+++.++.. ...+.|++
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~-g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 409 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLAT-GALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH 409 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTT-CCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred CCCeEEEEEEEcCCEEEEEEE-ECCEEEEEEEECCC-CCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence 3 688899998887888887 7875 55566644 5555666554 5567778899998766533 23578999
Q ss_pred EeCCCCC
Q psy2305 274 WNVNTSN 280 (334)
Q Consensus 274 wd~~~~~ 280 (334)
||+.+++
T Consensus 410 ~d~~tg~ 416 (710)
T 2xdw_A 410 CDLTKEE 416 (710)
T ss_dssp EETTSSS
T ss_pred EECCCCc
Confidence 9998875
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=6.3e-17 Score=135.57 Aligned_cols=221 Identities=12% Similarity=0.111 Sum_probs=149.2
Q ss_pred ceeEEEEcCCCcEEEEeeCC---C--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 3 IEEDVDEAPDGTCLLTNSND---N--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d---~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
.+..++|||||++||..+.+ + .|.+|++.+++.. .+.... . +..+.| +|||
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~---------------~l~~~~-~-~~~~~w-------spdg 115 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK---------------KILEAK-N-IRSLEW-------NEDS 115 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE---------------EEEEES-E-EEEEEE-------CTTS
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE---------------EEEcCC-C-ccceeE-------CCCC
Confidence 46789999999999887643 3 4777888877643 222222 3 667666 7799
Q ss_pred cEEEEeeCC---------------------------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305 78 SYFLCSSMY---------------------------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130 (334)
Q Consensus 78 ~~l~~~~~d---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (334)
+.|+.++.+ ..|.+||+.+++.+..+.. . .+..++|+||| +++++
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 116 RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETTE-EEEEE
T ss_pred CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCCe-EEEEE
Confidence 988887632 5689999988876444443 1 46789999999 77666
Q ss_pred e-C------C-cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC--------CeEEEEECCCCCce
Q psy2305 131 F-L------S-EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--------KIIGLFSDSDGRPL 194 (334)
Q Consensus 131 ~-d------~-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~ 194 (334)
. + . ...+|.++ .+.. . .+..+ ..+..+ +|+|+ .|+.++.+ ..|.+|| +++..
T Consensus 188 ~~~~~~~~~~~~~~l~~~d-~~~~-~----~l~~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~~~~~ 255 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWE-DGKE-E----KMFEK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD--GKEVM 255 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEE-TTEE-E----EEEEE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred ecccccccccccccEEEeC-CCce-E----EeccC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC--CCceE
Confidence 4 3 2 45666655 2432 2 12333 445444 99999 67666533 4788888 55555
Q ss_pred EeeccCCCCeEE-EEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcE-E
Q psy2305 195 FFLKGHNGGITH-LEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDL-S 272 (334)
Q Consensus 195 ~~~~~~~~~i~~-~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i-~ 272 (334)
.....+...+.. +.|+ ++ ++++++ .++.+++| +.. ++.. .+..+ ...+..++|+| .++++++.++.. .
T Consensus 256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~-g~~~-~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~ 325 (347)
T 2gop_A 256 GILDEVDRGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWD-GEIK-PIAKG--RHWIMGFDVDE--IVVYLKETATRLRE 325 (347)
T ss_dssp ESSTTCCSEEEEEEEET-TE-EEEEEE-ETTEEEEE-EES-SSEE-EEECS--SSEEEEEEESS--SEEEEEECSSSCCE
T ss_pred eccccCCcccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcC-CceE-EEecC--CCeEEeeeeeC--cEEEEEcCCCChHH
Confidence 445566777886 9999 88 888888 79999999 884 5543 33322 45677899999 667776666654 6
Q ss_pred EEeCC
Q psy2305 273 IWNVN 277 (334)
Q Consensus 273 iwd~~ 277 (334)
+|.+.
T Consensus 326 l~~~~ 330 (347)
T 2gop_A 326 LFTWD 330 (347)
T ss_dssp EEEES
T ss_pred heEeC
Confidence 66665
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.80 E-value=9.6e-17 Score=129.55 Aligned_cols=239 Identities=9% Similarity=0.042 Sum_probs=162.1
Q ss_pred ceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 3 IEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
...+++++|+|++++ +...++.|.+|+..+.... .+...... .|..+++++++++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~-------~p~~i~~~~~g~l~v 82 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------VLPFNGLY-------QPQGLAVDGAGTVYV 82 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------ECCCCSCC-------SCCCEEECTTCCEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------eEeeCCcC-------CcceeEECCCCCEEE
Confidence 577899999998776 5467889999997655432 11111111 234566688988666
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI 160 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+.. ++.|.+||...... ..+.... . ..+..++++++|+++++.. ++.|.+|+... ..... ........
T Consensus 83 ~~~-~~~i~~~d~~~~~~-~~~~~~~-~---~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~----~~~~~~~~ 151 (270)
T 1rwi_B 83 TDF-NNRVVTLAAGSNNQ-TVLPFDG-L---NYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTV----LPFTGLND 151 (270)
T ss_dssp EET-TTEEEEECTTCSCC-EECCCCS-C---SSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEE----CCCCSCCS
T ss_pred EcC-CCEEEEEeCCCceE-eeeecCC-c---CCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEe----eccccCCC
Confidence 655 88999999865543 3332211 1 1678999999998777665 78999997653 22211 12223346
Q ss_pred eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240 (334)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~ 240 (334)
+.+++++++|+ ++++...++.|.+||............+...+.+++++++|..+++.. .++.|.+||... .. ...
T Consensus 152 p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~-~~-~~~ 227 (270)
T 1rwi_B 152 PDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGS-TT-STV 227 (270)
T ss_dssp CCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTC-SC-CEE
T ss_pred ceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCC-Cc-cee
Confidence 78899999998 777777788999999876654443333446788999999997666666 688999999875 22 222
Q ss_pred ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
... .....+..++++++|+++++...++.|+++++...
T Consensus 228 ~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 228 LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 221 11245778999999998888888999999998875
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.79 E-value=9.6e-16 Score=135.49 Aligned_cols=272 Identities=11% Similarity=0.052 Sum_probs=184.7
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEE
Q psy2305 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIH 90 (334)
Q Consensus 11 p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 90 (334)
|.+.++++...++.|.++|..+++.. ..+.. +..+..+ .++|||+++++++.|+.|.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~--------------~~i~~--g~~p~~v-------~~SpDGr~lyv~~~dg~V~ 221 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK--------------TVLDT--GYAVHIS-------RLSASGRYLFVIGRDGKVN 221 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE--------------EEEEC--SSCEEEE-------EECTTSCEEEEEETTSEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE--------------EEEeC--CCCccce-------EECCCCCEEEEEcCCCeEE
Confidence 34456677778899999999998875 23332 2233344 4588999999999999999
Q ss_pred EEeCC--CCeeeEEEcCccccccccceeEEEEc----CCCCEEEEee--CCcEEEEEcCCCCCeeeeeccccc------c
Q psy2305 91 LWDSV--GGEIKATYRPYNQVDEVTHAYSLAFS----LDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPW------F 156 (334)
Q Consensus 91 iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~------~ 156 (334)
+||+. +++.+..+.... ....++|+ |||+++++++ ++++.++|..+ .+.+...++.-. .
T Consensus 222 viD~~~~t~~~v~~i~~G~------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 222 MIDLWMKEPTTVAEIKIGS------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp EEETTSSSCCEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCE
T ss_pred EEECCCCCCcEeEEEecCC------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccc
Confidence 99995 777777776522 56799999 6999999775 79999999886 555554321100 1
Q ss_pred ccc-ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305 157 RKN-IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233 (334)
Q Consensus 157 ~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~ 233 (334)
|.. .+..+..++++..+++....+|.|.++|..+.+... .+. .......+.|+|+|+++++++..++.|.++|+.+
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 222 678899999887566666778999999987654322 222 3345678999999999888775689999999997
Q ss_pred CCccceeecc-c--ccCCceEEEEecCCCceE-Eeee-cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305 234 PGCILHTFPR-Q--VSTNQRVYFDLTSCSNYL-LSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308 (334)
Q Consensus 234 ~~~~~~~~~~-~--~~~~~~~~~~~s~~~~~l-~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 308 (334)
++....+.. . .+......+ ++|++..+ +++. .++.|.++|..+.+.. +..++.++.+......-..+.
T Consensus 374 -~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~-----~~~~kvv~~i~~~g~g~~~i~ 446 (567)
T 1qks_A 374 -GKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP-----DNAWKILDSFPALGGGSLFIK 446 (567)
T ss_dssp -TEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT-----TTBTSEEEEEECSCSCCCCEE
T ss_pred -CcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc-----cccCEEEEEEecCCCCCEEEE
Confidence 665554432 1 112222233 57875444 4443 4689999999874210 112356666665433335678
Q ss_pred eccCCCcccceeeEEeee
Q psy2305 309 WKHHKFERDLLVADATCS 326 (334)
Q Consensus 309 ~~~s~~~~~~~~~l~t~~ 326 (334)
. +|++ ++|.+..
T Consensus 447 ~--~p~~----~~l~v~~ 458 (567)
T 1qks_A 447 T--HPNS----QYLYVDA 458 (567)
T ss_dssp C--CTTC----SEEEEEC
T ss_pred e--CCCC----CeEEEec
Confidence 8 9999 8777654
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.79 E-value=2e-16 Score=129.55 Aligned_cols=237 Identities=11% Similarity=0.097 Sum_probs=161.1
Q ss_pred ceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 3 IEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 3 ~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
...+++|+|+|+ +++++..++.|.+|+..++ .. .+.. +...+.++++ +++|++++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---------------~~~~-~~~~~~~l~~-------~~dg~l~v 84 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---------------PEMH-PSHHQNGHCL-------NKQGHLIA 84 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---------------EEES-SCSSEEEEEE-------CTTCCEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---------------EEEC-CCCCcceeeE-------CCCCcEEE
Confidence 467899999998 7778888999999999877 32 2222 2344555555 78999888
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEE----ee-C-----------CcEEEEEcCCCCC
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA----GF-L-----------SEVKIFSTDRPGR 145 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-d-----------~~i~i~d~~~~~~ 145 (334)
+...++.|.+||..+++.......... .....+..++++|+|+++++ |. + +.-.+|.++..+.
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~ 163 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT 163 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCC-CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC
Confidence 777778999999988876544332111 11114678999999998886 32 0 1224555543233
Q ss_pred eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC-CCCc---eEeeccCCCCeEEEEEccCCcEEEeeec
Q psy2305 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-DGRP---LFFLKGHNGGITHLEFSSNGILLFSGAR 221 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 221 (334)
.. ....+......++|+|+++ .+++.+.++.|.+||+. +++. ...+..+...+.+++++++|++++ +.
T Consensus 164 -~~----~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~- 235 (296)
T 3e5z_A 164 -LS----APIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA- 235 (296)
T ss_dssp -EE----EEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-
T ss_pred -EE----EeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-
Confidence 22 2334556678999999999 77777778999999986 4544 233333455667899999998554 43
Q ss_pred CCCeEEEEEccCCCccceeecccccCCceEEEEe-cCCCceEEeeecCCcEEEEeCCCC
Q psy2305 222 KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL-TSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
++.|.+||.. ++.+..+..+ .. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 236 -~~~v~~~~~~--g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 236 -GDGVHVLTPD--GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -TTEEEEECTT--SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -CCeEEEECCC--CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 6789999986 5556666544 22 667788 6899988888765 4555666664
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.79 E-value=1e-16 Score=129.38 Aligned_cols=233 Identities=8% Similarity=0.035 Sum_probs=156.1
Q ss_pred cccceecCCCcEEE-EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCe
Q psy2305 68 PKTSSIDGFTSYFL-CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRE 146 (334)
Q Consensus 68 ~~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~ 146 (334)
|..+++++++++++ +...++.|.+|+..++... .+.. .... .+.+++++++|+++++..++.|.+||... ..
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~-~~~~---~p~~i~~~~~g~l~v~~~~~~i~~~d~~~--~~ 98 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPF-NGLY---QPQGLAVDGAGTVYVTDFNNRVVTLAAGS--NN 98 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCC-CSCC---SCCCEEECTTCCEEEEETTTEEEEECTTC--SC
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEee-CCcC---CcceeEECCCCCEEEEcCCCEEEEEeCCC--ce
Confidence 34455688998777 5467889999997654432 2211 1111 57899999999866555588999999874 33
Q ss_pred eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEI 226 (334)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 226 (334)
... ........+.+++++++|. ++++...++.|.+|+..+.............+.+++++|+|+++++.. .++.|
T Consensus 99 ~~~---~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i 173 (270)
T 1rwi_B 99 QTV---LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT-DNNRV 173 (270)
T ss_dssp CEE---CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG-GGTEE
T ss_pred Eee---eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC-CCCEE
Confidence 322 1112235688999999998 777777789999998655544332223334677899999998666665 67899
Q ss_pred EEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305 227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306 (334)
Q Consensus 227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 306 (334)
.+||... ......... ....+..++++++|.++++...++.|.+|+..... .......+...+.+
T Consensus 174 ~~~~~~~-~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 174 VKLEAES-NNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT------------STVLPFTGLNTPLA 238 (270)
T ss_dssp EEECTTT-CCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC------------CEECCCCSCSCEEE
T ss_pred EEEecCC-CceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc------------ceeeccCCCCCcee
Confidence 9999875 322211111 12456788999999777777778899999987642 21111222346789
Q ss_pred eeeccCCCcccceeeEEeeecceeeee
Q psy2305 307 VRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 307 ~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+++ +|++ +++++...+++|.+
T Consensus 239 i~~--~~~g----~l~v~~~~~~~v~~ 259 (270)
T 1rwi_B 239 VAV--DSDR----TVYVADRGNDRVVK 259 (270)
T ss_dssp EEE--CTTC----CEEEEEGGGTEEEE
T ss_pred EEE--CCCC----CEEEEECCCCEEEE
Confidence 999 9999 98888888888764
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.79 E-value=2.8e-15 Score=132.52 Aligned_cols=281 Identities=11% Similarity=0.083 Sum_probs=181.4
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECC--CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec----CC
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID----GF 76 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s----~~ 76 (334)
.+..+.|+|||+++++++.|+.|.+||+. +.+.. ..+.. +... ..++|+ ||
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--------------~~i~~--G~~P-------~~ia~s~~~~pD 254 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--------------AEIKI--GSEA-------RSIETSKMEGWE 254 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--------------EEEEC--CSEE-------EEEEECCSTTCT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--------------EEEec--CCCC-------ceeEEccccCCC
Confidence 35689999999999999999999999996 55543 22222 1222 335558 69
Q ss_pred CcEEEEeeC-CCcEEEEeCCCCeeeEEEcCcccc-c----c-ccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCee
Q psy2305 77 TSYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQV-D----E-VTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGREC 147 (334)
Q Consensus 77 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~----~-~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~ 147 (334)
|+++++++. ++.|.++|..+.+.+..+...... + + ...+..+..++++..++.. . .|.|.++|.... ...
T Consensus 255 Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~-~~~ 333 (567)
T 1qks_A 255 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL-NNL 333 (567)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS-SEE
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC-ccc
Confidence 998887765 589999999999988877643210 0 0 1157789999988776655 3 799999998752 222
Q ss_pred eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-----CCCCeEEEEEccCCcEE-Eeeec
Q psy2305 148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-----HNGGITHLEFSSNGILL-FSGAR 221 (334)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l-~~~~~ 221 (334)
.. ..........++.|+|++++++++...++.|.++|+.+++.+..+.. |.+.-..+ ++|++..+ ++...
T Consensus 334 ~v---~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~ 409 (567)
T 1qks_A 334 KT---TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM 409 (567)
T ss_dssp EE---EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred ee---eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence 21 12223445778999999993344455689999999999987766543 33222222 57875544 44431
Q ss_pred CCCeEEEEEccCCC------ccceeecccccCCceEEEEecCCCceEEeeec-------CCcEEEEeCCCCCCCCCCCcc
Q psy2305 222 KDCEIICWDLRNPG------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-------NGDLSIWNVNTSNLPSSPYEE 288 (334)
Q Consensus 222 ~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~ 288 (334)
.++.|.++|....+ +.+.++... ......+..+|++++|.+... .++|.++|+.+.+.- .
T Consensus 410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~----g- 482 (567)
T 1qks_A 410 GDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD----G- 482 (567)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS----S-
T ss_pred CCCeEEEecCCCCCCccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc----c-
Confidence 36899999998622 234444432 222233668999999887652 358999999875110 0
Q ss_pred cccccccee--------cccccccceeeeccCCCcccceeeEEee
Q psy2305 289 SVQEPLYKF--------SAHQDCTNGVRWKHHKFERDLLVADATC 325 (334)
Q Consensus 289 ~~~~~~~~~--------~~~~~~i~~~~~~~s~~~~~~~~~l~t~ 325 (334)
..+....+ ......+..+.| +|+| +.+..+
T Consensus 483 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~G----~~~~~s 520 (567)
T 1qks_A 483 -SDPEFKTLPIAEWAGITEGQPRVVQGEF--NKDG----TEVWFS 520 (567)
T ss_dssp -SCCCEEEECHHHHHTCCSSCCEEEEEEE--CTTS----SEEEEE
T ss_pred -cCCCcEEeccccccccCCCCcceEeeeE--CCCC----CEEEEE
Confidence 00111122 112346889999 9999 765555
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.79 E-value=6.1e-17 Score=148.11 Aligned_cols=242 Identities=10% Similarity=-0.044 Sum_probs=159.1
Q ss_pred ceeEEEEcCCCcEEE-----EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 3 IEEDVDEAPDGTCLL-----TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~-----~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
.+.+++|||||++|| .|+.+..|++||+.+++... ...+. ...... ++|+|||
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------~~~~~---~~~~~~-------~~wspDg 179 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------VDVIE---GGKYAT-------PKWTPDS 179 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------SCCBS---CCTTCC-------CEECTTS
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------CcccC---cccccc-------eEEecCC
Confidence 478999999999998 45556799999999887530 00111 011123 4458899
Q ss_pred cEEEEeeCCCc-------------EEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee-CC----cEEE
Q psy2305 78 SYFLCSSMYAP-------------IHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS----EVKI 137 (334)
Q Consensus 78 ~~l~~~~~d~~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~----~i~i 137 (334)
+.|+.++.|.. |++|++.++.. ...+....+.. .+..+.|+|||++|+.+. ++ .|.+
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPT---TFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTT---CEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCE---EEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 99999988766 99999988762 23333322211 678999999999988654 44 5555
Q ss_pred EEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee---cCCeEEEEECCCCCc--eEeeccC--CCCeEEEEEc
Q psy2305 138 FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT---YSKIIGLFSDSDGRP--LFFLKGH--NGGITHLEFS 210 (334)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~i~~~~~~ 210 (334)
++.. +.... .+..+...+....+ ++|. +++... .++.|.+||+.+++. ...+..+ ...+..++|+
T Consensus 257 ~~~~--~~~~~----~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 257 KRPG--EKDFR----LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp ECTT--CSSCE----EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred EcCC--CCceE----EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 5543 22233 23444455566666 6777 666554 358899999987753 2333333 4567888888
Q ss_pred cCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEee----ecCCcEEEEeCCCCC
Q psy2305 211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG----NTNGDLSIWNVNTSN 280 (334)
Q Consensus 211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~ 280 (334)
++.++++.. .|+..++|.+...+.....+..+ ....+..++++|+++.++.. ...++|++||+.+++
T Consensus 329 -~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 329 -GGHLSLEYL-KDATSEVRVATLKGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp -TTEEEEEEE-ETTEEEEEEEETTCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -CCEEEEEEE-ECCEEEEEEEeCCCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 677778887 79998888776434444444322 13445567789999777633 335789999998864
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.78 E-value=8.2e-16 Score=124.20 Aligned_cols=220 Identities=11% Similarity=-0.018 Sum_probs=160.3
Q ss_pred CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305 12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL 91 (334)
Q Consensus 12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i 91 (334)
.+++|++++.++.|.+||.++++... .+..+....+.++ .++|+|++++ +.++.|..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w--------------~~~~~~~~~~~~~-------~~~pdG~ilv--s~~~~V~~ 60 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW--------------EYPLEKGWECNSV-------AATKAGEILF--SYSKGAKM 60 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE--------------EEECCTTCCCCEE-------EECTTSCEEE--ECBSEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE--------------EeCCCccCCCcCe-------EECCCCCEEE--eCCCCEEE
Confidence 46789999999999999998988762 3332211233343 4478999888 34678999
Q ss_pred EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccc--cccccceEEEEEc
Q psy2305 92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKP--WFRKNIVSAIAIN 167 (334)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~ 167 (334)
||. +++.+..+..... ..+.++.+.++|+.+++.. ++.+..+|.. ++.+....+.. ..+......+++.
T Consensus 61 ~d~-~G~~~W~~~~~~~----~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 61 ITR-DGRELWNIAAPAG----CEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp ECT-TSCEEEEEECCTT----CEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred ECC-CCCEEEEEcCCCC----ccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccccCceEC
Confidence 998 8999888876321 1678999999999999765 4556666653 76655432111 1222345567889
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccccc-
Q psy2305 168 PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS- 246 (334)
Q Consensus 168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~- 246 (334)
++|+ ++++...++.|..||.+ ++.+.++... ....++...++|+.++++. .++.|..+|..+ ++.+.++.....
T Consensus 134 ~~G~-~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~t-G~~~w~~~~~~~~ 208 (276)
T 3no2_A 134 KKGN-YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLES-NRIVRRVNANDIE 208 (276)
T ss_dssp TTSC-EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTT-CCEEEEEEGGGSB
T ss_pred CCCC-EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcC-CcEEEEecCCCCC
Confidence 9999 99999999999999987 9998888754 3456778889999999888 788999999987 787777764321
Q ss_pred ---CCceEEEEecCCCceEEeee
Q psy2305 247 ---TNQRVYFDLTSCSNYLLSGN 266 (334)
Q Consensus 247 ---~~~~~~~~~s~~~~~l~~~~ 266 (334)
...+..+...++|.++++..
T Consensus 209 ~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 209 GVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCCCSEEEEEEECTTSCEEEEEE
T ss_pred CccccccccceEcCCCCEEEEec
Confidence 12356677889999888764
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=6.4e-16 Score=128.37 Aligned_cols=266 Identities=10% Similarity=-0.051 Sum_probs=169.9
Q ss_pred CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee
Q psy2305 21 NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK 100 (334)
Q Consensus 21 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~ 100 (334)
.++.|.+||..+++....+..... ....+....++.+ . +++++++...++.|.+||..+++.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n---------~~~lg~~~~~i~~-------~-~~~lyv~~~~~~~v~viD~~t~~~~ 77 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRAN---------GFKLGDVAQSMVI-------R-DGIGWIVVNNSHVIFAIDINTFKEV 77 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHH---------SSCCBSCEEEEEE-------E-TTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhc---------CcccCccceEEEE-------E-CCEEEEEEcCCCEEEEEECcccEEE
Confidence 478999999998876521100000 0001122333333 2 4556666667889999999999998
Q ss_pred EEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccc-cccccceEEEEEcCCCCcEEEEee
Q psy2305 101 ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKP-WFRKNIVSAIAINPVHPDICALGT 178 (334)
Q Consensus 101 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~ 178 (334)
..+.... .+..++++++++.+++. .++.|.+||+.+ ++.....+... .+.......+++ .++. ++++..
T Consensus 78 ~~i~~~~------~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~-~~~~-lyv~~~ 148 (328)
T 3dsm_A 78 GRITGFT------SPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ-YGKY-VYVNCW 148 (328)
T ss_dssp EEEECCS------SEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE-ETTE-EEEEEC
T ss_pred EEcCCCC------CCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCCccccCCCcceEEE-ECCE-EEEEcC
Confidence 8885322 67899999998555555 389999999986 44433221100 001114556777 3443 444433
Q ss_pred -cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC----------CeEEEEEccCCCccceeecccccC
Q psy2305 179 -YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD----------CEIICWDLRNPGCILHTFPRQVST 247 (334)
Q Consensus 179 -~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~ 247 (334)
.++.|.++|+++++.+..+... .....++++|+|++++++. .+ +.|.++|..+ ++....+... ..
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~-~g 224 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFK-LG 224 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTT-TEEEEEEECC-TT
T ss_pred CCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCC-CeEEEEEecC-CC
Confidence 4889999999999888777643 3456899999999777665 44 7899999987 5555454422 12
Q ss_pred CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee--
Q psy2305 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC-- 325 (334)
Q Consensus 248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~-- 325 (334)
.....++++|++++|+++.. .|.+||..+++.. ....+.........+++ +|++. .++++.
T Consensus 225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~----------~~~~~~~~~~~p~gi~v--dp~~g---~lyva~~~ 287 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP----------VRPFLEFRDTKYYGLTV--NPNNG---EVYVADAI 287 (328)
T ss_dssp CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC----------SSCSBCCCSSCEEEEEE--CTTTC---CEEEEECT
T ss_pred CCceeEEEecCCCEEEEEcc--EEEEEECCCCcee----------eeeeecCCCCceEEEEE--cCCCC---eEEEEccc
Confidence 35678999999998887754 8999999887421 11111212346788999 99441 556665
Q ss_pred --ecceeeee
Q psy2305 326 --SGQITNVK 333 (334)
Q Consensus 326 --~~d~~i~~ 333 (334)
..++.|.+
T Consensus 288 ~y~~~~~V~v 297 (328)
T 3dsm_A 288 DYQQQGIVYR 297 (328)
T ss_dssp TSSSEEEEEE
T ss_pred ccccCCEEEE
Confidence 56666653
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=1.1e-15 Score=126.92 Aligned_cols=255 Identities=6% Similarity=-0.027 Sum_probs=166.8
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
...+++. +++.+++...++.|.+||..+++.. ..+. ....... ++++++++++++.
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~--------------~~i~--~~~~p~~-------i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV--------------GRIT--GFTSPRY-------IHFLSDEKAYVTQ 101 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE--------------EEEE--CCSSEEE-------EEEEETTEEEEEE
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE--------------EEcC--CCCCCcE-------EEEeCCCeEEEEE
Confidence 4567774 3445555566799999999998875 2332 1233334 4446788655555
Q ss_pred eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305 84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIV 161 (334)
Q Consensus 84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 161 (334)
..++.|.+||..+++....+...........+..+++ .+++.+++.. ++.|.++|+.+ ++.... ... ....
T Consensus 102 ~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~----i~~-g~~p 174 (328)
T 3dsm_A 102 IWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDE----LTI-GIQP 174 (328)
T ss_dssp BSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEE----EEC-SSCB
T ss_pred CCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEE----EEc-CCCc
Confidence 4789999999999988877764331111113456777 4444444442 78999999986 444443 221 2345
Q ss_pred EEEEEcCCCCcEEEEeecC----------CeEEEEECCCCCceEeeccC-CCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305 162 SAIAINPVHPDICALGTYS----------KIIGLFSDSDGRPLFFLKGH-NGGITHLEFSSNGILLFSGARKDCEIICWD 230 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd 230 (334)
..++++|+|+ +++++..+ +.|.++|..+++....+... ......++++|+++.|+++. . .|.+||
T Consensus 175 ~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~--~v~~~d 250 (328)
T 3dsm_A 175 TSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N--DIWRMP 250 (328)
T ss_dssp CCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S--SEEEEE
T ss_pred cceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c--EEEEEE
Confidence 6889999998 77766554 78999999988877666532 23678999999999998876 4 899999
Q ss_pred ccCCCccce-eecccccCCceEEEEecCC-CceEEee----ecCCcEEEEeCCCCCCCCCCCccccccccceeccccccc
Q psy2305 231 LRNPGCILH-TFPRQVSTNQRVYFDLTSC-SNYLLSG----NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT 304 (334)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~-~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 304 (334)
..+ ++... .+.. ........++++|+ +.++++. ..++.|.+||.. + +.+..+... ...
T Consensus 251 ~~t-~~~~~~~~~~-~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g------------~~~~~i~~G-~~P 314 (328)
T 3dsm_A 251 VEA-DRVPVRPFLE-FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G------------KLIDEFYVG-IIP 314 (328)
T ss_dssp TTC-SSCCSSCSBC-CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C------------CEEEEEEEE-ESE
T ss_pred CCC-Cceeeeeeec-CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C------------CEEEEEEec-cCc
Confidence 976 44321 1111 11345778999994 5555555 567899999998 6 556655432 233
Q ss_pred ceeee
Q psy2305 305 NGVRW 309 (334)
Q Consensus 305 ~~~~~ 309 (334)
..++|
T Consensus 315 ~~~~~ 319 (328)
T 3dsm_A 315 GAFCW 319 (328)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 55555
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=1.9e-16 Score=144.90 Aligned_cols=228 Identities=6% Similarity=-0.062 Sum_probs=148.1
Q ss_pred eeEEEEEEecccceecCCCcEEEE-----eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C
Q psy2305 59 GIIYDYVWYPKTSSIDGFTSYFLC-----SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L 132 (334)
Q Consensus 59 ~~v~~~~~~~~~~~~s~~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d 132 (334)
..+..++| ||||++|+. |+.+..|++||+.+++.+. .. +.... ....++|+|||+.|+.++ +
T Consensus 121 ~~~~~~~~-------SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~--~~~~~-~~~~~~wspDg~~l~~~~~d 188 (695)
T 2bkl_A 121 VSLGTWAV-------SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VD--VIEGG-KYATPKWTPDSKGFYYEWLP 188 (695)
T ss_dssp EEEEEEEE-------CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SC--CBSCC-TTCCCEECTTSSEEEEEECC
T ss_pred EEEEEEEE-------CCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--Cc--ccCcc-cccceEEecCCCEEEEEEec
Confidence 34666566 789999984 3445689999999987641 11 11100 126899999999998775 5
Q ss_pred Cc-------------EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC----eEEEEECCCCCceE
Q psy2305 133 SE-------------VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK----IIGLFSDSDGRPLF 195 (334)
Q Consensus 133 ~~-------------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~ 195 (334)
.. |++|++.+........ .....+...+..+.|+|+|+ +|+..+.++ .|++++..+++ ..
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv-~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~-~~ 265 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVV-HERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKD-FR 265 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCEEE-ECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSS-CE
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhceEE-EecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCc-eE
Confidence 54 9999998632111110 02334556788999999999 777666555 67777765554 44
Q ss_pred eeccCCCCeEEEEEccCCcEEEeeecC---CCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCCc
Q psy2305 196 FLKGHNGGITHLEFSSNGILLFSGARK---DCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD 270 (334)
Q Consensus 196 ~~~~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 270 (334)
.+..+...+....+ ++|. |+..+.. ++.|.+||+.+ +.. ...+..+.....+..++|+ ++.++++...|+.
T Consensus 266 ~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 55556556666666 6777 5555511 57899999876 332 2334333223456667787 7788888889998
Q ss_pred EEEEeCC-CCCCCCCCCccccccccceeccc-ccccceeeeccCCCcccceeeEE
Q psy2305 271 LSIWNVN-TSNLPSSPYEESVQEPLYKFSAH-QDCTNGVRWKHHKFERDLLVADA 323 (334)
Q Consensus 271 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~s~~~~~~~~~l~ 323 (334)
.+||.+. .+ +....+..+ .+.+..+.+ +|++ +.|+
T Consensus 342 ~~l~~~~~~g------------~~~~~l~~~~~~~v~~~~~--s~d~----~~l~ 378 (695)
T 2bkl_A 342 SEVRVATLKG------------KPVRTVQLPGVGAASNLMG--LEDL----DDAY 378 (695)
T ss_dssp EEEEEEETTC------------CEEEECCCSSSSEECCCBS--CTTC----SEEE
T ss_pred EEEEEEeCCC------------CeeEEecCCCCeEEEEeec--CCCC----CEEE
Confidence 8888654 23 333444444 567888999 9988 6665
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.77 E-value=1.7e-14 Score=118.07 Aligned_cols=273 Identities=10% Similarity=0.110 Sum_probs=182.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee-eeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI-KEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
..+.+++++++|+.+++...++.|.+|+.. ++.. .+.. .....+.+++ ++++++++
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------~~~~~~~~~~~~~i~-------~~~~g~l~ 76 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------EFEVPTPDAKVMCLI-------VSSLGDIW 76 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------EEECSSTTCCEEEEE-------ECTTSCEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------EEECCCCCCcceeEE-------ECCCCCEE
Confidence 357889999999977777678999999987 5443 1111 1113344444 47789887
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
++...++.|..+|.. ++.. .+...... ..+..+++.++|+++++.. ++.|..+|.. ++.... .......
T Consensus 77 v~~~~~~~v~~~d~~-g~~~-~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~---~~~~~~~ 146 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGFT-EYPLPQPD---SGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEY---DLPNKGS 146 (300)
T ss_dssp EEETTTTEEEEECTT-SCEE-EEECSSTT---CCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEE---ECSSTTC
T ss_pred EEecCCCeEEEECCC-CCeE-EecCCCCC---CCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEc---cCCCCCC
Confidence 777667889999987 6543 23221111 1688999999998877776 7889999876 433321 2233445
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
.+.++++.++++ +.++...++.|..||. +++.... +..+...+..+++.++|+..++.. ..+.|.+||.. +...
T Consensus 147 ~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~--g~~~ 221 (300)
T 2qc5_A 147 YPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITTT--GEIS 221 (300)
T ss_dssp CEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECTT--CCEE
T ss_pred CceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcCC--CcEE
Confidence 788999999998 7776666789999998 5554332 223445688999999997666665 57789999983 3322
Q ss_pred eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305 239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL 318 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~ 318 (334)
. +........+..++++++|+++++...++.|..|+.. +. .....+......+.++++ .+++
T Consensus 222 ~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-----------~~~~~~~~~~~~~~~i~~--~~~g--- 283 (300)
T 2qc5_A 222 E-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-----------IQEYQLQTENAEPHGITF--GKDG--- 283 (300)
T ss_dssp E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----------EEEEECCSTTCCCCCEEE--CTTS---
T ss_pred E-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-----------EEEEECCccCCccceeEe--CCCC---
Confidence 2 2111124456788999999877776667899999983 31 111222323456889999 9999
Q ss_pred eeeEEeeecceeee
Q psy2305 319 LVADATCSGQITNV 332 (334)
Q Consensus 319 ~~~l~t~~~d~~i~ 332 (334)
.++++.. .+.++
T Consensus 284 -~l~v~~~-~~i~~ 295 (300)
T 2qc5_A 284 -SVWFALK-CKIGK 295 (300)
T ss_dssp -CEEEECS-SEEEE
T ss_pred -CEEEEcc-CceEE
Confidence 8766665 34443
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.76 E-value=5.5e-16 Score=125.23 Aligned_cols=213 Identities=12% Similarity=0.010 Sum_probs=161.9
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccccc
Q psy2305 76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPW 155 (334)
Q Consensus 76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 155 (334)
.+++|++++.++.|.+||.++|+.+..+..+.. . .+.++.++|+|++|+ +.++.|..||. + ++.+.. +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~---~~~~~~~~pdG~ilv-s~~~~V~~~d~-~-G~~~W~----~~ 72 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-W---ECNSVAATKAGEILF-SYSKGAKMITR-D-GRELWN----IA 72 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-C---CCCEEEECTTSCEEE-ECBSEEEEECT-T-SCEEEE----EE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-C---CCcCeEECCCCCEEE-eCCCCEEEECC-C-CCEEEE----Ec
Confidence 457899999999999999999999998876431 1 578999999999888 45778999998 4 776664 33
Q ss_pred cc-ccceEEEEEcCCCCcEEEEeec-CCeEEEEECCCCCceEeecc------CCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305 156 FR-KNIVSAIAINPVHPDICALGTY-SKIIGLFSDSDGRPLFFLKG------HNGGITHLEFSSNGILLFSGARKDCEII 227 (334)
Q Consensus 156 ~~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 227 (334)
.+ ...+.++.+.|+|+ ++++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++.. .++.|.
T Consensus 73 ~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~ 149 (276)
T 3no2_A 73 APAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVR 149 (276)
T ss_dssp CCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEE
T ss_pred CCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEE
Confidence 22 34688999999999 8887776 788888885 7777766541 222345667899999999998 899999
Q ss_pred EEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc------
Q psy2305 228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ------ 301 (334)
Q Consensus 228 iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------ 301 (334)
.||.. ++.+.++... .........++|++++++..+++|..+|..++ +.+.++..+.
T Consensus 150 ~~d~~--G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG------------~~~w~~~~~~~~~~~l 212 (276)
T 3no2_A 150 EIAPN--GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN------------RIVRRVNANDIEGVQL 212 (276)
T ss_dssp EECTT--SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTC------------CEEEEEEGGGSBSCCC
T ss_pred EECCC--CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC------------cEEEEecCCCCCCccc
Confidence 99986 7777777653 23344667899999999988889999999988 5555554321
Q ss_pred cccceeeeccCCCcccceeeEEee
Q psy2305 302 DCTNGVRWKHHKFERDLLVADATC 325 (334)
Q Consensus 302 ~~i~~~~~~~s~~~~~~~~~l~t~ 325 (334)
..+..+.. .+++ .++++.
T Consensus 213 ~~~~~~~~--~~~G----~i~v~~ 230 (276)
T 3no2_A 213 FFVAQLFP--LQNG----GLYICN 230 (276)
T ss_dssp SEEEEEEE--CTTS----CEEEEE
T ss_pred cccccceE--cCCC----CEEEEe
Confidence 23677778 8888 777776
No 196
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=2.2e-17 Score=140.78 Aligned_cols=222 Identities=5% Similarity=-0.121 Sum_probs=144.0
Q ss_pred ccceecCCCcEEEEeeCC---CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC
Q psy2305 69 KTSSIDGFTSYFLCSSMY---APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG 144 (334)
Q Consensus 69 ~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~ 144 (334)
..++|+|||++|+..... ..|.+||+.+++.......... ....+.|+|||+.|+... ++.|.+||+.. +
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~ 112 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGD-----NTFGGFISTDERAFFYVKNELNLMKVDLET-L 112 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCB-----CTTTCEECTTSSEEEEEETTTEEEEEETTT-C
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCC-----ccccceECCCCCEEEEEEcCCcEEEEECCC-C
Confidence 346679999998876543 3688889988876543322111 223478999999998776 77899999986 3
Q ss_pred CeeeeecccccccccceEE-------------------EEEcCCCCcEEEEe-----ecCCeEEEEECCCCCceEeeccC
Q psy2305 145 RECVSRNLKPWFRKNIVSA-------------------IAINPVHPDICALG-----TYSKIIGLFSDSDGRPLFFLKGH 200 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~ 200 (334)
.... ....+...... +.|+|+++ .++.. ..+..|++||+.+++..... .+
T Consensus 113 ~~~~----~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~ 186 (396)
T 3c5m_A 113 EEQV----IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD 186 (396)
T ss_dssp CEEE----EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred CcEE----EEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence 3322 11212222112 35678877 55543 35678999999888765444 46
Q ss_pred CCCeEEEEEcc-CCcEEEeeecCC------CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----
Q psy2305 201 NGGITHLEFSS-NGILLFSGARKD------CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN----- 268 (334)
Q Consensus 201 ~~~i~~~~~~~-~~~~l~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----- 268 (334)
...+..+.|+| +++.|+..+ .+ ..|.+||+.. +. ...+..+.....+..+.|+|+|++|+.++.+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred CcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 67889999999 888777766 33 3688888764 33 3333322113346678999999988777543
Q ss_pred CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC-CcccceeeEEeee
Q psy2305 269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK-FERDLLVADATCS 326 (334)
Q Consensus 269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~-~~~~~~~~l~t~~ 326 (334)
+.|++||+.+++. ..+..+.+ .. +.| +| ++ ++|++++
T Consensus 264 ~~l~~~d~~~g~~----------~~l~~~~~----~~-~~~--s~~dg----~~l~~~~ 301 (396)
T 3c5m_A 264 RVIYKANPETLEN----------EEVMVMPP----CS-HLM--SNFDG----SLMVGDG 301 (396)
T ss_dssp EEEEEECTTTCCE----------EEEEECCS----EE-EEE--ECSSS----SEEEEEE
T ss_pred ceEEEEECCCCCe----------EEeeeCCC----CC-CCc--cCCCC----ceEEEec
Confidence 4499999988631 11222221 22 889 99 99 8887754
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.75 E-value=6.2e-15 Score=121.58 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=159.2
Q ss_pred CceeEEEEcCCCcEEEE-------eeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee----eeceeEEEEEEeccc
Q psy2305 2 DIEEDVDEAPDGTCLLT-------NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI----KEGGIIYDYVWYPKT 70 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~-------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~ 70 (334)
....+++|+++|.++++ +..++.|.+|+..+++.. .+.. .+...+.++.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------------~~~~~~~~~~~~~~~~i~~---- 78 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT---------------VICKPEVNGYGGIPAGCQC---- 78 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE---------------EEECCEETTEECCEEEEEE----
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE---------------EEEecccCCCCCCCceEEE----
Confidence 34678999999988877 677899999998877653 1111 01233445444
Q ss_pred ceecCC-CcEEEEeeCCCcEEEEeCCCCeeeEE-EcCccccccccceeEEEEcCCCCEEEEee-C---------------
Q psy2305 71 SSIDGF-TSYFLCSSMYAPIHLWDSVGGEIKAT-YRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--------------- 132 (334)
Q Consensus 71 ~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--------------- 132 (334)
+++ ++++++.. .+.|.+||.. ++.... ..... ......+..++++++|+++++.. +
T Consensus 79 ---~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 79 ---DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSE-GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp ---CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTT-SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred ---ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCC-CccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence 778 77555554 4469999987 665432 22111 11112578999999998877664 4
Q ss_pred CcEEEEEcCCCCCeeeeecccccccccceEEEEEc----CCCCcEEEEeecCCeEEEEECC-CCC-----ceEeeccCC-
Q psy2305 133 SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN----PVHPDICALGTYSKIIGLFSDS-DGR-----PLFFLKGHN- 201 (334)
Q Consensus 133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~-~~~-----~~~~~~~~~- 201 (334)
+.|..|+.. +.... ...+......++++ |+++.++++...++.|.+||+. +++ ....+..+.
T Consensus 153 ~~l~~~~~~--g~~~~-----~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 153 GSIYCFTTD--GQMIQ-----VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp EEEEEECTT--SCEEE-----EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred CeEEEECCC--CCEEE-----eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 455555543 33221 22333456889999 9997234444567899999986 343 222333343
Q ss_pred CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEE-eeecCCcEEEEeCCCC
Q psy2305 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTS 279 (334)
Q Consensus 202 ~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~ 279 (334)
..+..++++++|+++++.. .++.|.+||..+ ++....+..+ ...+.+++|+|+|+.|+ +...++.|..|++...
T Consensus 226 ~~p~~i~~d~~G~l~v~~~-~~~~i~~~d~~~-g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANW-GSSHIEVFGPDG-GQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEE-TTTEEEEECTTC-BSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCceEECCCCCEEEEEc-CCCEEEEEcCCC-CcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 5678999999998888777 688999999875 4544555433 35678899999999554 4455678999998764
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.73 E-value=3e-15 Score=137.88 Aligned_cols=242 Identities=10% Similarity=-0.036 Sum_probs=156.5
Q ss_pred ceeEEEEcCCCcEEEEeeCC-----CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 3 IEEDVDEAPDGTCLLTNSND-----NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
.+..++|||||++||.++.+ ..|++||+.+++... ... +...+. .++|+||
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~---------------~~~-~~~~~~-------~~~wspD- 219 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA---------------DEL-KWVKFS-------GLAWLGN- 219 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE---------------EEE-EEEESC-------CCEESTT-
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC---------------ccC-CCceec-------cEEEECC-
Confidence 46789999999999887643 469999999987641 111 111112 3455889
Q ss_pred cEEEEeeCCCc--------------EEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee-CC-----cE
Q psy2305 78 SYFLCSSMYAP--------------IHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS-----EV 135 (334)
Q Consensus 78 ~~l~~~~~d~~--------------i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~-----~i 135 (334)
+.|+.++.++. |++|++.++.. ...+....+. ..+..+.|+|||++|+... ++ .|
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP---KRGHGASVSSDGRWVVITSSEGTDPVNTV 296 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT---TCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC---eEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence 88888876654 88999877652 2333332221 1478999999999888554 43 79
Q ss_pred EEEEcCCCCCe-eeeecccccccccceEEEEEcCCCCcEEEEeec----CCeEEEEECCCC--CceEeeccCCCCeEEEE
Q psy2305 136 KIFSTDRPGRE-CVSRNLKPWFRKNIVSAIAINPVHPDICALGTY----SKIIGLFSDSDG--RPLFFLKGHNGGITHLE 208 (334)
Q Consensus 136 ~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~ 208 (334)
.+||+..+... .. .+..+...+.... +|+|+ .|+..+. ++.|.+||+.++ +....+..+...+..+.
T Consensus 297 ~~~d~~~~~~~~~~----~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~ 370 (741)
T 1yr2_A 297 HVARVTNGKIGPVT----ALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG 370 (741)
T ss_dssp EEEEEETTEECCCE----EEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred EEEECCCCCCcccE----EecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence 99999852112 22 2333444444443 48888 6666654 456999999875 23333444555566788
Q ss_pred EccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEee----ecCCcEEEEeCCCCC
Q psy2305 209 FSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG----NTNGDLSIWNVNTSN 280 (334)
Q Consensus 209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~ 280 (334)
++ ++.++++.. .|+..+||.+...+.....+..+ ....+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 371 ~~-~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 371 IA-GNRLFASYI-HDAKSQVLAFDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EE-BTEEEEEEE-ETTEEEEEEEETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EE-CCEEEEEEE-ECCEEEEEEEeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87 566777777 79988888766334444544422 24557778899998866632 335789999998763
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.73 E-value=9.1e-15 Score=120.58 Aligned_cols=235 Identities=10% Similarity=0.068 Sum_probs=152.6
Q ss_pred ceecCCCcEEEE-------eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC-CCEEEEeeCCcEEEEEcCC
Q psy2305 71 SSIDGFTSYFLC-------SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGFLSEVKIFSTDR 142 (334)
Q Consensus 71 ~~~s~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~d~~i~i~d~~~ 142 (334)
++|+++++++++ ...++.|.+||..+++....... ........+..++++++ ++++++...+.|.+||..
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~- 100 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD- 100 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-ccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-
Confidence 444778988877 56788999999888776432220 00001126889999999 776666555578899987
Q ss_pred CCCeeee-ecccccccccceEEEEEcCCCCcEEEEeecC---------------CeEEEEECCCCCceEeeccCCCCeEE
Q psy2305 143 PGRECVS-RNLKPWFRKNIVSAIAINPVHPDICALGTYS---------------KIIGLFSDSDGRPLFFLKGHNGGITH 206 (334)
Q Consensus 143 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~i~~ 206 (334)
++.... ...........+.+++++++|+ ++++...+ +.|..||.. ++... +..+......
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~ 176 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNG 176 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEE
T ss_pred -CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcce
Confidence 333221 0000011224588999999998 66665544 578888865 54433 3333445688
Q ss_pred EEEc----cCCcEEEeeecCCCeEEEEEccCCCcc-----ceeecccccC-CceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305 207 LEFS----SNGILLFSGARKDCEIICWDLRNPGCI-----LHTFPRQVST-NQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276 (334)
Q Consensus 207 ~~~~----~~~~~l~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 276 (334)
++|+ |+++.|+++...++.|.+||+...+.. ...+..+ . .....++++++|+++++...++.|.+||.
T Consensus 177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT--HEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC--SSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC--CCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 9999 999776665425789999998731321 1111111 1 44667889999998888777889999999
Q ss_pred CCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeee-cceee
Q psy2305 277 NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS-GQITN 331 (334)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~-~d~~i 331 (334)
.++ +.+..+..+...+.+++| +|++ +.|..++ .++.|
T Consensus 255 ~~g------------~~~~~~~~~~~~~~~i~~--~~dg----~~l~v~~~~~~~l 292 (314)
T 1pjx_A 255 DGG------------QPKMRIRCPFEKPSNLHF--KPQT----KTIFVTEHENNAV 292 (314)
T ss_dssp TCB------------SCSEEEECSSSCEEEEEE--CTTS----SEEEEEETTTTEE
T ss_pred CCC------------cEeEEEeCCCCCceeEEE--CCCC----CEEEEEeCCCCeE
Confidence 866 444455555567899999 9999 8555444 44444
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.70 E-value=2.1e-14 Score=119.56 Aligned_cols=265 Identities=14% Similarity=0.107 Sum_probs=163.4
Q ss_pred EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
.++++|||++|+++. .++.|.+||..+.+... .+....+... ..--.|..++++|
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~--------------~I~v~~g~r~-~~g~~P~~~a~sp 146 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA--------------DIELPDAPRF-LVGTYPWMTSLTP 146 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE--------------EEEETTCCCC-CBSCCGGGEEECT
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE--------------EEECCCcccc-ccCCCCceEEEcC
Confidence 389999999888775 36789999999988762 2221110000 0001356678899
Q ss_pred CCcEEEEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305 76 FTSYFLCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 76 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 152 (334)
||++++++.. ++.|.++|+.+++.+..+.... . ...+....+.+++.+ ||.+.+.++...++.......
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~ 218 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 218 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecc
Confidence 9999888764 6889999999999998886422 1 112222233444333 677766666543333221100
Q ss_pred cccccccceE-EEEEc-CCCCcEEEEeecCCeEEEEECCCCCc--eEeec---------c-CCCCeEEEEEccCCcEEEe
Q psy2305 153 KPWFRKNIVS-AIAIN-PVHPDICALGTYSKIIGLFSDSDGRP--LFFLK---------G-HNGGITHLEFSSNGILLFS 218 (334)
Q Consensus 153 ~~~~~~~~v~-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~---------~-~~~~i~~~~~~~~~~~l~~ 218 (334)
.+.....++. ...|. ++|+ +++ .+.+|.|++.|+.+... ...+. + ..+....++++|+++.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~dG~-~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV 296 (386)
T 3sjl_D 219 VFHPEDEFLINHPAYSQKAGR-LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 296 (386)
T ss_dssp CCSCTTSCBCSCCEEETTTTE-EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred eeccccccccccceeEcCCCc-EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence 1111112221 23554 6775 444 55689999999976542 22221 0 1223345778999998888
Q ss_pred eecC---------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEee-ecCCcEEEEeCCCCCCCCCCCc
Q psy2305 219 GARK---------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSG-NTNGDLSIWNVNTSNLPSSPYE 287 (334)
Q Consensus 219 ~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 287 (334)
.... .+.|.+.|+.+ .+.+..+.- ...+..+++++|++ +|++. ..++.|.++|..++
T Consensus 297 ~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-------- 364 (386)
T 3sjl_D 297 LVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-------- 364 (386)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC--------
T ss_pred EeccccccccCCCCCEEEEEECCC-CeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC--------
Confidence 6511 25799999998 676776653 23566789999997 66664 45899999999998
Q ss_pred cccccccceecccccccceeeeccCCC
Q psy2305 288 ESVQEPLYKFSAHQDCTNGVRWKHHKF 314 (334)
Q Consensus 288 ~~~~~~~~~~~~~~~~i~~~~~~~s~~ 314 (334)
+.+..+... +.-+.|.+ ++|
T Consensus 365 ----k~~~~i~~~-~~p~~l~~--s~d 384 (386)
T 3sjl_D 365 ----EELRSVNQL-GHGPQVIT--TAD 384 (386)
T ss_dssp ----CEEEEECCC-CSSCCEEE--ECC
T ss_pred ----cEEEEecCC-CCCceeEE--CCc
Confidence 566666542 33456666 654
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.70 E-value=9.9e-15 Score=134.45 Aligned_cols=221 Identities=10% Similarity=-0.019 Sum_probs=141.6
Q ss_pred eecCCCcEEEEeeCC-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC------------
Q psy2305 72 SIDGFTSYFLCSSMY-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS------------ 133 (334)
Q Consensus 72 ~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~------------ 133 (334)
+|||||++|+.++.+ ..|++||+.+++.+.... ... .+..++|+|| +.|+.+. ++
T Consensus 169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~-----~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV-----KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE-----ESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc-----eeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 348899999887543 369999999988754311 111 2357899999 8888664 43
Q ss_pred --cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC-----eEEEEECCCC--CceEeeccCCCCe
Q psy2305 134 --EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-----IIGLFSDSDG--RPLFFLKGHNGGI 204 (334)
Q Consensus 134 --~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~i 204 (334)
.|++|++.+........ .....+...+..+.|+|+|+ +|+..+.++ .|++||+.++ +....+..+...+
T Consensus 242 ~~~v~~~~lgt~~~~~~lv-~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPV-FATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCEEEEEETTSCGGGCEEE-ECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCEEEEEECCCCchhCEEE-eccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 38889987632111110 02223334588999999999 777666543 8999999876 4245555555555
Q ss_pred EEEEEccCCcEEEeeecC----CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC-CC
Q psy2305 205 THLEFSSNGILLFSGARK----DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN-TS 279 (334)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~ 279 (334)
.... +|+|+.|+..+ . ++.|.+||+.........+..+ ....+..+.++ ++.++++...|+..+||.+. .+
T Consensus 320 ~~~~-~~dg~~l~~~s-~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 395 (741)
T 1yr2_A 320 WDFV-DGVGDQLWFVS-GDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG 395 (741)
T ss_dssp EEEE-EEETTEEEEEE-CTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred EEEE-eccCCEEEEEE-CCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 5553 48999888877 4 3459999987621122333322 13345566776 66778888889887777554 23
Q ss_pred CCCCCCCccccccccceecc-cccccceeeeccCCCcccceeeEE
Q psy2305 280 NLPSSPYEESVQEPLYKFSA-HQDCTNGVRWKHHKFERDLLVADA 323 (334)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~s~~~~~~~~~l~ 323 (334)
.....+.. +.+.+..+.+ +|++ +.|+
T Consensus 396 ------------~~~~~l~~~~~~~v~~~~~--s~d~----~~l~ 422 (741)
T 1yr2_A 396 ------------KPAGAVSLPGIGSASGLSG--RPGD----RHAY 422 (741)
T ss_dssp ------------CEEEECBCSSSCEEEEEEC--CBTC----SCEE
T ss_pred ------------CceeeccCCCCeEEEEeec--CCCC----CEEE
Confidence 33344443 3567888999 9998 6555
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.70 E-value=1.6e-13 Score=115.55 Aligned_cols=269 Identities=11% Similarity=-0.049 Sum_probs=173.5
Q ss_pred EcCCCcEEEEeeC--CC---eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 9 EAPDGTCLLTNSN--DN---HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 9 ~sp~~~~l~~~~~--d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
..|+++++++... .. +|.+||..+++.. ..+... ..| .++++||+++++++
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--------------~~i~~g---------~~p-~i~~spDg~~lyv~ 83 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--------------GHVNGG---------FLP-NPVAAHSGSEFALA 83 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE--------------EEecCC---------CCC-CeEECCCCCEEEEE
Confidence 3478887777653 22 8899999988764 222221 123 46679999999888
Q ss_pred e----------CCCcEEEEeCCCCeeeEEEcCc--cccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeee
Q psy2305 84 S----------MYAPIHLWDSVGGEIKATYRPY--NQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECV 148 (334)
Q Consensus 84 ~----------~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~ 148 (334)
. .++.|.+||..+.+.+..+... ...........++|+|||++|++++ ++.|.++| .+ ++...
T Consensus 84 n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~~~ 161 (373)
T 2mad_H 84 STSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSSDD 161 (373)
T ss_pred eccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCEEe
Confidence 5 3678999999988887776542 1000001346899999999999764 47899999 75 55544
Q ss_pred e-ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-----cCCCCe-EEEEEccCCcEEEeeec
Q psy2305 149 S-RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-----GHNGGI-THLEFSSNGILLFSGAR 221 (334)
Q Consensus 149 ~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~l~~~~~ 221 (334)
. .+ ... ++.+.|+++..+++.+.||.+.++|. +++...... ....++ ....+.+++..++..+
T Consensus 162 ~~i~-----~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~- 231 (373)
T 2mad_H 162 QLLS-----SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV- 231 (373)
T ss_pred EEcC-----CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-
Confidence 2 21 111 24566776546777788999999999 777663321 111221 2356677766666666
Q ss_pred CCCeEEEEEccCCC-ccceeeccc--------ccCCceEEEEecCCCceEEeeec----------CCcEEEEeCCCCCCC
Q psy2305 222 KDCEIICWDLRNPG-CILHTFPRQ--------VSTNQRVYFDLTSCSNYLLSGNT----------NGDLSIWNVNTSNLP 282 (334)
Q Consensus 222 ~d~~i~iwd~~~~~-~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 282 (334)
.++.+.+.|+.... .....+... ........+.++|+++.++++.. .+.|.++|+.+.
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--- 308 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--- 308 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---
Confidence 68899999997521 111222100 00122233678999988877643 357999999997
Q ss_pred CCCCccccccccceecccccccceeeeccCCCccccee-eEEeee-cceeee
Q psy2305 283 SSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATCS-GQITNV 332 (334)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~~-~d~~i~ 332 (334)
+.+..+.. ......++| +||+ + +++++. .++.+.
T Consensus 309 ---------~vv~~i~~-g~~p~~i~~--s~Dg----~~~l~v~~~~~~~V~ 344 (373)
T 2mad_H 309 ---------QTSSQISL-GHDVDAISV--AQDG----GPDLYALSAGTEVLH 344 (373)
T ss_pred ---------EEEEEEEC-CCCcCeEEE--CCCC----CeEEEEEcCCCCeEE
Confidence 56666643 335799999 9999 8 777776 466664
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.69 E-value=2.8e-13 Score=110.85 Aligned_cols=228 Identities=9% Similarity=-0.016 Sum_probs=150.8
Q ss_pred eeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 4 EEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 4 V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
-.+..|+|+ +.++++...++.|..||..++... .+ .....+.++++ +++++++++
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------------~~--~~~~~~~~i~~-------~~dG~l~v~ 70 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------------RV--TMDAPVSSVAL-------RQSGGYVAT 70 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------------EE--ECSSCEEEEEE-------BTTSSEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------------EE--eCCCceEEEEE-------CCCCCEEEE
Confidence 357889995 445566667899999999877643 11 12345555555 779995554
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C---------CcEEEEEcCCCCCeeeeecc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L---------SEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------~~i~i~d~~~~~~~~~~~~~ 152 (334)
. ++.|.+||.++++.......... .....+..++++|+|+++++.. . ..-.+|.+...+....
T Consensus 71 -~-~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---- 143 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---- 143 (297)
T ss_dssp -E-TTEEEEEETTTTEEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE----
T ss_pred -E-CCeEEEEECCCCcEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE----
Confidence 3 56799999988876443332111 1112678999999999777542 2 2346666654233222
Q ss_pred cccccccceEEEEEcCCCCcEEEEeecCCeEEEEEC--CCCCc-----eEeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305 153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD--SDGRP-----LFFLKGHNGGITHLEFSSNGILLFSGARKDCE 225 (334)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 225 (334)
........+.++|+|+++.++++.+.++.|..||+ .++.. ...+..+.+....++++++|++.++.. ..+.
T Consensus 144 -~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~ 221 (297)
T 3g4e_A 144 -YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGR 221 (297)
T ss_dssp -EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTE
T ss_pred -EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCE
Confidence 22333456899999999834455666889999997 45543 222333446678999999998777776 6888
Q ss_pred EEEEEccCCCccceeecccccCCceEEEEec-CCCceEEeeec
Q psy2305 226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLT-SCSNYLLSGNT 267 (334)
Q Consensus 226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~ 267 (334)
|.+||..+ ++.+..+... ...+.+++|. |+++.|++++.
T Consensus 222 v~~~d~~t-G~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVT-GKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTT-CCEEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCC-ceEEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 99999986 6666666543 3567889998 88877665543
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=1.7e-13 Score=115.41 Aligned_cols=240 Identities=10% Similarity=-0.009 Sum_probs=155.7
Q ss_pred EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
.++++|||++|+++. .++.|.+||..+.+... .+.......... .-.|..++++|
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~--------------~i~~~~~~~~~~-g~~p~~~~~sp 134 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA--------------DIELPDAPRFDV-GPYSWMNANTP 134 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE--------------EEECCCcccccc-CCCccceEECC
Confidence 789999999998885 36789999998877652 221110000000 01244567799
Q ss_pred CCcEEEEeeC--CCcEEEEeCCCCeeeEE-EcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeee
Q psy2305 76 FTSYFLCSSM--YAPIHLWDSVGGEIKAT-YRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 76 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~ 150 (334)
||++|+++.. ++.|.++| .+++.+.. +... .++.+.|+++..+ +.. ||.+.++|. + ++.....
