Query psy2308
Match_columns 49
No_of_seqs 49 out of 51
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 21:22:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3462|consensus 100.0 2.6E-31 5.6E-36 165.2 4.8 49 1-49 36-84 (105)
2 PF03669 UPF0139: Uncharacteri 99.9 1.3E-25 2.7E-30 137.6 4.9 49 1-49 35-83 (103)
3 COG4281 ACB Acyl-CoA-binding p 78.3 1.1 2.3E-05 27.5 0.8 25 13-45 50-74 (87)
4 PF14235 DUF4337: Domain of un 50.8 57 0.0012 21.0 4.9 30 4-33 122-151 (157)
5 PF07379 DUF1494: Protein of u 47.1 19 0.0004 24.4 2.2 20 2-21 15-34 (170)
6 PF11131 PhrC_PhrF: Rap-phr ex 44.8 16 0.00036 19.2 1.4 29 15-43 1-33 (37)
7 PF05391 Lsm_interact: Lsm int 44.2 8.9 0.00019 18.0 0.3 11 36-46 10-20 (21)
8 PF11342 DUF3144: Protein of u 40.4 14 0.0003 21.8 0.7 22 28-49 8-30 (78)
9 PF03323 GerA: Bacillus/Clostr 39.7 50 0.0011 24.5 3.7 13 3-15 407-419 (470)
10 PF06496 DUF1097: Protein of u 34.8 50 0.0011 20.4 2.6 30 18-47 19-48 (144)
11 COG3308 Predicted membrane pro 30.9 59 0.0013 21.2 2.6 17 17-33 95-111 (131)
12 PF09624 DUF2393: Protein of u 30.0 1.3E+02 0.0029 18.2 4.2 23 4-27 2-24 (149)
13 PF06687 SUR7: SUR7/PalI famil 29.6 1.4E+02 0.003 18.6 4.1 29 4-32 130-161 (212)
14 PF14880 COX14: Cytochrome oxi 27.3 1E+02 0.0023 16.6 2.9 33 5-43 16-48 (59)
15 PF03176 MMPL: MMPL family; I 23.5 2E+02 0.0043 19.2 4.2 29 4-32 153-181 (333)
16 PF13807 GNVR: G-rich domain o 23.2 95 0.0021 17.2 2.3 14 3-16 67-80 (82)
17 PF04922 DIE2_ALG10: DIE2/ALG1 22.8 1.6E+02 0.0035 21.5 3.8 26 4-29 137-162 (379)
18 PF10960 DUF2762: Protein of u 22.6 68 0.0015 18.5 1.6 23 20-43 13-37 (71)
19 PF10954 DUF2755: Protein of u 22.3 96 0.0021 19.4 2.3 14 5-18 84-97 (100)
20 PRK10537 voltage-gated potassi 22.0 2.7E+02 0.0059 20.2 4.9 30 5-34 70-99 (393)
21 PTZ00458 acyl CoA binding prot 21.9 52 0.0011 19.5 1.0 13 13-25 51-63 (90)
22 PF13828 DUF4190: Domain of un 20.7 1.7E+02 0.0037 16.2 5.6 36 3-39 3-38 (62)
23 PRK09459 pspG phage shock prot 20.6 2E+02 0.0044 17.1 4.3 27 5-33 35-61 (76)
24 PF06269 DUF1029: Protein of u 20.3 1E+02 0.0022 17.3 1.9 19 24-42 11-29 (53)
No 1
>KOG3462|consensus
Probab=99.97 E-value=2.6e-31 Score=165.24 Aligned_cols=49 Identities=80% Similarity=1.467 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhcC
Q psy2308 1 MNILGMIFSMCGLMMRLKWCAWAALYCACISFANSRVSDDGKQLLSSFM 49 (49)
Q Consensus 1 ~~~l~~ifg~~Glmmk~K~~aW~al~c~~~S~aN~k~~dD~KQi~ssfm 49 (49)
||+||||||+||+|+|+|||+|+|++||++||||+|++||+|||.||||
T Consensus 36 mn~lgmIfsmcGlM~r~KwCsWlAl~cs~iSfAn~R~seD~KQi~ssfM 84 (105)
T KOG3462|consen 36 MNFLGMIFSMCGLMFRLKWCSWLALYCSCISFANSRNSEDAKQISSSFM 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999997
No 2
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=99.92 E-value=1.3e-25 Score=137.60 Aligned_cols=49 Identities=69% Similarity=1.191 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhcC
Q psy2308 1 MNILGMIFSMCGLMMRLKWCAWAALYCACISFANSRVSDDGKQLLSSFM 49 (49)
