Query psy2308
Match_columns 49
No_of_seqs 49 out of 51
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 21:22:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fly_A Proadrenomedullin N-20 42.5 14 0.00046 17.5 1.5 10 15-24 9-18 (26)
2 3epy_A Acyl-COA-binding domain 21.0 39 0.0013 19.0 1.2 11 14-24 53-63 (89)
3 3flv_A Acyl-COA-binding domain 20.5 39 0.0013 20.3 1.2 11 15-25 78-88 (119)
4 3fp5_A Acyl-COA binding protei 19.0 45 0.0015 19.5 1.2 12 14-25 57-68 (106)
5 2lyy_A Uncharacterized protein 18.4 48 0.0016 19.3 1.2 22 28-49 13-37 (96)
6 1hbk_A ACBP, acyl-COA binding 18.1 50 0.0017 18.4 1.2 12 14-25 53-64 (89)
7 1st7_A ACBP, acyl-COA-binding 17.5 52 0.0018 18.2 1.2 12 14-25 50-61 (86)
8 2cb8_A Acyl-COA-binding protei 17.0 55 0.0019 18.2 1.2 12 14-25 51-62 (87)
9 2cqu_A Peroxisomal D3,D2-enoyl 16.9 69 0.0024 18.9 1.7 12 14-25 65-76 (116)
10 2wh5_A Acyl-COA-binding domain 16.3 57 0.0019 19.0 1.2 11 14-24 61-71 (106)
No 1
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=42.50 E-value=14 Score=17.54 Aligned_cols=10 Identities=50% Similarity=1.159 Sum_probs=8.2
Q ss_pred HHHHHHHHHH
Q psy2308 15 MRLKWCAWAA 24 (49)
Q Consensus 15 mk~K~~aW~a 24 (49)
+|.||-+|+-
T Consensus 9 frKKwn~w~l 18 (26)
T 2fly_A 9 FRKKWNKWAL 18 (26)
T ss_pred HHHHHHHHHH
Confidence 6889999963
No 2
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=20.96 E-value=39 Score=18.98 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAA 24 (49)
Q Consensus 14 mmk~K~~aW~a 24 (49)
-=|.||-||-+
T Consensus 53 ~~~aKw~AW~~ 63 (89)
T 3epy_A 53 KGKAKWEAWNL 63 (89)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34889999976
No 3
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=20.51 E-value=39 Score=20.30 Aligned_cols=11 Identities=55% Similarity=1.156 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q psy2308 15 MRLKWCAWAAL 25 (49)
Q Consensus 15 mk~K~~aW~al 25 (49)
=|.||-||-++
T Consensus 78 graKw~AW~~l 88 (119)
T 3flv_A 78 GRYKWDAWSSL 88 (119)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 48899999764
No 4
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=18.97 E-value=45 Score=19.46 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAAL 25 (49)
Q Consensus 14 mmk~K~~aW~al 25 (49)
-=|.||-||-++
T Consensus 57 ~~raKw~AW~~l 68 (106)
T 3fp5_A 57 TGKAKWDAWKSV 68 (106)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 348999999654
No 5
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=18.38 E-value=48 Score=19.31 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=15.1
Q ss_pred HHHHHHhccc--CC-chHHHHhhcC
Q psy2308 28 ACISFANSRV--SD-DGKQLLSSFM 49 (49)
Q Consensus 28 ~~~S~aN~k~--~d-D~KQi~ssfm 49 (49)
-++.+||... +| +.-|+..|+|
T Consensus 13 ~fI~lAN~q~~~~e~~~g~Vsas~l 37 (96)
T 2lyy_A 13 ELIKLANQQNQNTEIQTGEVSASFM 37 (96)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHH
T ss_pred HHHHHHHHhhcccCcccchHHHHHH
Confidence 3688999654 34 6678877764
No 6
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=18.07 E-value=50 Score=18.36 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAAL 25 (49)
Q Consensus 14 mmk~K~~aW~al 25 (49)
.=|.||-||-++
T Consensus 53 ~~~aKw~AW~~l 64 (89)
T 1hbk_A 53 IDRKKYEAWKSV 64 (89)
T ss_dssp HHHHHHHHHHHT
T ss_pred HhHHHHHHHHHh
Confidence 348899999764
No 7
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=17.51 E-value=52 Score=18.15 Aligned_cols=12 Identities=50% Similarity=0.971 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAAL 25 (49)
Q Consensus 14 mmk~K~~aW~al 25 (49)
-=|.||-||-++
T Consensus 50 ~~raKw~AW~~l 61 (86)
T 1st7_A 50 KDRYKWEAWENL 61 (86)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 347899999753
No 8
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=16.98 E-value=55 Score=18.20 Aligned_cols=12 Identities=42% Similarity=0.886 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAAL 25 (49)
Q Consensus 14 mmk~K~~aW~al 25 (49)
-=|.||-||-++
T Consensus 51 ~~~aKw~AW~~l 62 (87)
T 2cb8_A 51 TGKAKWDAWNEL 62 (87)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 348899999754
No 9
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.91 E-value=69 Score=18.95 Aligned_cols=12 Identities=50% Similarity=1.074 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAAL 25 (49)
Q Consensus 14 mmk~K~~aW~al 25 (49)
.=|.||-||-.+
T Consensus 65 ~graKw~AW~~l 76 (116)
T 2cqu_A 65 INKAKWDAWNAL 76 (116)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 348899999764
No 10
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=16.28 E-value=57 Score=18.97 Aligned_cols=11 Identities=45% Similarity=1.069 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAA 24 (49)
Q Consensus 14 mmk~K~~aW~a 24 (49)
.=|.||-||-+
T Consensus 61 ~~~aKw~AW~~ 71 (106)
T 2wh5_A 61 IGRYKWDAWNS 71 (106)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44889999975
Done!