T Consensus 135 DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~-g~~~~~~ 202 (373)
T 2mad_H 135 NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---------TCYHIHPGAPSTFYLLCAQGGLAKTDH-A-GGAAGAG 202 (373)
T ss_pred CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---------ceEEEEeCCCceEEEEcCCCCEEEEEC-C-CcEEEEE
Confidence 9999998874 47899999 99988777 5431 1355667664443 333 899999999 5 5544211
Q ss_pred cc--cccccccc-eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEeecc----------CCCCeEEEEEccCCcE
Q psy2305 151 NL--KPWFRKNI-VSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKG----------HNGGITHLEFSSNGIL 215 (334)
Q Consensus 151 ~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~----------~~~~i~~~~~~~~~~~ 215 (334)
.. .. ....+ .....+.+++. .++..+..+.+.+.|+..... +..+.- .......+.++|+++.
T Consensus 203 ~~~~~~-~~~~p~~~~~~~~~~~~-~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 203 LVGAML-TAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred eccccc-cCCcceeecceeEecCC-EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 00 01 11122 22345667766 444444788999999865432 222211 1223445789999998
Q ss_pred EEeeecC----------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeee-cCCcEEEEeCCCC
Q psy2305 216 LFSGARK----------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGN-TNGDLSIWNVNTS 279 (334)
Q Consensus 216 l~~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~ 279 (334)
++++. . ++.|.++|..+ .+.+.++.. ......++|+|||+ +++++. .++.|.++|+.++
T Consensus 281 lyV~~-~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 281 IYLLT-SEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEEe-ccCCcccccCCCCeEEEEECCC-CEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 88865 3 35799999987 666666643 33567889999999 777776 4899999999998
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.68 E-value=8.1e-14 Score=114.03 Aligned_cols=223 Identities=10% Similarity=0.021 Sum_probs=143.9
Q ss_pred cCC-CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305 74 DGF-TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 74 s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~ 152 (334)
+++ +.++++...++.|..||..+++. ..+... . .+.+++++++|+++++ .++.|.+||..+ ++.......
T Consensus 21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~-~-----~~~~i~~~~dG~l~v~-~~~~l~~~d~~~-g~~~~~~~~ 91 (297)
T 3g4e_A 21 EEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMD-A-----PVSSVALRQSGGYVAT-IGTKFCALNWKE-QSAVVLATV 91 (297)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCE-EEEECS-S-----CEEEEEEBTTSSEEEE-ETTEEEEEETTT-TEEEEEEEC
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCC-C-----ceEEEEECCCCCEEEE-ECCeEEEEECCC-CcEEEEEec
Confidence 554 55666666788999999987765 333321 1 6889999999995554 467899999875 332211000
Q ss_pred cccccccceEEEEEcCCCCcEEEEeec-----------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec
Q psy2305 153 KPWFRKNIVSAIAINPVHPDICALGTY-----------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR 221 (334)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 221 (334)
........+..++++|+|+ ++++... .+.|..++.. ++. ..+..+......++|+|+++.|+.+..
T Consensus 92 ~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp CTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred CCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCCEEEEecC
Confidence 0011234578999999998 6654322 2345555532 333 333334445688999999997766553
Q ss_pred CCCeEEEEEcc-CCCccc--eeecc-cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305 222 KDCEIICWDLR-NPGCIL--HTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF 297 (334)
Q Consensus 222 ~d~~i~iwd~~-~~~~~~--~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 297 (334)
.++.|.+||+. ..+... ..+.. .........++++++|++.++....+.|..||..++ +.+..+
T Consensus 169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG------------~~~~~i 236 (297)
T 3g4e_A 169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG------------KRLQTV 236 (297)
T ss_dssp GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC------------CEEEEE
T ss_pred CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc------------eEEEEE
Confidence 67899999984 213321 11111 111245667889999988888777888999999977 566677
Q ss_pred cccccccceeeeccC-CCcccceeeEEeee
Q psy2305 298 SAHQDCTNGVRWKHH-KFERDLLVADATCS 326 (334)
Q Consensus 298 ~~~~~~i~~~~~~~s-~~~~~~~~~l~t~~ 326 (334)
..+...+++++| . |++ +.|..++
T Consensus 237 ~~p~~~~t~~~f--~g~d~----~~L~vt~ 260 (297)
T 3g4e_A 237 KLPVDKTTSCCF--GGKNY----SEMYVTC 260 (297)
T ss_dssp ECSSSBEEEEEE--ESGGG----CEEEEEE
T ss_pred ECCCCCceEEEE--eCCCC----CEEEEEc
Confidence 666667899999 8 887 6554443
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.67 E-value=1e-13 Score=118.37 Aligned_cols=233 Identities=9% Similarity=-0.017 Sum_probs=155.6
Q ss_pred cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC--cEEEEEcCCCC
Q psy2305 68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS--EVKIFSTDRPG 144 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~ 144 (334)
|..++++++++++++...++.|++||..++.......... ... ++|+++++.|+++. ++ .|.+++... +
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~------~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~ 204 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK------GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-G 204 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC------BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-T
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC------CCc-eeEecCCCcEEEEecCCCceEEEEEcCC-C
Confidence 5567789999988887778899999998887765554321 334 99999999888775 44 788888775 2
Q ss_pred Ceeeeecccc-cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe----eccCCCCe-E-EEEEccCCcEEE
Q psy2305 145 RECVSRNLKP-WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF----LKGHNGGI-T-HLEFSSNGILLF 217 (334)
Q Consensus 145 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i-~-~~~~~~~~~~l~ 217 (334)
....... .. ......+.+++++|++. .|+.+..++.|+.||..++..... ..++...- . .++|+|++..|+
T Consensus 205 ~~~~~~g-~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 205 WAPTRIG-QLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp TCEEEEE-ECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred ceeEEee-eccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 2222110 01 21445678899999544 455567788999999987653322 22222222 2 899999644444
Q ss_pred eeecCCCeEEEEEccCCCccceeecccc-------------cCCceEEEEecCCCceEEeee-cCCcEEEEeCCCCCCCC
Q psy2305 218 SGARKDCEIICWDLRNPGCILHTFPRQV-------------STNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTSNLPS 283 (334)
Q Consensus 218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 283 (334)
.+....+.|+.|+... . ...+.+.. .-.....++++|+|+++++-. .++.|+.|++.++.
T Consensus 283 v~d~~~~~I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~--- 356 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY--- 356 (409)
T ss_dssp EEETTTTEEEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE---
T ss_pred EEeCCCCEEEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE---
Confidence 4443788999998764 2 22232221 013467799999999777777 78999999977652
Q ss_pred CCCccccccccceeccc---------------ccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305 284 SPYEESVQEPLYKFSAH---------------QDCTNGVRWKHHKFERDLLVADATCSGQITNV 332 (334)
Q Consensus 284 ~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~ 332 (334)
+..+.++ -.....+++ +|++ .++++-..+++|.
T Consensus 357 ----------v~~~~g~~~~~g~~~g~~~~~~~~~P~giav--d~~g----~lyVad~~n~~Ir 404 (409)
T 3hrp_A 357 ----------VSTVAGQVDVASQIDGTPLEATFNYPYDICY--DGEG----GYWIAEAWGKAIR 404 (409)
T ss_dssp ----------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEE--CSSS----EEEEEESTTCEEE
T ss_pred ----------EEEEeCCCCCCCcCCCChhceEeCCceEEEE--cCCC----CEEEEECCCCeEE
Confidence 2222222 235788999 9999 8888888887765
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.66 E-value=8.4e-14 Score=127.19 Aligned_cols=241 Identities=11% Similarity=0.031 Sum_probs=156.2
Q ss_pred ceeEEEEcCCCcEEEEe-----eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305 3 IEEDVDEAPDGTCLLTN-----SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~ 77 (334)
.+..++|||||++||.+ +....|++||+.+++... . .+.... ...++|+ |+
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------------~------~~~~~k--~~~~~Ws-Dg 185 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------------T------PLKDVK--FSGISWL-GN 185 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------------E------EEEEEE--SCCCEEE-TT
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------------c------ccCCce--eccEEEe-CC
Confidence 47788999999998843 334689999999988541 1 111111 1235569 99
Q ss_pred cEEEEeeCCCc-------------EEEEeCCCCee--eEEEcCcc-ccccccceeEEEEcCCCCEEEEe-e----CCcEE
Q psy2305 78 SYFLCSSMYAP-------------IHLWDSVGGEI--KATYRPYN-QVDEVTHAYSLAFSLDGNKIYAG-F----LSEVK 136 (334)
Q Consensus 78 ~~l~~~~~d~~-------------i~iwd~~~~~~--~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~-~----d~~i~ 136 (334)
+.|+.++.+.. |++|++.++.. ...+.... +. .....+.|+|||++|+.. . .+.|.
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH---HRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC---CSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC---eEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 99988887743 99999877643 33333322 11 146789999999988743 2 25899
Q ss_pred EEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC---CeEEEEECCCCCc--eEeeccCCCCeEEEEEcc
Q psy2305 137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS---KIIGLFSDSDGRP--LFFLKGHNGGITHLEFSS 211 (334)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~ 211 (334)
++|+..+..... .+..+....... ++++|..+++....+ +.|..+|+.++.. ...+..|...+. .|++
T Consensus 263 ~~d~~~~~~~~~----~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~ 335 (693)
T 3iuj_A 263 VKDLSQENAPLL----TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS 335 (693)
T ss_dssp EEETTSTTCCCE----EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred EEECCCCCCceE----EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence 999976332333 234444444444 667776344454443 6899999987754 345655666655 8999
Q ss_pred CCcEEEeeecCCC--eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC----CcEEEEeCCCCC
Q psy2305 212 NGILLFSGARKDC--EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN----GDLSIWNVNTSN 280 (334)
Q Consensus 212 ~~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 280 (334)
+++.|+...+.++ .|++||+.. .....+... ....+..+.++++++.|+....+ +.+..||+.+++
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~g--~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYEG--KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTS--CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ECCEEEEEEEECCeeEEEEEECCC--CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 9998887763454 678888763 334444322 23456667788888877655444 789999988763
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=4.2e-13 Score=109.64 Aligned_cols=227 Identities=13% Similarity=0.061 Sum_probs=154.1
Q ss_pred ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS 149 (334)
Q Consensus 71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 149 (334)
++++++|+++++...++.|.+||.. ++... +...... ..+..+++.++|.++++.. ++.|..||.. +.....
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~ 92 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPD---AKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKEY 92 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTT---CCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEE
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCccc---CceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEEE
Confidence 3347899887776667899999987 55433 3211111 2688999999999888776 7889999976 332211
Q ss_pred ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305 150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIIC 228 (334)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 228 (334)
........+.++++.+++. ++++...++.|..||. +++.... +......+..+++.++|+.+++.. .++.|..
T Consensus 93 ---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~ 166 (299)
T 2z2n_A 93 ---TLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN-QNNAIGR 166 (299)
T ss_dssp ---ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET-TTTEEEE
T ss_pred ---eCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC-CCCEEEE
Confidence 1222445788999999998 7777667889999998 5544322 233456789999999998777666 6789999
Q ss_pred EEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305 229 WDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308 (334)
Q Consensus 229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 308 (334)
||. + +.... +........+..++++++|+++++...++.|.+||. ++.. .......+...+.+++
T Consensus 167 ~~~-~-g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-----------~~~~~~~~~~~~~~i~ 231 (299)
T 2z2n_A 167 ITE-S-GDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-----------TEFKIPTPNARPHAIT 231 (299)
T ss_dssp ECT-T-CCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-----------EEEECSSTTCCEEEEE
T ss_pred EcC-C-CcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-----------EEEECCCCCCCceeEE
Confidence 998 4 44322 211112345678899999997777666889999998 5421 1112233445688999
Q ss_pred eccCCCcccceeeEEeeecceee
Q psy2305 309 WKHHKFERDLLVADATCSGQITN 331 (334)
Q Consensus 309 ~~~s~~~~~~~~~l~t~~~d~~i 331 (334)
+ ++++ +++++...++.|
T Consensus 232 ~--~~~g----~l~v~~~~~~~i 248 (299)
T 2z2n_A 232 A--GAGI----DLWFTEWGANKI 248 (299)
T ss_dssp E--CSTT----CEEEEETTTTEE
T ss_pred E--CCCC----CEEEeccCCceE
Confidence 9 9999 876665444444
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.66 E-value=3.9e-13 Score=114.78 Aligned_cols=244 Identities=9% Similarity=0.024 Sum_probs=156.6
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+....|+|+|+|+++++...++.|++||..++... .+... .. .|. ++++++++.|+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------~~~~~-~~-------~~~-ia~~~~g~~l~ 186 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------TVHPG-FK-------GGK-PAVTKDKQRVY 186 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------EEEET-CC-------BCB-CEECTTSSEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------Eeecc-CC-------CCc-eeEecCCCcEE
Confidence 45789999999997777777899999999887654 12111 11 123 55688999888
Q ss_pred EeeCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 82 CSSMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 82 ~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
++..++ .|.+++...+.....+..... .....+.+++++|++..|+.+. ++.|..||... +...........+..
T Consensus 187 ~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~-~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 187 SIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT-QEVTLIKQLELSGSL 264 (409)
T ss_dssp EEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT-CCEEEEEECCCCSCC
T ss_pred EEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC-CCEEEEecccccCCC
Confidence 887765 788888766554333310000 0011678999999555555555 78999999885 222111000012222
Q ss_pred cce--EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC---------------CCeEEEEEccCCcEEEeeec
Q psy2305 159 NIV--SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN---------------GGITHLEFSSNGILLFSGAR 221 (334)
Q Consensus 159 ~~v--~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~~ 221 (334)
..- ..++|+|++..++++-..++.|+.|+... + +..+.++. .....++++|+|+ |+.+..
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~ 341 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG 341 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence 222 39999996442666667788999999753 3 33333322 3478999999998 555553
Q ss_pred -CCCeEEEEEccCCCccceeecccc-------------cCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305 222 -KDCEIICWDLRNPGCILHTFPRQV-------------STNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276 (334)
Q Consensus 222 -~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 276 (334)
.++.|+.|++.. +. +..+.++. .-.....++++++|.++++-..+++|+.+++
T Consensus 342 ~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 478999999754 44 33333220 0134678999999988888888888888765
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.65 E-value=1.2e-13 Score=113.50 Aligned_cols=222 Identities=10% Similarity=0.048 Sum_probs=146.8
Q ss_pred cCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305 74 DGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN 151 (334)
Q Consensus 74 s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~ 151 (334)
+|+++ ++++...++.|..|+. +++. ..+..... .+..++++++|+++++.. ++.|..|+.+ +.......
T Consensus 53 ~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~-----~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~~~~~~ 123 (305)
T 3dr2_A 53 WEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATA-----FTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQAHLLVG 123 (305)
T ss_dssp EGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCS-----CEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEC
T ss_pred eCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCC-----ccceeeECCCCCEEEEECCCCEEEEECCC--CCEEEEEe
Confidence 67888 5667777889999997 4543 33332222 678999999999777665 6789999975 43222100
Q ss_pred ccccc-cccceEEEEEcCCCCcEEEE----eec-------------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305 152 LKPWF-RKNIVSAIAINPVHPDICAL----GTY-------------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG 213 (334)
Q Consensus 152 ~~~~~-~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 213 (334)
...+ ....+..++++|+|+ +.++ |.. .+.|..||..+++..... .......++|+|++
T Consensus 124 -~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg 199 (305)
T 3dr2_A 124 -RYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDE 199 (305)
T ss_dssp -EETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTS
T ss_pred -ccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCC
Confidence 1111 123567899999998 7775 332 256888887777654433 34456889999999
Q ss_pred cEEEeeecCC------CeEEEEEccCCCccc--eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCC
Q psy2305 214 ILLFSGARKD------CEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285 (334)
Q Consensus 214 ~~l~~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 285 (334)
+.|+++. .. +.|.+|++...+ .. ..+.. ........++++++|++.++. .+ .|.+|+...
T Consensus 200 ~~lyv~~-~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g------- 267 (305)
T 3dr2_A 200 QTLYVSQ-TPEQGHGSVEITAFAWRDGA-LHDRRHFAS-VPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDG------- 267 (305)
T ss_dssp SEEEEEE-CCC---CCCEEEEEEEETTE-EEEEEEEEC-CSSSCCCSEEECTTSCEEECC-SS-EEEEECTTS-------
T ss_pred CEEEEEe-cCCcCCCCCEEEEEEecCCC-ccCCeEEEE-CCCCCCCeEEECCCCCEEEec-CC-cEEEECCCC-------
Confidence 9888876 44 789999987522 11 11111 012223357789999955544 44 499999854
Q ss_pred CccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
+.+..+..+. .+.+++| +|++ +.|..++.++.+++
T Consensus 268 ------~~~~~~~~~~-~~~~~~f--~~d~----~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 ------QLLGHIPTPG-TASNCTF--DQAQ----QRLFITGGPCLWML 302 (305)
T ss_dssp ------CEEEEEECSS-CCCEEEE--CTTS----CEEEEEETTEEEEE
T ss_pred ------CEEEEEECCC-ceeEEEE--eCCC----CEEEEEcCCeEEEE
Confidence 4555555444 5899999 9998 88888888887664
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.62 E-value=1.3e-12 Score=108.40 Aligned_cols=219 Identities=11% Similarity=-0.016 Sum_probs=141.9
Q ss_pred ecCC-CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeec
Q psy2305 73 IDGF-TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRN 151 (334)
Q Consensus 73 ~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~ 151 (334)
|+|+ +.++++...++.|..||..+++.. .+.. .. .+.+++|+++|+++++. +..|.+||..+ +......
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~-----~v~~i~~~~dg~l~v~~-~~gl~~~d~~~-g~~~~~~- 125 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKT-VHAL-PF-----MGSALAKISDSKQLIAS-DDGLFLRDTAT-GVLTLHA- 125 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SS-----CEEEEEEEETTEEEEEE-TTEEEEEETTT-CCEEEEE-
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CC-----cceEEEEeCCCeEEEEE-CCCEEEEECCC-CcEEEEe-
Confidence 3666 455666667889999999877653 2322 11 68899999999877765 44599999875 3332210
Q ss_pred cccc--ccccceEEEEEcCCCCcEEEEeec------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC
Q psy2305 152 LKPW--FRKNIVSAIAINPVHPDICALGTY------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD 223 (334)
Q Consensus 152 ~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 223 (334)
... .....+.+++++|+|+ ++++... .+.|..++ +++. ..+..+......++|+|+++.|+.+...+
T Consensus 126 -~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 126 -ELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp -CSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred -eCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 111 1124688999999998 6554432 25666666 4443 33333334567899999998776665257
Q ss_pred CeEEEEEcc--CCC-ccc--eeecc-cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305 224 CEIICWDLR--NPG-CIL--HTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF 297 (334)
Q Consensus 224 ~~i~iwd~~--~~~-~~~--~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 297 (334)
+.|.+||+. + + ... ..+.. .........+.++++|.+.++...++.|.+|+.. + +.+..+
T Consensus 201 ~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g------------~~~~~i 266 (326)
T 2ghs_A 201 NRLMRVPLDART-GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G------------NHIARY 266 (326)
T ss_dssp CEEEEEEBCTTT-CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C------------CEEEEE
T ss_pred CEEEEEEccccc-CCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C------------CEEEEE
Confidence 899999986 3 3 211 11211 1112345678899999887777667889999984 4 455556
Q ss_pred cccccccceeeeccC-CCcccceeeEEeee
Q psy2305 298 SAHQDCTNGVRWKHH-KFERDLLVADATCS 326 (334)
Q Consensus 298 ~~~~~~i~~~~~~~s-~~~~~~~~~l~t~~ 326 (334)
..+...+.+++| + |++ +.|+.++
T Consensus 267 ~~~~~~~~~~af--~g~d~----~~L~vt~ 290 (326)
T 2ghs_A 267 EVPGKQTTCPAF--IGPDA----SRLLVTS 290 (326)
T ss_dssp ECSCSBEEEEEE--ESTTS----CEEEEEE
T ss_pred ECCCCCcEEEEE--ecCCC----CEEEEEe
Confidence 555667899999 8 887 6554443
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.62 E-value=3.2e-12 Score=105.98 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=145.1
Q ss_pred eeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 4 EEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 4 V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
..+.+|+|++ .++++...++.|.+|+..+++.. .+. ....+.++.| +++++++++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------------~~~--~~~~v~~i~~-------~~dg~l~v~ 106 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT---------------VHA--LPFMGSALAK-------ISDSKQLIA 106 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---------------EEE--CSSCEEEEEE-------EETTEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---------------EEE--CCCcceEEEE-------eCCCeEEEE
Confidence 3578999974 45566667889999999877543 121 2345666666 678887775
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcCCCCCeeeeeccccccc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
. .+ .|.+||..+++.......... .....+..++++|+|+++++.. + +...+|.++. ++... +...
T Consensus 107 ~-~~-gl~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~-----~~~~ 177 (326)
T 2ghs_A 107 S-DD-GLFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVTK-----LFAD 177 (326)
T ss_dssp E-TT-EEEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEEE-----EEEE
T ss_pred E-CC-CEEEEECCCCcEEEEeeCCCC-CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-CcEEE-----eeCC
Confidence 4 44 499999988876443322111 1112688999999999776543 2 2344444442 43221 2223
Q ss_pred ccceEEEEEcCCCCcEEE-EeecCCeEEEEECC--CC-Cc-----eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305 158 KNIVSAIAINPVHPDICA-LGTYSKIIGLFSDS--DG-RP-----LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIIC 228 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 228 (334)
......++|+|+++ .++ +.+.++.|.+||+. ++ +. ...+.........++++++|++.++.. .++.|.+
T Consensus 178 ~~~~~~i~~s~dg~-~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~ 255 (326)
T 2ghs_A 178 ISIPNSICFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDR 255 (326)
T ss_dssp ESSEEEEEECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEE
T ss_pred CcccCCeEEcCCCC-EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEE
Confidence 34567899999998 554 44567899999986 55 32 222333345678899999998777766 6789999
Q ss_pred EEccCCCccceeecccccCCceEEEEec-CCCceEEeeec
Q psy2305 229 WDLRNPGCILHTFPRQVSTNQRVYFDLT-SCSNYLLSGNT 267 (334)
Q Consensus 229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~ 267 (334)
||.. ++.+..+... ...+.+++|+ |+++.|++++.
T Consensus 256 ~d~~--g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 256 YDTD--GNHIARYEVP--GKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECTT--CCEEEEEECS--CSBEEEEEEESTTSCEEEEEEB
T ss_pred ECCC--CCEEEEEECC--CCCcEEEEEecCCCCEEEEEec
Confidence 9984 5555555433 3457889998 88877655543
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.62 E-value=2.7e-13 Score=112.92 Aligned_cols=272 Identities=14% Similarity=0.034 Sum_probs=171.9
Q ss_pred EEEcCCCcEEEEeeC-----CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 7 VDEAPDGTCLLTNSN-----DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 7 ~~~sp~~~~l~~~~~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
....|+++.+++... ++.|.++|..+++.. ..+..+.. |. ++++|||++++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--------------~~I~vG~~---------P~-va~spDG~~ly 93 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--------------GMIDGGFL---------PN-PVVADDGSFIA 93 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--------------EEEEECSS---------CE-EEECTTSSCEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE--------------EEEECCCC---------Cc-EEECCCCCEEE
Confidence 445789998887764 679999999998876 33433221 22 45588999887
Q ss_pred Eee----------CCCcEEEEeCCCCeeeEEEcCcccc--ccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCe
Q psy2305 82 CSS----------MYAPIHLWDSVGGEIKATYRPYNQV--DEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRE 146 (334)
Q Consensus 82 ~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~ 146 (334)
+++ .++.|.+||..+++.+..+...... ........++|+|||++|+++. ++.|.++|+.+ .+.
T Consensus 94 Van~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~~v 172 (386)
T 3sjl_D 94 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAF 172 (386)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEE
T ss_pred EEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-CcE
Confidence 775 3678999999999988887542100 0001356899999999988764 58999999997 555
Q ss_pred eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceEeeccC----CCCeE-EEEEc-cCCcEEEee
Q psy2305 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLFFLKGH----NGGIT-HLEFS-SNGILLFSG 219 (334)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~ 219 (334)
...+++ .+ +....|.+...+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .
T Consensus 173 v~tI~v--~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-v 243 (386)
T 3sjl_D 173 KRMLDV--PD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-P 243 (386)
T ss_dssp EEEEEC--CS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-E
T ss_pred EEEEEC--CC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-E
Confidence 553221 11 1122344433677778888888888876 5543221111 12221 24564 6786665 4
Q ss_pred ecCCCeEEEEEccCCC-ccceeec--------ccccCCceEEEEecCCCceEEeeec----------CCcEEEEeCCCCC
Q psy2305 220 ARKDCEIICWDLRNPG-CILHTFP--------RQVSTNQRVYFDLTSCSNYLLSGNT----------NGDLSIWNVNTSN 280 (334)
Q Consensus 220 ~~~d~~i~iwd~~~~~-~~~~~~~--------~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~ 280 (334)
+ .+|.+++.|+.... .....+. ..........++++++++.++.... .+.|.++|+.+.
T Consensus 244 s-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~- 321 (386)
T 3sjl_D 244 T-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG- 321 (386)
T ss_dssp B-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-
T ss_pred e-CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC-
Confidence 5 58999999997522 1222221 0000111123566899988877643 247999999998
Q ss_pred CCCCCCccccccccceecccccccceeeeccCCCccccee-eEEee-ecceeee
Q psy2305 281 LPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATC-SGQITNV 332 (334)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~-~~d~~i~ 332 (334)
+.+..+.. ...+.++++ +||+ + +|+++ ..++.+.
T Consensus 322 -----------kv~~~i~v-g~~~~~lav--s~D~----~~~ly~tn~~~~~Vs 357 (386)
T 3sjl_D 322 -----------ERLAKFEM-GHEIDSINV--SQDE----KPLLYALSTGDKTLY 357 (386)
T ss_dssp -----------CEEEEEEE-EEEECEEEE--CSSS----SCEEEEEETTTTEEE
T ss_pred -----------eEEEEEEC-CCCcceEEE--CCCC----CeEEEEEcCCCCeEE
Confidence 56666653 236889999 9998 6 66654 4466654
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=2.6e-12 Score=104.96 Aligned_cols=227 Identities=12% Similarity=0.019 Sum_probs=153.3
Q ss_pred ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS 149 (334)
Q Consensus 71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 149 (334)
++++++++++++...++.|.+||.. ++... +...... ..+..+++.++++++++.. ++.|..||.. ++....
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~~~~ 97 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPD---AKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGFTEY 97 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTT---CCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEE
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCC---CcceeEEECCCCCEEEEecCCCeEEEECCC--CCeEEe
Confidence 4447899888877778899999987 55443 3221111 2688999999998777765 7889999977 333221
Q ss_pred ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE-eeccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305 150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIIC 228 (334)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 228 (334)
........+.++++.+++. ++++...++.|..+|.. ++... .+......+..+++.++|+.+++.. .++.|..
T Consensus 98 ---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~ 171 (300)
T 2qc5_A 98 ---PLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTEN-QNNSIGR 171 (300)
T ss_dssp ---ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEE
T ss_pred ---cCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEec-CCCeEEE
Confidence 2222346788999999998 77766668899999987 55432 2333456789999999999666555 5788999
Q ss_pred EEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305 229 WDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308 (334)
Q Consensus 229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 308 (334)
+|.. +... .+........+..++++++|+++++....+.|.+|+. ++. .....+..+...+.+++
T Consensus 172 ~~~~--g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-----------~~~~~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 172 ITNT--GKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE-----------ISEYDIPTPNARPHAIT 236 (300)
T ss_dssp ECTT--CCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----------EEEEECSSTTCCEEEEE
T ss_pred ECCC--CcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-----------EEEEECCCCCCCceEEE
Confidence 9883 4332 2322222345778889999987777666778999998 431 11112223345678899
Q ss_pred eccCCCcccceeeEEeeecceee
Q psy2305 309 WKHHKFERDLLVADATCSGQITN 331 (334)
Q Consensus 309 ~~~s~~~~~~~~~l~t~~~d~~i 331 (334)
+ ++++ ++.++...++.|
T Consensus 237 ~--d~~g----~l~v~~~~~~~i 253 (300)
T 2qc5_A 237 A--GKNS----EIWFTEWGANQI 253 (300)
T ss_dssp E--CSTT----CEEEEETTTTEE
T ss_pred E--CCCC----CEEEeccCCCeE
Confidence 9 9999 766666554444
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=4.3e-14 Score=118.20 Aligned_cols=176 Identities=11% Similarity=-0.018 Sum_probs=131.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCC-------eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEE
Q psy2305 114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGR-------ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLF 186 (334)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 186 (334)
.+..+++++...++++|+...+.+|++....+ ... +.....+.. |+.++| ++. +|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~--~~~~~~lp~-V~~l~f--d~~-~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLT--FKWEKEIPD-VIFVCF--HGD-QVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCC--CSEEEECTT-EEEEEE--ETT-EEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhcccccccc--ceEEeeCCC-eeEEEE--CCC-EEEEE-cCCcEEEE
Confidence 68899999999999999866778898763110 011 001233556 999999 887 88888 88999999
Q ss_pred ECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee
Q psy2305 187 SDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN 266 (334)
Q Consensus 187 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 266 (334)
|+++.........|...+.++.+.+.. +++++ .||.+.+||+.. +.... ....+.+++|||+| ++.|.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~-~dG~L~v~dl~~-~~~~~------~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILN-SVNDLSALDLRT-KSTKQ------LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEE-TTSEEEEEETTT-CCEEE------EEESEEEEEECSSE--EEEEE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEE-CCCCEEEEEccC-Ccccc------ccCCceEEEEcCCc--eEEEE
Confidence 998877666677788889888877653 77888 899999999986 44322 13468899999999 67788
Q ss_pred cCCcEEEEeCCCCCCCCCCCcccccccccee------c---ccccccceeeeccCCCcccceeeEEe
Q psy2305 267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKF------S---AHQDCTNGVRWKHHKFERDLLVADAT 324 (334)
Q Consensus 267 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~i~~~~~~~s~~~~~~~~~l~t 324 (334)
.||++++|+...... .....+ . +|...|.++.| .+++ .+|++
T Consensus 180 ~dg~i~~~~~~~~~~----------~~k~~I~~Pp~~~~~~~~~~~V~sI~w--l~~~----~flv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEM----------EKQFEFSLPSELEELPVEEYSPLSVTI--LSPQ----DFLAV 230 (388)
T ss_dssp TTSCEEEEEEETTEE----------EEEEEECCCHHHHTSCTTTSEEEEEEE--SSSS----EEEEE
T ss_pred cCCcEEEEcCCCccc----------cccceecCCcccccccCCCeeEEEEEE--ecCC----eEEEE
Confidence 999999998877521 002223 2 36678999999 9999 88876
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.60 E-value=3.8e-13 Score=114.06 Aligned_cols=269 Identities=13% Similarity=0.002 Sum_probs=172.6
Q ss_pred CCCcEEEEeeCC-----CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee-
Q psy2305 11 PDGTCLLTNSND-----NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS- 84 (334)
Q Consensus 11 p~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~- 84 (334)
|+++++++.... +.|.++|..+.+.. ..+..+. .| .++++||+++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv--------------~~I~vG~---------~P-gia~SpDgk~lyVan~ 137 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL--------------GMTDGGF---------LP-HPVAAEDGSFFAQAST 137 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE--------------EEEEECS---------SC-EEEECTTSSCEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE--------------EEEECCC---------CC-ceEECCCCCEEEEEec
Confidence 467767666542 69999999998876 3333322 23 455689999888876
Q ss_pred ---------CCCcEEEEeCCCCeeeEEEcCc--cccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeee
Q psy2305 85 ---------MYAPIHLWDSVGGEIKATYRPY--NQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSR 150 (334)
Q Consensus 85 ---------~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~ 150 (334)
.++.|.++|..+++.+..+... ...........+.|+|||++|+++. ++.|.+.|+.+ .+....+
T Consensus 138 ~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I 216 (426)
T 3c75_H 138 VFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRML 216 (426)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEE
Confidence 3678999999999988877542 1000001356889999999999764 47899999997 5554432
Q ss_pred cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe----eccCCCCe-EEEEEccCCcEEEeeecCCCe
Q psy2305 151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF----LKGHNGGI-THLEFSSNGILLFSGARKDCE 225 (334)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~~~~~~d~~ 225 (334)
++ .+ +....|++...+++.+.||.+.+.+..+++.... +.....++ ..+.|.+++..++..+ ..+.
T Consensus 217 ~v--~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~ 287 (426)
T 3c75_H 217 DV--PD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGK 287 (426)
T ss_dssp EC--CS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSE
T ss_pred Ec--CC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCc
Confidence 21 11 1234455543666677788888888855554422 21111121 2356799998888878 7899
Q ss_pred EEEEEccCCCc-cceeecc---c-----ccCCceEEEEecCCCceEEeeec----------CCcEEEEeCCCCCCCCCCC
Q psy2305 226 IICWDLRNPGC-ILHTFPR---Q-----VSTNQRVYFDLTSCSNYLLSGNT----------NGDLSIWNVNTSNLPSSPY 286 (334)
Q Consensus 226 i~iwd~~~~~~-~~~~~~~---~-----~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~ 286 (334)
+.+.|...... ....+.. . ........++++|+++.+++... ++.|.++|+.+.
T Consensus 288 V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~------- 360 (426)
T 3c75_H 288 IFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG------- 360 (426)
T ss_dssp EEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-------
T ss_pred EEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC-------
Confidence 99999864211 1111110 0 00111112578999887776642 357999999998
Q ss_pred ccccccccceecccccccceeeeccCCCccccee-eEEeee-cceeee
Q psy2305 287 EESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATCS-GQITNV 332 (334)
Q Consensus 287 ~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~~-~d~~i~ 332 (334)
+.+..+... .....+.| +||+ + +|+++. .++.|.
T Consensus 361 -----kvv~~I~vg-~~P~gia~--spDg----~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 361 -----ERINKIELG-HEIDSINV--SQDA----EPLLYALSAGTQTLH 396 (426)
T ss_dssp -----CEEEEEEEE-EEECEEEE--CCSS----SCEEEEEETTTTEEE
T ss_pred -----eEEEEEECC-CCcCeEEE--ccCC----CEEEEEEcCCCCeEE
Confidence 666666532 35789999 9999 8 888877 466664
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.58 E-value=5.6e-13 Score=113.03 Aligned_cols=244 Identities=10% Similarity=0.066 Sum_probs=154.4
Q ss_pred EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
.++++|||++|+++. .++.|.++|..+.+... .+........ ..--.|..+.++|
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~--------------~I~v~g~~r~-~~g~~P~~~~~sp 186 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA--------------DIELPDAPRF-LVGTYQWMNALTP 186 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE--------------EEEETTCCCC-CBSCCGGGSEECT
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE--------------EEECCCcccc-ccCCCcceEEEcC
Confidence 789999999888875 36789999999988762 2221100000 0001356788899
Q ss_pred CCcEEEEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305 76 FTSYFLCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRN 151 (334)
Q Consensus 76 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~ 151 (334)
||++++++.. ++.|.+.|+.+++.+..+.... +....|++ +.+++.+ ||.+.+.+... ++......
T Consensus 187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---------~~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~ 256 (426)
T 3c75_H 187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---------CYHIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNT 256 (426)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---------EEEEEEEETTEEEEEETTSSEEEEECCT-TCCEEEEC
T ss_pred CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---------ceeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee
Confidence 9999998864 5789999999999988876522 12233333 2223323 66666666632 33221100
Q ss_pred ccccccccc-eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce--Eeecc----------CCCCeEEEEEccCCcEEEe
Q psy2305 152 LKPWFRKNI-VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL--FFLKG----------HNGGITHLEFSSNGILLFS 218 (334)
Q Consensus 152 ~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~l~~ 218 (334)
..+.....+ ...+.+.+++. .++.....+.+.+.|+...... ..+.- .......++++|+++.+++
T Consensus 257 ~~~~v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 257 EVFHTEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCSCTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeccCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 001111111 12356789988 6666667899999998654321 11110 0112223789999988877
Q ss_pred eec---------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeee-cCCcEEEEeCCCC
Q psy2305 219 GAR---------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGN-TNGDLSIWNVNTS 279 (334)
Q Consensus 219 ~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~ 279 (334)
... .++.|.+.|..+ .+.+.++.. ......+.|+|||+ ++++.. .++.|.++|+.+.
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAET-GERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EecccccccccCCCCEEEEEECCC-CeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 641 135799999998 676777653 22466789999999 888877 5899999999998
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.58 E-value=8e-14 Score=116.57 Aligned_cols=182 Identities=9% Similarity=-0.006 Sum_probs=126.1
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.++.+++++...++++|+.++ +.+|++...+... ...... ........... |+.++| ++++|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~--~~~~~~---~~~~~~~~lp~-V~~l~f---------d~~~L~v 102 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI--TSDSTP---LTFKWEKEIPD-VIFVCF---------HGDQVLV 102 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH--HSSSCC---CCCSEEEECTT-EEEEEE---------ETTEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhh--cccccc---ccceEEeeCCC-eeEEEE---------CCCEEEE
Confidence 578899999999999999875 7779976443100 000000 11112222334 766655 7888998
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWFRKNIV 161 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 161 (334)
+ .++.|++||+.+.........+.. ++.++.+.+.. ++++ .||.+.+||+.. +.... +...|
T Consensus 103 ~-~~~~l~v~dv~sl~~~~~~~~~~~-----~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~--------~~~~V 165 (388)
T 1xip_A 103 S-TRNALYSLDLEELSEFRTVTSFEK-----PVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ--------LAQNV 165 (388)
T ss_dssp E-ESSEEEEEESSSTTCEEEEEECSS-----CEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE--------EEESE
T ss_pred E-cCCcEEEEEchhhhccCccceeec-----ceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc--------ccCCc
Confidence 8 789999999876654444443332 67777777653 5555 499999999985 33221 34689
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEee------c---cCCCCeEEEEEccCCcEEEeee
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFL------K---GHNGGITHLEFSSNGILLFSGA 220 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~~~ 220 (334)
+|++|+|+| ++.|..||++++|+...++. ..++ . +|...|.++.|.+++.++++-.
T Consensus 166 s~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 166 TSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred eEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999998 45688899999999876664 4455 2 3678899999999999888743
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.55 E-value=4.1e-12 Score=104.33 Aligned_cols=230 Identities=13% Similarity=0.076 Sum_probs=145.0
Q ss_pred ceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 3 IEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 3 ~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
......|+|+|+ ++++...++.|..|+.. ++.. .+.. ....+..+.+ +++|++++
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---------------~~~~-~~~~~~gl~~-------d~dG~l~v 101 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---------------VLLD-ATAFTNGNAV-------DAQQRLVH 101 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---------------EEEE-SCSCEEEEEE-------CTTSCEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---------------EEeC-CCCccceeeE-------CCCCCEEE
Confidence 356789999998 55666678999999874 4332 2222 2344555555 78999777
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEE----ee--------------CCcEEEEEcCCC
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA----GF--------------LSEVKIFSTDRP 143 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~--------------d~~i~i~d~~~~ 143 (334)
+...++.|.+|+.. ++.......... .....+..+++.|+|+++++ |. .+.|..+|..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~- 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG- 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-
Confidence 66666789999975 554332221111 11115678999999998886 32 14566666643
Q ss_pred CCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCce--Eee-ccCCCCeEEEEEccCCc
Q psy2305 144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRPL--FFL-KGHNGGITHLEFSSNGI 214 (334)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~-~~~~~~i~~~~~~~~~~ 214 (334)
++... .. .......++|+|+++ .|+.+... +.|.+|++..+... ..+ ....+....++++++|+
T Consensus 179 g~~~~-----~~-~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 179 SPLQR-----MA-DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp CCCEE-----EE-EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred CcEEE-----Ee-cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence 33222 12 334567899999998 77666554 78999998754311 111 11233456789999998
Q ss_pred EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275 (334)
Q Consensus 215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 275 (334)
|.+++ .++ |.+|+.. ++.+..+... ..+..++|+|+++.|+.++.++ +..++
T Consensus 252 -lwv~~-~~g-v~~~~~~--g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 252 -LWSSS-GTG-VCVFDSD--GQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp -EEECC-SSE-EEEECTT--SCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred -EEEec-CCc-EEEECCC--CCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 44555 354 8899885 5556655543 2466788999998888777654 44333
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=1.3e-12 Score=109.07 Aligned_cols=242 Identities=8% Similarity=0.043 Sum_probs=147.2
Q ss_pred cccceecCCCcEEEEee--CCCcEEEEeCCCCeeeEEEcCc--cccccccceeEEEEcCCCCEEEEee------CCcEEE
Q psy2305 68 PKTSSIDGFTSYFLCSS--MYAPIHLWDSVGGEIKATYRPY--NQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKI 137 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i 137 (334)
|..++++++|+++++.. .++.++||.+.+++. ..+... ........+..++++++++++++.. +..|.+
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 34456688999888863 234245555445543 333211 1111223789999999988666542 478999
Q ss_pred EEcCCCCCeeeeecc--cccccccceEEEEEcCCCCcEEEEee---cCCeEEEEECCCCCceEeeccCC-----------
Q psy2305 138 FSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGT---YSKIIGLFSDSDGRPLFFLKGHN----------- 201 (334)
Q Consensus 138 ~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~----------- 201 (334)
||+.+ ++......+ ....+...+..+++++++...+++.. .++.|.+||+.+++..+.+.+|.
T Consensus 98 ~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 98 WDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 99986 554432211 01122345689999987552445554 67899999998877666554321
Q ss_pred ------------------CCeEEEEEccCCcEEEeeecCCC-eEEEEEccC--CCc-----cceeecccccCCceEEEEe
Q psy2305 202 ------------------GGITHLEFSSNGILLFSGARKDC-EIICWDLRN--PGC-----ILHTFPRQVSTNQRVYFDL 255 (334)
Q Consensus 202 ------------------~~i~~~~~~~~~~~l~~~~~~d~-~i~iwd~~~--~~~-----~~~~~~~~~~~~~~~~~~~ 255 (334)
..+..++|+|+|+.|+++. .++ .+..++... .+. ....+...........+++
T Consensus 177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP-MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE-SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred CCEEEEeccCCCceeceecccceeEeccCCCEEEEEe-CCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 2358899999999998887 454 555555431 010 0000110001123345788
Q ss_pred cCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec-ccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305 256 TSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS-AHQDCTNGVRWKHHKFERDLLVADATCSGQIT 330 (334)
Q Consensus 256 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~ 330 (334)
+++|.++++...++.|.+||..++ +...... .+...+.+++| .+++ .++++.+..+.
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G------------~~~~~~~~~~~~~p~~va~--~~~g----~l~v~~~~~~~ 313 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADR------------AYKLLVTDEKLSWTDSFNF--GSDG----YLYFDCNQLHH 313 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTT------------EEEEEEECGGGSCEEEEEE--CTTS----CEEEEECCGGG
T ss_pred CCCCCEEEEccCCCeEEEEECCCC------------CEEEEEECCceecCCeeEE--CCCC----cEEEEeCcccc
Confidence 999999998888999999998555 2211111 12345789999 9999 88777765543
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.52 E-value=4.1e-12 Score=116.08 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=138.3
Q ss_pred ecCCCcEEEEee-----CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC-------------
Q psy2305 73 IDGFTSYFLCSS-----MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS------------- 133 (334)
Q Consensus 73 ~s~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~------------- 133 (334)
|||||++||.+. ....|++||+.+++.+..... .. ....++|+ ||+.|+.+. +.
T Consensus 136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~-----k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-DV-----KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-EE-----ESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-Cc-----eeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence 488999988542 235799999999986543111 11 13578999 999888665 53
Q ss_pred cEEEEEcCCCCCeeeeecccccc-cccceEEEEEcCCCCcEEEEeec----CCeEEEEECCCCC-ceEeeccCCCCeEEE
Q psy2305 134 EVKIFSTDRPGRECVSRNLKPWF-RKNIVSAIAINPVHPDICALGTY----SKIIGLFSDSDGR-PLFFLKGHNGGITHL 207 (334)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~i~~~ 207 (334)
.|++|++.+....-.... .... +......+.|+|+|+ +|+.... ...|+++|+.++. ....+..+.......
T Consensus 209 ~v~~~~lgt~~~~~~~v~-~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~ 286 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVF-GAIPAQHHRYVGATVTEDDR-FLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286 (693)
T ss_dssp EEEEEETTSCGGGCEEEE-SCSGGGCCSEEEEEECTTSC-EEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE
T ss_pred EEEEEECCCCcccceEEE-ecCCCCCeEEEEEEEcCCCC-EEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE
Confidence 389999886332111100 2233 455678899999999 6644332 2589999997764 455666666665555
Q ss_pred EEccCCcEEEeeecCC---CeEEEEEccCCCc-cceeecccccCCceEEEEecCCCceEEeeec-CC--cEEEEeCCCCC
Q psy2305 208 EFSSNGILLFSGARKD---CEIICWDLRNPGC-ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NG--DLSIWNVNTSN 280 (334)
Q Consensus 208 ~~~~~~~~l~~~~~~d---~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~ 280 (334)
++++|..|+..++.+ +.|..+|+..... ....+..+.. .+. .|++++++|+.... ++ .|++|++..+
T Consensus 287 -~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 287 -VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp -EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred -EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 667776665554233 5788999886321 1234444422 233 78899988876655 43 6889998854
Q ss_pred CCCCCCccccccccceec-ccccccceeeeccCCCcccceeeEEeee
Q psy2305 281 LPSSPYEESVQEPLYKFS-AHQDCTNGVRWKHHKFERDLLVADATCS 326 (334)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~s~~~~~~~~~l~t~~ 326 (334)
....+. ...+.+..+.+ +|++ ..|+...
T Consensus 361 ------------~~~~l~~p~~~~~~~~~~--~~d~----~~l~~~~ 389 (693)
T 3iuj_A 361 ------------RVREVALPGLGSVSGFNG--KHDD----PALYFGF 389 (693)
T ss_dssp ------------EEEEECCSSSSEEEECCC--CTTC----SCEEEEE
T ss_pred ------------eeEEeecCCCceEEeeec--CCCC----CEEEEEe
Confidence 222332 23446777888 8887 6555443
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.52 E-value=3.7e-11 Score=100.90 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=145.3
Q ss_pred CCCcEEEE-eeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeE---EEEEEecccceecCCCcEEEEeeCC
Q psy2305 11 PDGTCLLT-NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGII---YDYVWYPKTSSIDGFTSYFLCSSMY 86 (334)
Q Consensus 11 p~~~~l~~-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~s~~~~~l~~~~~d 86 (334)
+++++|++ +..+++|.++|+.+.... +.+.++++. ..+ .... .|..+..+|+| +++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~----------p~~~k~ie~---~~~~~~~g~s-~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE----------PKIIKVIEP---EEVKKVSGYS-RLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS----------CEEEEEECH---HHHHHHHCEE-EEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC----------ceeeeeech---hhcccccCCC-cccceeECCCe-EEEEcCCC
Confidence 77887765 457889999999754221 001122210 000 0011 13334457899 66665444
Q ss_pred ------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--------------------CCcEEEEEc
Q psy2305 87 ------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--------------------LSEVKIFST 140 (334)
Q Consensus 87 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------d~~i~i~d~ 140 (334)
+.|.++|.++++.+..+....... ..-+.+.|+|+++.++++. +.+|.+||+
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~--~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQ--YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTC--CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCc--cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 689999999999998887432211 1345688999999988773 689999999
Q ss_pred CCCCCeeeeecccccccccceEEEEE--cCCCCcEEEEee------cCCeEEEEECCCCCc--eEe--ecc---------
Q psy2305 141 DRPGRECVSRNLKPWFRKNIVSAIAI--NPVHPDICALGT------YSKIIGLFSDSDGRP--LFF--LKG--------- 199 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~--~~~--------- 199 (334)
.+ ++....+. ..........+.| +|+++ ++.+++ .+++|.+|....++. .+. +..
T Consensus 236 ~~-~k~~~tI~--vg~~g~~P~~i~f~~~Pdg~-~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 236 RK-RKRIHSLT--LGEENRMALELRPLHDPTKL-MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp TT-TEEEEEEE--SCTTEEEEEEEEECSSTTCC-EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred CC-CcEeeEEe--cCCCCCccceeEeeECCCCC-EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence 96 54444321 1111233445656 99999 655555 567887766544321 111 110
Q ss_pred -------CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc--cceeecccc------------cCCceEEEEecCC
Q psy2305 200 -------HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC--ILHTFPRQV------------STNQRVYFDLTSC 258 (334)
Q Consensus 200 -------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~------------~~~~~~~~~~s~~ 258 (334)
-......+.++|||++|+++.+..+.|.+||+...+. .+..+.... .......++++||
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 0234678999999999999998889999999964332 222222110 0012456889999
Q ss_pred CceEEeee
Q psy2305 259 SNYLLSGN 266 (334)
Q Consensus 259 ~~~l~~~~ 266 (334)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999887
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.47 E-value=7.9e-12 Score=104.36 Aligned_cols=252 Identities=10% Similarity=0.016 Sum_probs=148.5
Q ss_pred ceeEEEEcCCCcEEEEee--CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 3 IEEDVDEAPDGTCLLTNS--NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
.+..++++|+|+++++.. .++.++||.+.+++.. .+ +... .. ...+-..+.+++ ++++++++
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~--p~~~-----~~-~~~~~~~p~gv~-------~d~~g~L~ 81 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PF--PPQS-----GN-AIITFDTVLGIK-------SDGNGIVW 81 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ES--CCCC-----SS-CCCCCSCEEEEE-------ECSSSEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cC--CCcc-----cC-cccceeEeeEEE-------EcCCCcEE
Confidence 467899999999888853 2343555555444322 01 0000 00 001223445544 47888876
Q ss_pred EEeeC-----CCcEEEEeCCCCeeeEEEcCccc-cccccceeEEEEcCCCCEEE-Ee----eCCcEEEEEcCCCCCeeee
Q psy2305 81 LCSSM-----YAPIHLWDSVGGEIKATYRPYNQ-VDEVTHAYSLAFSLDGNKIY-AG----FLSEVKIFSTDRPGRECVS 149 (334)
Q Consensus 81 ~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~-~~----~d~~i~i~d~~~~~~~~~~ 149 (334)
++-.. ++.|.+||+.+++.+..+..... ......+..+++++++..++ +. .++.|.+||+.+ ++....
T Consensus 82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~ 160 (343)
T 2qe8_A 82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARV 160 (343)
T ss_dssp EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEE
T ss_pred EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEE
Confidence 65433 57899999999987776654211 11112568999998755554 32 357899999875 433321
Q ss_pred ecc-----------cccc--------------cccceEEEEEcCCCCcEEEEeecCC-eEEEEECC---CCC-----ceE
Q psy2305 150 RNL-----------KPWF--------------RKNIVSAIAINPVHPDICALGTYSK-IIGLFSDS---DGR-----PLF 195 (334)
Q Consensus 150 ~~~-----------~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~---~~~-----~~~ 195 (334)
... ...+ ....+..++|+|+++ .|+.+...+ .+..++.. .+. ...
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 100 0000 012368899999998 777766554 66666542 111 000
Q ss_pred --eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305 196 --FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI 273 (334)
Q Consensus 196 --~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 273 (334)
...++.+....++++++|.++++.. .++.|.+||... ++. ..+...........++|.++++++++.+..+.+.+
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~-G~~-~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSAD-RAY-KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAP 316 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTT-TEE-EEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCC-CCE-EEEEECCceecCCeeEECCCCcEEEEeCccccccc
Confidence 1113344556799999998888877 789999999843 442 22222212345778999999988887765555544
Q ss_pred Ee
Q psy2305 274 WN 275 (334)
Q Consensus 274 wd 275 (334)
|.
T Consensus 317 f~ 318 (343)
T 2qe8_A 317 LN 318 (343)
T ss_dssp GB
T ss_pred cc
Confidence 44
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.47 E-value=3.7e-12 Score=106.23 Aligned_cols=253 Identities=7% Similarity=-0.076 Sum_probs=153.8
Q ss_pred EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
.+.++|||++++++. .++.|.+||..+.+... .+..+...... .--.|..++++|
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~--------------~I~v~~~~~~~-~g~~P~~ia~Sp 133 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA--------------DIELPDAPRFS-VGPRVHIIGNCA 133 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE--------------EEEETTSCSCC-BSCCTTSEEECT
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE--------------EEECCCccccc-cCCCcceEEEcC
Confidence 689999999998886 36899999999998762 33221000000 001356778899
Q ss_pred CCcEEEEeeC--CCcEEE--EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCC----CCC
Q psy2305 76 FTSYFLCSSM--YAPIHL--WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDR----PGR 145 (334)
Q Consensus 76 ~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~----~~~ 145 (334)
||++++++.. +..+.+ +|+.+ +..+.... . ..+.|+++..+ +.+ |+.+.+.|+.. .++
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~------~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS------C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS------C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC------c---eEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 9999998864 356888 89876 44443211 1 22345554333 233 78888888764 122
Q ss_pred eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEeecc-------C---CCCeEEEEEccCC
Q psy2305 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFFLKG-------H---NGGITHLEFSSNG 213 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-------~---~~~i~~~~~~~~~ 213 (334)
..........-...+. . .+++. .++..+. +.+.+.|..... .+..+.- + ......++++|++
T Consensus 202 v~~~~t~~i~vg~~P~---~-~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAA---Q-ANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp CCCCSCTTSCBCSCCE---E-ETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred EEEEeeeeeeCCCCcc---c-cccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 1110000111122333 3 56666 5555556 999999986532 2222210 0 1111226899999
Q ss_pred cEEEeeecC-C--------CeEEEEEccCCCccceeecccccCCceEEEEecCCCce-EEeee-cCCcEEEEeCCCCCCC
Q psy2305 214 ILLFSGARK-D--------CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNY-LLSGN-TNGDLSIWNVNTSNLP 282 (334)
Q Consensus 214 ~~l~~~~~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~-~dg~i~iwd~~~~~~~ 282 (334)
+.++++. . . +.+.++|+.+ .+.+..+... .....+.|+|||++ +++.. .++.|.++|+.+.
T Consensus 276 ~~lyV~~-~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~--- 347 (368)
T 1mda_H 276 DGIMILT-VEHSRSCLAAAENTSSVTASV-GQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD--- 347 (368)
T ss_dssp TEEEEEE-EECSSCTTSCEEEEEEEESSS-CCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC---
T ss_pred CEEEEEe-ccccCcccccCCCEEEEECCC-CeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC---
Confidence 9888765 3 2 3566999998 6666666532 24667899999985 45555 4899999999998
Q ss_pred CCCCccccccccceecccccccceeee
Q psy2305 283 SSPYEESVQEPLYKFSAHQDCTNGVRW 309 (334)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~i~~~~~ 309 (334)
+.+..+.... ....+++
T Consensus 348 ---------kvv~~I~vg~-~P~~i~~ 364 (368)
T 1mda_H 348 ---------QDQSSVELDK-GPESLSV 364 (368)
T ss_dssp ---------EEEEECCCCS-CCCEEEC
T ss_pred ---------cEEEEEECCC-CCCEEEe
Confidence 6666666443 3456666
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.46 E-value=2e-10 Score=96.48 Aligned_cols=231 Identities=9% Similarity=0.021 Sum_probs=148.2
Q ss_pred CCCcEEEE-eeCCCcEEEEeCCCC----eeeEEEcCcccc--ccccceeEEEEcCCCCEEEEee-C------CcEEEEEc
Q psy2305 75 GFTSYFLC-SSMYAPIHLWDSVGG----EIKATYRPYNQV--DEVTHAYSLAFSLDGNKIYAGF-L------SEVKIFST 140 (334)
Q Consensus 75 ~~~~~l~~-~~~d~~i~iwd~~~~----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-d------~~i~i~d~ 140 (334)
+++++|++ +..++.|.++|+.+. +..+.++...-. ........+..+|+| .++++. + +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777655 567889999999765 666666311100 000145678889999 666543 3 78999999
Q ss_pred CCCCCeeeeecccccccc-cceEEEEEcCCCCcEEEEee-------------------cCCeEEEEECCCCCceEeeccC
Q psy2305 141 DRPGRECVSRNLKPWFRK-NIVSAIAINPVHPDICALGT-------------------YSKIIGLFSDSDGRPLFFLKGH 200 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~ 200 (334)
.+ .+.....+ ..... ..-..+-|+|+++ .+++.. .+.+|.+||+.+++.+.++...
T Consensus 172 ~T-~~v~~~~~--~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 172 YS-FEPLGKWE--IDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp TT-CCEEEECC--SBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred CC-CeEEEEEc--cCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 86 55554321 11111 2234688899999 888774 3689999999988878777642
Q ss_pred -C-CCeEEEEE--ccCCcEEEeeec-----CCCeEEEEEccCCCcc--ceee--ccc-----c---------cCCceEEE
Q psy2305 201 -N-GGITHLEF--SSNGILLFSGAR-----KDCEIICWDLRNPGCI--LHTF--PRQ-----V---------STNQRVYF 253 (334)
Q Consensus 201 -~-~~i~~~~~--~~~~~~l~~~~~-----~d~~i~iwd~~~~~~~--~~~~--~~~-----~---------~~~~~~~~ 253 (334)
. .....+.| +|+++++++++. .+++|.+|.... +.. ...+ ... . .......+
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 1 23445655 999999999885 567888776653 321 1111 100 0 01335568
Q ss_pred EecCCCceEEeeec-CCcEEEEeCCCCCCCCCCCccccccccceeccc--------------ccccceeeeccCCCcccc
Q psy2305 254 DLTSCSNYLLSGNT-NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH--------------QDCTNGVRWKHHKFERDL 318 (334)
Q Consensus 254 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~~~s~~~~~~ 318 (334)
.+||||++|.++.. .+.|.+||+...... +.+..+... .+....+.+ +|||
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~---------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l--SpDG--- 392 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKP---------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI--SRDG--- 392 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSC---------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE--CTTS---
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCc---------EEEEEEEeCCeeccccccccccCCCCCCEEEE--cCCC---
Confidence 89999999987765 689999998643211 333333221 013588999 9999
Q ss_pred eeeEEeee
Q psy2305 319 LVADATCS 326 (334)
Q Consensus 319 ~~~l~t~~ 326 (334)
++|+++.
T Consensus 393 -k~LyVaN 399 (462)
T 2ece_A 393 -RRVYVTN 399 (462)
T ss_dssp -SEEEEEC
T ss_pred -CEEEEEc
Confidence 8887776
No 226
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.44 E-value=3.9e-09 Score=84.68 Aligned_cols=254 Identities=14% Similarity=0.053 Sum_probs=149.3
Q ss_pred CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-EeeCCCcEEE
Q psy2305 13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL-CSSMYAPIHL 91 (334)
Q Consensus 13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~i 91 (334)
|.+|+.+.. +.|+.++++...... ......+.. ...... .++++++++.|. +-...+.|..
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~---------~~~~~~~~~-~~~~~~-------gi~~d~~~~~ly~~d~~~~~I~~ 62 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKK---------TEAKAFLHI-PAKVII-------GLAFDCVDKVVYWTDISEPSIGR 62 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCG---------GGCEEEEEE-EEEEEE-------EEEEETTTTEEEEEETTTTEEEE
T ss_pred CcEEEEEcC-CeEEEEEecCccccc---------ccceeeecC-CCCcEE-------EEEEecCCCEEEEEECCCCEEEE
Confidence 456666654 478889987654310 000011111 112233 445577655544 4455778999
Q ss_pred EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC
Q psy2305 92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV 169 (334)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (334)
+++..+.....+..... ....+++++++..|+.+. .+.|.+++++. ..... ...........++++|+
T Consensus 63 ~~~~g~~~~~~~~~~~~-----~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~---~~~~~~~~P~~i~vd~~ 132 (267)
T 1npe_A 63 ASLHGGEPTTIIRQDLG-----SPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRV---LFDTGLVNPRGIVTDPV 132 (267)
T ss_dssp EESSSCCCEEEECTTCC-----CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECSSCSSEEEEEEETT
T ss_pred EecCCCCcEEEEECCCC-----CccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEE---EEECCCCCccEEEEeeC
Confidence 99876544333322111 578999999877676554 68899999873 22221 11112245689999997
Q ss_pred CCcEEEEeec---CCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305 170 HPDICALGTY---SKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245 (334)
Q Consensus 170 ~~~~l~~~~~---dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 245 (334)
+. .|+.+.. .+.|..+++.. +....+ .........++++|++..|+.+....+.|.++|+.. ......+..