Q Consensus 1 ~~~l~~ifg~~Glmmk~K~~aW~al~c~~~S~aN~k~~dD~KQi~ssfm 49 (49)
+|+||++|||+|+|||+|||+|+|++||++|++|+|.++|+||+.||+|
T Consensus 35 ~~~L~~~~~m~gl~mr~K~~aW~al~~s~~S~an~k~~~d~kq~~ss~m 83 (103)
T PF03669_consen 35 MSFLGMIFSMAGLMMRNKWCAWAALFFSCQSFANMKSSNDTKQISSSFM 83 (103)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 5899999999999999999999999999999999999889999999985
No 3
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=78.32 E-value=1.1 Score=27.52 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q psy2308 13 LMMRLKWCAWAALYCACISFANSRVSDDGKQLL 45 (49)
Q Consensus 13 lmmk~K~~aW~al~c~~~S~aN~k~~dD~KQi~ 45 (49)
+.=||||-||..+ -.|+.||.+|=-
T Consensus 50 ~~gr~K~eAW~~L--------KGksqedA~qeY 74 (87)
T COG4281 50 IVGRYKYEAWAGL--------KGKSQEDARQEY 74 (87)
T ss_pred cccchhHHHHhhc--------cCccHHHHHHHH
Confidence 3448999999765 255788888743
No 4
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=50.75 E-value=57 Score=21.00 Aligned_cols=30 Identities=17% Similarity=0.394 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2308 4 LGMIFSMCGLMMRLKWCAWAALYCACISFA 33 (49)
Q Consensus 4 l~~ifg~~Glmmk~K~~aW~al~c~~~S~a 33 (49)
++++++=+-+..|.||..|++..+-...+.
T Consensus 122 IaI~Lasit~Lt~~~~l~~~~~~~g~~G~~ 151 (157)
T PF14235_consen 122 IAIVLASITALTKKKWLWYASLGLGAVGVA 151 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 577888888999999999999988776653
No 5
>PF07379 DUF1494: Protein of unknown function (DUF1494); InterPro: IPR009968 This family consists of several bacterial proteins of around 175 residues in length. Members of this family seem to be found exclusively in Chlamydia species. The function of this family is unknown.
Probab=47.11 E-value=19 Score=24.43 Aligned_cols=20 Identities=15% Similarity=0.647 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy2308 2 NILGMIFSMCGLMMRLKWCA 21 (49)
Q Consensus 2 ~~l~~ifg~~Glmmk~K~~a 21 (49)
.++|++||.+|.-.|.-||+
T Consensus 15 tL~alLlgvLg~w~R~~~~~ 34 (170)
T PF07379_consen 15 TLIALLLGVLGFWYREMFCS 34 (170)
T ss_pred HHHHHHHHhhhHHHHHhhhh
Confidence 57899999999999988875
No 6
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=44.81 E-value=16 Score=19.24 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=20.1
Q ss_pred HHHHH---HHHHHHHHHHHHHHhcccCC-chHH
Q psy2308 15 MRLKW---CAWAALYCACISFANSRVSD-DGKQ 43 (49)
Q Consensus 15 mk~K~---~aW~al~c~~~S~aN~k~~d-D~KQ 43 (49)
+|+|| |.=++.+|-....+|.-.+| +.-|
T Consensus 1 LKsKl~l~CLA~aavF~~a~va~a~~~~f~Vaq 33 (37)
T PF11131_consen 1 LKSKLFLICLAAAAVFTAAGVANAPAHQFHVAQ 33 (37)
T ss_pred CchhHHHHHHHHHHHHHhhcccCCchhhhhHHh
Confidence 46774 66667777777777777776 6655
No 7
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=44.16 E-value=8.9 Score=18.02 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=8.2
Q ss_pred ccCCchHHHHh
Q psy2308 36 RVSDDGKQLLS 46 (49)
Q Consensus 36 k~~dD~KQi~s 46 (49)
++.||+|+++.
