RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2305
(334 letters)
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 67.9 bits (166), Expect = 8e-13
Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 21/208 (10%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I +W+ + Y D + + + + S+ + + + +
Sbjct: 88 IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS--SKDGQIIVLKVNHYQQ 145
Query: 146 ECVSRNLKPWFRK-----------NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL 194
E + L + V A + T + +F L
Sbjct: 146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL 205
Query: 195 FFLKG--HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY 252
++ +G ++ + +L G I WD+R I + V
Sbjct: 206 QIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIRFNVLIRSWSFGDHAPITHVE 264
Query: 253 FDLTSCSN--YLLSGNTNGDLSIWNVNT 278
N ++ G++ L+IWN
Sbjct: 265 VCQFYGKNSVIVVGGSSKTFLTIWNFVK 292
Score = 50.2 bits (120), Expect = 4e-07
Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 45/232 (19%)
Query: 89 IHLWDSVGGEIKAT--------YRPYNQVDEVTHAY---SLAFSLDGNKI--YAGFLSEV 135
I + + ++ R N + + Y AF + + LS V
Sbjct: 135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRV 194
Query: 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF 195
IF R + ++ R VS+I I+ + LGT II ++ +
Sbjct: 195 IIFDI-RTLER--LQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIR 250
Query: 196 FLK-GHNGGITHLE---FSSNGILLFSGARKDCEIICWDLRNPGCILHTF------PRQV 245
G + ITH+E F ++ G + W+ G + F P
Sbjct: 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSME 309
Query: 246 S-----------------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
+ + S LL+ + ++++N +
Sbjct: 310 HFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS 361
Score = 42.5 bits (100), Expect = 1e-04
Identities = 22/232 (9%), Positives = 55/232 (23%), Gaps = 47/232 (20%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
+ L+ + + +D+ L + + I +V +
Sbjct: 224 EECCVLILGTTRGIIDIWDIRFN--------------VLIRSWSFGDHAPIT-HVEVCQF 268
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
+ + S + +W+ V G + + + ++ + F +
Sbjct: 269 YGKNSV--IVVGGSSKTFLTIWNFVKGHCQYAFINSD--EQPS---MEHFLPIEKGLEEL 321
Query: 131 FLSEV--------------KIFSTDRPGRECVSRNLKPWFRKNIVSA-----IAINPVHP 171
+ KI TD V +L V + P
Sbjct: 322 NFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQV 381
Query: 172 DICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS--NGILLFSGAR 221
+ ++ + + H+ I + LL +
Sbjct: 382 T----ANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN 429
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 65.9 bits (161), Expect = 3e-12
Identities = 51/323 (15%), Positives = 113/323 (34%), Gaps = 38/323 (11%)
Query: 20 SNDNHLRTFDLPSELHCKSVWRPSNQ-RPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS 78
+ FD + K + K+ +KI G + + P+ + +
Sbjct: 89 QLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACV----- 143
Query: 79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTH-----AYSLAFSLDGNKIYAGFLS 133
+ + + ++D K Q D Y L+++ + N LS
Sbjct: 144 -IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY---LLS 199
Query: 134 -----EVKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLF 186
+ ++ + +E + K F +V +A + +H + + + ++
Sbjct: 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259
Query: 187 ---SDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCILHTFP 242
+++ +P + H + L F+ +L +G+ D + WDLRN LH+F
Sbjct: 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSFE 318
Query: 243 ---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP--YEESVQEPLYKF 297
++ +V + + L S T+ L +W+++ S E+ E L+
Sbjct: 319 SHKDEIF---QVQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374
Query: 298 SAHQDCTNGVRWKHHKFERDLLV 320
H + W + E ++
Sbjct: 375 GGHTAKISDFSW--NPNEPWIIC 395
Score = 55.9 bits (135), Expect = 5e-09
Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 41/231 (17%)
Query: 116 YSLAFSLDGNKIYAGF--LSEVKIFS-TDRPGRECVSRNLKPWFR----KNIVSAIAINP 168
+ + A S+V +F T P + S +P R + ++ NP
Sbjct: 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP 191
Query: 169 VHPDICALGTYSKII-------GLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR 221
+ I GH + + + LF
Sbjct: 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251
Query: 222 KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS------NYLLSGNTNGDLSIWN 275
D +++ WD RN + T ++ S L +G+ + +++W+
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTA-----EVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 276 VNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS 326
+ ++ L+ F +H+D V+W +L A+
Sbjct: 307 LRN-----------LKLKLHSFESHKDEIFQVQW--SPHNETIL---ASSG 341
Score = 44.3 bits (105), Expect = 3e-05
Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 29/162 (17%)
Query: 180 SKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
G F G+ +K H G + + + + +++ +D
Sbjct: 106 KGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTK----- 160
Query: 239 HTFPRQVSTNQRVYFDLTSCSN-------------YLLSGNTNGDLSIWNVNTSNLPSSP 285
H + S + L YLLS + + + +W++N +P
Sbjct: 161 HPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA-----TP 215
Query: 286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG 327
E V + F+ H V W H L + +
Sbjct: 216 KEHRVIDAKNIFTGHTAVVEDVAW--HLLHESLF---GSVAD 252
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 65.6 bits (159), Expect = 4e-12
Identities = 55/383 (14%), Positives = 106/383 (27%), Gaps = 82/383 (21%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSE-------LHCKSVWRPSNQRPKLNYTLKIKEG-GIIY 62
G L T + F E +V+ LK E I
Sbjct: 38 HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN 97
Query: 63 DYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKAT-------------------- 102
W P+ ++ + FL S+ I LW + +
Sbjct: 98 KIRWLPQKNA-----AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL 152
Query: 103 YRPYNQVDEVT---------------HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGREC 147
P + ++ H S++ + D + + ++ + R
Sbjct: 153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSF 212
Query: 148 VSRNLKPWF---RKNIVSAIAINPVHPDICALGTYSKIIGLF----------------SD 188
++KP +++A +P + + I L
Sbjct: 213 NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP 272
Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ---V 245
D F I+ ++FS +G + + R + WDL + T+
Sbjct: 273 EDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDYLSVKVWDLNMENRPVETYQVHEYLR 330
Query: 246 STNQRVY-----FDLTSC-----SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295
S +Y FD C + +++G+ N +++ NT + +P
Sbjct: 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRT 390
Query: 296 KFSAHQDCTNGVRWKHHKFERDL 318
+ C +G R K L
Sbjct: 391 VLKPRKVCASGKRKKDEISVDSL 413
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 65.6 bits (160), Expect = 6e-12
Identities = 40/294 (13%), Positives = 85/294 (28%), Gaps = 49/294 (16%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
D + + T S D ++ +W + + +T + +
Sbjct: 667 SDDSYIATCSADKKVK------------IWDSATGKLV--HTYDEHSEQV-NCCHFTN-- 709
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
S + LWD E + T + + V FS D + +
Sbjct: 710 ---KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT--NSVN---HCRFSPDDELLASC 761
Query: 131 FLSE---VKIFSTD--------RPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALG 177
S ++++ R +S P + IV + D +
Sbjct: 762 --SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW---SADGDKIIVA 816
Query: 178 TYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
+K++ LF L GH+ I + +FS L + W++ +
Sbjct: 817 AKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDS-RL 873
Query: 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV 290
+ +S V F + + L+ + + + +W S+ +
Sbjct: 874 KVADCRGHLSWVHGVMF--SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925
Score = 64.5 bits (157), Expect = 2e-11
Identities = 43/307 (14%), Positives = 89/307 (28%), Gaps = 71/307 (23%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
P + + + +W ++ G ++ ++ P
Sbjct: 850 PYDHLAVIALSQYCVE------------LWNIDSRLKV--ADC---RGHLSWVHGVMFSP 892
Query: 69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
DG S FL +S I +W++ + + F + +
Sbjct: 893 -----DG--SSFLTASDDQTIRVWETKKVCKNSAIVLK-------QEIDVVFQENETMVL 938
Query: 129 AGFLSE---VKIFSTDRPGRECVSRNLKPWFR-KNIVSAIAINPVHPD--ICALGTYSKI 182
A +++ + + + + + VS + P A G
Sbjct: 939 AV--DNIRGLQLIAG---------KTGQIDYLPEAQVSCCCL---SPHLEYVAFGDEDGA 984
Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
I + + R GH + H++F+++G L S + D I W+ + +
Sbjct: 985 IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYV--FLQ 1041
Query: 243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
T + + LLS + +G + +WNV T F+ HQ
Sbjct: 1042 AHQETVKDFRL---LQDSRLLSWSFDGTVKVWNVITG------------RIERDFTCHQG 1086
Query: 303 CTNGVRW 309
Sbjct: 1087 TVLSCAI 1093
Score = 59.8 bits (145), Expect = 5e-10
Identities = 56/313 (17%), Positives = 94/313 (30%), Gaps = 71/313 (22%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
P + D ++ + N R + + +
Sbjct: 971 PHLEYVAFGDEDGAIK------------IIELPNNRVF--SSGVGHKKAV---------R 1007
Query: 71 S---SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
+ DG + SS + I +W+ G+ V D +
Sbjct: 1008 HIQFTADG--KTLISSSEDSVIQVWNWQTGDYVFLQAHQETV------KDFRLLQDSRLL 1059
Query: 128 YAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGL 185
F VK+++ R+ + V + AI D + + K +
Sbjct: 1060 SWSFDGTVKVWNVIT--GRIE-RDFTC--HQGTVLSCAI---SSDATKFSSTSADKTAKI 1111
Query: 186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
+S PL LKGHNG + FS +GILL +G + EI W++ + G +LH+
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD-NGEIRIWNVSD-GQLLHSCAPIS 1169
Query: 246 STN---------QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK 296
V F + S L+S G L WNV T +
Sbjct: 1170 VEEGTATHGGWVTDVCF--SPDSKTLVSA--GGYLKWWNVAT------------GDSSQT 1213
Query: 297 FSAHQDCTNGVRW 309
F + +
Sbjct: 1214 FYTNGTNLKKIHV 1226
Score = 56.4 bits (136), Expect = 6e-09
Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 24/205 (11%)
Query: 114 HAYSLA-FSLDGNKIYAGFLSEVKIFSTDRPGRECVS--RNLKPWFR------KNIVSAI 164
+ L + +++Y + K + +K R + V
Sbjct: 562 NIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHA 621
Query: 165 AINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC 224
+ A K + +F G L +K H + FSS+ + + + D
Sbjct: 622 CFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-DK 679
Query: 225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS 284
++ WD G ++HT+ +F S L +G+ + L +W++N
Sbjct: 680 KVKIWDSAT-GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ------ 732
Query: 285 PYEESVQEPLYKFSAHQDCTNGVRW 309
+E H + N R+
Sbjct: 733 ------KECRNTMFGHTNSVNHCRF 751
Score = 54.4 bits (131), Expect = 3e-08
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 39/235 (16%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGREC 147
+ ++ + GE + + DEV AFS D + I +VKI+ + G+
Sbjct: 639 LQVFKAETGEKLLDIKAHE--DEV---LCCAFSSDDSYIATCSADKKVKIWDSAT-GKL- 691
Query: 148 VSRNLKPWFR-KNIVSAIAINPV-HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT 205
+ + V+ + + A G+ + L+ + + GH +
Sbjct: 692 ----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747
Query: 206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL------TSCS 259
H FS + LL S + D + WD+R+ + + CS
Sbjct: 748 HCRFSPDDELLASCSA-DGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805
Query: 260 -----NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
+ ++ N + +++++TS + E + H +
Sbjct: 806 WSADGDKIIVAAKNK-VLLFDIHTS--------GLLAEIH---TGHHSTIQYCDF 848
Score = 52.5 bits (126), Expect = 1e-07
Identities = 52/286 (18%), Positives = 95/286 (33%), Gaps = 71/286 (24%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK- 69
DG L+++S D+ ++ VW L+ + + D+
Sbjct: 1013 ADGKTLISSSEDSVIQ------------VWNWQTGDYV---FLQAHQETV-KDFRLLQDS 1056
Query: 70 ---TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK 126
+ S DG T + +W+ + G I+ + + V S A S D K
Sbjct: 1057 RLLSWSFDG-T-----------VKVWNVITGRIERDFTCHQ--GTV---LSCAISSDATK 1099
Query: 127 IYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTY 179
+ S KI+S D + + V A D + A G
Sbjct: 1100 FSST--SADKTAKIWSFD--LLSPLHE-----LKGHNGCVRCSAF---SLDGILLATGDD 1147
Query: 180 SKIIGLFSDSDGRPLF---------FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
+ I +++ SDG+ L H G +T + FS + L S + W+
Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA---GGYLKWWN 1204
Query: 231 LRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276
+ G TF + ++++ + ++ + G L I V
Sbjct: 1205 VAT-GDSSQTFYTNGTNLKKIHV--SPDFRTYVTVDNLGILYILQV 1247
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 63.0 bits (154), Expect = 4e-11
Identities = 44/274 (16%), Positives = 87/274 (31%), Gaps = 46/274 (16%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
DG L + + H+ W S +I +
Sbjct: 334 ADGKTLFSADAEGHIN------------SWDISTGISNR--VFPDVHATMITG-IKT--- 375
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
+ G S + + + G + ++ N++ LA S DG+ A
Sbjct: 376 -TSKG---DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS--QPLGLAVSADGDIAVAA 429
Query: 131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSD 188
+ I+S + S +A+ D A+G + ++
Sbjct: 430 CYKHIAIYSHGKLTEV---------PISYNSSCVAL---SNDKQFVAVGGQDSKVHVYKL 477
Query: 189 SDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
S H IT + FS+NG L + + ++I + + N + HT T
Sbjct: 478 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNFELAHTNSWTFHT 536
Query: 248 NQRVY---FDLTSCSNYLLSGNTNGDLSIWNVNT 278
+V + + + L +G+ + + +WN+N
Sbjct: 537 A-KVACVSW--SPDNVRLATGSLDNSVIVWNMNK 567
Score = 56.1 bits (136), Expect = 7e-09
Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 22/205 (10%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHA---YSLAFSLDGNKIYAGFLSE---VKIFSTDR 142
I L++ V G + + + H+ + L +S DG KI + S +KI++
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNV-AHSGSVFGLTWSPDGTKIASA--SADKTIKIWNVA- 269
Query: 143 PGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH 200
+ K + + I + + I + G GH
Sbjct: 270 -TLKV----EKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN 260
N IT L S++G LFS + I WD+ + + +
Sbjct: 324 NKAITALSSSADGKTLFSADA-EGHINSWDISTGISNRVFPDVHATMITGIKT---TSKG 379
Query: 261 YLLSGNTNGDLSIWNVNTSNLPSSP 285
L + + + L + S + SS
Sbjct: 380 DLFTVSWDDHLKVVPAGGSGVDSSK 404
Score = 53.0 bits (128), Expect = 6e-08
Identities = 26/196 (13%), Positives = 64/196 (32%), Gaps = 28/196 (14%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I ++ G++ Y ++ +A S D + G + V ++ G
Sbjct: 434 IAIYSH--GKLTEVPISY-------NSSCVALSNDKQFVAVG--GQDSKVHVYKLS--GA 480
Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFF---LKGH 200
++++A + S+ + +S ++ L H
Sbjct: 481 SVSEVKTIV--HPAEITSVAF---SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535
Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN 260
+ + +S + + L +G+ D +I W++ P + V +
Sbjct: 536 TAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPSD-HPIIIKGAHAMSSVNSVIWLNET 593
Query: 261 YLLSGNTNGDLSIWNV 276
++S + ++ WNV
Sbjct: 594 TIVSAGQDSNIKFWNV 609
Score = 52.6 bits (127), Expect = 8e-08
Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 30/211 (14%)
Query: 89 IHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE-----VKIFSTD 141
+ +WD+ +K T ++ V +++ + +I A E +F D
Sbjct: 83 VRIWDTTQTTHILKTTIPVFS--GPV---KDISWDSESKRIAAV--GEGRERFGHVFLFD 135
Query: 142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
NL + ++++ P P G+ + +F + H
Sbjct: 136 --TGTSN-GNLTG--QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 190
Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST----NQRVY---FD 254
+ + ++ +G L S D I+ ++ + G F + V+ +
Sbjct: 191 KFVHSVRYNPDGSLFASTGG-DGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTW- 247
Query: 255 LTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
+ + S + + + IWNV T + +
Sbjct: 248 -SPDGTKIASASADKTIKIWNVATLKVEKTI 277
Score = 49.1 bits (118), Expect = 1e-06
Identities = 47/320 (14%), Positives = 88/320 (27%), Gaps = 77/320 (24%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
P G + ++R +W + L T+ + G + D W
Sbjct: 69 PSGYYCASGDVHGNVR------------IWDTTQTTHILKTTIPVFSGP-VKDISW---- 111
Query: 71 SSIDGFTSYFLCS---SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-K 126
+ + + H++ G + S+ F +
Sbjct: 112 -DSESKR---IAAVGEGRERFGHVFLFDTGTSNGNLTGQA--RAM---NSVDFKPSRPFR 162
Query: 127 IYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTY 179
I +G S+ V IF + P + S F V ++ N PD + A
Sbjct: 163 IISG--SDDNTVAIF--EGPPFKFKST-----FGEHTKFVHSVRYN---PDGSLFASTGG 210
Query: 180 SKIIGLFSDSDGRPL-------FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR 232
I L++ DG H+G + L +S +G + S + D I W++
Sbjct: 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVA 269
Query: 233 NPGCILHTFPRQVSTNQRVYFDLTSCS---NYLLSGNTNGDLSIWNVNTSNLPSSPYEES 289
+Q++ L+S + NG ++ N
Sbjct: 270 TLKVEKTIPVGTRIEDQQL-----GIIWTKQALVSISANGFINFVNPEL----------- 313
Query: 290 VQEPLYKFSAHQDCTNGVRW 309
H +
Sbjct: 314 -GSIDQVRYGHNKAITALSS 332
Score = 37.2 bits (87), Expect = 0.006
Identities = 13/135 (9%), Positives = 37/135 (27%), Gaps = 18/135 (13%)
Query: 114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHP 171
A L + G+KI + V + + + + + + P
Sbjct: 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSL------TDTEI-YTEHSHQTTVAKTS---P 69
Query: 172 D--ICALGTYSKIIGLFSDSDGRPLFF--LKGHNGGITHLEFSSNGILLFSG-ARKDCEI 226
CA G + ++ + + + +G + + + S + + ++
Sbjct: 70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129
Query: 227 ICWDLRNPGCILHTF 241
+ G
Sbjct: 130 HVFLFDT-GTSNGNL 143
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 62.0 bits (151), Expect = 7e-11
Identities = 43/324 (13%), Positives = 100/324 (30%), Gaps = 68/324 (20%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPK 69
GT S D+ L + L + + ++ D W
Sbjct: 33 VSGTVDANFSTDSSLELWSLLA--------------ADSEKPIASLQVDSKFNDLDW--- 75
Query: 70 TSSIDGFTSYFLCSSMY-APIHLWDSVGGEIKATYRPYNQVDEVTHA-YSLAFS-LDGNK 126
S + + ++ + L+ + + + + ++ F+ N
Sbjct: 76 --SHNNKI---IAGALDNGSLELYSTNEA--NNAINSMARFSNHSSSVKTVKFNAKQDNV 128
Query: 127 I-YAGFLSEVKIFSTDRPGRECVSRNLKPWFRK----NIVSAIAINPVHPDICALGTYSK 181
+ G E+ I+ ++ + + + V ++A N + A S
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188
Query: 182 IIGLFSDSDGRPLFFLK------GHNGGITHLEFSSNG---ILLFSGARKDCEIICWDLR 232
++ + + L G ++ +E+ + +G+ D I+ WDLR
Sbjct: 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248
Query: 233 NPGCILHTFPR----QVSTNQRVYF---DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
N L T + + + + + D + LLS + + +WN ++
Sbjct: 249 NANTPLQTLNQGHQKGILS---LDWCHQD----EHLLLSSGRDNTVLLWNPESA------ 295
Query: 286 YEESVQEPLYKFSAHQDCTNGVRW 309
E L +F A + ++
Sbjct: 296 ------EQLSQFPARGNWCFKTKF 313
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV 251
R F H+ + + +G + + + D + W L + + +
Sbjct: 14 RTATFAWSHDKIPLLVSGTVSGTVDANFST-DSSLELWSLLAADS-EKPI-ASLQVDSKF 70
Query: 252 YFDLT--SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
DL + + NG L +++ N +N + +FS H V
Sbjct: 71 N-DLDWSHNNKIIAGALDNGSLELYSTNEANNAI--------NSMARFSNHSSSVKTV 119
Score = 38.5 bits (90), Expect = 0.002
Identities = 17/159 (10%), Positives = 42/159 (26%), Gaps = 15/159 (9%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHA-YSLAFSLDGNKIYAGFLSE------VKIFSTD 141
+WD + + + + + + A + + I+
Sbjct: 190 ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT-ATGSDNDPSILIWDL- 247
Query: 142 RPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG 199
R L+ + + + ++ + + L++ L
Sbjct: 248 RNANTP----LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303
Query: 200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
+F+ LF+ A D +I L+N L