T Consensus 133 ~g-~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-- 207 (267)
T 1npe_A 133 RG-NLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-- 207 (267)
T ss_dssp TT-EEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEEC--
T ss_pred CC-EEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecC--
Confidence 66 4444443 46898888753 333333 223345789999998877777664678999999874 222222221
Q ss_pred cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc-cccceeeeccCCCc
Q psy2305 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ-DCTNGVRWKHHKFE 315 (334)
Q Consensus 246 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~s~~~ 315 (334)
......++.. .+.++++....+.|..+|..++ +.+..+.... .....+++ .|++
T Consensus 208 -~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g------------~~~~~i~~g~~~~p~gi~~--~~~~ 262 (267)
T 1npe_A 208 -LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS------------KEMDTFHPHKQTRLYGITI--ALSQ 262 (267)
T ss_dssp -CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT------------EEEEEECCSSCCCCCCEEE--ECSC
T ss_pred -CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC------------CceEEEccccccccceeee--cCcc
Confidence 2233455543 3444444445689999999887 5555554332 24678888 8876
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.42 E-value=1.2e-14 Score=122.61 Aligned_cols=222 Identities=13% Similarity=0.009 Sum_probs=118.7
Q ss_pred CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305 12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL 91 (334)
Q Consensus 12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i 91 (334)
++..+++++.||.|+.||..+++... .+.. ..+.+ ..+..++.++++++.|+.|+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W--------------~~~~---~~~~s-------~p~~~~g~~~v~~s~dg~l~a 63 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW--------------TLKE---DPVLQ-------VPTHVEEPAFLPDPNDGSLYT 63 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE--------------EEEC---CCSCC-------CC-----CCEEECTTTCCEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE--------------EecC---CCcee-------cceEcCCCEEEEeCCCCEEEE
Confidence 57789999999999999999998762 2221 12211 122456777888889999999
Q ss_pred EeCCCCeeeEEEcCcccccccccee-EEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC
Q psy2305 92 WDSVGGEIKATYRPYNQVDEVTHAY-SLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV 169 (334)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (334)
||.++|+.+..+...... .+. +..+. ++..+++++ ++.+..||..+ ++.... +..+. ...++|+
T Consensus 64 ~d~~tG~~~w~~~~~~~~----~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~----~~~~~----~~~~~p~ 129 (369)
T 2hz6_A 64 LGSKNNEGLTKLPFTIPE----LVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQT----LSSAF----ADSLSPS 129 (369)
T ss_dssp C-----CCSEECSCCHHH----HHTTCSCC------CCCCEEEEEEEEECCC----------------------------
T ss_pred EECCCCceeeeeeccCcc----ccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEE----ecCCC----ccccccc
Confidence 999999887666532110 110 11111 234566665 89999999987 555442 22222 2345667
Q ss_pred CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC---cEEEeeecCCCeEEEEEccCCCccceeeccccc
Q psy2305 170 HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG---ILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246 (334)
Q Consensus 170 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 246 (334)
+. .+++++.++.|+.||.++++.+..+..+. .....+.++. ..+++++ .++.++.||.++ ++.+.++..
T Consensus 130 ~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~t-G~~~W~~~~--- 201 (369)
T 2hz6_A 130 TS-LLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSES-GDVLWIQNY--- 201 (369)
T ss_dssp ----EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTT-CCEEEEEEC---
T ss_pred CC-EEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCC-CcEEEEecC---
Confidence 77 88889999999999999998776654221 1223334332 4577788 799999999987 766665542
Q ss_pred CCceE-EEEecCCCceEEee--ecCCcEEEEeCCCC
Q psy2305 247 TNQRV-YFDLTSCSNYLLSG--NTNGDLSIWNVNTS 279 (334)
Q Consensus 247 ~~~~~-~~~~s~~~~~l~~~--~~dg~i~iwd~~~~ 279 (334)
...+. ...++++|...+.. ..++.++.+|..++
T Consensus 202 ~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG 237 (369)
T 2hz6_A 202 ASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSG 237 (369)
T ss_dssp SSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCceEeccceeecccceeeeehhcC
Confidence 22232 34455666432110 01334566666554
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=116.61 Aligned_cols=181 Identities=11% Similarity=0.043 Sum_probs=101.4
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305 76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP 154 (334)
Q Consensus 76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 154 (334)
++..+++++.|+.|..||..+|+.+..+.. . .+.+..+..++..+++++ |+.|..||..+ ++...... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~--~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLP--F 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C------CSCCCC-----CCEEECTTTCCEEEC------CCSEECS--C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C------CceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeee--c
Confidence 567889999999999999999999888765 2 344555566777777765 99999999976 54433211 1
Q ss_pred cccccceE-EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305 155 WFRKNIVS-AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233 (334)
Q Consensus 155 ~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~ 233 (334)
. ....+. ...+. .+. .+++++.++.|+.||.++++.+..+..+. ...++|++..+++++ .++.|+.||.++
T Consensus 78 ~-~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~t 149 (369)
T 2hz6_A 78 T-IPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKT 149 (369)
T ss_dssp C-HHHHHTTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSS
T ss_pred c-CccccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCC
Confidence 1 001110 01111 234 67788899999999999999888776543 245567888899998 799999999988
Q ss_pred CCccceeecccccCCceEEEEecCCC---ceEEeeecCCcEEEEeCCCC
Q psy2305 234 PGCILHTFPRQVSTNQRVYFDLTSCS---NYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~ 279 (334)
++.+..+..... ....++++. ..+++++.||.|+.||..++
T Consensus 150 -G~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 150 -RELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -SSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred -CCEEEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 666665543211 112233332 56777888999999999998
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.41 E-value=4.7e-11 Score=108.37 Aligned_cols=263 Identities=14% Similarity=0.072 Sum_probs=165.2
Q ss_pred CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC------
Q psy2305 12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM------ 85 (334)
Q Consensus 12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~------ 85 (334)
++..|++++.|+.|..+|..+++....+....... ....+.. .| . -.++ .+++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----------~~~~~~~---~p---~-v~~~-~v~v~~~~~~~~~ 188 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK----------GSLTITG---AP---R-VFKG-KVIIGNGGAEYGV 188 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC----------SSCBCCS---CC---E-EETT-EEEECCBCTTTCC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC----------cCccccc---Cc---E-EECC-EEEEEecccccCC
Confidence 45678888899999999999998764332210000 0000100 00 0 0134 4444442
Q ss_pred CCcEEEEeCCCCeeeEEEcCccccc---------------------------cccceeEEEEcCCCCEEEEee-CC----
Q psy2305 86 YAPIHLWDSVGGEIKATYRPYNQVD---------------------------EVTHAYSLAFSLDGNKIYAGF-LS---- 133 (334)
Q Consensus 86 d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~~-d~---- 133 (334)
++.|..+|..+|+.+..+....... .......++++|++..++.+. ++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 6899999999999988776432210 000113578899988888765 42
Q ss_pred ---------------cEEEEEcCCCCCeeeeecccccccc-------cceEEEEEcCCC---CcEEEEeecCCeEEEEEC
Q psy2305 134 ---------------EVKIFSTDRPGRECVSRNLKPWFRK-------NIVSAIAINPVH---PDICALGTYSKIIGLFSD 188 (334)
Q Consensus 134 ---------------~i~i~d~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~ 188 (334)
.|..+|..+ ++...... ...|. ....-+....+| + .++.++.+|.++++|.
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~T-G~~~W~~~--~~~~d~wd~~~~~~p~l~~~~~dG~~~~-~l~~~~~~G~l~~lD~ 344 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDT-GKYKWHYQ--ETPGDNWDYTSTQPMILADIKIAGKPRK-VILHAPKNGFFFVLDR 344 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEE--SSTTCCSCCCCCSCCEEEEEEETTEEEE-EEEECCTTSEEEEEET
T ss_pred CCCCCccCCCCeeeEEEEEEECCC-CCEEEEEe--cCCCcccccccCCCcEEEecccCCcEee-EEEEECCCCEEEEEEC
Confidence 489999987 66655321 12221 122233344466 5 8899999999999999
Q ss_pred CCCCceEeeccCC-----------CCe------------------------EEEEEccCCcEEEeeecC-----------
Q psy2305 189 SDGRPLFFLKGHN-----------GGI------------------------THLEFSSNGILLFSGARK----------- 222 (334)
Q Consensus 189 ~~~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~~l~~~~~~----------- 222 (334)
++++.+..+.... .++ ..++++|++.++++.. .
T Consensus 345 ~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~-~~~~~~~~~~~~ 423 (677)
T 1kb0_A 345 TNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPA-QNVPVNLMDDKK 423 (677)
T ss_dssp TTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEE-EECCCEEEECTT
T ss_pred CCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeC-hhcceeeecccc
Confidence 9999876654211 011 1468899888887754 2
Q ss_pred --------------------------------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCc
Q psy2305 223 --------------------------------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD 270 (334)
Q Consensus 223 --------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 270 (334)
.+.|..||+.+ ++.+.++... .......+..++.+++.++.||.
T Consensus 424 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~ 499 (677)
T 1kb0_A 424 WEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGR 499 (677)
T ss_dssp CCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEES---SSCCCCEEEETTTEEEEECTTSE
T ss_pred cccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCC---CCCcCcceEeCCCEEEEECCCCc
Confidence 17899999988 7766666532 12222334567778888999999
Q ss_pred EEEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccCCCc
Q psy2305 271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHHKFE 315 (334)
Q Consensus 271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s~~~ 315 (334)
+++||.+++ +.+..+....+ .-.-+.| .++|
T Consensus 500 l~a~D~~tG------------~~lw~~~~~~~~~~~p~~y--~~~G 531 (677)
T 1kb0_A 500 LVAYHAATG------------EKLWEAPTGTGVVAAPSTY--MVDG 531 (677)
T ss_dssp EEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETT
T ss_pred EEEEECCCC------------ceeeeeeCCCCcccCCEEE--EeCC
Confidence 999999999 66666654332 3345667 7788
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=9.3e-11 Score=106.64 Aligned_cols=275 Identities=13% Similarity=0.074 Sum_probs=166.3
Q ss_pred CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee-----CC
Q psy2305 12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS-----MY 86 (334)
Q Consensus 12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~-----~d 86 (334)
++..|++++.|+.|..+|..+++......... +......+...| . -.++.+++..+ .+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~-------------~~~~~~~~~~sP---~-v~~g~v~vg~~~~~~~~~ 182 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA-------------DHKRSYTITGAP---R-VVNGKVVIGNGGAEFGVR 182 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCS-------------CTTSCCBCCSCC---E-EETTEEEECCBCTTTCCB
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcC-------------CCCCCccccCCc---E-EECCEEEEEeCCCccCCC
Confidence 35578888899999999999998763222110 000000000011 0 01444444322 36
Q ss_pred CcEEEEeCCCCeeeEEEcCccccc--------------------------cccceeEEEEcCCCCEEEEee-CC------
Q psy2305 87 APIHLWDSVGGEIKATYRPYNQVD--------------------------EVTHAYSLAFSLDGNKIYAGF-LS------ 133 (334)
Q Consensus 87 ~~i~iwd~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~~~~-d~------ 133 (334)
+.|..||.++|+.+..+....... .......++++|++..++.+. ++
T Consensus 183 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~ 262 (689)
T 1yiq_A 183 GYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPK 262 (689)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred CEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccC
Confidence 899999999999987775311000 000112578899888888775 54
Q ss_pred -------------cEEEEEcCCCCCeeeeecccccccc-------cceEEEEEcCCCC--cEEEEeecCCeEEEEECCCC
Q psy2305 134 -------------EVKIFSTDRPGRECVSRNLKPWFRK-------NIVSAIAINPVHP--DICALGTYSKIIGLFSDSDG 191 (334)
Q Consensus 134 -------------~i~i~d~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~ 191 (334)
.|..+|..+ ++...... ...|. .++.-.....+|+ ..++.++.+|.++++|.+++
T Consensus 263 ~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~--~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 263 WRSQAKGDNLFLSSIVAVNADT-GEYVWHYQ--TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp HHHTTCSCCTTTTEEEEEETTT-CCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred CCCCCCCCceeeeeEEEEEccC-CceeEeee--cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 399999998 66655321 11121 1222222222442 26888999999999999999
Q ss_pred CceEeeccCC----------------------------C-----------CeEEEEEccCCcEEEeeec-----------
Q psy2305 192 RPLFFLKGHN----------------------------G-----------GITHLEFSSNGILLFSGAR----------- 221 (334)
Q Consensus 192 ~~~~~~~~~~----------------------------~-----------~i~~~~~~~~~~~l~~~~~----------- 221 (334)
+.+....... . .-..++|+|+..++++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 419 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPE 419 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccc
Confidence 8874322110 0 0112688888877776531
Q ss_pred ---------------------------------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC
Q psy2305 222 ---------------------------------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN 268 (334)
Q Consensus 222 ---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 268 (334)
.+|.|+.||+.+ ++.+.++..+.. ...-.+...+.++++++.|
T Consensus 420 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~---~~~g~~~tagglvf~gt~d 495 (689)
T 1yiq_A 420 APKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVTI---FNGGTLSTAGNLVFEGSAD 495 (689)
T ss_dssp CCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESSS---CCCCEEEETTTEEEEECTT
T ss_pred cccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCCC---ccCccceECCCEEEEECCC
Confidence 037799999998 777766654321 1112345677889999999
Q ss_pred CcEEEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccCCCcccceeeEEeeec
Q psy2305 269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
|.|+.||.+++ +.+..+....+ .-.-+.| ..+|. +++++.+.
T Consensus 496 g~l~a~D~~tG------------~~lw~~~~~~~~~~~p~ty--~~~G~---qyv~~~~G 538 (689)
T 1yiq_A 496 GRVIAYAADTG------------EKLWEQPAASGVMAAPVTY--SVDGE---QYVTFMAG 538 (689)
T ss_dssp SEEEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEEC
T ss_pred CcEEEEECCCC------------ccceeeeCCCCcccCceEE--EECCE---EEEEEEec
Confidence 99999999999 66666654433 2345778 78883 46665544
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.40 E-value=2.3e-11 Score=105.66 Aligned_cols=256 Identities=10% Similarity=0.008 Sum_probs=159.9
Q ss_pred CCCcEEEEeeC-CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec-CCCcEEEEee----
Q psy2305 11 PDGTCLLTNSN-DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID-GFTSYFLCSS---- 84 (334)
Q Consensus 11 p~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~l~~~~---- 84 (334)
+||++|+.... ++.|.+.|+.+.+.. ..+..........+++. + |+++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~--------------~ii~ip~g~~phg~~~~------~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCD--------------AILEIPNAKGIHGLRPQ------KWPRSNYVFCNGEDET 158 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEE--------------EEEECSSCCSEEEEEEC------CSSBCSEEEEEECSCE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEe--------------eEEeCCCCCCCcceeee------ecCCCcEEEEeccccc
Confidence 38888877664 567999999998865 22322222334444431 4 7888887774
Q ss_pred --------------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-Cc--------------
Q psy2305 85 --------------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-SE-------------- 134 (334)
Q Consensus 85 --------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~-------------- 134 (334)
.++.+.+.|.++.+...++.... ....++++|+|+++++.+ + ..
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 24578999999998888876533 235788999999999775 3 22
Q ss_pred EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--CCc-eEeeccCCCCeEEEEEcc
Q psy2305 135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--GRP-LFFLKGHNGGITHLEFSS 211 (334)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-~~~~~~~~~~i~~~~~~~ 211 (334)
+.+.|... . ..+.++|+ .... +.|.+.|.++ ++. +..+.. .....++.++|
T Consensus 233 v~V~~~~~--------------~------~~~v~~Gk-~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP 286 (595)
T 1fwx_A 233 IVVFNIAE--------------I------EKAIAAGD-YQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAP 286 (595)
T ss_dssp EEEEEHHH--------------H------HHHHHHTC-SEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECT
T ss_pred EEEeeccc--------------e------eEeccCCC-eeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcC
Confidence 33333221 0 01234565 3332 4599999988 555 455543 23456899999
Q ss_pred CCcEEEeeecCCCeEEEEEccCCCcc--------ce-eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCC
Q psy2305 212 NGILLFSGARKDCEIICWDLRNPGCI--------LH-TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP 282 (334)
Q Consensus 212 ~~~~l~~~~~~d~~i~iwd~~~~~~~--------~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 282 (334)
||+++++++..+.++.++|+.+ .+. .. ....-..+.....++|+|+|...++...|++|.+||+......
T Consensus 287 DGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~ 365 (595)
T 1fwx_A 287 DKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRA 365 (595)
T ss_dssp TSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHH
T ss_pred CCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhh
Confidence 9999888876789999999985 210 00 1111112455778999999944455666999999998762100
Q ss_pred CCCCccccccccceeccc-----ccccceeeeccCCCcccceeeEEeeec
Q psy2305 283 SSPYEESVQEPLYKFSAH-----QDCTNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
+ ..+...+.+..+..| ...-..+.. +||| ++|+++..
T Consensus 366 ~--~g~~~~~vi~kidV~yqpGh~~~~~g~t~--~~DG----k~l~~~Nk 407 (595)
T 1fwx_A 366 Y--AGEKVDPIKDKLDVHYQPGHLKTVMGETL--DATN----DWLVCLSK 407 (595)
T ss_dssp H--HTCSCCCEEEEEECSSCEEEEEETTTTST--TCCS----SEEEEEES
T ss_pred h--cccccceeEEEeecccccccceeccceEe--CCCC----CEEEEcCC
Confidence 0 000001345555443 223355677 9999 99888743
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.39 E-value=1.9e-11 Score=101.93 Aligned_cols=248 Identities=8% Similarity=-0.094 Sum_probs=155.8
Q ss_pred eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee----------CCCcEEEEe
Q psy2305 24 HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS----------MYAPIHLWD 93 (334)
Q Consensus 24 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~----------~d~~i~iwd 93 (334)
+|.++|..+++.. ..+..+.. | .+.++||+++++++. .++.|.+||
T Consensus 47 ~vsvID~~t~~v~--------------~~i~vG~~---------P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD 102 (368)
T 1mda_H 47 ENWVSCAGCGVTL--------------GHSLGAFL---------S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102 (368)
T ss_dssp EEEEEETTTTEEE--------------EEEEECTT---------C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred eEEEEECCCCeEE--------------EEEeCCCC---------C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 8889999998876 34433322 3 355588999988886 367899999
Q ss_pred CCCCeeeEEEcCccccc--cccceeEEEEcCCCCEEEEee---CCcEEE--EEcCCCCCeeeeecccccccccceEEEEE
Q psy2305 94 SVGGEIKATYRPYNQVD--EVTHAYSLAFSLDGNKIYAGF---LSEVKI--FSTDRPGRECVSRNLKPWFRKNIVSAIAI 166 (334)
Q Consensus 94 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~---d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (334)
+.+++.+..+....... .......++++|||++++++. ...+.+ +|+.+ ....+ .. .. +.+
T Consensus 103 ~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~--v~---~~---~~~ 170 (368)
T 1mda_H 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTK--SA---SC---FHI 170 (368)
T ss_dssp TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEE--CS---SC---CCC
T ss_pred CCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEE--CC---Cc---eEE
Confidence 99999998886431000 001356899999999999774 357888 88874 22211 11 11 223
Q ss_pred cCCCCcEEEEeecCCeEEEEECCC-----CCceE----eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC-c
Q psy2305 167 NPVHPDICALGTYSKIIGLFSDSD-----GRPLF----FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG-C 236 (334)
Q Consensus 167 ~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~-~ 236 (334)
.|+++..+++.+.|+.+.+.|+.+ ++... .+.-...+. . ++++..++..+ . +.+.+.|..... .
T Consensus 171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~~~~~ 244 (368)
T 1mda_H 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPAAGAT 244 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECCSSCCE
T ss_pred ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECCCCcce
Confidence 456654666677888888888876 33221 111122333 3 67777777888 6 999999986421 1
Q ss_pred cceeeccc--------ccCCceEEEEecCCCceEEeeec-C--------CcEEEEeCCCCCCCCCCCccccccccceecc
Q psy2305 237 ILHTFPRQ--------VSTNQRVYFDLTSCSNYLLSGNT-N--------GDLSIWNVNTSNLPSSPYEESVQEPLYKFSA 299 (334)
Q Consensus 237 ~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 299 (334)
....+... ........++++|+++.++++.. . +.+.++|+.+. +.+..+..
T Consensus 245 v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~------------~vv~~i~v 312 (368)
T 1mda_H 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG------------QTSGPISN 312 (368)
T ss_dssp EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------------CEEECCEE
T ss_pred EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC------------eEEEEEEC
Confidence 11111100 00011111568999988876543 2 35679999998 56666654
Q ss_pred cccccceeeeccCCCccccee-eEEeee-cceeee
Q psy2305 300 HQDCTNGVRWKHHKFERDLLV-ADATCS-GQITNV 332 (334)
Q Consensus 300 ~~~~i~~~~~~~s~~~~~~~~-~l~t~~-~d~~i~ 332 (334)
.. ....++| +||+ + ++++.. .++.|.
T Consensus 313 g~-~p~gi~~--s~Dg----~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 313 GH-DSDAIIA--AQDG----ASDNYANSAGTEVLD 340 (368)
T ss_dssp EE-EECEEEE--CCSS----SCEEEEEETTTTEEE
T ss_pred CC-CcceEEE--CCCC----CEEEEEccCCCCeEE
Confidence 33 5789999 9999 7 455555 477664
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.36 E-value=1.5e-09 Score=85.78 Aligned_cols=198 Identities=11% Similarity=0.003 Sum_probs=131.5
Q ss_pred eeEEEEcCCCcEEEEeeC--CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 4 EEDVDEAPDGTCLLTNSN--DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
...++|+||+...++.+. ++.|+++|+.+++... .+..........+.+ + .+++.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~--------------~i~l~~~~fgeGi~~-------~-g~~lyv 80 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVEN--------------IHKMDDSYFGEGLTL-------L-NEKLYQ 80 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEE--------------EEECCTTCCEEEEEE-------E-TTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEE--------------EEecCCCcceEEEEE-------e-CCEEEE
Confidence 468999998754444443 5799999999998763 221111111112222 2 234445
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-ccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-RKN 159 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-~~~ 159 (334)
+.-.++.+.++|..+.+.+..+... .. . ...+++||+.|+++. ++.|.++|..+ .+.....++...+ .-.
T Consensus 81 ~t~~~~~v~viD~~t~~v~~~i~~g--~~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLSNIKNFTHQ--MK---D--GWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHRVI 152 (266)
T ss_dssp EETTCSEEEEEETTTTEEEEEEECC--SS---S--CCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEECC
T ss_pred EEecCCEEEEEECCCCcEEEEEECC--CC---C--eEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcccc
Confidence 5556889999999999999888643 11 1 233566888787665 78999999986 4555443211111 112
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------------CCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------------NGGITHLEFSSNGILLFSGARKDCEI 226 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~~d~~i 226 (334)
.++.+.|. ++. +++....++.|.+.|..+++.+..+... ......++|+|+++.|++++...+.+
T Consensus 153 ~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 153 RLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp CEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred cceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 46788888 665 6666656889999999999988887531 13568999999988666655478889
Q ss_pred EEEEccC
Q psy2305 227 ICWDLRN 233 (334)
Q Consensus 227 ~iwd~~~ 233 (334)
...++..
T Consensus 231 ~~i~l~~ 237 (266)
T 2iwa_A 231 FEIKLHL 237 (266)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9988875
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.30 E-value=4.8e-09 Score=88.61 Aligned_cols=236 Identities=12% Similarity=0.042 Sum_probs=135.9
Q ss_pred CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305 12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL 91 (334)
Q Consensus 12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i 91 (334)
++..+++++.++.|..+|..+++............. .......+.. .| ..++..+++++.++.|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~------~~~~~~~~~~---~~-----~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW------FSKEPALLSG---GV-----TVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C------CSCCCCCEEE---EE-----EEETTEEEEEETTSEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc------ccccCccccc---Cc-----eEeCCEEEEEcCCCEEEE
Confidence 355788888889999999999887532211100000 0000111111 11 114456777888999999
Q ss_pred EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc-ccceEEEEEcCC
Q psy2305 92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR-KNIVSAIAINPV 169 (334)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 169 (334)
+|.++|+.+......... ....... ++ .++++. ++.+..+|..+ ++............ ..........
T Consensus 118 ~d~~tG~~~W~~~~~~~~-----~~~p~~~-~~-~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~-- 187 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEA-----LSRPVVS-DG-LVLIHTSNGQLQALNEAD-GAVKWTVNLDMPSLSLRGESAPTTA-- 187 (376)
T ss_dssp EETTTCCEEEEEECSSCC-----CSCCEEE-TT-EEEEECTTSEEEEEETTT-CCEEEEEECCC-----CCCCCCEEE--
T ss_pred EECCCCCEEEEEeCCCce-----EcCCEEE-CC-EEEEEcCCCeEEEEECCC-CcEEEEEeCCCCceeecCCCCcEEE--
Confidence 999999988776543321 1111122 33 555555 89999999987 65554321100000 0000112222
Q ss_pred CCcEEEEeecCCeEEEEECCCCCceEeeccCCCC----eEE---EEEcc--CCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305 170 HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG----ITH---LEFSS--NGILLFSGARKDCEIICWDLRNPGCILHT 240 (334)
Q Consensus 170 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----i~~---~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~~~~~ 240 (334)
+. .++.+..++.+..+|.++++.+......... +.. +.-.| .+..++.++ .++.+..+|.++ ++.+..
T Consensus 188 ~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~t-G~~~w~ 264 (376)
T 3q7m_A 188 FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRS-GQIMWK 264 (376)
T ss_dssp TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTT-CCEEEE
T ss_pred CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCC-CcEEee
Confidence 33 6777888999999999999887666422110 000 11111 245677777 799999999987 665555
Q ss_pred ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
.... ....+.. ++..++.++.++.|..+|..+++
T Consensus 265 ~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 265 RELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp ECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred ccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 4421 1223332 35677777889999999999883
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=1e-09 Score=99.69 Aligned_cols=284 Identities=9% Similarity=0.049 Sum_probs=167.2
Q ss_pred CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305 13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW 92 (334)
Q Consensus 13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw 92 (334)
+..|++++.++.|.-+|..+++..-.+........... ... ..+. ..+++ ++..|++++.|+.|..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~--~~~---~~~~------~~~a~--~~~~v~v~~~dg~l~al 143 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFK--GCC---DVVN------RGVAL--WKGKVYVGAWDGRLIAL 143 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGG--SSS---CSCC------CCCEE--ETTEEEEECTTSEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccc--ccc---cCCC------CCceE--ECCEEEEEcCCCEEEEE
Confidence 44567777788999999999887632221110000000 000 0000 01111 45567888889999999
Q ss_pred eCCCCeeeEEEcCc-cccccccceeEEEEcCCCCEEEEee------CCcEEEEEcCCCCCeeeeeccccc----------
Q psy2305 93 DSVGGEIKATYRPY-NQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKPW---------- 155 (334)
Q Consensus 93 d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~---------- 155 (334)
|..+|+.+..+... .... ...+.+.-.-.++..++... ++.|..+|..+ ++.+........
T Consensus 144 D~~tG~~~W~~~~~~~~~~-~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 144 DAATGKEVWHQNTFEGQKG-SLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET-GERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ETTTCCEEEEEETTTTCCS-SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCSSHH
T ss_pred ECCCCCEEeeecCCcCcCc-CcccccCcEEECCEEEEEecccccCCCCEEEEEECCC-CcEEEEeccCCCCccccccccc
Confidence 99999998887754 1100 00111100111344333322 58899999987 665543211000
Q ss_pred ------------------ccccceEEEEEcCCCCcEEEEeecCC-------------------eEEEEECCCCCceEeec
Q psy2305 156 ------------------FRKNIVSAIAINPVHPDICALGTYSK-------------------IIGLFSDSDGRPLFFLK 198 (334)
Q Consensus 156 ------------------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~ 198 (334)
+.......++++|++. .++.+..++ .|..+|.++++.+..++
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~ 300 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ 300 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence 1111123578899888 888776654 59999999999887765
Q ss_pred c--CC-------CCeEEEEEccCC---cEEEeeecCCCeEEEEEccCCCccceeeccccc---------CCce-------
Q psy2305 199 G--HN-------GGITHLEFSSNG---ILLFSGARKDCEIICWDLRNPGCILHTFPRQVS---------TNQR------- 250 (334)
Q Consensus 199 ~--~~-------~~i~~~~~~~~~---~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~------- 250 (334)
. |. ....-+....+| +.++.++ .+|.++++|..+ ++.+..+..... ...+
T Consensus 301 ~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 378 (677)
T 1kb0_A 301 ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARD 378 (677)
T ss_dssp SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGC
T ss_pred cCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCc
Confidence 3 21 112223344477 6788888 899999999988 766654432100 0000
Q ss_pred -----------------EEEEecCCCceEEeeecC-------------------------------------------Cc
Q psy2305 251 -----------------VYFDLTSCSNYLLSGNTN-------------------------------------------GD 270 (334)
Q Consensus 251 -----------------~~~~~s~~~~~l~~~~~d-------------------------------------------g~ 270 (334)
..++++|++.++++...+ |.
T Consensus 379 ~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 458 (677)
T 1kb0_A 379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR 458 (677)
T ss_dssp TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred CCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE
Confidence 135778988888765432 67
Q ss_pred EEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
|..||+.++ +.+..+. +...+....+ ..++ .+++.++.||.++.
T Consensus 459 l~A~D~~tG------------~~~W~~~-~~~~~~~g~~--~~~g----~~v~~g~~dg~l~a 502 (677)
T 1kb0_A 459 LLAWDPVAQ------------KAAWSVE-HVSPWNGGTL--TTAG----NVVFQGTADGRLVA 502 (677)
T ss_dssp EEEEETTTT------------EEEEEEE-ESSSCCCCEE--EETT----TEEEEECTTSEEEE
T ss_pred EEEEeCCCC------------cEEeecC-CCCCCcCcce--EeCC----CEEEEECCCCcEEE
Confidence 899999988 4444443 2334555666 6677 77888888888764
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=1.9e-09 Score=98.12 Aligned_cols=206 Identities=11% Similarity=0.084 Sum_probs=121.5
Q ss_pred CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305 13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW 92 (334)
Q Consensus 13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw 92 (334)
+..|++++.++.|.-+|..+++..-.+.......... .. ....+. ..++ ..+..|++++.|+.|..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~--~~---~~~~~~------~~~~--~~~g~v~v~~~dg~l~Al 136 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAG--EA---CCDAVN------RGVA--VWKGKVYVGVLDGRLEAI 136 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGG--GC---TTCSCC------CCCE--EETTEEEEECTTSEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccc--cc---cccCCC------CccE--EECCEEEEEccCCEEEEE
Confidence 4567777788899999999998764322110000000 00 000000 0011 134567888889999999
Q ss_pred eCCCCeeeEEEcCccccccccceeEEEEcC---CCCEEEEee------CCcEEEEEcCCCCCeeeeecccc-c-------
Q psy2305 93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSL---DGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKP-W------- 155 (334)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~-~------- 155 (334)
|.++|+.+..+....... ....+..+| ++..++..+ ++.|..||..+ ++.+....... .
T Consensus 137 Da~TG~~~W~~~~~~~~~---~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~~~ 212 (689)
T 1yiq_A 137 DAKTGQRAWSVDTRADHK---RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAET-GKEAWRFYTVPGDPKLPPEG 212 (689)
T ss_dssp ETTTCCEEEEEECCSCTT---SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCCS
T ss_pred ECCCCCEeeeecCcCCCC---CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCC-CcEEEEecccCCCccccccc
Confidence 999999988776530100 001111111 444444221 58899999998 66554321000 0
Q ss_pred -------------------ccccceEEEEEcCCCCcEEEEeecCCe-------------------EEEEECCCCCceEee
Q psy2305 156 -------------------FRKNIVSAIAINPVHPDICALGTYSKI-------------------IGLFSDSDGRPLFFL 197 (334)
Q Consensus 156 -------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~ 197 (334)
+.......++++|+.. +++.+..++. |..+|.++++.+-.+
T Consensus 213 ~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~ 291 (689)
T 1yiq_A 213 KGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY 291 (689)
T ss_dssp HHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred ccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee
Confidence 1111123578899888 8888887764 999999999988777
Q ss_pred cc--CC-------CCeEEEEEccCCc---EEEeeecCCCeEEEEEccCCCccc
Q psy2305 198 KG--HN-------GGITHLEFSSNGI---LLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 198 ~~--~~-------~~i~~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
+. |. .+..-.....+|+ .++.++ .+|.++++|.++ ++++
T Consensus 292 ~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~l 342 (689)
T 1yiq_A 292 QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRAT-GELL 342 (689)
T ss_dssp ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTT-CCEE
T ss_pred ecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCC-CCEe
Confidence 53 21 1222223333665 788888 899999999988 6655
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.28 E-value=4.7e-10 Score=92.86 Aligned_cols=213 Identities=14% Similarity=0.064 Sum_probs=139.4
Q ss_pred CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccc
Q psy2305 77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+..|..++.++.|..+|.. ++.......... .+.++...+++..++...++.+..+|.. +..... ...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~vgt~~~~l~~~d~~--g~~~~~----~~~ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA-----IYATPIVSEDGTIYVGSNDNYLYAINPD--GTEKWR----FKT 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSC-----CCSCCEECTTSCEEEECTTSEEEEECTT--SCEEEE----EEC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc-----eeeeeEEcCCCEEEEEcCCCEEEEECCC--CCEeEE----Eec
Confidence 3456777778899999987 777665554322 4566777778875554447999999987 444432 222
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
....+.++...+++. +. .++ +.|..+| .+++....+......+.++...++|. |..++ .++.+..+|.. +.
T Consensus 175 ~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~~gl~~~~~~--g~ 245 (330)
T 3hxj_A 175 NDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTS-LDGHLYAINPD--GT 245 (330)
T ss_dssp SSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEE-TTTEEEEECTT--SC
T ss_pred CCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEc-CCCeEEEECCC--CC
Confidence 344566777878886 44 454 8899999 77777776665556678888888875 55566 57888888743 44
Q ss_pred cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER 316 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~ 316 (334)
.+..+... ......+...+++ .|..++.+|.|..+|. ++ +.+..+......+.++.. .+++
T Consensus 246 ~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g------------~~~~~~~~~~~~~~~~~~--d~~g- 306 (330)
T 3hxj_A 246 EKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DG------------TEKWNFETGSWIIATPVI--DENG- 306 (330)
T ss_dssp EEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TS------------CEEEEEECSSCCCSCCEE--CTTC-
T ss_pred EeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CC------------cEEEEEEcCCccccceEE--cCCC-
Confidence 44444432 1112223344555 4556677888999996 44 344444444556777777 7887
Q ss_pred cceeeEEeeecceeeee
Q psy2305 317 DLLVADATCSGQITNVK 333 (334)
Q Consensus 317 ~~~~~l~t~~~d~~i~~ 333 (334)
. |..++.+|.++.
T Consensus 307 ---~-l~~gt~~G~~~~ 319 (330)
T 3hxj_A 307 ---T-IYFGTRNGKFYA 319 (330)
T ss_dssp ---C-EEEECTTSCEEE
T ss_pred ---E-EEEEcCCCeEEE
Confidence 5 566888887764
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.27 E-value=1.9e-09 Score=85.23 Aligned_cols=193 Identities=9% Similarity=-0.015 Sum_probs=128.4
Q ss_pred cceecCCCcEEEEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC
Q psy2305 70 TSSIDGFTSYFLCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR 145 (334)
Q Consensus 70 ~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~ 145 (334)
.+.+++++.++++.+. ++.|.++|+.+++.+..+....+. ....+++. +..|+.+. ++.+.++|..+ .+
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~----fgeGi~~~--g~~lyv~t~~~~~v~viD~~t-~~ 97 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY----FGEGLTLL--NEKLYQVVWLKNIGFIYDRRT-LS 97 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC----CEEEEEEE--TTEEEEEETTCSEEEEEETTT-TE
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc----ceEEEEEe--CCEEEEEEecCCEEEEEECCC-Cc
Confidence 3455778765555543 578999999999998887642221 22345554 55676554 89999999986 55
Q ss_pred eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----CCeEEEEEccCCcEEEeee
Q psy2305 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----GGITHLEFSSNGILLFSGA 220 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~ 220 (334)
.+..++ .+... ...++++|+ .++++..++.|.++|.++.+.+..+.-.. ..+..+.|. +|+..+...
T Consensus 98 v~~~i~---~g~~~---g~glt~Dg~-~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 98 NIKNFT---HQMKD---GWGLATDGK-ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp EEEEEE---CCSSS---CCEEEECSS-SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred EEEEEE---CCCCC---eEEEEECCC-EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 555422 11111 233566777 55555578999999999988887775321 246788888 775444443
Q ss_pred cCCCeEEEEEccCCCccceeecccc-----------cCCceEEEEecCCCceEE-eeecCCcEEEEeCCCC
Q psy2305 221 RKDCEIICWDLRNPGCILHTFPRQV-----------STNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTS 279 (334)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~ 279 (334)
.++.|.+.|..+ ++.+..+.... .......++|+|+++.++ ++...+++...++...
T Consensus 170 -~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 170 -QTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -TSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CCCeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 688999999998 77766665321 113456899999986554 5556788988888764
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=2e-08 Score=84.79 Aligned_cols=262 Identities=10% Similarity=0.052 Sum_probs=152.6
Q ss_pred CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305 12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL 91 (334)
Q Consensus 12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i 91 (334)
++..+++++.++.|..+|..+++....... ...+.. ...+ .+..+++++.++.|..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~----------------~~~~~~------~p~~--~~~~v~v~~~~g~l~~ 157 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKV----------------AGEALS------RPVV--SDGLVLIHTSNGQLQA 157 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEEC----------------SSCCCS------CCEE--ETTEEEEECTTSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeC----------------CCceEc------CCEE--ECCEEEEEcCCCeEEE
Confidence 455677888899999999999886521111 111100 0011 2346777888999999
Q ss_pred EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc---c---e-EE
Q psy2305 92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN---I---V-SA 163 (334)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~---v-~~ 163 (334)
+|..+|+.+..+.................. +..++.+. ++.+..+|..+ ++.............. . + ..
T Consensus 158 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3q7m_A 158 LNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRLSDVDTT 234 (376)
T ss_dssp EETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT-CCEEEEEECCC-----------CCCCC
T ss_pred EECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCcccccccccCCC
Confidence 999999988776543211000000111222 34566665 89999999987 5554432110000000 0 0 01
Q ss_pred EEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc
Q psy2305 164 IAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR 243 (334)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~ 243 (334)
... .+. .++.++.++.+..+|.++++.+..... .....+.. ++..|+.++ .++.+..+|..+ ++.+.....
T Consensus 235 p~~--~~~-~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~-~~g~l~~~d~~t-G~~~w~~~~ 305 (376)
T 3q7m_A 235 PVV--VNG-VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVD-QNDRVMALTIDG-GVTLWTQSD 305 (376)
T ss_dssp CEE--ETT-EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEE-TTCCEEEEETTT-CCEEEEECT
T ss_pred cEE--ECC-EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEc-CCCeEEEEECCC-CcEEEeecc
Confidence 111 133 677788899999999999988766542 23444444 356788888 799999999987 665555441
Q ss_pred cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccce-eeeccCCCcccceeeE
Q psy2305 244 QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG-VRWKHHKFERDLLVAD 322 (334)
Q Consensus 244 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~s~~~~~~~~~l 322 (334)
.. ......... .+..|+.++.+|.|..+|..++ +.+.........+.. ... .+ ..|
T Consensus 306 ~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG------------~~~~~~~~~~~~~~~~~~~----~~----~~l 362 (376)
T 3q7m_A 306 LL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG------------RFVAQQKVDSSGFQTEPVA----AD----GKL 362 (376)
T ss_dssp TT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTC------------CEEEEEECCTTCBCSCCEE----ET----TEE
T ss_pred cC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCCcceeCCEE----EC----CEE
Confidence 11 111111111 2467778888999999999998 555544432333332 333 23 457
Q ss_pred Eeeecceeee
Q psy2305 323 ATCSGQITNV 332 (334)
Q Consensus 323 ~t~~~d~~i~ 332 (334)
+.++.||.++
T Consensus 363 ~v~~~~G~l~ 372 (376)
T 3q7m_A 363 LIQAKDGTVY 372 (376)
T ss_dssp EEEBTTSCEE
T ss_pred EEEeCCCEEE
Confidence 7788888765
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.26 E-value=6.3e-09 Score=81.28 Aligned_cols=192 Identities=7% Similarity=0.018 Sum_probs=124.6
Q ss_pred eeEEEEcCCCcEEEEeeCCC--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC-cEE
Q psy2305 4 EEDVDEAPDGTCLLTNSNDN--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT-SYF 80 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~l 80 (334)
...+.|+ ++.++.+.+.+| .|+++|+.+++... .+... ...... .+.+++ ++.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~--------------~~~l~--~~~Fge-------Git~~g~~ly 100 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ--------------QIELG--KRYFGE-------GISDWKDKIV 100 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE--------------EEECC--TTCCEE-------EEEEETTEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE--------------EEecC--Ccccee-------EEEEeCCEEE
Confidence 4678888 676666666665 89999999998763 22111 111110 012233 344
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc-
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK- 158 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~- 158 (334)
+..-.++.+.++|.++.+.+.++.... ....+++|++.|+.+. ++.|.++|..+ .+....+.....+..
T Consensus 101 ~ltw~~~~v~v~D~~t~~~~~ti~~~~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNLRQVRSFNYDG--------EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEEL 171 (262)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSS--------CCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEEC
T ss_pred EEEeeCCEEEEEECccCcEEEEEECCC--------CceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccc
Confidence 444568899999999999999887532 1233446777777665 78899999987 555554322111222
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------------CCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------------NGGITHLEFSSNGILLFSGARKDCEI 226 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~~d~~i 226 (334)
..++.+.|. +|. +.+..-.+..|.+.|.++++.+..+... ....+.|+|+|+++.|++.+ ..--
T Consensus 172 ~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG--K~Wp 247 (262)
T 3nol_A 172 PELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG--KLWP 247 (262)
T ss_dssp CCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE--TTCS
T ss_pred cccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC--CCCC
Confidence 345567776 676 6666667889999999999988776431 13568999999988888777 3334
Q ss_pred EEEEcc
Q psy2305 227 ICWDLR 232 (334)
Q Consensus 227 ~iwd~~ 232 (334)
++|.++
T Consensus 248 ~~~ev~ 253 (262)
T 3nol_A 248 KVFEIT 253 (262)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 444443
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.24 E-value=1.7e-08 Score=83.25 Aligned_cols=255 Identities=12% Similarity=0.077 Sum_probs=141.5
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCC--Ccce---eeeeeeceeEEEEEEecccceecC-C
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRP--KLNY---TLKIKEGGIIYDYVWYPKTSSIDG-F 76 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~v~~~~~~~~~~~~s~-~ 76 (334)
...+++++++|++++++..++.|..|+..++.... +........ .... ............ +++++ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g-------i~~~~~~ 91 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYD-------ISYNLQN 91 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEE-------EEEETTT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCce-------EEEcCCC
Confidence 34678899999878888888999999887655431 000000000 0000 000000112344 44476 5
Q ss_pred CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee------------------CCcEEE
Q psy2305 77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF------------------LSEVKI 137 (334)
Q Consensus 77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------------------d~~i~i 137 (334)
+++++ +...+.|..+|..+++.. .+...........+..+++.+ +|++.++.. ++.|..
T Consensus 92 g~l~v-~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 92 NQLYI-VDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TEEEE-EETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred CcEEE-EECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 65444 444445888887655432 222111100111468899999 998776542 256777
Q ss_pred EEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCC--ceEeeccCCCCeEEEEEccCCc
Q psy2305 138 FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGI 214 (334)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 214 (334)
+|... + .... ..........++++|+++ .|+.+ ...+.|..|++.... ....+....+ ...+++.++|+
T Consensus 170 ~d~~~-~-~~~~----~~~~~~~p~gia~~~dg~-~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 170 YDPST-K-ETTL----LLKELHVPGGAEVSADSS-FVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp EETTT-T-EEEE----EEEEESCCCEEEECTTSS-EEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred EeCCC-C-EEEE----eccCCccCcceEECCCCC-EEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence 88763 2 2221 111123456799999998 55554 556899999987532 1222221223 78899999998
Q ss_pred EEEeeecC----------CCeEEEEEccCCCccceeeccccc--CCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 215 LLFSGARK----------DCEIICWDLRNPGCILHTFPRQVS--TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 215 ~l~~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
+.++.. . .+.|..+|.. ++.+..+..... ...+..+.+ .+++++++...++.|..+++...
T Consensus 242 l~va~~-~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 242 FWVSSS-EELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEEE-EETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEEEec-CcccccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 666554 3 3556777654 555555543211 123444544 46666666667888999998754
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.21 E-value=2.7e-08 Score=81.46 Aligned_cols=225 Identities=10% Similarity=0.015 Sum_probs=132.1
Q ss_pred ccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC--cEEEEEcCCCCC
Q psy2305 69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS--EVKIFSTDRPGR 145 (334)
Q Consensus 69 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~~ 145 (334)
..++++++++++++-..++.|..||... +....+... . .+..+++.++|+++++.. .. .|..+|..+ ++
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~-~-----~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~ 106 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVE-G-----KVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GT 106 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECS-S-----EEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SC
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCC-C-----CceeEEEcCCCcEEEEeccCCcceEEEEcCCC-Ce
Confidence 3455688998777766788999999765 343333321 1 678999999999666553 32 366666554 33
Q ss_pred eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEee---------ccCCCCeEEEEEccCCcE
Q psy2305 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFL---------KGHNGGITHLEFSSNGIL 215 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~---------~~~~~~i~~~~~~~~~~~ 215 (334)
..... .. ........++..+++. .+++-..++.|+.+|..+++. +... ...-.....+ +|+++.
T Consensus 107 ~~~~~--~~-~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 107 VETLL--TL-PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp EEEEE--EC-TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred EEEEE--eC-CCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 32210 11 1122334556556554 555544688999999765421 1100 0111234556 888887
Q ss_pred EEeeecCCCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccc
Q psy2305 216 LFSGARKDCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP 293 (334)
Q Consensus 216 l~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 293 (334)
|+++....+.|..+++...+.. ...+.. ......++++++|+++++....+.|.+++.. ++. ..
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~----------~~ 246 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST----------TI 246 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE----------EE
T ss_pred EEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE----------EE
Confidence 7776646789999998742221 111111 1123347788999887777778899999976 311 11
Q ss_pred cceecccccccceeeeccC---CCcccceeeEEeeec
Q psy2305 294 LYKFSAHQDCTNGVRWKHH---KFERDLLVADATCSG 327 (334)
Q Consensus 294 ~~~~~~~~~~i~~~~~~~s---~~~~~~~~~l~t~~~ 327 (334)
+..+........+++| . |++ +.|..++.
T Consensus 247 ~~~~~~~~~~p~~~a~--~g~~~d~----~~LyVt~~ 277 (306)
T 2p4o_A 247 IAQAEQGVIGSTAVAF--GQTEGDC----TAIYVVTN 277 (306)
T ss_dssp EECGGGTCTTEEEEEE--CCSTTTT----TEEEEEEC
T ss_pred EeecccccCCceEEEE--ecccCCC----CEEEEECC
Confidence 2222222345789999 8 887 55555443
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.17 E-value=1.2e-09 Score=95.03 Aligned_cols=196 Identities=10% Similarity=-0.035 Sum_probs=129.4
Q ss_pred eeEEEE-c-CCCcEEEEee------------------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEE
Q psy2305 4 EEDVDE-A-PDGTCLLTNS------------------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYD 63 (334)
Q Consensus 4 V~~~~~-s-p~~~~l~~~~------------------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 63 (334)
...+++ + |+++++++++ .++.+.+.|.++.+... .+... +
T Consensus 136 phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~--------------qI~Vg--g---- 195 (595)
T 1fwx_A 136 IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW--------------QVLVS--G---- 195 (595)
T ss_dssp EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE--------------EEEES--S----
T ss_pred CcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE--------------EEEeC--C----
Confidence 457777 5 8999998884 34578888988776542 11110 0
Q ss_pred EEEecccceecCCCcEEEEeeCCC--------------------------------------cEEEEeCCC--Cee-eEE
Q psy2305 64 YVWYPKTSSIDGFTSYFLCSSMYA--------------------------------------PIHLWDSVG--GEI-KAT 102 (334)
Q Consensus 64 ~~~~~~~~~~s~~~~~l~~~~~d~--------------------------------------~i~iwd~~~--~~~-~~~ 102 (334)
.|..++++|+|+++++.+.+. .|.+.|..+ ++. +..
T Consensus 196 ---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~ 272 (595)
T 1fwx_A 196 ---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY 272 (595)
T ss_dssp ---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE
T ss_pred ---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEE
Confidence 233455577777777666432 477777776 444 444
Q ss_pred EcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC----------eeeeecccccccccceEEEEEcCCC
Q psy2305 103 YRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR----------ECVSRNLKPWFRKNIVSAIAINPVH 170 (334)
Q Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (334)
+.... ...++.++|||++++++. +.+|.++|+.+... .+.. ...-......++|+|+|
T Consensus 273 Ipvg~------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~----~v~vG~gP~h~aF~~dG 342 (595)
T 1fwx_A 273 IPIAN------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA----EPELGLGPLHTAFDGRG 342 (595)
T ss_dssp EEEES------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE----CCBCCSCEEEEEECTTS
T ss_pred EecCC------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE----EcCCCCCcceEEECCCC
Confidence 44322 567999999999998775 89999999985110 0111 11223457889999999
Q ss_pred CcEEEEeecCCeEEEEECCC----------CCceEeeccCCCCe-----EEEEEccCCcEEEeeecCC-CeE--------
Q psy2305 171 PDICALGTYSKIIGLFSDSD----------GRPLFFLKGHNGGI-----THLEFSSNGILLFSGARKD-CEI-------- 226 (334)
Q Consensus 171 ~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~~d-~~i-------- 226 (334)
. ..++...|+.|.+||+.+ .+.+.++..|-.+- .++.++|||++|+++.+.. ..+
T Consensus 343 ~-aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~ 421 (595)
T 1fwx_A 343 N-AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKP 421 (595)
T ss_dssp E-EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCC
T ss_pred e-EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCC
Confidence 4 778888899999999976 45666666554432 1234589999999987422 233
Q ss_pred ---EEEEccC
Q psy2305 227 ---ICWDLRN 233 (334)
Q Consensus 227 ---~iwd~~~ 233 (334)
.++|+..
T Consensus 422 ~~~ql~dis~ 431 (595)
T 1fwx_A 422 ENDQLIDISG 431 (595)
T ss_dssp EEEEEEECSS
T ss_pred CcceEEEcCC
Confidence 7889853
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.17 E-value=5.4e-08 Score=80.28 Aligned_cols=202 Identities=8% Similarity=0.079 Sum_probs=122.0
Q ss_pred cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccc---------------cccccceeEEEEcC-CCCEEEEee
Q psy2305 68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQ---------------VDEVTHAYSLAFSL-DGNKIYAGF 131 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~-~~~~l~~~~ 131 (334)
|..++++++++++.++..++.|..|+..+++.. .+..... ......+..+++.+ +++++++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 455667889987888888899999998765443 2221000 00012578999998 665555544
Q ss_pred CCcEEEEEcCCCCCeeeeeccccc-ccccceEEEEEcC-CCCcEEEEeec-----------------CCeEEEEECCCCC
Q psy2305 132 LSEVKIFSTDRPGRECVSRNLKPW-FRKNIVSAIAINP-VHPDICALGTY-----------------SKIIGLFSDSDGR 192 (334)
Q Consensus 132 d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~i~d~~~~~ 192 (334)
.+.+..+|... ........... ........+++.+ +|. +.++-.. ++.|..||..+++
T Consensus 100 ~~~i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 100 YYHLSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTEEEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCEEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 55588888663 22221100111 1123578899999 897 5554322 3779999987665
Q ss_pred ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC-ccceeecccccCCceEEEEecCCCceEEeeec----
Q psy2305 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG-CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT---- 267 (334)
Q Consensus 193 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---- 267 (334)
...... .......++++|+|+.|+++....+.|.+|++.... .....+.. ... ...+++.++|++.++...
T Consensus 177 ~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 177 TTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecCcccc
Confidence 432222 122345799999999777664256899999987421 11122221 122 566889999987766544
Q ss_pred ------CCcEEEEeCC
Q psy2305 268 ------NGDLSIWNVN 277 (334)
Q Consensus 268 ------dg~i~iwd~~ 277 (334)
.+.|..+|..
T Consensus 253 ~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF 268 (322)
T ss_dssp STTSCEEEEEEEECTT
T ss_pred cccCCCccEEEEECCC
Confidence 4668888865
No 245
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.14 E-value=1.3e-06 Score=72.68 Aligned_cols=199 Identities=13% Similarity=0.007 Sum_probs=120.9
Q ss_pred eEEEEEEecccceecCCCcE-EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEE
Q psy2305 60 IIYDYVWYPKTSSIDGFTSY-FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVK 136 (334)
Q Consensus 60 ~v~~~~~~~~~~~~s~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~ 136 (334)
....++| ++.+.. +.+-...+.|..+++..+.....+..... ....+++.+.+..|+.+ . .+.|.
T Consensus 74 ~~~~l~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~ly~~d~~~~~I~ 141 (349)
T 3v64_C 74 NAIALDF-------HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSGTSRIE 141 (349)
T ss_dssp CEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEE-------eccccEEEEEeccCCceEEEecCCCCceEEEeCCCC-----CccEEEEecCCCeEEEEcCCCCeEE
Confidence 3455565 544444 44545667899999876544333322111 45789999876666644 3 68899
Q ss_pred EEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-CeEEEEECCCCCceEee-ccCCCCeEEEEEccCCc
Q psy2305 137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-KIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGI 214 (334)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 214 (334)
+.+++. ..... .....-.....++++|.+..++.+-... +.|..+++... ....+ ...-.....++++|++.
T Consensus 142 ~~~~dG--~~~~~---l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~ 215 (349)
T 3v64_C 142 VANLDG--AHRKV---LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGR 215 (349)
T ss_dssp EEETTS--CSCEE---EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTT
T ss_pred EEcCCC--CceEE---EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCC
Confidence 999874 32221 1222334578999999766245554444 78999997543 33333 22334578999999777
Q ss_pred EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
.|+.+....+.|..+|+.. .....+... .......+++ ..+.++++-...+.|..++..+++
T Consensus 216 ~lY~aD~~~~~I~~~~~dG--~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 216 RMYWVDAKHHVIERANLDG--SHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEEETTTTEEEEEETTS--CSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCCCEEEEEeCCC--CceEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 7777663678899999874 222332211 1234556666 345555555567888888865553
No 246
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.13 E-value=8.3e-07 Score=75.03 Aligned_cols=228 Identities=13% Similarity=-0.002 Sum_probs=134.6
Q ss_pred EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC-CcEEEEeeCCCcEEEEe
Q psy2305 15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF-TSYFLCSSMYAPIHLWD 93 (334)
Q Consensus 15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~iwd 93 (334)
+|+.+. ...|+.+++...... ..+. .......++| ++. +.++++-...+.|..++
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~--------------~~~~--~~~~~~gl~~-------d~~~~~ly~~D~~~~~I~r~~ 144 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYT--------------LLLN--NLENAIALDF-------HHRRELVFWSDVTLDRILRAN 144 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCE--------------EEEC--SCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred eeEeec-CccceeeccCCCcEE--------------EEec--CCCccEEEEE-------ecCCCeEEEEeCCCCcEEEEe
Confidence 344333 345777787765543 1111 1233556666 544 44445545667899999
Q ss_pred CCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCC
Q psy2305 94 SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHP 171 (334)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (334)
+..+.....+..... ....+++.+.+..|+.. . .+.|.+.+++. ..... ...........++++|.+.
T Consensus 145 ~~g~~~~~~~~~~~~-----~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~---l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 145 LNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKV---LLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp TTSCCEEEEECSSCS-----CCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEE---EECSSCSCEEEEEEETTTT
T ss_pred cCCCCcEEEEeCCCC-----CccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEE---eecCCCCCCcEEEEEcCCC
Confidence 876544333332111 45688999876666644 3 67888888873 33221 1222335678999999777
Q ss_pred cEEEEeecC-CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCce
Q psy2305 172 DICALGTYS-KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250 (334)
Q Consensus 172 ~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 250 (334)
.++++-... +.|..+++............-.....|+++|++..|+.+....+.|..+|+.. .....+... .....
T Consensus 215 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~-~~~~P 291 (386)
T 3v65_B 215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQ-GLPHP 291 (386)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS--CSCEEEECS-SCSSE
T ss_pred eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC--CeeEEEEEC-CCCCc
Confidence 244444444 78999997644333333333445789999987777776653678899998874 222333221 12345
Q ss_pred EEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 251 VYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
..+++ ..+.++++-...+.|..++..+++
T Consensus 292 ~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 292 FAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 56666 345555666667889988866653
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.12 E-value=3e-07 Score=73.60 Aligned_cols=220 Identities=10% Similarity=0.042 Sum_probs=129.4
Q ss_pred eeEEEEcCCCcEEEEe-eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE-EE
Q psy2305 4 EEDVDEAPDGTCLLTN-SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY-FL 81 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~-l~ 81 (334)
+.+++|+|++..|+.+ ..++.|.+++..+.... ..+.. .... |..+++++++.. ++
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--------------~~~~~-~~~~-------p~~ia~d~~~~~lyv 95 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--------------TIIRQ-DLGS-------PEGIALDHLGRTIFW 95 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--------------EEECT-TCCC-------EEEEEEETTTTEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--------------EEEEC-CCCC-------ccEEEEEecCCeEEE
Confidence 4588999976655544 46789999998765432 11110 1112 334555776544 44
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
+-...+.|.++++........... . .. ....++++|++..|+.+. .+.|..++++. ..... .....
T Consensus 96 ~d~~~~~I~~~~~~g~~~~~~~~~-~-~~---~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~---~~~~~ 165 (267)
T 1npe_A 96 TDSQLDRIEVAKMDGTQRRVLFDT-G-LV---NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRI---LAQDN 165 (267)
T ss_dssp EETTTTEEEEEETTSCSCEEEECS-S-CS---SEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEE---EECTT
T ss_pred EECCCCEEEEEEcCCCCEEEEEEC-C-CC---CccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEE---EEECC
Confidence 545567899999864332222221 1 11 568999999766666443 35788888763 32221 11122
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~ 237 (334)
......++++|++..++++-...+.|..+|+........+.. ......++.. +..|+.+....+.|..+|..+ ++.
T Consensus 166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~-g~~ 241 (267)
T 1npe_A 166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-SKE 241 (267)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT-TEE
T ss_pred CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCC-CCc
Confidence 345789999998773455555678999999875443333332 2334567654 455665553578999999987 666
Q ss_pred ceeecccccCCceEEEEecCCCc
Q psy2305 238 LHTFPRQVSTNQRVYFDLTSCSN 260 (334)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~s~~~~ 260 (334)
+..+.... ......+++.|++.
