Query psy2308
Match_columns 49
No_of_seqs 49 out of 51
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 21:22:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2308.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2308hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjd2 f.23.11.1 (D:196-241) 39.6 17 0.0013 17.4 3.1 18 3-20 16-33 (46)
2 d3cx5d2 f.23.11.1 (D:261-307) 22.7 43 0.0031 16.1 3.2 18 3-20 16-33 (47)
3 d1hb6a_ a.11.1.1 (A:) Acyl-CoA 16.3 27 0.002 18.1 1.2 12 14-25 50-61 (86)
4 d1hbka_ a.11.1.1 (A:) Acyl-CoA 10.6 50 0.0037 17.1 1.2 11 14-24 53-63 (89)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 10.5 87 0.0063 13.9 2.7 8 3-10 11-18 (32)
6 d1u2fa_ d.58.7.1 (A:) Splicing 9.0 52 0.0038 15.8 0.8 11 38-48 15-25 (90)
7 d2adba1 d.58.7.1 (A:177-284) P 8.6 29 0.0021 17.6 -0.3 11 38-48 21-31 (108)
8 d2cpza1 d.58.7.1 (A:383-484) C 8.3 42 0.0031 16.8 0.3 10 39-48 33-42 (102)
9 d1x4aa1 d.58.7.1 (A:9-103) Spl 8.3 43 0.0031 16.4 0.3 10 39-48 29-38 (95)
10 d2msta_ d.58.7.1 (A:) Neural R 8.2 40 0.0029 15.5 0.1 11 38-48 13-23 (75)
No 1
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=39.63 E-value=17 Score=17.45 Aligned_cols=18 Identities=28% Similarity=0.754 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2308 3 ILGMIFSMCGLMMRLKWC 20 (49)
Q Consensus 3 ~l~~ifg~~Glmmk~K~~ 20 (49)
++++..+++...-|.||.
T Consensus 16 ~l~~l~~l~yy~KR~~Ws 33 (46)
T d1ppjd2 16 MMGLLLPLVYAMKRHKWS 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 677888888888888886
No 2
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.71 E-value=43 Score=16.14 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2308 3 ILGMIFSMCGLMMRLKWC 20 (49)
Q Consensus 3 ~l~~ifg~~Glmmk~K~~ 20 (49)
++++.+++.+..=|+||.
T Consensus 16 i~s~l~~~~~y~KR~kWs 33 (47)
T d3cx5d2 16 ILSSLYLLSIWVKKFKWA 33 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 567788888888888886
No 3
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.31 E-value=27 Score=18.09 Aligned_cols=12 Identities=42% Similarity=0.863 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAAL 25 (49)
Q Consensus 14 mmk~K~~aW~al 25 (49)
-=|.||-||-++
T Consensus 50 ~~~aKw~AW~~~ 61 (86)
T d1hb6a_ 50 KGKAKWDAWNEL 61 (86)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 347899999765
No 4
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]}
Probab=10.61 E-value=50 Score=17.14 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q psy2308 14 MMRLKWCAWAA 24 (49)
Q Consensus 14 mmk~K~~aW~a 24 (49)
-=|.||-||-+
T Consensus 53 ~~~~Kw~AW~~ 63 (89)
T d1hbka_ 53 IDRKKYEAWKS 63 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45789999964
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.48 E-value=87 Score=13.90 Aligned_cols=8 Identities=13% Similarity=0.750 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q psy2308 3 ILGMIFSM 10 (49)
Q Consensus 3 ~l~~ifg~ 10 (49)
++++.||+
T Consensus 11 fialffgi 18 (32)
T d2e74e1 11 FIALFFGI 18 (32)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 6
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.02 E-value=52 Score=15.80 Aligned_cols=11 Identities=0% Similarity=0.063 Sum_probs=8.2
Q ss_pred CCchHHHHhhc
Q psy2308 38 SDDGKQLLSSF 48 (49)
Q Consensus 38 ~dD~KQi~ssf 48 (49)
+||++|.++.+
T Consensus 15 e~~l~~~F~~~ 25 (90)
T d1u2fa_ 15 EEAMMDFFNAQ 25 (90)
T ss_dssp TTHHHHHHHHH
T ss_pred hHHHHHHHHhh
Confidence 44999998754
No 7
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.63 E-value=29 Score=17.56 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=8.3
Q ss_pred CCchHHHHhhc
Q psy2308 38 SDDGKQLLSSF 48 (49)
Q Consensus 38 ~dD~KQi~ssf 48 (49)
+||++|+++.|
T Consensus 21 e~~L~~~F~~~ 31 (108)
T d2adba1 21 LDVLHQIFSKF 31 (108)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHccC
Confidence 34999998865
No 8
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.35 E-value=42 Score=16.79 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=7.8
Q ss_pred CchHHHHhhc
Q psy2308 39 DDGKQLLSSF 48 (49)
Q Consensus 39 dD~KQi~ssf 48 (49)
||++++++.|
T Consensus 33 ~~l~~~F~~~ 42 (102)
T d2cpza1 33 QDLLQMFMPF 42 (102)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHhh
Confidence 3899988865
No 9
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.28 E-value=43 Score=16.44 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=7.6
Q ss_pred CchHHHHhhc
Q psy2308 39 DDGKQLLSSF 48 (49)
Q Consensus 39 dD~KQi~ssf 48 (49)
+|++|+++.+
T Consensus 29 ~~l~~~F~~~ 38 (95)
T d1x4aa1 29 KDIEDVFYKY 38 (95)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHhcC
Confidence 3899988764
No 10
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.20 E-value=40 Score=15.45 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=7.7
Q ss_pred CCchHHHHhhc
Q psy2308 38 SDDGKQLLSSF 48 (49)
Q Consensus 38 ~dD~KQi~ssf 48 (49)
+||++++++.+
T Consensus 13 e~~l~~~F~~~ 23 (75)
T d2msta_ 13 VEDVKHYFEQF 23 (75)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 33888888754
Done!