RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2305
(334 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 59.4 bits (142), Expect = 1e-10
Identities = 22/155 (14%), Positives = 54/155 (34%), Gaps = 9/155 (5%)
Query: 76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEV 135
T F+ + A LWD G + T+ + ++ ++ F +GN G S+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDIN---AICFFPNGNAFATG--SDD 247
Query: 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF 195
+ +++++ + + G ++
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 196 FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
L GH+ ++ L + +G+ + +G+ D + W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIWN 340
Score = 56.3 bits (134), Expect = 1e-09
Identities = 33/304 (10%), Positives = 75/304 (24%), Gaps = 43/304 (14%)
Query: 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
+ D L++ S D L +D + ++ S+ +
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW---------------VMTCA 104
Query: 66 WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
+ P + + +CS + A + Y + S
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 126 KIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL 185
+ + +T V + VS L
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK--------------L 210
Query: 186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
+ +G GH I + F NG +G+ + + + ++ +
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270
Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
V F LL+G + + ++W+ + + H + +
Sbjct: 271 CGITSVSFS--KSGRLLLAGYDDFNCNVWDALK------------ADRAGVLAGHDNRVS 316
Query: 306 GVRW 309
+
Sbjct: 317 CLGV 320
Score = 35.1 bits (79), Expect = 0.009
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
L+GH I + + ++ LL S + +D ++I WD +H P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSAS-QDGKLIIWDSYT-TNKVHAIP 94
Score = 33.6 bits (75), Expect = 0.031
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 25/125 (20%)
Query: 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
+ P+G T S+D R FDL ++ + + I
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-------------ITSVS 277
Query: 66 WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
+ G L ++WD++ + ++ + V+ L + DG
Sbjct: 278 FSK-----SG--RLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVS---CLGVTDDGM 325
Query: 126 KIYAG 130
+ G
Sbjct: 326 AVATG 330
Score = 25.9 bits (55), Expect = 8.4
Identities = 22/194 (11%), Positives = 47/194 (24%), Gaps = 18/194 (9%)
Query: 116 YSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA 175
Y++ + D + + I + + L+ + V A P +
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW----VMTCAYAPSGNYVAC 114
Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235
G + + + + G +L G
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295
TF T + L + +SG + +W+V
Sbjct: 175 QQTTTFTGH--TGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------------MCRQ 220
Query: 296 KFSAHQDCTNGVRW 309
F+ H+ N + +
Sbjct: 221 TFTGHESDINAICF 234
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 54.7 bits (130), Expect = 4e-09
Identities = 39/299 (13%), Positives = 87/299 (29%), Gaps = 34/299 (11%)
Query: 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
V P + +++ S D ++ +D + +++ ++ +++ K +
Sbjct: 22 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81
Query: 66 WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATY---------------RPYNQVD 110
+ + + G+ +
Sbjct: 82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141
Query: 111 EVTHAYSLAFSLDGNKIYAG------------FLSEVKIFSTDRPGRECVS---RNLKPW 155
+ + DG I + R EC+S +
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 201
Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215
+ S + G+ K I ++ S G L L GH+ + + F S G
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 261
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
+ S A D + WD +N C+ T + F + Y+++G+ + + +W
Sbjct: 262 ILSCA-DDKTLRVWDYKNKRCM-KTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 316
Score = 44.7 bits (104), Expect = 7e-06
Identities = 32/236 (13%), Positives = 76/236 (32%), Gaps = 45/236 (19%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
P+G +++ S D ++ +++ + K+
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW--------------------VRMVR 150
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
+ DG + S + +W E KA R + V ++++ + +
Sbjct: 151 PNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVV-----ECISWAPESSYSSIS 203
Query: 131 FLSEVKIFSTDRPGRECVS----RNLKPWFR------------KNIVSAIAINPVHPDIC 174
+ + + +PG +S + +K W N V + + I