T Consensus 242 ~~~i~~g~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 242 MDTFHPHK-QTRLYGITIALSQC 263 (267)
T ss_dssp EEEECCSS-CCCCCCEEEECSCC
T ss_pred eEEEcccc-ccccceeeecCccC
Confidence 66664321 11244566667654
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.12 E-value=4.2e-08 Score=76.67 Aligned_cols=182 Identities=10% Similarity=0.005 Sum_probs=119.8
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
...+.|+ ++.+..+.+.+|.|+++|+.+++... .+ .....---.+.. . .+++.+..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~--------------~~-l~~~~FgeGit~-------~-g~~Ly~lt 112 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW--------------ME-RLGNIFAEGLAS-------D-GERLYQLT 112 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE--------------EE-ECTTCCEEEEEE-------C-SSCEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe--------------EE-CCCCcceeEEEE-------e-CCEEEEEE
Confidence 4577887 45666777788899999999998763 22 111000011221 2 23444445
Q ss_pred eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-cccce
Q psy2305 84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-RKNIV 161 (334)
Q Consensus 84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~v 161 (334)
-.++.+.++|.++.+.+.++..... -+.++ +|++.|+.+. ++.|.++|..+ .+....+.....+ .-..+
T Consensus 113 w~~~~v~V~D~~Tl~~~~ti~~~~e------GwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRERTTRYSGE------GWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELI 183 (268)
T ss_dssp SSSCEEEEEETTTTEEEEEEECSSC------CCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCE
T ss_pred ccCCEEEEEECCcCcEEEEEeCCCc------eeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccc
Confidence 5688999999999999998875321 13443 6788888765 88999999887 5555543221111 11245
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------------CCCeEEEEEccCCcEEEeee
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------------NGGITHLEFSSNGILLFSGA 220 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~ 220 (334)
+.+.|. +|. +.+....+..|.+.|.++++.+..+... ..-.+.|+|+|+++.|++.+
T Consensus 184 NeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 184 NELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 677877 666 6666657889999999999988776421 13568999999877776665
No 249
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.10 E-value=1.6e-08 Score=91.81 Aligned_cols=277 Identities=11% Similarity=-0.041 Sum_probs=148.8
Q ss_pred EEEEcC-CCcEEEEeeCCC-----------eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccccee
Q psy2305 6 DVDEAP-DGTCLLTNSNDN-----------HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSI 73 (334)
Q Consensus 6 ~~~~sp-~~~~l~~~~~d~-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 73 (334)
++++.| +|+.++.|+.+. .+.+||..+++... ...+...+..... ..++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------------~~~~~~~~~~~~~-------~~~~ 250 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------------RTVTVTKHDMFCP-------GISM 250 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------------CEEEECSCCCSSC-------EEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------------CcccCCCCCCccc-------cccC
Confidence 566777 888888887542 68889998877541 0111111111111 1234
Q ss_pred cCCCcEEEEeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--C-----CcEEEEEcCCCCC
Q psy2305 74 DGFTSYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--L-----SEVKIFSTDRPGR 145 (334)
Q Consensus 74 s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-----~~i~i~d~~~~~~ 145 (334)
..++++++.|+. +..+.+||..+++....-..... ..-.+++..++++.++.|+ + ..+.+||..+ .
T Consensus 251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~----R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t-~- 324 (656)
T 1k3i_A 251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS-K- 324 (656)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC----CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT-T-
T ss_pred CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc----ccccceEEecCCeEEEEeCcccCCcccccceEeCCCC-C-
Confidence 678999999884 45899999987765433221111 1224667778899888765 3 5789999985 2
Q ss_pred eeeeeccc-ccccccceEEEEEcCCCCcEEEEeecCC---------eEEEEECCCCCceEeeccCC---------CCeEE
Q psy2305 146 ECVSRNLK-PWFRKNIVSAIAINPVHPDICALGTYSK---------IIGLFSDSDGRPLFFLKGHN---------GGITH 206 (334)
Q Consensus 146 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~---------~~i~~ 206 (334)
.....+.. .......-....+..++. .++.|+.+| .+..||..+..-......+. ..-.+
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a 403 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 403 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred cceeCCCccccccccccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence 22211000 000000000011234444 555555443 56788887765333222111 12234
Q ss_pred EEEcc-CCcEEEeeecCCC-----------eEEEEEccCCCccceeec-ccc-cCCceEEEEecCCCceEEeeecC----
Q psy2305 207 LEFSS-NGILLFSGARKDC-----------EIICWDLRNPGCILHTFP-RQV-STNQRVYFDLTSCSNYLLSGNTN---- 268 (334)
Q Consensus 207 ~~~~~-~~~~l~~~~~~d~-----------~i~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~s~~~~~l~~~~~d---- 268 (334)
+.|.. +++.++.|+ .++ .+.+||..+ ..- .... ... ......++...|++++++.|+.+
T Consensus 404 v~~~~~~~~i~v~GG-~~~~~~~~~~~~~~~v~~yd~~~-~~W-~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 404 VMYDAVKGKILTFGG-SPDYQDSDATTNAHIITLGEPGT-SPN-TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 480 (656)
T ss_dssp EEEETTTTEEEEECC-BSSSSSSBCCCCEEEEECCSTTS-CCE-EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred EeccCCCCeEEEEeC-CCCCCCCCcCCcceEEEcCCCCC-CCe-eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence 44543 677777777 432 577777765 221 1111 111 11112234456899999999864
Q ss_pred -------CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305 269 -------GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 269 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
..+.+||..+.+ |..+..+...........+ .|++ ++++.||.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~----------W~~~~~~~~~R~~hs~a~l--l~dg----~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDT----------FYKQNPNSIVRVYHSISLL--LPDG----RVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTE----------EEECCCCSSCCCTTEEEEE--CTTS----CEEEEECC
T ss_pred cCCCCcccceEEEcCCCCc----------eeecCCCCCccccccHhhc--CCCc----EEEecCCC
Confidence 468899987752 1222222222222234556 7899 99999885
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.10 E-value=2e-07 Score=72.21 Aligned_cols=193 Identities=12% Similarity=0.077 Sum_probs=121.8
Q ss_pred eeEEEEcCCCcEEEEeeCC--CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 4 EEDVDEAPDGTCLLTNSND--NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
...+.|++ +.++.+.+.+ ..|+.+|+.+++... .+......---.+.. . ++++..
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~--------------~~~l~~~~fgeGi~~-------~-~~~ly~ 79 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQ--------------RAEVPPPYFGAGIVA-------W-RDRLIQ 79 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEE--------------EEECCTTCCEEEEEE-------E-TTEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEE--------------EEeCCCCcceeEEEE-------e-CCEEEE
Confidence 56788886 5555555554 489999999998763 221111000011111 1 344455
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc-c
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK-N 159 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-~ 159 (334)
..-.++.+.++|.++.+.+.++..... -+.++ +++..|+.+. ++.|.++|..+ .+....+.+...+.. .
T Consensus 80 ltw~~~~v~v~D~~tl~~~~ti~~~~~------Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLTPRARFRYPGE------GWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLD 150 (243)
T ss_dssp EESSSSEEEEEETTTTEEEEEEECSSC------CCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEECC
T ss_pred EEeeCCEEEEEECCcCcEEEEEeCCCC------ceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcccc
Confidence 556788999999999999998875331 13444 5677777665 88999999987 555544322111111 3
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------------CCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------------NGGITHLEFSSNGILLFSGARKDCEI 226 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~~d~~i 226 (334)
.++.+.+. +|+ +++..-.+..|.+.|.++++.+..+... ..-.+.|+++|+++.|++.+ ..--
T Consensus 151 ~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG--K~wp 226 (243)
T 3mbr_X 151 NLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG--KRWP 226 (243)
T ss_dssp CEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE--TTCS
T ss_pred cceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC--CCCC
Confidence 45667766 665 5655556889999999999988776411 13568999999888777776 2333
Q ss_pred EEEEcc
Q psy2305 227 ICWDLR 232 (334)
Q Consensus 227 ~iwd~~ 232 (334)
++|.++
T Consensus 227 ~~~~v~ 232 (243)
T 3mbr_X 227 MLYEIR 232 (243)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 444443
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.10 E-value=2.1e-08 Score=78.33 Aligned_cols=179 Identities=9% Similarity=0.004 Sum_probs=119.0
Q ss_pred ceecCCCcEEEEeeCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCe
Q psy2305 71 SSIDGFTSYFLCSSMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRE 146 (334)
Q Consensus 71 ~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~ 146 (334)
+.|+ ++.++.+.+.+| .|+++|+++++.+..+.... ........+++..|.... ++.+.+||..+ .+.
T Consensus 48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~------~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~ 119 (262)
T 3nol_A 48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK------RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQ 119 (262)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT------TCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCE
T ss_pred EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC------ccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcE
Confidence 4456 667777777665 89999999999988876533 333333344466666554 89999999987 565
Q ss_pred eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----CCeEEEEEccCCcEEEeeec
Q psy2305 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----GGITHLEFSSNGILLFSGAR 221 (334)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~ 221 (334)
+..++. .+ ....++++++ .|+....++.|.++|..+.+.+.++.-.. ..++.+.|. +|+..+..-
T Consensus 120 ~~ti~~--~~-----eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w- 189 (262)
T 3nol_A 120 VRSFNY--DG-----EGWGLTHNDQ-YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW- 189 (262)
T ss_dssp EEEEEC--SS-----CCCCEEECSS-CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-
T ss_pred EEEEEC--CC-----CceEEecCCC-EEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc-
Confidence 554321 11 1223345676 55555567899999999998887765321 345568886 776444443
Q ss_pred CCCeEEEEEccCCCccceeeccc----------ccCCceEEEEecCCCceEEeeecC
Q psy2305 222 KDCEIICWDLRNPGCILHTFPRQ----------VSTNQRVYFDLTSCSNYLLSGNTN 268 (334)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~~~~d 268 (334)
.++.|.+.|.++ ++.+..+... ........++|+|+++.|++.+..
T Consensus 190 ~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 688999999988 7766665532 112234679999988877776653
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=3.4e-08 Score=89.64 Aligned_cols=271 Identities=13% Similarity=0.125 Sum_probs=158.2
Q ss_pred CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC------C
Q psy2305 13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM------Y 86 (334)
Q Consensus 13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~------d 86 (334)
+..+++++.|+.|..+|..+++............ ...+. ..| .+ .++. ++++.. +
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-----------~~~~~---~~P---~v-~~~~-v~vg~~~~~~~~~ 177 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK-----------PYSIT---GAP---RV-VKGK-VIIGNGGAEYGVR 177 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS-----------SCBCC---SCC---EE-ETTE-EEECCBCTTTCCB
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC-----------cceec---CCC---EE-ECCE-EEEeCCCCCcCCC
Confidence 4568888889999999999998763222110000 00000 000 00 1443 444432 5
Q ss_pred CcEEEEeCCCCeeeEEEcCcccccc--------------------------ccceeEEEEcCCCCEEEEee-CC------
Q psy2305 87 APIHLWDSVGGEIKATYRPYNQVDE--------------------------VTHAYSLAFSLDGNKIYAGF-LS------ 133 (334)
Q Consensus 87 ~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------~~~v~~~~~~~~~~~l~~~~-d~------ 133 (334)
+.|..+|.++|+.+..+........ ......+++.|+...++.+. ++
T Consensus 178 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~ 257 (668)
T 1kv9_A 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE 257 (668)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred CEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccC
Confidence 8899999999999887753211000 00112478888888887765 44
Q ss_pred -------------cEEEEEcCCCCCeeeeecccccccc-------cceEEEEEcCCCC--cEEEEeecCCeEEEEECCCC
Q psy2305 134 -------------EVKIFSTDRPGRECVSRNLKPWFRK-------NIVSAIAINPVHP--DICALGTYSKIIGLFSDSDG 191 (334)
Q Consensus 134 -------------~i~i~d~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~ 191 (334)
.|..+|..+ ++...... ...|. .+.....+..+|+ ..++.++.+|.++++|.+++
T Consensus 258 ~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~--~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 334 (668)
T 1kv9_A 258 VRSPGGGDNLYLSSILAIRPDT-GKLAWHYQ--VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG 334 (668)
T ss_dssp HHSTTCCCCTTTTEEEEECTTT-CCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred CCCCCCCCceeeeeEEEEcCCC-CceeeEee--cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC
Confidence 488999987 66655321 12221 2222223333553 25888999999999999999
Q ss_pred CceEeeccCC------------CCe------------------------EEEEEccCCcEEEeee---------------
Q psy2305 192 RPLFFLKGHN------------GGI------------------------THLEFSSNGILLFSGA--------------- 220 (334)
Q Consensus 192 ~~~~~~~~~~------------~~i------------------------~~~~~~~~~~~l~~~~--------------- 220 (334)
+.+...+... .++ ..++++|+...+++..
T Consensus 335 ~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 335 KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCC
T ss_pred CEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccc
Confidence 8874332111 000 1267777766655411
Q ss_pred --------------------cCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 221 --------------------RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 221 --------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
..++.|..||+.+ ++.+.+..... ......+...+.++++++.|+.++.||.+++
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG- 489 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG- 489 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcC-
Confidence 0247899999988 77666654321 1111223346778888999999999999998
Q ss_pred CCCCCCccccccccceeccccccc-ceeeeccCCCcccceeeEEeee
Q psy2305 281 LPSSPYEESVQEPLYKFSAHQDCT-NGVRWKHHKFERDLLVADATCS 326 (334)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~s~~~~~~~~~l~t~~ 326 (334)
+.+..+....+.. .-+.+ ..++. .+++.++
T Consensus 490 -----------~~l~~~~~~~~~~~~p~~~--~~~G~---~yva~~~ 520 (668)
T 1kv9_A 490 -----------EALWQFEAQSGIVAAPMTF--ELAGR---QYVAIMA 520 (668)
T ss_dssp -----------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEE
T ss_pred -----------hhheEecCCCCcccCceEE--EECCE---EEEEEEe
Confidence 5666665443221 33455 55661 3555554
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.06 E-value=1.9e-06 Score=80.03 Aligned_cols=275 Identities=13% Similarity=0.101 Sum_probs=165.3
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
|.++...++|.+.+ ++.++-|..|+..+++... .........|.++.. .+++.+.+ +
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~--------------~~~~~~~~~i~~i~~-------d~~g~lwi-g 231 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK--------------VIPILGTKQIQAILQ-------QSPTRIWV-A 231 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE--------------CC----CCCEEEEEE-------EETTEEEE-E
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE--------------ecCCCCCCeeEEEEE-------cCCCCEEE-E
Confidence 77888888886554 5555458889987766531 111112344655544 45666554 4
Q ss_pred eCCCcEEEEeCCCCeeeEEEcCcc--ccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc----cccc
Q psy2305 84 SMYAPIHLWDSVGGEIKATYRPYN--QVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK----PWFR 157 (334)
Q Consensus 84 ~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~ 157 (334)
+.++-+..||..+++......... ..-....|.++...++|.+.+...+ -|.+||..+ ......... ..-.
T Consensus 232 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~--~~~~~~~~~~~~~~~l~ 308 (795)
T 4a2l_A 232 TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT--DSFASYSSNPVENGSLS 308 (795)
T ss_dssp EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT--TEEEEECCCTTSTTSCS
T ss_pred ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC--CeEEEEecCCCCCCCCC
Confidence 444448899987776543322110 0111127999999999886665445 688898774 222221100 1112
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-------CCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-------HNGGITHLEFSSNGILLFSGARKDCEIICWD 230 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd 230 (334)
...|.++...++|. |..|+.++.|..|+..++... .+.. ....|.++...++|.+ ..|+ .++-|..||
T Consensus 309 ~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt-~~~Gl~~~~ 383 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGT-NDGGLNLYN 383 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCE-EEEE-SSSCEEEEC
T ss_pred CCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCE-EEEE-CCCCeEEEc
Confidence 35799999999986 666888888999987654332 2211 2356899999888864 4566 677799998
Q ss_pred ccCCCccceeeccc-------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec-----
Q psy2305 231 LRNPGCILHTFPRQ-------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS----- 298 (334)
Q Consensus 231 ~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----- 298 (334)
..+ +. ...+... .....+.++...++|+.|..|+.++-|..||..+++. ..+.
T Consensus 384 ~~~-~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-------------~~~~~~~~~ 448 (795)
T 4a2l_A 384 PIT-QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-------------ENFNQRNSQ 448 (795)
T ss_dssp TTT-CC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-------------EEECTTTSC
T ss_pred CCC-Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-------------EEeecCCCC
Confidence 875 32 2222211 1235677888788888566677767799999887631 1111
Q ss_pred ccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305 299 AHQDCTNGVRWKHHKFERDLLVADATCSGQITN 331 (334)
Q Consensus 299 ~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i 331 (334)
.....|.++.. .+++ .+.+... +|..
T Consensus 449 l~~~~v~~i~~--d~~g----~lwigt~-~Gl~ 474 (795)
T 4a2l_A 449 LVNENVYAILP--DGEG----NLWLGTL-SALV 474 (795)
T ss_dssp CSCSCEEEEEE--CSSS----CEEEEES-SCEE
T ss_pred cCCCeeEEEEE--CCCC----CEEEEec-Ccee
Confidence 12346788888 7777 6544433 5543
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.06 E-value=3.3e-06 Score=78.51 Aligned_cols=280 Identities=11% Similarity=0.076 Sum_probs=165.7
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
+.|.++...++|.+ -.|+.++-|..|+..++......... . ... ......|.++.. +++++.|
T Consensus 357 ~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~v~~i~~-------d~~g~~l 420 (795)
T 4a2l_A 357 NVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQE-D-------ESARGIGSNNIKAVYV-------DEKKSLV 420 (795)
T ss_dssp SSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC--------------CCSCSCEEEEEE-------ETTTTEE
T ss_pred CeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCC-C-------CcccCCCCccEEEEEE-------cCCCCEE
Confidence 35889999888874 45677766999998876653100000 0 000 011245666655 5677746
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc---cccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK---PWFR 157 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~ 157 (334)
..|+.++-|..+|..+++... +...........|.++...++|.+.+... +-+..||..+ + ........ ....
T Consensus 421 Wigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~-~-~~~~~~~~~~~~~~~ 496 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQ-R-SFTTIEKEKDGTPVV 496 (795)
T ss_dssp EEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTT-T-EEEECCBCTTCCBCC
T ss_pred EEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCC-C-eEEEccccccccccC
Confidence 667776679999988776543 32111101112789999999888766555 5588899874 2 22221100 0112
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-------cCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-------GHNGGITHLEFSSNGILLFSGARKDCEIICWD 230 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd 230 (334)
...|.++...++|. +..|+. +.|..||..+++. .+. .....|.++...++|++.+ ++ .. -+..||
T Consensus 497 ~~~i~~i~~d~~g~--lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT-~~-Gl~~~d 568 (795)
T 4a2l_A 497 SKQITTLFRDSHKR--LWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWV-GT-RE-GFYCFN 568 (795)
T ss_dssp CCCEEEEEECTTCC--EEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEE-EE-SS-CEEEEE
T ss_pred CceEEEEEECCCCC--EEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEE-Ee-CC-CceeEC
Confidence 35789999999987 444555 5688899876654 221 1345789999999887555 44 34 578888
Q ss_pred ccCCCccceeeccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc----cc
Q psy2305 231 LRNPGCILHTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD----CT 304 (334)
Q Consensus 231 ~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i 304 (334)
..+ .. ...+... .....+.++...++|++.+++ . +-|..|+..+. ....+....+ .+
T Consensus 569 ~~~-~~-~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~-------------~~~~~~~~dGl~~~~f 631 (795)
T 4a2l_A 569 EKD-KQ-IKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETE-------------KFRNFTESDGLQSNQF 631 (795)
T ss_dssp TTT-TE-EEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTT-------------EEEEECGGGTCSCSCE
T ss_pred CCC-Cc-EEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCC-------------cEEEcCCcCCCccccC
Confidence 765 32 3333221 123457778788888776655 3 45788888764 2223322211 12
Q ss_pred --ceeeeccCCCcccceeeEEeeecceeeee
Q psy2305 305 --NGVRWKHHKFERDLLVADATCSGQITNVK 333 (334)
Q Consensus 305 --~~~~~~~s~~~~~~~~~l~t~~~d~~i~~ 333 (334)
.++.. .++| . |..|+.+|.+.+
T Consensus 632 ~~~~~~~--~~~G----~-l~~g~~~Gl~~~ 655 (795)
T 4a2l_A 632 NTASYCR--TSVG----Q-MYFGGINGITTF 655 (795)
T ss_dssp EEEEEEE--CTTS----C-EEEEETTEEEEE
T ss_pred ccCceeE--CCCC----e-EEEecCCceEEE
Confidence 35556 7777 4 566777787664
No 255
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=5e-09 Score=86.67 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=143.3
Q ss_pred EEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC
Q psy2305 7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY 86 (334)
Q Consensus 7 ~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d 86 (334)
+....+| .|..++.++.|..|| .+++... ... .....+.+ +...+++. |..++.+
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~--------------~~~-~~~~~~~~-------~~~~~~g~-l~v~t~~ 79 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKW--------------FFK-SGEIIECR-------PSIGKDGT-IYFGSDK 79 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEE--------------SSC-GGGEEEEC-------CEETTTTE-ECCSSCE
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEE--------------EEe-cCCCcccc-------eEEecCCc-EEEecCc
Confidence 3444455 466777788899999 7776541 111 11122222 33355665 4445444
Q ss_pred CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEE
Q psy2305 87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIA 165 (334)
Q Consensus 87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (334)
|..+|. +++....+..... ......+. ++ .|..+. ++.+..+|.. ++.... .......+.++.
T Consensus 80 --l~~~d~-~g~~~~~~~~~~~-----~~~~~~~~-~~-~l~v~t~~~~l~~~d~~--g~~~~~----~~~~~~~~~~~~ 143 (330)
T 3hxj_A 80 --VYAINP-DGTEKWRFDTKKA-----IVSDFTIF-ED-ILYVTSMDGHLYAINTD--GTEKWR----FKTKKAIYATPI 143 (330)
T ss_dssp --EEEECC-CGGGGGGSCC----------CCEEEE-TT-EEEEECTTSEEEEECTT--SCEEEE----EECSSCCCSCCE
T ss_pred --EEEECC-CCcEEEEEECCCC-----cccCceEE-CC-EEEEEecCCEEEEEcCC--CCEEEE----EcCCCceeeeeE
Confidence 888886 6655433322111 11222233 44 455565 8899999987 444432 222334456677
Q ss_pred EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305 166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245 (334)
Q Consensus 166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 245 (334)
..+++. +..++.++.|..+|.. ++....+......+.++...+++..++ + . +.+..+| .+ +.....+...
T Consensus 144 ~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~--t-~~l~~~d-~~-g~~~~~~~~~- 213 (330)
T 3hxj_A 144 VSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-G--S-DKVYAIN-PD-GTEKWNFYAG- 213 (330)
T ss_dssp ECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-E--S-SSEEEEC-TT-SCEEEEECCS-
T ss_pred EcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-E--e-CEEEEEC-CC-CcEEEEEccC-
Confidence 777775 5567788999999988 877766665556677777877887544 3 2 7788898 44 5544444432
Q ss_pred cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC 325 (334)
Q Consensus 246 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~ 325 (334)
...+.++...++|.+ ..++.++.|..+|.. + +.+..+......+..+.. .+++ . |..+
T Consensus 214 -~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~-g------------~~~~~~~~~~~~~~~~~~--~~~g----~-l~v~ 271 (330)
T 3hxj_A 214 -YWTVTRPAISEDGTI-YVTSLDGHLYAINPD-G------------TEKWRFKTGKRIESSPVI--GNTD----T-IYFG 271 (330)
T ss_dssp -SCCCSCCEECTTSCE-EEEETTTEEEEECTT-S------------CEEEEEECSSCCCSCCEE--CTTS----C-EEEE
T ss_pred -CcceeceEECCCCeE-EEEcCCCeEEEECCC-C------------CEeEEeeCCCCccccceE--cCCC----e-EEEe
Confidence 233445566777754 445667788888753 3 333344433344555666 6566 4 4455
Q ss_pred ecce
Q psy2305 326 SGQI 329 (334)
Q Consensus 326 ~~d~ 329 (334)
+.+|
T Consensus 272 t~~g 275 (330)
T 3hxj_A 272 SYDG 275 (330)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 5553
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.05 E-value=1.1e-06 Score=71.79 Aligned_cols=230 Identities=8% Similarity=0.000 Sum_probs=132.0
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
...++|+|+|+++++-..++.|..|+....... .+. ...... .++++++++++++.
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------------~~~--~~~~p~-------gia~~~dG~l~vad 89 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------------HAT--VEGKVS-------GLAFTSNGDLVATG 89 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---------------EEE--CSSEEE-------EEEECTTSCEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCceEE---------------EEe--CCCCce-------eEEEcCCCcEEEEe
Confidence 568899999987776667889999987754221 111 122333 45558899866655
Q ss_pred eCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCC-eeee-ecc----cc
Q psy2305 84 SMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGR-ECVS-RNL----KP 154 (334)
Q Consensus 84 ~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~-~~~~-~~~----~~ 154 (334)
.... .|..++..+++......... .. ....++..+++..+++.. ++.|..+|... +. .+.. ... ..
T Consensus 90 ~~~~~~~v~~~d~~~g~~~~~~~~~~-~~---~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~ 164 (306)
T 2p4o_A 90 WNADSIPVVSLVKSDGTVETLLTLPD-AI---FLNGITPLSDTQYLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNS 164 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTT-CS---CEEEEEESSSSEEEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSST
T ss_pred ccCCcceEEEEcCCCCeEEEEEeCCC-cc---ccCcccccCCCcEEEEECCCCeEEEEeCCC-CcEeEEEECCccccccc
Confidence 4322 46677877777544332211 11 334555566555455554 78888888763 21 1110 000 00
Q ss_pred cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCc--eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305 155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRP--LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~ 231 (334)
...-.....+ +|+++.++++-...+.|..|++.. ++. ...+.. ......++++++|+++++.. ..+.|.++|.
T Consensus 165 ~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~ 240 (306)
T 2p4o_A 165 ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAP 240 (306)
T ss_dssp TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECT
T ss_pred cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECC
Confidence 1111234555 788873445555678999999864 321 122211 12345689999998766665 6888999987
Q ss_pred cCCCccceeecccccCCceEEEEec---CCCceEEeeecC
Q psy2305 232 RNPGCILHTFPRQVSTNQRVYFDLT---SCSNYLLSGNTN 268 (334)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~~~~~d 268 (334)
. ++...............+++|. |+++.|+.++..
T Consensus 241 ~--G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 241 D--RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp T--CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C--CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 5 4432211111123457788998 887777666543
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.04 E-value=8.4e-08 Score=85.32 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=151.2
Q ss_pred CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC------C
Q psy2305 13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM------Y 86 (334)
Q Consensus 13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~------d 86 (334)
+..+++++.|+.|..+|..+++........... ....+. -.| .+ .++. +++++. +
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-----------~~~~~~---~~P---~v-~~g~-v~vg~~~~~~~~~ 175 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPK-----------VGSTLT---QAP---FV-AKDT-VLMGCSGAELGVR 175 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGG-----------GTCBCC---SCC---EE-ETTE-EEEECBCGGGTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC-----------ccceec---cCC---EE-ECCE-EEEEecCCccCCC
Confidence 456788888999999999999876321110000 000110 000 00 1444 444443 7
Q ss_pred CcEEEEeCCCCeeeEEEcCcccccc--------------------------------ccce-eEEEEcCCCCEEEEee-C
Q psy2305 87 APIHLWDSVGGEIKATYRPYNQVDE--------------------------------VTHA-YSLAFSLDGNKIYAGF-L 132 (334)
Q Consensus 87 ~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------~~~v-~~~~~~~~~~~l~~~~-d 132 (334)
+.|..+|.++|+.+..+........ ...+ ..+++.++...++.+. +
T Consensus 176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~ 255 (571)
T 2ad6_A 176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN 255 (571)
T ss_dssp CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence 8999999999999887764321100 0000 2356677666666543 2
Q ss_pred ----------------CcEEEEEcCCCCCeeeeeccccccc--------ccceEEEEEcCCCC--cEEEEeecCCeEEEE
Q psy2305 133 ----------------SEVKIFSTDRPGRECVSRNLKPWFR--------KNIVSAIAINPVHP--DICALGTYSKIIGLF 186 (334)
Q Consensus 133 ----------------~~i~i~d~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~ 186 (334)
+.|..+|..+ ++...... ...| ..++. +...++|+ ..++.++.+|.++++
T Consensus 256 ~~~~~~~~~~gd~~y~~~v~Ald~~t-G~~~W~~~--~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~l 331 (571)
T 2ad6_A 256 PAPWNETMRPGDNKWTMTIWGRDLDT-GMAKWGYQ--KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTL 331 (571)
T ss_dssp CSCSCGGGSCSCCTTTTEEEEEETTT-CCEEEEEE--SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEE
T ss_pred CccccCCccCCCceeEEEEEEEecCC-CcEEEEec--CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEE
Confidence 2588999987 66554321 1222 12221 22334663 267788899999999
Q ss_pred ECCCCCceEeeccCC-------------CCe--------------------------EEEEEccCCcEEEeeec------
Q psy2305 187 SDSDGRPLFFLKGHN-------------GGI--------------------------THLEFSSNGILLFSGAR------ 221 (334)
Q Consensus 187 d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~~------ 221 (334)
|.++++.+....... .++ ..++++|+..+|++.+.
T Consensus 332 D~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~ 411 (571)
T 2ad6_A 332 NRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDW 411 (571)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccc
Confidence 999998876653211 111 23578887777766531
Q ss_pred ------------------------------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcE
Q psy2305 222 ------------------------------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDL 271 (334)
Q Consensus 222 ------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 271 (334)
.++.+..||+.+ ++.+.++.... ......+...+..++.++.||.|
T Consensus 412 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t-G~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l 487 (571)
T 2ad6_A 412 EPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYL 487 (571)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT-CCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEE
T ss_pred cccccccccCCccccccceeccCccccCCCCCCeEEEEECCC-CCEEEEecCCC---CccceeEEECCCEEEEEcCCCeE
Confidence 247889999887 66666554321 11111112345667778899999
Q ss_pred EEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccCCCc
Q psy2305 272 SIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHHKFE 315 (334)
Q Consensus 272 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s~~~ 315 (334)
+.+|.+++ +.+..+..... .-.-+.+ ..++
T Consensus 488 ~a~D~~tG------------~~lw~~~~~~~~~~~p~~~--~~~G 518 (571)
T 2ad6_A 488 KALDNKDG------------KELWNFKMPSGGIGSPMTY--SFKG 518 (571)
T ss_dssp EEEETTTC------------CEEEEEECSSCCCSCCEEE--EETT
T ss_pred EEEECCCC------------CEEEEEeCCCCcEeeeEEE--EECC
Confidence 99999998 56655553322 1223455 5777
No 258
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.02 E-value=3.9e-07 Score=83.98 Aligned_cols=194 Identities=9% Similarity=0.021 Sum_probs=109.1
Q ss_pred ceeEEEEc-CCCcEEEEeeC-C----CeEEEEECCCC-CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305 3 IEEDVDEA-PDGTCLLTNSN-D----NHLRTFDLPSE-LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75 (334)
Q Consensus 3 ~V~~~~~s-p~~~~l~~~~~-d----~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~ 75 (334)
.+...+|| |||++||.+.. + .+|+++|+.++ +... ..+. .. ...++|+|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------~~~~----~~-------~~~~~Wsp 230 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------DKVS----GT-------NGEIVWGP 230 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------------CCEE----EE-------CSCCEECS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------------cccc----Cc-------eeeEEEec
Confidence 36778999 99998885532 2 35999999988 5320 0111 11 12355688
Q ss_pred CCcEEEEeeCC-----CcEEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEEcCCCC
Q psy2305 76 FTSYFLCSSMY-----APIHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFSTDRPG 144 (334)
Q Consensus 76 ~~~~l~~~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~ 144 (334)
|++.|+....+ ..|.++++.++.. ...+..... . ....+.|+|||++|+... ...|.++|+..+.
T Consensus 231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~-~---~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP-L---FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT-T---CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC-c---eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 99888877655 2578888877642 223322111 1 456889999999988442 3568888887532
Q ss_pred Cee--eeecccccccccceEEEEEcCCCCcEEEEeecC----CeEEEEECCCCCceEe-eccCCC--CeEEEEEccCCcE
Q psy2305 145 REC--VSRNLKPWFRKNIVSAIAINPVHPDICALGTYS----KIIGLFSDSDGRPLFF-LKGHNG--GITHLEFSSNGIL 215 (334)
Q Consensus 145 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~ 215 (334)
... .. ...........+.|+..+. +++....+ ..|..+|+.++..... +..+.. .+..+.+. +..
T Consensus 307 ~~~~~~~---l~~~~~~~~~s~~~~~g~~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~ 380 (751)
T 2xe4_A 307 AHNTLEI---VRPREKGVRYDVQMHGTSH-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNY 380 (751)
T ss_dssp TCCCEEE---SSCCCTTCCEEEEEETTTE-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSE
T ss_pred CCceeEE---eecCCCCceEEEeeeeCCE-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCE
Confidence 122 21 2233344555666554443 44544433 3677788765322222 323333 34445544 455
Q ss_pred EEeeecCCCeEEEEE
Q psy2305 216 LFSGARKDCEIICWD 230 (334)
Q Consensus 216 l~~~~~~d~~i~iwd 230 (334)
|+...+.++..++|-
T Consensus 381 lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 381 LVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEEeCCEEEEEE
Confidence 544433677655443
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.99 E-value=1.1e-07 Score=74.30 Aligned_cols=181 Identities=8% Similarity=-0.062 Sum_probs=116.8
Q ss_pred ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC
Q psy2305 114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR 192 (334)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 192 (334)
....+.|+. +.++.+.+ +|.|+.+|+.+ ++..... ......-..+++. ++.+....-.++.+.+||.++.+
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~T-gkv~~~~----l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLES-AQPVWME----RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSC-SSCSEEE----ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCC-CcEEeEE----CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc
Confidence 456888873 33333444 78899999998 6666542 1111112235554 44255556678999999999999
Q ss_pred ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCC---ceEEEEecCCCceEEeeecCC
Q psy2305 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN---QRVYFDLTSCSNYLLSGNTNG 269 (334)
Q Consensus 193 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~l~~~~~dg 269 (334)
.+.++..... -..+ .++++.|+.+. .++.|.++|..+ .+.+..+.-..... .+..+.|. +|+..+....+.
T Consensus 128 ~~~ti~~~~e-GwGL--t~Dg~~L~vSd-Gs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 128 RERTTRYSGE-GWGL--CYWNGKLVRSD-GGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp EEEEEECSSC-CCCE--EEETTEEEEEC-SSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred EEEEEeCCCc-eeEE--ecCCCEEEEEC-CCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 9998874322 2334 46788888888 799999999988 56666555432222 23456665 777666665688
Q ss_pred cEEEEeCCCCCCCCCCCccccccccceecc-------------cccccceeeeccCCCcccceeeEEeee
Q psy2305 270 DLSIWNVNTSNLPSSPYEESVQEPLYKFSA-------------HQDCTNGVRWKHHKFERDLLVADATCS 326 (334)
Q Consensus 270 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~s~~~~~~~~~l~t~~ 326 (334)
.|.+.|.++++ .+..+.. ..+..+.++| +|++ +.|...+
T Consensus 202 ~I~vIDp~TG~------------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~--dp~~----~rlfVTG 253 (268)
T 3nok_A 202 DVLEIDPATGT------------VVGVIDASALTRAVAGQVTNPEAVLNGIAV--EPGS----GRIFMTG 253 (268)
T ss_dssp EEEEECTTTCB------------EEEEEECHHHHHHHTTTCCCTTCCEEEEEE--CTTT----CCEEEEE
T ss_pred eEEEEeCCCCc------------EEEEEECCCCcccccccccCcCCceEEEEE--cCCC----CEEEEeC
Confidence 99999999983 3333321 1235688999 9987 5444444
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.98 E-value=7.1e-06 Score=67.33 Aligned_cols=228 Identities=13% Similarity=-0.025 Sum_probs=134.0
Q ss_pred EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEe
Q psy2305 15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWD 93 (334)
Q Consensus 15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd 93 (334)
+|+.+.. ..|+..++.+.+.. ..+. ......+++| ++.++ ++++-...+.|..++
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~--------------~~~~--~~~~p~g~~~-------d~~~~~ly~~D~~~~~I~~~~ 58 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYT--------------SLIP--NLRNVVALDT-------EVASNRIYWSDLSQRMICSTQ 58 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCE--------------EEEC--SCSSEEEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEECC-CeEEEEECCCcceE--------------ehhc--CCCceEEEEE-------EeCCCEEEEEECCCCcEEEEE
Confidence 4444443 45889999887654 1221 1233455555 65544 445555568899999
Q ss_pred CCC---Cee-eEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305 94 SVG---GEI-KATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN 167 (334)
Q Consensus 94 ~~~---~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (334)
+.. +.. ...+..... .+..+++.+.+..|+.+ . .+.|.+++++ +..... ...........++++
T Consensus 59 ~~g~~~~~~~~~~~~~~~~-----~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~---~~~~~~~~P~~iavd 128 (316)
T 1ijq_A 59 LDRAHGVSSYDTVISRDIQ-----APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKT---LFRENGSKPRAIVVD 128 (316)
T ss_dssp C--------CEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEE---EEECTTCCEEEEEEE
T ss_pred CCCCCCCcccEEEEeCCCC-----CcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEE---EEECCCCCcceEEeC
Confidence 865 122 222221111 45789999766666544 3 7899999987 433322 122233467899999
Q ss_pred CCCCcEEEEeecC-CeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc-c
Q psy2305 168 PVHPDICALGTYS-KIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR-Q 244 (334)
Q Consensus 168 ~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~ 244 (334)
|.+..++++.... +.|..+++. ++....+ ...-.....++++|++..|+.+....+.|..+|+.. .....+.. .
T Consensus 129 p~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~ 205 (316)
T 1ijq_A 129 PVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDE 205 (316)
T ss_dssp TTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECT
T ss_pred CCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecC
Confidence 9766244443333 789988875 4433333 223346789999998877777664667899999874 33333322 1
Q ss_pred ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 245 VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 245 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
........+++. .+.++++-...+.|..++..+++
T Consensus 206 ~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 206 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 112334566664 35555666667889999886664
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=6.5e-07 Score=79.72 Aligned_cols=277 Identities=13% Similarity=0.074 Sum_probs=156.8
Q ss_pred EEEcCCCcE----EEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 7 VDEAPDGTC----LLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 7 ~~~sp~~~~----l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
++++|.+.. |++++.|+.|.-+|..+++..-........ ....+.+ .| .+ .++. +++
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-----------~~~~~~s---sP---~v-~~g~-V~v 171 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK-----------VGSTLTI---AP---YV-VKDK-VII 171 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG-----------GTCBCCS---CC---EE-ETTE-EEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC-----------ccceeec---CC---EE-ECCE-EEE
Confidence 455444444 888888999999999999876321110000 0001100 00 01 1444 444
Q ss_pred ee------CCCcEEEEeCCCCeeeEEEcCcccccc--------------------------------ccce-eEEEEcCC
Q psy2305 83 SS------MYAPIHLWDSVGGEIKATYRPYNQVDE--------------------------------VTHA-YSLAFSLD 123 (334)
Q Consensus 83 ~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------~~~v-~~~~~~~~ 123 (334)
++ .++.|.-+|.++|+.+..+........ ...+ ..+++.++
T Consensus 172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~ 251 (599)
T 1w6s_A 172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG 251 (599)
T ss_dssp CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence 44 378999999999999877764321100 0001 13566677
Q ss_pred CCEEEEee-C----------------CcEEEEEcCCCCCeeeeecccccccc--------cceEEEEEc-CCCC--cEEE
Q psy2305 124 GNKIYAGF-L----------------SEVKIFSTDRPGRECVSRNLKPWFRK--------NIVSAIAIN-PVHP--DICA 175 (334)
Q Consensus 124 ~~~l~~~~-d----------------~~i~i~d~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~--~~l~ 175 (334)
...++.+. + +.|..+|.++ ++..-.. ....|. .++. +... .+|+ ..++
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T-G~~~W~~--q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~ 327 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT-GEAKFGY--QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLT 327 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT-CCEEEEE--ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEE
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCC-CceeeEe--ecCCCccccccCCCccEE-EeccccCCcEEEEEE
Confidence 77777654 4 3788999987 6655432 122221 1222 2222 4662 2677
Q ss_pred EeecCCeEEEEECCCCCceEeeccCC-------------CCe--------------------------EEEEEccCCcEE
Q psy2305 176 LGTYSKIIGLFSDSDGRPLFFLKGHN-------------GGI--------------------------THLEFSSNGILL 216 (334)
Q Consensus 176 ~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l 216 (334)
.++.+|.++++|.++++.+....... .++ ..++++|+..++
T Consensus 328 ~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~ 407 (599)
T 1w6s_A 328 HPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELF 407 (599)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred EECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEE
Confidence 78899999999999998876553111 111 235677766655
Q ss_pred Eeeec--------------------------------------CCCeEEEEEccCCCccceeecccccCCceEEEEecCC
Q psy2305 217 FSGAR--------------------------------------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC 258 (334)
Q Consensus 217 ~~~~~--------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (334)
++... ..|.+..||+.+ ++.+.+..... ....-.+...
T Consensus 408 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~t-G~~~W~~~~~~---~~~~g~~~ta 483 (599)
T 1w6s_A 408 FMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAIT-GDYKWEKMERF---AVWGGTMATA 483 (599)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTT-CCEEEEEEESS---CCCSBCEEET
T ss_pred EEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCC-CCEEeEecCCC---CccCcceEec
Confidence 54320 136788888877 66555553211 1110011234
Q ss_pred CceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc-cceeeeccCCCcccceeeEEeeec
Q psy2305 259 SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC-TNGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 259 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
+.+++.++.|+.++.||.+++ +.+.++....+. ..-+.| ..+|. +|+++.+.
T Consensus 484 gg~vf~gt~dg~l~A~D~~tG------------~~lW~~~l~~g~~~~P~~y--~~~G~---qyv~~~~G 536 (599)
T 1w6s_A 484 GDLVFYGTLDGYLKARDSDTG------------DLLWKFKIPSGAIGYPMTY--THKGT---QYVAIYYG 536 (599)
T ss_dssp TTEEEEECTTSEEEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCC------------CEEEEeeCCCCcEeccEEE--EeCCE---EEEEEEcc
Confidence 667777899999999999999 566555443332 233666 67772 45555443
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=9e-07 Score=75.90 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=98.6
Q ss_pred ecccceecC-CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CC----cEEEEE
Q psy2305 67 YPKTSSIDG-FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LS----EVKIFS 139 (334)
Q Consensus 67 ~~~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~----~i~i~d 139 (334)
.|..++++| ++..|.++...+.|+.+|+.++......... . ....++|++++++|+.+. ++ .+..++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~-~-----~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL-S-----KVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC-S-----CEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC-C-----CcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 467788897 4555666655588999999877655444321 1 678999999999666553 22 233344
Q ss_pred cCCCCCeeeeecccccccccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCcEEE
Q psy2305 140 TDRPGRECVSRNLKPWFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLF 217 (334)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~ 217 (334)
.. +...... .+. .......++++| ++. ++++-..++.|..++...+....... +.......++|+|+|++|+
T Consensus 212 ~~--g~~~~~~--~l~-~~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 212 RE--SGFKVIT--ELT-KGQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GG--GTSCSEE--EEE-ECSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred CC--Cceeeee--eec-cCCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence 33 2221100 111 123456789999 665 66666677899999987654322222 1223467899999999666
Q ss_pred eeecCCCeEEEEEccC
Q psy2305 218 SGARKDCEIICWDLRN 233 (334)
Q Consensus 218 ~~~~~d~~i~iwd~~~ 233 (334)
.+....+.|..++...
T Consensus 286 v~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEETTTTEEEEEEEET
T ss_pred EEECCCCEEEEEeCCc
Confidence 6653678899988764
No 263
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=2.8e-07 Score=83.63 Aligned_cols=206 Identities=14% Similarity=0.110 Sum_probs=120.8
Q ss_pred CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305 13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW 92 (334)
Q Consensus 13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw 92 (334)
+..|++++.++.|.-+|..+++..-............ . .....+ ...+++ .+..+++++.|+.|..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~--~---~~~~~~------~~~~~~--~~~~v~v~~~dg~l~al 132 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKAR--T---SCCDAV------NRGVAL--WGDKVYVGTLDGRLIAL 132 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGG--G---CTTCSC------CCCCEE--EBTEEEEECTTSEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccc--c---ccccCC------ccceEE--ECCEEEEEcCCCEEEEE
Confidence 4467777788999999999998764322111000000 0 000000 000111 34567778889999999
Q ss_pred eCCCCeeeEEEcCccccccccceeE-EEEcCCCCEEEEee-------CCcEEEEEcCCCCCeeeeecccc-c--------
Q psy2305 93 DSVGGEIKATYRPYNQVDEVTHAYS-LAFSLDGNKIYAGF-------LSEVKIFSTDRPGRECVSRNLKP-W-------- 155 (334)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~-------d~~i~i~d~~~~~~~~~~~~~~~-~-------- 155 (334)
|.++|+.+..+......... .+.+ ..+ .++ .++++. ++.|..+|..+ ++.+....... .
T Consensus 133 D~~tG~~~W~~~~~~~~~~~-~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~~~~ 208 (668)
T 1kv9_A 133 DAKTGKAIWSQQTTDPAKPY-SITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADT-GKLAWRFYTVPGDPALPYEHP 208 (668)
T ss_dssp ETTTCCEEEEEECSCTTSSC-BCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCSSH
T ss_pred ECCCCCEeeeeccCCCCCcc-eecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCC-CcEEEEecccCCCCCcccccc
Confidence 99999998877653211000 1111 011 134 444432 47899999987 66654321100 0
Q ss_pred ------------------ccccceEEEEEcCCCCcEEEEeecCC-------------------eEEEEECCCCCceEeec
Q psy2305 156 ------------------FRKNIVSAIAINPVHPDICALGTYSK-------------------IIGLFSDSDGRPLFFLK 198 (334)
Q Consensus 156 ------------------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~ 198 (334)
........+++.|+.. +++.+..++ .|..+|.++++.+-.++
T Consensus 209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred ccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 0111123478888887 888887666 49999999999887775
Q ss_pred c--CC-------CCeEEEEEccCCc---EEEeeecCCCeEEEEEccCCCccc
Q psy2305 199 G--HN-------GGITHLEFSSNGI---LLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 199 ~--~~-------~~i~~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
. |. .+.....+..+|+ .++.++ .+|.++++|..+ ++.+
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~l 337 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTN-GKLI 337 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTT-CCEE
T ss_pred cCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCC-CCEe
Confidence 3 22 2333333334675 688888 899999999988 6655
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.96 E-value=2.7e-07 Score=71.50 Aligned_cols=176 Identities=10% Similarity=-0.029 Sum_probs=114.2
Q ss_pred ecCCCcEEEEeeCC--CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeee
Q psy2305 73 IDGFTSYFLCSSMY--APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECV 148 (334)
Q Consensus 73 ~s~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~ 148 (334)
|++ +.++.+.+.+ ..|+.+|+++++.+..+.... ........+++..|.... ++.+.+||..+ .+.+.
T Consensus 28 ~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~------~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t-l~~~~ 99 (243)
T 3mbr_X 28 YLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP------PYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT-LTPRA 99 (243)
T ss_dssp EET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT------TCCEEEEEEETTEEEEEESSSSEEEEEETTT-TEEEE
T ss_pred EEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC------CcceeEEEEeCCEEEEEEeeCCEEEEEECCc-CcEEE
Confidence 354 5566666654 489999999999988876543 223333333456666543 89999999987 55555
Q ss_pred eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----CCeEEEEEccCCcEEEeeecCC
Q psy2305 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----GGITHLEFSSNGILLFSGARKD 223 (334)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~d 223 (334)
..+. .+ .-..++ +++. .|+.+..++.|.++|.++.+.+.++.-.. ..++.+.|. +|+..+..- .+
T Consensus 100 ti~~--~~---~Gwglt--~dg~-~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw-~s 169 (243)
T 3mbr_X 100 RFRY--PG---EGWALT--SDDS-HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW-LT 169 (243)
T ss_dssp EEEC--SS---CCCEEE--ECSS-CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-TT
T ss_pred EEeC--CC---CceEEe--eCCC-EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC-CC
Confidence 4321 11 112343 5666 55555568899999999998887775322 345677776 676554444 68
Q ss_pred CeEEEEEccCCCccceeeccc-----------ccCCceEEEEecCCCceEEeeec
Q psy2305 224 CEIICWDLRNPGCILHTFPRQ-----------VSTNQRVYFDLTSCSNYLLSGNT 267 (334)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~~~~l~~~~~ 267 (334)
..|.+.|.++ ++.+..+... ....-...++++|+++.|++.+.
T Consensus 170 ~~I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 8999999998 7766665422 11234567999998777666654
No 265
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.95 E-value=1.2e-05 Score=68.14 Aligned_cols=228 Identities=12% Similarity=-0.041 Sum_probs=134.8
Q ss_pred EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE-EEeeCCCcEEEEe
Q psy2305 15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHLWD 93 (334)
Q Consensus 15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~iwd 93 (334)
+|+.+. ...|+..++...... ..+ .....+..++| ++.+..| .+-...+.|..++
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~--------------~~~--~~~~~~~~l~~-------d~~~~~lywsD~~~~~I~~~~ 140 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT--------------SLI--PNLRNVVALDT-------EVASNRIYWSDLSQRMICSTQ 140 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE--------------EEE--CSCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred eeEEec-cceeEEEccCCccee--------------Eec--cccCcceEEee-------eeccCceEEEecCCCeEEEEE
Confidence 444443 467888888876543 111 12344566666 5544444 4444567888888
Q ss_pred CCCC----eeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305 94 SVGG----EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN 167 (334)
Q Consensus 94 ~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (334)
+... .....+..... .+..+++.+.+..|+.+ . .+.|.+.+++ +..... .....-.....++++
T Consensus 141 ~~g~~~~~~~~~~~~~~~~-----~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~---l~~~~~~~P~~iavd 210 (400)
T 3p5b_L 141 LDRAHGVSSYDTVISRDIQ-----APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKT---LFRENGSKPRAIVVD 210 (400)
T ss_dssp C------CCCEEEECSSCS-----CEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEE---EEECSSCCEEEEEEE
T ss_pred cccCCCCCcceEEEeCCCC-----CcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEE---EEeCCCCCcceEEEe
Confidence 7642 12222221111 57799999866666644 3 7889998887 433332 122233457899999
Q ss_pred CCCCcEEEEee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc-c
Q psy2305 168 PVHPDICALGT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR-Q 244 (334)
Q Consensus 168 ~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~ 244 (334)
|.+. .|+... ..+.|...++........+...-.....|+++|++..|+.+....+.|..+|+.. .....+.. .
T Consensus 211 p~~g-~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~~ 287 (400)
T 3p5b_L 211 PVHG-FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDE 287 (400)
T ss_dssp TTTT-EEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCCEEEEECS
T ss_pred cccC-eEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--CccEEEEeCC
Confidence 9766 454443 2478999998644333333333356789999998888877764678899999874 33333322 1
Q ss_pred ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 245 VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 245 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
........+++. .+.++++-...+.|..+|..+++
T Consensus 288 ~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 288 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 122344556653 34455555667889999977664
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.93 E-value=1.8e-06 Score=74.03 Aligned_cols=198 Identities=10% Similarity=-0.001 Sum_probs=118.2
Q ss_pred ecccceecCC--CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCC-----cEEEEE
Q psy2305 67 YPKTSSIDGF--TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLS-----EVKIFS 139 (334)
Q Consensus 67 ~~~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~-----~i~i~d 139 (334)
.|..++++|+ +..|..+...+.|+.+|..+++......... .+..++++++|+++++...+ .+..++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~------~P~giavd~dG~lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIG------QCADVNFTLNGDMVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCS------CEEEEEECTTCCEEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCC------CccEEEECCCCCEEEEcCCCCcccceEEEEE
Confidence 3567788884 3344444444889999998877655443211 57899999999944444321 133333
Q ss_pred cCCCCCeeeeecccccccccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEee-c-cCCCCeEEEEEccCCcEE
Q psy2305 140 TDRPGRECVSRNLKPWFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFL-K-GHNGGITHLEFSSNGILL 216 (334)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l 216 (334)
... +..... ... .-.....++++| ++. ++++-..++.|+.+|..++.....+ . +....-..++|+|+|++|
T Consensus 214 ~~~-~~~~~~---~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 214 RAS-GFTERL---SLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp GGG-TTCCEE---EEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred CCC-Ceeccc---ccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence 321 111000 111 223456788999 665 6666566789999998877652332 1 112233579999999977
Q ss_pred EeeecCCCeEEEEEccCCCcc---ceeeccc-------------ccCCceEEEEe---------cCCCceEEeeecCCcE
Q psy2305 217 FSGARKDCEIICWDLRNPGCI---LHTFPRQ-------------VSTNQRVYFDL---------TSCSNYLLSGNTNGDL 271 (334)
Q Consensus 217 ~~~~~~d~~i~iwd~~~~~~~---~~~~~~~-------------~~~~~~~~~~~---------s~~~~~l~~~~~dg~i 271 (334)
+.+....+.|+.+++...... ...+.+. ..-.....+++ .++|.++++-...+.|
T Consensus 288 Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 288 YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 666636788999887631111 1122111 00123456788 7777777776777889
Q ss_pred EEEeC
Q psy2305 272 SIWNV 276 (334)
Q Consensus 272 ~iwd~ 276 (334)
+.++.
T Consensus 368 ~~~~~ 372 (433)
T 4hw6_A 368 RVLTP 372 (433)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 99885
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.92 E-value=5.7e-07 Score=80.12 Aligned_cols=276 Identities=12% Similarity=0.063 Sum_probs=154.4
Q ss_pred CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EEEEee------C
Q psy2305 13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YFLCSS------M 85 (334)
Q Consensus 13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l~~~~------~ 85 (334)
+..++.++.|+.|.-+|..+++..-......... .. .....++.. - -..+++ .+++++ .
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~-----~~-~~~~sP~v~--~------~~~~G~~~v~vg~~~~e~~~ 182 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA-----GY-TMTGAPTIV--K------DGKTGKVLLIHGSSGDEFGV 182 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG-----TC-BCCSCCEEE--E------CTTTCCEEEEECCBCGGGCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc-----Cc-ccccCCEEe--C------CCcCCcEEEEEeccccccCC
Confidence 4567788889999999999998763222110000 00 000011100 0 001232 455554 3
Q ss_pred CCcEEEEeCCCCeeeEEEcCcccc----------------------c--------------cccceeEEEEcCCCCEEEE
Q psy2305 86 YAPIHLWDSVGGEIKATYRPYNQV----------------------D--------------EVTHAYSLAFSLDGNKIYA 129 (334)
Q Consensus 86 d~~i~iwd~~~~~~~~~~~~~~~~----------------------~--------------~~~~v~~~~~~~~~~~l~~ 129 (334)
++.|.-+|.++|+.+......... + ....-..+++.|+...++.
T Consensus 183 ~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv 262 (582)
T 1flg_A 183 VGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIV 262 (582)
T ss_dssp BCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEE
Confidence 788999999999987765431100 0 0000023567777777764
Q ss_pred ee---------------------C----CcEEEEEcCCCCCeeeeecccccccc--------cceEEEEEc-CCCC--cE
Q psy2305 130 GF---------------------L----SEVKIFSTDRPGRECVSRNLKPWFRK--------NIVSAIAIN-PVHP--DI 173 (334)
Q Consensus 130 ~~---------------------d----~~i~i~d~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~--~~ 173 (334)
+. | +.|..+|..+ ++..-... ...|. .++. +... .+|+ ..
T Consensus 263 ~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T-G~~~W~~q--~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~ 338 (582)
T 1flg_A 263 GAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS-GEVKWFYQ--HTPNDAWDFSGNNELVL-FDYKAKDGKIVKA 338 (582)
T ss_dssp EECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT-CCEEEEEE--SSTTCCSCCCCCCCCEE-EEEECSSSCEEEE
T ss_pred eCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC-CCEEEEEe--CCCCCcccccCCCCcEE-EeeecCCCCEEEE
Confidence 43 1 5788999987 66655321 22221 1221 2222 4663 26
Q ss_pred EEEeecCCeEEEEECCCCCceEeeccCC-------------CCe--------------------------------EEEE
Q psy2305 174 CALGTYSKIIGLFSDSDGRPLFFLKGHN-------------GGI--------------------------------THLE 208 (334)
Q Consensus 174 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~i--------------------------------~~~~ 208 (334)
++.++.+|.++++|.++++.+..+.... .++ ..++
T Consensus 339 v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a 418 (582)
T 1flg_A 339 TAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMA 418 (582)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCE
T ss_pred EEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCce
Confidence 7889999999999999998876553221 000 1345
Q ss_pred EccCCcEEEeeec--------------------------------CCCeEEEEEccCCCccceeecccccCCceEEEEec
Q psy2305 209 FSSNGILLFSGAR--------------------------------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT 256 (334)
Q Consensus 209 ~~~~~~~l~~~~~--------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (334)
++|+...+++... .++.|..||+.+ ++.+.+...... ...-...
T Consensus 419 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~t-G~~~W~~~~~~~---~~~g~~~ 494 (582)
T 1flg_A 419 YSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVS-GKVVWEHKEHLP---LWAGVLA 494 (582)
T ss_dssp ECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTT-CCEEEEEEESSC---CCSCCEE
T ss_pred ECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCC-CCEEEEecCCCC---CcccceE
Confidence 6666555554320 257899999988 666655543211 1110111
Q ss_pred CCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccccc-ceeeeccCCCcccceeeEEeeec
Q psy2305 257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT-NGVRWKHHKFERDLLVADATCSG 327 (334)
Q Consensus 257 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~s~~~~~~~~~l~t~~~ 327 (334)
..+.+++.++.||.++.||.+++ +.+.++....+.. .-+.| ..+|. +|+++.+.
T Consensus 495 tagglvf~g~~dg~l~A~D~~tG------------~~lW~~~~~~g~~a~P~~y--~~~G~---qYv~~~~G 549 (582)
T 1flg_A 495 TAGNLVFTGTGDGYFKAFDAKSG------------KELWKFQTGSGIVSPPITW--EQDGE---QYLGVTVG 549 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEEC
T ss_pred eCCCEEEEECCCCcEEEEECCCC------------CEEEEecCCCCcccCceEE--EECCE---EEEEEEcc
Confidence 24667778999999999999999 6666665543322 23677 77882 45555433
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.89 E-value=4.4e-06 Score=65.64 Aligned_cols=205 Identities=9% Similarity=0.041 Sum_probs=123.5
Q ss_pred CceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
+.+..++|+|++..|+ +...++.|...|.. ++... .+........-.+++ .+++.++
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~--------------~i~l~g~~D~EGIa~-------~~~g~~~ 84 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIR--------------TIPLDFVKDLETIEY-------IGDNQFV 84 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEE--------------EEECSSCSSEEEEEE-------CSTTEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEE--------------EEecCCCCChHHeEE-------eCCCEEE
Confidence 3478899999766554 56678889999987 55542 221111123344444 6688777
Q ss_pred EEeeCCCcEEEEeCCCCee---eEEEcC-ccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCC--CCCeeeee--c
Q psy2305 81 LCSSMYAPIHLWDSVGGEI---KATYRP-YNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDR--PGRECVSR--N 151 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~--~~~~~~~~--~ 151 (334)
++.-.++.+.++++..... +..... ............++|+|+++.|+++. .....+|.++. ....+... +
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence 7766678888888765432 222221 11111122578999999998777665 44445555541 01111110 0
Q ss_pred -ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC---------CCeEEEEEccCCcEEEeeec
Q psy2305 152 -LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN---------GGITHLEFSSNGILLFSGAR 221 (334)
Q Consensus 152 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~ 221 (334)
+....+...+.+++++|...++++....++.|.++|.. ++.+..+.-.. .....|+|.++|+ |+..+
T Consensus 165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE-
T ss_pred hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc-
Confidence 00011334678999999887677777888999999964 66655543221 2567999999997 55556
Q ss_pred CCCeEEEEEc
Q psy2305 222 KDCEIICWDL 231 (334)
Q Consensus 222 ~d~~i~iwd~ 231 (334)
+.+.++.+.-
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 6666666543
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=1.9e-05 Score=73.27 Aligned_cols=286 Identities=9% Similarity=0.008 Sum_probs=160.5
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.++...++|.+.+ |+.+ -+.+||..+++... +.... ..........|.++.. .++|.+ ..