Sbjct: 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 60.9 bits (147), Expect = 1e-10
Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 17/198 (8%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
I + DS ++ + +E+ + Y I+A + S + + V
Sbjct: 106 ITILDSKTNKVLREIEV-DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV 164
Query: 149 SRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPL--FFLKGHNGGI 204
S+ + H D + AL + I+ +++ S F I
Sbjct: 165 HSA----KSDVEYSSGVL---HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217
Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTSCSNYL 262
++F+ NG + D ++C+DLR L T+ V +D+ +
Sbjct: 218 KEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275
Query: 263 LSGNT-NGDLSIWNVNTS 279
++ + + L+I+ +
Sbjct: 276 IAYSNESNSLTIYKFDKK 293
Score = 58.6 bits (141), Expect = 6e-10
Identities = 32/246 (13%), Positives = 73/246 (29%), Gaps = 13/246 (5%)
Query: 37 KSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG 96
K+ P + +L + Y K+ D + +C +H
Sbjct: 10 KAPKWPILKNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVC--MCRCEDGALHFTQLKD 67
Query: 97 GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGRECVSRNLKPW 155
+ T N H ++ N++ + +++ I + V R ++
Sbjct: 68 SKTITTITTPNPRTGGEHPAIISRG-PCNRLLLLYPGNQITILDSK---TNKVLREIEVD 123
Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-NGGITHLEFSSNGI 214
I+ N V+ + IG S D + + + +
Sbjct: 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL 183
Query: 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN-QRVYFDLTSCSNYLLSGNTNGDLSI 273
LL + D + ++L +P FP + V F + + Y + + +
Sbjct: 184 LLALYS-PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF---ADNGYWMVVECDQTVVC 239
Query: 274 WNVNTS 279
+++
Sbjct: 240 FDLRKD 245
Score = 31.3 bits (70), Expect = 0.40
Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 23/121 (19%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTL-KIKEGGIIYDYVWYPK 69
D L S D L ++L S P + + E I + +
Sbjct: 180 KDSLLLALYSPDGILDVYNLSS--------------PDQASSRFPVDEEAKIKEVKFAD- 224
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+G Y++ + +D Y Y + T + G + A
Sbjct: 225 ----NG---YWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA 277
Query: 130 G 130
Sbjct: 278 Y 278
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 59.3 bits (144), Expect = 5e-10
Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 23/204 (11%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS-LDGNKIYAGFLSE---VKIFSTDRPG 144
I LWD + + D +T + F+ + N+++ S +
Sbjct: 98 IILWDYDVQNKTSFIQGMGPGDAIT---GMKFNQFNTNQLFVS--SIRGATTLRDFSGSV 152
Query: 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGI 204
+ W + ++ + A G + + L DG +F K H +
Sbjct: 153 IQVF-AKTDSW--DYWYCCVDVSVSRQML-ATGDSTGRLLLL-GLDGHEIFKEKLHKAKV 207
Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRN---PGCILHTFP--RQVSTNQRVYFDLTSCS 259
TH EF+ L + + D + WDLRN + P + V+ YF+ T S
Sbjct: 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA---AYFNPTD-S 263
Query: 260 NYLLSGNTNGDLSIWNVNTSNLPS 283
LL+ + ++ +++ + P
Sbjct: 264 TKLLTTDQRNEIRVYSSYDWSKPD 287
Score = 50.8 bits (122), Expect = 2e-07
Identities = 27/226 (11%), Positives = 71/226 (31%), Gaps = 30/226 (13%)
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYA 129
S G + + + ++ T P++ V SL + +
Sbjct: 37 KSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFD--RRV---TSLEWHPTHPTTVAV 91
Query: 130 GFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL- 185
G S+ + ++ D + + + P + ++ + N + + + + L
Sbjct: 92 G--SKGGDIILWDYDVQNKTSFIQGMGP---GDAITGMKFNQFNTNQLFVSSIRGATTLR 146
Query: 186 -FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI---LHTF 241
FS S + + ++ S + +L +G ++ L LH
Sbjct: 147 DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-TGRLLLLGLDGHEIFKEKLHK- 204
Query: 242 PRQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
+V+ F C + + + + + +W++ +S
Sbjct: 205 -AKVTH---AEFNPR---CDWLMATSSVDATVKLWDLRNIKDKNSY 243
Score = 42.3 bits (100), Expect = 1e-04
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 22/125 (17%)
Query: 12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTS 71
D T LLT N +R + + +++ + +K W+P
Sbjct: 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA---------TWHPMYD 312
Query: 72 ------SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
D + I ++D+ G + R N ++ FS G+
Sbjct: 313 LIVAGRYPDDQLL----LNDKRTIDIYDANSGGLVHQLRDPNAAGIIS---LNKFSPTGD 365
Query: 126 KIYAG 130
+ +G
Sbjct: 366 VLASG 370
Score = 36.6 bits (85), Expect = 0.010
Identities = 45/256 (17%), Positives = 81/256 (31%), Gaps = 73/256 (28%)
Query: 7 VDEAPDGTCLLTNSNDNHLRTFDLPS------ELHCKSVW----RPSNQRPKLNYTLKIK 56
VD + L T + L L +LH V P
Sbjct: 169 VDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCD----------- 217
Query: 57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA- 115
W TSS+D + LWD + K +Y + E+ H
Sbjct: 218 ---------WLMATSSVDAT------------VKLWDLRNIKDKNSY-----IAEMPHEK 251
Query: 116 --YSLAFS-LDGNKIYAGFLS-----EVKIF--STDRPGRECVSRNLKPWFRKNIVSA-- 163
+ F+ D K+ L+ E++++ + + + + + A
Sbjct: 252 PVNAAYFNPTDSTKL----LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATW 307
Query: 164 -----IAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN--GGITHLEFSSNGILL 216
+ + +PD L + I ++ + G + L+ N G I+ +FS G +L
Sbjct: 308 HPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVL 367
Query: 217 FSGARKDCEIICWDLR 232
SG I+ W+
Sbjct: 368 ASGM--GFNILIWNRE 381
Score = 33.5 bits (77), Expect = 0.084
Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 32/210 (15%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA--GFLSEVKIFSTDRPGRE 146
+ L G EI +V F+ + + A + VK++ D +
Sbjct: 187 LLLLGLDGHEIFKEKLHKAKV------THAEFNPRCDWLMATSSVDATVKLW--DLRNIK 238
Query: 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG--- 203
+ + + V+A NP I ++S D + H
Sbjct: 239 DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298
Query: 204 ---ITHLEFSSNGILLFSGARKDCEIIC--------WDLRNPGCILHTFPRQVSTNQRVY 252
+ L+ +G D +++ +D + G ++H +
Sbjct: 299 HLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANS-GGLVHQLRDPNAAG---I 354
Query: 253 FDLTSCS---NYLLSGNTNGDLSIWNVNTS 279
L S + L SG ++ IWN +
Sbjct: 355 ISLNKFSPTGDVLASGM-GFNILIWNREDT 383
Score = 33.5 bits (77), Expect = 0.084
Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 17/128 (13%)
Query: 185 LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KDCEIICWDLRNPGCI--LHTF 241
F G + ++ SS G + + R E L++ F
Sbjct: 13 YFQGGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPF 72
Query: 242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ 301
R+V++ + + T + G+ GD+ +W+ + N + +
Sbjct: 73 DRRVTS---LEWHPTH-PTTVAVGSKGGDIILWDYDVQN----------KTSFIQGMGPG 118
Query: 302 DCTNGVRW 309
D G+++
Sbjct: 119 DAITGMKF 126
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 56.4 bits (135), Expect = 5e-09
Identities = 41/321 (12%), Positives = 86/321 (26%), Gaps = 18/321 (5%)
Query: 19 NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSIDGFT 77
+ HL FD C +++ + I G ++D W+ +
Sbjct: 167 EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHA-PHLV 225
Query: 78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQ--VDEVTHAYSLAFSLD---GNKIYAGFL 132
S I+ + + + ++ A SL + D + GF
Sbjct: 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK 285
Query: 133 S-EVKIFSTDRPGRECVSRNLKPWFRKNIVS-AIAINPVHPDICALGTYSKIIGLFSDSD 190
+ V F P I+S + A + + + +F+ D
Sbjct: 286 NGFVAEFDLTDPEV---PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342
Query: 191 GRPLFFLKGHNGG--ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN 248
G + + + + R +H + +T
Sbjct: 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS-LRAVPSRA-AFAVHPLVSRETTI 400
Query: 249 QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308
+ + +L+G+ +G L I N L + Q+ L + +
Sbjct: 401 TAIGV--SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458
Query: 309 WKHHKFERDLLVADATCSGQI 329
+E L + +I
Sbjct: 459 RIDSSYEVYPLTVNDVSKAKI 479
Score = 50.6 bits (120), Expect = 3e-07
Identities = 25/274 (9%), Positives = 70/274 (25%), Gaps = 24/274 (8%)
Query: 39 VWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE 98
+ ++ ++ + T+ + +C + +D E
Sbjct: 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE 298
Query: 99 IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGRECVSRNLKPWFR 157
+ + Y + + + + + + IF+ + + FR
Sbjct: 299 VPSFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR---FR 354
Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF 217
+ + + P + + + L IT + S ++
Sbjct: 355 GSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL 413
Query: 218 SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSN-YLLSGNTNGDLSIWN 275
+G+ D +I + + R++ +D + + Y + + N
Sbjct: 414 AGSA-DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVN 472
Query: 276 VNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
+ K AH +W
Sbjct: 473 DVSK---------------AKIDAHGINITCTKW 491
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 55.8 bits (134), Expect = 6e-09
Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 8/228 (3%)
Query: 81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFST 140
+ + +H+WD V + + + V ++ + G+ I T
Sbjct: 75 FVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRIT 134
Query: 141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH 200
D V + + + + ++ G+ + +K H
Sbjct: 135 DDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194
Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY---FDLTS 257
I + + ++ + ++ I + + G ++ F R V + +
Sbjct: 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRG-LDRADVVDMKWS--T 250
Query: 258 CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
+ L + L ++ + + Y F + N
Sbjct: 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY-FQSEWSLCN 297
Score = 45.8 bits (108), Expect = 1e-05
Identities = 29/220 (13%), Positives = 71/220 (32%), Gaps = 23/220 (10%)
Query: 116 YSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA 175
F+ D + + L +I++ P +S+ ++ +S + + +
Sbjct: 23 TDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQEMRH------LSKVRMLHRTNYVAF 75
Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235
+ +++ ++ D + + +K + L S I++ I + NP
Sbjct: 76 VTGVKEVVHIWDDVKKQDVSRIKVDA-PVKDLFLSREFIVVSY----GDVISVFKFGNPW 130
Query: 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295
+ R + L + + L L T+ ++++
Sbjct: 131 KRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQ-DQGVQQKAILGKGV 189
Query: 296 KFSAHQDCTNGVRWKHHKFERD--LLVADATCSGQITNVK 333
AH + V + R ++ ATCS T ++
Sbjct: 190 LIKAHTNPIKMV-----RLNRKSDMV---ATCSQDGTIIR 221
Score = 37.3 bits (86), Expect = 0.006
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
P+ + +T EF+ + L K EI +++ I+ R +S +
Sbjct: 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEI--YNVHPVAHIMSQEMRHLSKVRM 66
Query: 251 VYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
++ + + IW+
Sbjct: 67 LH----RTNYVAFVTGVKEVVHIWDDVK 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 55.1 bits (132), Expect = 1e-08
Identities = 25/196 (12%), Positives = 63/196 (32%), Gaps = 9/196 (4%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
+ ++D V K + + +++ + D + ++S D
Sbjct: 127 LLVFD-VDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-GDVYSIDINSIPEE 184
Query: 149 SRNLKPWF-RKNIVSAIAINPVHPDICALGTYS--KIIGLFSDSDGRPLF-FLKGHNGGI 204
+P ++++ + + + T + I + + +L GH +
Sbjct: 185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFV 244
Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLS 264
+ + + +LL S D +I WD + G L TF + + +
Sbjct: 245 SSICCGKDYLLL-SAGG-DDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNE 301
Query: 265 GNTNGDLSIWNVNTSN 280
N + ++ + S
Sbjct: 302 NNDIIEFAVSKIIKSK 317
Score = 53.9 bits (129), Expect = 3e-08
Identities = 22/179 (12%), Positives = 54/179 (30%), Gaps = 20/179 (11%)
Query: 117 SLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL 176
+L S DG+ ++A + + F P + W + N +
Sbjct: 9 NLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGK---WSDDFDKIQESRNTTAKEQQGQ 65
Query: 177 GTYS------------KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC 224
+ + I + P I +L +S+ L + A D
Sbjct: 66 SSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDK 125
Query: 225 EIICWDLRNPGCILHTFPRQVSTNQRVY---FDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
++ +D+ + ++ ++R ++ + GD+ ++N+
Sbjct: 126 SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI--AEDDTTVIIADKFGDVYSIDINSIP 182
Score = 46.6 bits (110), Expect = 7e-06
Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 23/176 (13%)
Query: 116 YSLAFSLDGNKIYA--GFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDI 173
+L + D +++ A + +F D+ + + + F K +AI+I +
Sbjct: 106 RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKR-PNAISIAEDDTTV 164
Query: 174 ---CALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI---LLFSGARKDCEII 227
G I + + GH +T + + + + R D I
Sbjct: 165 IIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-DEHIK 223
Query: 228 CWDLRNPGCIL-----HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
+ H VS+ + LLS + + W+ T
Sbjct: 224 ISHYPQCFIVDKWLFGHK--HFVSS---ICC---GKDYLLLSAGGDDKIFAWDWKT 271
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 54.0 bits (131), Expect = 2e-08
Identities = 68/316 (21%), Positives = 122/316 (38%), Gaps = 74/316 (23%)
Query: 8 DEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWY 67
++ + ++T S D+ ++ VW+ ++R L ++L+ + G+
Sbjct: 43 NKKENSETVVTGSLDDLVK------------VWKWRDERLDLQWSLEGHQLGV------- 83
Query: 68 PKTS---SIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD 123
S S S S+ A I LWD G+ + + ++LAFS D
Sbjct: 84 --VSVDISHTLPI---AASSSLDAHIRLWDLENGKQIKSIDAGP--VDA---WTLAFSPD 133
Query: 124 GNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGT 178
+ G + V IF + +L R + +IA +P D A G
Sbjct: 134 SQYLATG--THVGKVNIF--GVESGKKE-YSLDT--RGKFILSIAYSP---DGKYLASGA 183
Query: 179 YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
II +F + G+ L L+GH I L FS + LL + + D I +D+++ +
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD-DGYIKIYDVQH-ANLA 241
Query: 239 HTFP---RQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP 293
T V V F D + +S +++ + +W+V T +
Sbjct: 242 GTLSGHASWVLN---VAFCPD----DTHFVSSSSDKSVKVWDVGT------------RTC 282
Query: 294 LYKFSAHQDCTNGVRW 309
++ F HQD GV++
Sbjct: 283 VHTFFDHQDQVWGVKY 298
Score = 36.3 bits (85), Expect = 0.009
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 43/159 (27%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I+++D G++ T + + SL FS D + S+ +KI+
Sbjct: 188 INIFDIATGKLLHTLEGHA--MPI---RSLTFSPDSQLLVTA--SDDGYIKIYDVQ---- 236
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-----------GR 192
NL + V +A P D T+ S S
Sbjct: 237 ---HANLAGTLSGHASWVLNVAFCP---D----DTH-----FVSSSSDKSVKVWDVGTRT 281
Query: 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231
+ H + ++++ NG + S D EI +D
Sbjct: 282 CVHTFFDHQDQVWGVKYNGNGSKIVSVG-DDQEIHIYDC 319
Score = 27.4 bits (62), Expect = 6.1
Identities = 13/135 (9%), Positives = 39/135 (28%), Gaps = 26/135 (19%)
Query: 181 KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN----GILLFSGARKDCEIICWDLRNPGC 236
+ ++ G + H+ I + + +N + +G+ D + W R+
Sbjct: 12 NLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSL-DDLVKVWKWRDERL 70
Query: 237 -ILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE 292
+ + V + V + S + + + +W++ +
Sbjct: 71 DLQWSLEGHQLGVVS---VDI--SHTLPIAASSSLDAHIRLWDLEN------------GK 113
Query: 293 PLYKFSAHQDCTNGV 307
+ A +
Sbjct: 114 QIKSIDAGPVDAWTL 128
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 53.8 bits (130), Expect = 3e-08
Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 34/153 (22%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
+ +W E KA R + V ++++ + + + + + +PG +
Sbjct: 258 VRVWVVATKECKAELREHR--HVV---ECISWAPESSYSSISEATGSETKKSGKPGPFLL 312
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
S G+ K I ++ S G L L GH+ + +
Sbjct: 313 S---------------------------GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 345
Query: 209 FSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
F S G + S A D + WD +N + T
Sbjct: 346 FHSGGKFILSCAD-DKTLRVWDYKN-KRCMKTL 376
Score = 42.2 bits (100), Expect = 2e-04
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 23/155 (14%)
Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF 217
++ V+ + +PV + + I ++ G LKGH + + F +G LL
Sbjct: 108 RSPVTRVIFHPVFSVM-VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 218 SGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
S + D I WD + + T VS+ V ++++S + + + +W
Sbjct: 167 SCSA-DMTIKLWDFQG-FECIRTMHGHDHNVSS---VSI--MPNGDHIVSASRDKTIKMW 219
Query: 275 NVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
V T + F+ H++ VR
Sbjct: 220 EVQTG------------YCVKTFTGHREWVRMVRP 242
Score = 39.9 bits (94), Expect = 8e-04
Identities = 39/243 (16%), Positives = 80/243 (32%), Gaps = 50/243 (20%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I +WD G+ + T + + D V ++F G + + S +K++
Sbjct: 132 IKVWDYETGDFERTLKGHT--DSV---QDISFDHSGKLLASC--SADMTIKLWDFQG--- 181
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG 203
++ + VS+++I P + D + K I ++ G + GH
Sbjct: 182 ---FECIRT-MHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236
Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL----HT-------------FPRQVS 246
+ + + +G L+ S + D + W + C H +
Sbjct: 237 VRMVRPNQDGTLIASCSN-DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
+LLSG+ + + +W+V+T L H + G
Sbjct: 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG------------MCLMTLVGHDNWVRG 343
Query: 307 VRW 309
V +
Sbjct: 344 VLF 346
Score = 38.0 bits (89), Expect = 0.003
Identities = 43/248 (17%), Positives = 83/248 (33%), Gaps = 60/248 (24%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I LWD G E T ++ V S++ +G+ I + S +K++ G
Sbjct: 174 IKLWDFQGFECIRTMHGHD--HNV---SSVSIMPNGDHIVSA--SRDKTIKMWEVQT-GY 225
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
+K F + V + N D + A + + + ++ + L+ H
Sbjct: 226 C-----VKT-FTGHREWVRMVRPN---QDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 202 GGITHLEFS--------------------SNGILLFSGARKDCEIICWDLRNPGCILHTF 241
+ + ++ G L SG+R D I WD+ G L T
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-DKTIKMWDVST-GMCLMTL 334
Query: 242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ 301
+ + V F S ++LS + L +W+ + + +AH+
Sbjct: 335 VGHDNWVRGVLF--HSGGKFILSCADDKTLRVWDYKN------------KRCMKTLNAHE 380
Query: 302 DCTNGVRW 309
+ +
Sbjct: 381 HFVTSLDF 388
Score = 36.4 bits (85), Expect = 0.009
Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 36/132 (27%)
Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQ 244
+ L GH +T + F ++ S + D I WD G T
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASE-DATIKVWDYET-GDFERTLKGHTDS 152
Query: 245 VSTNQRVYFD-----LTSCSNYLLSGNTNGDLSI--WNVNTSNLPSSPYEESVQEPLYKF 297
V + FD L SCS D++I W+ E +
Sbjct: 153 VQD---ISFDHSGKLLASCSA---------DMTIKLWDFQG------------FECIRTM 188
Query: 298 SAHQDCTNGVRW 309
H + V
Sbjct: 189 HGHDHNVSSVSI 200
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 51.1 bits (121), Expect = 2e-07
Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 19/244 (7%)
Query: 105 PYNQVDEVTHAYSLAFSLDGNKIYAGFLS-----EVKIFSTDRPGRECVSRNLKPWFRKN 159
V + LA S D + A +S + F E + + K
Sbjct: 85 QGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL 144
Query: 160 I------VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG 213
+ V + NP P + A+ I + ++ + +T + +S G
Sbjct: 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG 204
Query: 214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSNY-LLSGNTNGDL 271