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263
Query: 175 ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
+ K + ++ + R + L H +T L+F + +G+ D + W+
Sbjct: 264 S-CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWE 317
Score = 40.1 bits (92), Expect = 2e-04
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
+ L GH +T + F ++ S + D I WD
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASE-DATIKVWDYETGDFE 52
Score = 27.0 bits (58), Expect = 3.4
Identities = 15/198 (7%), Positives = 46/198 (23%), Gaps = 23/198 (11%)
Query: 116 YSLAFSLDGNKIY-AGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDIC 174
+ F + + A + +K++ + E + + V I+ + +
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-----HTDSVQDISFDHSGKLLA 75
Query: 175 ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP 234
+ I + + + ++ + K ++
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135
Query: 235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL 294
+ S + + + +W V T +E
Sbjct: 136 VKTFTG-----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT------------KECK 178
Query: 295 YKFSAHQDCTNGVRWKHH 312
+ H+ + W
Sbjct: 179 AELREHRHVVECISWAPE 196
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 49.4 bits (116), Expect = 2e-07
Identities = 44/317 (13%), Positives = 86/317 (27%), Gaps = 44/317 (13%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
DG L T N V+R S+ L L +
Sbjct: 72 NDGEYLATGCNKTTQ-------------VYRVSDG--SLVARLSDDSAANKDPENLNTSS 116
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
S +C S + I+ ++ + +
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176
Query: 131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD 190
L T R + ++ V+ +A++P A G+ + + ++
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236
Query: 191 GR-------PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR 243
G GH + + F+ +G + SG+ D + W+L+N +
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTP 295
Query: 244 QVSTNQRVYFDLTSC---------SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL 294
T + Y Y+LSG+ + + W+ + PL
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------------GNPL 343
Query: 295 YKFSAHQDCTNGVRWKH 311
H++ V +
Sbjct: 344 LMLQGHRNSVISVAVAN 360
Score = 47.1 bits (110), Expect = 2e-06
Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 18/183 (9%)
Query: 66 WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA--YSLAFSLD 123
+ G Y S+ + +WDS G + N+ YS+ F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265
Query: 124 GNKIYAGFL-SEVKIFSTDRPGRE-------CVSRNLKPWFRKNIVSAIAINPVHPDICA 175
G + +G L VK+++ + + + K+ V ++A + +
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYIL 324
Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHL------EFSSNGILLFSGARKDCEIICW 229
G+ + + + G PL L+GH + + + +G+ DC+ W
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS-GDCKARIW 383
Query: 230 DLR 232
+
Sbjct: 384 KYK 386
Score = 37.9 bits (86), Expect = 0.001
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 11/126 (8%)
Query: 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
V DG +++ S D ++ ++L + + P++ ++ Y +
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI---GHKDFVLSVA 315
Query: 66 WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPY-NQVDEVTHAYSLAFSLDG 124
Y L S + WD G + + N V V A + +
Sbjct: 316 TTQN-------DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368
Query: 125 NKIYAG 130
N G
Sbjct: 369 NVFATG 374
Score = 31.3 bits (69), Expect = 0.16
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 194 LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
L H + ++FS++G L +G + + + + +
Sbjct: 55 LHKSLDHTSVVCCVKFSNDGEYLATGC--NKTTQVYRVSDGSLV 96
Score = 29.4 bits (64), Expect = 0.66
Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 23/207 (11%)
Query: 116 YSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFR-------------KNIVS 162
+ FS DG + G +++ + + +
Sbjct: 66 CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125
Query: 163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK 222
++ +P A G ++I ++ + + + L+GH I L++ +G L SG
Sbjct: 126 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG-SG 183
Query: 223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP 282
D + WDLR C L Y+ +G+ + + +W+ T L
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 283 SSPYEESVQEPLYKFSAHQDCTNGVRW 309
E + + H+D V +
Sbjct: 241 -----ERLDSENESGTGHKDSVYSVVF 262
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 46.0 bits (107), Expect = 3e-06