T Consensus 212 ~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~-~~~~~-------~~~~~l~~~~i~~i~~-------d~~g~l-Wi 273 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTN-FHNNP-------GNIHGALSSYIFSIKQ-------LKDNKL-WI 273 (781)
T ss_dssp SEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-------------------CCCCEEEEEE-------CTTSEE-EE
T ss_pred ceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEE-EEcCC-------CccccccCceEEEEEE-------CCCCCE-EE
Confidence 478888888887554 4444 58889987665431 00000 0000012245666554 557764 44
Q ss_pred eeCCCcEEEEeCCCCeeeEEEc-------Cc--cccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYR-------PY--NQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK 153 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~ 153 (334)
|+..+-|.++|..+++...... .. ...-....|.++...++|.+.+...++-|..++... . ........
T Consensus 274 gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~ 351 (781)
T 3v9f_A 274 ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAP-P-TFHTWSYS 351 (781)
T ss_dssp EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSC-C-SCEEEC--
T ss_pred EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCC-C-cceeeccC
Confidence 5554558889987765432211 00 011111278999999998766655577788888774 2 22211000
Q ss_pred ------ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee---ccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305 154 ------PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL---KGHNGGITHLEFSSNGILLFSGARKDC 224 (334)
Q Consensus 154 ------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~d~ 224 (334)
.......|.++...++|. |..|+.++.|..||..+++..... ......|.++...++|.+. .|+ .++
T Consensus 352 ~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt-~~~ 427 (781)
T 3v9f_A 352 PTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGT-YLG 427 (781)
T ss_dssp --CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEE-TTE
T ss_pred ccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEe-ccC
Confidence 011235689999988886 566777778999997654322111 1234578899888888654 466 567
Q ss_pred eEEEEEccCCCccceeecc-cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec---cc
Q psy2305 225 EIICWDLRNPGCILHTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS---AH 300 (334)
Q Consensus 225 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~ 300 (334)
-+..+|..+ ++ ...+.. ......+.++...++|.+.+. +. +-|..+|..+++.. ...... ..
T Consensus 428 Gl~~~~~~~-~~-~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~----------~~~~~~~~~~~ 493 (781)
T 3v9f_A 428 NISYYNTRL-KK-FQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVI----------HHYDTSNSQLL 493 (781)
T ss_dssp EEEEECSSS-CE-EEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCC----------EEECTTTSSCS
T ss_pred CEEEEcCCC-Cc-EEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEE----------ecccCcccccc
Confidence 788888765 32 222221 122456778877778876554 44 45889998876321 111100 11
Q ss_pred ccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305 301 QDCTNGVRWKHHKFERDLLVADATCSGQITNV 332 (334)
Q Consensus 301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~ 332 (334)
...|.++.. .+++ .+.+....+|.++
T Consensus 494 ~~~i~~i~~--d~~g----~lWigt~~~Gl~~ 519 (781)
T 3v9f_A 494 ENFVRSIAQ--DSEG----RFWIGTFGGGVGI 519 (781)
T ss_dssp CSCEEEEEE--CTTC----CEEEEESSSCEEE
T ss_pred cceeEEEEE--cCCC----CEEEEEcCCCEEE
Confidence 346788888 8888 6555444455544
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.87 E-value=1.2e-05 Score=63.22 Aligned_cols=203 Identities=10% Similarity=0.028 Sum_probs=124.7
Q ss_pred eeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEE
Q psy2305 59 GIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVK 136 (334)
Q Consensus 59 ~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 136 (334)
..+..++| +|+++ ++++...++.|...|.. ++.++.+..... . ....+++.+++.++++.. ++.+.
T Consensus 27 ~~lSGla~-------~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~---D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 27 NNISSLTW-------SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-K---DLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp SCEEEEEE-------ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-S---SEEEEEECSTTEEEEEETTTTEEE
T ss_pred cCcceeEE-------eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-C---ChHHeEEeCCCEEEEEECCCCcEE
Confidence 35777777 55554 55557778889999987 888777754221 1 567889999988766654 78899
Q ss_pred EEEcCCCCC--eeeeeccc--ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC---CCCceEeec-------cCCC
Q psy2305 137 IFSTDRPGR--ECVSRNLK--PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS---DGRPLFFLK-------GHNG 202 (334)
Q Consensus 137 i~d~~~~~~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~-------~~~~ 202 (334)
++++...+. ......+. ..........++|+|.++ .|.++.+.....+|.+. ....+..+. .+..
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 999876443 11211111 112345578999999998 56656555444444443 111222221 1234
Q ss_pred CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc--c-----CCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305 203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV--S-----TNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275 (334)
Q Consensus 203 ~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~-----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 275 (334)
.+.+++++|....|+..+..++.+..+|.. ++.+..+.-.. . -...-.++|.++|++.++ ++.+.++.+.
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 578999999665555545377888888877 44444433221 0 124567899999985555 6777777665
Q ss_pred CC
Q psy2305 276 VN 277 (334)
Q Consensus 276 ~~ 277 (334)
..
T Consensus 251 ~~ 252 (255)
T 3qqz_A 251 PQ 252 (255)
T ss_dssp C-
T ss_pred ec
Confidence 43
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.5e-05 Score=74.04 Aligned_cols=286 Identities=8% Similarity=-0.016 Sum_probs=161.5
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
+.|.++...++|. |-.|+.++-|..|+........ +...... . .........|.++.. .++++ |.
T Consensus 313 ~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~--~---~~~~l~~~~v~~i~~-------d~~g~-lW 377 (781)
T 3v9f_A 313 ASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQ--M---NESSLSNKVVSSVCD-------DGQGK-LW 377 (781)
T ss_dssp SCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----C--C---CSSCCSSSCEEEEEE-------CTTSC-EE
T ss_pred CeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCccc--c---ccCCCCCcceEEEEE-------cCCCC-EE
Confidence 3578888888886 4456656668888887665431 0000000 0 000012245666554 55666 44
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIV 161 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 161 (334)
.|+.++-|..|+..++.... +... .......|.++...+++.+.+...++-+..++..+ + ....... .......|
T Consensus 378 igt~~~Gl~~~~~~~~~~~~-~~~~-~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~-~~~~~~~v 452 (781)
T 3v9f_A 378 IGTDGGGINVFENGKRVAIY-NKEN-RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-K-KFQIIEL-EKNELLDV 452 (781)
T ss_dssp EEEBSSCEEEEETTEEEEEC-C------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-C-EEEECCS-TTTCCCCE
T ss_pred EEeCCCcEEEEECCCCeEEE-ccCC-CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-C-cEEEecc-CCCCCCeE
Confidence 55655668899976543321 1110 01111278999988888766644467788888764 2 2332110 01234678
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-----CCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-----NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~ 236 (334)
.++...+++. |..|+. +.|..||..+++........ ...|.++...++|++.+ ++ .++-+..||... +.
T Consensus 453 ~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt-~~~Gl~~~~~~~-~~ 526 (781)
T 3v9f_A 453 RVFYEDKNKK--IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GT-FGGGVGIYTPDM-QL 526 (781)
T ss_dssp EEEEECTTSE--EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EE-SSSCEEEECTTC-CE
T ss_pred EEEEECCCCC--EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EE-cCCCEEEEeCCC-Ce
Confidence 9999888885 555665 67999998776543332211 35789999998887554 44 444577788764 22
Q ss_pred cceeecc--cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc-cccccceeeeccCC
Q psy2305 237 ILHTFPR--QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA-HQDCTNGVRWKHHK 313 (334)
Q Consensus 237 ~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~s~ 313 (334)
...+.. ......+.++...++|.+.++.. +|-+..||..+++. +......+ ....|.++.. .+
T Consensus 527 -~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~----------~~~~~~~gl~~~~i~~i~~--d~ 592 (781)
T 3v9f_A 527 -VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY----------QVFQRKEGLPNTHIRAISE--DK 592 (781)
T ss_dssp -EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC----------EEECGGGTCSCCCCCEEEE--CS
T ss_pred -EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE----------EEccccCCCCCceEEEEEE--CC
Confidence 333321 11244677888888888666543 66548888877521 11111111 1235677777 77
Q ss_pred CcccceeeEEeeecceeee
Q psy2305 314 FERDLLVADATCSGQITNV 332 (334)
Q Consensus 314 ~~~~~~~~l~t~~~d~~i~ 332 (334)
+| .+.++ +.+|.++
T Consensus 593 ~g----~lW~~-t~~Gl~~ 606 (781)
T 3v9f_A 593 NG----NIWAS-TNTGISC 606 (781)
T ss_dssp SS----CEEEE-CSSCEEE
T ss_pred CC----CEEEE-cCCceEE
Confidence 77 55444 3555443
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.86 E-value=2e-05 Score=64.66 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=116.2
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCC--Ceeeeeccccc
Q psy2305 80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPG--RECVSRNLKPW 155 (334)
Q Consensus 80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~--~~~~~~~~~~~ 155 (334)
|+.+.. ..|+..|+.+.+....+.... .+..++|++++..|+.+. .+.|..+++.... ..... ...
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~------~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~---~~~ 73 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VIS 73 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE---EEC
T ss_pred EEEECC-CeEEEEECCCcceEehhcCCC------ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE---EEe
Confidence 444433 468999998776655554322 678999999877776554 6899999987410 11111 112
Q ss_pred ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC-CeEEEEEccCC
Q psy2305 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD-CEIICWDLRNP 234 (334)
Q Consensus 156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~iwd~~~~ 234 (334)
..-.....+++.+.+.+++++-...+.|.++++........+.........+++.|.+..|+.+.... +.|...++.
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-- 151 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-- 151 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--
Confidence 22234578999876653556656788999999864433333333345678999999776666655123 678888876
Q ss_pred CccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCC
Q psy2305 235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTS 279 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 279 (334)
+.....+... .-.....++++|++..|+.+. ..+.|..+|+...
T Consensus 152 G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 4333333221 234567789998776666554 4678999998753
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.86 E-value=2e-05 Score=65.63 Aligned_cols=186 Identities=8% Similarity=-0.043 Sum_probs=116.4
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+|+.+. ...|+..++........+.... .+..++|++.+..|+... .+.|..+++.. ..... ....
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~~~------~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~~---~~~~ 113 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVTLDRILRANLNG--SNVEE---VVST 113 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECS
T ss_pred eeEeec-ccceEEEeCCCCeeEEeecCCC------ceEEEEEeccccEEEEEeccCCceEEEecCC--CCceE---EEeC
Confidence 344433 3458888886655444443322 578999998777777553 78899999874 22221 1122
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC-CeEEEEEccCCC
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD-CEIICWDLRNPG 235 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~iwd~~~~~ 235 (334)
.......+++.+.+.+++++-...+.|.+.++........+.........++++|.+..|+...... +.|..+++..
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-- 191 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-- 191 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC--
Confidence 2234578999986663556666678999999865443333333345678999999766666655244 7788888763
Q ss_pred ccceeecccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCC
Q psy2305 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTS 279 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~ 279 (334)
.....+... .......++++|++..|+.+ ...+.|..+++...
T Consensus 192 ~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 192 SGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp CSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 333333221 23456778999877666555 44678999998754
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.85 E-value=7.9e-06 Score=69.04 Aligned_cols=186 Identities=9% Similarity=-0.031 Sum_probs=117.1
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+|+.+. ...|+..++........+.... .+..++|.+.+..|+... .+.|..+++.. ..... ....
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~------~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~~---~~~~ 156 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVTLDRILRANLNG--SNVEE---VVST 156 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCEEE---EECS
T ss_pred eeEeec-CccceeeccCCCcEEEEecCCC------ccEEEEEecCCCeEEEEeCCCCcEEEEecCC--CCcEE---EEeC
Confidence 344433 3568888887665544444322 578999998777776553 78899999874 32221 1122
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC-CeEEEEEccCCC
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD-CEIICWDLRNPG 235 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~iwd~~~~~ 235 (334)
.......+++.+.+.+++++-...+.|.+.++........+.........+++.|.+..|+.+.... +.|..+++. +
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G 234 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--G 234 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--S
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--C
Confidence 2234567899986663556666678899999865443333333345678999999777776665234 678887776 3
Q ss_pred ccceeecccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCC
Q psy2305 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTS 279 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~ 279 (334)
.....+... .......++++|++..|+.+ ...+.|..+++...
T Consensus 235 ~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 235 SGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp CSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 333333221 23346778999877666555 44678999998754
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.81 E-value=3e-05 Score=63.50 Aligned_cols=229 Identities=14% Similarity=-0.005 Sum_probs=134.9
Q ss_pred EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC-CcEEEEeeCCCcEEEEe
Q psy2305 15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF-TSYFLCSSMYAPIHLWD 93 (334)
Q Consensus 15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~iwd 93 (334)
+|+.+. ...|+..++...... ..+..........++| ++. +.++.+-...+.|..++
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~--------------~~~~~~~~~~~~~ld~-------d~~~~~lyw~D~~~~~I~r~~ 63 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKEN--------------ATIVVGGLEDAAAVDF-------VFSHGLIYWSDVSEEAIKRTE 63 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSC--------------CEEEEEEEEEEEEEEE-------EGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEc-cCeEEEEECCCCceE--------------EEEEecCCCccEEEEE-------EeCCCEEEEEECCCCcEEEEE
Confidence 344443 467999999876421 1111112233456666 544 44555555667899999
Q ss_pred CCCCeee-EEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305 94 SVGGEIK-ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH 170 (334)
Q Consensus 94 ~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (334)
+..+... ..+.. ... .+..+++.+.+..|+.+ . .+.|.+++++. ..... ...........+++.|.+
T Consensus 64 ~~g~~~~~~~~~~--~l~---~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~---l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 64 FNKTESVQNVVVS--GLL---SPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKV---LFWQELDQPRAIALDPSS 133 (318)
T ss_dssp TTSSSCCCEEEEE--CCS---CCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECSSCSSEEEEEEEGGG
T ss_pred ccCCCceEEEEcC--CCC---CccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEE---EEeCCCCCccEEEEeCCC
Confidence 8765321 11111 111 45789999866666544 3 78899999873 33221 122334567899999976
Q ss_pred CcEEEEee--cCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccC
Q psy2305 171 PDICALGT--YSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247 (334)
Q Consensus 171 ~~~l~~~~--~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 247 (334)
. .|+... ..+.|..+++. +.....+ ...-.....++++|++..|+.+....+.|..+|+.. .....+... ..
T Consensus 134 g-~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~-~~ 208 (318)
T 3sov_A 134 G-FMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKG-SL 208 (318)
T ss_dssp T-EEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-CC
T ss_pred C-EEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--CceEEEecC-CC
Confidence 6 555444 35789999875 3333333 223345689999998777777664678899999874 323333221 13
Q ss_pred CceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL 281 (334)
Q Consensus 248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 281 (334)
.....+++.. +.++.+-...+.|..++..+++.
T Consensus 209 ~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 209 PHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 3445566643 34555555678899999876643
No 276
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.81 E-value=6.3e-05 Score=69.18 Aligned_cols=193 Identities=12% Similarity=-0.045 Sum_probs=115.6
Q ss_pred cCC-CcEEEEeeCCCcEEEEeCCCC----eeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCe
Q psy2305 74 DGF-TSYFLCSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRE 146 (334)
Q Consensus 74 s~~-~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~ 146 (334)
++. +.++++-...+.|+.+++... .....+..... .+..|++.+.+..|+.+. .+.|.+.+++ +..
T Consensus 432 d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~-----~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~ 504 (791)
T 3m0c_C 432 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-----APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVK 504 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETT--SSS
T ss_pred cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC-----CcceeeeeecCCcEEEEecCCCeEEEEeCC--CCe
Confidence 554 444555555678888887642 22223321111 567899999887777554 7899999988 443
Q ss_pred eeeecccccccccceEEEEEcCCCCcEEEEee-c-CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGT-Y-SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC 224 (334)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 224 (334)
... ...........|+++|.+. .|+... . .+.|...++........+...-.....|++++.+..|+.+.....
T Consensus 505 ~~~---l~~~~l~~P~gIaVDp~~g-~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 505 RKT---LFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp EEE---EEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEE---EEeCCCCCcceEEEecCCC-CEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 332 1223334578999999866 454443 2 378999998644333333333456889999988777777764667
Q ss_pred eEEEEEccCCCccceeec-ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 225 EIICWDLRNPGCILHTFP-RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 225 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
.|...++.. .....+. ..........+++.. +.++++-...+.|...|..+++
T Consensus 581 ~I~~~d~dG--~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 581 SISSIDVNG--GNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEEETTS--CSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEecCC--CceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 899998874 3333332 211223345566533 3444444456788888877663
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.80 E-value=7.1e-06 Score=72.96 Aligned_cols=209 Identities=10% Similarity=-0.011 Sum_probs=114.1
Q ss_pred CcEEEEeeC-CCeEEEEEC-CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEE
Q psy2305 13 GTCLLTNSN-DNHLRTFDL-PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIH 90 (334)
Q Consensus 13 ~~~l~~~~~-d~~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 90 (334)
+..+++++. ++.|.-+|. .+++..-.......... ..... ...+. ..+++ .+..+++++.|+.|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~--~~~~~---~~~~~------~~~~~--~~~~v~v~~~dg~l~ 128 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST--KAVMC---CDVVD------RGLAY--GAGQIVKKQANGHLL 128 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG--GGGCT---TCSCC------CCCEE--ETTEEEEECTTSEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc--ccccc---ccccc------cccEE--ECCEEEEEeCCCEEE
Confidence 345666666 788999999 88887632211100000 00000 00000 00111 345677778899999
Q ss_pred EEeCCCCeeeEEEcCcccccccccee-EEEEcCCCCEEEEee------CCcEEEEEcCCCCCeeeeecccccc-------
Q psy2305 91 LWDSVGGEIKATYRPYNQVDEVTHAY-SLAFSLDGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKPWF------- 156 (334)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~------- 156 (334)
.+|.++|+.+..+....+.... .+. .... .++..++... ++.|..+|..+ ++.+.........
T Consensus 129 alD~~tG~~~W~~~~~~~~~~~-~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~~~~~~~p 205 (571)
T 2ad6_A 129 ALDAKTGKINWEVEVCDPKVGS-TLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKT-GELKWRAFATGSDDSVRLAK 205 (571)
T ss_dssp EEETTTCCEEEEEECCCGGGTC-BCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHHTBCT
T ss_pred EEECCCCCEEEEecCCCCCccc-eeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCC-CcEEEEEccCCCccccccCc
Confidence 9999999998776543211000 111 1111 1444444333 58999999987 6655432110000
Q ss_pred ---------------------------cccceEEEEEcCCCCcEEEEeecC----------------CeEEEEECCCCCc
Q psy2305 157 ---------------------------RKNIVSAIAINPVHPDICALGTYS----------------KIIGLFSDSDGRP 193 (334)
Q Consensus 157 ---------------------------~~~~v~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~ 193 (334)
.......+++.++.. .++.+..+ +.|..+|.++++.
T Consensus 206 ~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~ 284 (571)
T 2ad6_A 206 DFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA 284 (571)
T ss_dssp TTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred ccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE
Confidence 000012356777666 66655532 3699999999998
Q ss_pred eEeeccC--C--------CCeEEEEEccCCc---EEEeeecCCCeEEEEEccCCCccceee
Q psy2305 194 LFFLKGH--N--------GGITHLEFSSNGI---LLFSGARKDCEIICWDLRNPGCILHTF 241 (334)
Q Consensus 194 ~~~~~~~--~--------~~i~~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~~~~ 241 (334)
+-.++.. . .++ -+...++|+ .++.++ .+|.++++|..+ ++.+..+
T Consensus 285 ~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~~w~~ 342 (571)
T 2ad6_A 285 KWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHID-RNGILYTLNREN-GNLIVAE 342 (571)
T ss_dssp EEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEEC-TTSEEEEEETTT-CCEEEEE
T ss_pred EEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeC-CCcEEEEEECCC-CCEEeee
Confidence 8776432 1 222 122335774 567777 799999999987 6665544
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.79 E-value=3.9e-05 Score=63.19 Aligned_cols=274 Identities=9% Similarity=0.016 Sum_probs=143.3
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
.+.+|.|.+++..+++ +..|.| +...+.++.=... ... ......+.++.+ ++ +..++
T Consensus 37 ~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~------------~~~~~~~~~~~~~i~~-------~~-~~~~~ 94 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPR------------TLVLDHSDYRFNSVSF-------QG-NEGWI 94 (327)
T ss_dssp CEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEEC------------CCCCSCCCCEEEEEEE-------ET-TEEEE
T ss_pred cEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeEC------------CCCCCCCCccEEEEEe-------cC-CeEEE
Confidence 4788999877777774 456765 3344444321000 000 011234566555 44 34444
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIV 161 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 161 (334)
+ +..+.|.. ....|+.-........ .+..+..+.+.+++..++++.++.| |.....++.-.. ........+
T Consensus 95 ~-g~~g~i~~-S~DgG~tW~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~---~~~~~~~~~ 165 (327)
T 2xbg_A 95 V-GEPPIMLH-TTDGGQSWSQIPLDPK--LPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQA---LVQEAIGVM 165 (327)
T ss_dssp E-EETTEEEE-ESSTTSSCEECCCCTT--CSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEE---EECSCCCCE
T ss_pred E-ECCCeEEE-ECCCCCCceECccccC--CCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEE---eecCCCcce
Confidence 4 44564433 2233443232221100 0114677888777777776666644 323322444332 223345578
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEE-EEC--CCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGL-FSD--SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i-~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
..+.+.|++. +++.+. +|.+.. .|- .+.+.+. ......+..+.+.++++.+++ + .+|.+++.+... ++.-
T Consensus 166 ~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~-~~G~~~~s~~D~-G~tW 238 (327)
T 2xbg_A 166 RNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-V-NGGKIAFSDPDN-SENW 238 (327)
T ss_dssp EEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-E-TTTEEEEEETTE-EEEE
T ss_pred EEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-e-CCceEEEecCCC-CCee
Confidence 8999999987 776654 454444 342 2222221 234567889999999876654 4 578887764221 2222
Q ss_pred eeeccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305 239 HTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER 316 (334)
Q Consensus 239 ~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~ 316 (334)
..+... .....+..+.+.+++.+++++. +|.| ++....++. |+.+.........+..+.| .+++
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t---------W~~~~~~~~~~~~~~~v~~--~~~~- 304 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT---------WQQDVDVKKVPSNFYKILF--FSPD- 304 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS---------CEECGGGTTSSSCCCEEEE--EETT-
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc---------cEEcCccCCCCCCeEEEEE--ECCC-
Confidence 222111 1123467788888887777654 6766 344454521 1222211122346788999 7666
Q ss_pred cceeeEEeeecceeee
Q psy2305 317 DLLVADATCSGQITNV 332 (334)
Q Consensus 317 ~~~~~l~t~~~d~~i~ 332 (334)
. +++++.+|.+.
T Consensus 305 ---~-~~~~G~~G~i~ 316 (327)
T 2xbg_A 305 ---Q-GFILGQKGILL 316 (327)
T ss_dssp ---E-EEEECSTTEEE
T ss_pred ---c-eEEEcCCceEE
Confidence 5 56666777765
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=1.1e-05 Score=69.13 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=130.2
Q ss_pred ceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305 3 IEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL 81 (334)
Q Consensus 3 ~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~ 81 (334)
....|+++| ++..|+++...+.|+.+|..++... .+.. ...... .++++++++.|+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~---------------~~~~-~~~~P~-------~ia~d~~G~~ly 194 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS---------------TVYS-GLSKVR-------TICWTHEADSMI 194 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE---------------EEEC-CCSCEE-------EEEECTTSSEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE---------------EEec-CCCCcc-------eEEEeCCCCEEE
Confidence 457899998 4556666655588999998876643 1111 122233 455588999666
Q ss_pred EeeCC-C----cEEEEeCCCCeee--EEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305 82 CSSMY-A----PIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 82 ~~~~d-~----~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 152 (334)
++... + .+.+.+. .+... ..+.... ....++++| ++.++++-. .+.|..++... ......
T Consensus 195 vad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~------~p~giavdp~~g~lyv~d~~~~~V~~~~~~~--~~~~~~-- 263 (430)
T 3tc9_A 195 ITNDQNNNDRPNNYILTR-ESGFKVITELTKGQ------NCNGAETHPINGELYFNSWNAGQVFRYDFTT--QETTPL-- 263 (430)
T ss_dssp EEECCSCTTSEEEEEEEG-GGTSCSEEEEEECS------SCCCEEECTTTCCEEEEETTTTEEEEEETTT--TEEEEE--
T ss_pred EEeCCCCcccceEEEEeC-CCceeeeeeeccCC------CceEEEEeCCCCEEEEEECCCCEEEEEECCC--CcEEEE--
Confidence 55442 2 2333443 33222 2222111 457899999 566555554 78899999874 322110
Q ss_pred cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--CCc--eEeeccC---------------CCCeE-EEEEc--
Q psy2305 153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--GRP--LFFLKGH---------------NGGIT-HLEFS-- 210 (334)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~--~~~~~~~---------------~~~i~-~~~~~-- 210 (334)
...........++|+|+++.++++-...+.|..++... ++. ...+.+. -.... .++..
T Consensus 264 ~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~ 343 (430)
T 3tc9_A 264 FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNP 343 (430)
T ss_dssp EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECG
T ss_pred EEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccc
Confidence 11112245678999999983344445678899988653 211 1222111 01122 44443
Q ss_pred ------cCCcEEEeeecCCCeEEEEEccCCCccceeeccc-----c-----------cCCceEEEEecCC-CceEEeeec
Q psy2305 211 ------SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ-----V-----------STNQRVYFDLTSC-SNYLLSGNT 267 (334)
Q Consensus 211 ------~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~-----------~~~~~~~~~~s~~-~~~l~~~~~ 267 (334)
++|.+.++-. ..+.|+.++.. +. +..+.+. . .-.....++++|+ +.++++-..
T Consensus 344 ~y~~~D~~g~lyvaD~-~n~~I~~i~~~--G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 419 (430)
T 3tc9_A 344 AYKGSSDEYDFYFCDR-ENHCIRILTPQ--GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419 (430)
T ss_dssp GGTTSSCCEEEEEEEG-GGTEEEEECTT--SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCeEEEEEC-CCcEEEEECCC--Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence 3344444333 56778887743 43 2222221 0 0124677889984 666666556
Q ss_pred CCcEEEEeCC
Q psy2305 268 NGDLSIWNVN 277 (334)
Q Consensus 268 dg~i~iwd~~ 277 (334)
+..|+.++++
T Consensus 420 n~rIr~i~~e 429 (430)
T 3tc9_A 420 NRRIRKIGYE 429 (430)
T ss_dssp GTEEEEEEEC
T ss_pred CCeEEEEccC
Confidence 7788887754
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.72 E-value=2.2e-05 Score=67.32 Aligned_cols=239 Identities=11% Similarity=0.038 Sum_probs=130.8
Q ss_pred ceeEEEEcCC--CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 3 IEEDVDEAPD--GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 3 ~V~~~~~sp~--~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
....++|+|+ +..|+.+...+.|+.++..++... .+.. ..... ..++++++++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~---------------~~~~-~~~~P-------~giavd~dG~ly 196 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD---------------IKTT-NIGQC-------ADVNFTLNGDMV 196 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE---------------EECC-CCSCE-------EEEEECTTCCEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE---------------Eeec-CCCCc-------cEEEECCCCCEE
Confidence 4578999995 334555544488999998777654 1111 11223 345558899944
Q ss_pred EEeeCC---Cc-EEEEeCCCCee-eEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeeccc
Q psy2305 81 LCSSMY---AP-IHLWDSVGGEI-KATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLK 153 (334)
Q Consensus 81 ~~~~~d---~~-i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~ 153 (334)
++.... .. +...+...+.. ...+.... ....++++| ++.+.++.. ++.|+.+|..+ +...... .
T Consensus 197 Vad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~------~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~--~ 267 (433)
T 4hw6_A 197 VVDDQSSDTNTGIYLFTRASGFTERLSLCNAR------GAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEE--V 267 (433)
T ss_dssp EEECCSCTTSEEEEEECGGGTTCCEEEEEECS------SBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEE--E
T ss_pred EEcCCCCcccceEEEEECCCCeeccccccccC------CCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEE--e
Confidence 443311 11 33333221111 01111111 457889999 565555544 78899998874 3331211 0
Q ss_pred ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC--CCCc--eEeeccC---------------CCCeEEEEE-----
Q psy2305 154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS--DGRP--LFFLKGH---------------NGGITHLEF----- 209 (334)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~--~~~~~~~---------------~~~i~~~~~----- 209 (334)
..+....-..++|+|+++.++++-...+.|+.++.. ++.. ...+.+. -.....+++
T Consensus 268 ~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~ 347 (433)
T 4hw6_A 268 MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEA 347 (433)
T ss_dssp ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGG
T ss_pred ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccc
Confidence 111122334799999998334444556889998865 2321 1122111 123567898
Q ss_pred ----ccCCcEEEeeecCCCeEEEEEccCCCccceeecccc----------------cCCceEEEEec-CCCceEEeeecC
Q psy2305 210 ----SSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV----------------STNQRVYFDLT-SCSNYLLSGNTN 268 (334)
Q Consensus 210 ----~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~s-~~~~~l~~~~~d 268 (334)
.++|.++++-. ..+.|+.++.. +. +..+.+.. .-.....++++ ++|.++++-..+
T Consensus 348 y~~dd~~g~lyvaD~-~n~~I~~~~~~--G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n 423 (433)
T 4hw6_A 348 YAGEEDEYDFYFCDR-DSHTVRVLTPE--GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN 423 (433)
T ss_dssp GTTSSCCEEEEEEET-TTTEEEEECTT--SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCcEEEEEC-CCCEEEEECCC--CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence 66676555555 67888888753 43 23332210 01235678888 667666666667
Q ss_pred CcEEEEeCC
Q psy2305 269 GDLSIWNVN 277 (334)
Q Consensus 269 g~i~iwd~~ 277 (334)
+.|+.++++
T Consensus 424 ~rIr~i~~e 432 (433)
T 4hw6_A 424 HRVRKIAPE 432 (433)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEecC
Confidence 788887764
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=3.3e-05 Score=66.58 Aligned_cols=204 Identities=10% Similarity=0.017 Sum_probs=117.6
Q ss_pred cccceecCC-CcEEEEe-eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE-------cCCCCEEEEee-CC-c--
Q psy2305 68 PKTSSIDGF-TSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF-------SLDGNKIYAGF-LS-E-- 134 (334)
Q Consensus 68 ~~~~~~s~~-~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~-d~-~-- 134 (334)
|..++|+|. ...|+.+ ...+.|++.|++++.....+.... ........++| ++++..|+++. .+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 445777883 4444444 444679999998877765554311 11225789999 99999777665 22 2
Q ss_pred ----EEEEEcCCCCCeee-e--ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC-------CCCc-------
Q psy2305 135 ----VKIFSTDRPGRECV-S--RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-------DGRP------- 193 (334)
Q Consensus 135 ----i~i~d~~~~~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~------- 193 (334)
|.+++....+.... . . .+... .....++++|++..++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~--~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQ--LIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEE--EEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cCceEEEEecCCCCceeecccce--eeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 55665332112110 0 0 11111 2345788999655366667778899999987 5543
Q ss_pred ----eEee-c-cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc---eeeccc-c------------cCCceE
Q psy2305 194 ----LFFL-K-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL---HTFPRQ-V------------STNQRV 251 (334)
Q Consensus 194 ----~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~---~~~~~~-~------------~~~~~~ 251 (334)
...+ . +.....+.++|+|+|++|+.+......|+.++.......+ ..+.+. . .-....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 1121 1 1234467999999999766665367889887765322111 122221 0 001122
Q ss_pred -EEEec-------CCCceEEeeecCCcEEEEeC
Q psy2305 252 -YFDLT-------SCSNYLLSGNTNGDLSIWNV 276 (334)
Q Consensus 252 -~~~~s-------~~~~~l~~~~~dg~i~iwd~ 276 (334)
.+... ++|.++++=..+.+|+.++.
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 23333 45676666667788999984
No 282
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.70 E-value=9.1e-06 Score=72.41 Aligned_cols=211 Identities=10% Similarity=-0.030 Sum_probs=117.1
Q ss_pred CcEEEEeeC-CCeEEEEEC-CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE----EEEeeCC
Q psy2305 13 GTCLLTNSN-DNHLRTFDL-PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY----FLCSSMY 86 (334)
Q Consensus 13 ~~~l~~~~~-d~~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~----l~~~~~d 86 (334)
+..|++++. ++.|.-+|. .+++..-.......... ....+.......++++|.+.. |++++.|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~-----------~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d 130 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAA-----------RAVACCDLVNRGLAYWPGDGKTPALILKTQLD 130 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG-----------GGGCSSCSCCCCCEEECCCSSSCCEEEEECTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccc-----------cccccccccccceEEEecCCcceeEEEEEcCC
Confidence 345666776 888999999 88887632221110000 000000000011233333333 7778889
Q ss_pred CcEEEEeCCCCeeeEEEcCccccccccceeE-EEEcCCCCEEEEee------CCcEEEEEcCCCCCeeeeeccccccc--
Q psy2305 87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYS-LAFSLDGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKPWFR-- 157 (334)
Q Consensus 87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~-- 157 (334)
+.|.-+|.++|+.+............ .+.+ ..+ .++..++.++ ++.|..+|..+ ++.+-.........
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~-~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~T-G~~~W~~~~~~~~~~~ 207 (599)
T 1w6s_A 131 GNVAALNAETGETVWKVENSDIKVGS-TLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKT-GEQVWRAYATGPDKDL 207 (599)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTC-BCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHH
T ss_pred CEEEEEECCCCCEEEeecCCCCCccc-eeecCCEE-ECCEEEEEecccccCCCCeEEEEECCC-CcEEEEEcCCCCcccc
Confidence 99999999999998776543211000 1111 111 1444443322 68999999988 66554321100000
Q ss_pred -------------------------------cc-ceEEEEEcCCCCcEEEEeecC----------------CeEEEEECC
Q psy2305 158 -------------------------------KN-IVSAIAINPVHPDICALGTYS----------------KIIGLFSDS 189 (334)
Q Consensus 158 -------------------------------~~-~v~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~ 189 (334)
.. .-..+++.+... +++.+..+ +.|..+|.+
T Consensus 208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~ 286 (599)
T 1w6s_A 208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD 286 (599)
T ss_dssp TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred ccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence 00 001356667776 77776654 489999999
Q ss_pred CCCceEeeccCC----------CCeEEEEEc-cCC---cEEEeeecCCCeEEEEEccCCCccceee
Q psy2305 190 DGRPLFFLKGHN----------GGITHLEFS-SNG---ILLFSGARKDCEIICWDLRNPGCILHTF 241 (334)
Q Consensus 190 ~~~~~~~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~~d~~i~iwd~~~~~~~~~~~ 241 (334)
+++.+-.++... .++. +... .+| +.++.++ .+|.++++|.++ ++.+...
T Consensus 287 TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~lw~~ 349 (599)
T 1w6s_A 287 TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD-RNGIVYTLDRTD-GALVSAN 349 (599)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC-TTSEEEEEETTT-CCEEEEE
T ss_pred CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC-CCcEEEEEECCC-CCEeecc
Confidence 999887765322 1221 2222 567 4677788 899999999987 6665544
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.69 E-value=2.2e-06 Score=79.04 Aligned_cols=191 Identities=8% Similarity=-0.031 Sum_probs=105.0
Q ss_pred eec-CCCcEEEEeeC-CC----cEEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEE
Q psy2305 72 SID-GFTSYFLCSSM-YA----PIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIF 138 (334)
Q Consensus 72 ~~s-~~~~~l~~~~~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~ 138 (334)
++| |||++|+.+.. +| .|+++|+.++ +.+.. .... ....++|+|||+.|+... + ..|..+
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~-----~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG-----TNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE-----ECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC-----ceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 348 89998886543 22 4999999988 63210 0001 234789999998887554 4 257777
Q ss_pred EcCCCCCeeeeeccccc-ccccceEEEEEcCCCCcEEEEeec---CCeEEEEECCCCC-ce--Eee-ccCCCCeEEEEEc
Q psy2305 139 STDRPGRECVSRNLKPW-FRKNIVSAIAINPVHPDICALGTY---SKIIGLFSDSDGR-PL--FFL-KGHNGGITHLEFS 210 (334)
Q Consensus 139 d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~-~~~~~~i~~~~~~ 210 (334)
++.+....-.. .+. ........+.|+|||+ +|+.... ...|+++|+.++. .. ..+ ........++.|+
T Consensus 253 ~lgt~~~~~~l---v~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 253 VMGKLQSEDVC---LYEEHNPLFSAFMYKAADTN-TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp ETTSCGGGCEE---EEECCCTTCEEEEEECTTSS-EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred ECCCCchhcEE---EEecCCCceEEEEEECCCCC-EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence 87652211111 111 2223466889999999 6665442 3468899998752 22 333 3344555666655
Q ss_pred cCCcEEEeeecCC--C--eEEEEEccCCCcccee-ecccccCCceEEEEecCCCceEEeeecCCc--EEEEeC
Q psy2305 211 SNGILLFSGARKD--C--EIICWDLRNPGCILHT-FPRQVSTNQRVYFDLTSCSNYLLSGNTNGD--LSIWNV 276 (334)
Q Consensus 211 ~~~~~l~~~~~~d--~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~--i~iwd~ 276 (334)
. |..|+..+..+ + .|..+|+... ..... +..+.....+..+.+. .+.++++...++. |.++++
T Consensus 329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 G-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp T-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred e-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 4 55444444133 3 5666666531 22222 2222222234455554 3445566666775 455565
No 284
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.68 E-value=6.1e-05 Score=67.11 Aligned_cols=207 Identities=10% Similarity=0.069 Sum_probs=113.5
Q ss_pred cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305 14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD 93 (334)
Q Consensus 14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd 93 (334)
..+++++.++.|.-+|..+++..-.+.......... .. ..+ ...+++ .+..+++++.|+.|.-+|
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~----~~---~~~------~~g~a~--~~~~v~~~t~dg~l~AlD 133 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRP----CC---DVV------NRGAAI--YGDKVFFGTLDASVVALN 133 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCC----SS---CSC------CCCCEE--ETTEEEEEETTTEEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCccccc----cc---ccC------CCccEE--ECCEEEEEeCCCEEEEEE
Confidence 345556654458889999998764332211100000 00 000 001111 344677778899999999
Q ss_pred CCCCeeeEEEcCcccccccccee-EEEEcC---CCC-EEEEee-------CCcEEEEEcCCCCCeeeeeccc---c----
Q psy2305 94 SVGGEIKATYRPYNQVDEVTHAY-SLAFSL---DGN-KIYAGF-------LSEVKIFSTDRPGRECVSRNLK---P---- 154 (334)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~---~~~-~l~~~~-------d~~i~i~d~~~~~~~~~~~~~~---~---- 154 (334)
.++|+.+...+........ .+. ...... +++ .++++. ++.|..+|..+ ++.+...+.. .
T Consensus 134 ~~TG~~~W~~~~~~~~~~~-~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t-G~~~W~~~~~~~~~~p~~ 211 (582)
T 1flg_A 134 KNTGKVVWKKKFADHGAGY-TMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT-GEEIWMRPFVEGHMGRLN 211 (582)
T ss_dssp SSSCCEEEEEECSCGGGTC-BCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT-CCEEEEEESSTTCEEEET
T ss_pred CCCCCEEeeecCCCCCcCc-ccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC-CCEEeecCCCcccccccc
Confidence 9999998776643321000 010 111111 233 455543 67899999887 5554432110 0
Q ss_pred ---------------c---------------ccccceEEEEEcCCCCcEEEEeec--------------------C----
Q psy2305 155 ---------------W---------------FRKNIVSAIAINPVHPDICALGTY--------------------S---- 180 (334)
Q Consensus 155 ---------------~---------------~~~~~v~~~~~~~~~~~~l~~~~~--------------------d---- 180 (334)
. +....-..++++|... +++.+.. |
T Consensus 212 ~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~ 290 (582)
T 1flg_A 212 GKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWARTAKGGNPHDYDSLYT 290 (582)
T ss_dssp TEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGGSCTTSCSTTCCCTTC
T ss_pred CcccccccccccccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCcccccCCCcccccCCccc
Confidence 0 0000112456777766 6666552 2
Q ss_pred CeEEEEECCCCCceEeecc--CC--------CCeEEEEEc-cCCc---EEEeeecCCCeEEEEEccCCCccceee
Q psy2305 181 KIIGLFSDSDGRPLFFLKG--HN--------GGITHLEFS-SNGI---LLFSGARKDCEIICWDLRNPGCILHTF 241 (334)
Q Consensus 181 g~i~i~d~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~~d~~i~iwd~~~~~~~~~~~ 241 (334)
+.|.-+|.++++.+-.++. |. .++. +... .+|+ .++.++ .+|.++++|.++ ++++..+
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~lw~~ 362 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD-RNGFFYVVDRSN-GKLQNAF 362 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC-TTSEEEEEETTT-CCEEEEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC-CCceEEEEECCC-CCEeccc
Confidence 6899999999998877643 22 1221 1221 4674 677888 899999999987 6655443
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.62 E-value=2.5e-05 Score=63.74 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=118.4
Q ss_pred cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC----CCE--EE-Eee----CCcEEEEEcCC
Q psy2305 74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD----GNK--IY-AGF----LSEVKIFSTDR 142 (334)
Q Consensus 74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~-~~~----d~~i~i~d~~~ 142 (334)
.|...+++.....+-+.+||+ +|+.+..+.. . .++.+..-|+ |+. ++ +.. +++|.+|+++.
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT-G------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEET-TSCEEEEECC-S------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred CCCccEEEEEcCCCCEEEEcC-CCcEEEEccC-C------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 345556666667788999999 8888888764 2 4556665553 222 33 332 37899998853
Q ss_pred CCCeeeeeccc-cc-ccc-cceEEEEE--cCC-CCcEEEEeecCCeEEEEECC-------CCCceEeeccCCCCeEEEEE
Q psy2305 143 PGRECVSRNLK-PW-FRK-NIVSAIAI--NPV-HPDICALGTYSKIIGLFSDS-------DGRPLFFLKGHNGGITHLEF 209 (334)
Q Consensus 143 ~~~~~~~~~~~-~~-~~~-~~v~~~~~--~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~ 209 (334)
....+...... .. ... ..+..+++ +|. +..++++...+|.+..|++. +.+.++++.. .+.+..+..
T Consensus 109 ~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcvv 187 (355)
T 3amr_A 109 KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAA 187 (355)
T ss_dssp TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEE
T ss_pred CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEE
Confidence 23334432100 00 111 55667777 774 44357777788999999983 2355666664 457888999
Q ss_pred ccCCcEEEeeecCCCeEEEEEccCC----CccceeecccccCCceEEEEe--cCCCc-eEEeee-cCCcEEEEeCC
Q psy2305 210 SSNGILLFSGARKDCEIICWDLRNP----GCILHTFPRQVSTNQRVYFDL--TSCSN-YLLSGN-TNGDLSIWNVN 277 (334)
Q Consensus 210 ~~~~~~l~~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~--s~~~~-~l~~~~-~dg~i~iwd~~ 277 (334)
.+....|+.+- ++.-|..++.+.. ...+..+........+..+++ .++++ ||++++ .++++.+||.+
T Consensus 188 Dd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 188 DDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99888999998 7866666664421 122323221111223445555 55655 666555 57799999997
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.59 E-value=0.00021 Score=60.62 Aligned_cols=188 Identities=11% Similarity=0.040 Sum_probs=118.6
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCC--Ceeeeecccc
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPG--RECVSRNLKP 154 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~--~~~~~~~~~~ 154 (334)
+|+.+. ...|+..++........+.... .+..++|++.+..|+.+. .+.|..+++.... ..... ..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~------~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~---~~ 154 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VI 154 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE---EE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccC------cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE---EE
Confidence 444443 4678888987665554444322 678999999777777554 6888888887311 11111 12
Q ss_pred cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC-CCeEEEEEccC
Q psy2305 155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK-DCEIICWDLRN 233 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-d~~i~iwd~~~ 233 (334)
.........+++.+.+.+++++-...+.|.+.++........+.........+++.|.+.+|+..... .+.|...++.
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d- 233 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 233 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-
Confidence 22334677899998555366666677899999987554444444344567899999976666665412 3678888776
Q ss_pred CCccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCC
Q psy2305 234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTS 279 (334)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 279 (334)
+.....+... .-.....+++++++..|+.+. ..+.|..+|+...
T Consensus 234 -G~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 234 -GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp -SCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -CCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 4333333221 234567789998777776654 4678999998764
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.57 E-value=9e-07 Score=80.59 Aligned_cols=198 Identities=12% Similarity=-0.065 Sum_probs=110.3
Q ss_pred ccceecCCCcEEEEe-eCCCcEEEEeCCC----CeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcC
Q psy2305 69 KTSSIDGFTSYFLCS-SMYAPIHLWDSVG----GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTD 141 (334)
Q Consensus 69 ~~~~~s~~~~~l~~~-~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~ 141 (334)
..++|++.+..|+.+ ...+.|+.+++.. ......+.. ... .+..|++.+.+..|+.+ . .+.|.++++.
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~--~~~---~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DIQ---APDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS--CC-----CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC--CCC---CcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 345557666555554 4457898888864 121111111 111 45678888665555544 3 7889999987
Q ss_pred CCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305 142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220 (334)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 220 (334)
. ..... ...........++++|.+..++++-... +.|..+++........+...-.....|+|+|++..|+.+.
T Consensus 484 g--~~~~~---l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 484 G--VKRKT---LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp S--CCEEE---ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred C--CceEE---EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence 3 33332 1222234467889999766244433222 6788888753322222222233456899999877666665
Q ss_pred cCCCeEEEEEccCCCccceeeccc-ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 221 RKDCEIICWDLRNPGCILHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
...+.|..+++.. .....+... ........+++..+ .++++....+.|..++..++
T Consensus 559 ~~~~~I~~~d~dG--~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 559 SKLHSISSIDVNG--GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp TTTTEEEEECSSS--SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred cCCCeEEEEccCC--CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 3677899999864 222333211 11122333444443 45555566788999998765
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.56 E-value=7.2e-05 Score=60.53 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=104.1
Q ss_pred ecccceecCCCcEEEEee-CCCcEEEEeCCCCeeeEEEcCccc---cccccceeEEEE---cCCCCEEEEee--------
Q psy2305 67 YPKTSSIDGFTSYFLCSS-MYAPIHLWDSVGGEIKATYRPYNQ---VDEVTHAYSLAF---SLDGNKIYAGF-------- 131 (334)
Q Consensus 67 ~~~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~---~~~~~~l~~~~-------- 131 (334)
.|.+..|++....|..++ ..++|..|+...+..... ....- ......+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 345556666444555544 789999999875544333 22110 011114689999 68887777532
Q ss_pred ------CCcEEEEEcC---CCCCeeeeecccc--cc-------cccceEEEEEcCCCCcEEEEeecC-CeEEEEECCCCC
Q psy2305 132 ------LSEVKIFSTD---RPGRECVSRNLKP--WF-------RKNIVSAIAINPVHPDICALGTYS-KIIGLFSDSDGR 192 (334)
Q Consensus 132 ------d~~i~i~d~~---~~~~~~~~~~~~~--~~-------~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~ 192 (334)
+..+..||+. + ++......+.- .+ .......++..++|+ ..++++.. +.|..++.. ++
T Consensus 93 g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pd-G~ 169 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSAD-GK 169 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTT-SC
T ss_pred ccccCCCCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCC-CC
Confidence 4678999988 5 44433222110 01 113588999999999 88888888 888888864 33
Q ss_pred ceEeec------cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305 193 PLFFLK------GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233 (334)
Q Consensus 193 ~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~ 233 (334)
.+..+. ......+.|+++|+|+.|++.. ..+.+..+|++.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~-~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG-GPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES-SSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc-CCCeEEEEcCCC
Confidence 333321 1122366899999999999998 699999999885
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=7.1e-05 Score=64.57 Aligned_cols=249 Identities=9% Similarity=0.066 Sum_probs=136.8
Q ss_pred ceeEEEEcC-CCcEEEEee-CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeee--ceeEEEEEEecccceecCCCc
Q psy2305 3 IEEDVDEAP-DGTCLLTNS-NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKE--GGIIYDYVWYPKTSSIDGFTS 78 (334)
Q Consensus 3 ~V~~~~~sp-~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~~~~ 78 (334)
....|+|+| ++..|+.+. ..+.|++.|..++.... ...... ......++|...-..++++++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~--------------l~~~~~~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS--------------PLNINTIPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE--------------EECCTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE--------------EEccCccccCCCcEEEEeecccccCCCCC
Confidence 356899999 455555554 44678889988877641 111110 112333333111111278998
Q ss_pred EEEEeeCCC-------cEEEEeCCC-Ceee-----EEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcC--
Q psy2305 79 YFLCSSMYA-------PIHLWDSVG-GEIK-----ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTD-- 141 (334)
Q Consensus 79 ~l~~~~~d~-------~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~-- 141 (334)
.|+++...+ .|.+.+... +... ..+.... ....++++|++..|+.+ . ++.|..+|+.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~------~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~ 279 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK------QCNGATIHPINGELYFNSYEKGQVFRLDLVDY 279 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES------CCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC------CceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence 666665443 266665433 2221 2222111 45688999966666544 4 7889999987
Q ss_pred -----CCCCe-----------eeeecccccccccceEEEEEcCCCCcEEEE-eecCCeEEEEECC--CCCc--eEeeccC
Q psy2305 142 -----RPGRE-----------CVSRNLKPWFRKNIVSAIAINPVHPDICAL-GTYSKIIGLFSDS--DGRP--LFFLKGH 200 (334)
Q Consensus 142 -----~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~--~~~~~~~ 200 (334)
+ +.. .... ...+.......++|+|+|+ .|+. -...+.|+.++.. .+.. ...+.+.
T Consensus 280 ~~~~~t-g~~~tp~~~~~~g~~~~l--~~~~~~~~p~~ia~~p~G~-~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 280 FKTIKN-GGSWDPIVKNNPNTFKQL--FTIADPSWEFQIFIHPTGK-YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHT-TCCCCCBGGGCTTTEEEE--EECSSSSCCEEEEECTTSS-EEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred cccccC-ceeeccccccccccccee--EecCCCCCceEEEEcCCCC-EEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 3 222 1110 0112234567999999998 5444 4567889986653 2221 1222211
Q ss_pred ---C------------CCeE-EEEEc-------cCCcEEEeeecCCCeEEEEEccCCCccceeecccc------------
Q psy2305 201 ---N------------GGIT-HLEFS-------SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV------------ 245 (334)
Q Consensus 201 ---~------------~~i~-~~~~~-------~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------ 245 (334)
. .... .+... ++|.++++=. ....|+.++.. +. +.++.+..
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~-~N~rIr~i~~~--G~-v~TiaG~g~~~~~~~~~~~G 431 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR-LNFCVRKVTPE--GI-VSTYAGRGASTSLADGNQWG 431 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEG-GGTEEEEECTT--CB-EEEEEESCTTHHHHHSCSCC
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEEC-CCCEEEEEeCC--CC-EEEEecccccccccCccccc
Confidence 1 1233 44444 4555544444 67888888843 43 34443220
Q ss_pred ----------cCCceEEEEecCC-CceEEeeecCCcEEEEeCCCC
Q psy2305 246 ----------STNQRVYFDLTSC-SNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 246 ----------~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~ 279 (334)
.-.....++++++ |.++++=..+.+|+.++++..
T Consensus 432 ~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp CCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred cCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 0123567888886 776666666789999998875
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.55 E-value=0.00044 Score=62.16 Aligned_cols=228 Identities=10% Similarity=0.010 Sum_probs=137.9
Q ss_pred cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE-EEEeeCCCcEEEE
Q psy2305 14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY-FLCSSMYAPIHLW 92 (334)
Q Consensus 14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~-l~~~~~d~~i~iw 92 (334)
.+|+.+ ..+.|+..++++.... ..+....-.....++| ++.+.. +.+-..++.|..+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~--------------~~~~~~~~~~~~~l~~-------d~~~~~lywtD~~~~~I~r~ 64 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNN--------------VAIPLTGVKEASALDF-------DVTDNRIYWTDISLKTISRA 64 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCE--------------EECCCCSCSCEEEEEE-------ETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcc--------------eEEEcCCCCceEEEEE-------ECCCCEEEEEECCCCeEEEE
Confidence 345544 4567999999876532 1111111133455555 555444 4455567889989
Q ss_pred eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305 93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH 170 (334)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (334)
++........+..... .+..+++.+.+..|+.+. .+.|.+.+++. ..... .....-.....+++.|..
T Consensus 65 ~~~g~~~~~v~~~g~~-----~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~---l~~~~l~~P~~iavdp~~ 134 (628)
T 4a0p_A 65 FMNGSALEHVVEFGLD-----YPEGMAVDWLGKNLYWADTGTNRIEVSKLDG--QHRQV---LVWKDLDSPRALALDPAE 134 (628)
T ss_dssp ETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETTS--TTCEE---EECSSCCCEEEEEEETTT
T ss_pred ECCCCCcEEEEeCCCC-----CcceEEEEeCCCEEEEEECCCCEEEEEecCC--CcEEE---EEeCCCCCcccEEEccCC
Confidence 8865433333332111 567899998777776553 68899999874 32221 122333457899999965
Q ss_pred CcEEEEee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCC
Q psy2305 171 PDICALGT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN 248 (334)
Q Consensus 171 ~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 248 (334)
. .|+... ..+.|...++..... ..+...-.....+++++++..|+.+....+.|..+|+.. .. ...+... ..
T Consensus 135 G-~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~-~~v~~~~--l~ 208 (628)
T 4a0p_A 135 G-FMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LN-REVIADD--LP 208 (628)
T ss_dssp T-EEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS-CEEEEEC--CS
T ss_pred C-eEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cc-eEEeecc--CC
Confidence 5 454443 357888888754433 333334456789999998887777764678899999875 22 2333322 23
Q ss_pred ceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 249 QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 249 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
....+++.. +.++++-...+.|...|..+++
T Consensus 209 ~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 209 HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 345666654 4444555557889999877764
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.51 E-value=0.00026 Score=57.96 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=117.9
Q ss_pred eeEEEEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcEEE
Q psy2305 4 EEDVDEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSYFL 81 (334)
Q Consensus 4 V~~~~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~ 81 (334)
+.+++|++.+..| .+-...+.|+.++..+..... ..+.. .-. .|..+++++ .+++++
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-------------~~~~~-~l~-------~p~glavd~~~g~ly~ 95 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-------------NVVVS-GLL-------SPDGLACDWLGEKLYW 95 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-------------EEEEE-CCS-------CCCEEEEETTTTEEEE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-------------EEEcC-CCC-------CccEEEEEcCCCeEEE
Confidence 4577888754444 444466788888877653210 01111 101 234455675 445555
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305 82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLKPWFRK 158 (334)
Q Consensus 82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (334)
+-...+.|.++++........+.. ... ....+++.|.+..|+.+. .+.|...+++ +..... .....-
T Consensus 96 ~d~~~~~I~~~~~dG~~~~~l~~~--~~~---~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~---~~~~~l 165 (318)
T 3sov_A 96 TDSETNRIEVSNLDGSLRKVLFWQ--ELD---QPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFI---IINSEI 165 (318)
T ss_dssp EETTTTEEEEEETTSCSCEEEECS--SCS---SEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEE---EECSSC
T ss_pred EECCCCEEEEEECCCCcEEEEEeC--CCC---CccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEE---EEECCC
Confidence 555667899999864332222221 111 568999999766666543 4678888776 433221 112223
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~ 238 (334)
.....++++|++..+.++-...+.|..+|+........+.+.......+++.. +..+.+-. ..+.|..++..+ ++..
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~-~~~~V~~~~~~~-G~~~ 242 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDW-STHSILACNKYT-GEGL 242 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEET-TTTEEEEEETTT-CCSC
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEec-CCCeEEEEECCC-CCce
Confidence 45689999997773455555678999999864333222332344566787753 33444443 678899998866 5444
Q ss_pred eeec
Q psy2305 239 HTFP 242 (334)
Q Consensus 239 ~~~~ 242 (334)
..+.
T Consensus 243 ~~i~ 246 (318)
T 3sov_A 243 REIH 246 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 292
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=7.9e-06 Score=74.17 Aligned_cols=232 Identities=9% Similarity=0.001 Sum_probs=124.4
Q ss_pred cceecC-CCcEEEEeeCCC-----------cEEEEeCCCCeeeE--EEcCccccccccceeEEEEcCCCCEEEEee--CC
Q psy2305 70 TSSIDG-FTSYFLCSSMYA-----------PIHLWDSVGGEIKA--TYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LS 133 (334)
Q Consensus 70 ~~~~s~-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~ 133 (334)
..++.+ ++++++.|+.+. .+.+||..+++... .+... +. ....++++..++++++.|+ +.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-~~---~~~~~~~~~~~g~lyv~GG~~~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-HD---MFCPGISMDGNGQIVVTGGNDAK 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-CC---CSSCEEEECTTSCEEEECSSSTT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-CC---CccccccCCCCCCEEEeCCCCCC
Confidence 345566 888888887542 57899998876432 22111 10 0334678889999998886 56
Q ss_pred cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-cC-----CeEEEEECCCCCceEee----ccCCCC
Q psy2305 134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YS-----KIIGLFSDSDGRPLFFL----KGHNGG 203 (334)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~ 203 (334)
.+.+||..+ . .....+ .+.. ...-.+++..++++ +++.|+ .+ ..+.+||..+++-...- ......
T Consensus 266 ~v~~yd~~t-~-~W~~~~-~~~~-~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~ 340 (656)
T 1k3i_A 266 KTSLYDSSS-D-SWIPGP-DMQV-ARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 340 (656)
T ss_dssp CEEEEEGGG-T-EEEECC-CCSS-CCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred ceEEecCcC-C-ceeECC-CCCc-cccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccc
Confidence 899999985 2 222111 1111 12223556677888 888888 34 46999998776422210 000000
Q ss_pred eEEEEEccCCcEEEeeec--------CCCeEEEEEccCCCccceeeccccc-------CCceEEEEec-CCCceEEeeec
Q psy2305 204 ITHLEFSSNGILLFSGAR--------KDCEIICWDLRNPGCILHTFPRQVS-------TNQRVYFDLT-SCSNYLLSGNT 267 (334)
Q Consensus 204 i~~~~~~~~~~~l~~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~s-~~~~~l~~~~~ 267 (334)
-....+..+++.++.++. ....+..||.... ........... .....++.|. .++++++.|+.
T Consensus 341 ~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 341 DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cccceeecCCceEEEECCCCcEEEecCccceeeeecCCc-ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 000112234444444431 1345778888763 21221111111 1122334443 37888888875
Q ss_pred CC-----------cEEEEeCCCCCCCCCCCccccccccc--eecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305 268 NG-----------DLSIWNVNTSNLPSSPYEESVQEPLY--KFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ 328 (334)
Q Consensus 268 dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d 328 (334)
++ .+.+||..+... ..+. .+. ....-.+++. .|++ ++++.||.+
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W----------~~~~~~~mp-~~R~~~~~~~--l~~g----~i~v~GG~~ 476 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPN----------TVFASNGLY-FARTFHTSVV--LPDG----STFITGGQR 476 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCE----------EEECTTCCS-SCCBSCEEEE--CTTS----CEEEECCBS
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCe----------eEEccCCCC-CCcccCCeEE--CCCC----CEEEECCcc
Confidence 43 577888776421 1111 111 1112234566 7899 999999865
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.46 E-value=0.00022 Score=65.67 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=112.1
Q ss_pred ceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EE
Q psy2305 3 IEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YF 80 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l 80 (334)
.+..|+|++.+..|+ +-...+.|+.+++....... .....+.. .. ..|..+++++.++ ++
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~----------~~~~vi~~-~l-------~~P~GLAvD~~~~~LY 486 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS----------SYDTVISR-DI-------QAPDGLAVDWIHSNIY 486 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEECS-SC-------SCCCEEEEETTTTEEE
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc----------ceeEEEec-CC-------CCcceeeeeecCCcEE
Confidence 456788887544444 44456778888876532100 00011110 00 1344566676664 44
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--C-CcEEEEEcCCCCCeeeeeccccccc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--L-SEVKIFSTDRPGRECVSRNLKPWFR 157 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (334)
++-...+.|.+.++........+..... ....|++.|.+.+|+.+. . +.|...+++ +..... .....