L G +++ ++ + + P ++ V D+ Y D
Sbjct: 205 KQLAVG-KQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263
Query: 272 SIWNVNTSNLPSSPYEESVQEPLY-KFSAHQDCTNGVRWKHHKFER----DLLVADATCS 326
++ + P +E ++ F + R H+ DL++A + S
Sbjct: 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323
Query: 327 GQIT 330
+++
Sbjct: 324 TEVS 327
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 50.7 bits (122), Expect = 3e-07
Identities = 45/325 (13%), Positives = 94/325 (28%), Gaps = 62/325 (19%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
+G +L+ +D + +DL + +S + + + WYP
Sbjct: 54 VEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSV-ETVQWYPH- 110
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-- 128
D F SS + +WD+ + + V YS S K
Sbjct: 111 ---DT--GMFTSSSFDKTLKVWDTNTLQTADVFNFEETV------YSHHMSPVSTKHCLV 159
Query: 129 --AGFLSEVKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICA--------- 175
+V++ + G + + + A++ +P + I A
Sbjct: 160 AVGTRGPKVQLCDL-KSGSC-----SHI-LQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 176 ---LGTYSKIIGLFSDSDGRP----LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIIC 228
+ S + +G+ HNG + L F+S+G+ L + D +
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRL 271
Query: 229 WDLRNPGCIL----HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS 284
W+ N L + CS+ + ++++ V +
Sbjct: 272 WNSSNGENTLVNYGKVCNNSKKGLKFTVS--CGCSSEFVFVPYGSTIAVYTVYSG----- 324
Query: 285 PYEESVQEPLYKFSAHQDCTNGVRW 309
E + H + +
Sbjct: 325 -------EQITMLKGHYKTVDCCVF 342
Score = 41.5 bits (98), Expect = 3e-04
Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 22/165 (13%)
Query: 89 IHLWD-SVGGEIKATYRPYNQVDEVT-------HA---YSLAFSLDGNKIYAGFLSE--- 134
+ LWD T +N H L F+ DG +
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV--GTDNR 268
Query: 135 VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR 192
++++++ E N K + + Y I +++ G
Sbjct: 269 MRLWNSSN--GENTLVNYGKVCNNSKKGLKFTVSCGCSSEF-VFVPYGSTIAVYTVYSGE 325
Query: 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
+ LKGH + F SN L+SG+R DC I+ W +
Sbjct: 326 QITMLKGHYKTVDCCVFQSNFQELYSGSR-DCNILAWVPSLYEPV 369
Score = 37.2 bits (87), Expect = 0.006
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 74/221 (33%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
DG LLT DN +R +W SN + G + + K
Sbjct: 255 SDGLHLLTVGTDNRMR------------LWNSSNGEN-----TLVNYGKVCNNSKKGLKF 297
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYR-PYNQVDEVTHAYSLAFSLDGNKIYA 129
+ G +S F+ + I ++ GE + Y V F + ++Y+
Sbjct: 298 TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV------DCCVFQSNFQELYS 351
Query: 130 GFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS 189
G S D N+ W S
Sbjct: 352 G--------SRDC--------NILAW----------------VP---------------S 364
Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
P+ + T + + +S + ++ W
Sbjct: 365 LYEPV---PDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS 402
Score = 34.5 bits (80), Expect = 0.038
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 13/120 (10%)
Query: 171 PDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFS-SNGILLFSGARKDCEIICW 229
D L + + + H GGI L+ G + SG D I+ +
Sbjct: 13 EDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGS-DGVIVLY 71
Query: 230 DLRNPGCILHTFPRQVSTNQRVYFD-----LTSC------SNYLLSGNTNGDLSIWNVNT 278
DL N + + V + R + D + + + S + + L +W+ NT
Sbjct: 72 DLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131
Score = 30.3 bits (69), Expect = 0.92
Identities = 26/246 (10%), Positives = 76/246 (30%), Gaps = 42/246 (17%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS-LDGNKIYAGFLSE---VKIFSTDRPG 144
+ + + R + + +L ++G + +G + ++ +
Sbjct: 25 RRVLGLELNKDRDVERIHG--GGI---NTLDIEPVEGRYMLSG--GSDGVIVLYDLENSS 77
Query: 145 RECVSRNLKPWFR--------KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF 196
R+ + V + P + ++ K + ++ + +
Sbjct: 78 RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137
Query: 197 LKGHNGGITHLEFSSNG---ILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQR 250
+ S L+ G R ++ DL++ G H +++
Sbjct: 138 F-NFEETVYSHHMSPVSTKHCLVAVGTR-GPKVQLCDLKS-GSCSHILQGHRQEILA--- 191
Query: 251 VYF--DLTSCSNYLL-SGNTNGDLSIWNVNTSNLPSSPYE----ESVQEPLYKFSAHQDC 303
V + +Y+L + + + + +W+V ++ + + Q +AH
Sbjct: 192 VSWSPR----YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247
Query: 304 TNGVRW 309
NG+ +
Sbjct: 248 VNGLCF 253
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 49.5 bits (119), Expect = 6e-07
Identities = 53/323 (16%), Positives = 105/323 (32%), Gaps = 66/323 (20%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK--EG--GIIYDYVW 66
D L++ S D + +W+ + + + K G + D
Sbjct: 37 EDSPVLISGSRDKTVM------------IWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL 84
Query: 67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK 126
S + + + SS + LWD G + + EV YS+AFS D +
Sbjct: 85 -----SQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEV---YSVAFSPDNRQ 132
Query: 127 IYAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII 183
I + +K+++ EC + + + VS + +P+ + ++
Sbjct: 133 ILSA--GAEREIKLWNIL---GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187
Query: 184 GLFS----------DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233
S +++ + + K H + HL S NG + +G KD +++ WD+ N
Sbjct: 188 --ASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILN 244
Query: 234 PGCIL----HTFPRQVSTNQRVYFDLTSCSNYLLSG--NTNGDLSIWNVNT-SNLPSSPY 286
++ + F ++ G + I+N+ T S P
Sbjct: 245 LTYPQREFDAGST--INQ---IAF--NPKLQWVAVGTDQG---VKIFNLMTQSKAPVCTI 294
Query: 287 EESVQEPLYKFSAHQDCTNGVRW 309
E + W
Sbjct: 295 EAEPITKAEGQKGKNPQCTSLAW 317
Score = 42.6 bits (101), Expect = 1e-04
Identities = 28/211 (13%), Positives = 60/211 (28%), Gaps = 33/211 (15%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFST-------- 140
I LW+ +G ++ N D V + +S S
Sbjct: 142 IKLWNILGECKFSSAEKENHSDWV---SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198
Query: 141 -DRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFL 197
+ + + K ++ V+ ++I P+ A G K + ++ +
Sbjct: 199 WNTNFQ--IRYTFKA--HESNVNHLSI---SPNGKYIATGGKDKKLLIWDILNLTYPQRE 251
Query: 198 KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF---- 253
I + F+ + G D + ++L +
Sbjct: 252 FDAGSTINQIAFNPKLQWVAVGT--DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309
Query: 254 -DLTSCS-----NYLLSGNTNGDLSIWNVNT 278
TS + L +G T+G + ++ T
Sbjct: 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
Score = 39.9 bits (94), Expect = 7e-04
Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 29/208 (13%)
Query: 89 IHLWDSVGGEIKA-TYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPG 144
+ + G ++ + + V + +S + D + +G S V I+
Sbjct: 7 LDIQVVKRGILEGHS----DWVTSIVAGFSQKENEDSPVLISG--SRDKTVMIWKLYEEE 60
Query: 145 RECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGH 200
+ + VS +A++ + ++ K + L+ G GH
Sbjct: 61 QNGYFGIPHKALTGHNHFVSDLALSQ---ENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117
Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ----------VSTNQR 250
+ + FS + + S + EI W++ C + ++ S +
Sbjct: 118 QSEVYSVAFSPDNRQILSAGA-EREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 251 VYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
+ + Y S +G L +WN N
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNF 203
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 49.6 bits (119), Expect = 7e-07
Identities = 42/253 (16%), Positives = 73/253 (28%), Gaps = 45/253 (17%)
Query: 9 EAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYP 68
+AP+ +C++T S D L+ W + P L++ E D V YP
Sbjct: 137 KAPNYSCVMTGSWDKTLK------------FWDTRSSNPM--MVLQLPERCYCAD-VIYP 181
Query: 69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
+ ++ ++ E + P +A D
Sbjct: 182 MAVVA--------TAERGLIVYQLENQPSEFRRIESPLKH-----QHRCVAIFKDKQNKP 228
Query: 129 AGFLS-----EVKIFSTDRPGRECVSRNLKPWFRKNI----------VSAIAINPVHPDI 173
GF V I + P + K V+ IA +PVH +
Sbjct: 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL 288
Query: 174 CALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233
A + L + + I+ F+ NG + + D + N
Sbjct: 289 -ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG-HEFYN 346
Query: 234 PGCILHTFPRQVS 246
P + F R +
Sbjct: 347 PQKKNYIFLRNAA 359
Score = 35.3 bits (82), Expect = 0.021
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL---HTFPRQVSTNQRVYF 253
+ H G + + +S +G +F+ + D WDL + I H P V T +++
Sbjct: 82 QQMHTGPVLDVCWSDDGSKVFTASC-DKTAKMWDLSSNQAIQIAQHDAP--VKT---IHW 135
Query: 254 DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
+ +++G+ + L W+ +SN
Sbjct: 136 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167
Score = 31.5 bits (72), Expect = 0.41
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 27/96 (28%)
Query: 197 LKGHNGGITHLEFS---SNGILLFSGARKDCEIICWDLRNPGCIL------HTFPRQVST 247
+ I L FS G L +G+ ++ CW++++ G + HT P
Sbjct: 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSW-ANDVRCWEVQDSGQTIPKAQQMHTGP----- 88
Query: 248 NQRVYFDLTSCS-----NYLLSGNTNGDLSIWNVNT 278
+ + + + + + +W++++
Sbjct: 89 -------VLDVCWSDDGSKVFTASCDKTAKMWDLSS 117
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 49.5 bits (118), Expect = 7e-07
Identities = 23/187 (12%), Positives = 51/187 (27%), Gaps = 15/187 (8%)
Query: 110 DEVTHAYSLAFSLDGNKIYAGFLS---EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAI 166
D ++ + + + S + ++ D + + K+ +
Sbjct: 12 DYIS---DIKIIPSKSLLLIT--SWDGSLTVYKFDIQAKNVDLLQSLRY--KHPLLCCNF 64
Query: 167 NPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS-NGILLFSGARKDCE 225
+GT I L + + L + + D
Sbjct: 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW-DGL 123
Query: 226 IICWDLRNPGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP 282
I D RN G + + + F + + S+ L+ G N + + +
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 283 SSPYEES 289
+ EES
Sbjct: 184 NGTIEES 190
Score = 37.1 bits (86), Expect = 0.006
Identities = 34/286 (11%), Positives = 76/286 (26%), Gaps = 68/286 (23%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
P + LL S D L V++ Q ++ ++ + + T
Sbjct: 21 PSKSLLLITSWDGSLT------------VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 71 S------SIDGF------------------TSYFLCSSMYAP-------------IHLWD 93
++ G + + I + D
Sbjct: 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128
Query: 94 -SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL 152
G+ + N + + +++ G + ++ P E + +
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM-NNSQVQWFRLPLCEDDNGTI 187
Query: 153 KPWFRKNIVSAIAINPVHPDICALGTY--SKIIGLFSDS----DGRPLFFLKGHNGGITH 206
+ K + +A+ P + A + + F D + F + H +
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 207 LE---------FSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR 243
FS L++ D I CW+L+ + F +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQT-RKKIKNFAK 291
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 49.0 bits (118), Expect = 8e-07
Identities = 29/157 (18%), Positives = 47/157 (29%), Gaps = 15/157 (9%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
I T V ++ S +Y G VK++ PG +
Sbjct: 34 IGPGIPRHARQINTLNHGEVV------CAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP 87
Query: 149 SRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGL--FSDSDGRPLFFLKGHNGGI 204
L R N + + + P D +G + + + + R L
Sbjct: 88 VSQLDCLNRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144
Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
L S + + FS D I WDL N ++ F
Sbjct: 145 YALAISPDSKVCFSCCS-DGNIAVWDLHN-QTLVRQF 179
Score = 49.0 bits (118), Expect = 8e-07
Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 41/229 (17%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+ +WD K+ + ++ + S DG + G E + I+ P
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG--GEASTLSIWDLAAPTP 131
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
A+AI PD +C I ++ + + +GH
Sbjct: 132 RI----KAE-LTSSAPACYALAI---SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183
Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI-LHTFPRQVSTNQRVYF--DLTSC 258
G + ++ S++G L++G D + WDLR + H F Q+ + + +
Sbjct: 184 DGASCIDISNDGTKLWTGGL-DNTVRSWDLREGRQLQQHDFTSQIFS---LGYCPT---- 235
Query: 259 SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
+L G + ++ + +VN + Y+ H+ C +
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPD-------------KYQLHLHESCVLSL 271
Score = 34.0 bits (79), Expect = 0.048
Identities = 37/235 (15%), Positives = 68/235 (28%), Gaps = 49/235 (20%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
PDG L+ + L +W + P++ L
Sbjct: 107 PDGCTLIVGGEASTLS------------IWDLAAPTPRIKAELTSSAPAC---------Y 145
Query: 71 S---SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
+ S D I +WD + ++ + D + S DG K+
Sbjct: 146 ALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGA---SCIDISNDGTKL 198
Query: 128 YAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKI 182
+ G V+ + R GR+ + + ++ P A+G S
Sbjct: 199 WTG--GLDNTVRSWDL-REGRQLQQHDFTSQ-----IFSLGYCP---TGEWLAVGMESSN 247
Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
+ + + + L H + L+F+ G S KD + W I
Sbjct: 248 VEVL-HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASI 300
Score = 34.0 bits (79), Expect = 0.053
Identities = 34/212 (16%), Positives = 62/212 (29%), Gaps = 53/212 (25%)
Query: 115 AYSLAFSLDGNKIYAGFLSEVKIFSTD---RPGRECVSRNLKPWFRKNIVSAIAINPVHP 171
AYS + DG F D PG +R + +V A+ I+
Sbjct: 12 AYSFHVTADGQMQPVP-------FPPDALIGPGIPRHARQINTLNHGEVVCAVTIS---N 61
Query: 172 DICALGTY-----SKIIGLFSDSDGRPL-----FFLKGHNGGITHLEFSSNGILLFSGAR 221
+ + ++ S + I + +G L G
Sbjct: 62 P----TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117
Query: 222 KDCEIICWDLRNP-GCILHTFPRQVSTNQRVY---F--DLTSCSNYLLSGNTNGDLSIWN 275
+ WDL P I S+ Y D S S ++G++++W+
Sbjct: 118 -ASTLSIWDLAAPTPRIKAELT---SSAPACYALAISPD----SKVCFSCCSDGNIAVWD 169
Query: 276 VNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
++ Q + +F H D + +
Sbjct: 170 LHN------------QTLVRQFQGHTDGASCI 189
Score = 33.2 bits (77), Expect = 0.092
Identities = 16/150 (10%), Positives = 45/150 (30%), Gaps = 28/150 (18%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+ WD G + +Q+ +SL + G + G E V++
Sbjct: 207 VRSWDLREGRQLQQHDFTSQI------FSLGYCPTGEWLAVG--MESSNVEVL--HVNKP 256
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
+ ++ V ++ ++ + G +F +
Sbjct: 257 DKYQ------LHLHESCVLSLKF---AYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKES 306
Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDL 231
+ + S + + +G+ D + +++
Sbjct: 307 SSVLSCDISVDDKYIVTGSG-DKKATVYEV 335
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 49.2 bits (118), Expect = 8e-07
Identities = 31/233 (13%), Positives = 65/233 (27%), Gaps = 33/233 (14%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
P+ L S D R F E+ + P + + +V
Sbjct: 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC--GWVH--- 206
Query: 70 TSSI----DGFTSYFLCSSMY-APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG 124
+ +G + + + + L D+ AT + ++ F +
Sbjct: 207 --GVCFSANGSR---VAWVSHDSTVCLADADKKMAVATLASET--LPL---LAVTFITES 256
Query: 125 NKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIG 184
+ + AG +F+ D + R ++ + + K
Sbjct: 257 SLVAAGHDCFPVLFTYDSAAGKLSFGG-----RLDVPKQSSQRGLTARERFQNLDKKASS 311
Query: 185 LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF----SGARKDCEIICWDLRN 233
S + G L H ++ + S G + D + WD+R+
Sbjct: 312 EGSAAAGAGLD--SLHKNSVSQISVLSGGKAKCSQFCTTGM-DGGMSIWDVRS 361
Score = 44.9 bits (107), Expect = 2e-05
Identities = 35/259 (13%), Positives = 66/259 (25%), Gaps = 71/259 (27%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
D T + N++ + ++ S + + LK G + W P
Sbjct: 18 KDRTQIAICPNNHEVH------------IYEKSGNKWVQVHELK---EHNGQVTGVDWAP 62
Query: 69 K-----TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD 123
T D ++W G K T + ++ +
Sbjct: 63 DSNRIVTCGTDR-N-----------AYVWTLKGRTWKPTLVILRINRAAR---CVRWAPN 107
Query: 124 GNKIYAGFLSE---VKI--FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD------ 172
K G S + I F + C KP ++ V ++ HP+
Sbjct: 108 EKKFAVG--SGSRVISICYFEQENDWWVCK-HIKKP--IRSTVLSLDW---HPNSVLLAA 159
Query: 173 --------------ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS 218
+ G +F G + + FS+NG +
Sbjct: 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219
Query: 219 GARKDCEIICWDLRNPGCI 237
+ D + D +
Sbjct: 220 VSH-DSTVCLADADKKMAV 237
Score = 44.5 bits (106), Expect = 2e-05
Identities = 40/326 (12%), Positives = 83/326 (25%), Gaps = 72/326 (22%)
Query: 7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVW 66
VD APD ++T D + VW + K + I
Sbjct: 58 VDWAPDSNRIVTCGTDRNAY------------VWTLKGRTWKPTLVIL----RIN-RAAR 100
Query: 67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSL 122
+ + + F S I + K +P V SL +
Sbjct: 101 CVRWAP-NE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR--STVL---SLDWHP 152
Query: 123 DGNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFRK--------------NIVSAIA 165
+ + AG S +IFS PW K V +
Sbjct: 153 NSVLLAAG--SCDFKCRIFSAY-IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 166 INPVHPDICAL--GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD 223
+ + + ++ + L + L + + F + L+ +G D
Sbjct: 210 FSA---NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH--D 264
Query: 224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS 283
C + + + L +F ++ ++ + + + +
Sbjct: 265 CFPVLFTYDSAAGKL-SFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-GSAAAGAGL- 321
Query: 284 SPYEESVQEPLYKFSAHQDCTNGVRW 309
S H++ + +
Sbjct: 322 -------------DSLHKNSVSQISV 334
Score = 33.0 bits (76), Expect = 0.13
Identities = 21/158 (13%), Positives = 46/158 (29%), Gaps = 27/158 (17%)
Query: 161 VSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGILL 216
+S A N D A+ + + ++ S + + LK HNG +T ++++ + +
Sbjct: 11 ISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 67
Query: 217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-----NYLLSGNTNGDL 271
+ D W L+ + R+ G+ + +
Sbjct: 68 VTCGT-DRNAYVWTLKGRTW------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
Query: 272 SIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
SI E + + + W
Sbjct: 121 SICYFEQ--------ENDWWVCKHIKKPIRSTVLSLDW 150
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 48.8 bits (117), Expect = 9e-07
Identities = 32/247 (12%), Positives = 68/247 (27%), Gaps = 47/247 (19%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI------YAGFLSEVKIF--ST 140
I LWD G+ AT++ V + FS GN + I+
Sbjct: 98 IKLWDVSNGQCVATWKSPVPV------KRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151
Query: 141 DRPGRECVSRNLKPWFR------KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL 194
D E + +P + + + + I G I + S+
Sbjct: 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI-IAGHKDGKISKYDVSNNYEY 210
Query: 195 FF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF--PRQVST---- 247
+ H I+ ++FS + + + +D D+ +L + ++T
Sbjct: 211 VDSIDLHEKSISDMQFSPDLTYFITSS-RDTNSFLVDVST-LQVLKKYETDCPLNTAVIT 268
Query: 248 --NQRVY---FDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
+ + + + ++ +E + + H
Sbjct: 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF------------EEEIGRVQGHFG 316
Query: 303 CTNGVRW 309
N V
Sbjct: 317 PLNTVAI 323
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/233 (13%), Positives = 56/233 (24%), Gaps = 66/233 (28%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
G ++ D + + SN ++ ++ + E I D + P
Sbjct: 185 TKGKYIIAGHKDGKIS------------KYDVSNNYEYVD-SIDLHEKSI-SDMQFSP-- 228
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA--YSLAFSLDGNKIY 128
D +YF+ SS L D ++ Y T + + I
Sbjct: 229 ---DL--TYFITSSRDTNSFLVDVSTLQVLKKYE--------TDCPLNTAVITPLKEFII 275