Identities = 35/305 (11%), Positives = 83/305 (27%), Gaps = 46/305 (15%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
D +++ DN ++ +W + K L G ++
Sbjct: 22 QYDDQKIVSGLRDNTIK------------IWDKNTLECK--RILTGHTGSVLCLQYDERV 67
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ ++ + + E R N + D
Sbjct: 68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127
Query: 130 GFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS 189
L V + + + I +++ S
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSA---------------------SGDRTIKVWNTS 166
Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQ 249
+ L GH GI L++ ++ D I WD+ C+ R + ++
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVV---SGSSDNTIRLWDIECGACL-----RVLEGHE 218
Query: 250 RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
+ + + ++SG +G + +W++ + P +P + L H +++
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEHSGRVFRLQF 275
Query: 310 KHHKF 314
+
Sbjct: 276 DEFQI 280
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 46.0 bits (107), Expect = 3e-06
Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 6/156 (3%)
Query: 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILL 216
++++ + + G K+I ++ + + L L GH+GG+ L+++ GIL+
Sbjct: 12 MTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68
Query: 217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276
+ + GC H F ST + + Y+++G+ + L +W +
Sbjct: 69 SGSTDRTVRVWDI---KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 277 NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH 312
+ EE ++ GV H
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161
Score = 30.2 bits (66), Expect = 0.30
Identities = 33/324 (10%), Positives = 66/324 (20%), Gaps = 35/324 (10%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPS-------ELHCKSVW--------------RPSNQRPK 48
+ ++T ++D +R +D + H VW R
Sbjct: 20 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 79
Query: 49 LNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQ 108
++ Y + S +H+W + +
Sbjct: 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139
Query: 109 VDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWF---RKNIVSAIA 165
V H G + L W K +
Sbjct: 140 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 199
Query: 166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE 225
+ I D+ R G + G+L S
Sbjct: 200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSA 259
Query: 226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
+R ++ S+ +L + +I+N+ + L +
Sbjct: 260 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA- 318
Query: 286 YEESVQEPLYKFSAHQDCTNGVRW 309
D V +
Sbjct: 319 ----------NILKDADQIWSVNF 332
Score = 27.5 bits (59), Expect = 2.2
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-FFLKGHNGGITHLEFSSN 212
+ +SAI V +I G+ ++ +++ G+ + + I + F
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFN-IYNLRSGKLVHANILKDADQIWSVNFKGK 335
Query: 213 GILLFSGARKDCEIICWDL 231
++ + D
Sbjct: 336 TLVAAVEKDGQSFLEILDF 354
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 44.5 bits (103), Expect = 1e-05
Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 5/161 (3%)
Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNG 213
F +S A N A+ + + ++ S + + LK HNG +T ++++ +
Sbjct: 5 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI 273
+ + D W T G+ + +SI
Sbjct: 64 NRIVTCGT-DRNAYVWT-LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121
Query: 274 WNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF 314
N S + +
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162
Score = 32.1 bits (71), Expect = 0.087
Identities = 29/304 (9%), Positives = 74/304 (24%), Gaps = 26/304 (8%)
Query: 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
VD APD ++T D + + L ++ R +
Sbjct: 56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR-------WAPNEK 108
Query: 66 WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
+ S + + + ++ + A S F
Sbjct: 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168
Query: 126 KIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL 185
Y + E + + V + + + A ++ + L
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCL 227
Query: 186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
+ L + + F + L+ +G DC + + + L +F ++
Sbjct: 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGH--DCFPVLFTYDSAAGKL-SFGGRL 284
Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
++ + + + + L S H++ +
Sbjct: 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL---------------DSLHKNSVS 329
Query: 306 GVRW 309
+
Sbjct: 330 QISV 333
Score = 28.3 bits (61), Expect = 1.3