T Consensus 487 ~tD~~~~~I~v~~ldG~~~~~l~~~~l~-----~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~---lv~~~ 556 (791)
T 3m0c_C 487 WTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYS---LVTEN 556 (791)
T ss_dssp EEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEE---EECSS
T ss_pred EEecCCCeEEEEeCCCCeEEEEEeCCCC-----CcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEE---EEeCC
Confidence 5555677899999864433333322111 578999999876676543 3 678888887 443332 12233
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~ 233 (334)
-.....|++++.+..++++-...+.|..+++........+.. .-....+|++. +..|+.+....+.|...|..+
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 356889999987772444445567899999864443333332 12234566663 335655553667888887655
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.44 E-value=0.00057 Score=61.31 Aligned_cols=225 Identities=13% Similarity=-0.019 Sum_probs=124.2
Q ss_pred CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe-eCCCcEEEEeCCCCee
Q psy2305 21 NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS-SMYAPIHLWDSVGGEI 99 (334)
Q Consensus 21 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~ 99 (334)
....|+..++...... ..+..........++| ++.+..|..+ ...+.|..+++.....
T Consensus 16 ~~~~I~~i~~~~~~~~--------------~~~~~~~~~~~~~ld~-------~~~~~~ly~sD~~~~~I~r~~~~g~~~ 74 (619)
T 3s94_A 16 NRRDLRLVDATNGKEN--------------ATIVVGGLEDAAAVDF-------VFSHGLIYWSDVSEEAIKRTEFNKTES 74 (619)
T ss_dssp CSSBEEEECCC-----------------------CBCCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEEC-----
T ss_pred ccccEEEEeCCCCcce--------------EEEEEcCCCceEEEEE-------EeCCCEEEEEECCCCeEEEEEccCCCc
Confidence 3467888888765311 0111112233455555 5555555544 4467888888865432
Q ss_pred -eEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEE
Q psy2305 100 -KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL 176 (334)
Q Consensus 100 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 176 (334)
...+...-. .+..+++.+.+..|+.+. .+.|.+.+++ +..... .....-.....+++.|.+. .|+.
T Consensus 75 ~~~v~~~~~~-----~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d--G~~~~~---l~~~~l~~P~~Iavdp~~g-~ly~ 143 (619)
T 3s94_A 75 VQNVVVSGLL-----SPDGLACDWLGEKLYWTDSETNRIEVSNLD--GSLRKV---LFWQELDQPRAIALDPSSG-FMYW 143 (619)
T ss_dssp CEEEECSSCS-----CEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEE---EECSSCSCCCCEEEETTTT-EEEE
T ss_pred eEEEEeCCCC-----CcCeEEEEecCCEEEEEeCCCCEEEEEECC--CCCEEE---EEeCCCCCCceEEEecCCC-eEEE
Confidence 222222111 678999999777777553 7899999998 433322 1223334567899999766 4544
Q ss_pred ee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEE
Q psy2305 177 GT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD 254 (334)
Q Consensus 177 ~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 254 (334)
.. ..+.|...++.-..........-.....+++++++..|+.+....+.|...|+.. .....+... .......++
T Consensus 144 tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--~~~~~~~~~-~~~~P~gi~ 220 (619)
T 3s94_A 144 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKG-SLPHPFALT 220 (619)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--CEEC----------CCCEE
T ss_pred eccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--CccEEEEeC-CCCCceEEE
Confidence 43 2467888887533332223333456789999998777777764567788888864 222222211 111223455
Q ss_pred ecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305 255 LTSCSNYLLSGNTNGDLSIWNVNTSNL 281 (334)
Q Consensus 255 ~s~~~~~l~~~~~dg~i~iwd~~~~~~ 281 (334)
+..+ ..+++-...+.|...|..+++.
T Consensus 221 ~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 221 LFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp ESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 5554 4444555678899999877643
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.44 E-value=0.00036 Score=56.05 Aligned_cols=197 Identities=9% Similarity=0.089 Sum_probs=126.8
Q ss_pred ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305 73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~ 152 (334)
.+|..+.+|.-. ...+.++|+++.+.++.+...+ .|.-=.|-.+ +.|+-..+..|.-|++.....+.+....
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~e------~VvfWkWis~-~~L~lVT~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS------CEEEEEECSS-SEEEEEESSEEEEEESSTTCCCEEEEEC
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecCC------ccEEEEecCC-CeEEEEcCCcEEEEcccCCCCCceeeec
Confidence 377888887765 6789999999999888877643 5666666654 4566666789999999853333331110
Q ss_pred cccccccceEEEEEcCCCCcEEEEee-------cCCeEEEEECCCCCceEeeccCCCCeEEEEEccC---CcEEEeeec-
Q psy2305 153 KPWFRKNIVSAIAINPVHPDICALGT-------YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN---GILLFSGAR- 221 (334)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~- 221 (334)
...-....|..-..+++.+ +++..+ -.|.+.+|..+ .+..+.+++|.+.-..+...-+ .+.++.+.+
T Consensus 146 ~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp CGGGTTCEEEEEEECTTSC-EEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred chhcccceEEEEEECCCCC-EEEEEeEeccCCccceeEEEEeec-ccccceeeeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 0111245677888899999 665433 24788999975 4456778888654433333211 124444442
Q ss_pred -CCCeEEEEEccCC--Cccce-------eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 222 -KDCEIICWDLRNP--GCILH-------TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 222 -~d~~i~iwd~~~~--~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
..+.+.+.++..+ +.+.. .+..........++..|+.-..++.-+.-|.|++||++++
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg 291 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 291 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC
Confidence 1268999998543 22111 0112223455677888888888888899999999999999
No 296
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.41 E-value=0.00054 Score=57.00 Aligned_cols=232 Identities=11% Similarity=0.081 Sum_probs=116.1
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC----C
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF----T 77 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~----~ 77 (334)
+..+.++|.|+|++++ +..+|.|++++ .++... +... ... .........+++ +|+ +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~-~~~~--------~v~-~~g~~~p~gia~-------~pdf~~~g 90 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLST-YAEL--------SVY-HRGESGLLGLAL-------HPRFPQEP 90 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEE-EEEC--------CCC-CSTTCSEEEEEE-------CTTTTTSC
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccE-eecc--------eEe-ecCCCCceeEEE-------CCCCCCCC
Confidence 4467899999998554 55679999998 333210 0000 000 001223445555 666 4
Q ss_pred cEEEEeeCC-----CcEEEEeCCCCee------eEEEcCccccccccceeEEEEcCCCCEEEEeeC--------------
Q psy2305 78 SYFLCSSMY-----APIHLWDSVGGEI------KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-------------- 132 (334)
Q Consensus 78 ~~l~~~~~d-----~~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------------- 132 (334)
.+.++-... +.|..++...+.. +..+.......+ ....++|.|||.+.++..+
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~ 168 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVTTGEVYERELAQDLASLG 168 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEECCCTTCGGGGGCTTCSS
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEEECCCCCCccccCCCCCc
Confidence 444443322 5677887764321 111221001011 3468999999976665322
Q ss_pred CcEEEEEcCCCCCeeee----------ecccccccccceEEEEEcC-CCCcEEEEeecCCe--------EEEEECCCCC-
Q psy2305 133 SEVKIFSTDRPGRECVS----------RNLKPWFRKNIVSAIAINP-VHPDICALGTYSKI--------IGLFSDSDGR- 192 (334)
Q Consensus 133 ~~i~i~d~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~--------i~i~d~~~~~- 192 (334)
+.|.-++.+ +..... ......++ .....++|+| ++. ++++-..... |.+.. .+.
T Consensus 169 g~I~ri~~d--G~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~--~G~n 242 (352)
T 2ism_A 169 GKILRLTPE--GEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIV--PGGN 242 (352)
T ss_dssp SEEEEECTT--SSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCC-EEEEEECC------CCCEEEEEC--TTCB
T ss_pred eEEEEEcCC--CCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEec--cCCc
Confidence 344444443 311000 00011222 2356889999 565 5554332222 33332 221
Q ss_pred -----------------ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc-----ceeecccccCCce
Q psy2305 193 -----------------PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI-----LHTFPRQVSTNQR 250 (334)
Q Consensus 193 -----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~ 250 (334)
++..+. +......++| .+|..+++.- ..+.|...++...+.. ...+.. ....+
T Consensus 243 yGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~-~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp 317 (352)
T 2ism_A 243 YGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGL-RGQALLRLVLEGERGRWRVLRVETALS--GFGRL 317 (352)
T ss_dssp CCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEET-TTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCE
T ss_pred CCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEEC-CCCEEEEEEECCCCcceeecchheecc--cCCCe
Confidence 223332 2334567888 4676665555 6778888887752221 112211 23457
Q ss_pred EEEEecCCCceEEeee
Q psy2305 251 VYFDLTSCSNYLLSGN 266 (334)
Q Consensus 251 ~~~~~s~~~~~l~~~~ 266 (334)
..+++.|||.++++..
T Consensus 318 ~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 318 REVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEECTTSCEEEEEC
T ss_pred eEEEECCCCcEEEEEe
Confidence 7888999997766543
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.35 E-value=0.0003 Score=58.17 Aligned_cols=197 Identities=10% Similarity=0.030 Sum_probs=112.6
Q ss_pred ceecCCCcEEEEee------------CCCcEEEEeCCCCe-eeEEEcCcc--ccccccceeEEEEcC--CCC-EEEEe-e
Q psy2305 71 SSIDGFTSYFLCSS------------MYAPIHLWDSVGGE-IKATYRPYN--QVDEVTHAYSLAFSL--DGN-KIYAG-F 131 (334)
Q Consensus 71 ~~~s~~~~~l~~~~------------~d~~i~iwd~~~~~-~~~~~~~~~--~~~~~~~v~~~~~~~--~~~-~l~~~-~ 131 (334)
+.+.|+|..+++++ .+|.|.++|.++.. ....+.... ..........+.+.+ ++. +|++. .
T Consensus 55 i~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh 134 (355)
T 3sre_A 55 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH 134 (355)
T ss_dssp EEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred eEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence 34467776655552 68899999987321 122222211 001112567787766 453 45443 2
Q ss_pred ---CCcEEEEEcCCCCCeeeeecccccc-cccceEEEEEcCCCCcEEEEee-----------------cCCeEEEEECCC
Q psy2305 132 ---LSEVKIFSTDRPGRECVSRNLKPWF-RKNIVSAIAINPVHPDICALGT-----------------YSKIIGLFSDSD 190 (334)
Q Consensus 132 ---d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~ 190 (334)
+.+|.+|+++..+....... ...+ .-...+.+.+.++|. +.++.. ..|.|..+|.
T Consensus 135 ~~~~s~ielf~~d~~~~~~~~~~-~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-- 210 (355)
T 3sre_A 135 PGSSSTVEVFKFQEEEKSLLHLK-TIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-- 210 (355)
T ss_dssp STTCCEEEEEEEETTTTEEEEEE-EECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred CCCCCeEEEEEEECCCCEEEEEe-ccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence 46888988876444332211 1222 224678999999997 666543 1255666664
Q ss_pred CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc--eeecccccCCceEEEEecC-CCceEEeeec
Q psy2305 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTS-CSNYLLSGNT 267 (334)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~ 267 (334)
++ +..+...-...+.++|+||++.|+++....+.|..|++...+... ..+. .....-.+++.+ +|++.+++..
T Consensus 211 ~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEES
T ss_pred Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecC
Confidence 33 233322334568999999999888776467899999997533321 2221 134455678888 5888776643
Q ss_pred C-CcEEEEe
Q psy2305 268 N-GDLSIWN 275 (334)
Q Consensus 268 d-g~i~iwd 275 (334)
+ +.|..|+
T Consensus 287 ~g~~v~~~~ 295 (355)
T 3sre_A 287 NGMRIFFYD 295 (355)
T ss_dssp CHHHHHSCC
T ss_pred CceEEEEEC
Confidence 3 3444444
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.34 E-value=0.0015 Score=58.74 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=117.7
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+|+.+ ..+.|+..++.+......+... ... .+..++|++.+..|+.+. ++.|..++++. ..... ....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~---~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g--~~~~~---v~~~ 77 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLT-GVK---EASALDFDVTDNRIYWTDISLKTISRAFMNG--SALEH---VVEF 77 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCC-SCS---CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECS
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcC-CCC---ceEEEEEECCCCEEEEEECCCCeEEEEECCC--CCcEE---EEeC
Confidence 44444 3567899998765443333221 111 578999999877777554 78899988874 32221 1222
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec-CCCeEEEEEccCCC
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KDCEIICWDLRNPG 235 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~iwd~~~~~ 235 (334)
.......+++.+.+.+++++-...+.|.+.++........+...-.....+++.|....|+.... ..+.|...++. +
T Consensus 78 g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G 155 (628)
T 4a0p_A 78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--G 155 (628)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--S
T ss_pred CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--C
Confidence 22456789998876646666666789999998644332223234456789999996556665541 24567777776 4
Q ss_pred ccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCC
Q psy2305 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTS 279 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 279 (334)
.....+.. .......++++++++.|+.+. ..+.|..+++...
T Consensus 156 ~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 156 SERTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp CSCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 33344332 244567789999776666554 4678999998764
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.33 E-value=0.00027 Score=57.25 Aligned_cols=213 Identities=13% Similarity=0.038 Sum_probs=119.2
Q ss_pred eEEEEcCCCcEEEEee-CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305 5 EDVDEAPDGTCLLTNS-NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS 83 (334)
Q Consensus 5 ~~~~~sp~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~ 83 (334)
.+++|.+....|+.++ ..++|..|+...+..... ..+... ..+........+.|. .-.|+++++++.
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s-------~~g~~~~~~sGl~~~----~~D~~grL~vv~ 83 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS-------SNGDGEQQMSGLSLL----THDNSKRLFAVM 83 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC-------CSSCCSEEEEEEEES----SSSSCCEEEEEE
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc-------ccCCCcceeeEEEEe----ccCCCCcEEEEE
Confidence 4678987555565555 789999999876654310 000000 000011123444441 004677777754
Q ss_pred e-------------CCCcEEEEeCC---CCeeeEEEcCccccc--------cccceeEEEEcCCCCEEEEee-C-CcEEE
Q psy2305 84 S-------------MYAPIHLWDSV---GGEIKATYRPYNQVD--------EVTHAYSLAFSLDGNKIYAGF-L-SEVKI 137 (334)
Q Consensus 84 ~-------------~d~~i~iwd~~---~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~-d-~~i~i 137 (334)
. .+..|..+|+. +++.+.......... ....+..++..++|+..++++ . +.|..
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence 3 25679999998 787766554321111 112578999999999888776 6 77666
Q ss_pred EEcCCCCCeeeeecccc--cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEeec--cC---CCCeEEE-E
Q psy2305 138 FSTDRPGRECVSRNLKP--WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFLK--GH---NGGITHL-E 208 (334)
Q Consensus 138 ~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~--~~---~~~i~~~-~ 208 (334)
.+.+ ++......+.. .......+.++++|+|. .|++....|.|..+|+.+... ...+. +. -.....| .
T Consensus 164 V~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp 240 (334)
T 2p9w_A 164 VSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVT 240 (334)
T ss_dssp ECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEE
T ss_pred EeCC--CCEEeeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccc
Confidence 6655 44333211111 11223467999999999 666665599999999885332 01111 21 1223443 3
Q ss_pred EccCCcEEEeeecCCCeEEEEEcc
Q psy2305 209 FSSNGILLFSGARKDCEIICWDLR 232 (334)
Q Consensus 209 ~~~~~~~l~~~~~~d~~i~iwd~~ 232 (334)
--.+|+.|+++....+.+.+.+..
T Consensus 241 ~~~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 241 VPVGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEETTEEEEEEEETTEEEEEECSS
T ss_pred cccCCEEEEEEcCCCCEEEEECCC
Confidence 334777755544255555555443
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.32 E-value=0.00039 Score=57.82 Aligned_cols=239 Identities=12% Similarity=-0.042 Sum_probs=118.6
Q ss_pred cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC---CCEEEEee--C-----CcEEE
Q psy2305 68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD---GNKIYAGF--L-----SEVKI 137 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--d-----~~i~i 137 (334)
|..+++.|+|+++++ ..++.|.+++ +++...................++|+|+ +..|+++. . +.|..
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 344666889985554 5669999998 4443211111000111126789999998 55565443 2 67888
Q ss_pred EEcCCCCCeeeeecc--ccc---ccccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCC--------
Q psy2305 138 FSTDRPGRECVSRNL--KPW---FRKNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDG-------- 191 (334)
Q Consensus 138 ~d~~~~~~~~~~~~~--~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-------- 191 (334)
++... +.......+ .+. ........++|.|+|. ++++.+. .|.|.-++....
T Consensus 110 ~~~~~-~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 110 LRHLG-ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEECS-SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEeCC-CCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 88763 211100000 111 1112346899999997 6665332 256777765420
Q ss_pred ----CceEee-ccCCCCeEEEEEcc-CCcEEEeeecCCCeE------EEEEccCCC-----------------ccceeec
Q psy2305 192 ----RPLFFL-KGHNGGITHLEFSS-NGILLFSGARKDCEI------ICWDLRNPG-----------------CILHTFP 242 (334)
Q Consensus 192 ----~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i------~iwd~~~~~-----------------~~~~~~~ 242 (334)
.....+ .++. ....++|+| +|+++++-. ....+ .+.-+...+ .+...+.
T Consensus 188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 011111 2222 246789999 666554433 33321 233232211 0111111
Q ss_pred ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeE
Q psy2305 243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVAD 322 (334)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l 322 (334)
.......++| .+|.++++.-..+.|...+++....... ......+......+.++++ .||| .++
T Consensus 266 ---~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~------~~~~~~~~~~~~rp~~v~~--~pdG----~ly 329 (352)
T 2ism_A 266 ---QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR------VLRVETALSGFGRLREVQV--GPDG----ALY 329 (352)
T ss_dssp ---TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE------EEEEEEEEESSCCEEEEEE--CTTS----CEE
T ss_pred ---CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee------ecchheecccCCCeeEEEE--CCCC----cEE
Confidence 1123345666 4666666655567787777765321000 0001122122346889999 9999 766
Q ss_pred Eee-ecce
Q psy2305 323 ATC-SGQI 329 (334)
Q Consensus 323 ~t~-~~d~ 329 (334)
++. +.+|
T Consensus 330 v~~~~~~g 337 (352)
T 2ism_A 330 VTTSNRDG 337 (352)
T ss_dssp EEECSTTT
T ss_pred EEEeCCCC
Confidence 554 3344
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.28 E-value=0.0012 Score=54.98 Aligned_cols=234 Identities=12% Similarity=-0.016 Sum_probs=119.8
Q ss_pred cccceecCCCcEEEEeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEEEcCC---CCEEEEee-C--------Cc
Q psy2305 68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLAFSLD---GNKIYAGF-L--------SE 134 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-d--------~~ 134 (334)
|..+++.|+|++++ +..++.|.+++ .+++ .+..+... .........|+++|+ +..|+++. . +.
T Consensus 31 P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~--~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 31 PWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVA--NVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCC--CSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeecccee--ecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34456688998555 45669999997 4554 22222110 001126789999998 55555432 2 56
Q ss_pred EEEEEcCCCCCeeeeec-c--ccc-ccccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCC------
Q psy2305 135 VKIFSTDRPGRECVSRN-L--KPW-FRKNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDG------ 191 (334)
Q Consensus 135 i~i~d~~~~~~~~~~~~-~--~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------ 191 (334)
|..|+.......+.... + .+. ........++|.|+|. ++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 77777764210111000 0 011 1112346799999998 6665332 256666665321
Q ss_pred --CceEeeccCCCCeEEEEEcc-CCcEEEeeecCCC--eEEEEEccCCC-----------------ccceeecccccCCc
Q psy2305 192 --RPLFFLKGHNGGITHLEFSS-NGILLFSGARKDC--EIICWDLRNPG-----------------CILHTFPRQVSTNQ 249 (334)
Q Consensus 192 --~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~--~i~iwd~~~~~-----------------~~~~~~~~~~~~~~ 249 (334)
.....-.++.. ...++|+| +|+++++-...+. .|.+. .... .++..+. .....
T Consensus 186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~a 260 (354)
T 3a9g_A 186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG--SETWA 260 (354)
T ss_dssp STTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCC
T ss_pred CCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC--CCCcC
Confidence 01111123433 45899999 6665544331121 23332 2111 1111110 01234
Q ss_pred eEEEEec-------CCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee-cccccccceeeeccCCCcccceee
Q psy2305 250 RVYFDLT-------SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF-SAHQDCTNGVRWKHHKFERDLLVA 321 (334)
Q Consensus 250 ~~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~s~~~~~~~~~ 321 (334)
...++|. .+|.++++.-..+.|...++...... .....+ ......+.++++ .||| .+
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~---------~~~~~~~~~~~~rp~~v~~--~pDG----~l 325 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV---------RKISTFFKNVFGRLRDVVI--DDDG----GI 325 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE---------EEEEEECTTTSCCEEEEEE--CTTS----CE
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc---------cceeeeccCCCCCeeEEEE--CCCC----cE
Confidence 5566663 46777776666778888887753100 111122 222346889999 9999 77
Q ss_pred EEeee
Q psy2305 322 DATCS 326 (334)
Q Consensus 322 l~t~~ 326 (334)
.++..
T Consensus 326 yv~~~ 330 (354)
T 3a9g_A 326 LISTS 330 (354)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66654
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.27 E-value=0.0021 Score=57.71 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=92.4
Q ss_pred CceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 2 DIEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
.....+++.+.+..|+ +-...+.|.+.+++..... .+....- -.|..++++|.+..|
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~---------------~l~~~~l-------~~P~~Iavdp~~g~l 141 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK---------------VLFWQEL-------DQPRAIALDPSSGFM 141 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------EEECSSC-------SCCCCEEEETTTTEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE---------------EEEeCCC-------CCCceEEEecCCCeE
Confidence 3467889998555444 4456789999998865532 1211111 136677788875555
Q ss_pred EEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 81 LCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 81 ~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
..+.. .+.|...++. |.....+.... . .....+++++++..|+.+. .+.|..+|++ +..... ...+
T Consensus 142 y~tD~g~~~~I~r~~~d-G~~~~~l~~~~-~---~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~---~~~~ 211 (619)
T 3s94_A 142 YWTDWGEVPKIERAGMD-GSSRFIIINSE-I---YWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQA---VVKG 211 (619)
T ss_dssp EEEECSSSCEEEEEETT-SCSCEEEECSS-C---SSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC--------
T ss_pred EEeccCCCCEEEEEECC-CCceEEEEeCC-C---CCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEE---EEeC
Confidence 55442 3566666764 43333332111 1 1678999999888787664 6788888887 433322 1121
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL 194 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 194 (334)
......++++..+ . ++++-...+.|...|..+++..
T Consensus 212 ~~~~P~gi~~~~~-~-ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 212 SLPHPFALTLFED-I-LYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp ----CCCEEESSS-E-EEEECTTTCSEEEEESSSCCCC
T ss_pred CCCCceEEEEeCC-E-EEEecCCCCEEEEEECCCCccc
Confidence 1222346677655 3 6666666788999888776543
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.27 E-value=0.0012 Score=54.83 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=118.8
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC----C
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF----T 77 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~----~ 77 (334)
+..+.++|.|+|++ +++..+|.|++++. .++ . .+... . ...........+++ +|+ +
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~-~-~~~~~--------~-v~~~g~~g~~gia~-------~pdf~~~g 88 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGK-K-LVASF--------D-VANVGEAGLLGLAL-------HPEFPKKS 88 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECS-SCE-E-EEEEC--------C-CCCSTTCSEEEEEE-------CTTTTTSC
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCc-e-Eeecc--------c-eeecCCCceeeEEe-------CCCCCcCC
Confidence 45678999999984 45566799999973 333 2 00000 0 00011133555555 555 4
Q ss_pred cEEEEeeC---C----CcEEEEeCCCC--e---e--e-EEEcC-ccccccccceeEEEEcCCCCEEEEeeC---------
Q psy2305 78 SYFLCSSM---Y----APIHLWDSVGG--E---I--K-ATYRP-YNQVDEVTHAYSLAFSLDGNKIYAGFL--------- 132 (334)
Q Consensus 78 ~~l~~~~~---d----~~i~iwd~~~~--~---~--~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~d--------- 132 (334)
.+.++-+. + ..|..|+...+ . . + ..+.. ..| ....++|.|||.+.++..+
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h-----~~~~l~~~pDG~Lyvt~G~~~~~~~~~d 163 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH-----NGGRIRFGPDGMLYITTGDAADPRLAQD 163 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC-----CCCCEEECTTSCEEEECCCTTCGGGGTC
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc-----CCceEEECCCCcEEEEECCCCCCccccC
Confidence 44444332 3 56777776543 1 1 1 11221 112 3468999999986665332
Q ss_pred -----CcEEEEEcCCCCCeee-----eecccccccccceEEEEEcC-CCCcEEEEeecCC---eEEEEECCC--------
Q psy2305 133 -----SEVKIFSTDRPGRECV-----SRNLKPWFRKNIVSAIAINP-VHPDICALGTYSK---IIGLFSDSD-------- 190 (334)
Q Consensus 133 -----~~i~i~d~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg---~i~i~d~~~-------- 190 (334)
+.|.-++.+ +.... ...+...++. ....++|+| ++. ++++-.... .|.+...-.
T Consensus 164 ~~~~~G~I~ri~~d--G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (354)
T 3a9g_A 164 LSSLAGKILRVDEE--GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLAT 239 (354)
T ss_dssp TTCCSSEEEEECTT--SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCC
T ss_pred CCCCCeEEEEEcCC--CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCccc
Confidence 334444443 32100 0000122332 346899999 565 555432221 244332110
Q ss_pred --------CCceEeeccCCCCeEEEEEc-------cCCcEEEeeecCCCeEEEEEccCCCccc--eeecccccCCceEEE
Q psy2305 191 --------GRPLFFLKGHNGGITHLEFS-------SNGILLFSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYF 253 (334)
Q Consensus 191 --------~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~ 253 (334)
..++..+.........++|. .+|+++++.- ..+.|...++...+... ..+... ....+..+
T Consensus 240 g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~-~~~~v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v 317 (354)
T 3a9g_A 240 GKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL-RGSMLAAVNFGDNMEVRKISTFFKN-VFGRLRDV 317 (354)
T ss_dssp SCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET-TTTEEEEEEECGGGCEEEEEEECTT-TSCCEEEE
T ss_pred CCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc-CCCEEEEEEECCCCcccceeeeccC-CCCCeeEE
Confidence 01223331123457788883 4676666655 67888888887522221 122111 13457788
Q ss_pred EecCCCceEEeee
Q psy2305 254 DLTSCSNYLLSGN 266 (334)
Q Consensus 254 ~~s~~~~~l~~~~ 266 (334)
++.|||.++++..
T Consensus 318 ~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 318 VIDDDGGILISTS 330 (354)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 8999997666553
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.24 E-value=0.0015 Score=54.73 Aligned_cols=197 Identities=9% Similarity=0.089 Sum_probs=127.7
Q ss_pred ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305 73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~ 152 (334)
.+|..+.+|.=. ..++.++|+++.+.++.+...+ .|.-=.|-.+ +.|+...+..|.-|++.....+.+....
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------~VvfWkWis~-~~l~lVT~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEEEET-TEEEEECSSEEEEEESSSSCCCEEEEEC
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC------CceEEEecCC-CeEEEEcCCeeEEecccCCCCchhheec
Confidence 377888877765 6789999999999888877544 4555556544 4566667889999999753333331110
Q ss_pred cccccccceEEEEEcCCCCcEEEEee-------cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC---cEEEeeec-
Q psy2305 153 KPWFRKNIVSAIAINPVHPDICALGT-------YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG---ILLFSGAR- 221 (334)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~- 221 (334)
...-....|..-..+++.+ +++..+ -.|.+.+|..+ .+..+.+.+|.+.-..+...-+. +.++.+.+
T Consensus 145 ~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp CGGGTTCEEEEEEECTTSS-EEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred chhcccceEEEEEECCCCC-eEEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 0111245677888899999 665432 34788999975 44567788886655444443221 24454542
Q ss_pred -CCCeEEEEEccCC--Cccce-------eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 222 -KDCEIICWDLRNP--GCILH-------TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 222 -~d~~i~iwd~~~~--~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
..+.+.|.++..+ +.+.. .+..........++..|+.-..++..+.-|.|++||++++
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence 1278999998643 11111 1112222445677888998888888899999999999998
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.24 E-value=1.3e-05 Score=72.96 Aligned_cols=182 Identities=10% Similarity=0.005 Sum_probs=106.6
Q ss_pred CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCC--Ceeeeecccccccccce
Q psy2305 86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPG--RECVSRNLKPWFRKNIV 161 (334)
Q Consensus 86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v 161 (334)
.+.|+..++.+.+....+.... .+..++|.+.+..|+.+. .+.|+.+++.... ..... .........
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~------~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~---~i~~~~~~P 455 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VISRDIQAP 455 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCT------TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC---BCCSCC--C
T ss_pred ccceEEEeCCCCcceeeeccCc------ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE---EEeCCCCCc
Confidence 3567888877655443333221 567899999877777664 6889999987310 11111 111112235
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC-CeEEEEEccCCCcccee
Q psy2305 162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD-CEIICWDLRNPGCILHT 240 (334)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~iwd~~~~~~~~~~ 240 (334)
..|++.+.+.+++++-...+.|.++++........+.........++++|.+.+|+.+.... +.|..+++.. .....
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~ 533 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYS 533 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeE
Confidence 57888865553556556678999999865443333332234457889999766666554122 6777777653 32333
Q ss_pred ecccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCC
Q psy2305 241 FPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTS 279 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~ 279 (334)
+... .......++|+|++..|+.+ ...+.|..+++...
T Consensus 534 l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 534 LVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp ESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred EEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 3211 12334568899876655544 45678999998753
No 306
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.20 E-value=0.00012 Score=60.42 Aligned_cols=189 Identities=10% Similarity=0.036 Sum_probs=101.6
Q ss_pred eEEEEcCCCcEEEEee------------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee----eceeEEEEEEec
Q psy2305 5 EDVDEAPDGTCLLTNS------------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK----EGGIIYDYVWYP 68 (334)
Q Consensus 5 ~~~~~sp~~~~l~~~~------------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~ 68 (334)
..+...|+|..+++++ .+|.|.++|..+..... ..-.+.+. ..-....+...+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-----------~~l~~~g~~~~~~~f~PhGi~~~~ 121 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-----------SELEIIGNTLDISSFNPHGISTFI 121 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-----------EECEEECSSCCGGGCCEEEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-----------EEEEccCCCCCcCceeeeeeEEEE
Confidence 4677888886554441 68999999987432110 00011110 011223333321
Q ss_pred ccceecCCCc-EEEEe-eC--CCcEEEEeCCCC-ee---eEEEcCccccccccceeEEEEcCCCCEEEEee----C----
Q psy2305 69 KTSSIDGFTS-YFLCS-SM--YAPIHLWDSVGG-EI---KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----L---- 132 (334)
Q Consensus 69 ~~~~~s~~~~-~l~~~-~~--d~~i~iwd~~~~-~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d---- 132 (334)
..++. +|+++ .. +.+|.+|++..+ .. +..+... .....+.+++.++|.+.++.. |
T Consensus 122 -----d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~----~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 122 -----DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK----LLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp -----CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT----TCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred -----CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccC----CCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 12343 34443 22 457778766542 22 2333321 122678999999998777642 1
Q ss_pred --------CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCc--eEeeccCC
Q psy2305 133 --------SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRP--LFFLKGHN 201 (334)
Q Consensus 133 --------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~ 201 (334)
..=.+|-+.. + .+. .....-...+.++|+||++.++++-+..+.|..|++.. ++. ...+ ...
T Consensus 193 ~~e~~~~~~~g~vyr~d~-~-~~~----~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~ 265 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP-N-DVR----VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFD 265 (355)
T ss_dssp HHHHHTTCCCEEEEEECT-T-CCE----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECS
T ss_pred cchhhccCCccEEEEEEC-C-eEE----EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCC
Confidence 1223444432 2 122 12223345789999999983444455678999999863 322 2233 234
Q ss_pred CCeEEEEEcc-CCcEEEeee
Q psy2305 202 GGITHLEFSS-NGILLFSGA 220 (334)
Q Consensus 202 ~~i~~~~~~~-~~~~l~~~~ 220 (334)
+....++..+ +|++.+++.
T Consensus 266 g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 266 TLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SEEEEEEECTTTCCEEEEEE
T ss_pred CCCceEEEeCCCCcEEEEec
Confidence 5677899998 598777554
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.17 E-value=0.0012 Score=54.91 Aligned_cols=244 Identities=7% Similarity=-0.041 Sum_probs=119.6
Q ss_pred cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCcc--ccccccceeEEEEcCC---CCEEEEee-C--------C
Q psy2305 68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYN--QVDEVTHAYSLAFSLD---GNKIYAGF-L--------S 133 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~~~~-d--------~ 133 (334)
|..++|.|+|+.|+++...|.|++++. .+.....+.... ..........++++|+ +..|+... . .
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 455667899983444556799999985 343321111110 0001125689999996 55555432 1 2
Q ss_pred cEEEEEcCCCCCeeeeecc---ccc---ccccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCCC--
Q psy2305 134 EVKIFSTDRPGRECVSRNL---KPW---FRKNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDGR-- 192 (334)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~---~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~-- 192 (334)
.|..|++......+..... .+. ........++|.|+|. ++++.+. .|.|.-++....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 4666666532111111000 111 1112245799999997 5554332 2567777764320
Q ss_pred ----------ceEee-ccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCc------------------------
Q psy2305 193 ----------PLFFL-KGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGC------------------------ 236 (334)
Q Consensus 193 ----------~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~------------------------ 236 (334)
....+ .++ .....++|+| +|+++++-...++.=.|.-+...+.
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 11112 233 2367899999 5654444321121112222221000
Q ss_pred ------cceeecccccCCceEEEEecC-------CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc
Q psy2305 237 ------ILHTFPRQVSTNQRVYFDLTS-------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC 303 (334)
Q Consensus 237 ------~~~~~~~~~~~~~~~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (334)
+...+. .......+.|.. +|.++++.-..+.|...++..++.. .....+......
T Consensus 257 ~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~r 324 (353)
T 2g8s_A 257 VAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT---------EDGRILTDRGQR 324 (353)
T ss_dssp CTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE---------EEEEESGGGCCC
T ss_pred CCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe---------eeEEcccCCCCc
Confidence 000011 012344555643 4667766666777777777653110 011111222346
Q ss_pred cceeeeccCCCcccceeeEEe-eecceeee
Q psy2305 304 TNGVRWKHHKFERDLLVADAT-CSGQITNV 332 (334)
Q Consensus 304 i~~~~~~~s~~~~~~~~~l~t-~~~d~~i~ 332 (334)
+.++++ .||| .++++ -..+|.|+
T Consensus 325 p~~v~~--~pdG----~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 325 IRDVRT--GPDG----YLYVLTDESSGELL 348 (353)
T ss_dssp EEEEEE--CTTS----CEEEEECSTTEEEE
T ss_pred eeEEEE--CCCC----cEEEEEeCCCCEEE
Confidence 889999 9999 76664 33567664
No 308
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.12 E-value=0.0024 Score=52.40 Aligned_cols=151 Identities=9% Similarity=-0.030 Sum_probs=87.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCcEEEE-EcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC
Q psy2305 114 HAYSLAFSLDGNKIYAGFLSEVKIF-STDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR 192 (334)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 192 (334)
.+..+++.+++.+++++.++.+..- |-. +..... ........+..+.+.+++. +++ ++.+|.+++.+...++
T Consensus 164 ~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~---~~~~~~~~~~~~~~~~~g~-~~~-~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 164 VMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEP---HNRTTSRRLHNMGFTPDGR-LWM-IVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEE---EECCSSSCEEEEEECTTSC-EEE-EETTTEEEEEETTEEE
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeE---CCCCCCCccceeEECCCCC-EEE-EeCCceEEEecCCCCC
Confidence 6789999999988888776655443 321 222221 1123456788999999987 554 5567888777422232
Q ss_pred ceEeec----cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccc-ccCCceEEEEecCCCceEEeeec
Q psy2305 193 PLFFLK----GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNT 267 (334)
Q Consensus 193 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~ 267 (334)
.-..+. .....+..+.+.+++..++++. ++.+ ++..+. ++.-..+... .....+.++.|.+++. +++++.
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~--~g~i-~~S~Dg-G~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~ 311 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG--AGAL-LCSQDG-GQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ 311 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES--TTCE-EEESST-TSSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC--CCeE-EEeCCC-CcccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence 222221 1223588999998887766654 6766 333332 4433333321 1123455677765555 445557
Q ss_pred CCcEEEEeC
Q psy2305 268 NGDLSIWNV 276 (334)
Q Consensus 268 dg~i~iwd~ 276 (334)
+|.|.-++-
T Consensus 312 ~G~i~~~~~ 320 (327)
T 2xbg_A 312 KGILLRYVT 320 (327)
T ss_dssp TTEEEEECC
T ss_pred CceEEEEcC
Confidence 888776654
No 309
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.11 E-value=0.0025 Score=52.09 Aligned_cols=206 Identities=12% Similarity=0.132 Sum_probs=117.1
Q ss_pred CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE--E-EEee-C--C
Q psy2305 13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY--F-LCSS-M--Y 86 (334)
Q Consensus 13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~--l-~~~~-~--d 86 (334)
..+++.....+-+.+||+ .++..+ .+. .+.++.+...|. |.-.|+. + ++.. . +
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~--------------~~~---~g~~nnVD~r~~---~~l~g~~~dla~as~R~~~~ 98 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLH--------------SYN---TGKLNNVDIRYD---FPLNGKKVDIAAASNRSEGK 98 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEE--------------EEC---CSCEEEEEEEEE---EEETTEEEEEEEEEECSTTC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEE--------------Ecc---CCCcccEEEecc---cccCCceEeEEEEeCCCCCC
Confidence 345555567788999999 555442 222 234555554431 1113332 2 3333 3 5
Q ss_pred CcEEEEeC--CCCeeeEEEcCc--cccccccceeEEEE--cCC-CC-EEEEee-CCcEEEEEcCCCCC-eeeeecccccc
Q psy2305 87 APIHLWDS--VGGEIKATYRPY--NQVDEVTHAYSLAF--SLD-GN-KIYAGF-LSEVKIFSTDRPGR-ECVSRNLKPWF 156 (334)
Q Consensus 87 ~~i~iwd~--~~~~~~~~~~~~--~~~~~~~~v~~~~~--~~~-~~-~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~ 156 (334)
++|.+|++ .++. +..+... .-......+..+++ +|. ++ ++++.. +|.+..|++...+. ......+....
T Consensus 99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 78999966 3443 4444221 00000025677888 774 44 455555 89999999843111 01110001122
Q ss_pred cccceEEEEEcCCCCcEEEEeecCCeEEEEECC-----CCCceEeec-cC-CCCeEEEEE--ccCCc-EEEeeecCCCeE
Q psy2305 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-----DGRPLFFLK-GH-NGGITHLEF--SSNGI-LLFSGARKDCEI 226 (334)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~-~~-~~~i~~~~~--~~~~~-~l~~~~~~d~~i 226 (334)
....+..+...+... .|+.+-++..|..|+.+ +++.+..+. ++ ...+..|++ .++++ +|++++..+.++
T Consensus 178 lgsq~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 178 MNSQTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp CSSCEEEEEEETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred CCCCcceEEEcCCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 245678888988877 88889998878788854 233444442 22 246888888 45566 677777568899
Q ss_pred EEEEccCCCccceee
Q psy2305 227 ICWDLRNPGCILHTF 241 (334)
Q Consensus 227 ~iwd~~~~~~~~~~~ 241 (334)
.+||.....+.+..+
T Consensus 257 ~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 257 AIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEESSTTCCEEEEE
T ss_pred EEEECCCCCcEEEEE
Confidence 999997434545555
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.99 E-value=0.0016 Score=54.41 Aligned_cols=149 Identities=13% Similarity=0.053 Sum_probs=96.5
Q ss_pred EEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccc--cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC----
Q psy2305 119 AFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWF--RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---- 192 (334)
Q Consensus 119 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---- 192 (334)
....+|..++.+.++.||.-++.. +...+.. .... .-..+..+..+|+|. +||..+ +..|.|..+..+.
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~-~~~Yk~L--~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLT-DSLYHSL--NFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTT-CSSCEEE--ECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCC
T ss_pred EEEcCCCEEEEEECCEEEEEECCC-CCcceEE--ecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCc
Confidence 345567778877788888888774 2222211 1221 122577899999999 888765 5689999886331
Q ss_pred --------ceEeecc------CCCCeEEEEEccC---CcEEEeeecCCCeEEEEEccCCC-ccceeecc-------cccC
Q psy2305 193 --------PLFFLKG------HNGGITHLEFSSN---GILLFSGARKDCEIICWDLRNPG-CILHTFPR-------QVST 247 (334)
Q Consensus 193 --------~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~-------~~~~ 247 (334)
..+.+.- ...+|..+.|+|- +..|++-. .|+.|++||+.... .+. .+.. ....
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~ 179 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV 179 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCc-chhccccccCCCccc
Confidence 0112221 2567999999995 45788888 89999999998522 222 2221 1112
Q ss_pred CceEEEEecCCCceEEeee--cCCcEEEE
Q psy2305 248 NQRVYFDLTSCSNYLLSGN--TNGDLSIW 274 (334)
Q Consensus 248 ~~~~~~~~s~~~~~l~~~~--~dg~i~iw 274 (334)
..+.+++|.+++-.|...+ ..|.|+-.
T Consensus 180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 5677899999887776644 77877644
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.95 E-value=0.0037 Score=50.52 Aligned_cols=186 Identities=8% Similarity=0.016 Sum_probs=93.5
Q ss_pred CCcEEEEeeCC-----CcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcC
Q psy2305 76 FTSYFLCSSMY-----APIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTD 141 (334)
Q Consensus 76 ~~~~l~~~~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~ 141 (334)
++++++.|+.+ ..+.+||+.+++ ....-...... .-.+++.. +++.++.|+ + ..+.+||+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r----~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR----GLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC----BSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc----cceeEEEE-CCEEEEEcccCCCcccceEEEEcCC
Confidence 67777887754 468899988766 33322111110 11222222 566666654 2 368888987
Q ss_pred CCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-----CeEEEEECCCCCceE--eeccCCCCeEEEEEccCCc
Q psy2305 142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGI 214 (334)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 214 (334)
+. .....+ ...........+.+ ++. +++.|+.+ ..+.+||+.+.+-.. .+.........+. -+++
T Consensus 137 ~~--~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~ 208 (301)
T 2vpj_A 137 ID--QWSMLG-DMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDH 208 (301)
T ss_dssp TT--EEEEEE-ECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE
T ss_pred CC--eEEECC-CCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCE
Confidence 52 222111 11111112222222 555 77777755 458899987653222 1211111112222 2567
Q ss_pred EEEeeecCC-----CeEEEEEccCCCccceeecccccC-CceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305 215 LLFSGARKD-----CEIICWDLRNPGCILHTFPRQVST-NQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS 279 (334)
Q Consensus 215 ~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 279 (334)
.++.|+ .+ ..+.+||+.+ .. -..+...... .....+. -++++++.|+.+ ..+.+||+++.
T Consensus 209 i~v~GG-~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 209 IYVVGG-FDGTAHLSSVEAYNIRT-DS-WTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEECC-BCSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEEEeC-CCCCcccceEEEEeCCC-Cc-EEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 777776 43 4688999875 32 1222211111 1111222 267777877765 35788888875
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.95 E-value=0.0058 Score=50.76 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=40.7
Q ss_pred CCeEEEEEcc-------CCcEEEeeecCCCeEEEEEccCCCcccee--ecccccCCceEEEEecCCCceEEeee-cCCcE
Q psy2305 202 GGITHLEFSS-------NGILLFSGARKDCEIICWDLRNPGCILHT--FPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDL 271 (334)
Q Consensus 202 ~~i~~~~~~~-------~~~~l~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i 271 (334)
.....+.|.+ +|+++++.- ..+.|...++.. +..... +.. .....+..+++.|||.++++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~-~~~~v~~~~~~~-~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGAL-KDKDVIVMSVNG-DKVTEDGRILT-DRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEET-TTTEEEEEEEET-TEEEEEEEESG-GGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEc-cCCEEEEEEeCC-CeEeeeEEccc-CCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 3567788863 466666665 678888888874 332221 111 1134677899999998766533 34543
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.94 E-value=0.017 Score=55.72 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=108.7
Q ss_pred cEEEEeCCCCeeeEEEcCccccccccceeEEE---EcCC-CCEEEEee-----------CCcEEEEEcCCCCCeeeeecc
Q psy2305 88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLA---FSLD-GNKIYAGF-----------LSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~-~~~l~~~~-----------d~~i~i~d~~~~~~~~~~~~~ 152 (334)
.|++.|..+.+.+..++.... . .+.+++ |..+ ..++++|. .|.|.+|++.. ..+...
T Consensus 808 ~i~lidp~t~~~i~~~~l~~n-E---~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv-- 879 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQN-E---YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTV-- 879 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTT-E---EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEE--
T ss_pred EEEEEeCCCCeEEEEEeCCCC-c---ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEE--
Confidence 577888877777666554322 1 344444 4433 36777542 26799999973 333321
Q ss_pred cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305 153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR 232 (334)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~ 232 (334)
.....++++++++-- +| +|++| ...+|++|++...+.+..-..+-..|..+.....+.++++|. .-..+.++..+
T Consensus 880 ~~~~v~g~v~al~~~-~g--~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD-~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 880 AEKEVKGAVYSMVEF-NG--KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGD-LMRSVLLLAYK 954 (1158)
T ss_dssp EEEEESSCEEEEEEE-TT--EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEE-SSBCEEEEEEE
T ss_pred EEEEcCCcCEEEeee-CC--EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEE-hhheEEEEEEE
Confidence 234457788888754 34 44433 468999999976654441111111233333333577888888 77788887766
Q ss_pred CCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 233 NPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
.....+..+..+....+++++.+-.+ ..++.+..+|.+.+.....
T Consensus 955 ~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 955 PMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred cCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 54455666666666777888777544 4667788899999998765
No 314
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.91 E-value=0.0039 Score=50.46 Aligned_cols=175 Identities=9% Similarity=0.034 Sum_probs=97.2
Q ss_pred cCCCcEEEEeeCC--------------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcEE
Q psy2305 74 DGFTSYFLCSSMY--------------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVK 136 (334)
Q Consensus 74 s~~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~ 136 (334)
++++++|..+... ..|+..++..++... +.. . ....|+++++.|+-.. ++.-.
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~-------~~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--D-------PCIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--S-------CEEEEEEETTEEEEEEESSSSCEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--C-------CccEEEEeCCEEEEEeecCCCCce
Confidence 5688888776542 357777776554333 321 1 2346788898888443 44444
Q ss_pred EEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcE
Q psy2305 137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215 (334)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 215 (334)
||-+...+..... +..+.. .+++|+++ .|+-.+ ....|...++..+.....+. +... ..+.|++.+
T Consensus 131 Iy~~~~dGs~~~~----lt~~~~----~~~~~~g~-~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~ 197 (302)
T 3s25_A 131 LYRIRIDGEEKKK----IKNHYL----FTCNTSDR-YFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTN 197 (302)
T ss_dssp EEEEETTSCCCEE----EESSCC----CCSEEETT-EEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTE
T ss_pred EEEEECCCCCeEE----EeCCCc----eEeeEECC-EEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCE
Confidence 4444433443332 222222 35678888 555444 36788888886554433333 2222 346699998
Q ss_pred EEeeecCC-CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee--cCCcEEEEeCCCC
Q psy2305 216 LFSGARKD-CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN--TNGDLSIWNVNTS 279 (334)
Q Consensus 216 l~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~ 279 (334)
|+.....+ ..|..-++. +.....+... .+. .|+|++++|+.+. ..+.|..-++...
T Consensus 198 iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~----~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNIN--NPNPVVLTEA----NIE--HYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEEGGGTTEEEEECSS--SCCCEECSCS----CEE--EEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEEcCCCcEEEEEECC--CCCeEEEeCC----Ccc--eEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 88776222 245454554 4444555422 222 3678888887653 2456777777664
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.90 E-value=0.0024 Score=53.48 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCee-------
Q psy2305 75 GFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGREC------- 147 (334)
Q Consensus 75 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~------- 147 (334)
.+|..++.+- ++.||.-++..+...+.+....+.. ...+..+..+|+|++|+..++..|.|..+..+....
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~-f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLV-LDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCC-CCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccc-cCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 3555555553 4677777776444444554432011 115778999999999999888899999988422111
Q ss_pred --eeecccccc----cccceEEEEEcCCCCc--EEEEeecCCeEEEEECCCC--CceEeec---------cCCCCeEEEE
Q psy2305 148 --VSRNLKPWF----RKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDG--RPLFFLK---------GHNGGITHLE 208 (334)
Q Consensus 148 --~~~~~~~~~----~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~i~~~~ 208 (334)
..+...+.. ...+|..+.|+|-+.+ .|++-..|+.|++||+... ++. .+. .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 100001111 2567999999997542 7888899999999999752 222 232 2236788999
Q ss_pred EccCCcEEEe--eecCCCeEEEE
Q psy2305 209 FSSNGILLFS--GARKDCEIICW 229 (334)
Q Consensus 209 ~~~~~~~l~~--~~~~d~~i~iw 229 (334)
|.+++-.|+. .+ ..|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t-~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTT-EGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECT-TSCEEEEE
T ss_pred EcCCCcEEEEEecC-CCCCEEEE
Confidence 9998876666 44 46777644
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.77 E-value=0.01 Score=48.00 Aligned_cols=187 Identities=13% Similarity=0.119 Sum_probs=93.3
Q ss_pred CCcEEEEeeCC-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCCC
Q psy2305 76 FTSYFLCSSMY-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRPG 144 (334)
Q Consensus 76 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~ 144 (334)
++.+++.|+.+ ..+.+||..+.+....-...... .-.+++.. +++.++.|+ + ..+.+||+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~-- 133 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR----STLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKS-- 133 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTT--
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc----cceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCC--
Confidence 67778887754 35889999887654432211110 11222222 556666654 3 3577888875
Q ss_pred CeeeeecccccccccceEEEEEcCCCCcEEEEeecC-------CeEEEEECCCCCce--EeeccCCCCeEEEEEccCCcE
Q psy2305 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-------KIIGLFSDSDGRPL--FFLKGHNGGITHLEFSSNGIL 215 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~ 215 (334)
......+ ...........+.+ ++. +++.|+.+ ..+.+||+.+.+-. ..+.........+. -+++.
T Consensus 134 ~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 207 (302)
T 2xn4_A 134 NEWFHVA-PMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLL 207 (302)
T ss_dssp TEEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEE
T ss_pred CeEeecC-CCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEE
Confidence 2222111 11111112222222 455 77777653 35889998765322 12221111112222 25677
Q ss_pred EEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC-----cEEEEeCCCC
Q psy2305 216 LFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-----DLSIWNVNTS 279 (334)
Q Consensus 216 l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 279 (334)
++.|+ .+ ..+.+||+.+ .. -..+........-..+. ..++++++.|+.++ .+.+||+.+.
T Consensus 208 yv~GG-~~~~~~~~~~~~yd~~~-~~-W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 208 YAVGG-HDGPLVRKSVEVYDPTT-NA-WRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEECC-BSSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEECC-CCCCcccceEEEEeCCC-CC-EeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 77776 43 3688899875 22 12222111111111121 23677888887653 5889998875
No 317
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.75 E-value=0.0052 Score=59.23 Aligned_cols=195 Identities=9% Similarity=0.072 Sum_probs=122.6
Q ss_pred ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305 73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~ 152 (334)
.+|..+.+|.-. ..++.|+|+++.+.++.+.... +|.-=.|-.+ +.|+...+..|.-|++.....+.+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------~VvfWkWis~-~~l~lVT~~aVyHW~~~~~s~P~k---- 140 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVK---- 140 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC------CceEEEecCC-CeeEEEcCCeEEEeccCCCCccHH----
Confidence 477877777654 6789999999888777766533 4555566544 356656678899999974222222
Q ss_pred ccccc----ccceEEEEEcCCCCcEEEEee-------cCCeEEEEECCCCCceEeeccCCCCeEEEEEc--cC-CcEEEe
Q psy2305 153 KPWFR----KNIVSAIAINPVHPDICALGT-------YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFS--SN-GILLFS 218 (334)
Q Consensus 153 ~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~ 218 (334)
.+..| ...|..-..+++.+ +++..+ -.|.+.+|..+. +..+.+.||.+.-..+... +. ...++.
T Consensus 141 ~fdR~~~L~~~QIinY~~d~~~k-W~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 141 MFDRHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred HHhcchhcccCeeEEeeeCCCCC-eEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEE
Confidence 22223 45677788899998 665432 347899999754 3455667776655444442 11 223443
Q ss_pred eec--CCCeEEEEEccCC--Cccce-------eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305 219 GAR--KDCEIICWDLRNP--GCILH-------TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL 281 (334)
Q Consensus 219 ~~~--~d~~i~iwd~~~~--~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 281 (334)
+.+ ..+.+.|.++..+ +.+.. .+..........++..++.-..+...+.-|.++++|+.++..
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 331 1368899888642 11111 111111234456677888888888888999999999999843
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.74 E-value=0.011 Score=47.62 Aligned_cols=189 Identities=11% Similarity=0.072 Sum_probs=93.2
Q ss_pred CCcEEEEee-CC-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCC
Q psy2305 76 FTSYFLCSS-MY-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRP 143 (334)
Q Consensus 76 ~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~ 143 (334)
++.+++.|+ .+ ..+.+||+.+++....-...... .-.+++. .++..++.|+ + ..+.+||+.+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR----RYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC----BSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh----ccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 556677776 33 36889998877644321111110 1122222 3456666654 3 46889998863
Q ss_pred CCe-eeeecccccccccceEEEEEcCCCCcEEEEeecC-----CeEEEEECCCCCc--eEeeccCCCCeEEEEEccCCcE
Q psy2305 144 GRE-CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGIL 215 (334)
Q Consensus 144 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~ 215 (334)
... ....+ .+.........+.+ ++. +++.|+.+ ..+.+||..+.+- +..+......-..+. -+++.
T Consensus 89 ~~~~W~~~~-~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVA-PMNVRRGLAGATTL--GDM-IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEEC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECC-CCCCCccceeEEEE--CCE-EEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 300 11111 11111122222222 555 77777654 3688999876542 222221111112222 26777
Q ss_pred EEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305 216 LFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS 279 (334)
Q Consensus 216 l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 279 (334)
++.|+ .+ ..+.+||+.+ .. -..+..........++. .-++++++.|+.+ ..+.+||+.+.
T Consensus 163 yv~GG-~~~~~~~~~~~~~d~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 163 YCLGG-YDGLNILNSVEKYDPHT-GH-WTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEECC-BCSSCBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEECC-CCCCcccceEEEEeCCC-Cc-EEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 77776 44 4588888875 22 12221111111111121 1257777777764 46889999875
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.70 E-value=0.013 Score=47.32 Aligned_cols=186 Identities=8% Similarity=0.029 Sum_probs=93.7
Q ss_pred CCcEEEEeeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C------CcEEEEEcCCCC
Q psy2305 76 FTSYFLCSSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L------SEVKIFSTDRPG 144 (334)
Q Consensus 76 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d------~~i~i~d~~~~~ 144 (334)
++.+++.|+.+ ..+.+||+.+++....-...... .-.+++. -++++++.|+ + ..+.+||+.+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~- 128 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR----DSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTE- 128 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC----BSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTT-
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc----cceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCC-
Confidence 67777887754 56888999887654432221111 1112222 2566666654 3 46888998852
Q ss_pred CeeeeecccccccccceEEEEEcCCCCcEEEEeec---------CCeEEEEECCCCCce--EeeccCCCCeEEEEEccCC
Q psy2305 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY---------SKIIGLFSDSDGRPL--FFLKGHNGGITHLEFSSNG 213 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~ 213 (334)
.....+ ...........+.+ ++. +++.|+. -..+.+||+.+.+-. ..+......- ++... ++
T Consensus 129 -~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~ 201 (306)
T 3ii7_A 129 -SWHTKP-SMLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNH-GLVFV-KD 201 (306)
T ss_dssp -EEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TT
T ss_pred -ceEeCC-CCcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcc-eEEEE-CC
Confidence 222111 11111111222222 555 7777764 345889998776322 1121111111 22222 56
Q ss_pred cEEEeeecCC-----CeEEEEEccCCCccceeeccccc-CCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305 214 ILLFSGARKD-----CEIICWDLRNPGCILHTFPRQVS-TNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS 279 (334)
Q Consensus 214 ~~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 279 (334)
+.++.|+ .+ ..+.+||+.+ .. -..+..... ......+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 202 ~i~v~GG-~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 202 KIFAVGG-QNGLGGLDNVEYYDIKL-NE-WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEECC-EETTEEBCCEEEEETTT-TE-EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEEEeC-CCCCCCCceEEEeeCCC-Cc-EEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 6777766 33 4578888875 22 111211101 111122222 67788888754 46888998885
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.68 E-value=0.015 Score=47.22 Aligned_cols=188 Identities=10% Similarity=0.042 Sum_probs=92.7
Q ss_pred CCCcEEEEeeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeC----------CcEEEEEc
Q psy2305 75 GFTSYFLCSSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL----------SEVKIFST 140 (334)
Q Consensus 75 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d----------~~i~i~d~ 140 (334)
-++.+++.|+.+ ..+.+||..+++....-...... .-.+++.. ++.+++.|+. +.+.+||+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR----SGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc----ccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECC
Confidence 366777777742 36889999887654321111110 11222222 5555555431 46888888
Q ss_pred CCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-----CeEEEEECCCCCceE--eeccCCCCeEEEEEccCC
Q psy2305 141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNG 213 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~ 213 (334)
.+ ......+ .+.........+.+ ++. +++.|+.+ ..+.+||..+.+-.. .+......-..+.+ ++
T Consensus 98 ~~--~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 169 (308)
T 1zgk_A 98 MT--NQWSPCA-PMSVPRNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR 169 (308)
T ss_dssp TT--TEEEECC-CCSSCCBTCEEEEE--TTE-EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred CC--CeEeECC-CCCcCccccEEEEE--CCE-EEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC
Confidence 75 2222211 11111122222333 555 77777654 358899987653221 12211111122222 56
Q ss_pred cEEEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305 214 ILLFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS 279 (334)
Q Consensus 214 ~~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 279 (334)
+.++.|+ .+ ..+.+||+.+ .. -..+..........++.. -++++++.|+.+ ..+.+||+.+.
T Consensus 170 ~iyv~GG-~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 170 LLYAVGG-FDGTNRLNSAECYYPER-NE-WRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEEEECC-BCSSCBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEEeC-CCCCCcCceEEEEeCCC-Ce-EeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 6777766 43 4588888875 22 111111101111111212 267777877764 46899998875
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.64 E-value=0.016 Score=46.83 Aligned_cols=187 Identities=9% Similarity=0.071 Sum_probs=91.3
Q ss_pred CcEEEEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcCCCCCeeee
Q psy2305 77 TSYFLCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTDRPGRECVS 149 (334)
Q Consensus 77 ~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~ 149 (334)
+.+++.|+. ...+.+||..+++....-...... .-.+++. -++..++.|+ + ..+.+||+.+. ....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKR----RDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKD--SWYS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCC----BSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTT--EEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCccc----ceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCC--eEEE
Confidence 445666654 357899999887654321111110 1122222 2555666654 3 67888998852 2221
Q ss_pred ecccccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeec
Q psy2305 150 RNLKPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGAR 221 (334)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~ 221 (334)
.+ .+.........+.+ ++. +++.|+.+ ..+.+||..+.+-.. .+......-..+. -+++.++.|+.
T Consensus 85 ~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 158 (306)
T 3ii7_A 85 KL-GPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGS 158 (306)
T ss_dssp EE-CCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred CC-CCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCC
Confidence 11 11111112222222 555 77778765 458899987764221 1211111111222 25666666651
Q ss_pred C--------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305 222 K--------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS 279 (334)
Q Consensus 222 ~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 279 (334)
. -..+.+||+.+ .. -..+..........++.. -++++++.|+.+ ..+.+||+.+.