T Consensus 10 ~SNddFrkmfl 20 (21)
T PF05391_consen 10 KSNDDFRKMFL 20 (21)
T ss_pred cchHHHHHHHc
Confidence 46779999863
No 8
>PF11342 DUF3144: Protein of unknown function (DUF3144); InterPro: IPR021490 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.43 E-value=14 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.0
Q ss_pred HHHHHHhcccCC-chHHHHhhcC
Q psy2308 28 ACISFANSRVSD-DGKQLLSSFM 49 (49)
Q Consensus 28 ~~~S~aN~k~~d-D~KQi~ssfm 49 (49)
-++.+||....+ |.-|+..|+|
T Consensus 8 ~fI~lAN~~~~~~~~g~Vsaall 30 (78)
T PF11342_consen 8 EFIALANEQNKEEDAGQVSAALL 30 (78)
T ss_pred HHHHHHHHhhccCCcchHHHHHH
Confidence 368899999766 9999988875
No 9
>PF03323 GerA: Bacillus/Clostridium GerA spore germination protein; InterPro: IPR004995 Dormant Bacillus subtilis spores germinate in the presence of particular nutrients called germinants. The spores are thought to recognise germinants through receptor proteins encoded by the gerA family of operons, which includes gerA, gerB, and gerK. The GerA proteins are predicted to be membrane associated.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=39.68 E-value=50 Score=24.54 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q psy2308 3 ILGMIFSMCGLMM 15 (49)
Q Consensus 3 ~l~~ifg~~Glmm 15 (49)
++|-+||+.|+++
T Consensus 407 ~~a~~~G~~G~~~ 419 (470)
T PF03323_consen 407 ILASFFGLYGIIL 419 (470)
T ss_pred HHHHHHhHHHHHH
Confidence 5788899999987
No 10
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=34.80 E-value=50 Score=20.42 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchHHHHhh
Q psy2308 18 KWCAWAALYCACISFANSRVSDDGKQLLSS 47 (49)
Q Consensus 18 K~~aW~al~c~~~S~aN~k~~dD~KQi~ss 47 (49)
.+..|++-++|...|++....+|+|...-+
T Consensus 19 ~l~~W~~Figwa~yfa~G~~~~~~~~~~~~ 48 (144)
T PF06496_consen 19 GLPGWAGFIGWASYFAAGGGKKGLKKSLAS 48 (144)
T ss_pred CchHHHHHHHHHHHHHcCCChhHHHHHHHH
Confidence 466899999999999996677788877644
No 11
>COG3308 Predicted membrane protein [Function unknown]
Probab=30.93 E-value=59 Score=21.22 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2308 17 LKWCAWAALYCACISFA 33 (49)
Q Consensus 17 ~K~~aW~al~c~~~S~a 33 (49)
.+|++|+.++++++-|.
T Consensus 95 er~lawaevllS~~~F~ 111 (131)
T COG3308 95 ERILAWAEVLLSIIFFI 111 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999998887776653
No 12
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=29.99 E-value=1.3e+02 Score=18.19 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2308 4 LGMIFSMCGLMMRLKWCAWAALYC 27 (49)
Q Consensus 4 l~~ifg~~Glmmk~K~~aW~al~c 27 (49)
+.+++=++|+..|.|+ .|...+.