Identities = 21/279 (7%), Positives = 60/279 (21%), Gaps = 29/279 (10%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
D T + N++ + ++ S + + LK G + W P
Sbjct: 17 KDRTQIAICPNNHEVH------------IYEKSGNKWVQVHELKEHNGQ-VTGVDWAPD- 62
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
++ + ++W G K T
Sbjct: 63 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116
Query: 131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--KIIGLFSD 188
+ + F + C + + + +
Sbjct: 117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176
Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN 248
P + G E SS+ + + + + +
Sbjct: 177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236
Query: 249 QRVYFD-------LTSCSNYLLSGNTNGDLSIWNVNTSN 280
+ + + L++ + ++ +++
Sbjct: 237 ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA 275
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 41.7 bits (96), Expect = 7e-05
Identities = 36/281 (12%), Positives = 83/281 (29%), Gaps = 21/281 (7%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPS-------ELHCKSVWRPSNQRPKLNYTLKIKEGGIIY 62
G +++ S+DN L+ + + H VW R + + ++
Sbjct: 24 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ-MRDNIIISGSTDRTLKVW 82
Query: 63 DYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEV--THAYSLAF 120
+ ++ G TS C ++ + S ++ Q V H ++
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142
Query: 121 SLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS 180
+ + + D C+ R G+
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY------SLQFDGIHVVSGSLD 196
Query: 181 KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240
I ++ G + L GH + +E N + D + WD++ C+
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTL 253
Query: 241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL 281
+ N++++ + +G + +W++ T
Sbjct: 254 QGPNKHQSAVTCLQ--FNKNFVITSSDDGTVKLWDLKTGEF 292
Score = 40.6 bits (93), Expect = 2e-04
Identities = 28/206 (13%), Positives = 62/206 (30%), Gaps = 23/206 (11%)
Query: 35 HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDS 94
+ V + K+ + + + DG + + S+ I +WD
Sbjct: 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDV 204
Query: 95 VGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGRECVSRNLK 153
G T + + + L N + +G S VKI+
Sbjct: 205 ETGNCIHTLTGH-------QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ-----T 252
Query: 154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-----GHNGGITHLE 208
SA+ + + + + L+ G + L G G + +
Sbjct: 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312
Query: 209 FSSNGILLFSGAR---KDCEIICWDL 231
S+ ++ G+R ++ +++ D
Sbjct: 313 ASNTKLVCAVGSRNGTEETKLLVLDF 338
Score = 32.9 bits (73), Expect = 0.043
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
+ + LKGH+ + G + SG+ D + W C+
Sbjct: 4 GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSD-DNTLKVWSAVTGKCL 50
Score = 28.2 bits (61), Expect = 1.3
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSG 219
+++ + + G+ + ++S G+ L L GH GG+ + N I+ S
Sbjct: 19 VITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGST 75
Query: 220 ARKDCEIICWDLRNPGCILH 239
R +
Sbjct: 76 DRTLKVWNAETGECIHTLYG 95
Score = 27.5 bits (59), Expect = 2.3
Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 21/121 (17%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
L++ + D+ ++ +W + K + +
Sbjct: 224 ELKDNILVSGNADSTVK------------IWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 270
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
++ + SS + LWD GE + + S
Sbjct: 271 --------NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322
Query: 130 G 130
G
Sbjct: 323 G 323
Score = 27.1 bits (58), Expect = 3.5
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 12/65 (18%)
Query: 250 RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
V L C N ++SG+ + L +W+ T + L H +
Sbjct: 18 HVITCLQFCGNRIVSGSDDNTLKVWSAVT------------GKCLRTLVGHTGGVWSSQM 65
Query: 310 KHHKF 314
+ +
Sbjct: 66 RDNII 70
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 38.8 bits (88), Expect = 6e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
GHN IT L S++G LFS + I WD+
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADA-EGHINSWDISTGISN 47
Score = 32.3 bits (71), Expect = 0.074
Identities = 33/281 (11%), Positives = 76/281 (27%), Gaps = 20/281 (7%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPS--------ELHCKSVWRPSNQRPKLNYTLKIKEGGIIY 62
DG L + + H+ ++D+ + ++H + + +
Sbjct: 22 ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF----TVSWDDH 77
Query: 63 DYVWYPKTSSIDGF-------TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA 115