Query: 129 AGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD 188
G E K +T + +
Sbjct: 276 LGGGQEAKDVTTT---------------------------------SANEGKFEARFYHK 302
Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
+ ++GH G + + S G SG D I +
Sbjct: 303 IFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE-DGFIRLHHFEK-SYFDFKY 353
Score = 41.4 bits (98), Expect = 3e-04
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
+S L+ L GH +T ++++ G LLFS + KD W N G
Sbjct: 8 HHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCS-KDSSASVWYSLN-GE 65
Query: 237 ILHTF 241
L T
Sbjct: 66 RLGTL 70
Score = 38.7 bits (91), Expect = 0.002
Identities = 26/219 (11%), Positives = 65/219 (29%), Gaps = 55/219 (25%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
+L+ + +T + ++ +G+ +++ S D
Sbjct: 14 ENLYFQGSHMKAIKLTGHE--RPLT---QVKYNKEGDLLFSC--------SKDS------ 54
Query: 149 SRNLKPWFRKN------------IVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPL 194
+ W+ N + +I ++ C G+ I L+ S+G+ +
Sbjct: 55 --SASVWYSLNGERLGTLDGHTGTIWSIDVDC---FTKYCVTGSADYSIKLWDVSNGQCV 109
Query: 195 FFLKGHNGGITHLEFSSNGILLFSGARK----DCEIICWDLRNPGCILHTFPRQVSTNQR 250
K + +EFS G + I +++ H +
Sbjct: 110 ATWKSP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT-HELTKVSEEPIH 167
Query: 251 VYFDLTSCS-----------NYLLSGNTNGDLSIWNVNT 278
Y+++G+ +G +S ++V+
Sbjct: 168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Score = 37.2 bits (87), Expect = 0.006
Identities = 27/213 (12%), Positives = 67/213 (31%), Gaps = 42/213 (19%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+W S+ GE T + + +S+ G S +K++ G+
Sbjct: 56 ASVWYSLNGERLGTLDGHT--GTI---WSIDVDCFTKYCVTG--SADYSIKLWDVSN-GQ 107
Query: 146 ECVSRNLKPWFRKNIVSAIAINP-------VHPDICALGTYSKIIGLFSDSDGRPLFFLK 198
+ W V + +P + ++ I ++ L
Sbjct: 108 C-----VATWKSPVPVKRVEFSPCGNYFLAILDNV---MKNPGSINIYEIERDSATHELT 159
Query: 199 GHNGG-------------ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
+ T +S+ G + +G + D +I +D+ N + +
Sbjct: 160 KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-DGKISKYDVSNNYEYVDSIDLHE 218
Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
+ + F + Y ++ + + + + +V+T
Sbjct: 219 KSISDMQF--SPDLTYFITSSRDTNSFLVDVST 249
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 48.2 bits (116), Expect = 2e-06
Identities = 61/307 (19%), Positives = 115/307 (37%), Gaps = 64/307 (20%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
P+G L ++S D ++ +W + K T+ + GI D W
Sbjct: 33 PNGEWLASSSADKLIK------------IWGAYDG--KFEKTISGHKLGI-SDVAW---- 73
Query: 71 SSIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
S D L S S + +WD G+ T + ++ + V + F+ N I +
Sbjct: 74 -SSDSNL---LVSASDDKTLKIWDVSSGKCLKTLKGHS--NYV---FCCNFNPQSNLIVS 124
Query: 130 GFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKI 182
G S V+I+ G+ LK + VSA+ N D + +Y +
Sbjct: 125 G--SFDESVRIWDVKT-GKC-----LKT-LPAHSDPVSAVHFNR---DGSLIVSSSYDGL 172
Query: 183 IGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
++ + G+ L + N ++ ++FS NG + + D + WD G L T+
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYSK-GKCLKTY 230
Query: 242 PRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH 300
+ ++ + + +++SG+ + + IWN+ T +E + K H
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT------------KEIVQKLQGH 278
Query: 301 QDCTNGV 307
D
Sbjct: 279 TDVVIST 285
Score = 39.4 bits (93), Expect = 0.001
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 23/153 (15%)
Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF 217
VS++ +P + A + K+I ++ DG+ + GH GI+ + +SS+ LL
Sbjct: 23 TKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 218 SGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
S + D + WD+ + G L T V F SN ++SG+ + + IW
Sbjct: 82 SASD-DKTLKIWDVSS-GKCLKTLKGHSNYVFC---CNF--NPQSNLIVSGSFDESVRIW 134
Query: 275 NVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
+V T + L AH D + V
Sbjct: 135 DVKTG------------KCLKTLPAHSDPVSAV 155
Score = 36.7 bits (86), Expect = 0.008
Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+WD+ G+ T + V + FS +G I A + +K++ + G+
Sbjct: 173 CRIWDTASGQCLKTLIDDDN-PPV---SFVKFSPNGKYILAA--TLDNTLKLWDYSK-GK 225
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
LK + KN I N G+ ++ +++ + L+GH
Sbjct: 226 C-----LKT-YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 202 GGITHLEFSSNGILLFSG-ARKDCEIICWDL 231
+ ++ S D I W
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 34.0 bits (79), Expect = 0.054
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQV 245
+ F L GH ++ ++FS NG L S + D I W + G T +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYD-GKFEKTISGHKLGI 68
Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
S V + +S SN L+S + + L IW+V++
Sbjct: 69 SD---VAW--SSDSNLLVSASDDKTLKIWDVSS 96
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 47.9 bits (115), Expect = 2e-06
Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 34/230 (14%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+ LWD G + + +V S+AFS D +I +G S +K+++T +
Sbjct: 110 LRLWDLTTGTTTRRFVGHT--KDV---LSVAFSSDNRQIVSG--SRDKTIKLWNTLGVCK 162
Query: 146 ECVSRNLKPWFR--KNIVSAIAINP--VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
V VS + +P +P I + K++ +++ ++ + GH
Sbjct: 163 YTVQ------DESHSEWVSCVRFSPNSSNPII-VSCGWDKLVKVWNLANCKLKTNHIGHT 215
Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP--RQVSTNQRVYFDLTSCS 259
G + + S +G L SG KD + + WDL G L+T ++ + F S +
Sbjct: 216 GYLNTVTVSPDGSLCASGG-KDGQAMLWDLNE-GKHLYTLDGGDIINA---LCF---SPN 267
Query: 260 NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
Y L T + IW++ + +E + A + W
Sbjct: 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS---KAEPPQCTSLAW 314
Score = 38.6 bits (91), Expect = 0.002
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 36/128 (28%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
PDG+ + D +W + + YTL +GG D +
Sbjct: 225 PDGSLCASGGKDGQAM------------LWDLNEGKHL--YTL---DGG---DIIN---- 260
Query: 71 SSI----DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVT-HA---YSLAFSL 122
++ + Y+LC++ I +WD G I + SLA+S
Sbjct: 261 -ALCFSPNR---YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316
Query: 123 DGNKIYAG 130
DG ++AG
Sbjct: 317 DGQTLFAG 324
Score = 35.9 bits (84), Expect = 0.012
Identities = 25/143 (17%), Positives = 41/143 (28%), Gaps = 46/143 (32%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
LWD G+ T + + +L FS + + A +KI+ D G+ V
Sbjct: 239 AMLWDLNEGKHLYTLDGGDII------NALCFSPNRYWLCAATGPSIKIW--DLEGKIIV 290
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
L + K T L
Sbjct: 291 DE----------------------------------LKQEVISTSS---KAEPPQCTSLA 313
Query: 209 FSSNGILLFSGARKDCEIICWDL 231
+S++G LF+G D + W +
Sbjct: 314 WSADGQTLFAGYT-DNLVRVWQV 335
Score = 32.9 bits (76), Expect = 0.12
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 26/119 (21%)
Query: 197 LKGHNGGITHLEFSSN-GILLFSGARKDCEIICWDLR----NPGCILHTFP---RQVSTN 248
LKGHNG +T + + ++ S +R D II W L N G VS
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASR-DKTIIMWKLTRDETNYGIPQRALRGHSHFVSD- 91
Query: 249 QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
V +S + LSG+ +G L +W++ T +F H V
Sbjct: 92 --VVI--SSDGQFALSGSWDGTLRLWDLTT------------GTTTRRFVGHTKDVLSV 134
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 47.4 bits (113), Expect = 3e-06
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 197 LKGHNGGITHLEFSSNGILLFSG---ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF 253
KG N + ++ + AR I +++++ L + + F
Sbjct: 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTF 73
Query: 254 DLTSC-SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
TS YL +G+ G+L IWN+ + P+Y H++ N +
Sbjct: 74 GATSLQQRYLATGDFGGNLHIWNLEAP-----------EMPVYSVKGHKEIINAIDG 119
Score = 42.0 bits (99), Expect = 2e-04
Identities = 33/243 (13%), Positives = 64/243 (26%), Gaps = 45/243 (18%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
L T +L +W + Y++K II
Sbjct: 78 LQQRYLATGDFGGNLH------------IWNLEAPEMPV-YSVK-GHKEIINAIDGIGGL 123
Query: 71 S-SIDGFTSYFLCSSMYAPIHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSLDGN 125
+ S + +WD + + N+ D T A+ A++ +
Sbjct: 124 GIGEGA--PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 181
Query: 126 KIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINP--VHPDICALGT 178
+ AG + +K+F D W KN V ++ + + + +
Sbjct: 182 VVCAG--YDNGDIKLF--DLRNMALR------WETNIKNGVCSLEFDRKDISMNKLVATS 231
Query: 179 YSKIIGLF-----SDSDGRPLFFLKGHNGGITHLEFSSNGILLF-SGARKDCEIICWDLR 232
+F + G K H + + LF + + W
Sbjct: 232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYE 290
Query: 233 NPG 235
P
Sbjct: 291 YPI 293
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 60/202 (29%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
I L++ G++K R + + A SL + G
Sbjct: 46 IQLYEIQHGDLKLL-REIEKAKPIKCGTFGATSLQQRYLATG--------DFGG------ 90
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
NL W ++ ++ P++ +KGH I ++
Sbjct: 91 --NLHIW----------------NL--------------EAPEMPVYSVKGHKEIINAID 118
Query: 209 ------FSSNGILLFSGARKDCEIICWDLRNPGCILHTF-PRQVSTNQRVYFDLTSCS-- 259
+ +G+R D + WD R + P Q + + +
Sbjct: 119 GIGGLGIGEGAPEIVTGSR-DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177
Query: 260 ---NYLLSGNTNGDLSIWNVNT 278
+ +G NGD+ ++++
Sbjct: 178 QEERVVCAGYDNGDIKLFDLRN 199
Score = 39.6 bits (93), Expect = 9e-04
Identities = 41/257 (15%), Positives = 73/257 (28%), Gaps = 56/257 (21%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
++T S D ++ VW P Q+ ++ +G D W
Sbjct: 127 EGAPEIVTGSRDGTVK------------VWDP-RQKDDPVANMEPVQGENKRD-CWTVAF 172
Query: 71 S---SIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-- 124
+ + +C+ I L+D ++ N V SL F
Sbjct: 173 GNAYNQEERV---VCAGYDNGDIKLFDLRNMALRWETNIKNGV------CSLEFDRKDIS 223
Query: 125 -NKIYAGFL-SEVKIF--STDRPGRECVSRNLKPWFRKNIVSAIAINP------------ 168
NK+ A L + +F T P + S + K K+ V + P
Sbjct: 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA--HKSTVWQVRHLPQNRELFLTAGGA 281
Query: 169 -------VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGA 220
I S+ I + L + I+ L++S + L +
Sbjct: 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341
Query: 221 RKDCEIICWDLRNPGCI 237
D + + I
Sbjct: 342 F-DQTVRVLIVTKLNKI 357
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 47.3 bits (113), Expect = 4e-06
Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 54/237 (22%)
Query: 89 IHLWDSVGGEIKATYRPYN-QVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPG 144
+ LW+ + A + DEV S + L G KI + +K++ +
Sbjct: 140 LRLWNIQTDTLVAIFGGVEGHRDEV---LSADYDLLGEKIMSC--GMDHSLKLWRIN--S 192
Query: 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGI 204
+ + I + NP + S+ I S H +
Sbjct: 193 KRMM---------NAIKESYDYNP---NKTNRPFISQKIHFPDFSTRD------IHRNYV 234
Query: 205 THLEFSSNGILLFSGARKDCEIICWDL-------------RNPGCILHTFPRQVSTNQRV 251
+ + G L+ S + + I+CW + IL F +
Sbjct: 235 DCVRWL--GDLILSKSC-ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291
Query: 252 YFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308
F + L GN G L +W++ + + + H+ C +R
Sbjct: 292 RFSMDFWQKMLALGNQVGKLYVWDLEVE--------DPHKAKCTTLTHHK-CGAAIR 339
Score = 41.1 bits (97), Expect = 3e-04
Identities = 31/257 (12%), Positives = 84/257 (32%), Gaps = 45/257 (17%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLS-----EVKIFSTDRP 143
+ L++ + Y D + Y+ A++ D N + ++I +
Sbjct: 46 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT- 104
Query: 144 GRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL---FFLK 198
+C+ + N ++ + +P P++ + + L++ + ++
Sbjct: 105 -MQCIKH-----YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158
Query: 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP----------RQVSTN 248
GH + ++ G + S D + W + + +++ + +
Sbjct: 159 GHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFIS 216
Query: 249 QRVYF-DLTS-------------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYE--ESVQE 292
Q+++F D ++ + +LS + + W + ES
Sbjct: 217 QKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276
Query: 293 PLYKFSAHQDCTNGVRW 309
L +F Q +R+
Sbjct: 277 ILGRFDYSQCDIWYMRF 293
Score = 35.7 bits (83), Expect = 0.018
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 22/129 (17%)
Query: 191 GRPLFFLK-GHNGGITHLEF---SSNGILLFSGARKDCEIICWDLRNPGCIL----HTFP 242
+ + LK HN + ++F S G L + ++ + G I +
Sbjct: 7 FKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA 66
Query: 243 RQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH 300
+ D + L + G + I N T + + + H
Sbjct: 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------MQCIKHYVGH 114
Query: 301 QDCTNGVRW 309
+ N +++
Sbjct: 115 GNAINELKF 123
Score = 30.7 bits (70), Expect = 0.65
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 19/128 (14%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
G +L+ S +N + + +PS + + I
Sbjct: 238 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI--------- 288
Query: 70 TS---SIDGFTSYFLCSSMYAPIHLWD----SVGGEIKATYRPYNQVDEVTHAYSLAFSL 122
S+D + + +++WD T + + +FS
Sbjct: 289 WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAI---RQTSFSR 345
Query: 123 DGNKIYAG 130
D + + A
Sbjct: 346 DSSILIAV 353
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 47.0 bits (112), Expect = 4e-06
Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 42/213 (19%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS-LDGNKIYAGFLSE---VKI--FSTDR 142
I LW+ + + +T L F+ L+ N+ YA S ++ F +
Sbjct: 144 IMLWNFGIKDKPTFIKGIGAGGSIT---GLKFNPLNTNQFYAS--SMEGTTRLQDFKGNI 198
Query: 143 PGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGH 200
S + W ++ ++ + G + L + DG+ L+ L+ H
Sbjct: 199 LRVFASSDTINIW-----FCSLDVSA---SSRMVVTGDNVGNVILL-NMDGKELWNLRMH 249
Query: 201 NGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCIL-------HTFPRQVSTNQRVY 252
+TH+ + L + + D + WDLR H V+
Sbjct: 250 KKKVTHVALNPCCDWFLATASV-DQTVKIWDLRQVRGKASFLYSLPHR--HPVNA---AC 303
Query: 253 F--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPS 283
F D LL+ + ++ +++ + + P
Sbjct: 304 FSPD----GARLLTTDQKSEIRVYSASQWDCPL 332
Score = 36.6 bits (85), Expect = 0.008
Identities = 29/209 (13%), Positives = 68/209 (32%), Gaps = 32/209 (15%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA-GFLSE---VKIFSTDRPG 144
L I P++ T SLA+ A G S+ + +++
Sbjct: 101 SFLHTLDSYRILQKAAPFD--RRAT---SLAWHPTHPSTVAVG--SKGGDIMLWNFGIKD 153
Query: 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNG-- 202
+ + + ++ + NP++ + + L D G L +
Sbjct: 154 KPTFIKGIGA---GGSITGLKFNPLNTNQFYASSMEGTTRLQ-DFKGNILRVFASSDTIN 209
Query: 203 -GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYF--DLT 256
L+ S++ ++ +G +I ++ G L ++V+ V
Sbjct: 210 IWFCSLDVSASSRMVVTGDN-VGNVILLNMD--GKELWNLRMHKKKVTH---VALNPC-- 261
Query: 257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
C +L + + + + IW++ +S
Sbjct: 262 -CDWFLATASVDQTVKIWDLRQVRGKASF 289
Score = 35.8 bits (83), Expect = 0.016
Identities = 32/245 (13%), Positives = 74/245 (30%), Gaps = 55/245 (22%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
++T N ++ + + L++ + + T
Sbjct: 219 ASSRMVVTGDNVGNVI------------LLNMDGKELW---NLRMHKKKV---------T 254
Query: 71 S---SIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYN-QVDEVTHAYSLAFSLDGN 125
+ +FL + S+ + +WD KA++ V + FS DG
Sbjct: 255 HVALNPCC--DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV---NAACFSPDGA 309
Query: 126 KIYAGFLSE---VKIFSTD------------RPGRECVSRNLKPWFRKNIVSAIAINPVH 170
++ + ++++S + ++ W + + + P
Sbjct: 310 RLLTT--DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP 367
Query: 171 PDICALGTYSKIIGLFSDSDGRPLF-FLKGHNGGITHL-EFSSNGILLFSGARKDCEIIC 228
+ I +F + G+ + + GI+ L EF+ G L S I+
Sbjct: 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM--GYHILI 425
Query: 229 WDLRN 233
W +
Sbjct: 426 WSQQE 430
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 46.5 bits (111), Expect = 6e-06
Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 41/204 (20%)
Query: 116 YSLAFSLDGNKIYAGFL-SEVKI--FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD 172
Y + A L V + + + V+++ +
Sbjct: 95 YLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDE------STYVASVKWSHDGSF 148
Query: 173 ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR 232
+ ++G + ++ ++ L + GH + L + N +L SG+R I D+R
Sbjct: 149 L-SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR-SGAIHHHDVR 204
Query: 233 NPGCILHTFPRQVSTNQRVYFDLTSCS-------NYLLSGNTNGDLSIWNVNTSNLPSSP 285
+ T + V C L SG + + IW+ +S
Sbjct: 205 IANHQIGTL---QGHSSEV------CGLAWRSDGLQLASGGNDNVVQIWDARSS------ 249
Query: 286 YEESVQEPLYKFSAHQDCTNGVRW 309
P + + H V W
Sbjct: 250 ------IPKFTKTNHNAAVKAVAW 267
Score = 38.4 bits (90), Expect = 0.003
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 16/155 (10%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGREC 147
+++W++ G + A + DE T+ S+ +S DG+ + G V I+ D +
Sbjct: 115 VYVWNADSGSVSALA----ETDESTYVASVKWSHDGSFLSVGLGNGLVDIY--DVESQTK 168
Query: 148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITH 206
+ R + + V ++ N + + G+ S I L+GH+ +
Sbjct: 169 L-RTMA--GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222
Query: 207 LEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
L + S+G+ L SG D + WD R+ T
Sbjct: 223 LAWRSDGLQLASGGN-DNVVQIWDARSSIP-KFTK 255
Score = 33.0 bits (76), Expect = 0.12
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 191 GRPLFFLKGHNGGITHLEFSSNG--ILLFSGARKDCEIICWDLRNPGCILHTFPR--QVS 246
P F HN + + + +L G D +I W+ G ++T QV+
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGSQVT 307
Query: 247 TNQRVYF--DLTSCSNYLLS--GNTNGDLSIWNVNTSNL 281
+ + + S ++S G + +LSIW+ ++S L
Sbjct: 308 S---LIWSPH----SKEIMSTHGFPDNNLSIWSYSSSGL 339
Score = 32.2 bits (74), Expect = 0.23
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
+ H+ + + S +G +L + A D + W + + +
Sbjct: 345 IPAHDTRVLYSALSPDGRILSTAAS-DENLKFWRVYDGDHV 384
Score = 29.9 bits (68), Expect = 1.3
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 35/122 (28%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
DG L + NDN ++ +W + P K + W P
Sbjct: 227 SDGLQLASGGNDNVVQ------------IWDARSSIP-----KFTKTNHNAAVKAVAWCP 269
Query: 69 KTSSIDGFTSYFLCS---SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
S L + +M IH W++ G T +QV SL +S
Sbjct: 270 -----WQ--SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV------TSLIWSPHSK 316
Query: 126 KI 127
+I
Sbjct: 317 EI 318
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 46.4 bits (111), Expect = 6e-06
Identities = 55/325 (16%), Positives = 97/325 (29%), Gaps = 65/325 (20%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
P GT L + D +R +W L + W P
Sbjct: 26 PAGTLLASCGGDRRIR------------IWGTEGDSWICKSVLSEGHQRTVRKVAWSP-- 71
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
G +Y +S A +W + + T + +EV S+A++ GN +
Sbjct: 72 ---CG--NYLASASFDATTCIWKKNQDDFECVTTLEGHE--NEV---KSVAWAPSGNLLA 121
Query: 129 AGFLSE---VKI--FSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTY 179
S V + + ECVS V + HP + A +Y
Sbjct: 122 TC--SRDKSVWVWEVDEEDEY-ECVSV-----LNSHTQDVKHVVW---HPSQELLASASY 170
Query: 180 SKIIGLFSDSDGRPLFF--LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
+ L+ + + + L+GH + L F +G L S + D + W PG
Sbjct: 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD-DRTVRIWRQYLPGNE 229
Query: 238 LHTFPRQVSTNQRVYFDLTSC-------------SNYLLSGNTNGDLSIWNVNTSNLPSS 284
+ + L+ + L + + + ++ + ++ P
Sbjct: 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289
Query: 285 PYEESVQEPLYKFSAHQDCTNGVRW 309
P AH N V W
Sbjct: 290 PTFSLTAHLH---QAHSQDVNCVAW 311
Score = 28.3 bits (64), Expect = 3.3
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 197 LKGHNGGITHLEFS-SNGILLFSGARKDCEIICWDLRNPGCILHTF 241