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPAT-ET-WTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp ESCTTTCEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCCcccccceEEEeCCCC-Ce-EEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 1 34578888875 22 222221111111111222 266777777654 46889998875
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.63 E-value=0.019 Score=47.24 Aligned_cols=237 Identities=12% Similarity=-0.044 Sum_probs=118.0
Q ss_pred cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeE--EEcCccccccccceeEEEEcCC---CCEEEEe----eCCcEEEE
Q psy2305 68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKA--TYRPYNQVDEVTHAYSLAFSLD---GNKIYAG----FLSEVKIF 138 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~----~d~~i~i~ 138 (334)
|..++|.|+|+++++-...|.|++++..+++... .+..... ........|+++|+ +..|+.. .++.|.-|
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~-~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSP-SGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC-BTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceee-cCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 3456668899977766558999999866555422 1211101 11126789999996 3445432 24566666
Q ss_pred EcCCCC---Ce---eeeeccccc-ccccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCC----C--
Q psy2305 139 STDRPG---RE---CVSRNLKPW-FRKNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDG----R-- 192 (334)
Q Consensus 139 d~~~~~---~~---~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~----~-- 192 (334)
.+.... .. ...+...+. .....-..|.|.|+|. +.++.+. .|.|.-++.... .
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 655310 01 110000111 1122345799999998 6665432 355555564321 0
Q ss_pred -ceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc------------------ceeecccccCCceEE
Q psy2305 193 -PLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI------------------LHTFPRQVSTNQRVY 252 (334)
Q Consensus 193 -~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~------------------~~~~~~~~~~~~~~~ 252 (334)
....+ .+|.. ...++|+|+|.+.++-...++.=.|--+.. +.. +..+..+ ......
T Consensus 192 ~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~-G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~~ap~G 267 (347)
T 3das_A 192 PGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKP-GDNYGWPEAEGKGGGSGFHDPVAQWSTD--EASPSG 267 (347)
T ss_dssp TTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECT-TCBCCTTTCCSSCCCTTCCCCSEEECTT--TCCEEE
T ss_pred CCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcC-CCEecCCcccCCCCCccccCCcEecCCC--CCCCcc
Confidence 01111 24443 458999998876554321233223333332 111 1111100 113344
Q ss_pred EEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305 253 FDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC 325 (334)
Q Consensus 253 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~ 325 (334)
++|. +|..++..-..+.|....+...... .+....+.+..+.+.+++. .||| .++++.
T Consensus 268 ~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~--------~~~e~~l~~~~gR~~dv~~--~pDG----~lyv~t 325 (347)
T 3das_A 268 IAYA-EGSVWMAGLRGERLWRIPLKGTAAA--------ADPQAFLEGEYGRLRTVAP--AGGD----KLWLVT 325 (347)
T ss_dssp EEEE-TTEEEEEESTTCSEEEEEEETTEES--------SCCEEESTTTSSCEEEEEE--EETT----EEEEEE
T ss_pred eEEE-cCceeeccccCCEEEEEEecCCcee--------cceEEeecCCCCCccEEEE--CCCC----cEEEEE
Confidence 5554 3555555444556666666543110 0111223333457899999 9999 765554
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.58 E-value=0.062 Score=51.87 Aligned_cols=205 Identities=12% Similarity=0.127 Sum_probs=111.6
Q ss_pred eeeeeceeEEEEEEecccceecC-CCcEEEEee----------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc
Q psy2305 53 LKIKEGGIIYDYVWYPKTSSIDG-FTSYFLCSS----------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS 121 (334)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 121 (334)
+.....+.+.+++- +.|.. ...+|++|. ..|.|.++++..++.. .+..... .++|++++--
T Consensus 823 ~~l~~nE~~~sv~~----v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~-lv~~~~v---~g~v~al~~~ 894 (1158)
T 3ei3_A 823 HQFLQNEYALSLVS----CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-TVAEKEV---KGAVYSMVEF 894 (1158)
T ss_dssp EECCTTEEEEEEEE----ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE-EEEEEEE---SSCEEEEEEE
T ss_pred EeCCCCcceEEEEE----EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE-EEEEEEc---CCcCEEEeee
Confidence 33334455555554 23333 246788775 3478999998754432 2221111 1267777644
Q ss_pred CCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceEee--c
Q psy2305 122 LDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLFFL--K 198 (334)
Q Consensus 122 ~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~--~ 198 (334)
+| +|++|-...+++|++.. .+.+.. ....+. .+..+.....++ +++.|..-..|.++..+. ...+..+ .
T Consensus 895 -~g-~Lla~ig~~l~vy~l~~-~~~L~~---~~~~~~-~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D 966 (1158)
T 3ei3_A 895 -NG-KLLASINSTVRLYEWTT-EKELRT---ECNHYN-NIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARD 966 (1158)
T ss_dssp -TT-EEEEEETTEEEEEEECT-TSCEEE---EEEECC-CSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEEEC
T ss_pred -CC-EEEEEcCCEEEEEECCC-CceEEE---Eeeccc-cEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEee
Confidence 34 67777788999999985 333321 111111 133323333455 888888777777655432 2222222 2
Q ss_pred cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC------ccceeecccccCCceEEEE---ecCC---------Cc
Q psy2305 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG------CILHTFPRQVSTNQRVYFD---LTSC---------SN 260 (334)
Q Consensus 199 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~---~s~~---------~~ 260 (334)
.....++++.+-.++ .++.+. .+|.+.+....... +.+........+..+.++. +.+. ..
T Consensus 967 ~~~~~vta~~~ld~~-t~l~aD-~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~ 1044 (1158)
T 3ei3_A 967 FNPNWMSAVEILDDD-NFLGAE-NAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQG 1044 (1158)
T ss_dssp CSCBCEEEEEEEETT-EEEEEE-TTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEE
T ss_pred cccccEEEEEEEccC-cEEEEc-CCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccc
Confidence 245678888887655 566677 79999998776411 1111111111234455553 2332 23
Q ss_pred eEEeeecCCcEEEEe
Q psy2305 261 YLLSGNTNGDLSIWN 275 (334)
Q Consensus 261 ~l~~~~~dg~i~iwd 275 (334)
.++.++.+|.|-+.-
T Consensus 1045 ~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1045 SVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred eEEEEecCCEEEEEE
Confidence 567778888887663
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.56 E-value=0.032 Score=48.00 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=56.3
Q ss_pred ccceecCCCcEEEEeeCCCcEEEEeCCCCeeeE--EEcCcc-ccccccceeEEEEcCC---CCEEEEee-C---------
Q psy2305 69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKA--TYRPYN-QVDEVTHAYSLAFSLD---GNKIYAGF-L--------- 132 (334)
Q Consensus 69 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~~-d--------- 132 (334)
..++|.|+|+++++-...+.|.+++..+++... .+.... ..........|+|+|+ +..|+... .
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~ 109 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE 109 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence 345568899877665443478888865554322 222110 0001126789999996 55555432 1
Q ss_pred ----CcEEEEEcCCCCCeeeeeccc---cc-ccccceEEEEEcCCCCcEEEEe
Q psy2305 133 ----SEVKIFSTDRPGRECVSRNLK---PW-FRKNIVSAIAINPVHPDICALG 177 (334)
Q Consensus 133 ----~~i~i~d~~~~~~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~~l~~~ 177 (334)
..|.-++.......+...... +. ........|+|.|+|. +.++.
T Consensus 110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~ 161 (454)
T 1cru_A 110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTI 161 (454)
T ss_dssp SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEE
T ss_pred cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEE
Confidence 245556654311111110000 11 1123478999999998 55543
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.38 E-value=0.038 Score=44.73 Aligned_cols=187 Identities=9% Similarity=0.076 Sum_probs=92.8
Q ss_pred CCcEEEEeeC----C-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEc
Q psy2305 76 FTSYFLCSSM----Y-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFST 140 (334)
Q Consensus 76 ~~~~l~~~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~ 140 (334)
++.+++.|+. + ..+.+||+.+.+....-...... .-.+++.. +++.++.|+ + ..+.+||+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR----NRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC----BTCEEEEE-TTEEEEECCEETTEECCCEEEEET
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCc----cccEEEEE-CCEEEEEcCCCCCcccccEEEECC
Confidence 6677777765 2 46888998877654322111110 11122222 566666654 2 46888998
Q ss_pred CCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-----CeEEEEECCCCCce--EeeccCCCCeEEEEEccCC
Q psy2305 141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGLFSDSDGRPL--FFLKGHNGGITHLEFSSNG 213 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~ 213 (334)
.+. .....+ .+.........+.+ ++. +++.|+.+ ..+.+||+.+.+-. ..+......-..+.+ ++
T Consensus 145 ~~~--~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 216 (308)
T 1zgk_A 145 ERD--EWHLVA-PMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN 216 (308)
T ss_dssp TTT--EEEECC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred CCC--eEeECC-CCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC
Confidence 752 222111 11111122222333 555 77777764 45889998765321 112111111122222 67
Q ss_pred cEEEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305 214 ILLFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS 279 (334)
Q Consensus 214 ~~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 279 (334)
+.++.|+ .+ ..+.+||+.+ .. -..+..........++.. -++++++.|+.+ ..+.+||+.+.
T Consensus 217 ~iyv~GG-~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 217 CIYAAGG-YDGQDQLNSVERYDVET-ET-WTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EEEEECC-BCSSSBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EEEEEeC-CCCCCccceEEEEeCCC-Cc-EEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 7777776 44 4688999875 22 112211111111111222 267777877754 45788888775
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.37 E-value=0.039 Score=44.45 Aligned_cols=188 Identities=8% Similarity=0.097 Sum_probs=90.8
Q ss_pred CCcEEEEeeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCCCC
Q psy2305 76 FTSYFLCSSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRPGR 145 (334)
Q Consensus 76 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~ 145 (334)
++.+++.|+.+ ..+..||+.+.+....-...... .-.+++.. ++..++.|+ + ..+.+||..+ .
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~--~ 87 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR----CRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVK--D 87 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTT--T
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc----ccceEEEE-CCEEEEEeCcCCCccccceEEECCCC--C
Confidence 44566666643 36888999887654331111110 11222222 556666654 3 4588888875 2
Q ss_pred eeeeecccccccccceEEEEEcCCCCcEEEEeecCC-----eEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEe
Q psy2305 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-----IIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFS 218 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~ 218 (334)
.....+ ...........+.+ ++. +++.|+.++ .+.+||+.+.+-.. .+....... +++. -+++.++.
T Consensus 88 ~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~ 161 (302)
T 2xn4_A 88 QWTSVA-NMRDRRSTLGAAVL--NGL-LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAV 161 (302)
T ss_dssp EEEEEC-CCSSCCBSCEEEEE--TTE-EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEE
T ss_pred ceeeCC-CCCccccceEEEEE--CCE-EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEE
Confidence 222211 11111112222222 455 777777653 58889987653221 121111111 2222 25666666
Q ss_pred eecC------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305 219 GARK------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS 279 (334)
Q Consensus 219 ~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 279 (334)
|+.. -..+.+||+.+ .. -..+..........++. .-++++++.|+.+ ..+.+||+.+.
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATT-NE-WTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp CCEETTTTEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred eCCCCCCCccccEEEEEeCCC-Cc-EEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 6511 23578888875 22 11111110111111121 1267788887764 36889998875
No 327
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.35 E-value=0.041 Score=44.44 Aligned_cols=237 Identities=9% Similarity=0.085 Sum_probs=144.3
Q ss_pred EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM 85 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~ 85 (334)
+.-.+|..+.+|.=. ..+++|+|+++.+.. +.... .+.|.-=.|- +.+.|+..+
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~kl--------------ks~~~--~e~VvfWkWi--------s~~~L~lVT- 124 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM--------------KAHTM--TDDVTFWKWI--------SLNTVALVT- 124 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEE--------------EEEEC--SSCEEEEEEC--------SSSEEEEEE-
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhh--------------cceec--CCccEEEEec--------CCCeEEEEc-
Confidence 344678888777655 578999999988765 22222 2445444552 233455544
Q ss_pred CCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEE-Ee---e----CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 86 YAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AG---F----LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 86 d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~----d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+..|+-|++.. ....+.+..+..... ..|.....+++.++++ +| . .|.+.+|..+. +..+ .+.+
T Consensus 125 ~taVyHWs~~~~s~P~kvFdR~~~L~~-~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ----~ieG 197 (365)
T 2xzh_A 125 DNAVYHWSMEGESQPVKMFDRHSSLAG-CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQ----PIEG 197 (365)
T ss_dssp SSEEEEEESSTTCCCEEEEECCGGGTT-CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEE----EECC
T ss_pred CCcEEEEcccCCCCCceeeecchhccc-ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc--cccc----eeee
Confidence 45799999864 345667766554432 3788888999999887 33 1 37888999884 3333 4677
Q ss_pred cccceEEEEEcCC--CCcEEEEeec---CCeEEEEECCCC---Cc------eEeec---cCCCCeEEEEEccCCcEEEee
Q psy2305 157 RKNIVSAIAINPV--HPDICALGTY---SKIIGLFSDSDG---RP------LFFLK---GHNGGITHLEFSSNGILLFSG 219 (334)
Q Consensus 157 ~~~~v~~~~~~~~--~~~~l~~~~~---dg~i~i~d~~~~---~~------~~~~~---~~~~~i~~~~~~~~~~~l~~~ 219 (334)
|......+....+ ...+++.+.. .+++++.++... .. +..+. ....-..++..++.-..++.-
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 7554433333211 1124444433 268999998432 11 11111 113344577888877788888
Q ss_pred ecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 220 ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 220 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
+ .-|.|++||+.+ +.++..-.-. ...+...+-+....-++.....|.|.--.++..
T Consensus 278 T-K~G~ihlyDleT-gt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 278 T-KYGYIHLYDLET-GTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp E-TTSEEEEEETTT-CCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred e-CCcEEEEEEccc-CcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 8 899999999998 7666544432 344443333344444555567888877777765
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.33 E-value=0.008 Score=45.52 Aligned_cols=150 Identities=7% Similarity=-0.136 Sum_probs=83.6
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCC--------eEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG--------ITHLEFSSNGILLFSGARKDCEIICWD 230 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~~d~~i~iwd 230 (334)
..+..++|+|+|. +.++ .+|.++-.+..+.....-+. .... -..+.|.|+|.+.++ + ||.|+-++
T Consensus 41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav-~--dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV-S--KDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE-E--TTEEEEES
T ss_pred ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe-C--CCEEEEeC
Confidence 3677999999997 6665 78888877765532211111 1112 367899999987666 6 69888776
Q ss_pred ccCCCccce----eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc--ccccc
Q psy2305 231 LRNPGCILH----TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA--HQDCT 304 (334)
Q Consensus 231 ~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i 304 (334)
..+.+..-. ...+...-..+..+.+.|+|.+.++. |+.++-........ ..+-......+ .-...
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~-------~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQ-------DNWLARATKIGQGGWDTF 184 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTT-------CCHHHHCEEEESSSGGGE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCC-------cccccccceeccCCcceE
Confidence 533222111 11111112356778899999888777 77754332222110 00000111111 12234
Q ss_pred ceeeeccCCCcccceeeEEeeecceeee
Q psy2305 305 NGVRWKHHKFERDLLVADATCSGQITNV 332 (334)
Q Consensus 305 ~~~~~~~s~~~~~~~~~l~t~~~d~~i~ 332 (334)
..+.| .|++ .+.+.. ++.++
T Consensus 185 r~l~f--~~~G----~l~~v~--~g~~Y 204 (236)
T 1tl2_A 185 KFLFF--SSVG----TLFGVQ--GGKFY 204 (236)
T ss_dssp EEEEE--CTTS----CEEEEE--TTEEE
T ss_pred EEEEE--CCCC----cEEEEe--CCeEE
Confidence 55778 9999 665555 77665
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.18 E-value=0.045 Score=41.49 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=78.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccc--------eEEEEEcCCCCcEEEEeecCCeEEE
Q psy2305 114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNI--------VSAIAINPVHPDICALGTYSKIIGL 185 (334)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i 185 (334)
.+..++|+|+|.+.++ .+|.+.-.+..+.... ...+.... ..++.|.|+|. +.++ .||.|+-
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~------~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr 111 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND------NWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYK 111 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC------CHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEE
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcc------cccccccEecccccccceEEEECCCCC-EEEe--CCCEEEE
Confidence 5779999999986667 8777655554321111 11111222 37899999997 6655 5699988
Q ss_pred EECCCCCceEee-------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc------ceeecccccCCceEE
Q psy2305 186 FSDSDGRPLFFL-------KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI------LHTFPRQVSTNQRVY 252 (334)
Q Consensus 186 ~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~ 252 (334)
++-.+...-.-+ .+.=..+..+.+.|+|.+.++. |+.++- ...+... ...............
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~lyr--~~~P~~~~~~wl~~~~~~g~~g~~~yr~ 186 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFYK--ALPPVSNQDNWLARATKIGQGGWDTFKF 186 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEEE--ECCCSSTTCCHHHHCEEEESSSGGGEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEEe--cCCCCCCCcccccccceeccCCcceEEE
Confidence 876442221111 1111467899999999755544 555433 2221111 111111111122233
Q ss_pred EEecCCCceEEeeecCCcE
Q psy2305 253 FDLTSCSNYLLSGNTNGDL 271 (334)
Q Consensus 253 ~~~s~~~~~l~~~~~dg~i 271 (334)
+.|.+++.+.++. +|.+
T Consensus 187 l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 187 LFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECTTSCEEEEE--TTEE
T ss_pred EEECCCCcEEEEe--CCeE
Confidence 5688888877766 6643
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.17 E-value=0.097 Score=45.00 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=24.0
Q ss_pred CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCc
Q psy2305 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELH 35 (334)
Q Consensus 2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~ 35 (334)
+..+.|+|.|+|+++++-...+.|++++..++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 4567999999998766654335788887655543
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.13 E-value=0.076 Score=43.06 Aligned_cols=183 Identities=9% Similarity=0.013 Sum_probs=88.2
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-----C-------CcEEEEEcCCCCCe
Q psy2305 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-----L-------SEVKIFSTDRPGRE 146 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----d-------~~i~i~d~~~~~~~ 146 (334)
+++.|+ ..+..||..+++... ........ .........++..++.|+ + ..+..||..+ ..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVP---KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD--SE 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSC---SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT--TE
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCC---ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC--Ce
Confidence 445555 468999998887543 21111101 222233344666666554 1 1267788775 22
Q ss_pred eeeecccccccccceEEEEEcCCCCcEEEEeecC--------CeEEEEECCCCCc--eEeeccCCCCeEEEEEccCCcEE
Q psy2305 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--------KIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGILL 216 (334)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l 216 (334)
....+ ...........+.+ ++. +++.|+.+ ..+.+||..+.+- +..+......- +++. -+++.+
T Consensus 79 W~~~~-~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iy 152 (315)
T 4asc_A 79 WLGMP-PLPSPRCLFGLGEA--LNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVY 152 (315)
T ss_dssp EEECC-CBSSCEESCEEEEE--TTE-EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEE
T ss_pred EEECC-CCCcchhceeEEEE--CCE-EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEE
Confidence 22111 11111111122222 455 77777743 3588999876532 11222111111 2222 456677
Q ss_pred EeeecC-C-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC-----cEEEEeCCCC
Q psy2305 217 FSGARK-D-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-----DLSIWNVNTS 279 (334)
Q Consensus 217 ~~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 279 (334)
+.|+ . + ..+.+||+.+ .. -..+..........++. .-++++++.|+.++ .+.+||+.+.
T Consensus 153 v~GG-~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 153 VIGG-KGSDRKCLNKMCVYDPKK-FE-WKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EECC-BCTTSCBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEeC-CCCCCcccceEEEEeCCC-Ce-EEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 7776 4 2 4688888875 22 11111110111111111 22677888887654 5888898875
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.07 E-value=0.11 Score=43.85 Aligned_cols=237 Identities=9% Similarity=0.088 Sum_probs=144.8
Q ss_pred EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM 85 (334)
Q Consensus 6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~ 85 (334)
+.-.+|..+.+|.=. ..+++|||+++.+.. +.... .+.|.-=.|- ++ +.|+..+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~kl--------------ks~~~--~e~VvfWkWi------s~--~~l~lVT- 123 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM--------------KAHTM--TDDVTFWKWI------SL--NTVALVT- 123 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEE--------------EEEEC--SSCCCEEEEE------ET--TEEEEEC-
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhh--------------cceec--CCCceEEEec------CC--CeEEEEc-
Confidence 344677777776654 578999999987755 22222 2334333452 22 3455544
Q ss_pred CCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEE-Ee---e----CCcEEEEEcCCCCCeeeeecccccc
Q psy2305 86 YAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AG---F----LSEVKIFSTDRPGRECVSRNLKPWF 156 (334)
Q Consensus 86 d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~----d~~i~i~d~~~~~~~~~~~~~~~~~ 156 (334)
+..|+-|++.. ....+.+..+..... ..|.....+++.++++ +| . .|.+.+|..+. +..+ .+.+
T Consensus 124 ~taVyHWsi~~~s~P~kvFdR~~~L~~-~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ----~ieG 196 (494)
T 1bpo_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAG-CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQ----PIEG 196 (494)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGGTT-CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--CCEE----EECC
T ss_pred CCeeEEecccCCCCchhheecchhccc-ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--cccc----hhee
Confidence 45799999864 345667766554432 3788889999999887 33 1 36888999884 3333 4677
Q ss_pred cccceEEEEEcCCC--CcEEEEeecC---CeEEEEECCCC---Cc-----eEee----ccCCCCeEEEEEccCCcEEEee
Q psy2305 157 RKNIVSAIAINPVH--PDICALGTYS---KIIGLFSDSDG---RP-----LFFL----KGHNGGITHLEFSSNGILLFSG 219 (334)
Q Consensus 157 ~~~~v~~~~~~~~~--~~~l~~~~~d---g~i~i~d~~~~---~~-----~~~~----~~~~~~i~~~~~~~~~~~l~~~ 219 (334)
|......+....+. ..+++.+... ++++|.++... .. ...+ .....-..++..++.-..++.-
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 76555444433221 1244444433 78999998543 11 1111 1123345578888887788888
Q ss_pred ecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 220 ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 220 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
+ .-|.|.+||+.+ +.++..-.- ....+...+-+....-++.....|.|.--.++..
T Consensus 277 T-K~G~i~lyDleT-gt~i~~nrI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 277 T-KYGYIHLYDLET-GTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp E-TTSEEEEEETTT-CCEEEEEEC--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred e-cCceEEEEeccc-ceeeeeecc--cCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 8 899999999998 666654442 2444443344444445555567888877777665
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.05 E-value=0.099 Score=43.00 Aligned_cols=240 Identities=9% Similarity=0.047 Sum_probs=117.9
Q ss_pred CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
++..+.|+|.|||+++++--..|.|++++..+++... +.. . ..+..........++++|. |..++.+.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v~~-------~-~~v~~~g~~GllGia~~Pd---f~~~g~lY 98 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-LGE-------V-PGVSPSGEGGLLGIALSPD---YASDHMVY 98 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEE-------C-TTCCCBTTBSEEEEEECTT---HHHHCEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-ecc-------c-CceeecCCCCceeeEeccc---cccCCEEE
Confidence 3456899999999877665448999999866554321 000 0 0011112344566666431 01134444
Q ss_pred EEe--eCCCcEEEEeCCCC----------eee-EEEcC-ccccccccceeEEEEcCCCCEEEEeeC--------------
Q psy2305 81 LCS--SMYAPIHLWDSVGG----------EIK-ATYRP-YNQVDEVTHAYSLAFSLDGNKIYAGFL-------------- 132 (334)
Q Consensus 81 ~~~--~~d~~i~iwd~~~~----------~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~d-------------- 132 (334)
++- ..++.|.-|.+..+ +.+ ..+.. ..| .-..|+|.|||.+.++..|
T Consensus 99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H-----~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~ 173 (347)
T 3das_A 99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH-----NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLG 173 (347)
T ss_dssp EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC-----CCCCEEECTTSCEEEECBCTTCGGGTTCTTCST
T ss_pred EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc-----cCccccCCCCCCEEEEECCCCCCccccCCCCCC
Confidence 432 23445655655431 111 12221 122 4468999999987775321
Q ss_pred CcEEEEEcCCCCCeee-----eecccccccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCC--------------
Q psy2305 133 SEVKIFSTDRPGRECV-----SRNLKPWFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGR-------------- 192 (334)
Q Consensus 133 ~~i~i~d~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~-------------- 192 (334)
|.|.-++.+ +.... ...+...+|. ....++|+|+|. +.++- +.++.=.|--+..+.
T Consensus 174 G~IlRi~~d--G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~ 249 (347)
T 3das_A 174 GKILRMTPD--GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGS 249 (347)
T ss_dssp TCEEEECTT--SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCT
T ss_pred CEEEEEeCC--CCccCCCCCCCCeEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCc
Confidence 333333433 32100 0000123443 355899999887 55443 222222222222221
Q ss_pred ----ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc---cceeecccccCCceEEEEecCCCceEEee
Q psy2305 193 ----PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC---ILHTFPRQVSTNQRVYFDLTSCSNYLLSG 265 (334)
Q Consensus 193 ----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 265 (334)
++..+..+......++|. +|..+...- ..+.|....+...+. ....+.. ....+..++..|||.++++.
T Consensus 250 ~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l-~~~~l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 250 GFHDPVAQWSTDEASPSGIAYA-EGSVWMAGL-RGERLWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp TCCCCSEEECTTTCCEEEEEEE-TTEEEEEES-TTCSEEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEE
T ss_pred cccCCcEecCCCCCCCcceEEE-cCceeeccc-cCCEEEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEE
Confidence 122233222355677776 455555555 566676666664221 1111221 23457778888888766654
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0045 Score=50.68 Aligned_cols=192 Identities=10% Similarity=0.071 Sum_probs=98.6
Q ss_pred cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE---cCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecc
Q psy2305 78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF---SLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNL 152 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~ 152 (334)
.++++++.||.|.-+|.++|+.+..++... .. ++....- ..++..++.. . ||.+..++..+ +.......+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~---p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~ 85 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQ---PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSI 85 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG-SC---CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc-cC---CcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeecc
Confidence 468888999999999999999999887641 01 1111110 0123334443 3 89999999875 432221110
Q ss_pred cccccccceEE---EEE-c----CCCCcEEEEeecCCeEEEEECCCCCceEeeccCC--CC-----eEEEEEc-----cC
Q psy2305 153 KPWFRKNIVSA---IAI-N----PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN--GG-----ITHLEFS-----SN 212 (334)
Q Consensus 153 ~~~~~~~~v~~---~~~-~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~-----i~~~~~~-----~~ 212 (334)
.-.....++.. ... . ..+. .+++|+.+|.+.-.|+++|+.+..+.... +. ..+.... ..
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp HHHHTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred ccceeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence 00011122221 001 0 0233 78899999999999999999998885321 10 0111110 12
Q ss_pred CcEEEeeecCCCeEEEEEccCCCccceeecc-----cccCCceE-EEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305 213 GILLFSGARKDCEIICWDLRNPGCILHTFPR-----QVSTNQRV-YFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280 (334)
Q Consensus 213 ~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 280 (334)
+..|+.+. .+..+.+.+ ++ +. ...+.. ......+. ....+.++.++ .++.||.|.-+|..++.
T Consensus 165 ~~~v~ig~-~~y~v~~~~-~s-G~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 165 ENMIVIGK-TIFELGIHS-YD-GA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRI 233 (339)
T ss_dssp CCEEEEEE-EEEECEECC-TT-SC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCC
T ss_pred CCeEEEec-ceEEEEEEC-CC-CC-eEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCc
Confidence 34566666 566666655 33 32 222110 00000000 00012345553 46677888888877763
No 335
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=97.02 E-value=0.14 Score=44.10 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCc-EEEEeeCCCeEEEEECC
Q psy2305 2 DIEEDVDEAPDGT-CLLTNSNDNHLRTFDLP 31 (334)
Q Consensus 2 d~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~ 31 (334)
+.-+.|+|.|||+ .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4567899999996 56666788999999754
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.82 E-value=0.13 Score=42.42 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=14.7
Q ss_pred CCcEEEEeeCC-CcEEEEeCCC
Q psy2305 76 FTSYFLCSSMY-APIHLWDSVG 96 (334)
Q Consensus 76 ~~~~l~~~~~d-~~i~iwd~~~ 96 (334)
++++++.|+.+ ..+.++|+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 66777777643 4688899864
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.77 E-value=0.16 Score=41.16 Aligned_cols=185 Identities=9% Similarity=0.064 Sum_probs=87.1
Q ss_pred cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----C-------cEEEEEcCCCCC
Q psy2305 78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----S-------EVKIFSTDRPGR 145 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~-------~i~i~d~~~~~~ 145 (334)
.+++.|+. .+..||..+++... ........ .........++..++.|+ . + .+..||..+ .
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~ 88 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYL-TALAEQIP---RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS--S 88 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEE-EEECTTSC---SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTT--T
T ss_pred hhhhcccc--ceEEECCCCCceec-ccCCccCC---ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCC--C
Confidence 34555553 38899998887644 21111011 122233345666666654 1 1 166778764 2
Q ss_pred eeeeecccccccccceEEEEEcCCCCcEEEEeecC-------CeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEE
Q psy2305 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-------KIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILL 216 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l 216 (334)
.....+ ...........+.+ ++. +++.|+.+ ..+.+||..+.+-.. .+......- +++. .+++.+
T Consensus 89 ~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iy 162 (318)
T 2woz_A 89 EWVGLP-PLPSARCLFGLGEV--DDK-IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIY 162 (318)
T ss_dssp EEEECS-CBSSCBCSCEEEEE--TTE-EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEE
T ss_pred cEEECC-CCCccccccceEEE--CCE-EEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEE
Confidence 222211 11111112222222 455 77777764 358889987653221 111111111 1222 466666
Q ss_pred EeeecC-----CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305 217 FSGARK-----DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS 279 (334)
Q Consensus 217 ~~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 279 (334)
+.|+.. -..+.+||+.+ .. -..+..........++.. -++++++.|+.+ ..+.+||+.+.
T Consensus 163 v~GG~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 163 CLGGKTDDKKCTNRVFIYNPKK-GD-WKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EECCEESSSCBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEcCCCCCCCccceEEEEcCCC-CE-EEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 666521 23588899875 22 122211111111111222 256777777653 35778898875
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.75 E-value=0.17 Score=41.02 Aligned_cols=188 Identities=9% Similarity=0.047 Sum_probs=90.1
Q ss_pred CCCcEEEEeeC-----C------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--------Cc
Q psy2305 75 GFTSYFLCSSM-----Y------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--------SE 134 (334)
Q Consensus 75 ~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--------~~ 134 (334)
.++++++.|+. . ..+..||..+++.... ....... .-.+++.. +++.++.|+ + ..
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r---~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPLPSPR---CLFGLGEA-LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCBSSCE---ESCEEEEE-TTEEEEECCEESSTTCCBCCC
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCCCcch---hceeEEEE-CCEEEEEeCCcCCCCCcccce
Confidence 36777777773 1 1277889888765332 2111100 11122222 455555554 2 45
Q ss_pred EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-C-----CeEEEEECCCCCc--eEeeccCCCCeEE
Q psy2305 135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-S-----KIIGLFSDSDGRP--LFFLKGHNGGITH 206 (334)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~--~~~~~~~~~~i~~ 206 (334)
+.+||+.+. .-...+ .+.........+. -+++ +++.|+. + ..+.+||..+.+- +..+......-..
T Consensus 119 ~~~~d~~~~--~W~~~~-~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 192 (315)
T 4asc_A 119 VMCYDRLSF--KWGESD-PLPYVVYGHTVLS--HMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA 192 (315)
T ss_dssp EEEEETTTT--EEEECC-CCSSCCBSCEEEE--ETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred EEEECCCCC--cEeECC-CCCCcccceeEEE--ECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence 888998752 222111 1111111122222 3455 7777776 2 4689999876532 1122111111122
Q ss_pred EEEccCCcEEEeeecCCC-----eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-------------
Q psy2305 207 LEFSSNGILLFSGARKDC-----EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN------------- 268 (334)
Q Consensus 207 ~~~~~~~~~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------------- 268 (334)
+.+ +++.++.|+ .++ .+.+||+.+ .. -..+..........++. .-++++++.|+.+
T Consensus 193 ~~~--~~~iyv~GG-~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~ 266 (315)
T 4asc_A 193 TVH--DGRIIVAAG-VTDTGLTSSAEVYSITD-NK-WAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTE 266 (315)
T ss_dssp EEE--TTEEEEEEE-ECSSSEEEEEEEEETTT-TE-EEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEE
T ss_pred EEE--CCEEEEEec-cCCCCccceEEEEECCC-Ce-EEECCCCCCcccceeEE-EECCEEEEECCccccCcCCccccccc
Confidence 222 667777776 443 578888875 22 22222111111111121 2256777777753
Q ss_pred -CcEEEEeCCCC
Q psy2305 269 -GDLSIWNVNTS 279 (334)
Q Consensus 269 -g~i~iwd~~~~ 279 (334)
..+.+||+.+.
T Consensus 267 ~~~v~~yd~~~~ 278 (315)
T 4asc_A 267 LNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEEEETTTT
T ss_pred cCcEEEecCCCC
Confidence 24778888875
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.54 E-value=0.23 Score=40.02 Aligned_cols=210 Identities=10% Similarity=-0.006 Sum_probs=111.6
Q ss_pred EEEcCCCcEEEEeeCC--------------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce
Q psy2305 7 VDEAPDGTCLLTNSND--------------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS 72 (334)
Q Consensus 7 ~~~sp~~~~l~~~~~d--------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 72 (334)
--++++|.+|+-.... ..|+..+++..+.. .+.. ... ..
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~---------------~l~~---~~~---------~~ 110 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST---------------VLDP---DPC---------IY 110 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE---------------EEEC---SCE---------EE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce---------------Eeec---CCc---------cE
Confidence 3467888888766532 36777777766543 2211 111 12
Q ss_pred ecCCCcEEEEee--CC--CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCe
Q psy2305 73 IDGFTSYFLCSS--MY--APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRE 146 (334)
Q Consensus 73 ~s~~~~~l~~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~ 146 (334)
++++++.|+-.. .+ ..|...++.. .....+... .+ .+++++++.|+-.+ ...|...++. +..
T Consensus 111 ~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~-------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~--g~~ 178 (302)
T 3s25_A 111 ASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH-------YL--FTCNTSDRYFYYNNPKNGQLYRYDTA--SQS 178 (302)
T ss_dssp EEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS-------CC--CCSEEETTEEEEECTTTCCEEEEETT--TTE
T ss_pred EEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC-------Cc--eEeeEECCEEEEEeCCCceEEEEECC--CCC
Confidence 355788877665 33 3455556653 333334321 12 34678888888554 4677777766 443
Q ss_pred eeeecccccccccceEEEEEcCCCCcEEEEeecC--CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec-CC
Q psy2305 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KD 223 (334)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d 223 (334)
... ... .... ..+.|++. +|+-.... ..|..-++.... ...+.. ..+ ..|+|++++|+.+.. ..
T Consensus 179 ~~~---l~~---~~~~-~~~~P~g~-~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~ 245 (302)
T 3s25_A 179 EAL---FYD---CNCY-KPVVLDDT-NVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDN 245 (302)
T ss_dssp EEE---EEC---SCEE-EEEEEETT-EEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSS
T ss_pred EEE---EeC---CCcc-ceeeecCC-EEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCC
Confidence 332 112 1222 23568888 66655433 367777775444 344432 233 347889999887641 23
Q ss_pred CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeC
Q psy2305 224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNV 276 (334)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~ 276 (334)
+.|..-++. +...+.+... .+.. +++.+.+|+-.. ..+.|...++
T Consensus 246 ~~i~~~~~D--G~~r~~l~~~----~~~~--i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 246 PALCVVKND--GTGFKELAKG----EFCN--INVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp CEEEEEETT--SCCCEEEEES----CEEE--EEECSSEEEEEETTTCCEEEEES
T ss_pred cEEEEEECC--CCccEEeeCC----ccce--EEEeCCEEEEEECCCCeEEEEEC
Confidence 455555554 5444444422 1223 345666666544 2344444443
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.51 E-value=0.22 Score=45.39 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=79.7
Q ss_pred CCcEEEEeeCC------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--CcEEEEEcCCCCCe
Q psy2305 76 FTSYFLCSSMY------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--SEVKIFSTDRPGRE 146 (334)
Q Consensus 76 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--~~i~i~d~~~~~~~ 146 (334)
++++++.|+.+ ..+.+||..+.+....-..... ..-.+++...+++.++.|+ + +.+.+||+.+. .
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--~ 524 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE--I 524 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT--E
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCC--c
Confidence 67777887754 3578899888655432111111 0223444434777777765 3 37899998852 2
Q ss_pred eeeecc--cccccccceEEEEEcCC-CCcEEEEeec--C-----CeEEEEECCCCCc-----eEeecc---CCCCeEEEE
Q psy2305 147 CVSRNL--KPWFRKNIVSAIAINPV-HPDICALGTY--S-----KIIGLFSDSDGRP-----LFFLKG---HNGGITHLE 208 (334)
Q Consensus 147 ~~~~~~--~~~~~~~~v~~~~~~~~-~~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~i~~~~ 208 (334)
...... ..........++.+..+ +. +++.|+. + ..+.+||+.+.+- -..+.. ....-.++.
T Consensus 525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~ 603 (695)
T 2zwa_A 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK 603 (695)
T ss_dssp EEECCCSSGGGGSCCBSCEEEEETTTTE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE
T ss_pred eEEccCCCCCCCcccceeEEEEeCCCCE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE
Confidence 221110 01111222234556655 55 7777775 2 4689999987761 111111 111111233
Q ss_pred EccCCcEEEeeecC-------CCeEEEEEccC
Q psy2305 209 FSSNGILLFSGARK-------DCEIICWDLRN 233 (334)
Q Consensus 209 ~~~~~~~l~~~~~~-------d~~i~iwd~~~ 233 (334)
...+++.++.|+.. ...+.+||+.+
T Consensus 604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp EEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred EeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 33346777777621 24588999876
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.37 E-value=0.45 Score=41.52 Aligned_cols=248 Identities=8% Similarity=-0.025 Sum_probs=133.8
Q ss_pred EEEeeCCCeEEEEECCCCCceeeeeCCCC---CCCCc----ceee---------eeeeceeEEEEEEecccceecCCCcE
Q psy2305 16 LLTNSNDNHLRTFDLPSELHCKSVWRPSN---QRPKL----NYTL---------KIKEGGIIYDYVWYPKTSSIDGFTSY 79 (334)
Q Consensus 16 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~~~----~~~~---------~~~~~~~v~~~~~~~~~~~~s~~~~~ 79 (334)
+.+|+..|.|+|+-+.+.+....+.--.. ..+.. ...+ ..||.. +.+. .=..||++
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~----~S~t----dg~yDGry 144 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPH----ISMT----DGKYDGKY 144 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCE----EEEE----TTEEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCc----cccc----CCeeeeEE
Confidence 67888999999999999887654432111 11111 0111 111111 1110 00137788
Q ss_pred EEEeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc--CCCCEEEEeeCCcEEE------EEcCCCCCeeeee
Q psy2305 80 FLCSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS--LDGNKIYAGFLSEVKI------FSTDRPGRECVSR 150 (334)
Q Consensus 80 l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~d~~i~i------~d~~~~~~~~~~~ 150 (334)
|+.-.. ...|...++...++.+.++..+.. .+..++|- |+..++++++.-.+=+ ..++.+.+ . ..
T Consensus 145 lfiNdkan~RvAri~l~~~~~d~Ii~iPn~~----~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~-y-~~ 218 (638)
T 3sbq_A 145 LFINDKANSRVARIRLDIMKCDKMITVPNVQ----AIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENS-Y-TM 218 (638)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTCS----CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTE-E-EE
T ss_pred EEEecCCCcceEEEECCcEeeceeEeCCCCc----CcccccccccCCccEEEecceeeccCCCCCcccccCChhh-c-eE
Confidence 887663 557888888888887776654432 67888886 6777887654222211 11111111 0 00
Q ss_pred ccccccc----------ccceEEEEEcCCCCcEEEEeecCC---------------eEEEEECC-------CCC------
Q psy2305 151 NLKPWFR----------KNIVSAIAINPVHPDICALGTYSK---------------IIGLFSDS-------DGR------ 192 (334)
Q Consensus 151 ~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~i~d~~-------~~~------ 192 (334)
....... ......+...+++. +.++.+.+. .+.++++. .++
T Consensus 219 f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~-~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIVDGNLDNTDADYTGR-FAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEcCCChhhcCCCCCCC-EEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 0000010 11222344566676 555444332 35555541 110
Q ss_pred -ceEeecc---------------CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc--------cceeec-ccccC
Q psy2305 193 -PLFFLKG---------------HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC--------ILHTFP-RQVST 247 (334)
Q Consensus 193 -~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~--------~~~~~~-~~~~~ 247 (334)
-+..+.+ -......+..+|||+++++++-.+.++.++|++.... +...+. .-..+
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 1112211 1123456889999999988876789999999984111 111111 11124
Q ss_pred CceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
...+..+|.++|.-..+--.|..|.-|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 4567789999996666666899999999875
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.36 E-value=0.58 Score=42.66 Aligned_cols=199 Identities=11% Similarity=0.026 Sum_probs=100.8
Q ss_pred CCCcEEEEeeCC----CcEEEEeCCCCeeeEEE-cCc-cccccccceeEEEEcC-CCCEEEEee-C------CcEEEEEc
Q psy2305 75 GFTSYFLCSSMY----APIHLWDSVGGEIKATY-RPY-NQVDEVTHAYSLAFSL-DGNKIYAGF-L------SEVKIFST 140 (334)
Q Consensus 75 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~-d------~~i~i~d~ 140 (334)
.++.+++.|+.+ ..+.+||..+++....- ... ........-.+++..+ +++.++.|+ + +.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 367777787753 46888998877654433 200 0000000123444443 667666664 2 35788888
Q ss_pred CCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC--eEEEEECCCCCceEe-----eccCCCCeEEEEEccC-
Q psy2305 141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK--IIGLFSDSDGRPLFF-----LKGHNGGITHLEFSSN- 212 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~i~~~~~~~~- 212 (334)
.+. ...... ....... -.+++...++. +++.|+.++ .+.+||..+.+-... +.........+.+..+
T Consensus 476 ~t~--~W~~~~-~~p~~R~-~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 476 KTR--EWSMIK-SLSHTRF-RHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTT--EEEECC-CCSBCCB-SCEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCC--cEEECC-CCCCCcc-cceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 752 222111 1111111 12333334677 888887655 699999877532111 1111122233555555
Q ss_pred CcEEEeeecC--C-----CeEEEEEccCCCc----cceeeccc-ccCCceEEEEecCCCceEEeeecC--------CcEE
Q psy2305 213 GILLFSGARK--D-----CEIICWDLRNPGC----ILHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTN--------GDLS 272 (334)
Q Consensus 213 ~~~l~~~~~~--d-----~~i~iwd~~~~~~----~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d--------g~i~ 272 (334)
++.++.|+ . + ..+.+||+.+..- ....+... .....-.++....++++++.|+.+ ..+.
T Consensus 551 ~~iyv~GG-~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGG-GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECC-BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECC-cCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 66777776 3 2 4588999886320 01111110 011111122223337777877743 4689
Q ss_pred EEeCCCC
Q psy2305 273 IWNVNTS 279 (334)
Q Consensus 273 iwd~~~~ 279 (334)
+||+.+.
T Consensus 630 ~yd~~t~ 636 (695)
T 2zwa_A 630 SLDPLSE 636 (695)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9999876
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.33 E-value=0.32 Score=39.35 Aligned_cols=189 Identities=9% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCCcEEEEeeC----CC-------cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-------CcE
Q psy2305 75 GFTSYFLCSSM----YA-------PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-------SEV 135 (334)
Q Consensus 75 ~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-------~~i 135 (334)
.++.+++.|+. ++ .+..||..+++....-...... .-.+++.. +++.++.|+ + ..+
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR----CLFGLGEV-DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB----CSCEEEEE-TTEEEEEEEEBTTTCCEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc----cccceEEE-CCEEEEEcCccCCCCcccceE
Confidence 46777788773 11 1778898877654321111110 11222222 556656554 3 357
Q ss_pred EEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCceE--eeccCCCCeEEE
Q psy2305 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRPLF--FLKGHNGGITHL 207 (334)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~i~~~ 207 (334)
.+||+.+ ..-.... ......... +++. .++. +++.|+.+ ..+.+||+.+.+-.. .+....... ++
T Consensus 130 ~~yd~~~--~~W~~~~-~~p~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~ 202 (318)
T 2woz_A 130 LCYDPVA--AKWSEVK-NLPIKVYGH-NVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF-GV 202 (318)
T ss_dssp EEEETTT--TEEEEEC-CCSSCEESC-EEEE-ETTE-EEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EE
T ss_pred EEEeCCC--CCEeECC-CCCCccccc-EEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc-eE
Confidence 7888875 2222111 111111111 2222 3555 77777642 358999987753221 121111111 22
Q ss_pred EEccCCcEEEeeecCC----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC--------------C
Q psy2305 208 EFSSNGILLFSGARKD----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN--------------G 269 (334)
Q Consensus 208 ~~~~~~~~l~~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--------------g 269 (334)
+. -+++.++.|+..+ ..+.+||+.+ .. -..+..........++. .-++++++.|+.+ .
T Consensus 203 ~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 203 AI-HKGKIVIAGGVTEDGLSASVEAFDLKT-NK-WEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EE-ETTEEEEEEEEETTEEEEEEEEEETTT-CC-EEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EE-ECCEEEEEcCcCCCCccceEEEEECCC-Ce-EEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceee
Confidence 22 2567777766212 3467888875 22 11221110111111121 2356777777653 3
Q ss_pred cEEEEeCCCC
Q psy2305 270 DLSIWNVNTS 279 (334)
Q Consensus 270 ~i~iwd~~~~ 279 (334)
.+.+||+.+.
T Consensus 279 ~v~~yd~~~~ 288 (318)
T 2woz_A 279 DIWKYEDDKK 288 (318)
T ss_dssp CEEEEETTTT
T ss_pred eEEEEeCCCC
Confidence 5778888775
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.21 E-value=0.41 Score=39.41 Aligned_cols=138 Identities=7% Similarity=-0.081 Sum_probs=60.5
Q ss_pred CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-------CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-------LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
..+.+||+.+.+....-....... .-.+++.. ++++++.|+ ...+..||++.....-.... .+.....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~---~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~-~~~~~~~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGT---AGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA-PVSSPDG 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCC---BSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECC-CSSTTTC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCc---ccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecC-CCCCCcc
Confidence 468899998876543322111100 10233333 455555543 23577787732122222211 1111111
Q ss_pred ceEEEEEcCCCCcEEEEeecC----------------------CeEEEEECCCCC--ceEeeccCCCCeEEEEEccCCcE
Q psy2305 160 IVSAIAINPVHPDICALGTYS----------------------KIIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGIL 215 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 215 (334)
.....+...++. +++.|+.+ ..+.+||+.+.+ .+..+......-.+ ..-+++.
T Consensus 243 ~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i 319 (357)
T 2uvk_A 243 VAGGFAGISNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSL 319 (357)
T ss_dssp CBSCEEEEETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEE
T ss_pred cccceEEEECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEE
Confidence 111112223455 77777743 257889987653 23333222222122 2346777
Q ss_pred EEeeecCCC------eEEEEEccC
Q psy2305 216 LFSGARKDC------EIICWDLRN 233 (334)
Q Consensus 216 l~~~~~~d~------~i~iwd~~~ 233 (334)
++.|+ .++ .+.+++++.
T Consensus 320 ~v~GG-~~~~~~~~~~v~~l~~~~ 342 (357)
T 2uvk_A 320 LIIGG-ETAGGKAVTDSVLITVKD 342 (357)
T ss_dssp EEEEE-ECGGGCEEEEEEEEEC-C
T ss_pred EEEee-eCCCCCEeeeEEEEEEcC
Confidence 77777 442 355567765
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.16 E-value=0.75 Score=45.03 Aligned_cols=234 Identities=10% Similarity=0.106 Sum_probs=128.2
Q ss_pred EcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCc
Q psy2305 9 EAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAP 88 (334)
Q Consensus 9 ~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~ 88 (334)
.+|..+.+|.=. ..+++|||+++.... +.... ...|.-=.|- ++ +.|+..+ +..
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~kl--------------ks~~~--~e~VvfWkWi------s~--~~l~lVT-~~a 126 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKM--------------KAHTM--TDDVTFWKWI------SL--NTVALVT-DNA 126 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhh--------------ccccc--CCCceEEEec------CC--CeeEEEc-CCe
Confidence 466666665543 567888888876654 12221 2334333452 33 3444443 457
Q ss_pred EEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCCCEEE-Ee------e-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305 89 IHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AG------F-LSEVKIFSTDRPGRECVSRNLKPWFRKN 159 (334)
Q Consensus 89 i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~------~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (334)
|.-|++... ...+.+..+.... ...|.....+++.++++ +| . .|.+.+|.++. +..+ .+.+|..
T Consensus 127 VyHW~~~~~s~P~k~fdR~~~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~~sQ----~iegha~ 199 (1630)
T 1xi4_A 127 VYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQ----PIEGHAA 199 (1630)
T ss_pred EEEeccCCCCccHHHHhcchhcc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--ccch----hhhHhHh
Confidence 999999642 3344444433222 12788888899999887 33 1 47899999874 2222 4566755
Q ss_pred ceEEEEEc--CCCCcEEEEeec---CCeEEEEECCCC---CceE------eecc---CCCCeEEEEEccCCcEEEeeecC
Q psy2305 160 IVSAIAIN--PVHPDICALGTY---SKIIGLFSDSDG---RPLF------FLKG---HNGGITHLEFSSNGILLFSGARK 222 (334)
Q Consensus 160 ~v~~~~~~--~~~~~~l~~~~~---dg~i~i~d~~~~---~~~~------~~~~---~~~~i~~~~~~~~~~~l~~~~~~ 222 (334)
....+... +....+++.+.. .+.++|.++... .+.. .+.. ...-..++..++.-..++..+ .
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it-k 278 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-K 278 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe-c
Confidence 44444332 222214443322 378999998442 1111 1111 122234667777666788888 8
Q ss_pred CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
-|.|.+||+.+ +.++..-. .....+...+-+....-++.....|.|.--.+...
T Consensus 279 ~G~~~~~d~~t-~~~i~~~r--is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 279 YGYIHLYDLET-GTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred CceEEEEeccc-chhhhhcc--ccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 99999999998 66554333 22333333332333333444446676666666554
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.58 E-value=0.14 Score=44.63 Aligned_cols=105 Identities=12% Similarity=-0.025 Sum_probs=66.5
Q ss_pred ceeEEEEcCCCCEEEEee--CCcEEEEEcCCC-----CCeeeeecc--cccccccceEEEEEcCCCCcEEEEeecCCeEE
Q psy2305 114 HAYSLAFSLDGNKIYAGF--LSEVKIFSTDRP-----GRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIG 184 (334)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~-----~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 184 (334)
....+..+|||+++++++ +.++.++|++.- ++.+..... ....-.-.....+|.++|. ...+-..|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-AYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-eEeeeeecceEE
Confidence 567899999999999776 899999998841 111000000 0111223456789999996 677777899999
Q ss_pred EEECCCC----------CceEeeccCCCCeEEEEE------ccCCcEEEeee
Q psy2305 185 LFSDSDG----------RPLFFLKGHNGGITHLEF------SSNGILLFSGA 220 (334)
Q Consensus 185 i~d~~~~----------~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~ 220 (334)
.|++... ..+..+.-|-.+- .+.- .|+|++|++..
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 9998542 3444554443322 2222 56788887764
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.49 E-value=1.5 Score=40.36 Aligned_cols=247 Identities=11% Similarity=0.070 Sum_probs=126.3
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCce--eeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHC--KSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF 80 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l 80 (334)
.|.++.-..+|.+.+ |+.+| +..++..++... ..+... ... . ......|.++.- +.++++.
T Consensus 325 ~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~-~~~----~---~l~~~~v~~i~~-------d~~g~lW 387 (758)
T 3ott_A 325 QFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMG-DKT----Y---PLSHNRIRHIYE-------DKEQQLW 387 (758)
T ss_dssp BEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTT-CSS----S---CCSCSCEEEEEE-------CTTSCEE
T ss_pred eEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccC-CcC----C---CCCCCceEEEEE-------CCCCCEE
Confidence 477787777776544 44555 556665543211 000000 000 0 001234655543 5567654
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEc-CccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCC----CCCeee---eecc
Q psy2305 81 LCSSMYAPIHLWDSVGGEIKATYR-PYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDR----PGRECV---SRNL 152 (334)
Q Consensus 81 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~----~~~~~~---~~~~ 152 (334)
+ |+. +-+..+|..+++...... ..........|.++...++|.+.+....+-+..+|..+ ...... ...
T Consensus 388 i-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~- 464 (758)
T 3ott_A 388 I-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS- 464 (758)
T ss_dssp E-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC-
T ss_pred E-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccc-
Confidence 4 443 458899988876543221 11000011257888888887765544466688888652 011111 000
Q ss_pred cccc-cccceEEEEEcCCCCcEEE-EeecCCeEEEEECCCCCceEeecc---CCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305 153 KPWF-RKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSDGRPLFFLKG---HNGGITHLEFSSNGILLFSGARKDCEII 227 (334)
Q Consensus 153 ~~~~-~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 227 (334)
...+ ....|.++...++|. +-+ .++. +-|..+|.++++....... ....+.++....+|.+.+ ++ ..| +.
T Consensus 465 ~~~~l~~~~i~~i~~d~~g~-lWi~~~t~-~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt-~~G-l~ 539 (758)
T 3ott_A 465 VHNGLSGMFINQIIPDNEGN-VWVLLYNN-KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GF-HGG-VM 539 (758)
T ss_dssp GGGTCSCSCEEEEEECTTSC-EEEEETTC-SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EE-TTE-EE
T ss_pred cccccccceeeeEEEcCCCC-EEEEccCC-CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-Ee-cCc-eE
Confidence 0111 123588999999887 444 2444 5588899876644332111 124577888888886554 55 444 77
Q ss_pred EEEccCCCccceeec-ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 228 CWDLRNPGCILHTFP-RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 228 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
.+|..+ .. ...+. .......+.++... +|.+.+ ++.+| |..+|..+.
T Consensus 540 ~~~~~~-~~-~~~~~~~gl~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 540 RINPKD-ES-QQSISFGSFSNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTM 587 (758)
T ss_dssp EECC---CC-CCBCCCCC---CCEEEEEEE-TTEEEE-EESSC-EEEEETTTC
T ss_pred EEecCC-Cc-eEEecccCCCccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCc
Confidence 888764 22 22221 11113346666543 565444 44555 778888775
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.96 Score=36.98 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=79.3
Q ss_pred cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe-eCCCcEEEE
Q psy2305 14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS-SMYAPIHLW 92 (334)
Q Consensus 14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~-~~d~~i~iw 92 (334)
..++.++.||.|.-+|..+++..-.+... ...++..... |. ...++..++.. ..||.|..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--------------~~~p~~~~~~-~~---~~~~~~~~vv~p~~dG~l~a~ 72 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--------------NFQPLIEIQE-PS---RLETYETLIIEPFGDGNIYYF 72 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--------------GSCCSEECCC-SC---TTTSSEEEEECCSTTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--------------ccCCcEEecC-Cc---cccCCcEEEEEECCCCEEEEE
Confidence 47888999999999999999876322211 0011111000 00 01133444443 589999999
Q ss_pred eCCCCeeeEEEcCccccccccceeE---EEE-----cCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc----
Q psy2305 93 DSVGGEIKATYRPYNQVDEVTHAYS---LAF-----SLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN---- 159 (334)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~v~~---~~~-----~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~---- 159 (334)
+..+|.....+....... ..++.. ... ...+..+++|+ ++.+...|+.+ |+.+..... .....
T Consensus 73 ~~~~G~~~~~~~~~~lv~-~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~~ 148 (339)
T 2be1_A 73 NAHQGLQKLPLSIRQLVS-TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN-GEIISAFGP--GSKNGYFGS 148 (339)
T ss_dssp ETTTEEEEEEEEHHHHHT-TCSEEEECC----------CCEEEEECEEEEEEEEEETTT-CCEEEEEST--TCBCC----
T ss_pred ECCCCcEEeeecccccee-ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC-CcEEEEEec--CCCcccccc
Confidence 998886655444321110 001111 000 00344566676 99999999998 776664321 11001
Q ss_pred -ceEEEEEc-----CCCCcEEEEeecCCeEEEEECCCCC
Q psy2305 160 -IVSAIAIN-----PVHPDICALGTYSKIIGLFSDSDGR 192 (334)
Q Consensus 160 -~v~~~~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~ 192 (334)
...|.... ..+. .++.+..+..+.+.+ ++++
T Consensus 149 ~~e~~~~~~d~~~d~~~~-~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 149 QSVDCSPEEKIKLQECEN-MIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp ----------------CC-EEEEEEEEEECEECC-TTSC
T ss_pred cccccccccccccccCCC-eEEEecceEEEEEEC-CCCC
Confidence 01111111 1133 677777777777777 4553
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.05 E-value=2.1 Score=39.42 Aligned_cols=239 Identities=15% Similarity=0.102 Sum_probs=125.7
Q ss_pred ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305 3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC 82 (334)
Q Consensus 3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~ 82 (334)
.|.++....+|.+.+ |+..| |..++..+.+... +..+.. .......|.++.. .+++..|..
T Consensus 147 ~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~-~~~~~~---------~~~~~~~i~~i~~-------d~~~~~lWi 207 (758)
T 3ott_A 147 TIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEG-IPLPVH---------SSQSNLFVNSLLE-------DTTRQCVWI 207 (758)
T ss_dssp CEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEE-ECCCCC---------TTCSSCCEEEEEE-------ETTTTEEEE
T ss_pred eEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEE-ecCCCc---------cccccceeEEEEE-------ECCCCEEEE
Confidence 467777777777554 44444 7778876654321 000000 0001123555544 445554445
Q ss_pred eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc----ccccc
Q psy2305 83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK----PWFRK 158 (334)
Q Consensus 83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~ 158 (334)
|+. +-+..+|..+++.......... .|.++...++|.+.+.. ++-+.+++..+ + ........ ..-..
T Consensus 208 gt~-~Gl~~~~~~~~~~~~~~~l~~~-----~i~~i~~d~~g~lWigT-~~Gl~~~~~~~-~-~~~~~~~~~~~~~~l~~ 278 (758)
T 3ott_A 208 GTE-GYLFQYFPSTGQIKQTEAFHNN-----SIKSLALDGNGDLLAGT-DNGLYVYHNDT-T-PLQHIIHDSRNIQSLTN 278 (758)
T ss_dssp EEE-EEEEEEETTTTEEEEEEEEEEE-----EEEEEEECTTCCEEEEE-TTEEEEECCTT-S-CCEEECCCTTCTTSCSC
T ss_pred EEC-CCCeEEcCCCCeEEeccCCCCC-----eEEEEEEcCCCCEEEEe-CCceeEEecCC-C-cEEEEEcCCCCcCcCCc
Confidence 553 3488889877654322111111 68888888888766654 45577888764 2 22211000 01123
Q ss_pred cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-------cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-------GHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~ 231 (334)
..|.++....+|. |..|+..| +.++... . ....+. .....|.++.-.++|.+. .|+ .+| +..++.