V S +D +S L ++ A + + + A Y +
Sbjct: 78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 137
Query: 116 YSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA 175
S +L +K + + + VS I S N +
Sbjct: 138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 197
Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235
+ I +++ + S + + D +I W++ P
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257
Query: 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276
+ V + ++S + ++ WNV
Sbjct: 258 DH-PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 38.0 bits (86), Expect = 0.001
Identities = 36/269 (13%), Positives = 71/269 (26%), Gaps = 23/269 (8%)
Query: 7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVW 66
+P G + ++R +D H P P + + + I
Sbjct: 64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
Query: 67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK 126
+ + F + ++ +SV + +R + D+ T A
Sbjct: 124 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 183
Query: 127 IYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLF 186
+ V + G S V D
Sbjct: 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS------------ 231
Query: 187 SDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
H+G + L +S +G + S + D I W++ + T P
Sbjct: 232 --------LKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNVAT-LKVEKTIPVGTR 281
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275
+ + L+S + NG ++ N
Sbjct: 282 IEDQQL-GIIWTKQALVSISANGFINFVN 309
Score = 34.1 bits (76), Expect = 0.019
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
+ H+ T + S +G SG + WD IL T
Sbjct: 40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV-HGNVRIWDTTQTTHILKTTI 98
Query: 243 R 243
Sbjct: 99 P 99
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 37.3 bits (85), Expect = 0.002
Identities = 16/201 (7%), Positives = 48/201 (23%), Gaps = 19/201 (9%)
Query: 90 HLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV- 148
+++D+ ++ + A + D + R +
Sbjct: 1 YVYDADAKKLLGQI-------DGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEII 53
Query: 149 -SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF-----FLKGHN- 201
+ L I + A + P A K + + + + + K +
Sbjct: 54 DNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSE 113
Query: 202 -GGITHLEFSSNGILLFSGARKDCE-IICWDLRNPGCI-LHTFPRQVST-NQRVYFDLTS 257
+ G F+ + + + N + + + +
Sbjct: 114 IDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASR 173
Query: 258 CSNYLLSGNTNGDLSIWNVNT 278
L G++ + +
Sbjct: 174 YKGDYLFTTYGGNVRSADFSG 194
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 36.3 bits (82), Expect = 0.004
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS 259
H + L+F+ G S KD + W I + ++ + D++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQSKE----SSSVLSCDISVDD 318
Query: 260 NYLLSGNTNGDLSIWNV 276
Y+++G+ + +++ V
Sbjct: 319 KYIVTGSGDKKATVYEV 335
Score = 34.4 bits (77), Expect = 0.018
Identities = 5/57 (8%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 175 ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231
++ + G +F + + + S + + +G+ D + +++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGS-GDKKATVYEV 335
Score = 33.6 bits (75), Expect = 0.026
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 5/136 (3%)
Query: 181 KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI--L 238
+IG R + L H + + S+ +++G + WD+ +PG +
Sbjct: 32 ALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPV 88
Query: 239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS 298
N L L+ G LSIW++ S Y +
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 299 AHQDCTNGVRWKHHKF 314
D
Sbjct: 149 ISPDSKVCFSCCSDGN 164
Score = 29.4 bits (64), Expect = 0.64
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 116 YSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP 168
++ S +Y G VK++ PG + L R N + + + P
Sbjct: 55 CAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 35.2 bits (79), Expect = 0.008
Identities = 4/40 (10%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
+ I+ ++ + LL + D + +
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSW-DGSLTVYKFDIQAK 45
Score = 33.3 bits (74), Expect = 0.031
Identities = 32/320 (10%), Positives = 78/320 (24%), Gaps = 45/320 (14%)
Query: 6 DVDEAPDGTCLLTNSNDNHLRTFDLPSEL----------HCKSV----WRPSNQR----- 46
D+ P + LL S D L + + + + + +
Sbjct: 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 47 ------PKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK 100
K++ + + + +S I + D
Sbjct: 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