+ H+ + + ++ LL S + D E+ W + P LH
Sbjct: 299 HQAHSQDVNCVAWNPKEPGLLASCSD-DGEVAFWKYQRPEG-LHHH 342
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 45.7 bits (109), Expect = 2e-05
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 34/159 (21%)
Query: 89 IHLWD-SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPG 144
L D V ++K R ++ S I AG + ++ D
Sbjct: 472 FKLSDLEVSFDLKTPLR--------AKPSYISISPSETYIAAG--DVMGKILLY--DLQS 519
Query: 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD------------GR 192
RE + FR + ++AI+ P ++ + S +
Sbjct: 520 REVKTSRWA--FRTSKINAISWKPAEKGANEEEIEEDLV--ATGSLDTNIFIYSVKRPMK 575
Query: 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231
+ L H G+ +L + + L+ SGA D I W++
Sbjct: 576 IIKALNAHKDGVNNLLWETPSTLVSSGA--DACIKRWNV 612
Score = 44.9 bits (107), Expect = 2e-05
Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 50/226 (22%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I W S + N + SL S + + S +K+
Sbjct: 359 IMEWSSSSMHQDHS----NLI------VSLDNS-KAQEYSSI--SWDDTLKV--NGITKH 403
Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPD-ICALGTYSKIIGLFSDSDGRPLFFLKGH-NGG 203
E S+ + + D A+ T + + G + ++ + G
Sbjct: 404 EFGSQ----------PKVAS---ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450
Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLL 263
L + + L G DL + + S + + Y+
Sbjct: 451 AVSLSQNYVAVGLEEG-NTIQVFKLSDLEVSFDLKTPLRAKPSY---ISI--SPSETYIA 504
Query: 264 SGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
+G+ G + ++++ + E + N + W
Sbjct: 505 AGDVMGKILLYDLQS--------REVKTSRW---AFRTSKINAISW 539
Score = 42.2 bits (100), Expect = 2e-04
Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 30/204 (14%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL---DGNKIYAGFLSE---VKIFSTDR 142
I +D GE + V F+L D K ++++ D
Sbjct: 231 ISCFDGKSGEFLKYIEDDQ--EPV---QGGIFALSWLDSQKFATV--GADATIRVW--DV 281
Query: 143 PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNG 202
+CV + ++ + + + + + L + GHN
Sbjct: 282 TTSKCV-QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340
Query: 203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYL 262
GIT L + L SG+ D I+ W + H+ + + + S +
Sbjct: 341 GITALTVNP----LISGSY-DGRIMEWSSSSMHQD-HS--NLIVS---LDN---SKAQEY 386
Query: 263 LSGNTNGDLSIWNVNTSNLPSSPY 286
S + + L + + S P
Sbjct: 387 SSISWDDTLKVNGITKHEFGSQPK 410
Score = 36.4 bits (85), Expect = 0.012
Identities = 33/310 (10%), Positives = 72/310 (23%), Gaps = 91/310 (29%)
Query: 11 PDGTCLLTNSNDNH-LRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
P + + +R + + G V K
Sbjct: 28 PTTNAIAYPCGKSAFVR------------CLDDGDSKVPPVVQFT----GHGSSVVTTVK 71
Query: 70 TS-SIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA---YSLAFSLDG 124
S LCS + +W + + + + A +++ +G
Sbjct: 72 FSPIKGSQY---LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 128
Query: 125 NKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIG 184
++ E D G
Sbjct: 129 RRLCVV--GE----GRDNFGV--------------------------------------- 143
Query: 185 LFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDL--RNPGCILHTF 241
S G L + GH+ I + + + D ++ + T
Sbjct: 144 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-DGSVVFYQGPPFKFSASDRTH 202
Query: 242 PRQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA 299
+Q S + V F D ++++ ++ +S ++ + E L
Sbjct: 203 HKQGSFVRDVEFSPD---SGEFVITVGSDRKISCFDGKS------------GEFLKYIED 247
Query: 300 HQDCTNGVRW 309
Q+ G +
Sbjct: 248 DQEPVQGGIF 257
Score = 34.5 bits (80), Expect = 0.049
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC-ILHTFP----RQVSTNQRVYF 253
THL + + K + C D + + F V+T V F
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT---VKF 72
Query: 254 DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
S YL SG+ +G + +W +S E F + + W
Sbjct: 73 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE----FQVLAGPISDISW 124
Score = 31.8 bits (73), Expect = 0.37
Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 16/131 (12%)
Query: 114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWF--RKNIVSAIAINPVHP 171
L++ N I + D + + + ++V+ + +P+
Sbjct: 20 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIK- 76
Query: 172 D--ICALGTYSKII--------GLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGA 220
G S + + + + G I+ + + G L G
Sbjct: 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136
Query: 221 RKDCEIICWDL 231
+D +
Sbjct: 137 GRDNFGVFISW 147
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 45.3 bits (108), Expect = 2e-05
Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 26/134 (19%)
Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
+ G L L H I ++++ +G + S + I W++ + G ++ F + +
Sbjct: 136 NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-ENVTILWNVIS-GTVMQHFELKETG 193
Query: 248 NQRVYFDLTS------------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295
+ + S + + G + ++ + + P
Sbjct: 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE------------KTPTG 241
Query: 296 KFSAHQDCTNGVRW 309
K H + + +
Sbjct: 242 KLIGHHGPISVLEF 255
Score = 40.7 bits (96), Expect = 5e-04
Identities = 43/304 (14%), Positives = 86/304 (28%), Gaps = 88/304 (28%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
DG ++T + LR +W + L L I W
Sbjct: 118 HDGNSIVTGVENGELR------------LWNKTGA---LLNVL---NFHRAPIVSVKW-- 157
Query: 69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
+ DG ++ + + LW+ + G + + + + S DG+
Sbjct: 158 ---NKDG--THIISMDVENVTILWNVISGTVMQHFELKE--TGGSSINAENHSGDGSLGV 210
Query: 129 AGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD 188
+ D + V I ++
Sbjct: 211 DV------EWVDD--DK--------------FVI--------------PGPKGAIFVYQI 234
Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF---PRQV 245
++ P L GH+G I+ LEF+ LL S + D + W N G + F + +
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-DGTLRIWHGGN-GNSQNCFYGHSQSI 292
Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
+ + + ++S + +G + +W++ + L
Sbjct: 293 VS---ASW---VGDDKVISCSMDGSVRLWSLKQN------------TLLALSIVDGVPIF 334
Query: 306 GVRW 309
R
Sbjct: 335 AGRI 338
Score = 40.7 bits (96), Expect = 5e-04
Identities = 26/243 (10%), Positives = 63/243 (25%), Gaps = 44/243 (18%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPK 69
DGT +++ +N +++ S + +G + D W
Sbjct: 159 KDGTHIISMDVENVTILWNVISG-TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217
Query: 70 ----TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
G I ++ ++ + L F+
Sbjct: 218 DKFVIPGPKG-A-----------IFVYQITEKTPTGKLIGHH--GPI---SVLEFNDTNK 260
Query: 126 KIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGT 178
+ + S+ ++I+ + N + F + + + D + +
Sbjct: 261 LLLSA--SDDGTLRIWHGG-------NGNSQNCFYGHSQSIVSASW---VGDDKV-ISCS 307
Query: 179 YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
+ L+S L I S +G D ++ +DL+
Sbjct: 308 MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM-DGQVNVYDLKKLNSKS 366
Query: 239 HTF 241
+
Sbjct: 367 RSL 369
Score = 31.1 bits (71), Expect = 0.46
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 15/121 (12%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+ LW + A + ++ S DG K V ++ +
Sbjct: 312 VRLWSLKQNTLLALSIVDG--VPI---FAGRISQDGQKYAVA--FMDGQVNVYDLKK--L 362
Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGI 204
SR+L R I++ + I + I L + G + G +
Sbjct: 363 NSKSRSLY-GNRDGILNPLPIPLYASYQSS-QDNDYIFDLSWNCAGNKISVAYSLQEGSV 420
Query: 205 T 205
Sbjct: 421 V 421
Score = 30.3 bits (69), Expect = 0.84
Identities = 20/162 (12%), Positives = 47/162 (29%), Gaps = 28/162 (17%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+ +W G + + ++ + S ++ D K+ + S V+++S +
Sbjct: 271 LRIWHGGNGNSQNCFYGHS--QSI---VSASWVGDD-KVISC--SMDGSVRLWSLKQ--N 320
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFF-LKGH 200
++ + A I D A+ + ++ L G+
Sbjct: 321 TLLAL-----SIVDGVPIFAGRI---SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGN 372
Query: 201 NGGITHLEFSSNGILLFSGARKDCEI-ICWDLRNPGCILHTF 241
GI + S D + W+ I +
Sbjct: 373 RDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAY 413
Score = 29.5 bits (67), Expect = 1.8
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 23/115 (20%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYF 253
+T L +S +G + +G + E+ W+ G +L+ + + V +
Sbjct: 104 SGKTTNQVTCLAWSHDGNSIVTGVE-NGELRLWNKT--GALLNVLNFHRAPIVS---VKW 157
Query: 254 DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308
+++S + +WNV + + F + + +
Sbjct: 158 --NKDGTHIISMDVENVTILWNVIS------------GTVMQHFELKETGGSSIN 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 45/296 (15%), Positives = 94/296 (31%), Gaps = 79/296 (26%)
Query: 37 KSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSI--DGFTSYFLCSSMYAPIHLWDS 94
+ VW ++ K Y I + I+ + P +I G + Y+ + ++++
Sbjct: 1643 QDVWNRADNHFKDTYGFSILD--IVINN---PVNLTIHFGGEKGKRI-RENYSAM-IFET 1695
Query: 95 VGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-------AGFLSEVKIFSTDRPGREC 147
+ T + + +++E + +Y+ F + + A L E F
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQFTQPALTLMEKAAF--------- 1744
Query: 148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII---GLFSDSDGRPLFFLKGHNGGI 204
+LK + A H LG Y+ + + S + F +G
Sbjct: 1745 --EDLKSKGLIPADATFA---GHS----LGEYAALASLADVMSIESLVEVVFYRG----- 1790
Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV----------STNQRV--- 251
+ R + +I NPG + +F ++ T V
Sbjct: 1791 ---MTMQVAVPRDELGRSNYGMI---AINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 252 -YFDLTSCSN--YLLSGNTNG---------DLSIWNVNTSNLPSSPYEESVQEPLY 295
Y + N Y+ +G+ + + ++ L S E V+ L+
Sbjct: 1845 NY----NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 35.4 bits (81), Expect = 0.029
Identities = 53/352 (15%), Positives = 99/352 (28%), Gaps = 124/352 (35%)
Query: 17 LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF 76
L++ + H +P+ + S + + N L G D + ++
Sbjct: 11 LSHGSLEH--VLLVPTASF----FIASQLQEQFNKILPEPTEGFAADD----EPTTPAEL 60
Query: 77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQV-----DEVTHAYSLAFSLDGNKIYAGF 131
FL ++ V E + ++QV E + Y L+GN I+A
Sbjct: 61 VGKFLG-------YVSSLV--E-PSKVGQFDQVLNLCLTEFENCY-----LEGNDIHA-L 104
Query: 132 LSEVKIFSTDRPGRECVSRN-LKPWFRKNIVSAIAINPVHPDICAL------GTYSKIIG 184
++ + ++ +K + I++ + AL G ++++
Sbjct: 105 AAK---LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS--ALFRAVGEGN-AQLVA 158
Query: 185 LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD-LRN-----PGCI- 237
+F GG G D ++ LR+ +
Sbjct: 159 IF---------------GG--------------QGNTDDY----FEELRDLYQTYHVLVG 185
Query: 238 ---------LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-DLSIWNVNTSNLPSSPYE 287
L R ++V+ T G ++ W N SN P Y
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVF--------------TQGLNILEWLENPSNTPDKDYL 231
Query: 288 ES--VQEPL--------YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI 329
S + PL Y +A G R L S +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAK---LLGF---TPGELRSYLKGATGHSQGL 277
Score = 34.3 bits (78), Expect = 0.064
Identities = 44/249 (17%), Positives = 71/249 (28%), Gaps = 99/249 (39%)
Query: 2 DIEEDVDEA----PDGTCL---LTNSNDN---------------HLRTFDLPSELHCKSV 39
+++ V++ P G + L N N LR PS L +
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 40 WRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEI 99
P ++R K+K F++ FL + +P H S
Sbjct: 408 --PFSER-------KLK-------------------FSNRFL--PVASPFH---S----- 429
Query: 100 KATYRPYNQ--VDEV-THAYSLAFSLDGNKIYAGFLSEVKI--FSTDRPGRECVSRNLKP 154
D + S + +++I + T G + R L
Sbjct: 430 -----HLLVPASDLINKDLVKNNVSFNA--------KDIQIPVYDT-FDGSDL--RVLSG 473
Query: 155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN-- 212
+ IV I PV + + I+ F G P G G+ L N
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHIL-DF----G-P-----GGASGLGVL-THRNKD 521
Query: 213 GILLFSGAR 221
G +G R
Sbjct: 522 G----TGVR 526
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 44.8 bits (107), Expect = 2e-05
Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 23/160 (14%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+ +WDS + V + A++ GN + G I+ + R
Sbjct: 79 LIIWDSYTTNKVHAIPLRS--SWV---MTCAYAPSGNYVACG--GLDNICSIY--NLKTR 129
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
E R + +S D I + L+ G+ GH
Sbjct: 130 EGNVRVSRE-LAGHTGYLSCCRF---LDDNQI-VTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
G + L + + L SGA D WD+R C TF
Sbjct: 185 GDVMSLSLAPDTRLFVSGAC-DASAKLWDVREGMCR-QTF 222
Score = 41.0 bits (97), Expect = 3e-04
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVS 246
R L+GH I + + ++ LL S ++ D ++I WD +H P V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQ-DGKLIIWDSYT-TNKVHAIPLRSSWVM 101
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
T + NY+ G + SI+N+ T E + + H +
Sbjct: 102 T---CAY--APSGNYVACGGLDNICSIYNLKT--------REGNVRVSRELAGHTGYLSC 148
Query: 307 VRW 309
R+
Sbjct: 149 CRF 151
Score = 40.2 bits (95), Expect = 5e-04
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 24/125 (19%)
Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQ 249
+G GH I + F NG +G+ D +DLR L T+
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSD-DATCRLFDLRA-DQELMTYSHDNIIC- 271
Query: 250 RVYFDLTSCS-----NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT 304
+TS S LL+G + + ++W+ + + + H +
Sbjct: 272 ----GITSVSFSKSGRLLLAGYDDFNCNVWDALKA------------DRAGVLAGHDNRV 315
Query: 305 NGVRW 309
+ +
Sbjct: 316 SCLGV 320
Score = 40.2 bits (95), Expect = 5e-04
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 51/142 (35%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
L+D + TY N + +T S++FS G + AG D
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT---SVSFSKSGRLLLAG--------YDDF------ 292
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
N W D L GH+ ++ L
Sbjct: 293 --NCNVW----------------DA---------------LKADRAGVLAGHDNRVSCLG 319
Query: 209 FSSNGILLFSGARKDCEIICWD 230
+ +G+ + +G+ D + W+
Sbjct: 320 VTDDGMAVATGS-WDSFLKIWN 340
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 45.1 bits (107), Expect = 2e-05
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 20/143 (13%)
Query: 158 KNIVSAIAINPVHPDICALGTYSKII-------GLFSDSDGRPLFFLKGHNGGITHLEFS 210
V IA P + ++ A G+ + G P+ L+GH + + +
Sbjct: 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 211 SNGI-LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-----NYLLS 264
+L S D I+ WD+ G + T V + + S + +
Sbjct: 141 PTAQNVLLSAGC-DNVILVWDVGT-GAAVLTLGPDVHPDT-----IYSVDWSRDGALICT 193
Query: 265 GNTNGDLSIWNVNTSNLPSSPYE 287
+ + + + +
Sbjct: 194 SCRDKRVRVIEPRKGTVVAEKDR 216
Score = 44.3 bits (105), Expect = 4e-05
Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 32/224 (14%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I +WD G T P D + YS+ +S DG I V++ +
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTI---YSVDWSRDGALICTS--CRDKRVRVI--EPRKG 208
Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYS---KIIGLFSDSDGRPL--FFLK 198
V+ +P V A+ + I G + + L+
Sbjct: 209 TVVAEKDRPHEGTRPVHAV----FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264
Query: 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP-RQVSTNQR-VYFDLT 256
+ G+ F + +++ + D I +++ + LH +QR + +
Sbjct: 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM-- 322
Query: 257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSPY-----EESVQEPLY 295
L N + ++ + QE LY
Sbjct: 323 --PKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLY 364
Score = 37.7 bits (88), Expect = 0.004
Identities = 39/251 (15%), Positives = 62/251 (24%), Gaps = 80/251 (31%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
DG + T+ D +R + RP EG V+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH-------------EGTRPVHAVFVS-- 230
Query: 71 SSIDG--FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
+G T+ F S + LWD+ E + + + V F D N +Y
Sbjct: 231 ---EGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQELDTSSGVL---LPFFDPDTNIVY 283
Query: 129 AGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD 188
G I F
Sbjct: 284 LC----------------------------------------------GKGDSSIRYFEI 297
Query: 189 SDGRPLF-FLKGHNGGITH--LEFSSNGILLFSGARKDCEII-CWDLRNPGC--ILHTFP 242
+ P +L + + + + L + CEI + L C I T P
Sbjct: 298 TSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK----CEIARFYKLHERKCEPIAMTVP 353
Query: 243 RQVSTNQRVYF 253
R+ Q +
Sbjct: 354 RKSDLFQEDLY 364
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 44.5 bits (106), Expect = 2e-05
Identities = 35/318 (11%), Positives = 89/318 (27%), Gaps = 76/318 (23%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPS-------ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYD 63
D ++++S D + +D + + C V Y
Sbjct: 74 KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM------------------ACAY- 114
Query: 64 YVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA-YSLAFSL 122
+ G C + ++ + + V T+ + +F+
Sbjct: 115 --------APSG--CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 164
Query: 123 DGNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHP-DICAL 176
+I S ++ + + + F V + + P +
Sbjct: 165 SDMQILTA--SGDGTCALWDVES--GQLLQS-----FHGHGADVLCLDLAPSETGNTFVS 215
Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
G K ++ G+ + + H + + + +G SG+ D +DLR
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD-DATCRLYDLRA-DR 273
Query: 237 ILHTFPRQVSTNQRVYFDLTSCS-----NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ 291
+ + ++ +S L +G + +++W+V
Sbjct: 274 EVAIYSKESIIF-----GASSVDFSLSGRLLFAGYNDYTINVWDVLK------------G 316
Query: 292 EPLYKFSAHQDCTNGVRW 309
+ H++ + +R
Sbjct: 317 SRVSILFGHENRVSTLRV 334
Score = 41.4 bits (98), Expect = 3e-04
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 16/137 (11%)
Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235
L ++ + + LKGH + +++ + + S ++ D ++I WD
Sbjct: 39 LHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQ-DGKVIVWDSFT-T 96
Query: 236 CILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE 292
H V + + G + S++ + E++
Sbjct: 97 NKEHAVTMPCTWVMA---CAY--APSGCAIACGGLDNKCSVYPLTFDK------NENMAA 145
Query: 293 PLYKFSAHQDCTNGVRW 309
+ H + + +
Sbjct: 146 KKKSVAMHTNYLSACSF 162
Score = 37.9 bits (89), Expect = 0.003
Identities = 23/131 (17%), Positives = 36/131 (27%), Gaps = 50/131 (38%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
L+D A Y + + + S+ FSL G ++AG D
Sbjct: 264 CRLYDLRADREVAIYSKESIIFGAS---SVDFSLSGRLLFAG--------YNDY------ 306
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
+ W D+ G + L GH ++ L
Sbjct: 307 --TINVW----------------DV---------------LKGSRVSILFGHENRVSTLR 333
Query: 209 FSSNGILLFSG 219
S +G SG
Sbjct: 334 VSPDGTAFCSG 344
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 44.6 bits (106), Expect = 3e-05
Identities = 54/268 (20%), Positives = 99/268 (36%), Gaps = 68/268 (25%)
Query: 72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF 131
G + + S + +W +V G+ T + V +S N I +G
Sbjct: 126 QFCG--NRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGV---WSSQMR--DNIIISG- 175
Query: 132 LSEVKIFSTDRPGR-------ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKI 182
STDR + EC+ + V + + H G+
Sbjct: 176 -------STDRTLKVWNAETGECIHT-----LYGHTSTVRCMHL---HEKRVVSGSRDAT 220
Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
+ ++ G+ L L GH + +++ +G + SGA D + WD C LHT
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-DFMVKVWDPETETC-LHTLQ 276
Query: 243 ---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA 299
+V + + FD +++SG+ + + +W+V T ++ +
Sbjct: 277 GHTNRVYS---LQFD----GIHVVSGSLDTSIRVWDVETG------------NCIHTLTG 317
Query: 300 HQDCTNGVRWKHHKFERDLLV---ADAT 324
HQ T+G+ K ++LV AD+T
Sbjct: 318 HQSLTSGMELKD-----NILVSGNADST 340
Score = 41.1 bits (97), Expect = 4e-04