T Consensus 279 ~~i~~i~~D~~g~--lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt-~~G-l~~~~~ 350 (758)
T 3ott_A 279 NIIWNIFADQEHN--IWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGG-ANG-LIRFTD 350 (758)
T ss_dssp SCEEEEEECTTCC--EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEE-TTE-EEEESC
T ss_pred CeEEEEEEcCCCC--EEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCCEE-Eee-CCc-ceeecc
Confidence 4688998888886 55566666 5554432 2 111111 123468888888777654 455 455 555554
Q ss_pred cCCC-ccceeecc-----cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 232 RNPG-CILHTFPR-----QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 232 ~~~~-~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
.+.. .....+.. ......+.++.-..+|++.+ |+ ++-|..||..++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~ 402 (758)
T 3ott_A 351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR 402 (758)
T ss_dssp TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred cccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence 4311 11111211 11234577777677776554 44 456899998775
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.69 E-value=3.1 Score=35.77 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=32.3
Q ss_pred cccceecCCCc-EEEEeeCCCcEEEEeCCCCe---eeEEEcCcccc----ccccceeEEEEcCC
Q psy2305 68 PKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGE---IKATYRPYNQV----DEVTHAYSLAFSLD 123 (334)
Q Consensus 68 ~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~----~~~~~v~~~~~~~~ 123 (334)
|..|+|.|++. .|+++.+.|.|++++..... .+..+...... ........|+|+|+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 44567788986 45556778999999753221 12222211000 00126789999997
No 351
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=91.31 E-value=5.6 Score=33.06 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=97.2
Q ss_pred cEEEEeCCCC--eeeEEEcCccc-cccccceeEEEEc---CC----CCEEEEee--CCcEEEEEcCCCCCeeeeeccc--
Q psy2305 88 PIHLWDSVGG--EIKATYRPYNQ-VDEVTHAYSLAFS---LD----GNKIYAGF--LSEVKIFSTDRPGRECVSRNLK-- 153 (334)
Q Consensus 88 ~i~iwd~~~~--~~~~~~~~~~~-~~~~~~v~~~~~~---~~----~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~-- 153 (334)
.|.+||+.++ +.++.+..... ....+.+..+++. |+ +.+++.+. ...|.++|+.+ ++..+...-.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~-~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK-QDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT-TEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC-CcEEEEccCCCc
Confidence 5889999999 88888766422 1222367888887 22 34444443 68899999986 4333221000
Q ss_pred --------cccc----ccceEEEEEcCC----CCcEEEEeecCC-eEEEEE---CCCC---CceEeec--cCCCCeEEEE
Q psy2305 154 --------PWFR----KNIVSAIAINPV----HPDICALGTYSK-IIGLFS---DSDG---RPLFFLK--GHNGGITHLE 208 (334)
Q Consensus 154 --------~~~~----~~~v~~~~~~~~----~~~~l~~~~~dg-~i~i~d---~~~~---~~~~~~~--~~~~~i~~~~ 208 (334)
..+. ...+..++++|+ ++ .|......+ .++-.. +++. ..++.+- +....-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~-~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNR-PAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCC-EEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCe-EEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 0111 246888999998 66 555554433 344333 1222 2222221 1113344567
Q ss_pred Ec-cCCcEEEeeecCCCeEEEEEccC-CC--ccceeecccccCCceEEEEecCCCceEEee
Q psy2305 209 FS-SNGILLFSGARKDCEIICWDLRN-PG--CILHTFPRQVSTNQRVYFDLTSCSNYLLSG 265 (334)
Q Consensus 209 ~~-~~~~~l~~~~~~d~~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 265 (334)
+. .+|..+++-- ....|..|+... +- .....+.....-.....+.+.++|.+.+..
T Consensus 282 ~D~~~G~ly~~~~-~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEA-NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEES-SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEec-cCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 75 5777666666 789999999874 21 122333322233455566666666554444
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.22 E-value=7.7 Score=36.83 Aligned_cols=32 Identities=9% Similarity=-0.034 Sum_probs=27.6
Q ss_pred cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcC
Q psy2305 74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRP 105 (334)
Q Consensus 74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 105 (334)
.++..++++-+.|+++++|++.+++++.+...
T Consensus 244 ~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 244 LSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp ETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred cCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 56778999999999999999999998877543
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.52 E-value=5.5 Score=31.55 Aligned_cols=168 Identities=11% Similarity=0.026 Sum_probs=87.2
Q ss_pred CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEE
Q psy2305 86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIA 165 (334)
Q Consensus 86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (334)
||.|..|-......+-. .. .. ...|..++..... .++.. +|.|..|-....++.-.. ......|..++
T Consensus 80 ~G~v~~wG~n~~Gqlg~-P~--~~--~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~-----~~~~~~i~~i~ 147 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTV-PA--EA--RSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVP-----AEAQSGVTALD 147 (282)
T ss_dssp TTEEEEEECCTTSTTCC-CG--GG--SSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCC-----GGGGSSEEEEE
T ss_pred CCEEEEeeCCCCCCCCC-Cc--cc--CCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCC-----ccCCCCeEEEE
Confidence 88888886443211110 00 00 1156677665543 34444 899999987754443221 12234577776
Q ss_pred EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305 166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245 (334)
Q Consensus 166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 245 (334)
..... .++ -. ||.|+.|-......+..-..-...|..++...+. .++. . ||.++.|-....++.-....
T Consensus 148 ~G~~~--~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al-~--~G~v~~wG~n~~gqlg~p~~--- 216 (282)
T 3qhy_B 148 GGVYT--ALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL-K--DGKVIAWGDNRYKQTTVPTE--- 216 (282)
T ss_dssp ECSSE--EEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E--TTEEEEEECCTTSTTCCCGG---
T ss_pred cccCE--EEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE-E--CCeEEEEECCCCCCCCCCcc---
Confidence 65443 233 23 7999999865432221111123467777665433 3333 4 89999998776444321111
Q ss_pred cCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 246 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
....+..++..... .++. . ||.|+.|=....
T Consensus 217 ~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 217 ALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp GGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred cCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence 12234455433332 2333 3 899999966553
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.28 E-value=12 Score=31.16 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=72.9
Q ss_pred ceeEEEEcCC-CCEEEEe-eCCcEEEEEcCCCCCeeeeecccccc---------cccceEEEEEcCCCCcEEEEeecCCe
Q psy2305 114 HAYSLAFSLD-GNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWF---------RKNIVSAIAINPVHPDICALGTYSKI 182 (334)
Q Consensus 114 ~v~~~~~~~~-~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (334)
.+.+|.+.|. ...|+.+ .++.|.. ....++........... ....+.++.++|.....+..+... .
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~--s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-g 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFE--STDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-G 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEE--ESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEE--ECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-e
Confidence 5789999984 3444444 3544433 33224333321100000 013588999999743266666544 4
Q ss_pred EEEEECCCCCceEeecc--CC---CCeEEEEEccC-CcEEEeeec----------CCCeEEEEEccCCCccceeeccccc
Q psy2305 183 IGLFSDSDGRPLFFLKG--HN---GGITHLEFSSN-GILLFSGAR----------KDCEIICWDLRNPGCILHTFPRQVS 246 (334)
Q Consensus 183 i~i~d~~~~~~~~~~~~--~~---~~i~~~~~~~~-~~~l~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~ 246 (334)
|...+ ..++.-..+.. .. ..+..+.++|. ...|+++.. .++...+|.....++.-..+.....
T Consensus 255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 55444 22332222221 11 23567888763 334444430 1334566766553443333321111
Q ss_pred C------CceEEEEecCC-CceEEeeecCCcEEE
Q psy2305 247 T------NQRVYFDLTSC-SNYLLSGNTNGDLSI 273 (334)
Q Consensus 247 ~------~~~~~~~~s~~-~~~l~~~~~dg~i~i 273 (334)
. .....++++|. ...|+.++.++.|..
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 1 01124667774 345666665555543
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.59 E-value=14 Score=30.62 Aligned_cols=162 Identities=9% Similarity=0.119 Sum_probs=93.0
Q ss_pred ceeEEEEcCCCCEEE--Eee-C-------------CcEEEEEcCCCC--Ceeeeecc--cccccccceEEEEEc---CC-
Q psy2305 114 HAYSLAFSLDGNKIY--AGF-L-------------SEVKIFSTDRPG--RECVSRNL--KPWFRKNIVSAIAIN---PV- 169 (334)
Q Consensus 114 ~v~~~~~~~~~~~l~--~~~-d-------------~~i~i~d~~~~~--~~~~~~~~--~~~~~~~~v~~~~~~---~~- 169 (334)
.|..+...+.+++-+ +|. + -.|.+||+.+ + +.++...+ ........+..+++. |.
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t-~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQ-PNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSS-TTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCC-CCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 567777777666554 231 1 1467888887 4 55554322 112234567888887 32
Q ss_pred --CCcEEEEe-ecCCeEEEEECCCCCceEeec--------------cC----CCCeEEEEEccC----CcEEEeeecCCC
Q psy2305 170 --HPDICALG-TYSKIIGLFSDSDGRPLFFLK--------------GH----NGGITHLEFSSN----GILLFSGARKDC 224 (334)
Q Consensus 170 --~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~--------------~~----~~~i~~~~~~~~----~~~l~~~~~~d~ 224 (334)
+..++... ...+.|.+||+.+++.-+.+. +. ...+..|+++|+ ++.|+... ..+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p-lss 245 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA-GSA 245 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE-SSC
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE-CCC
Confidence 12244433 346789999998876544431 10 236888999998 78888776 443
Q ss_pred eEEEEEccC-----C--CccceeecccccCCceEEEEec-CCCceEEeeecCCcEEEEeCCC
Q psy2305 225 EIICWDLRN-----P--GCILHTFPRQVSTNQRVYFDLT-SCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 225 ~i~iwd~~~-----~--~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
-++|.+.+ . ...++.+...........+++. .+|.++++--....|..|+..+
T Consensus 246 -~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 246 -IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred -CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 34444432 1 1112222111111334455665 6787777777788999999876
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.40 E-value=21 Score=33.92 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=29.8
Q ss_pred CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305 203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240 (334)
Q Consensus 203 ~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~ 240 (334)
.+.+++..++..++++-+ .|+++|+|++.+ ++++.+
T Consensus 237 ~~~~~~~~~~~~~lftl~-~D~~LRiWsl~t-~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLS-LDYKLKVLDLST-NQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEE-TTCEEEEEETTT-TEEEEE
T ss_pred eEEEEeecCCCcEEEEEE-CCCEEEEEECCC-CCeEee
Confidence 467788888888999999 799999999988 655544
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.39 E-value=15 Score=30.53 Aligned_cols=110 Identities=14% Similarity=0.010 Sum_probs=55.4
Q ss_pred ceeEEEEcCC--CCEEEEe-eCCcEEEEEcCCCCCeeeeeccccc----------------ccccceEEEEEcCCCCcEE
Q psy2305 114 HAYSLAFSLD--GNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPW----------------FRKNIVSAIAINPVHPDIC 174 (334)
Q Consensus 114 ~v~~~~~~~~--~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l 174 (334)
.|.++++.|. ...|.++ ..+.|... ...++...... ... .....+.+|.++|.....+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~tW~~~~-~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l 192 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGASWEPVA-GFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHL 192 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTSBCEECH-HHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCCCeEECc-CccCCccccccccccccCCCCCCceeEEEECCCCCCEE
Confidence 5778999872 3445544 45554443 32244333211 010 1123578999998432245
Q ss_pred EEeecCCeEEEEECCCCCceEeecc-----C--------CCCeEEEEEccC-CcEEEeeecCCCeEEEE
Q psy2305 175 ALGTYSKIIGLFSDSDGRPLFFLKG-----H--------NGGITHLEFSSN-GILLFSGARKDCEIICW 229 (334)
Q Consensus 175 ~~~~~dg~i~i~d~~~~~~~~~~~~-----~--------~~~i~~~~~~~~-~~~l~~~~~~d~~i~iw 229 (334)
..+..++.|...+ ..++.-..+.. + ...+.++.+.|. ...|+++. ..+ |...
T Consensus 193 ~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-~~g-l~~s 258 (394)
T 3b7f_A 193 YIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-HCG-IYRM 258 (394)
T ss_dssp EEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-TTE-EEEE
T ss_pred EEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-CCe-EEEe
Confidence 5565555555443 22332222210 0 124889999986 35666676 444 4433
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=82.16 E-value=5.2 Score=35.51 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=39.5
Q ss_pred cccceecCCCcEEEEeeCC------------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305 68 PKTSSIDGFTSYFLCSSMY------------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (334)
|-.|.|+|.|++++.-..+ ..+.+.+..+++..+.+..... +.++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g----aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT----CEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC----ccCcCeeECCCCCEEEEE
Confidence 3446778999876654322 2355557777777666655332 279999999999888754
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=80.05 E-value=11 Score=33.24 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=43.0
Q ss_pred cceEEEEEcCCCCcEEE-Eeec-----------CCeEEEEECCCCCceEeeccC-CCCeEEEEEccCCcEEEeee
Q psy2305 159 NIVSAIAINPVHPDICA-LGTY-----------SKIIGLFSDSDGRPLFFLKGH-NGGITHLEFSSNGILLFSGA 220 (334)
Q Consensus 159 ~~v~~~~~~~~~~~~l~-~~~~-----------dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~ 220 (334)
.....|.|.++|. +.+ +-.. ...+..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3467899999998 544 3211 126777787778766655543 35689999999999888776
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=79.91 E-value=7.2 Score=34.33 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=38.6
Q ss_pred cccceecCCCcEEEEeeC------------CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305 68 PKTSSIDGFTSYFLCSSM------------YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130 (334)
Q Consensus 68 ~~~~~~s~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (334)
|..+.|+++|.+.+.... ...+..++..+++....+..... ..++.++|+||++.|+++
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~----aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT----CEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC----ccccCCEECCCCCEEEEE
Confidence 444667889987773321 12466667777876655543211 168999999999988865
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=75.49 E-value=14 Score=33.54 Aligned_cols=30 Identities=13% Similarity=0.360 Sum_probs=26.5
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCeeeEEEcC
Q psy2305 76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRP 105 (334)
Q Consensus 76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 105 (334)
+..++++-+.|.++|+|++.+++++.....
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 577999999999999999999998877655
No 362
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=75.27 E-value=49 Score=30.20 Aligned_cols=201 Identities=9% Similarity=0.007 Sum_probs=100.9
Q ss_pred ecCCCcEEEEe-eC----CCcEEEEeCCCCeeeE-EEcCccccc--cccceeEEEEcCCCCEEEEee-----------CC
Q psy2305 73 IDGFTSYFLCS-SM----YAPIHLWDSVGGEIKA-TYRPYNQVD--EVTHAYSLAFSLDGNKIYAGF-----------LS 133 (334)
Q Consensus 73 ~s~~~~~l~~~-~~----d~~i~iwd~~~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-----------d~ 133 (334)
++|++++++.+ +. -..++++|+.+++.+. .+......+ .......++|..+...+++.. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 58899887764 22 2378999999998763 111000000 000113447764444444321 24
Q ss_pred cEEEEEcCCCCCeeeeecccccccccc-eEEEEEcCCCCc----EEEEee---cCCeEEEEECCCC-CceEeeccCCCCe
Q psy2305 134 EVKIFSTDRPGRECVSRNLKPWFRKNI-VSAIAINPVHPD----ICALGT---YSKIIGLFSDSDG-RPLFFLKGHNGGI 204 (334)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~----~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~i 204 (334)
.|+.|.+.++...-.. .+.+.... -.+...+++++. .+++.+ ....+++.|.... .....+......
T Consensus 217 ~v~~~~~Gt~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 292 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKK---LFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA- 292 (711)
T ss_dssp EEEEEETTSCGGGCEE---EEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC-
T ss_pred EEEEEECCCChHHCeE---EeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc-
Confidence 6888888763222221 22222222 334556777663 244333 2245677776532 122333222221
Q ss_pred EEEEEccCCcEEEeeec---------CCCeEEEEEccCCC------ccceeecccccCCceEEEEecCCCceEEeeecCC
Q psy2305 205 THLEFSSNGILLFSGAR---------KDCEIICWDLRNPG------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG 269 (334)
Q Consensus 205 ~~~~~~~~~~~l~~~~~---------~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 269 (334)
.+..++++.+++.... ..+.|...|+.... .....+-.+.....+..+.+..+ .++++...++
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~ 370 (711)
T 4hvt_A 293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNV 370 (711)
T ss_dssp -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETT
T ss_pred -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECC
Confidence 2334556665553310 35678889987621 12223222323445667788765 5666666666
Q ss_pred --cEEEEeCCCC
Q psy2305 270 --DLSIWNVNTS 279 (334)
Q Consensus 270 --~i~iwd~~~~ 279 (334)
.+.++++.++
T Consensus 371 ~~~l~~~~~~~g 382 (711)
T 4hvt_A 371 VAKVVTFTLENE 382 (711)
T ss_dssp EEEEEEECEETT
T ss_pred EEEEEEEECCCC
Confidence 4677777655
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=70.66 E-value=39 Score=27.01 Aligned_cols=192 Identities=9% Similarity=-0.016 Sum_probs=98.4
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCeeeE---------EEcCccccccccceeEEEEc-CCCCEEEEeeCCcEEEEE---cCC
Q psy2305 76 FTSYFLCSSMYAPIHLWDSVGGEIKA---------TYRPYNQVDEVTHAYSLAFS-LDGNKIYAGFLSEVKIFS---TDR 142 (334)
Q Consensus 76 ~~~~l~~~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~d~~i~i~d---~~~ 142 (334)
+..++++.+.+|.|+--.+.+-+... .++... .+..+... .....|+..+.|.+.-+. +..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D------~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~ 75 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED------FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 75 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------C------CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCC------EEEEEEEECCCCEEEEEECCCEEEEEEhhHCcC
Confidence 56678888999999877664322111 111111 33333333 333444455577755544 333
Q ss_pred CCCeeeee----cccccccccceEEEEEc---CCCCcEEEEeecCCeEEEEECCCC-------CceEeeccCCCCeEEEE
Q psy2305 143 PGRECVSR----NLKPWFRKNIVSAIAIN---PVHPDICALGTYSKIIGLFSDSDG-------RPLFFLKGHNGGITHLE 208 (334)
Q Consensus 143 ~~~~~~~~----~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~ 208 (334)
.++...-. .+.+. ....|.++..- .++. +++..+.+|.++-..+..- .....+..+ ..+..+.
T Consensus 76 ~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~ 152 (307)
T 1zi0_A 76 ATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVD 152 (307)
T ss_dssp CCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEE
T ss_pred CCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEE
Confidence 22110000 00122 23345555432 3445 7888999999999877421 112223333 4555555
Q ss_pred EccCCcEEEeeecCCCeEEEEEccCCC---c---cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 209 FSSNGILLFSGARKDCEIICWDLRNPG---C---ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~---~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
.......++..+ .+|.+..++...-. . -...+.- .....+.++..-+++..++..+..|.++-.++..
T Consensus 153 ~~~~~~~i~l~T-~~G~~irf~~~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 153 LTSGEDEVMLFS-AEGKVVRFKESSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EECTTCEEEEEE-TTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EeCCCCEEEEEC-CCCcEEEEEHHHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 544455677777 78988888775310 0 0111111 1234566665445566788888899988887643
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=69.93 E-value=66 Score=29.37 Aligned_cols=237 Identities=10% Similarity=0.036 Sum_probs=114.6
Q ss_pred EEE-EcCCCcEEEEe-----eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeece-----eEEEEEEeccccee
Q psy2305 6 DVD-EAPDGTCLLTN-----SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGG-----IIYDYVWYPKTSSI 73 (334)
Q Consensus 6 ~~~-~sp~~~~l~~~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~~~ 73 (334)
.+. ++|++++++.+ +.-..++++|+.+++... ..+. ....+ ....++|
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~-------------~~~~~~~k~~~~~~~~~~~~~W------- 192 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK-------------NGFEPITNSGKLLEGKFTYPTW------- 192 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT-------------TCSCCBCTTCCBCCEETCCEEE-------
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC-------------CCcccccccccccccccceeeE-------
Confidence 344 89999987754 233489999999988652 0111 00000 0111233
Q ss_pred cCCCcEEEEe----------eCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCE-----EEEee----C
Q psy2305 74 DGFTSYFLCS----------SMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNK-----IYAGF----L 132 (334)
Q Consensus 74 s~~~~~l~~~----------~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~----d 132 (334)
..++.++++. +....|+.|.+-+.. -...+..... + .-.....++++++ +++.+ .
T Consensus 193 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 268 (711)
T 4hvt_A 193 INKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKE-Y---IYVSAGKLLSDTISSSLIFISANKDFYN 268 (711)
T ss_dssp EETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTT-S---CEEEEEESSCTTTCSSEEEEEEESSSSC
T ss_pred ECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCC-c---eEEEEEEecCCCceEEEEEEEEecccCc
Confidence 2222222221 123468888775532 2233433222 1 2234556777663 33322 2
Q ss_pred CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEe----------ecCCeEEEEECCCC-------CceE
Q psy2305 133 SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALG----------TYSKIIGLFSDSDG-------RPLF 195 (334)
Q Consensus 133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~-------~~~~ 195 (334)
..+.+.+...+....... .... .. .+..++++. +++.. ...+.|...|+.++ ....
T Consensus 269 ~~~~~~~~~~~~~~~~~l--~~~~-~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKI--NMPS-DA---TLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK 341 (711)
T ss_dssp EEEEEEECSSSSCEEEEC--CSCT-TC---EEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE
T ss_pred eeEEEEcCCCCCCcceEe--ecCC-cc---eEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccce
Confidence 456666665322332221 1111 11 123444555 44422 13677999998763 2223
Q ss_pred e-ec-cCCCCeEEEEEccCCcEEEeeecCCCe--EEEEEccCCCc-ccee-ecccccCCceEEEEecCCCceEE-eeec-
Q psy2305 196 F-LK-GHNGGITHLEFSSNGILLFSGARKDCE--IICWDLRNPGC-ILHT-FPRQVSTNQRVYFDLTSCSNYLL-SGNT- 267 (334)
Q Consensus 196 ~-~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~--i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~l~-~~~~- 267 (334)
. +. .....+..+.+..+ ..+++.. .++. +.++|+.. +. .... +... ....+..+..++++..++ +.+.
T Consensus 342 ~~~~~~~~~~l~~~~~~~~-~l~~~~~-~~~~~~l~~~~~~~-g~~~~~~~i~lp-~~~~~~~~~~~~~~~~~~~~~ss~ 417 (711)
T 4hvt_A 342 ILFTPTANEVFNFISTTKD-RVFLATY-DNVVAKVVTFTLEN-EQWTKPVVLKLP-YQNAIFGMSSYEEEEEALITIENS 417 (711)
T ss_dssp EEECCCTTEEEEEEEECSS-CEEEEEE-ETTEEEEEEECEET-TEECCCEEECCC-STTCEEEEECCTTCSCEEEEEECS
T ss_pred EEECCCCCCeEEEEEEECC-EEEEEEE-ECCEEEEEEEECCC-CceEEEeccCCC-CCeEEEEEeecCcCCEEEEEEecC
Confidence 3 32 23346778888876 4555555 5664 66677654 32 2222 2211 122344455566665443 3322
Q ss_pred --CCcEEEEeCC
Q psy2305 268 --NGDLSIWNVN 277 (334)
Q Consensus 268 --dg~i~iwd~~ 277 (334)
-+.+..+|+.
T Consensus 418 ~~P~~~~~~d~~ 429 (711)
T 4hvt_A 418 IVPPTIYLWVKT 429 (711)
T ss_dssp SSCCEEEEECTT
T ss_pred CCCCEEEEEeCC
Confidence 3678888876
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.58 E-value=11 Score=36.72 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=28.6
Q ss_pred eecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcC
Q psy2305 72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRP 105 (334)
Q Consensus 72 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 105 (334)
+..++..++++-+.|+++++|++.+++++.+...
T Consensus 244 ~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 244 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp EEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3456778999999999999999999999877543
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.93 E-value=34 Score=30.40 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=38.3
Q ss_pred eeEEEEcCCCcEEEEeeCC------------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccc
Q psy2305 4 EEDVDEAPDGTCLLTNSND------------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTS 71 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 71 (334)
.-.|+|+|.|.+++.-..+ +.+.+.+..+++.. ..+.......++.++|
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~--------------rf~~~P~gaE~TG~~f----- 538 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR--------------RFMVGPIGCEVTGISF----- 538 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE--------------EEEECCTTCEEEEEEE-----
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEE--------------EEEeCCCCccCcCeeE-----
Confidence 4568999999855543221 23555565666654 4566666778888877
Q ss_pred eecCCCcEEEEe
Q psy2305 72 SIDGFTSYFLCS 83 (334)
Q Consensus 72 ~~s~~~~~l~~~ 83 (334)
+||++.|++.
T Consensus 539 --spDg~tlfvn 548 (592)
T 3zwu_A 539 --SPDQKTLFVG 548 (592)
T ss_dssp --CTTSSEEEEE
T ss_pred --CCCCCEEEEE
Confidence 6788877664
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.58 E-value=27 Score=33.98 Aligned_cols=37 Identities=3% Similarity=-0.014 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL 197 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 197 (334)
.+.+++..++.. ++++-+.|+++++|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTT-EEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCcc-EEEEEeCCCEEEEEECCCCCeEEee
Confidence 344556667777 8999999999999999999887764
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=64.58 E-value=55 Score=26.46 Aligned_cols=149 Identities=9% Similarity=0.065 Sum_probs=80.8
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCe-------eeEEEcCccccccccceeEEEEcCCCCEEE-EeeCCcEEEEEcC--C---
Q psy2305 76 FTSYFLCSSMYAPIHLWDSVGGE-------IKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKIFSTD--R--- 142 (334)
Q Consensus 76 ~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~i~d~~--~--- 142 (334)
+..+++..+.+|.++--.+..-. ....++.. + .+..+........|+ ....|.+..+... .
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~---D---~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~ 181 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN---D---ELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRP 181 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT---C---CEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCC
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC---C---EEEEEEEecCCCEEEEEECCCeEEEEECcccccCc
Confidence 56789999999999988754311 11112211 1 344444444444444 5558888777665 2
Q ss_pred CCCeee-eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-------CceEee--ccCCCCeEEEEEccC
Q psy2305 143 PGRECV-SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-------RPLFFL--KGHNGGITHLEFSSN 212 (334)
Q Consensus 143 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~--~~~~~~i~~~~~~~~ 212 (334)
.++... ...+.+. ....|.++...+.+. .++..+..|.++.-.+..- +-+..+ ....+.+..+....+
T Consensus 182 ~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~ 259 (327)
T 3uc1_A 182 MGRATSGVQGMRFN-IDDRLLSLNVVREGT-YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDD 259 (327)
T ss_dssp CCTTSBCEESSCCC-TTCCEEEEEECCTTC-EEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECT
T ss_pred CCcCCCCeeeecCC-CCCEEEEEEEECCCC-EEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCC
Confidence 111100 0000122 234566666666666 7888999999998876432 112222 221334555544444
Q ss_pred CcEEEeeecCCCeEEEEEccC
Q psy2305 213 GILLFSGARKDCEIICWDLRN 233 (334)
Q Consensus 213 ~~~l~~~~~~d~~i~iwd~~~ 233 (334)
...++..+ .+|.+..++...
T Consensus 260 ~~~i~l~T-~~G~~ir~~~~~ 279 (327)
T 3uc1_A 260 DSELYAVT-SGGGVIRTAARQ 279 (327)
T ss_dssp TCEEEEEE-GGGCEEEEEGGG
T ss_pred CccEEEEc-CCCeEEEEehhh
Confidence 44555666 578777777653
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=59.32 E-value=69 Score=25.83 Aligned_cols=192 Identities=7% Similarity=-0.034 Sum_probs=98.0
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCC----eeeEEEcCccccccccceeEEEEcCC-CCEEEEeeCCcEEEEEc---CCCC--
Q psy2305 75 GFTSYFLCSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGFLSEVKIFST---DRPG-- 144 (334)
Q Consensus 75 ~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~d~~i~i~d~---~~~~-- 144 (334)
|+..++++.+.+|.|+--.+..- .....++... .+..+..... ...|+..+.|.+.-+.. ...+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D------~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~ 76 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTD------RLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK 76 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTC------CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCC------EEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC
Confidence 46677888899999887654311 1001111111 3334333333 34444555777555543 3211
Q ss_pred ---CeeeeecccccccccceEEE-EEcC--CCCcEEEEeecCCeEEEEECCCC--------CceEeeccCCCCeEEEEEc
Q psy2305 145 ---RECVSRNLKPWFRKNIVSAI-AINP--VHPDICALGTYSKIIGLFSDSDG--------RPLFFLKGHNGGITHLEFS 210 (334)
Q Consensus 145 ---~~~~~~~~~~~~~~~~v~~~-~~~~--~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~~ 210 (334)
.++.. .+.+. ....|.++ ...+ ++. +++..+.+|.++...+..- .....+... ..+..+...
T Consensus 77 a~G~~i~~-~i~L~-~~e~Iv~~~~~~~~~~~~-~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~ 152 (323)
T 1wp5_A 77 DLGQHIAN-IIPID-RDEEIIKAIPINDFELNG-YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLT 152 (323)
T ss_dssp SCCEEGGG-TSCCC-TTCCEEEEEEESCTTSSC-EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEE
T ss_pred CCCcChhh-ccCCC-CCCEEEEEEEecccCCCc-eEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEe
Confidence 11111 00122 22345544 3332 245 7888999999999887421 111123322 455555555
Q ss_pred cCCcEEEeeecCCCeEEEEEccCC---Cc---cceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCC
Q psy2305 211 SNGILLFSGARKDCEIICWDLRNP---GC---ILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 211 ~~~~~l~~~~~~d~~i~iwd~~~~---~~---~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 278 (334)
.....|+..+ .+|.+..+....- +. -+..+.-. ....+.++..-+++. .|+..+..|..+..++..
T Consensus 153 ~~~~~i~l~T-~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 153 DGMNELFLVT-HNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSCSEEEEEE-TTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEe-CCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 5555677777 7999888887531 10 01111111 233455554334444 677778888887776654
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.79 E-value=16 Score=33.22 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=27.0
Q ss_pred eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeee
Q psy2305 4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSV 39 (334)
Q Consensus 4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~ 39 (334)
|.++.+ +..+|++-+.|.++|+|++.+++.....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 555544 4679999999999999999999876433
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=54.29 E-value=1.4e+02 Score=27.71 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=39.0
Q ss_pred ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-------CCCCeEEEEEccCC-cEEEeee
Q psy2305 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-------HNGGITHLEFSSNG-ILLFSGA 220 (334)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~-~~l~~~~ 220 (334)
...|.+|+++|.....++.++..+.|...+ ..++.-..+.. ....+.++++.|.. ..++++.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 468999999998654777777777776655 23332222222 12469999999843 4454443
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=52.98 E-value=81 Score=24.70 Aligned_cols=148 Identities=15% Similarity=0.051 Sum_probs=79.6
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCe------eeEEEcCccccccccceeEEEEcCCCCEEE-EeeCCcEEEEEcCC---CCC
Q psy2305 76 FTSYFLCSSMYAPIHLWDSVGGE------IKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKIFSTDR---PGR 145 (334)
Q Consensus 76 ~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~i~d~~~---~~~ 145 (334)
+..+++..+.+|.++-..+..-. ....++.. + .+..+....+...++ ....|.+..+.... .++
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg---D---~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR 152 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG---D---EVVSIASSVDETHILLFTKKGRVARFSVREVPPSTP 152 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT---C---CEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC---C---EEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCC
Confidence 45688889999999988764321 11112211 1 455555554444555 44588888777542 111
Q ss_pred eee-eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-------CCceEeeccCCCCeEEEEEccCCcEEE
Q psy2305 146 ECV-SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-------GRPLFFLKGHNGGITHLEFSSNGILLF 217 (334)
Q Consensus 146 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~ 217 (334)
.-. ...+.+.. ...|..+...+++. .++..+..|.++...+.. ++-+..+ ...+.+..+....+...++
T Consensus 153 ~a~Gv~~i~L~~-~d~vv~~~~~~~~~-~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~ 229 (276)
T 3no0_A 153 GARGVQGIKLEK-NDETSGLRIWNGEP-YLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELL 229 (276)
T ss_dssp TCCCEECCCCCT-TCCEEEEEEESSCS-EEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEE
T ss_pred CCCCEEEEccCC-CCEEEEEEEeCCCC-EEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEE
Confidence 000 00002222 24565655555565 788888999998887632 2223333 2334455444333334566
Q ss_pred eeecCCCeEEE--EEccC
Q psy2305 218 SGARKDCEIIC--WDLRN 233 (334)
Q Consensus 218 ~~~~~d~~i~i--wd~~~ 233 (334)
..+ .+|.+.. ++...
T Consensus 230 ~~t-~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 230 ITT-KNGKAFYDKINQKD 246 (276)
T ss_dssp EEE-TTSCEEEEEEEGGG
T ss_pred EEc-CCCeEEEeeeCHHH
Confidence 666 6777777 77653
No 373
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=43.69 E-value=1.9e+02 Score=26.40 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=90.3
Q ss_pred eEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccc--cccceeEEEEcCCC-CEEEEee-C---
Q psy2305 60 IIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVD--EVTHAYSLAFSLDG-NKIYAGF-L--- 132 (334)
Q Consensus 60 ~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~-d--- 132 (334)
.|..+.++|. +...+.++...+.|...+= .|+.-..+....... ....|.+++++|.. ..++++. .
T Consensus 24 ~i~~i~~~p~------~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~ 96 (737)
T 2cn3_A 24 FMPGIVFNET------EKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTN 96 (737)
T ss_dssp CCCEEEECSS------STTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSS
T ss_pred eeeEEEECCC------CCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccc
Confidence 5666666442 2244555665566666552 333322232211100 01268999999843 3444332 1
Q ss_pred ----CcEEEEEcCCCCCeeeeeccccc--c---cccceEEEEEcCCCCcEEEEeecCCeEEEEEC-CCCCceEeec---c
Q psy2305 133 ----SEVKIFSTDRPGRECVSRNLKPW--F---RKNIVSAIAINPVHPDICALGTYSKIIGLFSD-SDGRPLFFLK---G 199 (334)
Q Consensus 133 ----~~i~i~d~~~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~---~ 199 (334)
+...||.-...++.-........ . ....+..++++|.....++.+...|. -+|-. ..++.-..+. .
T Consensus 97 ~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~~~~~ 175 (737)
T 2cn3_A 97 DWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVESFPN 175 (737)
T ss_dssp SSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECTTCCC
T ss_pred ccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecccCCCC
Confidence 13556665554554433211111 0 01134678999876446666653321 23322 2222211111 1
Q ss_pred --------------CCCCeEEEEEccCC-------cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCC
Q psy2305 200 --------------HNGGITHLEFSSNG-------ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC 258 (334)
Q Consensus 200 --------------~~~~i~~~~~~~~~-------~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (334)
....+..+.++|.. ..++++. .++.-.+|.-...++.-..+...........+.++|+
T Consensus 176 ~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~-~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~ 254 (737)
T 2cn3_A 176 PGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGV-ADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASN 254 (737)
T ss_dssp CCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEE-SCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTT
T ss_pred CcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEe-cCCCccEEEEcCCCCceEECCCCCCcccceEEEECCC
Confidence 12347778888743 2566655 4543335555543443333332111112233557777
Q ss_pred CceEEee
Q psy2305 259 SNYLLSG 265 (334)
Q Consensus 259 ~~~l~~~ 265 (334)
+.++++.
T Consensus 255 ~~l~~~~ 261 (737)
T 2cn3_A 255 GMLYITY 261 (737)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 7666554
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.60 E-value=1.4e+02 Score=23.97 Aligned_cols=149 Identities=9% Similarity=-0.058 Sum_probs=77.7
Q ss_pred CCEEEEee-CCcEEEEEcCCC---C--CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC------
Q psy2305 124 GNKIYAGF-LSEVKIFSTDRP---G--RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG------ 191 (334)
Q Consensus 124 ~~~l~~~~-d~~i~i~d~~~~---~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------ 191 (334)
+.+++..+ .|.++...+..- . +-... +.+... +.+..+....... .++..+.+|.+..+....-
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~a--i~l~e~-d~lv~~~~~~~~~-~i~l~T~~G~~irf~~~ev~~~gR~ 181 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTG--INLKND-DQVVDVHLTDGMN-ELFLVTHNGYALWFDESEVSIVGVR 181 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEEC--SCCCTT-CCEEEEEEECSCS-EEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEE--EEeCCC-CEEEEEEEeCCCC-EEEEEeCCCcEEEEEHHHCcccCCC
Confidence 45566555 899998877521 1 11111 122322 4555555544445 6777888999988876431
Q ss_pred -CceE--eeccCCCCeEEEEEccCCc-EEEeeecCCCeEEEEEccCC------Cccceeeccc-ccCCceEEEEecCCCc
Q psy2305 192 -RPLF--FLKGHNGGITHLEFSSNGI-LLFSGARKDCEIICWDLRNP------GCILHTFPRQ-VSTNQRVYFDLTSCSN 260 (334)
Q Consensus 192 -~~~~--~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~~~~------~~~~~~~~~~-~~~~~~~~~~~s~~~~ 260 (334)
+-++ .+. ....|.++..-+++. .|++.+ ..|..+..++... ++-+..+... ..+..+..+....++.
T Consensus 182 a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt-~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~ 259 (323)
T 1wp5_A 182 AAGVKGMNLK-EGDYIVSGQLITSKDESIVVAT-QRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSD 259 (323)
T ss_dssp CCCEECCCCC-TTCCEEEEEEECCTTCEEEEEE-TTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTC
T ss_pred CcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEE-CCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCC
Confidence 1111 222 234566665444444 677788 7999888887641 1111111101 1122344322223344
Q ss_pred eEEeeecCCcEEEEeCCC
Q psy2305 261 YLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 261 ~l~~~~~dg~i~iwd~~~ 278 (334)
.++..+.+|.+....+..
T Consensus 260 ~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 260 TIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEEETTSCEEEEEGGG
T ss_pred eEEEEeCCCeEEEEEhhh
Confidence 555666777776666654
No 375
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=38.45 E-value=1.1e+02 Score=26.54 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=41.7
Q ss_pred ceEEEEEcCC----CC-cEEEEeecCCeEEEEECC-CCC-------ceEeec--cCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305 160 IVSAIAINPV----HP-DICALGTYSKIIGLFSDS-DGR-------PLFFLK--GHNGGITHLEFSSNGILLFSGARKDC 224 (334)
Q Consensus 160 ~v~~~~~~~~----~~-~~l~~~~~dg~i~i~d~~-~~~-------~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~ 224 (334)
..+.|+...- +. ..+..|+.+|.|.-.-+. .+. .+..+. ....+|..|.++++..+|++++ .++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s-~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGS-TAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEB-SSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEE-CCe
Confidence 3466665432 32 356778899987644432 211 222332 2357899999999999999998 566
Q ss_pred eEEE
Q psy2305 225 EIIC 228 (334)
Q Consensus 225 ~i~i 228 (334)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=38.12 E-value=1.7e+02 Score=24.13 Aligned_cols=149 Identities=8% Similarity=-0.050 Sum_probs=79.5
Q ss_pred cCCCcEEEEeeCCCcEEEEeCCC---------CeeeEEEcCccccccccceeEEEEcCCCCEEE-EeeCCcEEEEE---c
Q psy2305 74 DGFTSYFLCSSMYAPIHLWDSVG---------GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKIFS---T 140 (334)
Q Consensus 74 s~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~i~d---~ 140 (334)
-|+..++++.+.+|.|+--.+.+ |.....++... .+..+........|+ ..+.|.+.-+. +
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D------~l~~~~~~~t~d~ll~fT~~G~~~~~~~~ei 77 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEED------FIDQLWLVNTHDTLLTFTSSGKVFWLPVHQL 77 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCC------CEEEEEEECTTCEEEEEETTSEEEEEEGGGS
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCC------EEEEEEEecCCCEEEEEeCCCeEEEEEHHHC
Confidence 35777899999999998764321 12222233211 444444444444444 55567665554 3
Q ss_pred CCCCC-----eeeeecccccccccceEEEEEcC---CCCcEEEEeecCCeEEEEECCCC-------CceEeeccCCCCeE
Q psy2305 141 DRPGR-----ECVSRNLKPWFRKNIVSAIAINP---VHPDICALGTYSKIIGLFSDSDG-------RPLFFLKGHNGGIT 205 (334)
Q Consensus 141 ~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~ 205 (334)
...++ .+.. .+.+. ....|.++..-. ++. +|+.++..|.++...+... .....+.. ...+.
T Consensus 78 p~~~r~a~G~~i~~-ll~L~-~~e~Iv~~~~~~~~~~~~-~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv 153 (370)
T 3l6v_A 78 PEAGSNARGRPIIN-WIPLE-SGERVQAVLPVREYADNR-YVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALV 153 (370)
T ss_dssp CBCCTTSCCEEGGG-SCCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEE
T ss_pred cCCCcccCCcCHhh-ccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEE
Confidence 32111 1110 00122 234455544332 344 8888999999999886432 11222332 34455
Q ss_pred EEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305 206 HLEFSSNGILLFSGARKDCEIICWDLRN 233 (334)
Q Consensus 206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~ 233 (334)
.+........|+..+ ..|.+..+....
T Consensus 154 ~v~~~~~~~~i~l~T-~~G~~irf~~~~ 180 (370)
T 3l6v_A 154 GVALTDGDRDVLLFA-SNGKTVRFGEST 180 (370)
T ss_dssp EEEEECSCCEEEEEE-TTSEEEEEEGGG
T ss_pred EEEEeCCCceEEEEe-CCCeEEEEEccc
Confidence 555544555677777 788888887653
No 377
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=36.66 E-value=1.6e+02 Score=23.46 Aligned_cols=194 Identities=11% Similarity=0.011 Sum_probs=102.1
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCee-------eEEEcCccccccccceeEEEEcCCCCEE-EEeeCCcEEEEEcC---CC
Q psy2305 75 GFTSYFLCSSMYAPIHLWDSVGGEI-------KATYRPYNQVDEVTHAYSLAFSLDGNKI-YAGFLSEVKIFSTD---RP 143 (334)
Q Consensus 75 ~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~i~d~~---~~ 143 (334)
++..++++.+.+|.|+--.+..-+. ...+... ..+ .+..+........+ +....|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D---~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGD---EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDS 81 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTC---CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCC---EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCC
Confidence 4667788899999998776532211 1111111 111 34444444343444 44557776666543 11
Q ss_pred -----CCeeeeecccccccccceEEEEEcC---CCCcEEEEeecCCeEEEEECCC-------CCceEeeccCCCCeEEEE
Q psy2305 144 -----GRECVSRNLKPWFRKNIVSAIAINP---VHPDICALGTYSKIIGLFSDSD-------GRPLFFLKGHNGGITHLE 208 (334)
Q Consensus 144 -----~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~ 208 (334)
+..+.. .+.+.. ...|..+...+ +.. .++..+..|.++...+.. +.....+.. ...+..+.
T Consensus 82 ~r~~~G~~i~~-~l~l~~-~e~i~~~~~~~~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 82 SRASKGQNISE-LINLGD-QEEILTIKNSKDLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp ------CBGGG-TSCCCT-TCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEE
T ss_pred CccCCCcChhh-ccCCCC-CCEEEEEEEeccCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE
Confidence 111100 001222 23444443332 344 788889999999888743 222223343 45566665
Q ss_pred EccCCcEEEeeecCCCeEEEEEccCC---Cc---cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 209 FSSNGILLFSGARKDCEIICWDLRNP---GC---ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 209 ~~~~~~~l~~~~~~d~~i~iwd~~~~---~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
.......++..+ .+|.+..+....- +. -+..+.-. ....+..+..-.++..+++.+..|..+..++..
T Consensus 158 ~~~~~~~i~l~T-~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 158 IVFKDEKVICLS-KKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EECTTCEEEEEE-TTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EeCCCCEEEEEe-CCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 555455677778 7999999887641 00 01111111 234455554444566777888899998888754
No 378
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=33.30 E-value=1.7e+02 Score=22.79 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=87.8
Q ss_pred CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEE
Q psy2305 86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIA 165 (334)
Q Consensus 86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (334)
||.|..|-......+. +.. .. ...|..++.......+ . .||.|..|-....++.-.. ..-...|..++
T Consensus 41 ~G~v~~wG~n~~Gqlg-~p~-~~---~~~i~~ia~G~~hs~~-l-~~G~v~~wG~n~~Gqlg~P-----~~~~~~v~~ia 108 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLT-MPA-AT---QSGVDAIAAGNYHSLA-L-KDGEVIAWGGNEDGQTTVP-----AEARSGVDAIA 108 (282)
T ss_dssp TTEEEEEECCSSSTTS-CCG-GG---GSCCCEEEECSSEEEE-E-ETTEEEEEECCTTSTTCCC-----GGGSSSEEEEE
T ss_pred CCEEEEEeCCCCCCCC-CCc-cC---CCCEEEEEeCCCEEEE-E-ECCEEEEeeCCCCCCCCCC-----cccCCCeEEEE
Confidence 8888888654321111 010 01 1156666665443333 3 3889999987754443221 11134677777
Q ss_pred EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305 166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245 (334)
Q Consensus 166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 245 (334)
..... .+.-. +|.|+.|-......+..-......|..++...+ ..+.-. ||.++.|-....++.-. ...
T Consensus 109 ~G~~h---s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~--~G~v~~wG~n~~gqlg~--p~~- 177 (282)
T 3qhy_B 109 AGAWA---SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK--NGGVIAWGDNYFGQTTV--PAE- 177 (282)
T ss_dssp EETTE---EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE--TTEEEEEECCTTSTTSC--CGG-
T ss_pred CcCCE---EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE--CCEEEEecCCCCCCCCC--cee-
Confidence 76553 33334 999999986543222111112345766665433 222233 68899998775444321 111
Q ss_pred cCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS 279 (334)
Q Consensus 246 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 279 (334)
....+..++...+ ..++. .||.|+.|=....
T Consensus 178 ~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 178 AQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp GGSSEEEEEECSS-EEEEE--ETTEEEEEECCTT
T ss_pred cCCCeEEEEecCC-EEEEE--ECCeEEEEECCCC
Confidence 1234666654333 33333 5999999976543
No 379
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=30.78 E-value=2.8e+02 Score=24.52 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCC--cEEEeeecCCC----eEEEEEcc
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNG--ILLFSGARKDC----EIICWDLR 232 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~l~~~~~~d~----~i~iwd~~ 232 (334)
.+.-..+.-||+.-|+.|+. ++| .+++.+... .+|...+.-..|.|+. ..++.+. +++ -..+.|.+
T Consensus 327 ~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~-E~~~~~~G~~~~dA~ 399 (591)
T 2zux_A 327 NLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVH-EDKNAKYGLSFRDAA 399 (591)
T ss_dssp CCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEEC-CCTTSSCSEEEEETT
T ss_pred CCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEe-cCCCCCCccEEEECC
Confidence 34445556666656665542 233 234444333 3677777777788863 4566655 441 34457777
Q ss_pred CCCccceeecccccCCceEEEEecCC
Q psy2305 233 NPGCILHTFPRQVSTNQRVYFDLTSC 258 (334)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (334)
+ ++.+................|.|+
T Consensus 400 t-G~vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 400 T-GKILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp T-CCEEEEECCSSCCCCEEEECCCTT
T ss_pred C-CcEEEEcCCCCCCCceeEEecCCC
Confidence 6 676666554333344444555555
No 380
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.77 E-value=1.1e+02 Score=19.87 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=16.3
Q ss_pred eEEEEcCCCCEEEEeeCCcEEEEEcCC
Q psy2305 116 YSLAFSLDGNKIYAGFLSEVKIFSTDR 142 (334)
Q Consensus 116 ~~~~~~~~~~~l~~~~d~~i~i~d~~~ 142 (334)
..+.+..+|++++...++.+ +|.-.+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 45777788877776544443 676553
No 381
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=30.36 E-value=2.1e+02 Score=24.80 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=34.0
Q ss_pred EEEEeeCCCcEEEEeCC-CC-------eeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEE
Q psy2305 79 YFLCSSMYAPIHLWDSV-GG-------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVK 136 (334)
Q Consensus 79 ~l~~~~~d~~i~iwd~~-~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~ 136 (334)
.++.|..+|.|.-.-+. .+ ..+..++.... ..+|..|.++++..+|+++++..|.
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~---~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFRE---PTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSS---CCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCC---CCccceEEEcCCCCEEEEEECCeEE
Confidence 47778889987544332 21 12334443211 1288999999999999988855443
No 382
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=29.98 E-value=2.1e+02 Score=22.77 Aligned_cols=203 Identities=10% Similarity=0.010 Sum_probs=100.4
Q ss_pred cCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcE
Q psy2305 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPI 89 (334)
Q Consensus 10 sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i 89 (334)
-|+..++++.+.+|.|+--.+........ ... -...+....+..+..+... + ..+.++..+..|.+
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~------~~~-g~~~~~lke~D~l~~~~~~------~-~~~~ll~~T~~G~~ 70 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGT------GGK-GLSSFDLNDGDEIVIALCV------N-THDYLFMISNEGKL 70 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCS------SCC-CEECCCCCTTCCEEEEEEE------E-TTCEEEEEETTSEE
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhcccc------CCC-CceecccCCCCEEEEEEEE------C-CCCEEEEEECCCeE
Confidence 35677899999999999887654432100 000 0001111122333332221 2 33456666677776
Q ss_pred EEEeCC---CCeeeEE-E---cCccccccccceeEEEEcC---CCCEEEEe-eCCcEEEEEcCCCC----Ceeeeecccc
Q psy2305 90 HLWDSV---GGEIKAT-Y---RPYNQVDEVTHAYSLAFSL---DGNKIYAG-FLSEVKIFSTDRPG----RECVSRNLKP 154 (334)
Q Consensus 90 ~iwd~~---~~~~~~~-~---~~~~~~~~~~~v~~~~~~~---~~~~l~~~-~d~~i~i~d~~~~~----~~~~~~~~~~ 154 (334)
+-.... ....... . .... ......|..+...+ +..+|+.. ..|.++...+..-. .-... +.+
T Consensus 71 ~~~~~~~ip~~~r~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~--i~L 147 (312)
T 1suu_A 71 YLINAYEIKDSSRASKGQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIV--IKL 147 (312)
T ss_dssp EEEEGGGSCC-------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEEC--BCC
T ss_pred EEEEHHHCCCCCccCCCcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEE--Eec
Confidence 655432 2111000 0 0000 00011344443332 34555544 48998888775310 11111 123
Q ss_pred cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC---------CceEeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305 155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG---------RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE 225 (334)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 225 (334)
.. ...+..+.....+. .++..+.+|.+..+....- .....+. ....|.++..-+++..|++.+ ..|.
T Consensus 148 ~~-~d~lv~~~~~~~~~-~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt-~~G~ 223 (312)
T 1suu_A 148 ND-KDFVTSAEIVFKDE-KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVS-ENGY 223 (312)
T ss_dssp CT-TCCEEEEEEECTTC-EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEE-TTSE
T ss_pred CC-CCEEEEEEEeCCCC-EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEE-CCCc
Confidence 33 44555555554455 6778889999999987431 1122233 234566665555566777888 7999
Q ss_pred EEEEEccC
Q psy2305 226 IICWDLRN 233 (334)
Q Consensus 226 i~iwd~~~ 233 (334)
.+..++..
T Consensus 224 ~kr~~~~e 231 (312)
T 1suu_A 224 GKRLNMSK 231 (312)
T ss_dssp EEEEEGGG
T ss_pred eEEEEHHH
Confidence 99998864
No 383
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=29.70 E-value=1.2e+02 Score=26.56 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=40.8
Q ss_pred ceEEEEEcCCCC-cEEEEeecCCeEEEEECCCCC----ceEee--ccCCCCeE-EEEEccCCcEEEeeecCCCeEE
Q psy2305 160 IVSAIAINPVHP-DICALGTYSKIIGLFSDSDGR----PLFFL--KGHNGGIT-HLEFSSNGILLFSGARKDCEII 227 (334)
Q Consensus 160 ~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~--~~~~~~i~-~~~~~~~~~~l~~~~~~d~~i~ 227 (334)
..+.|+....+. ..+..|+.+|.|.-..+.... .+..+ .....+|. .|.+++++.+|++++ ..+.++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s-~~~V~k 475 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMS-ERQVTR 475 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEEC-SSEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEe-ccccce
Confidence 355555554333 367778999987766554321 12222 22245775 899999999999998 444333
No 384
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=29.36 E-value=1.6e+02 Score=26.15 Aligned_cols=55 Identities=9% Similarity=0.075 Sum_probs=35.5
Q ss_pred EEEEeecCCeEEEEECCCCC----c--eEeec--cCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305 173 ICALGTYSKIIGLFSDSDGR----P--LFFLK--GHNGGITHLEFSSNGILLFSGARKDCEIIC 228 (334)
Q Consensus 173 ~l~~~~~dg~i~i~d~~~~~----~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 228 (334)
.+..|+.+|.|.-.-..... . +..+. ....+|..|.++++...|++++ .++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s-~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSS-QWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEEC-SSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEe-cceEEEc
Confidence 67778889987644432211 1 12222 2456889999999999999988 5554444
No 385
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=29.01 E-value=2.4e+02 Score=23.14 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=77.1
Q ss_pred eeEEEEcCCCCEEE-EeeCCcEEEEEcCCCCCe------eeeecccccc-cccceEEEEEcCCCCcEEEEeecCCeEEEE
Q psy2305 115 AYSLAFSLDGNKIY-AGFLSEVKIFSTDRPGRE------CVSRNLKPWF-RKNIVSAIAINPVHPDICALGTYSKIIGLF 186 (334)
Q Consensus 115 v~~~~~~~~~~~l~-~~~d~~i~i~d~~~~~~~------~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 186 (334)
+..++++.-..+.+ ...+|.|..|-....++. ....+..... ....|..++.... ..+.-..+|.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~---hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA---HSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS---EEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC---eEEEEeCCCeEEEe
Confidence 44556655444444 344889999865431111 0111101111 1225666665433 45555678999999
Q ss_pred ECCC-CC-------c---eEeecc-CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc----------ceeeccc
Q psy2305 187 SDSD-GR-------P---LFFLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI----------LHTFPRQ 244 (334)
Q Consensus 187 d~~~-~~-------~---~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~----------~~~~~~~ 244 (334)
-... ++ . ...+.. ....|..++........+... .++.++.|-....+++ ...+. .
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~-~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~-~ 261 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT-DDDTVWSWGDGDYGKLGRGGSDGCKVPMKID-S 261 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE-TTTEEEEEECCGGGTTSSSSCCCEEEEEECG-G
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc-cCCEEEEEeCCCCCCCCCCCCCCccccEEec-c
Confidence 7532 11 0 011111 223566666544334555556 7999999976542221 00111 1
Q ss_pred ccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305 245 VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278 (334)
Q Consensus 245 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 278 (334)
.....+..++.. ..+.+.-..+|.|+.|=...
T Consensus 262 ~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 262 LTGLGVVKVECG--SQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp GTTSCEEEEEEE--TTEEEEEETTSCEEEEECCG
T ss_pred cCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCC
Confidence 112234455433 23334446789999996543
No 386
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=26.48 E-value=3.9e+02 Score=24.70 Aligned_cols=155 Identities=16% Similarity=0.208 Sum_probs=74.2
Q ss_pred ceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccc--cccceeEEEEcCCC-CEEEEee-CC
Q psy2305 58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVD--EVTHAYSLAFSLDG-NKIYAGF-LS 133 (334)
Q Consensus 58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~-d~ 133 (334)
...|.++.+.|. +...+.++...+.|...+ ..|+.-..+....... ....+.++++.|.. ..++++. +.
T Consensus 14 ~g~i~~i~~~p~------~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~ 86 (789)
T 1sqj_A 14 GGYITGIVAHPK------TKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY 86 (789)
T ss_dssp CSCEEEEEECSS------STTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC
T ss_pred CCcEEEEEECCC------CCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCcc
Confidence 357878777552 234566666666665554 3343322222211000 11268999999853 3444432 32
Q ss_pred c----EEEEEcCCCCCeeeeeccccc--c---cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec------
Q psy2305 134 E----VKIFSTDRPGRECVSRNLKPW--F---RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK------ 198 (334)
Q Consensus 134 ~----i~i~d~~~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------ 198 (334)
. -.||--...++.-........ . ....+..++++|.....++.+...+.|.. ....++.-..+.
T Consensus 87 ~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~ 165 (789)
T 1sqj_A 87 VGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAF 165 (789)
T ss_dssp TTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCC
T ss_pred CCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCcccc
Confidence 2 445544443554433211110 0 11135678888865435666654443322 222233222221
Q ss_pred cCCCCeEEEEEccC-CcEEEeee
Q psy2305 199 GHNGGITHLEFSSN-GILLFSGA 220 (334)
Q Consensus 199 ~~~~~i~~~~~~~~-~~~l~~~~ 220 (334)
.....+..+.++|. +..++++.
T Consensus 166 ~~~~~~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 166 TNGIGYTSVIFDPERNGTIYASA 188 (789)
T ss_dssp STTTCEEEEEECTTSTTCEEEEE
T ss_pred CCCCCeEEEEECCCCCCEEEEEE
Confidence 11245788999884 44666665
No 387
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=26.17 E-value=3.8e+02 Score=24.47 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------CCCeEEEEEccC-CcEEEeeecCC-------C
Q psy2305 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------NGGITHLEFSSN-GILLFSGARKD-------C 224 (334)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~-~~~l~~~~~~d-------~ 224 (334)
.|..|+++|.....++.+...+.|...+ ..++.-..+..+ ...|.+++++|. ...++++. .. +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~-~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA-GMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE-CSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe-cccccccccC
Confidence 7899999998654677777667766665 233332222211 245899999983 34444443 21 1
Q ss_pred eEEEEEccCCCccceeeccccc-------CCceEEEEecCCC-ceEEeee
Q psy2305 225 EIICWDLRNPGCILHTFPRQVS-------TNQRVYFDLTSCS-NYLLSGN 266 (334)
Q Consensus 225 ~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~-~~l~~~~ 266 (334)
...||.....++.-..+..... ...+..++++|.. ..|+.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 3566666554443333221100 0112457777753 5555554
No 388
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=25.67 E-value=1.7e+02 Score=26.42 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=34.9
Q ss_pred EEEEeecCCeEEE-EECCCCC-------ceEee--ccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305 173 ICALGTYSKIIGL-FSDSDGR-------PLFFL--KGHNGGITHLEFSSNGILLFSGARKDCEIIC 228 (334)
Q Consensus 173 ~l~~~~~dg~i~i-~d~~~~~-------~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 228 (334)
.+..|+.+|.|.- .-..... .+..+ .....+|..|.++++..+|++++ .++.+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t-~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGS-TAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEB-SSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEE-CCEEEEE
Confidence 5677889998753 2222111 11111 23566889999999999999998 6665444
No 389
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=22.34 E-value=2.6e+02 Score=25.30 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=33.7
Q ss_pred EEEeeecCCCeEE-EEEccCCCccceeecccccCCceEEEEecCCC--ceEEeeecCCcEEE
Q psy2305 215 LLFSGARKDCEII-CWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS--NYLLSGNTNGDLSI 273 (334)
Q Consensus 215 ~l~~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~~~~dg~i~i 273 (334)
.++.|+ .+|.|. +.........+..+..-.....+..+.++++. .+|++++.++.++|
T Consensus 417 V~flGT-~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVST-DRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEE-TTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEc-CCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 566777 788874 33443311222222222224456678889887 88888877765444
No 390
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.06 E-value=3.8e+02 Score=23.84 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=36.2
Q ss_pred cEEEEeeCCCcEEEEeCCC-C-----eeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEc
Q psy2305 78 SYFLCSSMYAPIHLWDSVG-G-----EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFST 140 (334)
Q Consensus 78 ~~l~~~~~d~~i~iwd~~~-~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~ 140 (334)
..++.|+.+|.|.-.-+.. + -.+..++.... ..+|..|.++++...|+++++..|.-..+
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~---~~pi~~L~ls~~~~~LyV~s~~~V~qVPl 446 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRR---AAAIQTMSLDAERRKLYVSSQWEVSQVPL 446 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSS---CCCCCEEEEETTTTEEEEECSSEEEEEET
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCC---CCceeeEEEcCCCCEEEEEecceEEEcch
Confidence 3577888899876443322 2 11233332111 12789999999999999888554444444
No 391
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=20.27 E-value=3.2e+02 Score=24.75 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=34.3
Q ss_pred EEEeeecCCCeEE-EEEccCCC-c-----cceeecccccCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305 215 LLFSGARKDCEII-CWDLRNPG-C-----ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI 273 (334)
Q Consensus 215 ~l~~~~~~d~~i~-iwd~~~~~-~-----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 273 (334)
.++.|+ .+|.|. +.-..... . .+.++........+..+.+++++.+|++++.++.++|
T Consensus 431 VlFLGT-~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGT-DVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEE-TTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEC-CCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 466777 788874 43322211 0 1222222223556778889999999999988775554
Done!