Query: 101 ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNI 160
+ + + ++ ++ P E + ++ K
Sbjct: 136 VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ 195
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDG---------------RPLFFLKGHNGGIT 205
+ +A+ P + A + + + D R +
Sbjct: 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255
Query: 206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG 265
+EFS L++ D I CW+L+ + F + N+ + N L
Sbjct: 256 SIEFSPRHKFLYTAG-SDGIISCWNLQT-RKKIKNFAK---FNEDSVVKIACSDNILCLA 310
Query: 266 NTNGDLSIWNVNTSNLPSSP 285
++ + +
Sbjct: 311 TSDDTFKTNAAIDQTIELNA 330
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 35.5 bits (80), Expect = 0.008
Identities = 23/275 (8%), Positives = 57/275 (20%), Gaps = 28/275 (10%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
++ + N+L D+ S+ + + + + + P
Sbjct: 5 KAGHEYMIVTNYPNNLHVVDVASD--------------TVYKSCVMPDKFGPGTAMMAP- 49
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKA-TYRPYNQVDEVTHAYSLAFSLDGNKIY 128
D + ++ ++ Y I+ D + + YS A S DG ++Y
Sbjct: 50 ----DN-RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104
Query: 129 AGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII----- 183
A ++ + + P + +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 184 -GLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
G+ L N + + + + E P
Sbjct: 165 IYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 223
Query: 243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN 277
+ +
Sbjct: 224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258
Score = 29.3 bits (64), Expect = 0.63
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKIF 138
+ + +D ++ + Y +AF G+K+Y G +++ +F
Sbjct: 265 NQIYGVLNRLAKYDLKQRKLIKAANLDHTY------YCVAFDKKGDKLYLGGTFNDLAVF 318
Query: 139 STD 141
+ D
Sbjct: 319 NPD 321
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 35.2 bits (79), Expect = 0.009
Identities = 14/114 (12%), Positives = 31/114 (27%), Gaps = 13/114 (11%)
Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC----------ILHTFPRQVS 246
K H+ I + ++ + SG D + WD + +H
Sbjct: 10 GKAHDADIFSVSACNSFTVSCSG---DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH 300
+ + + + +GDL + + + E + H
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120
Score = 30.6 bits (67), Expect = 0.30
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 253 FDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH 312
F +++C+++ +S + +G L +W+ + +P ++S ++K H +
Sbjct: 18 FSVSACNSFTVSCSGDGYLKVWDNKLLD-NENPKDKSYSHFVHKSGLHHVDVLQAIERDA 76
Query: 313 KFERDLLVADATCSGQI 329
LVA + SG +
Sbjct: 77 --FELCLVATTSFSGDL 91
Score = 29.8 bits (65), Expect = 0.48
Identities = 16/135 (11%), Positives = 31/135 (22%), Gaps = 9/135 (6%)
Query: 18 TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT 77
+ N L + + S +L +V +
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF---AHSSWVMSLSFND---SG 301
Query: 78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEV-THAYSLAFSLDGNKIYAGFLSEVK 136
+ + WD E T + D++ LA G+ + + +VK
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERITTLNMHC--DDIEIEEDILAVDEHGDSLAEPGVFDVK 359
Query: 137 IFSTDRPGRECVSRN 151
N
Sbjct: 360 FLKKGWRSGMGADLN 374
Score = 28.7 bits (62), Expect = 1.2
Identities = 36/343 (10%), Positives = 80/343 (23%), Gaps = 67/343 (19%)
Query: 10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKE---GGIIYDYVW 66
+ + ++ S D +L+ VW + ++
Sbjct: 21 SACNSFTVSCSGDGYLK------------VWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA-----YSLAFS 121
+S + + + + ++L +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 122 LDGNKIYAGFLS------EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--- 172
+++ + L I+ E S L + +
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188
Query: 173 --------ICALGTYSKIIGLFSDSDGRPLFFL------KGHNGGITHLEFSSNGILLFS 218
+ A G + + + S RPL+ ++ I ++FS G LL
Sbjct: 189 SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248
Query: 219 GA--RKDCEIICWDLRNPGCILH----------TFPRQVSTNQRVYFDLTSCSNYLLSGN 266
I ++ I + ++ + L S
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308
Query: 267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
+G L W+V T +E + + H D
Sbjct: 309 WDGKLRFWDVKT------------KERITTLNMHCDDIEIEED 339
Score = 27.9 bits (60), Expect = 2.0
Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 5/92 (5%)
Query: 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF 195
+ + +L + + V +++ N + + + + +
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERIT 325
Query: 196 FLKGHNGGI----THLEFSSNGILLFSGARKD 223
L H I L +G L D