T Consensus 2 ~~~~~~~l~i~~~~k~-~~~~~~~ 24 (149)
T PF09624_consen 2 LFLLFFFLGIKLRKKI-LALSFII 24 (149)
T ss_pred hhHHHHHHHHHHhhHH-HHHHHHH
Confidence 5678889999999994 5554443
No 13
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=29.60 E-value=1.4e+02 Score=18.56 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=16.4
Q ss_pred HHHHH-HHHHHHHHHH--HHHHHHHHHHHHHH
Q psy2308 4 LGMIF-SMCGLMMRLK--WCAWAALYCACISF 32 (49)
Q Consensus 4 l~~if-g~~Glmmk~K--~~aW~al~c~~~S~ 32 (49)
+++++ ++.+...|.+ +..|.+.+++..++
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~ 161 (212)
T PF06687_consen 130 LALILSGLLAFFSRPRNTILSLVASILSLLAF 161 (212)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 44455 3334444433 77777777766655
No 14
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=27.31 E-value=1e+02 Score=16.63 Aligned_cols=33 Identities=3% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q psy2308 5 GMIFSMCGLMMRLKWCAWAALYCACISFANSRVSDDGKQ 43 (49)
Q Consensus 5 ~~ifg~~Glmmk~K~~aW~al~c~~~S~aN~k~~dD~KQ 43 (49)
+.++|++|+.. +.+..|......|.+..+.-||
T Consensus 16 ~tV~~Lig~T~------~~g~~~~~~~y~~~~~~r~~~~ 48 (59)
T PF14880_consen 16 TTVLGLIGFTV------YGGGLTVYTVYSYFKYNRRRRA 48 (59)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888765 7778888877777775444443
No 15
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=23.53 E-value=2e+02 Score=19.20 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2308 4 LGMIFSMCGLMMRLKWCAWAALYCACISF 32 (49)
Q Consensus 4 l~~ifg~~Glmmk~K~~aW~al~c~~~S~ 32 (49)
+.+++.++.+.+|.-+.+.+.+++...+.
T Consensus 153 l~~i~lvl~~~fRs~~~~l~~l~~~~~~~ 181 (333)
T PF03176_consen 153 LLLIFLVLLLVFRSVRAALLPLLPVLLSI 181 (333)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45677788888998888888887776654
No 16
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.20 E-value=95 Score=17.19 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q psy2308 3 ILGMIFSMCGLMMR 16 (49)
Q Consensus 3 ~l~~ifg~~Glmmk 16 (49)
++|+++|+..+++|
T Consensus 67 ~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 67 FLGLILGIGLAFLR 80 (82)
T ss_pred HHHHHHHHHHHHHh
Confidence 34555555555544
No 17
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=22.82 E-value=1.6e+02 Score=21.51 Aligned_cols=26 Identities=19% Similarity=0.555 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2308 4 LGMIFSMCGLMMRLKWCAWAALYCAC 29 (49)
Q Consensus 4 l~~ifg~~Glmmk~K~~aW~al~c~~ 29 (49)
.+-++|.+++++|+.=..|++.+.+.