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 23/148 (15%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
V + G Y ++ ++ L L+GH + L+F +GI + SG+
Sbjct: 242 VRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS 296
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
D I WD+ C +HT S + N L+SGN + + IW++ T
Sbjct: 297 L-DTSIRVWDVETGNC-IHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKT-- 348
Query: 281 LPSSPYEESVQEPLYKFSAHQDCTNGVR 308
+ L + V
Sbjct: 349 ----------GQCLQTLQGPNKHQSAVT 366
Score = 40.7 bits (96), Expect = 4e-04
Identities = 36/198 (18%), Positives = 76/198 (38%), Gaps = 35/198 (17%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+ +WD G+ + V + + DG ++ +G + VK++ +
Sbjct: 221 LRVWDIETGQCLHVLMGHV--AAV---RCVQY--DGRRVVSG--AYDFMVKVWDPET--E 269
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG 203
C+ + N V ++ + +H G+ I ++ G + L GH
Sbjct: 270 TCLHT-----LQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY---FDLTSCSN 260
+ +E N +L SG D + WD++ G L T V F+ N
Sbjct: 322 TSGMELKDN--ILVSGNA-DSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFN----KN 373
Query: 261 YLLSGNTNGDLSIWNVNT 278
++++ + +G + +W++ T
Sbjct: 374 FVITSSDDGTVKLWDLKT 391
Score = 32.6 bits (75), Expect = 0.16
Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 25/154 (16%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I +WD G T + + N + +G + VKI+
Sbjct: 301 IRVWDVETGNCIHTLTGHQ--SLT---SGMELK--DNILVSG--NADSTVKIWDIKT--G 349
Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-----KGH 200
+C+ P ++ V+ + N + + + L+ G + L G
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 406
Query: 201 NGGITHLEFSSNGILLFSGAR---KDCEIICWDL 231
G + + S+ ++ G+R ++ +++ D
Sbjct: 407 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 44.7 bits (106), Expect = 3e-05
Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 49/244 (20%)
Query: 11 PD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWY 67
D +++ S D + +W+ + + G + D V
Sbjct: 392 IDNADIIVSASRDKSII------------LWKLTKDDKAYGVAQRRLTGHSHFVEDVVL- 438
Query: 68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
S DG + L S + LWD G + + +V S+AFSLD +I
Sbjct: 439 ----SSDG--QFALSGSWDGELRLWDLAAGVSTRRFVGHT--KDV---LSVAFSLDNRQI 487
Query: 128 YAGFLSEVKIFSTDRPGR------ECVSRNLKPWFR--KNIVSAIAINP--VHPDICALG 177
+ S DR + EC + ++ VS + +P + P I
Sbjct: 488 VSA--------SRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTI-VSA 537
Query: 178 TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
++ K + +++ S+ + L GH G ++ + S +G L SG KD ++ WDL G
Sbjct: 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLAE-GKK 595
Query: 238 LHTF 241
L++
Sbjct: 596 LYSL 599
Score = 43.9 bits (104), Expect = 5e-05
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
+ ++ GEI + +++ + + N + + + +
Sbjct: 319 ATMENAQKGEIMPN------IPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGL 372
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL-----FSDSDGRPLFFLKGHNGG 203
++V+AIA + DI + K I L + G L GH+
Sbjct: 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF 432
Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
+ + SS+G SG+ D E+ WDL G F
Sbjct: 433 VEDVVLSSDGQFALSGSW-DGELRLWDLAA-GVSTRRF 468
Score = 41.2 bits (97), Expect = 4e-04
Identities = 27/199 (13%), Positives = 55/199 (27%), Gaps = 29/199 (14%)
Query: 117 SLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL 176
++A ++ + + E + N+ A+ +
Sbjct: 301 AVALKSYEEELAKD--PRIAATMENAQKGEIM-PNIPQMSAFWYAVRTAVINAASGRQTV 357
Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNP- 234
+ + ++ H +T + N ++ S +R D II W L
Sbjct: 358 DAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASR-DKSIILWKLTKDD 416
Query: 235 ---GCILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEE 288
G V V +S + LSG+ +G+L +W++
Sbjct: 417 KAYGVAQRRLTGHSHFVED---VVL--SSDGQFALSGSWDGELRLWDLAA---------- 461
Query: 289 SVQEPLYKFSAHQDCTNGV 307
+F H V
Sbjct: 462 --GVSTRRFVGHTKDVLSV 478
Score = 36.6 bits (85), Expect = 0.010
Identities = 44/253 (17%), Positives = 75/253 (29%), Gaps = 75/253 (29%)
Query: 11 PDGTCLLTNSNDN----------HLRTFDLPSELHCKSVWR----PSNQRPKL-----NY 51
D +++ S D T E H V P+ +P + +
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 52 TLKI------KEGGIIY---DYVWYPKTSSI----DGFTSYFLCSSMYAPIHLWDSVGGE 98
T+K+ K + YV ++ DG S + LWD G+
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVS-----TVAVSPDG--SLCASGGKDGVVLLWDLAEGK 594
Query: 99 IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRK 158
+ + + ++L FS + + A +KI+ D + V +LK +
Sbjct: 595 KLYSLEANSVI------HALCFSPNRYWLCAATEHGIKIW--DLESKSIV-EDLKVDLK- 644
Query: 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS 218
+D K T L +S++G LFS
Sbjct: 645 -------------------------AEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679
Query: 219 GARKDCEIICWDL 231
G D I W +
Sbjct: 680 GYT-DGVIRVWGI 691
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 43.7 bits (104), Expect = 4e-05
Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 48/242 (19%)
Query: 12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYPK 69
LL+ S D L W+ + K ++ +G I+ D
Sbjct: 29 QPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVRSFKGHSHIVQDCTL--- 73
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ DG +Y L +S + LWD GE + + +V S+ + I +
Sbjct: 74 --TADG--AYALSASWDKTLRLWDVATGETYQRFVGHK--SDV---MSVDIDKKASMIIS 124
Query: 130 GFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDIC-----ALGTY 179
G S +K+++ G+ L + VS + + P
Sbjct: 125 G--SRDKTIKVWTIK--GQC-----LAT-LLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 180 SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH 239
K++ ++ + + GHN I L S +G L+ S KD EI+ W+L ++
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAA-KKAMY 232
Query: 240 TF 241
T
Sbjct: 233 TL 234
Score = 40.2 bits (95), Expect = 6e-04
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 159 NIVSAIAINPVHPDICALGTYSKII-----GLFSDSDGRPLFFLKGHNGGITHLEFSSNG 213
V+++A + P++ + K + G P+ KGH+ + +++G
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 214 ILLFSGARKDCEIICWDLRNPGCILHTF 241
S + D + WD+ G F
Sbjct: 78 AYALSASW-DKTLRLWDVAT-GETYQRF 103
Score = 39.4 bits (93), Expect = 0.001
Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 13/129 (10%)
Query: 159 NIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILL 216
+ ++ + +P D + A I L++ + + ++ L + + L FS N L
Sbjct: 197 SNINTLTASP---DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWL 252
Query: 217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-----NYLLSGNTNGDL 271
+ I + L + P ++ S + L +G T+ +
Sbjct: 253 AAAT--ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 272 SIWNVNTSN 280
+W V T+N
Sbjct: 311 RVWQVMTAN 319
Score = 39.0 bits (92), Expect = 0.001
Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 35/127 (27%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
PDGT + + D + +W + ++ YTL D V+
Sbjct: 206 PDGTLIASAGKDGEIM------------LWNLAAKKAM--YTL---SAQ---DEVF---- 241
Query: 71 SSI----DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA---YSLAFSLD 123
S+ + Y+L ++ I ++ + RP SLA+S D
Sbjct: 242 -SLAFSPNR---YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 124 GNKIYAG 130
G ++AG
Sbjct: 298 GQTLFAG 304
Score = 34.0 bits (79), Expect = 0.056
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 26/119 (21%)
Query: 197 LKGHNGGITHLEFS-SNGILLFSGARKDCEIICWDLRNP----GCILHTF---PRQVSTN 248
L+GHNG +T L S LL S +R D +I W L G + +F V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASR-DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD- 70
Query: 249 QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
T+ Y LS + + L +W+V T E +F H+ V
Sbjct: 71 --CTL--TADGAYALSASWDKTLRLWDVAT------------GETYQRFVGHKSDVMSV 113
Score = 32.1 bits (74), Expect = 0.24
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-----KDCEIICWDLRNPGCILHTFP 242
G+ L L GHN ++ + N D + W+L I F
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFI 193
Query: 243 ---RQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNT 278
++T + D + S +G++ +WN+
Sbjct: 194 GHNSNINT---LTASPD----GTLIASAGKDGEIMLWNLAA 227
Score = 31.7 bits (73), Expect = 0.27
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 27/125 (21%)
Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP------RQ 244
G GH + ++ ++ SG+R D I W ++ G L T Q
Sbjct: 97 GETYQRFVGHKSDVMSVDIDKKASMIISGSR-DKTIKVWTIK--GQCLATLLGHNDWVSQ 153
Query: 245 V--STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
V N++ D S ++S + + WN+N + F H
Sbjct: 154 VRVVPNEKADDD----SVTIISAGNDKMVKAWNLNQ------------FQIEADFIGHNS 197
Query: 303 CTNGV 307
N +
Sbjct: 198 NINTL 202
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 43.4 bits (103), Expect = 7e-05
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 42/232 (18%)
Query: 89 IHLWDSVGGEIKATYRPYNQV----DEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTD 141
+ +V + V V F G+ +Y +F +
Sbjct: 29 DEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKA--RLDGHDFLF--N 84
Query: 142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
R+ K R + + LGT I + + + H
Sbjct: 85 TIIRDG----SKMLKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHV 139
Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYF--DLT 256
IT L+F +G L S ++ D ++ W +++ G T V+ +
Sbjct: 140 SEITKLKFFPSGEALISSSQ-DMQLKIWSVKD-GSNPRTLIGHRATVTD---IAIIDR-- 192
Query: 257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308
+LS + +G + +W T ++ F+ ++ +GV
Sbjct: 193 --GRNVLSASLDGTIRLWECGT------------GTTIHTFNRKENPHDGVN 230
Score = 42.6 bits (101), Expect = 1e-04
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
R L + +LEF + G + +G I ++ + + +
Sbjct: 234 LFVGTDRQL--HEISTSKKNNLEFGTYGKYVIAGHV-SGVITVHNVFSKEQTIQLPSKFT 290
Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
+ + D + +NY+ +G NG L+ W++ + E V E L N
Sbjct: 291 CSCNSLTVDGNN-ANYIYAGYENGMLAQWDLRSP-------ECPVGEFL---INEGTPIN 339
Query: 306 GV 307
V
Sbjct: 340 NV 341
Score = 41.8 bits (99), Expect = 2e-04
Identities = 36/280 (12%), Positives = 82/280 (29%), Gaps = 56/280 (20%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
D +L +++N + +V + N+ + + G+
Sbjct: 15 YDFKAVLEENDENDDEFYI--------NVDKNLNEIKEHKIVVLGNSRGV------DAGK 60
Query: 71 S---SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
G S+ + + L++++ + + + L +
Sbjct: 61 GNTFEKVG--SHLYKARLDGHDFLFNTIIRDGSKMLKRADYT------AVDTAKLQMRRF 112
Query: 128 YAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTY--- 179
G + +K+ D + + ++ + P G
Sbjct: 113 ILG--TTEGDIKVL--DSNFNLQREI-----DQAHVSEITKLKFFP---S----GEALIS 156
Query: 180 -S--KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
S + ++S DG L GH +T + G + S + D I W+ G
Sbjct: 157 SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL-DGTIRLWECGT-GT 214
Query: 237 ILHTFPRQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIW 274
+HTF R+ + + V L +T+ ++
Sbjct: 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254
Score = 32.6 bits (75), Expect = 0.18
Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 64/259 (24%)
Query: 11 PDGTCLLTNSNDN-----------HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGG 59
G +L+ S D + TF+ E V + +I
Sbjct: 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFN-RKENPHDGVNSIALFVGTDRQLHEISTSK 249
Query: 60 IIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV-GGEIKATYRPYNQVDEVTHAYSL 118
+ + G Y + + I + + + + SL
Sbjct: 250 KN--NLEF----GTYG--KYVIAGHVSGVITVHNVFSKEQTIQLPSKFT--CSC---NSL 296
Query: 119 AFSL-DGNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD 172
+ N IYAG E + + EC + + ++ +
Sbjct: 297 TVDGNNANYIYAG--YENGMLAQWDLRS--PECP---VGEFLINEGTPINNVYF---AAG 346
Query: 173 -------------ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS----NGIL 215
+ + FL ++ ++ + S NG +
Sbjct: 347 ALFVSSGFDTSIKLDIISDPESERPAIEFET---PTFLVSNDDAVSQFCYVSDDESNGEV 403
Query: 216 LFSGARKDCEIICWDLRNP 234
L G C + ++L NP
Sbjct: 404 LEVGKNNFCAL--YNLSNP 420
Score = 28.4 bits (64), Expect = 3.4
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 196 FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD- 254
FL I ++ F++ + + S D I + +P + V D
Sbjct: 330 FLINEGTPINNVYFAAGALFV-SSGF-DTSIKLDIISDPES-ERPAIEFETPTFLVSNDD 386
Query: 255 ----LTSCSN-----YLLSGNTNGDLSIWNV 276
S+ +L N +++N+
Sbjct: 387 AVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 43.2 bits (102), Expect = 9e-05
Identities = 46/282 (16%), Positives = 98/282 (34%), Gaps = 59/282 (20%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
P +LT + +W Q ++++ E +
Sbjct: 23 PTEPWVLTTLYSGRVE------------IWNYETQ--VEVRSIQVTETPV---------R 59
Query: 71 S---SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
+ ++ + S I +++ GE + + D + S+A +
Sbjct: 60 AGKFIARK--NWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYI---RSIAVHPTKPYV 112
Query: 128 YAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIG 184
+G S+ VK+++ + + + + ++ V +A NP P A G + +
Sbjct: 113 LSG--SDDLTVKLWNWEN--NWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 185 LFSDSDGRPLF-FLKGHNGGITHLEFSS--NGILLFSGARKDCEIICWDLRNPGCILHTF 241
++S P F G G+ ++++ + + + + D I WD + + T
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQT-KSCVATL 224
Query: 242 ---PRQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNT 278
VS F L ++SG+ +G L IWN +T
Sbjct: 225 EGHMSNVSF---AVFHPTLP----IIISGSEDGTLKIWNSST 259
Score = 40.8 bits (96), Expect = 5e-04
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 16/131 (12%)
Query: 116 YSLAFSLDGNKIYAGFLSE-VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD 172
+ F + S V+I++ + + V + + V A
Sbjct: 17 KGIDFHPTEPWVLTTLYSGRVEIWNYE--TQVEVRS-----IQVTETPVRAGKF---IAR 66
Query: 173 --ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
+G+ I +F+ + G + + H I + + SG+ D + W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DLTVKLWN 125
Query: 231 LRNPGCILHTF 241
N + TF
Sbjct: 126 WENNWALEQTF 136
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN 248
+ L+GH ++ F ++ SG+ D + W+ + T + +
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSST-YKVEKTLNVGLERS 273
Query: 249 QRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
+ T NY+ SG NG ++ ++
Sbjct: 274 WCIATHPTGRKNYIASGFDNG-FTVLSLGN 302
Score = 37.4 bits (87), Expect = 0.007
Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 23/153 (15%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG--NKIYAGFLSEVKIFSTDRPGRE 146
+ +W+S +++ T + + +A G N I +GF + + S
Sbjct: 252 LKIWNSSTYKVEKTLNVGL--ERS---WCIATHPTGRKNYIASGFDNGFTVLSLGN-DEP 305
Query: 147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII-GLFSDSDGRPLFF----LKGHN 201
+S + K + S + A ++ +I G PL L +
Sbjct: 306 TLSLD---PVGKLVWS------GGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD 356
Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNP 234
L S NG + + +I L
Sbjct: 357 VFPQSLAHSPNGRFVTVVGDGEY-VIYTALAWR 388
Score = 36.6 bits (85), Expect = 0.011
Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 26/116 (22%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT 256
+ + ++F + + + W+ + + QV+ V
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLY-SGRVEIWNYET-QVEVRSI--QVTET-PVR---- 59
Query: 257 SCS-----NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
+ N+++ G+ + + ++N NT E + F AH D +
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPDYIRSI 103
Score = 36.2 bits (84), Expect = 0.013
Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 12/126 (9%)
Query: 159 NIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILL 216
+ VS HP I G+ + +++ S + L + G
Sbjct: 229 SNVSFAVF---HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285
Query: 217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276
+ + D L N L ++ + + N S +
Sbjct: 286 YIASGFDNGFTVLSLGNDEPTLSL-----DPVGKLVW--SGGKNAAASDIFTAVIRGNEE 338
Query: 277 NTSNLP 282
+ P
Sbjct: 339 VEQDEP 344
Score = 28.5 bits (64), Expect = 3.9
Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 31/185 (16%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
I +WD AT + V+ F I +G SE +KI+++
Sbjct: 210 IKIWDYQTKSCVATLEGHM--SNVS---FAVFHPTLPIIISG--SEDGTLKIWNSST--Y 260
Query: 146 ECVSRNLKPWFR-KNIVSAIAINPVHPD----ICALGTYSKIIGLFSDSDGRPLFFLKGH 200
+ K IA HP A G + + S + P L
Sbjct: 261 KV----EKTLNVGLERSWCIAT---HPTGRKNYIASGFDNGFT-VLSLGNDEPTLSLDPV 312
Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT-----FPRQVSTNQRVYFDL 255
+ ++ +F+ + E + D FP+ ++ + F +
Sbjct: 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF-V 371
Query: 256 TSCSN 260
T +
Sbjct: 372 TVVGD 376
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 42.6 bits (101), Expect = 1e-04
Identities = 0/213 (0%), Positives = 0/213 (0%), Gaps = 38/213 (17%)
Query: 89 IHLWDSVGGEIKATYRPYNQV-----DEVTHAYSLAFSLDG-NKIYAGFLSEVKIFSTDR 142
+ + + K G
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRY---VDIGIPANNKGKQSIG--------CLFW 180
Query: 143 PGR-------ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFS-DSD 190
+ K A + +
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAK--EQEEEEAALVAPDYGAVAEYAAP 238
Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
+ + A + + +
Sbjct: 239 AADTWGGEWGTDAAAQPAAIPAQAGADWTAA-PAPAAGGWDTA-AAPAPGWEQGSAPVPA 296
Query: 251 VYFDLTSCS-----NYLLSGNTNGDLSIWNVNT 278
Sbjct: 297 AAPTPNWGE 329
Score = 40.2 bits (95), Expect = 6e-04
Identities = 7/138 (5%), Positives = 27/138 (19%), Gaps = 19/138 (13%)
Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
+ G++ + G+ L+ I +E + I+ + + +
Sbjct: 42 VYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPY-GQRAVLKFAQY-TG 99
Query: 237 ILHTFP---RQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ 291
T + + + + ++
Sbjct: 100 AHAIAGRHTPGTFT---NQLQTS----FSEPRLLILTDPRTDHQPIKESALGNI--PTIA 150
Query: 292 EPLYKFSAHQDCTNGVRW 309
+ +
Sbjct: 151 FCD---TDSPMRYVDIGI 165
Score = 40.2 bits (95), Expect = 6e-04
Identities = 7/164 (4%), Positives = 26/164 (15%), Gaps = 19/164 (11%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
L + A + ++ ++ +
Sbjct: 90 AVLKFAQYTGAHAIAGRHT--PGT---FTNQLQTSFSEPRLL--ILTDPRTDHQPIKESA 142
Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-----FFLK 198
+ I I + ++G ++ + + +
Sbjct: 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVM 202
Query: 199 GHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILHTF 241
E + + + P
Sbjct: 203 VDLFFYRDPEEAKEQEEEEAALVA-PDYGAVAEYAAPAADTWGG 245
Score = 38.3 bits (90), Expect = 0.002
Identities = 0/171 (0%), Positives = 0/171 (0%), Gaps = 41/171 (23%)
Query: 89 IHLWD-SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIF--STDR 142
+ + + D A + +
Sbjct: 230 GAVAEYAAPAADTWGGEWGT--DAA---AQPAAIPAQAGADWT--AAPAPAAGGWDTAAA 282
Query: 143 PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-----------G 191
Sbjct: 283 ------------ 330
Query: 192 RPLFFL----KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
Sbjct: 331 - 380
Score = 36.8 bits (86), Expect = 0.007
Identities = 9/239 (3%), Positives = 31/239 (12%), Gaps = 47/239 (19%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
++ G+ + + ++ D A +
Sbjct: 48 DGIYIINLGKTWEKLQLAA--RVI---VAIENPQDIIVQSAR--PYGQRAVLK--FAQYT 98
Query: 146 ECVSRNLKPWF-RKNIVSAIAINPVHPD--ICALGTYSKII-------GLFSDSDGRPLF 195
+ L + + F
Sbjct: 99 GAH----AIAGRHTPGTFTNQLQT---SFSEPRLLILTDPRTDHQPIKESALGNIPTIAF 151
Query: 196 FLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCILHTFPRQVST--NQRVY 252
+ +N G + L+ + +
Sbjct: 152 CDTDSPMRYVDIGIPANNKGKQSIGCL-FWLLARMVLQM-RGTILPGHKWDVMVDLFFYR 209
Query: 253 F-DLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
+ + ++ + D
Sbjct: 210 DPEEAKEQEEEEAALVAPDYGAVAEYAAP-----------AADTWGGEWGTDAAAQPAA 257
Score = 28.7 bits (65), Expect = 2.8