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 34.5 bits (77), Expect = 0.013
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
+ + L H G+ +L + + L+ SGA D I W+
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA--DACIKRWN 285
Score = 33.0 bits (73), Expect = 0.037
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233
L + GHN GIT L + L SG+ D I+ W +
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSY-DGRIMEWSSSS 40
Score = 32.6 bits (72), Expect = 0.049
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS 259
E L+ +G+ D I + ++ P I+ + +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPMKIIKALNAHKDGVNNLLW---ETP 269
Query: 260 NYLLSGNTNGDLSIWNV 276
+ L+S + + WNV
Sbjct: 270 STLVSSGADACIKRWNV 286
Score = 25.3 bits (53), Expect = 10.0
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS 283
R ++ + + + +G+ + ++ I++V
Sbjct: 192 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP---- 247
Query: 284 SPYEESVQEPLYKFSAHQDCTNGVRW 309
+ + +AH+D N + W
Sbjct: 248 -------MKIIKALNAHKDGVNNLLW 266
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 32.6 bits (73), Expect = 0.055
Identities = 21/244 (8%), Positives = 59/244 (24%), Gaps = 7/244 (2%)
Query: 72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AG 130
+D + + I L D +I +D + S G + G
Sbjct: 27 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKV------IDTGYAVHISRMSASGRYLLVIG 80
Query: 131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD 190
+ + + V+ +++ S+ A + +
Sbjct: 81 RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140
Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
P + + + + A + +++ G +L + +
Sbjct: 141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV 200
Query: 251 VYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWK 310
+++ N++ + ++ L G +
Sbjct: 201 TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 260
Query: 311 HHKF 314
H K+
Sbjct: 261 HPKY 264
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 32.1 bits (71), Expect = 0.085
Identities = 20/240 (8%), Positives = 48/240 (20%), Gaps = 30/240 (12%)
Query: 89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGR--- 145
+ D G + + + + DG+ I +I +R
Sbjct: 30 QFVIDGEAGRVIGMI-------DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82
Query: 146 ------ECVSRNLKPWFRKNIVS----AIAINPV-HPDICALGTYSKIIGLFSDSDGRPL 194
+ P + +V ++ P + + + +G+
Sbjct: 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 142
Query: 195 FFLKGH-------NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV-- 245
L T +G L +
Sbjct: 143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY 202
Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
S T ++GD + + + + + H+
Sbjct: 203 SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 31.4 bits (69), Expect = 0.14
Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 63 DYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL 122
+ F +Y+ + + +D ++ + L S
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN---------NLTDLRLSA 324
Query: 123 DGNKIYAGFLS-EVKIFSTDRPGRE-CVSRNLKP 154
D + ++ F ++P E V + +P
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
Score = 25.6 bits (54), Expect = 9.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 6 DVDEAPDGTCLLTNSNDNHLRTFDLPS 32
D+ + D ++ +D + TF L
Sbjct: 319 DLRLSADRKTVMVRKDDGKIYTFPLEK 345
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 31.3 bits (69), Expect = 0.17
Identities = 20/186 (10%), Positives = 45/186 (24%), Gaps = 26/186 (13%)
Query: 16 LLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG 75
+L + + L D ++ + I + G + G
Sbjct: 4 ILAPARPDKLVVIDTEK--------------MAVDKVITIADAGPTPMVPMV----APGG 45
Query: 76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEV 135
+ + + D V GE + V + A S DG +
Sbjct: 46 -RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104
Query: 136 KIFSTDRPGRECVSRN-------LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD 188
+ V+ K + ++ +A + LG ++ +
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164
Query: 189 SDGRPL 194
+
Sbjct: 165 TLVEDK 170
Score = 29.0 bits (63), Expect = 0.86
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 85 MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLS-EVKIFSTD 141
Y + +D + YS+ S DG+ ++ G ++ + +
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSY------YSVNVSTDGSTVWLGGALGDLAAYDAE 309
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 31.0 bits (68), Expect = 0.19
Identities = 33/270 (12%), Positives = 72/270 (26%), Gaps = 23/270 (8%)
Query: 11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
L + + + + SV ++ G I D W