T Consensus 137 ~sal~g~~sv~fRQTNIvWv~f~~~~ 162 (379)
T PF04922_consen 137 LSALFGLLSVLFRQTNIVWVAFFAGG 162 (379)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 47789999999999999999988775
No 18
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=22.65 E-value=68 Score=18.47 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhcc-cCC-chHH
Q psy2308 20 CAWAALYCACISFANSR-VSD-DGKQ 43 (49)
Q Consensus 20 ~aW~al~c~~~S~aN~k-~~d-D~KQ 43 (49)
.+|+.+++.+.-.. +| +.+ |.||
T Consensus 13 G~fA~LFv~Ll~yv-lK~~~~re~~~ 37 (71)
T PF10960_consen 13 GIFAVLFVWLLFYV-LKENKKREEKQ 37 (71)
T ss_pred CcHHHHHHHHHHHH-HHHhHHhHHHH
Confidence 35877777666555 45 343 5555
No 19
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=22.30 E-value=96 Score=19.41 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy2308 5 GMIFSMCGLMMRLK 18 (49)
Q Consensus 5 ~~ifg~~Glmmk~K 18 (49)
++++|+.|+.+|++
T Consensus 84 c~~~~v~~l~lrwr 97 (100)
T PF10954_consen 84 CLILGVIALILRWR 97 (100)
T ss_pred HHHHHHHHHHHHHH
Confidence 57888999988865
No 20
>PRK10537 voltage-gated potassium channel; Provisional
Probab=22.02 E-value=2.7e+02 Score=20.17 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2308 5 GMIFSMCGLMMRLKWCAWAALYCACISFAN 34 (49)
Q Consensus 5 ~~ifg~~Glmmk~K~~aW~al~c~~~S~aN 34 (49)
.+++.-.|+-+|.|+.=|.+++.....++-
T Consensus 70 ~l~~~~~~l~~~~r~~w~~~~~~~~~~~~~ 99 (393)
T PRK10537 70 FLVLMAIGLLFRARLAWAISILLLLAALAI 99 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777899999999866677666555543
No 21
>PTZ00458 acyl CoA binding protein; Provisional
Probab=21.91 E-value=52 Score=19.55 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q psy2308 13 LMMRLKWCAWAAL 25 (49)
Q Consensus 13 lmmk~K~~aW~al 25 (49)
+.=|.||.||-++
T Consensus 51 ~~~raKw~AW~~l 63 (90)
T PTZ00458 51 YQDRKKYEAWKSI 63 (90)
T ss_pred HHHHHHHHHHHHc
Confidence 4458999999876
No 22
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=20.74 E-value=1.7e+02 Score=16.19 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy2308 3 ILGMIFSMCGLMMRLKWCAWAALYCACISFANSRVSD 39 (49)
Q Consensus 3 ~l~~ifg~~Glmmk~K~~aW~al~c~~~S~aN~k~~d 39 (49)
..++++|++|+..= -..+=+++++-..+....|.++
T Consensus 3 iaslvlgi~~~~~~-~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 3 IASLVLGILGLFLC-GLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhccC
Confidence 56899999999983 4566678888888888887544
No 23
>PRK09459 pspG phage shock protein G; Reviewed
Probab=20.65 E-value=2e+02 Score=17.12 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2308 5 GMIFSMCGLMMRLKWCAWAALYCACISFA 33 (49)
Q Consensus 5 ~~ifg~~Glmmk~K~~aW~al~c~~~S~a 33 (49)
-++.|+.|++. |..-|+.+.....=+-
T Consensus 35 M~l~Gm~~lvi--KLLPWLil~~v~vW~~ 61 (76)
T PRK09459 35 MFLGGMFALMI--KLLPWLLLAVVVVWVI 61 (76)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45678999998 7777888776665543
No 24
>PF06269 DUF1029: Protein of unknown function (DUF1029); InterPro: IPR009372 This entry is represented by Vaccinia virus, A14.5L; it is a family of uncharacterised viral proteins.
Probab=20.32 E-value=1e+02 Score=17.31 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcccCCchH
Q psy2308 24 ALYCACISFANSRVSDDGK 42 (49)
Q Consensus 24 al~c~~~S~aN~k~~dD~K 42 (49)
-...|++.++|.+-+.+.|
T Consensus 11 ~~i~~~al~~N~~~S~~~K 29 (53)
T PF06269_consen 11 LGIICAALLANFKMSSKTK 29 (53)
T ss_pred HHHHHHHHHHHeeeccccc
Confidence 3567888999999655444
Done!