Identities = 2/88 (2%), Positives = 13/88 (14%), Gaps = 11/88 (12%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYF 253
+ + + + + + G R + +
Sbjct: 21 MMLAADVHLGTKNCDFQMER-YVYK-RRTDGIYIINL-GKTWEKLQLAARVIVA---IEN 74
Query: 254 DLTSCSNYLLSGNTNGDLSIWNVNTSNL 281
+ + +
Sbjct: 75 --PQDIIVQSARPYGQRAVLKFAQYTGA 100
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 42.2 bits (100), Expect = 1e-04
Identities = 51/306 (16%), Positives = 90/306 (29%), Gaps = 92/306 (30%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPS-----EL--HCKSVWRPSNQRPKLNYTLKIKEGGIIYD 63
+ ++T ++D +R +D + +L H VW LK GGI+
Sbjct: 130 FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-----------ALKYAHGGILV- 177
Query: 64 YVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD 123
+ S D T + +WD G + +N V + +
Sbjct: 178 ------SGSTDR-T-----------VRVWDIKKGCCTHVFEGHN--STVRCL-DIVEYKN 216
Query: 124 GNKIYAGFLSEVKIFSTDR-------PGRECVSRNLKPWFRKNIVSAIAINP-------- 168
I G S D P + ++ + P
Sbjct: 217 IKYIVTG--------SRDNTLHVWKLPKESS----VPDHGEEHDYPLVFHTPEENPYFVG 264
Query: 169 -----------VHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215
V I G+Y + ++ + + L+ L GH I +
Sbjct: 265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324
Query: 216 LFSGARKDCEIICWDLRNPGCILHTF---PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLS 272
S + D I WDL N G +++T V + +L+S +G +
Sbjct: 325 CISASM-DTTIRIWDLEN-GELMYTLQGHTALVGL---LRLS----DKFLVSAAADGSIR 375
Query: 273 IWNVNT 278
W+ N
Sbjct: 376 GWDAND 381
Score = 33.0 bits (76), Expect = 0.11
Identities = 35/226 (15%), Positives = 63/226 (27%), Gaps = 81/226 (35%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
+ +WD + + D + YS + + + + S D
Sbjct: 292 LIVWDVAQMKCLYILSGHT--DRI---YSTIYDHERKRCISA--------SMD------- 331
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
++ W D+ +G ++ L+GH + L
Sbjct: 332 -TTIRIW----------------DL---------------ENGELMYTLQGHTALVGLLR 359
Query: 209 FSSNGILLFSGARKDCEIICWDLRNPGCIL---HTFPRQVSTNQRVYFDLTSCSNYLLSG 265
S L S A D I WD + HT ++T N L+SG
Sbjct: 360 LSDK--FLVSAAA-DGSIRGWDANDYSRKFSYHHTNLSAITTFY---VS----DNILVSG 409
Query: 266 --NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
N +I+N+ + + V + D V +
Sbjct: 410 SENQ---FNIYNLRSG--------KLVHANI---LKDADQIWSVNF 441
Score = 31.1 bits (71), Expect = 0.47
Identities = 9/85 (10%), Positives = 20/85 (23%), Gaps = 10/85 (11%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYF 253
L + + L + W T V T
Sbjct: 74 LNLKLSQKYPKLSQQDRLRLSFL-ENIFILKNWYNPKFVPQRTTLRGHMTSVIT---CLQ 129
Query: 254 DLTSCSNYLLSGNTNGDLSIWNVNT 278
NY+++G + + +++
Sbjct: 130 ---FEDNYVITGADDKMIRVYDSIN 151
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 42.0 bits (99), Expect = 2e-04
Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 25/234 (10%)
Query: 11 PDGTCLLTNSNDNHLRTFDL-PSELHCKSVWRPSNQRPKLNYTLKIKE-GGIIYDYVWYP 68
P+ L D ++ K R N GG ++ +
Sbjct: 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGF-- 213
Query: 69 KTSSIDGFTSYFLCS-SMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGN 125
S G L + + + E +A + SL ++ +
Sbjct: 214 ---SPSGNA---LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL---RSLLWANESA 264
Query: 126 KIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL 185
+ AG+ + + G R+L K + + +++ +
Sbjct: 265 IVAAGYNYSPILLQGNESGWAHT-RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323
Query: 186 FSDSDGR----PLFFLKG-HNGGIT---HLEFSSNGILLFSGARKDCEIICWDL 231
F + D + + L H I + I F+ + D ++ W L
Sbjct: 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377
Score = 40.1 bits (94), Expect = 7e-04
Identities = 33/265 (12%), Positives = 67/265 (25%), Gaps = 40/265 (15%)
Query: 89 IHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTD 141
I + K RP + SL + + + AG + S
Sbjct: 124 ISVCYFEQENDWWVSKHLKRPLR--STIL---SLDWHPNNVLLAAG--CADRKAYVLSAY 176
Query: 142 RPG----RECVSRNLKPWFRKNIVSAIAINPVH-----PDICALGTYS--KIIGLFSDSD 190
E + F + VH P AL + + S
Sbjct: 177 VRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236
Query: 191 G----RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
R L +K + L +++ ++ +G + I G +
Sbjct: 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGY--NYSPILLQGNESGWAHTRDLD--A 292
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
+ F T + + N+ +S+ + HQ+
Sbjct: 293 GTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLP---TVHQNMIAT 349
Query: 307 VRWKHHKFERDLLVADATCS--GQI 329
+R + + A + G++
Sbjct: 350 LRP--YAGTPGNITAFTSSGTDGRV 372
Score = 39.0 bits (91), Expect = 0.002
Identities = 36/321 (11%), Positives = 74/321 (23%), Gaps = 104/321 (32%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
T +T + N + ++ K T I+ W P
Sbjct: 21 SQRTEFVTTTATNQVE------------LYEQDGNGWKHARTF---SDHDKIVTCVDWAP 65
Query: 69 K-----TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA-YSLAFSL 122
K T S D ++++ T++ + + A + +S
Sbjct: 66 KSNRIVTCSQDR-N-----------AYVYEKRPD---GTWKQTLVLLRLNRAATFVRWSP 110
Query: 123 DGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKI 182
+ +K G S R I++ +
Sbjct: 111 NEDKFAVG--------SGAR--------------------VISVCYFEQE---------- 132
Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI----- 237
+ + I L++ N +LL +G D +
Sbjct: 133 -----NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-DRKAYVLSAYVRDVDAKPEA 186
Query: 238 --------LHTFPRQVSTNQRVYF-DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEE 288
+T + + V+ + N L + ++I + P
Sbjct: 187 SVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP----- 241
Query: 289 SVQEPLYKFSAHQDCTNGVRW 309
L Q + W
Sbjct: 242 ---RALITVKLSQLPLRSLLW 259
Score = 35.9 bits (83), Expect = 0.017
Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 22/181 (12%)
Query: 116 YSLAFSLDGNKI-YAGFLSEVKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD 172
Y AF+ + ++V+++ D G + F IV+ + P
Sbjct: 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART-----FSDHDKIVTCVDW---APK 66
Query: 173 ICALGTYS-----KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEII 227
+ T S + D + L N T + +S N G+ I
Sbjct: 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-ARVIS 125
Query: 228 CWDL---RNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS 284
+ H ST + + + L +G + + + ++ +
Sbjct: 126 VCYFEQENDWWVSKHLKRPLRSTILSLDWH--PNNVLLAAGCADRKAYVLSAYVRDVDAK 183
Query: 285 P 285
P
Sbjct: 184 P 184
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 41.9 bits (99), Expect = 2e-04
Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 36/226 (15%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
+ +WD GE+ T + + V L F + + S+ + ++ P
Sbjct: 195 VRVWDVNTGEMLNTLIHHC--EAV---LHLRF--NNGMMVTC--SKDRSIAVWDMASPTD 245
Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT 205
+ R L + V+ + + + I +++ S + L GH GI
Sbjct: 246 ITLRRVLV--GHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300
Query: 206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCIL----HTFPRQVSTNQRVYFDLTSCSNY 261
L++ L+ SG+ D I WD+ C+ H V + FD +
Sbjct: 301 CLQYR--DRLVVSGSS-DNTIRLWDIECGACLRVLEGHE--ELVRC---IRFD----NKR 348
Query: 262 LLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
++SG +G + +W++ + P +P + L H +
Sbjct: 349 IVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEHSGRVFRL 391
Score = 34.2 bits (79), Expect = 0.055
Identities = 16/102 (15%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
G I ++ + L GH G + L++ + ++ +G+ D + WD+ G
Sbjct: 149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS-DSTVRVWDVNT-GE 204
Query: 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
+L+T + F+ + +++ + + +++W++ +
Sbjct: 205 MLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMAS 242
Score = 33.5 bits (77), Expect = 0.082
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 185 LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
+ + L L H+G + L+F + + S + D I+ WD N P
Sbjct: 369 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS-HDDTILIWDFLNDPA-AQAEP 422
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 39/258 (15%), Positives = 69/258 (26%), Gaps = 80/258 (31%)
Query: 2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLN-YTLKIKEGGI 60
D+ V++ + + ++ + + EL K + R ++ Y +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT---- 458
Query: 61 IYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF 120
+D +D YF + HL ++ +
Sbjct: 459 -FDS-DDLIPPYLDQ---YFYSHIGH---HL---------KNIEHPERMTLFRMVF---- 497
Query: 121 SLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS 180
LD FL E KI R + + A + + L Y
Sbjct: 498 -LDFR-----FL-EQKI-------------------RHDSTAWNASGSILNTLQQLKFYK 531
Query: 181 KIIGLFSDSDGRP-------LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233
I D+D + L FL +L S K +++ L
Sbjct: 532 PYI---CDNDPKYERLVNAILDFLPKIE---ENLICS-----------KYTDLLRIALMA 574
Query: 234 P-GCILHTFPRQVSTNQR 250
I +QV QR
Sbjct: 575 EDEAIFEEAHKQV---QR 589
Score = 34.1 bits (77), Expect = 0.073
Identities = 35/248 (14%), Positives = 78/248 (31%), Gaps = 62/248 (25%)
Query: 106 YNQVDEVTHAYSLAFSL--DGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSA 163
D V+ L ++L ++ F+ EV + N + ++S
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV------------LRINY-KF----LMSP 97
Query: 164 IAINPVHPDICALGTYSKIIGLFSDSD-------GRPLFFLKGHNGGITHLEFSSNGILL 216
I P + + L++D+ R +LK + L + +L+
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELR-PAKNVLI 155
Query: 217 F--SGARKDCEII--CWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN--------YLLS 264
G+ K + C + + ++ + +L +C++ L
Sbjct: 156 DGVLGSGKTWVALDVCLSYK----VQCKMDFKIF-----WLNLKNCNSPETVLEMLQKLL 206
Query: 265 GNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADAT 324
+ + + + ++SN+ S+Q L + K +E LLV
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRI--HSIQAELRRL-----------LKSKPYENCLLVLLNV 253
Query: 325 CSGQITNV 332
+ + N
Sbjct: 254 QNAKAWNA 261
Score = 31.4 bits (70), Expect = 0.52
Identities = 37/282 (13%), Positives = 77/282 (27%), Gaps = 80/282 (28%)
Query: 2 DIEEDVDEAPDGTC---LLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG 58
I+ + D + L +S LR L S+ + +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCL------------------- 247
Query: 59 GIIYDYVWYPKTSSIDGFTSYFLC----SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTH 114
++ V K + F C ++ + + D + + +T
Sbjct: 248 -LVLLNVQNAKA--WNAFN--LSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTP 300
Query: 115 AYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDIC 174
+ L + D P RE ++ N P +S IA + + +
Sbjct: 301 DEVKSL----------LLKYLDCRPQDLP-REVLTTN--PR----RLSIIAES-IRDGLA 342
Query: 175 ALGTY--------SKIIGLF----SDSDGRPLF-----FLKGHNGGITH--LEFSSNGIL 215
+ + II ++ R +F F + I L ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLS-----LI 395
Query: 216 LFSGARKDCEIICWDLRNPGCIL-HTFPRQVSTNQRVYFDLT 256
F + D ++ L + +S +Y +L
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELK 436
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 40.3 bits (95), Expect = 6e-04
Identities = 38/247 (15%), Positives = 68/247 (27%), Gaps = 51/247 (20%)
Query: 89 IHLWDSVGGEIKATYRPYNQV-----DEVTHAYSLAFSLDGNKIYAGFLSE---VKI--F 138
+ +W + + +EV +A+S DG + S V I
Sbjct: 82 VSIWAKEESADRTFEMDLLAIIEGHENEV---KGVAWSNDGYYLATC--SRDKSVWIWET 136
Query: 139 STDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDG--R 192
EC+S + V + HP + A +Y + ++ D D
Sbjct: 137 DESGEEYECISV-----LQEHSQDVKHVIW---HPSEALLASSSYDDTVRIWKDYDDDWE 188
Query: 193 PLFFLKGHNGGITHLEFSSNG--ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
+ L GH G + +F L SG+ D + W +
Sbjct: 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-DSTVRVWKYMGDDEDDQQEWVCEAILPD 247
Query: 251 --------VYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
V + + + S +G L+++ E
Sbjct: 248 VHKRQVYNVAW---GFNGLIASVGADGVLAVYEEVDG--------EWKVFAKRALCHGVY 296
Query: 303 CTNGVRW 309
N V+W
Sbjct: 297 EINVVKW 303
Score = 31.0 bits (71), Expect = 0.52
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 8/88 (9%)
Query: 159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSD----GRPLFFLKGHNGGITHLEFSSNGI 214
+ + I A G+ + I L S + H I + + +
Sbjct: 15 EKIWSFDF---SQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS 71
Query: 215 LLFSGARKDCEIICWDLRNPGCILHTFP 242
LL +G+ D + W
Sbjct: 72 LLAAGSF-DSTVSIWAKEESADRTFEMD 98
Score = 27.9 bits (63), Expect = 5.2
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 19/119 (15%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN---PGCILHTFP---RQVSTNQR 250
LK + I +FS +L +G+ D +I ++ + + + +
Sbjct: 10 LKLYKEKIWSFDFSQG--ILATGST-DRKIKLVSVKYDDFTLIDVLDETAHKKAIRS--- 63
Query: 251 VYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
V + ++ L +G+ + +SIW S + + L H++ GV W
Sbjct: 64 VAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFEM-----DLLAIIEGHENEVKGVAW 115
Score = 27.2 bits (61), Expect = 7.7
Identities = 9/87 (10%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 196 FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL 255
H + ++ + NG++ S D + ++ + + + +
Sbjct: 245 LPDVHKRQVYNVAWGFNGLIA-SVGA-DGVLAVYEEVDGEWKVFAKRALCHGVYEINV-V 301
Query: 256 TSCS----NYLLSGNTNGDLSIWNVNT 278
L +G +G ++ W++
Sbjct: 302 KWLELNGKTILATGGDDGIVNFWSLEK 328
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 40.3 bits (95), Expect = 6e-04
Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 55/202 (27%)
Query: 89 IHLWDSVGGEIKATYRPYNQV-----DEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRP 143
+ +WDS G + N+ D V YS+ F+ DG + +G S DR
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSV---YSVVFTRDGQSVVSG--------SLDR- 278
Query: 144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG 203
++K W + L + + + G GH
Sbjct: 279 -------SVKLW----------------N---LQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL----HTFP-RQV--STNQRVYFDLT 256
+ + + N + SG+ KD ++ WD ++ +L H V + + +
Sbjct: 313 VLSVATTQNDEYILSGS-KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE-- 369
Query: 257 SCSNYLLSGNTNGDLSIWNVNT 278
N +G+ + IW
Sbjct: 370 --YNVFATGSGDCKARIWKYKK 389
Score = 37.6 bits (88), Expect = 0.004
Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 24/143 (16%)
Query: 116 YSLAFSLDGNKIYAGFLSE--VKIFS-------------TDRPGRECVSRNLKPWFRKNI 160
+ FS DG + G +++ +
Sbjct: 68 CCVKFSNDGEYLATG--CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 161 VSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS 218
+ ++ +P D A G ++I ++ + + + L+GH I L++ +G L S
Sbjct: 126 IRSVCFSP---DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 219 GARKDCEIICWDLRNPGCILHTF 241
G+ D + WDLR G T
Sbjct: 183 GSG-DRTVRIWDLRT-GQCSLTL 203
Score = 36.0 bits (84), Expect = 0.012
Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 69/229 (30%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
I +WD +I + + ++ YSL + G+K+ +G S DR
Sbjct: 147 IRIWDIENRKIVMILQGHE--QDI---YSLDYFPSGDKLVSG--------SGDR------ 187
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
++ W D+ G+ L + G+T +
Sbjct: 188 --TVRIW----------------DL---------------RTGQCSLTLSIED-GVTTVA 213
Query: 209 FS-SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQ----RVYF-----DLTSC 258
S +G + +G+ D + WD G ++ + + VY D
Sbjct: 214 VSPGDGKYIAAGSL-DRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRD---- 267
Query: 259 SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
++SG+ + + +WN+ +N S + + H+D V
Sbjct: 268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316
Score = 34.1 bits (79), Expect = 0.049
Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 35/152 (23%)
Query: 116 YSLAFSLDGNKIYAGFLSE-VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD 172
LD + + + P ++V + + D
Sbjct: 19 PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS---ND 75
Query: 173 ICALGTY----S-KIIGLFSDSDGRPLFFLKGHNGGITHLE------------------F 209
G Y K ++ SDG + L + E F
Sbjct: 76 ----GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 131
Query: 210 SSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
S +G L +GA D I WD+ N I+
Sbjct: 132 SPDGKFLATGAE-DRLIRIWDIEN-RKIVMIL 161
Score = 33.0 bits (76), Expect = 0.11
Identities = 8/51 (15%), Positives = 12/51 (23%), Gaps = 7/51 (13%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP------GCILHTF 241
H+ I + + K + L NP LH
Sbjct: 11 RANHSKPIPPFLLDLDSQSVPDAL-KKQTNDYYILYNPALPREIDVELHKS 60
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 39.5 bits (91), Expect = 0.001
Identities = 9/91 (9%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC 258
G + F LL E+ + + ++ + + + + F
Sbjct: 15 GMSSKPIAAAFDFTQNLLAIAT-VTGEVHIYGQQQ-VEVVIKLEDRSAIKE-MRF---VK 68
Query: 259 SNYLLSGNTNGDLSIWNVNTSNLPSSPYEES 289
YL+ N + + ++ + + ++ +
Sbjct: 69 GIYLVVINAKDTVYVLSLYSQKVLTTVFVPG 99
Score = 38.7 bits (89), Expect = 0.002
Identities = 25/209 (11%), Positives = 65/209 (31%), Gaps = 29/209 (13%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAY------SLAFSLDGNKIYAGFLS-EVKIFSTD 141
+ ++D+ G+I+ + + ++F+ + ++ + +V +F +
Sbjct: 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE 518
Query: 142 RPGRECVSRNLKPWFRKNIVSAIAINPVH---PDICALGTYSKIIGLFSDSDGRPLFFLK 198
V + + ++N + D+ G P +
Sbjct: 519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF------MPSTAVH 572
Query: 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC 258
+ G + + S+ G + A ++ D R P I R++S Q
Sbjct: 573 ANKGKTSAINNSNIGFVGI--AYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEF 630
Query: 259 -----------SNYLLSGNTNGDLSIWNV 276
S ++ G G++ + +
Sbjct: 631 VIMEYGDDGYSSILMVCGTDMGEVITYKI 659
Score = 38.3 bits (88), Expect = 0.003
Identities = 16/159 (10%), Positives = 49/159 (30%), Gaps = 9/159 (5%)
Query: 115 AYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDIC 174
+ AF N + ++ ++ + E V + ++ + + +
Sbjct: 20 PIAAAFDFTQNLLAIATVTG-EVHIYGQQQVEVVIKLE----DRSAIKEMRFVKGIYLVV 74
Query: 175 ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP 234
+ + S + L + G IT ++ ++ + G + + +I +D+
Sbjct: 75 INA--KDTVYVLSLYSQKVLTTVFVP-GKITSIDTDASLDWMLIGLQ-NGSMIVYDIDRD 130
Query: 235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI 273
++ L+ + + G + I
Sbjct: 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169
Score = 27.9 bits (61), Expect = 6.7
Identities = 25/295 (8%), Positives = 69/295 (23%), Gaps = 32/295 (10%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
+L + + +D+ S ++ N + K ++ + I+ W P+
Sbjct: 108 ASLDWMLIGLQNGSMIVYDIDR--DQLSSFKLDNLQ-KSSFFPAARLSPIV-SIQWNPRD 163
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATY-------------RPYNQVDEVTHAYS 117
+ S + V EIK ++
Sbjct: 164 IGT-------VLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216
Query: 118 LAFSLDGNKIYAGFL-SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD-ICA 175
+ + I + + + + + I + + I
Sbjct: 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISK 276
Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235
+ + ++ +G N +T ++ + + + + +
Sbjct: 277 VYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS-YEGMKNYYANPKQMK 335
Query: 236 CILHTFPRQV-----STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
+ Q YF +L NG++ +
Sbjct: 336 IFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 36.1 bits (84), Expect = 0.013
Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 31/241 (12%)
Query: 10 APD--GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWY 67
AP G L ND LR +D E W +++ L+ + W
Sbjct: 119 APAHLGLKLACLGNDGILRLYD-ALEPSDLRSWTLTSEMKVLSIPPANHLQSD-FCLSWC 176
Query: 68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
P S + S++ I G++ + + S++++ +
Sbjct: 177 PSRFSPEKLAV----SALEQAIIYQRGKDGKLHVAAKLPGHKSLI---RSISWAPSIGRW 229
Query: 128 YAGFLS-----EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-- 180
Y + ++IF +++ ++ + D+