Sbjct: 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-------GPISDISWDF-- 125
Query: 71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
+G + G ++Q H
Sbjct: 126 ---EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ-----SRPMRSMT 177
Query: 131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD 190
+ + P + + + + + V + +P + + I F
Sbjct: 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 237
Query: 191 GRPLFFLKGHNGGITHLEF---SSNGILLFSGARKDCEIICWDLRNPGCI-LHTFPRQVS 246
G L +++ + F + + D I WD+ C+ T +Q
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQL 296
Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276
NQ+V T + ++S + +G L+ + +
Sbjct: 297 GNQQVGVVATG-NGRIISLSLDGTLNFYEL 325
Score = 30.3 bits (66), Expect = 0.35
Identities = 14/140 (10%), Positives = 36/140 (25%), Gaps = 9/140 (6%)
Query: 114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD- 172
L++ N I + D + ++V+ + +P+
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 173 ICALGTYSKIIGLFSDSDGRPLFFL--------KGHNGGITHLEFSSNGILLFSGARKDC 224
G S + ++ + + + + G I+ + + G L
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 225 EIICWDLRNPGCILHTFPRQ 244
+ + G L
Sbjct: 139 NFGVFISWDSGNSLGEVSGH 158
Score = 30.3 bits (66), Expect = 0.35
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 6/112 (5%)
Query: 200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQ--RVYFDLTS 257
THL + + K + C D + ++ V F
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 258 CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
S YL SG+ +G + +W +S +F + + W
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVE----VNVKSEFQVLAGPISDISW 123
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 29.8 bits (65), Expect = 0.37
Identities = 20/245 (8%), Positives = 52/245 (21%), Gaps = 15/245 (6%)
Query: 11 PDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
PDGT + N++ N + D + +V S+ + +
Sbjct: 41 PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSV 100
Query: 70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
+ + + + G ++ T V + +
Sbjct: 101 IDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP 160
Query: 130 GFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHP------------DICALG 177
++ + N V P + +
Sbjct: 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVD 220
Query: 178 TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
Y + + + + + + +G ++ + D I
Sbjct: 221 KYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT-NTI 278
Query: 238 LHTFP 242
T
Sbjct: 279 TATMA 283
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 28.6 bits (63), Expect = 1.2
Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 13/146 (8%)
Query: 72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA-- 129
D + + I L D EIK +D + S G ++
Sbjct: 27 DWDLENLFSVTLRDAGQIALIDGSTYEIKTV------LDTGYAVHISRLSASGRYLFVIG 80
Query: 130 --GFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
G ++ + ++ + + + +I ++ A + +
Sbjct: 81 RDGKVNMIDLWMKEPTTVAEIKIGSEAR---SIETSKMEGWEDKYAIAGAYWPPQYVIMD 137
Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNG 213
P E+
Sbjct: 138 GETLEPKKIQSTRGMTYDEQEYHPEP 163
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 286
Score = 27.0 bits (58), Expect = 2.8
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
+ ++ +NP P + L + S RPLF + H + F S L
Sbjct: 3 LRSLLVNPEGPTLMRLNS--------VQSSERPLFLV--HPIEGSTTVFHSLASRL---- 48
Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG 269
L + + + Y ++G + G
Sbjct: 49 --SIPTYGLQCTRAAP-LDSIHSLAAYYIDCIRQVQPEGPYRVAGYSYG 94
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 25.9 bits (55), Expect = 7.9
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 89 IHLWD-SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGREC 147
IH+W+ + G + T VD + S D +Y G E ++ + +
Sbjct: 16 IHVWNLNHEGALTLT----QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 71
Query: 148 VSRNLKPWFRKNIVSAIAINPVHPDIC 174
++ I+ + +
Sbjct: 72 ALTFAAESALPGSLTHISTDHQGQFVF 98
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 227
Score = 25.2 bits (55), Expect = 10.0
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 54 KIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYN 107
+ + ++ YV + I + SY+L + ++ E+ Y Y
Sbjct: 85 ENSDSNVVKSYVVEDENGIITDYFSYYLLPFTV--LD--NAQHDELGIAYLFYY 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.436
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,313,073
Number of extensions: 61297
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 90
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)