Sbjct: 230 YQLIATGCKDGRIRIFKITEKLS-------PLASEESLTNSNMFDN-SADVDMDAQGRSD 281
Query: 181 ----KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
+ L S+ L HNG + + ++ G +L S D ++ W
Sbjct: 282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD-DGKVRLWKATYSNE 340
Query: 237 I 237
Sbjct: 341 F 341
Score = 30.0 bits (68), Expect = 1.0
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 197 LKGHNGGITHLEF--SSNGILLFSGARKDCEIICWDLRN--PGCILHTFPRQVSTNQRVY 252
L F S++ + G +L++ +L V
Sbjct: 254 LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313
Query: 253 FDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
++LT L S +G + +W SN
Sbjct: 314 WNLTG--TILSSAGDDGKVRLWKATYSN 339
Score = 28.4 bits (64), Expect = 3.2
Identities = 12/123 (9%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 196 FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN---PGCILHTFP------RQVS 246
F GH+ + + + G + + + D I + L + ++ +
Sbjct: 6 FDSGHDDLVHDVVYDFYGRHVATCSS-DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAID 64
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
+ + S + + + +W + S L + +
Sbjct: 65 ------WASPEYGRIIASASYDKTVKLWEEDPDQEECSG---RRWNKLCTLNDSKGSLYS 115
Query: 307 VRW 309
V++
Sbjct: 116 VKF 118
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 35.9 bits (82), Expect = 0.014
Identities = 41/292 (14%), Positives = 89/292 (30%), Gaps = 46/292 (15%)
Query: 10 APDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYP 68
AP G T + L DL + +++ R ++ + + ++ P
Sbjct: 42 APGGRIAYATVNKSESLVKIDLVT---GETLGR-------IDLSTPEERVKSLFGAALSP 91
Query: 69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK----ATYRPYNQVDEVTHAYSLAFSLDG 124
DG T S + + ++ + T + LA++ DG
Sbjct: 92 -----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146
Query: 125 NKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKI-- 182
+K+Y ++ + + G + ++ W + + V + G +
Sbjct: 147 SKLYGLG-RDLHVMDPEA-GTLVEDKPIQSWEAETYAQPDVLA-VWNQHESSGVMATPFY 203
Query: 183 IGLFSDSDGRPLFFLKG------HNGGITHLEFSSNGILLFSGAR---------KDCEII 227
P + G G + E + FS A +
Sbjct: 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLE 263
Query: 228 CWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSNYLLSGNTNGDLSIWNVNT 278
+DL I ++V Y ++++ + + G GDL+ ++ T
Sbjct: 264 SFDLEKNASI-----KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310
Score = 28.6 bits (63), Expect = 2.9
Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 19/134 (14%)
Query: 16 LLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75
+L + + L D ++ + I + G + G
Sbjct: 4 ILAPARPDKLVVIDTEKM--------------AVDKVITIADAGPTPMVP----MVAPGG 45
Query: 76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEV 135
+Y + + D V GE + V + A S DG +
Sbjct: 46 RIAY-ATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104
Query: 136 KIFSTDRPGRECVS 149
+ V+
Sbjct: 105 LELTHFEVQPTRVA 118
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 35.6 bits (83), Expect = 0.015
Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 60/189 (31%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
+ LW + + S+ + + + G D
Sbjct: 41 VRLWSKDDQWLGTVVYTGQ--GFL---NSVCYDSEKELLLFG--------GKD------- 80
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
I + LF+ S PL+ L GH G + L
Sbjct: 81 ---------TMI--------------------NGVPLFATSGEDPLYTLIGHQGNVCSLS 111
Query: 209 FSSNGILLFSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTSCSNYLLSGN 266
F ++ SG+ D W + L H V + V F N L+ +
Sbjct: 112 FQDGVVI--SGSW-DKTAKVWKEGSLVYNLQAHN--ASVWDAKVVSFS----ENKFLTAS 162
Query: 267 TNGDLSIWN 275
+ + +W
Sbjct: 163 ADKTIKLWQ 171
Score = 33.6 bits (78), Expect = 0.068
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
G L +GH + ++ NG ++ S D + W N G +
Sbjct: 213 HTGDVLRTYEGHESFVYCIKLLPNGDIV-SCGE-DRTVRIWSKEN-GSLKQVI 262
Score = 31.7 bits (73), Expect = 0.28
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 26/117 (22%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYF 253
LKGH+ + + + + S +R D + W + + +++ V +
Sbjct: 14 LKGHDQDVRDVVAVDDSKVA-SVSR-DGTVRLWSK-DDQWLGTVVYTGQGFLNS---VCY 67
Query: 254 DLTSCSNYLLSG---NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
D S LL G + ++ + ++PLY HQ +
Sbjct: 68 D--SEKELLLFGGKDTMINGVPLFATSG------------EDPLYTLIGHQGNVCSL 110
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 34.9 bits (81), Expect = 0.027
Identities = 43/306 (14%), Positives = 95/306 (31%), Gaps = 69/306 (22%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
GT L T S+D ++ ++ N L L+ G G ++ W
Sbjct: 23 YYGTRLATCSSDRSVK------------IFDVRNGGQILIADLR---GHEGPVWQVAWAH 67
Query: 69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNK 126
+ + S + +W G + ++ V S+ ++ G
Sbjct: 68 -----PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSV---NSVCWAPHDYGLI 119
Query: 127 IYAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP--------------- 168
+ G S + + + G+ V + +A++ P
Sbjct: 120 LACG--SSDGAISLLTYTGEGQWEVKKINNA--HTIGCNAVSWAPAVVPGSLIDHPSGQK 175
Query: 169 -VHPDICALGTYSKIIGLFSDSDGRPLFF---LKGHNGGITHLEFSSNGILLF----SGA 220
+ A G +I L+ + + L+ H+ + + ++ + L S +
Sbjct: 176 PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235
Query: 221 RKDCEIICWDLRNP------GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
+D + W + +LH F V V + +T+ N L + +++W
Sbjct: 236 -QDGRVFIWTCDDASSNTWSPKLLHKFNDVV---WHVSWSITA--NILAVSGGDNKVTLW 289
Query: 275 NVNTSN 280
+
Sbjct: 290 KESVDG 295
Score = 31.8 bits (73), Expect = 0.26
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 24/121 (19%)
Query: 196 FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL------HTFP-RQVSTN 248
H I + G L + + D + +D+RN G IL H P QV+
Sbjct: 8 VDTSHEDMIHDAQMDYYGTRLATCSS-DRSVKIFDVRNGGQILIADLRGHEGPVWQVA-- 64
Query: 249 QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308
+ N L S + + + IW E ++ + H N V
Sbjct: 65 ----WAHPMYGNILASCSYDRKVIIWREENGTW----------EKSHEHAGHDSSVNSVC 110
Query: 309 W 309
W
Sbjct: 111 W 111
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 34.7 bits (80), Expect = 0.031
Identities = 36/267 (13%), Positives = 75/267 (28%), Gaps = 52/267 (19%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
+ + T S L + + E K V L+ +K + W
Sbjct: 79 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL--LDSDMK---KHSFWALKWGASN 133
Query: 71 SSIDGFTSYFLCSSMYAPIHLWD-----SVGGEIKATYRPYNQVDEVTHA--------YS 117
+ + + + ++W + + P ++ + S
Sbjct: 134 DRLLS--HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 191
Query: 118 LAFSLDGNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD 172
+ S G I G V+I R + + N + ++ P
Sbjct: 192 VDISERG-LIATG--FNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKF---SPQ 244
Query: 173 --ICALG----TYSKI----------IGLFSD--SDGRPLFFLKGHNGGITHLEFSSNGI 214
+ A+ ++ I IG S + H+ + L F+ +G
Sbjct: 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 304
Query: 215 LLFSGARKDCEIICWDLRNPGCILHTF 241
L S D ++ WD++ + T
Sbjct: 305 TLCSAGW-DGKLRFWDVKTKER-ITTL 329
Score = 33.6 bits (77), Expect = 0.072
Identities = 37/251 (14%), Positives = 72/251 (28%), Gaps = 56/251 (22%)
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTH---AYSLAFSLD--- 123
T+S G ++ + + + + + H A S D
Sbjct: 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK--------KHSFWALKWGASNDRLL 137
Query: 124 GNKIYAGFLSE---VKI--FSTDRPGRECVSRNLKPWFR-----------KNIVSAIAIN 167
+++ A I F ++ N P +++ I
Sbjct: 138 SHRLVAT--DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI- 194
Query: 168 PVHPD-ICALGTYSKIIGLFSDSDGRPLFF------LKGHNGGITHLEFSSNGILLFSGA 220
+ A G + + + S RPL+ + ++ I ++FS G LL
Sbjct: 195 --SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 252
Query: 221 R-KDCEIIC-WDLRNPGCILHTFPRQVSTNQRVYFDL------TSCS-----NYLLSGNT 267
I ++ G + + ++Q + S S L S
Sbjct: 253 DSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311
Query: 268 NGDLSIWNVNT 278
+G L W+V T
Sbjct: 312 DGKLRFWDVKT 322
Score = 28.9 bits (65), Expect = 2.4
Identities = 17/166 (10%), Positives = 46/166 (27%), Gaps = 28/166 (16%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHA-YSLAFSLDGNKIYAG----FLSEVKIFSTDRP 143
+ + + + + + +++ S+ FS G+ + + ++ T+
Sbjct: 209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF- 267
Query: 144 GRECVSRNLKPWFRKNI-----------VSAIAINPVHPD--ICALGTYSKIIGLFSDSD 190
E + +L + V +++ N + + +
Sbjct: 268 -GERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFND---SGETLCSAGWDGKLRFWDVKT 322
Query: 191 GRPLFFLKGHNGGITHLE----FSSNGILLFSGARKDCEIICWDLR 232
+ L H I E +G L D + + R
Sbjct: 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 368
Score = 27.0 bits (60), Expect = 8.6
Identities = 8/78 (10%), Positives = 18/78 (23%), Gaps = 3/78 (3%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT 256
K H+ I + ++ + S + D + WD + +
Sbjct: 12 GKAHDADIFSVSACNSFTV--SCSG-DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 68
Query: 257 SCSNYLLSGNTNGDLSIW 274
+ L
Sbjct: 69 DVLQAIERDAFELCLVAT 86
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 34.8 bits (79), Expect = 0.038
Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 36/133 (27%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
+G + ++ + T DL + ++ +I D+
Sbjct: 387 DRNGKFAVVANDRFEIMTVDLET---------------GKPTVIERSREAMITDFTISD- 430
Query: 70 TSSIDGFTSYFLCSSMYAP--------IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS 121
+ + + IH++D G + + E +H Y+ AF
Sbjct: 431 ----NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------IFAATTENSHDYAPAFD 480
Query: 122 LDGNKIYAGFLSE 134
D +Y +LS
Sbjct: 481 ADSKNLY--YLSY 491
Score = 29.0 bits (64), Expect = 3.1
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 64 YVWYPKTSSIDG----FTSYFLCSSMYAPIHLWDSVGGEIKA-TYRPYNQVDEVTHAYSL 118
+ + DG S A ++ ++ GEIK TY
Sbjct: 54 VINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVA 112
Query: 119 AFSLDGNKIYA 129
F DGN I +
Sbjct: 113 GFDPDGNLIIS 123
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 33.8 bits (78), Expect = 0.065
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 24/126 (19%)
Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL------HTFP-R 243
G + HN I G L + + D I +++ L H P
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSS-DKTIKIFEVEGETHKLIDTLTGHEGPVW 59
Query: 244 QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC 303
+V + L S + +G + IW + + H
Sbjct: 60 RVD------WAHPKFGTILASCSYDGKVLIWKEENGRW----------SQIAVHAVHSAS 103
Query: 304 TNGVRW 309
N V+W
Sbjct: 104 VNSVQW 109
Score = 28.8 bits (65), Expect = 2.5
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 197 LKGHNGGITHLEFSSN---GILLFSGARKDCEIICWDLRNPG-------CILHTFPRQVS 246
L+GH+ + + +S L S + +D I W N FP +
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL- 259
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
R + L+ N L + +++W N
Sbjct: 260 --WRASWSLSG--NVLALSGGDNKVTLWKENLEG 289
Score = 27.3 bits (61), Expect = 8.0
Identities = 14/109 (12%), Positives = 28/109 (25%), Gaps = 20/109 (18%)
Query: 116 YSLAFSLDGNKI-YAGFLSEVKIFSTDRPGR-ECVSRNLKPWFRKNIVSAIAINPVHPDI 173
+ ++SL GN + +G ++V ++ + G+ E VH
Sbjct: 260 WRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE------------------VHQGG 301
Query: 174 CALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK 222
G F + L F+ +
Sbjct: 302 GGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYT 350
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 33.4 bits (76), Expect = 0.12
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 12/117 (10%)
Query: 194 LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP-GCILHTFPRQVSTNQRVY 252
+ HN I G L + + D I +++ ++ T RV
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSS-DKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 253 FDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
+ L S + +G + IW + + H N V+W
Sbjct: 61 WAHPKFGTILASCSYDGKVLIWKEENGRW----------SQIAVHAVHSASVNSVQW 107
Score = 29.9 bits (67), Expect = 1.3
Identities = 19/154 (12%), Positives = 39/154 (25%), Gaps = 13/154 (8%)
Query: 192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV 251
+ L + + +S +G +L D ++ W G
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGKWEPAGEVHQGGGGSG 303
Query: 252 YFDLTS---------CSNYLLSGNTNGDLSIWNVNTSNLPSSPY---EESVQEPLYKFSA 299
TS + L S + + + ++ Y + S L
Sbjct: 304 GGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDI 363
Query: 300 HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK 333
++ + +R L D +I V
Sbjct: 364 VGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVT 397
Score = 29.5 bits (66), Expect = 1.7
Identities = 29/201 (14%), Positives = 48/201 (23%), Gaps = 28/201 (13%)
Query: 89 IHLW--DSVGGEIKATYRPYNQ-VDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGR 145
+W D+ G K T + D + + ++SL GN + D
Sbjct: 231 CIIWTQDNEQGPWKKTLLKEEKFPDVL---WRASWSLSGNVLALS--------GGD---- 275
Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT 205
+ W VH G F + L
Sbjct: 276 ----NKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEI 331
Query: 206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG 265
F+ + + + G +L T + + T L
Sbjct: 332 DNAKLIMKERRFTASYTFAKF------STGSMLLTKDIVGKSGVSIKRLPTELQRKFLFD 385
Query: 266 NTNGDLSIWNVNTSNLPSSPY 286
+ D I V S+PY
Sbjct: 386 DVYLDKEIEKVTIEARKSNPY 406
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.15
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 7/25 (28%)
Query: 81 LCSSM--YAPIHLWDSVGG-EIKAT 102
L +S+ YA DS IKAT
Sbjct: 25 LQASLKLYAD----DSAPALAIKAT 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 32.2 bits (74), Expect = 0.21
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 24/123 (19%)
Query: 194 LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP-GCILHTFP------RQVS 246
+ HN I G + + + D I +++ ++ T +V
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSS-DKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
+ L S + +G + IW + + H N
Sbjct: 61 ------WAHPKFGTILASCSYDGKVMIWKEENGRW----------SQIAVHAVHSASVNS 104
Query: 307 VRW 309
V+W
Sbjct: 105 VQW 107
Score = 31.4 bits (72), Expect = 0.36
Identities = 44/314 (14%), Positives = 86/314 (27%), Gaps = 89/314 (28%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVW---- 66
G + T S+D ++ ++ + KL TL EG VW
Sbjct: 19 YYGKRMATCSSDKTIK------------IFEVEGETHKLIDTLTGHEG-----PVWRVDW 61
Query: 67 -YPK------TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLA 119
+PK + S DG + +W G V S+
Sbjct: 62 AHPKFGTILASCSYDG-K-----------VMIWKEENGRWSQIAVHAVHSASV---NSVQ 106
Query: 120 FSLD--GNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD 172
++ G + S V + G V++ + P +
Sbjct: 107 WAPHEYGPMLLVA--SSDGKVSVVEFKENGTTSPII-----IDAHAIGVNSASWAPATIE 159
Query: 173 ICALGTYS------------KIIGLFSDSDGRPLFF----LKGHNGGITHLEFSSN---G 213
+ ++ ++ + + L+GH+ + + +S
Sbjct: 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219
Query: 214 ILLFSGARKDCEIICWDLRNPG-------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGN 266
+ S + +D I W N FP + R + L+ N L
Sbjct: 220 SYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---WRASWSLSG--NVLALSG 273
Query: 267 TNGDLSIWNVNTSN 280
+ +++W N
Sbjct: 274 GDNKVTLWKENLEG 287
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A
{Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C*
3rrm_C*
Length = 388
Score = 31.6 bits (71), Expect = 0.37
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 9/114 (7%)
Query: 170 HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW 229
+G + + F + + + F + +L+ + +
Sbjct: 56 SGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGDQVLVSTRN----ALYSL 111
Query: 230 DLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS 283
DL L F S + V F L + +N L+ N+ DLS ++ T +
Sbjct: 112 DLEE----LSEFRTVTSFEKPV-FQLKNVNNTLVILNSVNDLSALDLRTKSTKQ 160
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide,
complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides
plebeius}
Length = 591
Score = 30.9 bits (69), Expect = 0.69
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 47 PKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPY 106
K + + Y + + + + + + LW +V GE
Sbjct: 320 DKAEWHITAANNYTSYSAALFIPDNPQNLKNTTWRLNDKKYFFELWKNVKGERVDITS-- 377
Query: 107 NQVDEVTHAYSLAFSLDGNKIY 128
+ D A+ DG ++Y
Sbjct: 378 SNPDIQVQAF-----KDGGRLY 394
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold,
structural genomics, joint CEN structural genomics,
JCSG; 2.20A {Ralstonia eutropha}
Length = 394
Score = 30.2 bits (68), Expect = 0.96
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 6/117 (5%)
Query: 92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFS-LDGNKIYAGFLSEVKIFSTDRPGR--ECV 148
W + A + P V+ + + + +Y + I+ DR + +
Sbjct: 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ--NHCGIYRMDRREGVWKRI 268
Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT 205
+ P +I I ++ P + S G + G +
Sbjct: 269 GDAM-PREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGES 324
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 29.7 bits (66), Expect = 1.4
Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 21/122 (17%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
++ + N+L D+ S+ + + + + + P
Sbjct: 8 KAGHEYMIVTNYPNNLHVVDVASD--------------TVYKSCVMPDKFGPGTAMMAP- 52
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYR-PYNQVDEVTHAYSLAFSLDGNKIY 128
D T+Y + ++ Y I+ D + + YS A S DG ++Y
Sbjct: 53 ----DNRTAY-VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 107
Query: 129 AG 130
A
Sbjct: 108 AT 109
Score = 28.2 bits (62), Expect = 4.7
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 101 ATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKIFSTD 141
+ + Y +AF G+K+Y G +++ +F+ D
Sbjct: 283 KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET:
DNA; 2.90A {Homo sapiens}
Length = 139
Score = 28.1 bits (63), Expect = 2.1
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 16/80 (20%)
Query: 134 EVKIFS------TDR----PGRECVSRNLKPWFRKNIVSAI------AINPVHPDICALG 177
K FS TD+ P ++ + F+ +I I A NP G
Sbjct: 20 VYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKG 79
Query: 178 TYSKIIGLFSDSDGRPLFFL 197
T I + DSD + + +
Sbjct: 80 TKFDIKRMVEDSDLQTCYCV 99
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 27.8 bits (62), Expect = 3.3
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRP--YNQVDEVTHAYSLAFSLDGNKIYAGF 131
D + + L+D+ G E RP Y D +S+ + +
Sbjct: 53 DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW 112
Query: 132 LSEVKIFSTDRP 143
+ E+K ++ + P
Sbjct: 113 VPELKEYAPNVP 124
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 27.4 bits (61), Expect = 5.8
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRP--YNQVDEVTHAYSLAFSLDGNKIYAG 130
D F++ + L D+ G + RP Y D +S+ +
Sbjct: 54 FDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEK 113
Query: 131 FLSEVKIFSTDRP 143
++ E++ P
Sbjct: 114 WVPEIRCHCPKAP 126
>2cjq_A RNA-directed RNA polymerase; transferase, RNA-dependent RNA
polymerase, nucleotidyltransferase, BVDV, helicase,
membrane, protease; 2.60A {Bovine viral diarrhea virus}
PDB: 1s48_A 1s49_A* 1s4f_A
Length = 720
Score = 27.2 bits (59), Expect = 9.0
Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 104 RPYNQVDEVT---HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGREC-VSRNLKPWFRKN 159
+ + +++ H D Y I S + R + +
Sbjct: 487 KVAYRFEDIEFCSHTPVPVRWSDNTSSYMAGRDTAVILSKMATRLDSSGERGTIAYEKAV 546
Query: 160 IVSAIAINPVHPDI 173
S + + +P +
Sbjct: 547 AFSFLLMYSWNPLV 560
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.436
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,214,640
Number of extensions: 299649
Number of successful extensions: 1416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 304
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)